Query 001357
Match_columns 1093
No_of_seqs 1479 out of 5044
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 23:59:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.4E-38 1.5E-42 383.8 45.6 509 193-795 80-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4E-37 1.4E-41 375.3 49.9 480 83-637 84-593 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-36 4.1E-41 349.3 50.8 383 133-573 4-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.5E-36 1.2E-40 345.5 49.3 383 89-540 5-388 (388)
5 2gw1_A Mitochondrial precursor 100.0 7.6E-33 2.6E-37 330.6 43.1 426 128-601 6-491 (514)
6 3fp2_A TPR repeat-containing p 100.0 9.4E-33 3.2E-37 331.9 40.9 461 128-792 25-504 (537)
7 3fp2_A TPR repeat-containing p 100.0 1.9E-32 6.4E-37 329.3 41.1 454 79-597 21-500 (537)
8 2gw1_A Mitochondrial precursor 100.0 2.3E-31 7.8E-36 317.8 45.5 420 81-566 4-490 (514)
9 2y4t_A DNAJ homolog subfamily 100.0 3.1E-30 1.1E-34 302.3 45.5 379 112-625 10-413 (450)
10 2y4t_A DNAJ homolog subfamily 100.0 5.2E-30 1.8E-34 300.4 40.5 395 23-466 9-443 (450)
11 3ieg_A DNAJ homolog subfamily 100.0 5E-28 1.7E-32 273.7 47.2 349 128-607 3-354 (359)
12 3ieg_A DNAJ homolog subfamily 100.0 6.7E-28 2.3E-32 272.7 43.5 320 83-420 3-350 (359)
13 4g1t_A Interferon-induced prot 100.0 1.5E-28 5.2E-33 289.9 35.3 393 127-625 50-462 (472)
14 4g1t_A Interferon-induced prot 100.0 7E-28 2.4E-32 284.2 35.3 399 81-600 49-471 (472)
15 3hym_B Cell division cycle pro 100.0 1.5E-26 5.1E-31 258.3 35.7 302 118-426 12-322 (330)
16 2xm6_A Protein corresponding t 100.0 7.5E-24 2.6E-28 250.4 53.0 378 113-570 26-451 (490)
17 2xm6_A Protein corresponding t 99.9 2.2E-23 7.4E-28 246.5 54.3 394 147-622 26-467 (490)
18 3hym_B Cell division cycle pro 99.9 2.3E-25 7.8E-30 248.7 35.4 293 83-393 22-322 (330)
19 2ooe_A Cleavage stimulation fa 99.9 2.8E-24 9.5E-29 256.9 44.8 430 117-624 2-494 (530)
20 1fch_A Peroxisomal targeting s 99.9 1.3E-25 4.5E-30 255.1 30.9 288 109-439 40-360 (368)
21 2ooe_A Cleavage stimulation fa 99.9 3.7E-23 1.3E-27 247.1 48.7 224 542-783 255-496 (530)
22 1fch_A Peroxisomal targeting s 99.9 5.1E-25 1.8E-29 250.2 28.2 311 137-476 34-358 (368)
23 4eqf_A PEX5-related protein; a 99.9 2.7E-24 9.1E-29 244.1 29.1 278 114-435 47-353 (365)
24 4eqf_A PEX5-related protein; a 99.9 2.6E-24 8.8E-29 244.2 26.9 294 149-476 48-355 (365)
25 2h6f_A Protein farnesyltransfe 99.9 4.4E-24 1.5E-28 239.9 26.1 261 120-420 89-363 (382)
26 3cv0_A Peroxisome targeting si 99.9 1.7E-23 6E-28 233.0 30.0 271 127-441 20-318 (327)
27 2h6f_A Protein farnesyltransfe 99.9 1.5E-23 5.2E-28 235.5 27.2 259 517-797 89-366 (382)
28 3cv0_A Peroxisome targeting si 99.9 4.5E-23 1.5E-27 229.7 26.3 274 448-783 21-319 (327)
29 1xi4_A Clathrin heavy chain; a 99.9 1E-19 3.5E-24 221.3 57.0 459 36-618 981-1454(1630)
30 3u4t_A TPR repeat-containing p 99.9 4.2E-22 1.4E-26 215.4 25.9 254 127-387 2-266 (272)
31 1xi4_A Clathrin heavy chain; a 99.9 7.3E-19 2.5E-23 213.9 55.2 512 127-775 984-1530(1630)
32 3e4b_A ALGK; tetratricopeptide 99.9 6.2E-22 2.1E-26 230.1 26.7 387 309-780 7-422 (452)
33 3uq3_A Heat shock protein STI1 99.9 1.6E-21 5.3E-26 208.9 26.9 241 523-793 3-256 (258)
34 3uq3_A Heat shock protein STI1 99.9 2.9E-21 9.9E-26 206.7 28.4 240 127-418 4-255 (258)
35 2pl2_A Hypothetical conserved 99.9 2.1E-21 7.3E-26 201.6 24.3 199 125-331 2-211 (217)
36 3e4b_A ALGK; tetratricopeptide 99.9 2.2E-21 7.7E-26 225.3 26.6 317 132-476 7-350 (452)
37 3u4t_A TPR repeat-containing p 99.9 3.3E-21 1.1E-25 208.4 25.3 252 84-355 4-268 (272)
38 2pl2_A Hypothetical conserved 99.9 2.9E-21 9.9E-26 200.6 23.3 197 83-295 5-212 (217)
39 3mkr_A Coatomer subunit epsilo 99.9 6.2E-20 2.1E-24 199.5 33.1 190 48-268 7-200 (291)
40 3sf4_A G-protein-signaling mod 99.9 6.5E-21 2.2E-25 219.3 25.8 316 126-468 7-367 (406)
41 3mkr_A Coatomer subunit epsilo 99.9 2.1E-20 7.1E-25 203.3 27.9 261 135-413 6-272 (291)
42 3sf4_A G-protein-signaling mod 99.9 6.5E-21 2.2E-25 219.3 23.1 248 339-623 6-297 (406)
43 4a1s_A PINS, partner of inscut 99.8 5.2E-20 1.8E-24 212.4 23.3 283 448-782 48-375 (411)
44 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.4E-19 4.9E-24 195.7 24.2 248 106-365 17-269 (275)
45 4a1s_A PINS, partner of inscut 99.8 5.3E-20 1.8E-24 212.3 21.7 247 126-404 46-331 (411)
46 3ro2_A PINS homolog, G-protein 99.8 1.5E-19 5E-24 201.7 23.8 283 448-782 5-335 (338)
47 3ro2_A PINS homolog, G-protein 99.8 2.1E-19 7.1E-24 200.4 23.4 100 129-228 6-114 (338)
48 2q7f_A YRRB protein; TPR, prot 99.8 3.1E-19 1.1E-23 189.1 22.8 215 127-385 22-236 (243)
49 2ond_A Cleavage stimulation fa 99.8 9.7E-19 3.3E-23 192.6 26.5 255 111-383 33-304 (308)
50 4e6h_A MRNA 3'-END-processing 99.8 6.1E-16 2.1E-20 184.8 52.2 449 112-630 50-578 (679)
51 1ouv_A Conserved hypothetical 99.8 8.2E-18 2.8E-22 181.8 33.0 231 124-410 2-256 (273)
52 1ouv_A Conserved hypothetical 99.8 8.5E-18 2.9E-22 181.6 32.8 228 158-441 2-254 (273)
53 3vtx_A MAMA; tetratricopeptide 99.8 1E-18 3.5E-23 176.3 23.8 172 82-268 4-175 (184)
54 1xnf_A Lipoprotein NLPI; TPR, 99.8 8.4E-20 2.9E-24 197.6 16.7 253 135-399 12-269 (275)
55 4abn_A Tetratricopeptide repea 99.8 1.2E-18 4.2E-23 203.6 27.7 238 83-328 54-315 (474)
56 2q7f_A YRRB protein; TPR, prot 99.8 1.1E-18 3.7E-23 184.8 24.2 216 83-316 23-238 (243)
57 2ho1_A Type 4 fimbrial biogene 99.8 3.2E-18 1.1E-22 182.5 27.9 213 123-379 31-246 (252)
58 2vq2_A PILW, putative fimbrial 99.8 7E-18 2.4E-22 176.0 29.0 141 124-268 4-147 (225)
59 2vq2_A PILW, putative fimbrial 99.8 8.9E-18 3.1E-22 175.2 29.5 218 158-416 4-222 (225)
60 2ho1_A Type 4 fimbrial biogene 99.8 4.8E-18 1.6E-22 181.1 27.8 212 198-416 38-249 (252)
61 2ond_A Cleavage stimulation fa 99.8 4.2E-18 1.4E-22 187.5 26.4 254 145-417 33-304 (308)
62 3vtx_A MAMA; tetratricopeptide 99.8 7.1E-18 2.4E-22 170.1 24.9 168 126-297 3-170 (184)
63 3ulq_A Response regulator aspa 99.8 2E-17 7E-22 188.5 29.7 191 273-463 108-318 (383)
64 4abn_A Tetratricopeptide repea 99.8 4E-18 1.4E-22 199.3 23.8 223 142-401 82-317 (474)
65 4e6h_A MRNA 3'-END-processing 99.8 6.8E-15 2.3E-19 175.8 49.1 230 542-789 326-580 (679)
66 3ulq_A Response regulator aspa 99.8 1.2E-17 4.2E-22 190.3 24.5 247 306-591 104-371 (383)
67 4i17_A Hypothetical protein; T 99.8 1.3E-16 4.4E-21 167.1 29.5 216 161-420 6-224 (228)
68 4i17_A Hypothetical protein; T 99.8 3.1E-17 1.1E-21 171.8 24.0 207 84-315 8-224 (228)
69 3qky_A Outer membrane assembly 99.8 3.1E-17 1.1E-21 175.8 23.0 219 121-396 8-252 (261)
70 4gyw_A UDP-N-acetylglucosamine 99.8 3.1E-17 1E-21 198.7 23.2 171 123-297 4-174 (723)
71 4gyw_A UDP-N-acetylglucosamine 99.7 2.6E-17 8.9E-22 199.3 21.5 174 79-267 5-178 (723)
72 1b89_A Protein (clathrin heavy 99.7 1.3E-17 4.3E-22 184.0 16.7 402 140-628 15-419 (449)
73 3qky_A Outer membrane assembly 99.7 1.7E-16 5.8E-21 170.1 24.0 213 155-427 8-250 (261)
74 3q15_A PSP28, response regulat 99.7 2.2E-16 7.4E-21 179.6 24.2 240 344-622 103-365 (378)
75 3dra_A Protein farnesyltransfe 99.7 2.9E-15 9.8E-20 161.0 30.6 220 112-332 51-285 (306)
76 3nf1_A KLC 1, kinesin light ch 99.7 1.9E-17 6.3E-22 182.5 14.1 248 520-782 22-310 (311)
77 3nf1_A KLC 1, kinesin light ch 99.7 2.4E-17 8.2E-22 181.6 14.7 252 123-408 22-310 (311)
78 3q15_A PSP28, response regulat 99.7 2.7E-15 9.4E-20 170.4 31.2 193 271-463 104-315 (378)
79 1hz4_A MALT regulatory protein 99.7 4.5E-15 1.5E-19 168.4 30.8 278 129-441 15-325 (373)
80 1hz4_A MALT regulatory protein 99.7 5.1E-15 1.7E-19 167.9 30.6 290 163-483 15-328 (373)
81 1b89_A Protein (clathrin heavy 99.7 3.3E-16 1.1E-20 172.7 19.9 361 269-744 33-414 (449)
82 3dra_A Protein farnesyltransfe 99.7 4.9E-15 1.7E-19 159.1 27.7 242 139-418 43-301 (306)
83 4ga2_A E3 SUMO-protein ligase 99.7 1E-16 3.4E-21 155.1 13.0 139 107-246 10-149 (150)
84 3as5_A MAMA; tetratricopeptide 99.7 3.6E-15 1.2E-19 149.8 22.4 172 82-268 7-178 (186)
85 4ga2_A E3 SUMO-protein ligase 99.7 8.8E-17 3E-21 155.5 10.0 146 134-283 3-149 (150)
86 2pzi_A Probable serine/threoni 99.7 8.3E-16 2.8E-20 187.8 19.6 200 122-332 388-596 (681)
87 3urz_A Uncharacterized protein 99.7 1.9E-15 6.6E-20 155.3 19.3 167 127-296 3-185 (208)
88 1qqe_A Vesicular transport pro 99.7 2.9E-15 9.8E-20 163.2 20.8 256 112-420 3-284 (292)
89 2yhc_A BAMD, UPF0169 lipoprote 99.7 5.7E-15 1.9E-19 154.0 21.8 207 127-409 3-217 (225)
90 1qqe_A Vesicular transport pro 99.7 3.1E-15 1.1E-19 162.9 20.4 242 146-441 3-272 (292)
91 3as5_A MAMA; tetratricopeptide 99.6 7.8E-15 2.7E-19 147.3 21.4 167 128-298 8-174 (186)
92 3urz_A Uncharacterized protein 99.6 5.2E-15 1.8E-19 152.0 20.1 169 39-229 3-189 (208)
93 4gco_A Protein STI-1; structur 99.6 2.3E-15 7.9E-20 140.3 15.3 121 119-240 4-124 (126)
94 2pzi_A Probable serine/threoni 99.6 3E-15 1E-19 182.9 20.1 173 107-284 404-584 (681)
95 3dss_A Geranylgeranyl transfer 99.6 2.4E-13 8.2E-18 146.5 31.1 167 112-279 48-238 (331)
96 2yhc_A BAMD, UPF0169 lipoprote 99.6 2.4E-14 8.2E-19 149.2 22.9 205 161-441 3-216 (225)
97 3edt_B KLC 2, kinesin light ch 99.6 5.7E-15 2E-19 159.8 18.2 153 107-263 21-198 (283)
98 3edt_B KLC 2, kinesin light ch 99.6 2.1E-14 7.1E-19 155.3 19.9 212 265-477 40-281 (283)
99 3q7a_A Farnesyltransferase alp 99.6 5.2E-13 1.8E-17 144.3 29.4 172 112-284 72-258 (349)
100 3gyz_A Chaperone protein IPGC; 99.6 7.8E-15 2.7E-19 140.8 13.3 119 112-231 20-138 (151)
101 3dss_A Geranylgeranyl transfer 99.6 4.5E-13 1.5E-17 144.4 28.5 253 139-420 40-319 (331)
102 2r5s_A Uncharacterized protein 99.6 1.4E-14 4.7E-19 144.5 14.6 167 124-295 2-171 (176)
103 2r5s_A Uncharacterized protein 99.6 1.5E-14 5E-19 144.4 13.6 171 556-743 3-173 (176)
104 3qou_A Protein YBBN; thioredox 99.6 6.2E-14 2.1E-18 151.9 19.6 168 125-296 114-283 (287)
105 4gco_A Protein STI-1; structur 99.6 2.6E-14 9E-19 133.1 14.3 120 154-277 5-124 (126)
106 3q7a_A Farnesyltransferase alp 99.6 8.5E-13 2.9E-17 142.7 26.8 245 520-783 49-336 (349)
107 2vsy_A XCC0866; transferase, g 99.5 1.1E-13 3.7E-18 166.5 19.1 164 108-275 3-169 (568)
108 3qou_A Protein YBBN; thioredox 99.5 3.9E-13 1.3E-17 145.6 21.2 173 554-743 112-284 (287)
109 2vgx_A Chaperone SYCD; alterna 99.5 6.9E-14 2.4E-18 134.5 12.6 121 113-234 6-126 (148)
110 3gyz_A Chaperone protein IPGC; 99.5 5.7E-14 1.9E-18 134.7 10.3 116 149-268 23-138 (151)
111 1p5q_A FKBP52, FK506-binding p 99.5 8.2E-15 2.8E-19 162.7 4.6 183 108-295 79-292 (336)
112 2xcb_A PCRH, regulatory protei 99.5 1.9E-13 6.6E-18 130.6 13.2 126 114-240 4-129 (142)
113 2ifu_A Gamma-SNAP; membrane fu 99.5 1.5E-12 5.3E-17 142.6 21.6 230 107-397 4-253 (307)
114 2ifu_A Gamma-SNAP; membrane fu 99.5 4.1E-13 1.4E-17 147.2 16.8 166 421-625 48-226 (307)
115 4f3v_A ESX-1 secretion system 99.5 3.7E-13 1.3E-17 140.6 14.8 206 201-418 11-249 (282)
116 4f3v_A ESX-1 secretion system 99.5 2.4E-13 8.3E-18 142.0 12.3 230 130-384 9-249 (282)
117 2uy1_A Cleavage stimulation fa 99.4 3.4E-10 1.2E-14 131.7 39.3 209 358-621 195-412 (493)
118 2vsy_A XCC0866; transferase, g 99.4 1.4E-12 4.6E-17 156.9 19.5 155 141-299 2-159 (568)
119 2fo7_A Synthetic consensus TPR 99.4 4.9E-12 1.7E-16 119.0 19.4 134 129-266 2-135 (136)
120 1p5q_A FKBP52, FK506-binding p 99.4 3.8E-13 1.3E-17 149.2 12.1 149 111-263 130-294 (336)
121 2fo7_A Synthetic consensus TPR 99.4 6.5E-12 2.2E-16 118.1 19.1 134 85-230 3-136 (136)
122 3upv_A Heat shock protein STI1 99.4 2.7E-12 9.3E-17 119.7 15.8 117 125-242 1-123 (126)
123 2vgx_A Chaperone SYCD; alterna 99.4 5.3E-13 1.8E-17 128.3 11.0 120 147-270 6-125 (148)
124 3rjv_A Putative SEL1 repeat pr 99.4 8.1E-12 2.8E-16 128.4 20.1 174 112-297 4-197 (212)
125 2c2l_A CHIP, carboxy terminus 99.4 1.1E-12 3.8E-17 141.4 13.5 196 125-332 1-197 (281)
126 2e2e_A Formate-dependent nitri 99.4 2.9E-12 1E-16 127.7 14.7 130 107-237 23-155 (177)
127 3rjv_A Putative SEL1 repeat pr 99.4 1.3E-11 4.3E-16 127.0 19.8 172 253-438 5-197 (212)
128 1dce_A Protein (RAB geranylger 99.4 1.3E-11 4.5E-16 145.7 21.6 175 111-286 46-244 (567)
129 2xcb_A PCRH, regulatory protei 99.4 1.2E-12 4.2E-17 124.9 10.3 121 149-273 5-125 (142)
130 1a17_A Serine/threonine protei 99.4 3E-11 1E-15 118.6 20.3 132 128-263 13-146 (166)
131 3sz7_A HSC70 cochaperone (SGT) 99.4 5.9E-12 2E-16 123.6 14.8 118 124-242 7-124 (164)
132 2c2l_A CHIP, carboxy terminus 99.3 3.9E-12 1.4E-16 137.1 13.7 194 83-296 4-198 (281)
133 2lni_A Stress-induced-phosphop 99.3 9.7E-12 3.3E-16 116.8 14.5 121 124-245 12-132 (133)
134 3mv2_B Coatomer subunit epsilo 99.3 2.3E-11 8E-16 128.7 18.7 225 526-786 46-289 (310)
135 1hh8_A P67PHOX, NCF-2, neutrop 99.3 2.6E-11 8.8E-16 124.9 18.8 131 130-267 8-154 (213)
136 2e2e_A Formate-dependent nitri 99.3 5.2E-12 1.8E-16 125.8 12.9 131 137-271 19-152 (177)
137 1hh8_A P67PHOX, NCF-2, neutrop 99.3 3.8E-11 1.3E-15 123.6 19.8 134 83-230 6-154 (213)
138 3upv_A Heat shock protein STI1 99.3 2E-11 6.7E-16 113.7 15.8 116 159-278 1-122 (126)
139 2vyi_A SGTA protein; chaperone 99.3 2.1E-11 7E-16 114.0 15.8 122 124-246 8-129 (131)
140 3mv2_B Coatomer subunit epsilo 99.3 3.1E-10 1.1E-14 120.1 26.3 247 48-333 21-281 (310)
141 2fbn_A 70 kDa peptidylprolyl i 99.3 3.2E-12 1.1E-16 130.1 10.6 139 112-254 22-176 (198)
142 1a17_A Serine/threonine protei 99.3 4.7E-11 1.6E-15 117.1 18.6 135 80-226 10-146 (166)
143 2fbn_A 70 kDa peptidylprolyl i 99.3 3.1E-12 1.1E-16 130.2 9.6 156 130-288 6-176 (198)
144 1na0_A Designed protein CTPR3; 99.3 7E-11 2.4E-15 109.2 18.1 120 124-244 4-124 (125)
145 2uy1_A Cleavage stimulation fa 99.3 3.2E-09 1.1E-13 123.4 36.0 208 542-778 196-412 (493)
146 3q49_B STIP1 homology and U bo 99.3 4.4E-11 1.5E-15 113.1 16.4 121 123-244 4-129 (137)
147 4gcn_A Protein STI-1; structur 99.3 4E-11 1.4E-15 111.6 15.2 102 128-229 8-115 (127)
148 1hxi_A PEX5, peroxisome target 99.3 2.1E-11 7.2E-16 112.4 13.0 103 129-232 18-120 (121)
149 2qfc_A PLCR protein; TPR, HTH, 99.3 9.1E-11 3.1E-15 127.6 20.2 193 20-226 54-266 (293)
150 3sz7_A HSC70 cochaperone (SGT) 99.3 5.4E-11 1.9E-15 116.7 16.6 117 671-794 7-123 (164)
151 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 2.8E-13 9.7E-18 157.0 0.0 176 109-289 201-406 (457)
152 1elw_A TPR1-domain of HOP; HOP 99.3 1.1E-10 3.9E-15 106.6 16.8 114 127-241 3-116 (118)
153 2qfc_A PLCR protein; TPR, HTH, 99.3 3E-10 1E-14 123.4 23.0 182 555-749 71-272 (293)
154 2lni_A Stress-induced-phosphop 99.3 6.4E-11 2.2E-15 111.1 15.3 122 158-283 12-133 (133)
155 2vyi_A SGTA protein; chaperone 99.3 1.2E-10 4.2E-15 108.6 17.2 122 80-213 9-130 (131)
156 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 6.6E-12 2.3E-16 145.5 9.9 147 111-261 251-413 (457)
157 3rkv_A Putative peptidylprolyl 99.2 7.3E-11 2.5E-15 115.5 15.0 117 128-245 11-146 (162)
158 2hr2_A Hypothetical protein; a 99.2 3.4E-11 1.2E-15 113.4 11.9 106 128-234 11-139 (159)
159 2dba_A Smooth muscle cell asso 99.2 2.1E-10 7.2E-15 109.9 16.2 119 122-241 22-143 (148)
160 2xev_A YBGF; tetratricopeptide 99.2 2.7E-10 9.2E-15 106.3 16.5 115 129-243 3-122 (129)
161 1na0_A Designed protein CTPR3; 99.2 4.5E-10 1.6E-14 103.7 17.9 121 158-282 4-125 (125)
162 3u3w_A Transcriptional activat 99.2 2E-10 6.8E-15 124.9 17.6 168 565-745 81-268 (293)
163 3q49_B STIP1 homology and U bo 99.2 1.7E-10 6E-15 108.9 15.0 118 156-277 3-125 (137)
164 1hxi_A PEX5, peroxisome target 99.2 1.5E-10 5.3E-15 106.5 14.1 101 164-268 19-119 (121)
165 2kck_A TPR repeat; tetratricop 99.2 1.1E-10 3.8E-15 105.5 12.9 107 123-230 1-110 (112)
166 3u3w_A Transcriptional activat 99.2 1.8E-10 6E-15 125.3 16.8 170 274-443 81-271 (293)
167 4b4t_Q 26S proteasome regulato 99.2 1.1E-09 3.9E-14 126.5 24.6 207 346-589 8-246 (434)
168 1dce_A Protein (RAB geranylger 99.2 7.2E-10 2.5E-14 130.9 22.9 171 143-320 44-241 (567)
169 4gcn_A Protein STI-1; structur 99.2 1.8E-10 6E-15 107.2 13.3 105 80-195 5-116 (127)
170 3rkv_A Putative peptidylprolyl 99.2 1.7E-10 5.9E-15 112.8 13.3 115 162-280 11-144 (162)
171 3gw4_A Uncharacterized protein 99.2 2.6E-10 8.7E-15 116.2 14.9 176 604-794 3-190 (203)
172 2hr2_A Hypothetical protein; a 99.2 1.9E-10 6.4E-15 108.3 12.4 106 162-270 11-138 (159)
173 1elw_A TPR1-domain of HOP; HOP 99.2 9.5E-10 3.3E-14 100.3 16.5 114 161-278 3-116 (118)
174 4b4t_Q 26S proteasome regulato 99.1 3.2E-09 1.1E-13 122.7 24.8 204 127-333 3-244 (434)
175 3gw4_A Uncharacterized protein 99.1 5.7E-10 1.9E-14 113.6 16.1 158 317-477 4-176 (203)
176 1zu2_A Mitochondrial import re 99.1 1.9E-10 6.5E-15 108.0 11.3 106 104-233 12-127 (158)
177 1elr_A TPR2A-domain of HOP; HO 99.1 7.5E-10 2.6E-14 103.2 14.7 118 127-245 3-126 (131)
178 2xev_A YBGF; tetratricopeptide 99.1 1.3E-09 4.4E-14 101.6 15.7 114 163-279 3-121 (129)
179 2if4_A ATFKBP42; FKBP-like, al 99.1 9.2E-11 3.1E-15 130.0 9.0 139 126-268 177-333 (338)
180 2kck_A TPR repeat; tetratricop 99.1 4.4E-10 1.5E-14 101.5 11.8 109 671-784 2-111 (112)
181 2dba_A Smooth muscle cell asso 99.1 1.6E-09 5.4E-14 103.7 15.9 119 157-278 23-143 (148)
182 1wao_1 Serine/threonine protei 99.1 4.5E-11 1.6E-15 138.9 5.4 136 128-267 6-154 (477)
183 1wao_1 Serine/threonine protei 99.1 2.2E-11 7.4E-16 141.6 1.6 125 108-233 20-157 (477)
184 1elr_A TPR2A-domain of HOP; HO 99.1 2E-09 6.8E-14 100.3 14.8 120 673-798 2-126 (131)
185 2if4_A ATFKBP42; FKBP-like, al 99.1 2.1E-10 7.3E-15 127.0 8.7 141 80-232 176-334 (338)
186 1ihg_A Cyclophilin 40; ppiase 99.0 1.7E-09 5.9E-14 120.9 16.0 117 129-246 224-356 (370)
187 1zu2_A Mitochondrial import re 99.0 6E-10 2.1E-14 104.6 10.0 112 141-277 15-134 (158)
188 3k9i_A BH0479 protein; putativ 99.0 4.2E-10 1.4E-14 103.0 8.6 88 108-195 4-94 (117)
189 3k9i_A BH0479 protein; putativ 99.0 4E-10 1.4E-14 103.1 8.0 95 140-235 2-99 (117)
190 3ro3_A PINS homolog, G-protein 99.0 3.4E-09 1.2E-13 102.9 13.2 141 629-782 10-161 (164)
191 1ihg_A Cyclophilin 40; ppiase 99.0 3.7E-09 1.2E-13 118.3 14.5 124 162-289 223-362 (370)
192 3ro3_A PINS homolog, G-protein 98.9 5.1E-09 1.7E-13 101.7 12.4 136 81-227 7-159 (164)
193 2kat_A Uncharacterized protein 98.9 2E-08 6.8E-13 91.3 12.6 101 659-764 3-103 (115)
194 2kat_A Uncharacterized protein 98.8 3.6E-08 1.2E-12 89.6 12.5 83 112-194 3-85 (115)
195 1na3_A Designed protein CTPR2; 98.8 6.1E-08 2.1E-12 83.5 11.7 83 127-210 8-90 (91)
196 2l6j_A TPR repeat-containing p 98.7 6.9E-09 2.4E-13 93.5 5.0 94 128-221 4-102 (111)
197 1na3_A Designed protein CTPR2; 98.7 9.5E-08 3.2E-12 82.3 11.8 84 160-244 7-90 (91)
198 4g26_A Pentatricopeptide repea 98.7 6.1E-07 2.1E-11 104.1 21.8 178 595-781 28-206 (501)
199 2l6j_A TPR repeat-containing p 98.7 1.2E-08 4E-13 92.0 5.3 85 161-246 3-93 (111)
200 4g26_A Pentatricopeptide repea 98.7 1.3E-06 4.5E-11 101.3 23.8 184 561-762 28-222 (501)
201 3ma5_A Tetratricopeptide repea 98.7 7.3E-08 2.5E-12 84.9 10.0 89 670-763 2-90 (100)
202 3ma5_A Tetratricopeptide repea 98.6 7.2E-08 2.5E-12 85.0 8.8 71 124-194 3-73 (100)
203 1klx_A Cysteine rich protein B 98.6 4.4E-07 1.5E-11 85.3 14.5 120 655-791 9-136 (138)
204 2kc7_A BFR218_protein; tetratr 98.6 1E-07 3.4E-12 83.8 7.8 64 132-195 4-68 (99)
205 3ly7_A Transcriptional activat 98.6 1.8E-06 6.3E-11 92.8 18.5 144 120-268 186-344 (372)
206 1klx_A Cysteine rich protein B 98.5 1.9E-06 6.4E-11 80.9 16.2 121 107-238 8-136 (138)
207 2kc7_A BFR218_protein; tetratr 98.5 2.3E-07 7.7E-12 81.5 8.9 91 165-267 3-94 (99)
208 3u64_A Protein TP_0956; tetrat 98.5 2.4E-05 8.2E-10 80.4 23.4 106 520-625 147-272 (301)
209 3ly7_A Transcriptional activat 98.5 2.3E-06 8E-11 92.0 16.0 123 108-232 213-345 (372)
210 3n71_A Histone lysine methyltr 98.4 1.5E-06 5.3E-11 99.7 13.9 125 278-402 319-461 (490)
211 3bee_A Putative YFRE protein; 98.4 1.5E-06 5.1E-11 74.6 9.8 72 124-195 2-76 (93)
212 3u64_A Protein TP_0956; tetrat 98.4 4.4E-05 1.5E-09 78.4 21.6 189 543-746 50-272 (301)
213 3n71_A Histone lysine methyltr 98.4 3.2E-06 1.1E-10 97.1 14.9 129 348-476 315-463 (490)
214 2v5f_A Prolyl 4-hydroxylase su 98.3 3.6E-06 1.2E-10 74.4 11.3 84 713-797 4-92 (104)
215 1pc2_A Mitochondria fission pr 98.3 6.1E-06 2.1E-10 76.4 11.8 94 145-238 15-112 (152)
216 3bee_A Putative YFRE protein; 98.2 8.2E-06 2.8E-10 69.9 10.8 72 158-230 2-76 (93)
217 1pc2_A Mitochondria fission pr 98.1 1.8E-05 6E-10 73.3 12.1 88 108-195 12-104 (152)
218 2v5f_A Prolyl 4-hydroxylase su 98.0 5.9E-05 2E-09 66.5 11.6 77 162-238 5-87 (104)
219 3qww_A SET and MYND domain-con 97.8 0.00014 4.6E-09 82.1 13.6 89 317-405 310-411 (433)
220 4ady_A RPN2, 26S proteasome re 97.8 0.11 3.6E-06 63.0 38.2 243 526-797 377-639 (963)
221 1nzn_A CGI-135 protein, fissio 97.8 0.00019 6.6E-09 63.7 11.2 97 144-240 17-117 (126)
222 3qww_A SET and MYND domain-con 97.7 0.00016 5.3E-09 81.6 12.2 104 460-598 310-426 (433)
223 3qwp_A SET and MYND domain-con 97.7 0.00019 6.5E-09 81.1 12.6 94 278-371 297-400 (429)
224 1nzn_A CGI-135 protein, fissio 97.7 0.00017 5.8E-09 64.1 9.3 93 693-792 19-116 (126)
225 3qwp_A SET and MYND domain-con 97.6 0.00046 1.6E-08 78.0 14.8 107 456-597 295-414 (429)
226 4h7y_A Dual specificity protei 97.4 0.0021 7.2E-08 58.1 12.1 108 520-628 8-129 (161)
227 4ady_A RPN2, 26S proteasome re 97.3 0.6 2.1E-05 56.5 45.6 44 200-245 233-276 (963)
228 3ffl_A Anaphase-promoting comp 97.3 0.0011 3.7E-08 61.7 9.6 112 129-241 21-165 (167)
229 4h7y_A Dual specificity protei 97.2 0.0076 2.6E-07 54.6 14.0 105 123-229 8-126 (161)
230 1y8m_A FIS1; mitochondria, unk 97.2 0.0082 2.8E-07 54.1 13.7 79 712-792 37-119 (144)
231 1y8m_A FIS1; mitochondria, unk 97.1 0.013 4.4E-07 52.8 14.0 81 159-239 36-119 (144)
232 3ffl_A Anaphase-promoting comp 97.1 0.0035 1.2E-07 58.2 10.7 138 270-420 22-165 (167)
233 3txn_A 26S proteasome regulato 97.0 0.19 6.4E-06 55.1 26.1 171 41-226 20-210 (394)
234 3o48_A Mitochondria fission 1 97.0 0.005 1.7E-07 54.7 10.9 79 712-792 38-120 (134)
235 3o48_A Mitochondria fission 1 96.9 0.018 6.1E-07 51.2 13.3 82 160-241 38-122 (134)
236 3txn_A 26S proteasome regulato 96.6 0.19 6.6E-06 55.0 21.6 264 524-802 18-307 (394)
237 3kae_A CDC27, possible protein 96.1 0.35 1.2E-05 44.3 16.7 115 125-269 30-149 (242)
238 4gns_B Protein CSD3, chitin bi 96.0 1.8 6E-05 51.6 27.2 111 111-223 266-397 (754)
239 3spa_A Mtrpol, DNA-directed RN 96.0 0.028 9.7E-07 67.9 11.9 82 560-642 128-213 (1134)
240 3spa_A Mtrpol, DNA-directed RN 96.0 0.051 1.8E-06 65.7 14.0 107 674-782 126-233 (1134)
241 1qsa_A Protein (soluble lytic 95.7 3.2 0.00011 48.5 27.5 142 42-213 8-152 (618)
242 3kae_A CDC27, possible protein 95.0 2.1 7.1E-05 39.4 21.5 99 306-412 34-150 (242)
243 4gns_B Protein CSD3, chitin bi 94.4 0.13 4.3E-06 61.4 10.5 60 129-188 338-397 (754)
244 1qsa_A Protein (soluble lytic 94.1 11 0.00039 43.9 38.4 398 129-582 7-436 (618)
245 3mkq_A Coatomer beta'-subunit; 94.0 3.9 0.00013 50.2 23.9 101 135-260 606-707 (814)
246 4b4t_R RPN7, 26S proteasome re 93.8 0.5 1.7E-05 53.1 13.7 107 675-783 131-241 (429)
247 3mkq_A Coatomer beta'-subunit; 92.9 1.1 3.7E-05 55.4 16.1 27 592-618 680-706 (814)
248 3mkq_B Coatomer subunit alpha; 92.6 3 0.0001 39.5 14.5 45 173-223 16-60 (177)
249 4b4t_P 26S proteasome regulato 92.5 3.6 0.00012 46.2 18.1 101 377-477 138-247 (445)
250 4b4t_P 26S proteasome regulato 91.9 4.4 0.00015 45.5 18.0 103 678-780 140-248 (445)
251 4b4t_R RPN7, 26S proteasome re 91.9 0.83 2.8E-05 51.3 11.9 121 108-228 111-239 (429)
252 1zbp_A Hypothetical protein VP 91.7 0.93 3.2E-05 45.9 10.6 117 107-230 10-133 (273)
253 3lpz_A GET4 (YOR164C homolog); 91.5 16 0.00054 38.6 24.6 218 42-281 37-295 (336)
254 3mkq_B Coatomer subunit alpha; 90.8 5.2 0.00018 37.8 14.1 26 306-331 35-60 (177)
255 1zbp_A Hypothetical protein VP 90.8 3 0.0001 42.2 13.2 58 138-195 7-64 (273)
256 4fhn_B Nucleoporin NUP120; pro 90.5 10 0.00036 48.4 21.6 88 268-359 899-988 (1139)
257 4b4t_S RPN3, 26S proteasome re 89.9 1.1 3.7E-05 50.3 10.1 129 655-785 150-305 (523)
258 2ff4_A Probable regulatory pro 89.8 2.9 0.0001 46.0 13.6 89 134-223 121-231 (388)
259 2wpv_A GET4, UPF0363 protein Y 89.8 21 0.00073 37.3 19.4 27 41-67 34-60 (312)
260 4fhn_B Nucleoporin NUP120; pro 88.1 18 0.00063 46.1 21.2 144 133-284 817-987 (1139)
261 4b4t_S RPN3, 26S proteasome re 88.0 5.1 0.00017 45.0 13.7 29 345-373 273-301 (523)
262 2ff4_A Probable regulatory pro 87.1 5.2 0.00018 44.0 13.4 61 130-190 173-233 (388)
263 3lvg_A Clathrin heavy chain 1; 86.8 4E-05 1.4E-09 83.2 -26.6 265 126-430 52-325 (624)
264 3lpz_A GET4 (YOR164C homolog); 84.9 42 0.0014 35.3 28.2 142 522-688 133-295 (336)
265 1ya0_A SMG-7 transcript varian 84.8 3.7 0.00013 46.5 10.7 77 344-420 154-230 (497)
266 1ya0_A SMG-7 transcript varian 83.8 3.5 0.00012 46.7 10.0 80 526-605 153-232 (497)
267 3lvg_A Clathrin heavy chain 1; 73.2 0.00063 2.2E-08 74.1 -23.2 269 160-470 52-326 (624)
268 1wy6_A Hypothetical protein ST 67.7 68 0.0023 28.6 12.0 114 655-780 21-155 (172)
269 1wy6_A Hypothetical protein ST 66.8 71 0.0024 28.5 14.0 143 43-192 10-155 (172)
270 2qx5_A Nucleoporin NIC96; mRNA 54.5 3.1E+02 0.011 31.9 18.2 77 347-435 299-382 (661)
271 1ko6_B Nuclear pore complex pr 53.1 4.2 0.00014 30.4 0.9 17 1026-1042 3-19 (64)
272 3esl_A Checkpoint serine/threo 49.7 1.8E+02 0.0063 27.9 13.6 53 688-743 92-144 (202)
273 2qx5_A Nucleoporin NIC96; mRNA 49.3 1.2E+02 0.004 35.6 12.7 100 148-260 281-382 (661)
274 4gq2_M Nucleoporin NUP120; bet 47.7 2.1E+02 0.0072 35.3 15.6 50 135-188 817-866 (950)
275 2wpv_A GET4, UPF0363 protein Y 43.4 3E+02 0.01 28.6 29.1 27 523-549 132-158 (312)
276 4gq2_M Nucleoporin NUP120; bet 40.2 78 0.0027 39.2 10.1 38 665-702 830-867 (950)
277 2ijq_A Hypothetical protein; s 38.4 1.1E+02 0.0038 28.2 8.2 61 131-191 35-104 (161)
278 3mv2_A Coatomer subunit alpha; 36.8 97 0.0033 32.2 8.3 25 44-68 118-142 (325)
279 2w2u_A Hypothetical P60 katani 35.6 49 0.0017 26.7 4.7 18 726-743 31-48 (83)
280 2w2u_A Hypothetical P60 katani 34.7 47 0.0016 26.8 4.5 15 174-188 31-45 (83)
281 2v6y_A AAA family ATPase, P60 34.6 51 0.0018 26.5 4.7 18 726-743 23-40 (83)
282 3re2_A Predicted protein; meni 34.4 3.4E+02 0.012 28.4 11.6 81 679-779 239-325 (472)
283 4aez_C MAD3, mitotic spindle c 34.2 1.8E+02 0.0061 28.5 9.3 51 691-744 130-180 (223)
284 2v6y_A AAA family ATPase, P60 33.3 50 0.0017 26.6 4.5 16 174-189 23-38 (83)
285 3t5v_B Nuclear mRNA export pro 32.9 99 0.0034 34.3 8.3 68 83-161 176-254 (455)
286 3bu8_A Telomeric repeat-bindin 32.2 3.3E+02 0.011 26.3 10.3 128 40-173 16-159 (235)
287 3rk3_E Complexin-1; snare prot 32.1 1.5E+02 0.005 21.6 6.1 10 893-902 19-28 (63)
288 3u84_A Menin; MLL, JUND, ledgf 32.1 3.7E+02 0.013 28.8 11.6 81 679-779 261-347 (550)
289 3ax2_A Mitochondrial import re 31.3 1E+02 0.0035 24.0 5.7 29 347-375 22-50 (73)
290 3t5v_B Nuclear mRNA export pro 30.9 1.8E+02 0.0063 32.1 10.1 71 677-747 178-254 (455)
291 3ax2_A Mitochondrial import re 30.0 1.1E+02 0.0039 23.8 5.7 29 202-230 22-50 (73)
292 2wvi_A Mitotic checkpoint seri 29.8 3.3E+02 0.011 25.1 9.9 49 692-743 77-125 (164)
293 3t5x_A PCI domain-containing p 29.6 41 0.0014 32.7 4.0 52 715-766 15-69 (203)
294 2cpt_A SKD1 protein, vacuolar 26.5 2.8E+02 0.0094 23.9 8.3 18 726-743 30-47 (117)
295 3t5x_A PCI domain-containing p 25.0 1.2E+02 0.0041 29.3 6.5 33 129-161 15-47 (203)
296 4aez_C MAD3, mitotic spindle c 25.0 3.1E+02 0.011 26.8 9.2 87 694-782 96-182 (223)
297 2uwj_G Type III export protein 24.2 3.1E+02 0.011 22.9 10.0 76 142-224 20-95 (115)
298 2p58_C Putative type III secre 23.9 3.2E+02 0.011 22.8 11.6 75 142-223 21-95 (116)
299 3v6i_B V-type ATP synthase, su 23.5 3.1E+02 0.011 22.6 10.0 9 878-886 18-26 (105)
300 1g70_B RSG-1.2 peptide; peptid 23.0 31 0.0011 19.5 1.0 12 1038-1049 7-18 (26)
301 2ijq_A Hypothetical protein; s 22.9 3E+02 0.01 25.3 8.2 60 166-225 36-103 (161)
302 1o9d_A 14-3-3-like protein C; 22.8 5.8E+02 0.02 25.5 17.0 176 525-704 8-207 (260)
303 1wfd_A Hypothetical protein 15 22.3 1.1E+02 0.0038 25.2 4.7 18 726-743 27-44 (93)
304 3u84_A Menin; MLL, JUND, ledgf 22.1 5.1E+02 0.018 27.7 10.5 122 42-189 219-345 (550)
305 1wfd_A Hypothetical protein 15 22.0 1E+02 0.0035 25.4 4.5 16 174-189 27-42 (93)
306 4a1g_A Mitotic checkpoint seri 21.5 4.6E+02 0.016 23.8 14.3 50 691-743 81-130 (152)
307 1o9d_A 14-3-3-like protein C; 21.4 6.2E+02 0.021 25.3 17.8 62 128-189 8-73 (260)
308 3bu8_A Telomeric repeat-bindin 21.1 1.7E+02 0.0059 28.2 6.2 14 655-668 33-46 (235)
309 2wvi_A Mitotic checkpoint seri 21.0 4.9E+02 0.017 23.9 11.6 52 731-782 77-128 (164)
310 3esl_A Checkpoint serine/threo 20.3 5.7E+02 0.02 24.4 14.1 85 696-781 58-146 (202)
311 2cwy_A Hypothetical protein TT 20.3 2.7E+02 0.0092 22.9 6.7 57 132-190 5-67 (94)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-38 Score=383.79 Aligned_cols=509 Identities=12% Similarity=0.015 Sum_probs=406.3
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHH
Q 001357 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1093)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1093)
|......+..++..+.+.|++++|+..|.+++...|++ ..++.++.++...|+ +.+|+..|.+++.. |.++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~~~~~~~~ 154 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGD---YARAKCLLTKEDLY-NRSSACRY 154 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTC---HHHHHHHHHHTCGG-GTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCc---HHHHHHHHHHHhcc-ccchhHHH
Confidence 43335556677777777777777777777777777743 556667777777776 77777777766543 45566666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 001357 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1093)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1093)
.++.+|...|++++|+.+|++.. |..... ..+...+ ......+....+++.+|.+|
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~-----~~~~~~~-------------~~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETN------PFRKDE-----KNANKLL-------------MQDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSC------TTC----------------------------CCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhccC------Cccccc-----ccccccc-------------ccccccchhHHHHHHHHHHH
Confidence 66666666666666666665321 111000 0000000 00011234567899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH---HHHHHHhCCCC-HHHHHHHHHHH-hcCCHHH
Q 001357 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL---LRKAAKIDPRD-AQAFIDLGELL-ISSDTGA 427 (1093)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~---l~~~l~~~p~~-~~~~~~la~~~-~~~~~~~ 427 (1093)
...|++++|+.+|++++..+|.+..++..++.++...+....+... +..+...++.. ...+..++..| ..|++++
T Consensus 211 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence 9999999999999999999999999999998877665443332221 22332222211 22334446666 7889999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001357 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (1093)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1093)
|+..|.+++.. + .+..+++.++.++...|++++|+.+|++++..
T Consensus 291 A~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------------ 334 (597)
T 2xpi_A 291 AEDYLSSINGL-E-----KSSDLLLCKADTLFVRSRFIDVLAITTKILEI------------------------------ 334 (597)
T ss_dssp HHHHHHTSTTG-G-----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHhhcC-C-----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc------------------------------
Confidence 99999887765 2 25889999999999999999999999999873
Q ss_pred hhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 508 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587 (1093)
Q Consensus 508 ~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 587 (1093)
.|.+..++..++.++...|++++|..++..++...|.++.++..++.++...|++++|+.+|++++.
T Consensus 335 -------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 335 -------------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp -------------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Q 001357 588 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667 (1093)
Q Consensus 588 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 667 (1093)
.+|.+..+|..++.+|...|++++|+..|++++...|. +..++..++.+ |... |++++|+.+|+++
T Consensus 402 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 402 MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQ-HMQL------------GNILLANEYLQSS 467 (597)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHH-HHHH------------TCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHH-HHHc------------CCHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876 77888889999 9988 9999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCC-CCCc-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhc
Q 001357 668 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQM-PDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1093)
Q Consensus 668 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 745 (1093)
+...|.++.+++.+|.++...|++++|+.+|+++++..|... .+.. ..+|.++|.+|...|++++|+..|++++..
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 545 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-- 545 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 999999999999999999999999999999999999865311 1132 789999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHH
Q 001357 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795 (1093)
Q Consensus 746 ~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~ 795 (1093)
.+.++.++..+|.+|...|++++|..+|+++++++|+++.++++++.+|.
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999998764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-37 Score=375.33 Aligned_cols=480 Identities=13% Similarity=0.075 Sum_probs=408.6
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
+..+..++..|...|... +|+.+|.+++...|+ ...++.+|.++...|++++|+..|++++.. |.++
T Consensus 84 ~~~~~~~~~~~~~~g~~~-----------~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~ 150 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYK-----------CAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSS 150 (597)
T ss_dssp HHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCH
T ss_pred HHHHHHHHHHHHHccCch-----------HHHHHHHHHHhhCCC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccch
Confidence 456788888888888776 999999999998884 477889999999999999999999998654 6789
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSC------------------PGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al 224 (1093)
.++..++.+|.+.|++++|+.+|+++ .|.. ...+++.+|.+|.+.|++++|+..|++++
T Consensus 151 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 227 (597)
T 2xpi_A 151 ACRYLAAFCLVKLYDWQGALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHhcc---CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999863 3443 36789999999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhhhHHhHHHHHH--H-HHHHHHhCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC
Q 001357 225 QLDPENVEALVALAVMDLQANEAAGIRKGME--K-MQRAFEIYPYC-AMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300 (1093)
Q Consensus 225 ~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~--~-~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 300 (1093)
..+|.+..++..++.++...+. ...+.. . +......++.. ..++..++..|...|++++|..++..++..
T Consensus 228 ~~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--- 301 (597)
T 2xpi_A 228 MVDAKCYEAFDQLVSNHLLTAD---EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--- 301 (597)
T ss_dssp HHCTTCHHHHHHHHHTTCSCHH---HHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG---
T ss_pred HhCchhhHHHHHHHHhhcccch---hHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC---
Confidence 9999999999999887765544 222111 1 33333333222 223444577788889999999999988765
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001357 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380 (1093)
Q Consensus 301 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 380 (1093)
+.+..+++.++.+|...|++++|+.+|.+++. ..|....++..++.++...|++++|+..|.+++...|.+..++.
T Consensus 302 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 377 (597)
T 2xpi_A 302 -EKSSDLLLCKADTLFVRSRFIDVLAITTKILE---IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWL 377 (597)
T ss_dssp -GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred -CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 46678999999999999999999999999987 34556777889999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 001357 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF 459 (1093)
Q Consensus 381 ~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~ 459 (1093)
.+|.+|...|++++|+.+|++++...|.+..+|..++.++ ..|++++|+..|++++...+. ...+++.+|.+|.
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-----THLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-----CSHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999998876543 4678889999999
Q ss_pred HcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcC
Q 001357 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539 (1093)
Q Consensus 460 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g 539 (1093)
..|++++|+.+|++++. ..|.++.++..++.++...|
T Consensus 453 ~~g~~~~A~~~~~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~g 489 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYA-------------------------------------------LFQYDPLLLNELGVVAFNKS 489 (597)
T ss_dssp HHTCHHHHHHHHHHHHH-------------------------------------------HCCCCHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHH-------------------------------------------hCCCChHHHHHHHHHHHHhC
Confidence 99999999999999987 34567788999999999999
Q ss_pred ChHHHHHHHHHHHHh------cCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHH
Q 001357 540 DTVAASVLYRLILFK------YQDY-VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 612 (1093)
Q Consensus 540 ~~~~A~~~~~~~l~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 612 (1093)
++++|+.+|++++.. +|+. ..++..++.++...|++++|+.++++++..+|.++.++..++.+|...|++++|
T Consensus 490 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999987 5654 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCChHHHHHhHhH
Q 001357 613 KETFRAASDATDGKDSYATLSLGNW 637 (1093)
Q Consensus 613 ~~~~~~~l~~~~~~d~~~~~~l~~~ 637 (1093)
...|++++...|. +..++..++++
T Consensus 570 ~~~~~~~l~~~p~-~~~~~~~l~~~ 593 (597)
T 2xpi_A 570 ITHLHESLAISPN-EIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHT
T ss_pred HHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 9999999998887 66777777766
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.2e-36 Score=349.35 Aligned_cols=383 Identities=22% Similarity=0.279 Sum_probs=273.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Q 001357 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1093)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 212 (1093)
.+|..++..|++++|+..|.+++..+|+++.++..++.+++..|++++|..+++.++..+|.+ ..+++.+|.++...|+
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~-~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLGNVYKERGQ 82 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHCCC
Confidence 457778888888888888888888888888888888888888888888888888888888887 6678888888888888
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292 (1093)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 292 (1093)
+++|+..|++++.++|++..++..+|.++...|+ +++|+..|.+++..+|++..++..++.++...|++++|+.++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8888888888888888888888888888888887 8888888888888888777777777777766666666666666
Q ss_pred HHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001357 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372 (1093)
Q Consensus 293 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 372 (1093)
+++... |....++..+|.++...|++++|+..|++++. ..|....++..+|.++...|++++|+..|.+++..+
T Consensus 160 ~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 160 KAIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666543 45556666677777777777777777777666 345566667777777777777777777777777777
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 001357 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVL 451 (1093)
Q Consensus 373 p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 451 (1093)
|+++.++..+|.++...|++++|+..|++++..+|.++.++..++.++ ..|++++|+..|++++...|. .+.++
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~ 308 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-----HADSL 308 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-----CHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----cHHHH
Confidence 777777777777777777777777777777777776666666666666 666666666666666655332 35556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHH
Q 001357 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (1093)
Q Consensus 452 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 531 (1093)
.++|.++...|++++|+.+|++++. ..|....+++.+
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~-------------------------------------------~~p~~~~~~~~l 345 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALE-------------------------------------------VFPEFAAAHSNL 345 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTT-------------------------------------------SCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-------------------------------------------cCCCcHHHHHHH
Confidence 6666666666666666666666655 334455566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC
Q 001357 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 573 (1093)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 573 (1093)
|.++...|++++|+..|++++..+|+++.+++.+|.++...|
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 666666666666666666666666666666666665555444
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.5e-36 Score=345.45 Aligned_cols=383 Identities=16% Similarity=0.224 Sum_probs=363.3
Q ss_pred HHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001357 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168 (1093)
Q Consensus 89 la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 168 (1093)
+|..++..|+.. +|+..|.+++..+|+++.++..+|.+++..|++++|...++.++..+|.++.++..+
T Consensus 5 ~a~~~~~~g~~~-----------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~l 73 (388)
T 1w3b_A 5 LAHREYQAGDFE-----------AAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73 (388)
T ss_dssp HHHHHHHHTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHCCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 456666666655 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHH
Q 001357 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248 (1093)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~ 248 (1093)
|.++...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|.+++..+|++..++..+|.++...|+
T Consensus 74 g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-- 150 (388)
T 1w3b_A 74 GNVYKERGQLQEAIEHYRHALRLKPDF-IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR-- 150 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC--
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC--
Confidence 999999999999999999999999999 77899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 001357 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328 (1093)
Q Consensus 249 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (1093)
+++|+..|.+++..+|.++.++..++.++...|++++|+..+++++... |....++..+|.++...|++++|+..|
T Consensus 151 -~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 151 -LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp -HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999865 677899999999999999999999999
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 329 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1093)
Q Consensus 329 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~ 408 (1093)
.+++. ..|....++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|.
T Consensus 227 ~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 303 (388)
T 1w3b_A 227 LRALS---LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303 (388)
T ss_dssp HHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHh---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 99998 567788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccc
Q 001357 409 DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 487 (1093)
Q Consensus 409 ~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 487 (1093)
++.++..++.++ ..|++++|+..+++++...|. ...+++++|.++...|++++|+.+|++++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~----------- 367 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-----FAAAHSNLASVLQQQGKLQEALMHYKEAIR----------- 367 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-----CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT-----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------
Confidence 999999999999 999999999999999886544 588999999999999999999999999998
Q ss_pred cchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCC
Q 001357 488 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540 (1093)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 540 (1093)
..|....+++++|.++..+|+
T Consensus 368 --------------------------------~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 368 --------------------------------ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp --------------------------------TCTTCHHHHHHHHHHHHHTCC
T ss_pred --------------------------------hCCCCHHHHHhHHHHHHHccC
Confidence 567889999999999988764
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-33 Score=330.59 Aligned_cols=426 Identities=15% Similarity=0.125 Sum_probs=356.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
+..++.+|..++..|+|++|+..|++++..+| ++.+++.+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY-SKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH-HHHHHHHHHHH
Confidence 45788889999999999999999999999988 68889999999999999999999999999999988 67788899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH--------------------------
Q 001357 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF-------------------------- 261 (1093)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al-------------------------- 261 (1093)
..+|++++|+..|.+++..+|.+......+..............+++..+..+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999999999888665443333322222222111222221111110
Q ss_pred --------Hh--------CCCcHHHHHHHHHHHHH---cCChHHHHHHHHHHHh-----c--cCCC----CCchHHHHHH
Q 001357 262 --------EI--------YPYCAMALNYLANHFFF---TGQHFLVEQLTETALA-----V--TNHG----PTKSHSYYNL 311 (1093)
Q Consensus 262 --------~~--------~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~~~~----~~~~~~~~~l 311 (1093)
.. .|.++.++..++..++. .|++++|+.++.+++. . .+.. |....+++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 00 14558888888988887 8999999999999998 4 2222 5567899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001357 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (1093)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (1093)
|.++...|++++|+.+|.+++.. .|. ..+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIEL---FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh---Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999984 455 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 392 IEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470 (1093)
Q Consensus 392 ~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 470 (1093)
+++|+..|.+++...|.+..++..++.++ ..|++++|+..+.+++...+. .+.++..+|.++...|++++|+.+
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-----APEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-----CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-----CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999 999999999999999987554 468899999999999999999999
Q ss_pred HHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHh---cCChHHHHHH
Q 001357 471 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ---IHDTVAASVL 547 (1093)
Q Consensus 471 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~ 547 (1093)
|.+++...+... .......+++.+|.++.. .|++++|+..
T Consensus 395 ~~~a~~~~~~~~-------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 395 YDLAIELENKLD-------------------------------------GIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHHHTSS-------------------------------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHhhhccc-------------------------------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 999988532100 011124589999999999 9999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhh
Q 001357 548 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 601 (1093)
Q Consensus 548 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 601 (1093)
|++++..+|+++.++..+|.++...|++++|..+|++++.++|.++.++..+..
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988876643
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=9.4e-33 Score=331.90 Aligned_cols=461 Identities=13% Similarity=0.123 Sum_probs=274.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
+..|+.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++ ..+++.+|.++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH-SKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch-HHHHHHHHHHH
Confidence 35566666666666666666666666666666666666666666666666666666666666666666 55566666666
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHH
Q 001357 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1093)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1093)
..+|++++|+..|+ ++..+|+....+.. .+...+. ...|+..+..++...|...
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~---~~~~~~~---~~~a~~~~~~~l~~~~~~~------------------- 157 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIE---PMLERNL---NKQAMKVLNENLSKDEGRG------------------- 157 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC--------------CHHHHHH---HHHHHHHHHHHCC-------------------------
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHH---HHHHHHH---HHHHHHHHHHHHHhCcccc-------------------
Confidence 66666666666664 55555554443321 1112222 3344444444444333221
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367 (1093)
Q Consensus 288 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 367 (1093)
............+....+...++..+..
T Consensus 158 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 158 ----------------------------------------------------SQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp -----------------------------------------------------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred ----------------------------------------------------ccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 0000011111223333333333333333
Q ss_pred HHHhCCCcHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001357 368 VLEIYPDNCETLKALGHIY--------VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 439 (1093)
Q Consensus 368 ~l~~~p~~~~~~~~la~~~--------~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~ 439 (1093)
.....+........++.++ ...|++++|+..|++++..+|++..++..++.
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~--------------------- 244 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL--------------------- 244 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH---------------------
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHH---------------------
Confidence 3333333222222222222 22346667777777777777766555443322
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcC
Q 001357 440 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 519 (1093)
Q Consensus 440 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 519 (1093)
++..+|.++...|++++|+.+|.+++..
T Consensus 245 ----------~~~~~g~~~~~~~~~~~A~~~~~~~~~~------------------------------------------ 272 (537)
T 3fp2_A 245 ----------ALCYTGIFHFLKNNLLDAQVLLQESINL------------------------------------------ 272 (537)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------------------
T ss_pred ----------HHHHHHHHHHhcccHHHHHHHHHHHHhc------------------------------------------
Confidence 2334455566666666666666666552
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHh
Q 001357 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599 (1093)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 599 (1093)
.|. ..+++.+|.++...|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++..+|.++.
T Consensus 273 -~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----- 345 (537)
T 3fp2_A 273 -HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY----- 345 (537)
T ss_dssp -CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSH-----
T ss_pred -CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-----
Confidence 233 4555555666555566666666555555555555555555555555555555555555555555554443
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHH
Q 001357 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679 (1093)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~ 679 (1093)
++..+|.+ |... |++++|+.+|.+++..+|+++.++.
T Consensus 346 ------------------------------~~~~la~~-~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~ 382 (537)
T 3fp2_A 346 ------------------------------PYIQLACL-LYKQ------------GKFTESEAFFNETKLKFPTLPEVPT 382 (537)
T ss_dssp ------------------------------HHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred ------------------------------HHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCChHHHH
Confidence 44455555 6655 6777777777777777888888888
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHHHHh----------cCHHHHHHHHHHHHHhhcCCC
Q 001357 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQ----------GNFALAMKMYQNCLRKFYYNT 748 (1093)
Q Consensus 680 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~ 748 (1093)
.+|.++...|++++|+.+|+++++..|..... .....++.+|.+|... |++++|+..|++++.. .+.
T Consensus 383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~ 460 (537)
T 3fp2_A 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPR 460 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCC
Confidence 88899999999999999999999888753222 2234467788999999 9999999999999998 667
Q ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHH
Q 001357 749 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792 (1093)
Q Consensus 749 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~ 792 (1093)
++.++..+|.+|...|++++|..+|++++.+.|+++...-.+..
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 504 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHhH
Confidence 78999999999999999999999999999999998766544433
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.9e-32 Score=329.29 Aligned_cols=454 Identities=16% Similarity=0.131 Sum_probs=354.5
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001357 79 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158 (1093)
Q Consensus 79 ~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 158 (1093)
.......+..+|..|+..|+.. +|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++..+
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 89 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFN-----------EAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC------------CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhccHH-----------HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3456778899999999999888 99999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH---H
Q 001357 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL---V 235 (1093)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~---~ 235 (1093)
|+++.+++.+|.++...|++++|+..|+ ++...|+.... + ...+...+....|+..|.+++...|...... .
T Consensus 90 p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~-~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 90 PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA-S---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH-H---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence 9999999999999999999999999996 88888877322 2 2345555667889999999988755432111 1
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--------HcCChHHHHHHHHHHHhccCCCCC----
Q 001357 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF--------FTGQHFLVEQLTETALAVTNHGPT---- 303 (1093)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~---- 303 (1093)
.....+....+ ...++..+......++........++.++. ..|++++|+.+++.++...+..+.
T Consensus 165 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~ 241 (537)
T 3fp2_A 165 TSLASFFGIFD---SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN 241 (537)
T ss_dssp HHHHHHHHTSC---HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHH
T ss_pred hHHHHHHHhcC---hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHH
Confidence 11111222222 334444444333344443334443333322 224666677777766654433221
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001357 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (1093)
Q Consensus 304 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (1093)
.+.+++.+|.++...|++++|+.+|.+++.. .|. ..+++.+|.++...|++++|+.+|.+++..+|.++.++..+|
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 317 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL---HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 1356888899999999999999999999984 455 788999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 001357 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 462 (1093)
Q Consensus 384 ~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g 462 (1093)
.++...|++++|+..|++++..+|.+..++..++.++ ..|++++|+..+.+++...|. .+.++..+|.++...|
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-----LPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CTHHHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999 999999999999999988554 4788999999999999
Q ss_pred CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhc----
Q 001357 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI---- 538 (1093)
Q Consensus 463 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~---- 538 (1093)
++++|+.+|++++...+... ........++.+|.++...
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~-------------------------------------~~~~~~~~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQE-------------------------------------KIHVGIGPLIGKATILARQSSQD 435 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCS-------------------------------------SCSSTTHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHcCCcch-------------------------------------hhHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999998543110 1112344567788888888
Q ss_pred ------CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHH
Q 001357 539 ------HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (1093)
Q Consensus 539 ------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 597 (1093)
|++++|+..|++++..+|++..++..+|.++...|++++|+.+|++++.+.|..+....
T Consensus 436 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred chhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887644
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-31 Score=317.80 Aligned_cols=420 Identities=17% Similarity=0.171 Sum_probs=363.0
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1093)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1093)
+....+..+|..|+..|+.. +|+..|++++..+| ++.+++.+|.+++..|++++|+..|++++..+|+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 71 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYD-----------DAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD 71 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC
T ss_pred hhHHHHHHHHHHHHHhccHH-----------HHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH
Confidence 46678888999999988877 99999999999999 6999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHH---HHH--------------
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF---QRA-------------- 223 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~---~~a-------------- 223 (1093)
++.+++.+|.++...|++++|+..|++++...|.+.......+..+ ........+...+ ..+
T Consensus 72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 150 (514)
T 2gw1_A 72 YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN-LNKQAMSKLKEKFGDIDTATATPTELSTQPAKE 150 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHH-HHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH
Confidence 9999999999999999999999999999999987743322222222 1111111111111 000
Q ss_pred --------------------Hhh--------CCCcHHHHHHHHHHHHH---hhhHHhHHHHHHHHHHHHH-----h--C-
Q 001357 224 --------------------LQL--------DPENVEALVALAVMDLQ---ANEAAGIRKGMEKMQRAFE-----I--Y- 264 (1093)
Q Consensus 224 --------------------l~~--------~p~~~~a~~~la~~~~~---~~~~~~~~~Al~~~~~al~-----~--~- 264 (1093)
+.. .|.+..+++.++.+++. .|+ +.+|+..|.+++. + +
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~ 227 (514)
T 2gw1_A 151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPES---YDKADESFTKAARLFEEQLDKNN 227 (514)
T ss_dssp ------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTH---HHHHHHHHHHHHHHHHHHTTTST
T ss_pred HHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcc---HHHHHHHHHHHHHHhhhhhccCc
Confidence 000 15558888999988887 666 9999999999999 5 3
Q ss_pred ------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 001357 265 ------PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338 (1093)
Q Consensus 265 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 338 (1093)
|.++.++..+|.++...|++++|+.++.+++... |. ..+++.+|.++...|++++|+.+|.+++. ..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~ 300 (514)
T 2gw1_A 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF---PR-VNSYIYMALIMADRNDSTEYYNYFDKALK---LD 300 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC---CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHT---TC
T ss_pred cccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhh---cC
Confidence 5667899999999999999999999999999875 44 89999999999999999999999999997 56
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001357 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1093)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~ 418 (1093)
|....++..+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+.+|.+++...|.++.++..+|.
T Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 380 (514)
T 2gw1_A 301 SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAE 380 (514)
T ss_dssp TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHH
Confidence 77788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcchhhhhcccccchhhh
Q 001357 419 LL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFE---KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 493 (1093)
Q Consensus 419 ~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 493 (1093)
++ ..|++++|+..+.+++...+...... ...++..+|.++.. .|++++|+.+|++++.
T Consensus 381 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~----------------- 443 (514)
T 2gw1_A 381 ILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK----------------- 443 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-----------------
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH-----------------
Confidence 99 99999999999999999887643211 14589999999999 9999999999999998
Q ss_pred hhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHH
Q 001357 494 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 566 (1093)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 566 (1093)
..|....+++.+|.++...|++++|...|++++..+|++..++..+.
T Consensus 444 --------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 444 --------------------------LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp --------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred --------------------------hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 45678889999999999999999999999999999999988877664
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=3.1e-30 Score=302.34 Aligned_cols=379 Identities=19% Similarity=0.166 Sum_probs=304.5
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
.+...+..++..+|.++..++.+|..++..|++++|+.+|++++..+|.++.+++.+|.+++..|++++|+..|++++..
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 56677777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
+|.+ ..+++.+|.++..+|++++|+..|++++..+|++. .++..++.++..
T Consensus 90 ~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------- 143 (450)
T 2y4t_A 90 KMDF-TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM------------------------- 143 (450)
T ss_dssp CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------------
T ss_pred CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------------
Confidence 8887 67788888888888888888888888888888776 555555544222
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHH
Q 001357 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1093)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1093)
..++.+|.++...|++++|+.+|.+++. ..|....+++.+
T Consensus 144 -------------------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l 183 (450)
T 2y4t_A 144 -------------------------------------QRLRSQALNAFGSGDYTAAIAFLDKILE---VCVWDAELRELR 183 (450)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHH
Confidence 2344566677778888888888888887 456777889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHH
Q 001357 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428 (1093)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A 428 (1093)
|.++...|++++|+.+|++++..+|.++.++..+|.+|...|++++|+..|++++...|++...+..+..+.
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~-------- 255 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK-------- 255 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999988776654432
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhh
Q 001357 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 508 (1093)
Q Consensus 429 ~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1093)
....+..+|.++...|++++|+.+|++++...
T Consensus 256 ------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~------------------------------ 287 (450)
T 2y4t_A 256 ------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE------------------------------ 287 (450)
T ss_dssp ------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------------------
T ss_pred ------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------------------
Confidence 02334567888999999999999999998842
Q ss_pred hhhccCCCCcCCCCch----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 509 HRFENDGNHVELPWNK----VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584 (1093)
Q Consensus 509 ~~l~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 584 (1093)
|.+ ..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+.+|++
T Consensus 288 -------------p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 288 -------------PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp -------------CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 223 457888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChhHHHHhh------------hhhhccc-----chHHHHHHHHH-hhhcCCC
Q 001357 585 ALKVNGKYPNALSMLG------------DLELKND-----DWVKAKETFRA-ASDATDG 625 (1093)
Q Consensus 585 al~~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~-~l~~~~~ 625 (1093)
++.++|+++.++..++ .+|...| ...++...|.+ ++...|+
T Consensus 355 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 355 AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999998 4455555 45666777775 5555554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.98 E-value=5.2e-30 Score=300.41 Aligned_cols=395 Identities=17% Similarity=0.183 Sum_probs=306.5
Q ss_pred CCChhHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhh
Q 001357 23 PRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK 102 (1093)
Q Consensus 23 p~~~~~~~~~l~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~ 102 (1093)
|.....+.+++...+.+...|+.+|..|++.|++++|+.+|++++...+. ...++..+|.+|..+|+..
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~l~~~~~~~g~~~-- 77 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---------NYIAYYRRATVFLAMGKSK-- 77 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHH--
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---------cHHHHHHHHHHHHHCCCHH--
Confidence 33455666777778888889999999999999999999999988754332 2567888898998888776
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH-----------
Q 001357 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQ----------- 168 (1093)
Q Consensus 103 ~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~l----------- 168 (1093)
+|+..|.+++..+|.++.+++.+|.+|...|++++|+..|++++..+|++. .++..+
T Consensus 78 ---------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 148 (450)
T 2y4t_A 78 ---------AALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS 148 (450)
T ss_dssp ---------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999887 766555
Q ss_pred -HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhH
Q 001357 169 -ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (1093)
Q Consensus 169 -a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 247 (1093)
|.++...|++++|+.+|++++...|.+ ..+++.+|.+|...|++++|+..|.+++..+|.++.++..+|.++...|+
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 226 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVCVWD-AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD- 226 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Confidence 666888899999999999998888888 67788889999999999999999999988888888888899988888888
Q ss_pred HhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 001357 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1093)
Q Consensus 248 ~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1093)
+++|+..|.+++..+|.+..++..+..+. ....+..+|.++...|++++|+.+
T Consensus 227 --~~~A~~~~~~~~~~~p~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~g~~~~A~~~ 279 (450)
T 2y4t_A 227 --HELSLSEVRECLKLDQDHKRCFAHYKQVK-------------------------KLNKLIESAEELIRDGRYTDATSK 279 (450)
T ss_dssp --HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCChHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88899999998888888887766553321 113455678888999999999999
Q ss_pred HHHHHHhcCCCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001357 328 YMASVKEINKPHEF-IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1093)
Q Consensus 328 ~~~al~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 406 (1093)
|.+++...+..+.. ..++..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++.++
T Consensus 280 ~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 280 YESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 99998743221111 34678889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH------------H-hcC-----CHHHHHHHHHH-HHHHHHhcCCCCC-----HHHHHHHHHHHHHcC
Q 001357 407 PRDAQAFIDLGEL------------L-ISS-----DTGAALDAFKT-ARTLLKKAGEEVP-----IEVLNNIGVIHFEKG 462 (1093)
Q Consensus 407 p~~~~~~~~la~~------------~-~~~-----~~~~A~~~~~~-a~~~~~~~~~~~~-----~~~~~~la~~~~~~g 462 (1093)
|++..++..++.+ | ..| ...++...|.+ ++...|+...... ...+..++.+|-.++
T Consensus 360 p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~ 439 (450)
T 2y4t_A 360 ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLS 439 (450)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhC
Confidence 9999999888844 3 334 45666777776 6666555432211 235555666666666
Q ss_pred CHHH
Q 001357 463 EFES 466 (1093)
Q Consensus 463 ~~~~ 466 (1093)
+.++
T Consensus 440 d~~~ 443 (450)
T 2y4t_A 440 DPEM 443 (450)
T ss_dssp GGGG
T ss_pred CHHH
Confidence 6544
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=5e-28 Score=273.70 Aligned_cols=349 Identities=19% Similarity=0.182 Sum_probs=272.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
+..++.+|.+++..|++++|+.+|++++..+|+++.+++.+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF-TAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 45666666777777777777777777766666666666666666666666666666666666666666 45566666666
Q ss_pred HHcCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 001357 208 YKLGQLGKARQAFQRALQLDP---ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1093)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1093)
...|++++|+..|++++..+| ++..++..++.++.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------------------------ 119 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------------------------ 119 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------------------------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------------------------
Confidence 666666666666666666666 55554444443211
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHH
Q 001357 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364 (1093)
Q Consensus 285 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 364 (1093)
...+..+|.++...|++++|+.+|.+++. ..|....++..+|.++...|++++|+..
T Consensus 120 --------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 176 (359)
T 3ieg_A 120 --------------------MQRLRSQALDAFDGADYTAAITFLDKILE---VCVWDAELRELRAECFIKEGEPRKAISD 176 (359)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 12355677888889999999999999987 4567778899999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Q 001357 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGE 444 (1093)
Q Consensus 365 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~ 444 (1093)
|.+++...|.++.++..+|.++...|++++|+..|++++...|++..++..+..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------------------------ 232 (359)
T 3ieg_A 177 LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK------------------------ 232 (359)
T ss_dssp HHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999887665443322
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCch
Q 001357 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (1093)
Q Consensus 445 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 524 (1093)
.......+|.++...|++++|+..|++++...+. .....
T Consensus 233 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------------------------------------~~~~~ 271 (359)
T 3ieg_A 233 --KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS---------------------------------------VAEYT 271 (359)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---------------------------------------SHHHH
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------------------------------------chHHH
Confidence 1334556788999999999999999999884320 00012
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhh
Q 001357 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (1093)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 604 (1093)
..++..+|.++...|++++|+..|.+++..+|+++.++..+|.++...|++++|+.+|++++.++|+++.++..++.++.
T Consensus 272 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 272 VRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 24577899999999999999999999999999999999999999999999999999999999999999999998888866
Q ss_pred ccc
Q 001357 605 KND 607 (1093)
Q Consensus 605 ~~g 607 (1093)
..+
T Consensus 352 ~~~ 354 (359)
T 3ieg_A 352 LLK 354 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=6.7e-28 Score=272.67 Aligned_cols=320 Identities=17% Similarity=0.175 Sum_probs=286.1
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
+..+..+|..|...|+.. +|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++..+|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~-----------~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 71 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLA-----------DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT 71 (359)
T ss_dssp HHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc
Confidence 457788999999988877 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CChHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhC
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHP---SCPGAIRLGI------------GLCRYKLGQLGKARQAFQRALQLD 227 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p---~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~ 227 (1093)
.++..+|.++...|++++|+..|++++...| .+ ..++..+ |.++...|++++|+..|.+++..+
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999 66 5555555 799999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHH
Q 001357 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1093)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 307 (1093)
|.++.++..+|.++...|+ +++|+..+.+++..+|.++.++..+|.++...|++++|...+..++...+. ...+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~ 224 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGE---PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD---HKRC 224 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred CCchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---chHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999977643 3333
Q ss_pred H------------HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 308 Y------------YNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374 (1093)
Q Consensus 308 ~------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 374 (1093)
+ ..+|.++...|++++|+..|.+++...+..+.. ..++..+|.++...|++++|+.+|++++..+|+
T Consensus 225 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (359)
T 3ieg_A 225 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD 304 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3 244888999999999999999998854322111 134667899999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001357 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1093)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~ 420 (1093)
++.++..+|.++...|++++|+..|++++.++|++..++..++.+.
T Consensus 305 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 305 NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888888776
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.5e-28 Score=289.93 Aligned_cols=393 Identities=17% Similarity=0.122 Sum_probs=251.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEA---------DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS--- 194 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~--- 194 (1093)
....+..+|.++...|++++|+..|++++.+ +|....+|..+|.+|+.+|++++|+.+|++++.+.+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3566778999999999999999999999876 5777889999999999999999999999999987421
Q ss_pred ----ChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 195 ----CPGAIRLGIGLCRYKLG--QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 195 ----~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
..+.++..+|.++...| ++++|+.+|++++.++|+++.++..++.++...++.+...+|+..|++++.++|.++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 12567778887777654 699999999999999999999999999998877665557889999999999999998
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHH
Q 001357 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1093)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1093)
.++..++..+...+ ...|++++|+.+|++++. ..|....++..+
T Consensus 210 ~~~~~l~~~~~~~~---------------------------------~~~~~~~~a~~~~~~al~---~~~~~~~~~~~l 253 (472)
T 4g1t_A 210 YLKVLLALKLHKMR---------------------------------EEGEEEGEGEKLVEEALE---KAPGVTDVLRSA 253 (472)
T ss_dssp HHHHHHHHHHHHCC---------------------------------------CHHHHHHHHHHH---HCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------------------------hhhhHHHHHHHHHHHHHH---hCccHHHHHHHH
Confidence 87776665544332 223455666666666665 445666667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHH
Q 001357 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGA 427 (1093)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~ 427 (1093)
|.+|...|++++|+..|.++++.+|+++.++..+|.+|...+....+... ...+... ..+.++.
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~ 318 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE---------------NGMYGKRKLLELIGH 318 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHH
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHH---------------HHHHHHHHHHhhHHH
Confidence 77777777777777777777777777777777777776543211111000 0011111 1223455
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001357 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (1093)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1093)
|+..+.+++.+.|. ...++..+|.++...|++++|+.+|++++...+
T Consensus 319 A~~~~~~a~~~~~~-----~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~---------------------------- 365 (472)
T 4g1t_A 319 AVAHLKKADEANDN-----LFRVCSILASLHALADQYEEAEYYFQKEFSKEL---------------------------- 365 (472)
T ss_dssp HHHHHHHHHHHCTT-----TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC----------------------------
T ss_pred HHHHHHHHhhcCCc-----hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC----------------------------
Confidence 55566655555333 234455666666666666666666666665321
Q ss_pred hhhhccCCCCcCCCCchHHHHHHHHHH-HHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 508 FHRFENDGNHVELPWNKVTVLFNLARL-LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586 (1093)
Q Consensus 508 ~~~l~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 586 (1093)
.+.....+++.++.+ +...|++++|+..|.+++.+.|.+...... ...+..++.+++
T Consensus 366 ------------~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----------~~~l~~~~~~~l 423 (472)
T 4g1t_A 366 ------------TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----------KDKLQKIAKMRL 423 (472)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHHHHHHH
T ss_pred ------------CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHHH
Confidence 000112234444433 345666667777777777666665432211 223344566666
Q ss_pred HHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001357 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 587 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
..+|.++.++..+|.+|...|++++|+..|+++++..+.
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 677777777777777777777777777777777765544
No 14
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=7e-28 Score=284.24 Aligned_cols=399 Identities=16% Similarity=0.113 Sum_probs=282.0
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhc---------CCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 001357 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI---------DMHEPSTWVGKGQLLLAKGEVEQASSAF 151 (1093)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~---------~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 151 (1093)
.+..+++.||.+|..+|+.+ +|+..|++++.+ +|....+|..+|.+|...|++++|+.+|
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~-----------eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~ 117 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNE-----------AALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34678899999999999877 788888888765 6777788999999999999999999999
Q ss_pred HHHHHhC--------CCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH---cCCHHHHHH
Q 001357 152 KIVLEAD--------RDNVPALLGQACVEFNR--GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK---LGQLGKARQ 218 (1093)
Q Consensus 152 ~~al~~~--------p~~~~a~~~la~~~~~~--g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~---~g~~~~A~~ 218 (1093)
++++.+. +..+.++..+|.++... ++|++|+.+|++++..+|++ +.++..+|.++.. .++.++|+.
T Consensus 118 ~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-~~~~~~~~~~~~~l~~~~~~~~al~ 196 (472)
T 4g1t_A 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-PEFTSGLAIASYRLDNWPPSQNAID 196 (472)
T ss_dssp HHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHSCCCCCTHH
T ss_pred HHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCchHHHHHHH
Confidence 9998763 34577888887776654 57999999999999999999 7778888887654 577789999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhhh-HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 001357 219 AFQRALQLDPENVEALVALAVMDLQANE-AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297 (1093)
Q Consensus 219 ~~~~al~~~p~~~~a~~~la~~~~~~~~-~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 297 (1093)
.|++++.++|++..++..++..+...+. .+.+.+|+..+++++..+|.++.++..+|.+|...|++++|+..+.+++..
T Consensus 197 ~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 197 PLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 9999999999999999999887766543 234889999999999999999999999999999999999999999999876
Q ss_pred cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001357 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377 (1093)
Q Consensus 298 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 377 (1093)
. |..+.+++.+|.+|...+....+.. ....+......+.++.|+..|++++..+|.+..
T Consensus 277 ~---p~~~~~~~~lg~~y~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 335 (472)
T 4g1t_A 277 I---PNNAYLHCQIGCCYRAKVFQVMNLR------------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFR 335 (472)
T ss_dssp S---TTCHHHHHHHHHHHHHHHHHHHHC------------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCC
T ss_pred C---CChHHHHHHHHHHHHHHHHHhhhHH------------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhh
Confidence 5 6677888888888764322211111 111222223344567888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH-
Q 001357 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV- 456 (1093)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~- 456 (1093)
++..+|.+|...|++++|+.+|++++...|++.... .+++.+|.
T Consensus 336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~-----------------------------------~~~~~~~~~ 380 (472)
T 4g1t_A 336 VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ-----------------------------------LLHLRYGNF 380 (472)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH-----------------------------------HHHHHHHHH
T ss_pred hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH-----------------------------------HHHHHHHHH
Confidence 888888888888888888888888888776543211 11222232
Q ss_pred HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHH
Q 001357 457 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 536 (1093)
Q Consensus 457 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 536 (1093)
.+...|++++|+..|.+++.+. |......
T Consensus 381 ~~~~~~~~~~Ai~~y~kal~i~-------------------------------------------~~~~~~~-------- 409 (472)
T 4g1t_A 381 QLYQMKCEDKAIHHFIEGVKIN-------------------------------------------QKSREKE-------- 409 (472)
T ss_dssp HHHTSSCHHHHHHHHHHHHHSC-------------------------------------------CCCHHHH--------
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-------------------------------------------cccHHHH--------
Confidence 2345677777777777777632 2222111
Q ss_pred hcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhh
Q 001357 537 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (1093)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 600 (1093)
+....+..++.+++..+|.++.++..+|.++...|++++|+.+|+++++++|.+|.+...+|
T Consensus 410 --~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 410 --KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp --HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred --HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 11233455677778888888888888888888888888888888888888888888877766
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.5e-26 Score=258.32 Aligned_cols=302 Identities=17% Similarity=0.224 Sum_probs=276.5
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Q 001357 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1093)
Q Consensus 118 ~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1093)
...+...|.++..++.+|..++..|++++|+.+|++++..+|.+..++..++.+++..|++++|+.++.+++..+|.+ +
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 90 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN-P 90 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-T
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-H
Confidence 345556688899999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001357 198 AIRLGIGLCRYKLG-QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1093)
Q Consensus 198 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1093)
.+++.+|.++...| ++++|+..|.+++..+|.+..++..+|.++...|+ +.+|+..|.+++...|.+..++..++.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE---HDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 78999999999999 99999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC------CCCchhhHHHHHH
Q 001357 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK------PHEFIFPYYGLGQ 350 (1093)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~la~ 350 (1093)
++...|++++|+.++.+++... |..+.+++.+|.++...|++++|+.+|.+++...+. .+....++..+|.
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA---PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 9999999999999999999654 667899999999999999999999999999985421 1555678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCHH
Q 001357 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTG 426 (1093)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~--~~~~~~ 426 (1093)
++...|++++|+.+|++++...|.++.++..+|.++...|++++|+.+|++++.++|+++.++..++.++ ..|+.+
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 555543
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=7.5e-24 Score=250.43 Aligned_cols=378 Identities=16% Similarity=0.124 Sum_probs=270.8
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHH
Q 001357 113 ATQYYNKASRIDMHEPSTWVGKGQLLLA----KGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEF 184 (1093)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al~~ 184 (1093)
++..+.++.. +.++.+++.+|.+|+. .+++++|+..|++++.. .++.+++.+|.+|.. .+++++|+.+
T Consensus 26 ~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 4555555543 6788999999999998 89999999999999876 578999999999999 8999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hhhHHhHHHHHHH
Q 001357 185 YKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ----ANEAAGIRKGMEK 256 (1093)
Q Consensus 185 ~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~~~~~~~~~Al~~ 256 (1093)
|+++.... + +..++.+|.+|.. .+++++|+..|+++... +++.+++.||.+|.. .++ +.+|+..
T Consensus 102 ~~~a~~~~--~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~ 173 (490)
T 2xm6_A 102 YKKAALKG--L-PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRD---YVMAREW 173 (490)
T ss_dssp HHHHHHTT--C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC---HHHHHHH
T ss_pred HHHHHHCC--C-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC---HHHHHHH
Confidence 99998753 4 5678889999998 88999999999998764 578889999988887 555 8888888
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHh----cCCHHHHHHHH
Q 001357 257 MQRAFEIYPYCAMALNYLANHFFF----TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS----KGDYEKAGLYY 328 (1093)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~ 328 (1093)
|+++... .++.+++.++.+|.. .+++++|+.++.++... ..+.+++.+|.+|.. .+++++|+.+|
T Consensus 174 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 174 YSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 8888775 467777777777777 77777777777777653 235677777777775 67777777777
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----CCHHHHHHHH
Q 001357 329 MASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL-----GQIEKAQELL 399 (1093)
Q Consensus 329 ~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~l 399 (1093)
.++.. .....+++.+|.++.. .+++++|+.+|+++... .++.+++.+|.+|... +++++|+.+|
T Consensus 247 ~~a~~-----~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 247 SQSAE-----QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHT-----TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHH-----CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 77764 2345566777777776 67777777777776653 4566777777777766 6777777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHH-hcC---CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 001357 400 RKAAKIDPRDAQAFIDLGELL-ISS---DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSF 471 (1093)
Q Consensus 400 ~~~l~~~p~~~~~~~~la~~~-~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~ 471 (1093)
++++.. .++.+++.++.++ ..| ++++|+.+|+++... ..+..++++|.+|.. .+++++|+.+|
T Consensus 320 ~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 320 TKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-------GEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 776654 3456666677666 433 566666666666553 135666666666666 66666666666
Q ss_pred HHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHh----cCChHHHHHH
Q 001357 472 KDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVL 547 (1093)
Q Consensus 472 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 547 (1093)
+++... ..+.+++++|.+|.. .+++++|..+
T Consensus 391 ~~A~~~---------------------------------------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 391 RKAAEQ---------------------------------------------GLSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHT---------------------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHhC---------------------------------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 666552 134566666666665 5666666666
Q ss_pred HHHHHHhcCC---hHHHHHHHHHHHH
Q 001357 548 YRLILFKYQD---YVDAYLRLAAIAK 570 (1093)
Q Consensus 548 ~~~~l~~~p~---~~~~~~~la~~~~ 570 (1093)
|++++...|+ ++.+...++.++.
T Consensus 426 ~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 426 FDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 6666666633 5555555555433
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=2.2e-23 Score=246.45 Aligned_cols=394 Identities=17% Similarity=0.137 Sum_probs=343.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH----cCCHHHHHH
Q 001357 147 ASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQ 218 (1093)
Q Consensus 147 A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~ 218 (1093)
++..+.++.. +.++.+++.+|.++.. .+++++|+.+|++++.. .+ +.+++.+|.+|.. .+++++|+.
T Consensus 26 ~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~-~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 26 NLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GY-TPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 4555665544 6789999999999999 89999999999999986 34 6788999999999 999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHH----hhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCChHHHHHH
Q 001357 219 AFQRALQLDPENVEALVALAVMDLQ----ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF----TGQHFLVEQL 290 (1093)
Q Consensus 219 ~~~~al~~~p~~~~a~~~la~~~~~----~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 290 (1093)
+|+++... .++.+++.||.++.. .++ +.+|+..|+++... .++.+++.||.+|.. .+++++|+.+
T Consensus 101 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~---~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 101 WYKKAALK--GLPQAQQNLGVMYHEGNGVKVD---KAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99999875 688999999999988 666 99999999999875 578999999999998 8999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH----cCCHHHHH
Q 001357 291 TETALAVTNHGPTKSHSYYNLARSYHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSAL 362 (1093)
Q Consensus 291 ~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 362 (1093)
++++... .++.+++.+|.+|.. .+++++|+.+|.++.. .....+++.+|.+|.. .+++++|+
T Consensus 174 ~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 174 YSKAAEQ-----GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-----SGDELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHC-----CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 9999874 357899999999998 8999999999999987 2456889999999997 89999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hc-----CCHHHHHHHH
Q 001357 363 TNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-IS-----SDTGAALDAF 432 (1093)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~-----~~~~~A~~~~ 432 (1093)
.+|++++.. .++.+++.+|.+|.. .+++++|+.+|+++... .++.+++.++.++ .. +++++|+.+|
T Consensus 244 ~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 244 VLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 999999875 578899999999999 89999999999999865 6789999999999 65 7999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhh
Q 001357 433 KTARTLLKKAGEEVPIEVLNNIGVIHFEKG---EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (1093)
Q Consensus 433 ~~a~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1093)
+++... .++..++++|.+|...| ++++|+.+|++++..
T Consensus 320 ~~a~~~-------~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-------------------------------- 360 (490)
T 2xm6_A 320 TKSAEQ-------GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-------------------------------- 360 (490)
T ss_dssp HHHHHT-------TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--------------------------------
T ss_pred HHHHhc-------CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--------------------------------
Confidence 998874 24789999999999877 899999999999873
Q ss_pred hhccCCCCcCCCCchHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----cCCHHHHHHH
Q 001357 510 RFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLSIEL 581 (1093)
Q Consensus 510 ~l~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 581 (1093)
.++.+++++|.+|.. .+++++|+.+|++++.. .++.+++.+|.++.. .+++.+|..+
T Consensus 361 -------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 361 -------------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp -------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 367899999999999 89999999999999875 468999999999998 8999999999
Q ss_pred HHHHHHHcCC---ChhHHHHhhhhhhcccchHHHHHHHHHhhhc
Q 001357 582 VNEALKVNGK---YPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (1093)
Q Consensus 582 ~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 622 (1093)
|++++..+|+ ++.+..+++.++.. +...|.....+.++.
T Consensus 426 ~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~ 467 (490)
T 2xm6_A 426 FDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEK 467 (490)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHH
Confidence 9999999954 88899999988664 344444444444443
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=2.3e-25 Score=248.70 Aligned_cols=293 Identities=15% Similarity=0.137 Sum_probs=272.3
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
..++..++..++..|+.. +|+.+|++++..+|.++.++..++.+++..|++++|+..|.+++..+|.++
T Consensus 22 ~~~~~~~a~~~~~~g~~~-----------~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFK-----------MCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp CTTHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 446777888888888776 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001357 163 PALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1093)
Q Consensus 163 ~a~~~la~~~~~~g-~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1093)
.+++.+|.++...| ++++|+.+|++++..+|.+ ..+++.+|.++...|++++|+..|.+++...|.+..++..+|.++
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY-GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC-THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999999999 9999999999999999998 678999999999999999999999999999999999999999999
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC------CCCchHHHHHHHHHH
Q 001357 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH------GPTKSHSYYNLARSY 315 (1093)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~la~~~ 315 (1093)
...|+ +++|+..|.+++..+|.++.++..++.++...|++++|+..+.+++...+. .+..+.+++.+|.++
T Consensus 170 ~~~~~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 170 GLTNN---SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHTTC---HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHhh---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999976422 145568999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCHH
Q 001357 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY-VQLGQIE 393 (1093)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~ 393 (1093)
...|++++|+.+|.+++. ..|....++..+|.++...|++++|+.+|++++..+|+++.++..++.++ ...|+.+
T Consensus 247 ~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALV---LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhcCHHHHHHHHHHHHh---hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999998 45677889999999999999999999999999999999999999999998 4556543
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.95 E-value=2.8e-24 Score=256.89 Aligned_cols=430 Identities=13% Similarity=0.058 Sum_probs=334.6
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 001357 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196 (1093)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~ 196 (1093)
|++++..+|.+..+|..++.. ...|++++|..+|++++..+|.+..+|..++..+...|++++|..+|++++...| +
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~- 78 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H- 78 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C-
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-
Confidence 678889999999999999984 7899999999999999999999999999999999999999999999999999999 4
Q ss_pred HHHHHHHHH-HHHHcCCHHHHHH----HHHHHHhh---CCCcHHHHHHHHHHHHH---------hhhHHhHHHHHHHHHH
Q 001357 197 GAIRLGIGL-CRYKLGQLGKARQ----AFQRALQL---DPENVEALVALAVMDLQ---------ANEAAGIRKGMEKMQR 259 (1093)
Q Consensus 197 ~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~a~~~la~~~~~---------~~~~~~~~~Al~~~~~ 259 (1093)
..+|+.++. .....|+++.|+. +|++++.. +|.+...|..++.+... .|+ ++.|...|++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~a~~~y~~ 155 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR---ITAVRRVYQR 155 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH---HHHHHHHHHH
Confidence 456777774 4456788877765 88888764 56778888888877665 455 9999999999
Q ss_pred HHHhCCCcH--HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH---Hh
Q 001357 260 AFEIYPYCA--MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KE 334 (1093)
Q Consensus 260 al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~ 334 (1093)
++. .|... ..+...+......|. ...... +....++|..|...|.... ..
T Consensus 156 al~-~P~~~~~~~~~~~~~~e~~~~~-----~~~~~~-------------------l~~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 156 GCV-NPMINIEQLWRDYNKYEEGINI-----HLAKKM-------------------IEDRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp HTT-SCCTTHHHHHHHHHHHHHHHCH-----HHHHHH-------------------HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-chhhhHHHHHHHHHHHHHhhch-----hHHHHH-------------------HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999 56543 222222221111110 000000 0112345667766665521 11
Q ss_pred cCC-----CCCc-------hhhHHHHHHHHHHc----CCH----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------
Q 001357 335 INK-----PHEF-------IFPYYGLGQVQLKL----GDF----RSALTNFEKVLEIYPDNCETLKALGHIYVQ------ 388 (1093)
Q Consensus 335 ~~~-----~~~~-------~~~~~~la~~~~~~----g~~----~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------ 388 (1093)
+.. +|.. ...|.......... ++. ..++..|++++..+|.++.+|+.+|.++..
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhh
Confidence 111 2221 12333333222221 232 478899999999999999999999999986
Q ss_pred -cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001357 389 -LGQIE-------KAQELLRKAAK-IDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 458 (1093)
Q Consensus 389 -~g~~~-------~A~~~l~~~l~-~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~ 458 (1093)
.|+++ +|+.+|++++. ..|++..+|+.++.++ ..|++++|...|++++.+.|.. ...++..++.++
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~ 366 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID----PTLVYIQYMKFA 366 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC----HHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccC----chHHHHHHHHHH
Confidence 79987 99999999997 7999999999999999 9999999999999999864321 136899999999
Q ss_pred HHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHH-HHh
Q 001357 459 FEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL-LEQ 537 (1093)
Q Consensus 459 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~-~~~ 537 (1093)
...|+++.|+.+|.+++.. .|....++...+.+ +..
T Consensus 367 ~~~~~~~~A~~~~~~Al~~-------------------------------------------~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 367 RRAEGIKSGRMIFKKARED-------------------------------------------ARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------------------------------------------TTCCTHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc-------------------------------------------cCCchHHHHHHHHHHHHH
Confidence 9999999999999999984 33344555555544 446
Q ss_pred cCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh----HHHHhhhhhhcccchHHHH
Q 001357 538 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN----ALSMLGDLELKNDDWVKAK 613 (1093)
Q Consensus 538 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~ 613 (1093)
.|++++|..+|+++++.+|+++.+|..++.++...|++++|..+|++++...|.++. +|..++.+....|+.+.+.
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999999999999999999999999999999999999999877665 8888888889999999999
Q ss_pred HHHHHhhhcCC
Q 001357 614 ETFRAASDATD 624 (1093)
Q Consensus 614 ~~~~~~l~~~~ 624 (1093)
.++.++++..|
T Consensus 484 ~~~~r~~~~~p 494 (530)
T 2ooe_A 484 KVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHTH
T ss_pred HHHHHHHHHCc
Confidence 99999998776
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=1.3e-25 Score=255.08 Aligned_cols=288 Identities=15% Similarity=0.178 Sum_probs=192.5
Q ss_pred HHHHHHH-HHHHHHhcCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001357 109 HFILATQ-YYNKASRIDMHEP----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1093)
Q Consensus 109 ~~~~A~~-~~~~a~~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1093)
+|.+|+. .|++++...|.++ ..++.+|.+++..|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.
T Consensus 40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 119 (368)
T 1fch_A 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 119 (368)
T ss_dssp ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 3458999 9999999888774 5689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH----------------HHHHHHhhhH
Q 001357 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL----------------AVMDLQANEA 247 (1093)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l----------------a~~~~~~~~~ 247 (1093)
.|++++..+|.+ ..++..+|.++...|++++|+..|.+++..+|.+...+..+ +.++ ..|+
T Consensus 120 ~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 196 (368)
T 1fch_A 120 ALRRCLELKPDN-QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSL- 196 (368)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHH-
T ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hccc-
Confidence 999999999998 77899999999999999999999999999999887665433 2222 2222
Q ss_pred HhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 001357 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1093)
Q Consensus 248 ~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1093)
+.+|+..|.+++..+|.. + .+.+++.+|.++...|++++|+.+
T Consensus 197 --~~~A~~~~~~a~~~~p~~----------------------------------~-~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 197 --FLEVKELFLAAVRLDPTS----------------------------------I-DPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp --HHHHHHHHHHHHHHSTTS----------------------------------C-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCcCc----------------------------------c-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444443333330 0 234444455555555555555555
Q ss_pred HHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407 (1093)
Q Consensus 328 ~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p 407 (1093)
|.+++. ..|....+++.+|.++...|++++|+.+|++++..+|.++.++..+|.+|...|++++|+.+|++++.+.|
T Consensus 240 ~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 240 FTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 555554 23444455555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CC-----------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001357 408 RD-----------AQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (1093)
Q Consensus 408 ~~-----------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 439 (1093)
++ ..+|..++.++ ..|+++.|..++.+++..+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence 44 45555555555 5555555555555444443
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=3.7e-23 Score=247.11 Aligned_cols=224 Identities=8% Similarity=0.044 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-HcCCChhHHHHhhhhhhcc
Q 001357 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKA-------RNNLQ-------LSIELVNEALK-VNGKYPNALSMLGDLELKN 606 (1093)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~ 606 (1093)
..++..|++++..+|.++.+|+.++.++.. .|+++ +|+.+|++++. ..|++..+|..++.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 478899999999999999999999999886 79987 99999999997 8999999999999999999
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH-H
Q 001357 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV-L 685 (1093)
Q Consensus 607 g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~-~ 685 (1093)
|++++|...|++++...|.....+++.++.+ +... |++++|+.+|.++++..|.+...+...+.+ +
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~------------~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKAREDARTRHHVYVTAALMEY 401 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHH-HHHh------------cCHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 9999999999999998776323577778877 6666 999999999999999999887777766665 3
Q ss_pred HhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHhh
Q 001357 686 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEA 763 (1093)
Q Consensus 686 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~~la~~~~~~ 763 (1093)
...|++++|+.+|+++++..| +++.+|.++|.++...|++++|..+|++++...+.++. ..+|...+......
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p-----~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHcCChhHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 468999999999999999998 78999999999999999999999999999997544432 56888888888889
Q ss_pred ccHHHHHHHHHHHHHhCCCC
Q 001357 764 EQWQDCKKSLLRAIHLAPSN 783 (1093)
Q Consensus 764 g~~~~A~~~~~~al~~~P~~ 783 (1093)
|+.+.+..++.++++..|.+
T Consensus 477 G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 477 GDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp SCHHHHHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHHCchh
Confidence 99999999999999999964
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=5.1e-25 Score=250.22 Aligned_cols=311 Identities=18% Similarity=0.177 Sum_probs=251.9
Q ss_pred HHHHcCCHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC
Q 001357 137 LLLAKGEVEQASS-AFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1093)
Q Consensus 137 ~~~~~g~~~~A~~-~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1093)
++...|+|++|+. .|.+++...|.++ ..++.+|.+++..|++++|+.+|++++..+|.+ ..+++.+|.++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-MEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCc
Confidence 6777888999998 8888888877764 568888999999999999999999999988888 677888899999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1093)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1093)
++++|+..|.+++.++|++..++..+|.++...|+ +.+|+..|.+++..+|.+...+..++....
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESL---QRQACEILRDWLRYTPAYAHLVTPAEEGAG------------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSTTTGGGCC-------------------
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcCcHHHHHHHHHHhh------------
Confidence 99999999999999999999999999999988888 888999999999888887755543322100
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1093)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1093)
.......+..++.++ ..|++++|+.+|.+++.. .|. ...++..+|.++...|++++|+.+|++++
T Consensus 178 ---------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 178 ---------GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL---DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp -----------------CTTHHHH-HHHHHHHHHHHHHHHHHH---STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh---CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 000112333556666 889999999999999984 445 67889999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC----
Q 001357 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE---- 444 (1093)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~---- 444 (1093)
..+|.++.++..+|.++...|++++|+..|++++...|.++.++..+|.++ ..|++++|+.+|++++.+.|....
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999887522
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 445 --EVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1093)
Q Consensus 445 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 476 (1093)
.....++..+|.++...|++++|..++.+++.
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 22378999999999999999999999987765
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=2.7e-24 Score=244.10 Aligned_cols=278 Identities=13% Similarity=0.096 Sum_probs=192.8
Q ss_pred HHHHHHHHhcCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 114 TQYYNKASRIDMHEP----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1093)
Q Consensus 114 ~~~~~~a~~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1093)
...+.......+.++ ..++.+|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345555555555554 4599999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH----------HHHHHHhhhHHhHHHHHHHHHH
Q 001357 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL----------AVMDLQANEAAGIRKGMEKMQR 259 (1093)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l----------a~~~~~~~~~~~~~~Al~~~~~ 259 (1093)
..+|.+ ..+++.+|.++..+|++++|+..|++++.++|++..++..+ +.++...|+ +.+|+..|.+
T Consensus 127 ~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 202 (365)
T 4eqf_A 127 ELQPNN-LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV---LEGVKELYLE 202 (365)
T ss_dssp HHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHH---HHHHHHHHHH
T ss_pred hcCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhh---HHHHHHHHHH
Confidence 999999 78899999999999999999999999999999877666555 777777777 8888888888
Q ss_pred HHHhCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 001357 260 AFEIYPY--CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1093)
Q Consensus 260 al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1093)
++..+|. ++.++..+|.++. ..|++++|+.+|.+++. .
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~-------------------------------------~~g~~~~A~~~~~~al~---~ 242 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFH-------------------------------------LSGEFNRAIDAFNAALT---V 242 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHH-------------------------------------HHTCHHHHHHHHHHHHH---H
T ss_pred HHHhCcCccCHHHHHHHHHHHH-------------------------------------HCCCHHHHHHHHHHHHH---h
Confidence 8888777 5555555555544 44555555555555554 2
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------
Q 001357 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--------- 408 (1093)
Q Consensus 338 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~--------- 408 (1093)
.|....++..+|.++...|++++|+.+|++++..+|+++.++..+|.+|...|++++|+.+|++++.+.|.
T Consensus 243 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 322 (365)
T 4eqf_A 243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccch
Confidence 34444555555555555555555666665555555555556666666666666666666666666555544
Q ss_pred ---CHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001357 409 ---DAQAFIDLGELL-ISSDTGAALDAFKTA 435 (1093)
Q Consensus 409 ---~~~~~~~la~~~-~~~~~~~A~~~~~~a 435 (1093)
+..+|..++.++ ..|+.+.+.....+.
T Consensus 323 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 323 PAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp ----CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 244556666666 566665555554443
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=2.6e-24 Score=244.21 Aligned_cols=294 Identities=19% Similarity=0.192 Sum_probs=241.8
Q ss_pred HHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 149 SAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (1093)
Q Consensus 149 ~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 224 (1093)
..+...+...+.++ ..++.+|.+++..|++++|+.+|++++..+|.+ ..+++.+|.++..+|++++|+..|++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD-AEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444444444 459999999999999999999999999999998 7789999999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCc
Q 001357 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304 (1093)
Q Consensus 225 ~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 304 (1093)
.++|++..++..+|.++...|+ +++|+..|.+++.++|.+..++..++ ..
T Consensus 127 ~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~---------------------------~~ 176 (365)
T 4eqf_A 127 ELQPNNLKALMALAVSYTNTSH---QQDACEALKNWIKQNPKYKYLVKNKK---------------------------GS 176 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCHHHHCC----------------------------------
T ss_pred hcCCCCHHHHHHHHHHHHcccc---HHHHHHHHHHHHHhCccchHHHhhhc---------------------------cc
Confidence 9999999999999999999998 99999999999999887765544332 11
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001357 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (1093)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (1093)
...+..+|.++...|++++|+.+|.+++.. .|. ...+++.+|.++...|++++|+.+|++++...|.++.++..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 253 (365)
T 4eqf_A 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQ---NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL 253 (365)
T ss_dssp ------------CCHHHHHHHHHHHHHHHH---SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 245677899999999999999999999984 455 678899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC-------CCHHHHHHH
Q 001357 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE-------VPIEVLNNI 454 (1093)
Q Consensus 383 a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~~l 454 (1093)
|.+|...|++++|+..|++++..+|+++.++..+|.++ ..|++++|+.+|++++.+.|..... ....++..+
T Consensus 254 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l 333 (365)
T 4eqf_A 254 GATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAAL 333 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999998874332 125789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 001357 455 GVIHFEKGEFESAHQSFKDALG 476 (1093)
Q Consensus 455 a~~~~~~g~~~~A~~~~~~al~ 476 (1093)
+.++...|+.+.+.....+.+.
T Consensus 334 ~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 334 RIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHcCcHHHHHHHHHhhHH
Confidence 9999999999999888776544
No 25
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=4.4e-24 Score=239.91 Aligned_cols=261 Identities=11% Similarity=0.009 Sum_probs=230.0
Q ss_pred HHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCChHH
Q 001357 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-YSDSLEFYKRALQVHPSCPGA 198 (1093)
Q Consensus 120 a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~Al~~~~~al~~~p~~~~~ 198 (1093)
++.++|.++.+|..+|.++...|++++|+..|++++..+|++..+|+.+|.++...|+ +++|+..|++++.++|++ ..
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-~~ 167 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-YQ 167 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-HH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-HH
Confidence 5677888999999999999999999999999999999999999999999999999997 999999999999999999 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001357 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1093)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1093)
+|+.+|.++..+|++++|+..|++++.++|++..+|..+|.++...|+ +++|+..|.+++.++|.+..+|+.+|.++
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~---~~eAl~~~~~al~l~P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL---WDNELQYVDQLLKEDVRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999998 99999999999999999997777777777
Q ss_pred HH-cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcC-
Q 001357 279 FF-TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG- 356 (1093)
Q Consensus 279 ~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g- 356 (1093)
.. .|.+++|+ .+.++.+|.+++. ..|.+..+|+.++.++...|
T Consensus 245 ~~l~~~~~eA~--------------------------------~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~ 289 (382)
T 2h6f_A 245 SNTTGYNDRAV--------------------------------LEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGL 289 (382)
T ss_dssp HHTTCSCSHHH--------------------------------HHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCG
T ss_pred HHhcCcchHHH--------------------------------HHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCc
Confidence 66 33323332 2333577777776 55777788888888888877
Q ss_pred -CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HHhCCCCHHHHHHHHHHH
Q 001357 357 -DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG---------QIEKAQELLRKA-AKIDPRDAQAFIDLGELL 420 (1093)
Q Consensus 357 -~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~l~~~-l~~~p~~~~~~~~la~~~ 420 (1093)
++++|+..+.++ +.+|++..++..+|.+|...| .+++|+.+|+++ ++++|.....|..++..+
T Consensus 290 ~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 290 SKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp GGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 688899888887 888889999999999998874 258899999999 899999999998888876
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=1.7e-23 Score=233.00 Aligned_cols=271 Identities=15% Similarity=0.129 Sum_probs=192.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1093)
+...++.+|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++..+|.+ ..++..+|.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC-HHHHHHHHHH
Confidence 446789999999999999999999999999999999999999999999999999999999999999998 7789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH--------------HH-HHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENVEALVAL--------------AV-MDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l--------------a~-~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1093)
+...|++++|+..|.+++..+|.+...+..+ +. ++...|+ +.+|+..+.+++..+|.++.+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~- 174 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE---YRECRTLLHAALEMNPNDAQL- 174 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHH---HHHHHHHHHHHHHHSTTCHHH-
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc---HHHHHHHHHHHHhhCCCCHHH-
Confidence 9999999999999999999999987776665 33 3444444 666666666666666655544
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 001357 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (1093)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~ 351 (1093)
+..+|.++...|++++|+.+|.+++. ..|....++..+|.+
T Consensus 175 ------------------------------------~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 175 ------------------------------------HASLGVLYNLSNNYDSAAANLRRAVE---LRPDDAQLWNKLGAT 215 (327)
T ss_dssp ------------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHH
Confidence 44444444444555555555555544 234444555666666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHH
Q 001357 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR------------DAQAFIDLGEL 419 (1093)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~------------~~~~~~~la~~ 419 (1093)
+...|++++|+.+|++++...|.+..++..+|.++...|++++|+..|++++...|. +..++..++.+
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666665 45556666666
Q ss_pred H-hcCCHHHHHHHHHHHHHHHHh
Q 001357 420 L-ISSDTGAALDAFKTARTLLKK 441 (1093)
Q Consensus 420 ~-~~~~~~~A~~~~~~a~~~~~~ 441 (1093)
+ ..|+++.|...+++++...+.
T Consensus 296 ~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhcch
Confidence 6 566666666665555555443
No 27
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=1.5e-23 Score=235.51 Aligned_cols=259 Identities=9% Similarity=-0.017 Sum_probs=240.6
Q ss_pred CcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHcCCChhH
Q 001357 517 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN-LQLSIELVNEALKVNGKYPNA 595 (1093)
Q Consensus 517 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 595 (1093)
.+...|....+++.++.++...|++++|+..|.+++..+|++..+|+.+|.++...|+ +++|+.+|++++.++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 3457888999999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCH
Q 001357 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675 (1093)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 675 (1093)
|+++|.++...|++++|+..|++++...|. +..++..+|.+ +... |++++|+.+|++++.++|++.
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~-~~~~------------g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWV-IQEF------------KLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCCTTHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHH-HHHc------------CChHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999987 88999999999 9888 999999999999999999999
Q ss_pred HHHHHHHHHHHh-cCCchhH-----HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc--CHHHHHHHHHHHHHhhcCC
Q 001357 676 YAANGAGVVLAE-KGQFDVS-----KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG--NFALAMKMYQNCLRKFYYN 747 (1093)
Q Consensus 676 ~a~~~la~~~~~-~g~~~~A-----~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~ 747 (1093)
.+|+.+|.++.. .|.+++| +..|.+++...| ++..+|+++|.++...| ++.+|+..++.+ .. .+
T Consensus 235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-----~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p 306 (382)
T 2h6f_A 235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-----HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SH 306 (382)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TC
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CC
Confidence 999999999999 6666888 599999999998 78999999999999988 699999999887 44 66
Q ss_pred CCHHHHHHHHHHHHhhc--------c-HHHHHHHHHHH-HHhCCCCcchhhHHHHHHHHH
Q 001357 748 TDAQILLYLARTHYEAE--------Q-WQDCKKSLLRA-IHLAPSNYTLRFDAGVAMQKF 797 (1093)
Q Consensus 748 ~~~~~l~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~P~~~~~~~~la~~~~~~ 797 (1093)
.++.++..+|.+|...| + +++|+.+|+++ ++++|.....|..++.++..+
T Consensus 307 ~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 307 SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 67999999999999985 3 58999999999 999999999999888876554
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=4.5e-23 Score=229.68 Aligned_cols=274 Identities=13% Similarity=0.081 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHH
Q 001357 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1093)
Q Consensus 448 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 527 (1093)
...++.+|..+...|++++|+.+|++++. ..|....+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------------------------------------------~~~~~~~~ 57 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQ-------------------------------------------AAPEREEA 57 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------------HCTTCHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHH-------------------------------------------hCCCCHHH
Confidence 35677889999999999999999999887 34667888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHh--------
Q 001357 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML-------- 599 (1093)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------- 599 (1093)
++.+|.++...|++++|+..|.+++..+|.+..++..+|.++...|++++|+.++++++...|.+..++..+
T Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (327)
T 3cv0_A 58 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDID 137 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999988888777
Q ss_pred ------hh-hhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCC
Q 001357 600 ------GD-LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 672 (1093)
Q Consensus 600 ------~~-~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 672 (1093)
+. ++...|++++|+..|.+++...|. +..++..+|.+ |... |++++|+.+|.+++..+|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~-~~~~------------~~~~~A~~~~~~~~~~~~ 203 (327)
T 3cv0_A 138 DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVL-YNLS------------NNYDSAAANLRRAVELRP 203 (327)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHh------------ccHHHHHHHHHHHHHhCC
Confidence 66 688889999999999999988776 77788888888 8887 889999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCC----
Q 001357 673 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT---- 748 (1093)
Q Consensus 673 ~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---- 748 (1093)
.++.++..+|.++...|++++|+.+|+++++..| .++.+++++|.+|...|++++|+..|++++...|...
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINP-----GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 9999999999999999999999999999999887 6788899999999999999999999999998865411
Q ss_pred ------CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001357 749 ------DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1093)
Q Consensus 749 ------~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 783 (1093)
++.++..+|.++...|++++|..++++++...|.+
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 46788899999999999999999988877776643
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.91 E-value=1e-19 Score=221.27 Aligned_cols=459 Identities=12% Similarity=0.069 Sum_probs=326.1
Q ss_pred cCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHH
Q 001357 36 EQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ 115 (1093)
Q Consensus 36 e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~ 115 (1093)
+..+++---..+++|...|.+.+|+.+|++++-. +. .|++. ..+..+..++.+....++.. +.+.
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~-~s-~fs~n--~~LqnlLi~tAIkaD~~Rv~-----------eyI~ 1045 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NS-VFSEH--RNLQNLLILTAIKADRTRVM-----------EYIN 1045 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CC-ccccc--HHHHHHHHHHHHHhChhhHH-----------HHHH
Confidence 4556666677889999999999999999999733 22 23333 23333333444444333222 3333
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
.++..+ .-..|.++...|.+++|..+|+++- .+..+ +...+...|++++|..+++++ +.
T Consensus 1046 kLd~~d---------~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~nldrAiE~Aerv-----n~ 1104 (1630)
T 1xi4_A 1046 RLDNYD---------APDIANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIGNLDRAYEFAERC-----NE 1104 (1630)
T ss_pred Hhhhcc---------HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHhhHHHHHHHHHhc-----CC
Confidence 333222 2238999999999999999999972 11222 222234889999999999866 33
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001357 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275 (1093)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la 275 (1093)
+.+|+.+|.++...|++++|+.+|.++ +++..+..++.++...|+ +++|+.+|..+.+..+. +.+-..+|
T Consensus 1105 -p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGk---yEEAIeyL~mArk~~~e-~~Idt~La 1174 (1630)
T 1xi4_A 1105 -PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGN---WEELVKYLQMARKKARE-SYVETELI 1174 (1630)
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhccc-ccccHHHH
Confidence 778999999999999999999999875 788999999999999999 99999999999988744 33344689
Q ss_pred HHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHc
Q 001357 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (1093)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 355 (1093)
.+|.+.++++....+. . ......+..+|..+...|+|++|..+|.++- .|..++.++.+.
T Consensus 1175 faYAKl~rleele~fI----~-----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~-----------ny~rLA~tLvkL 1234 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHL 1234 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh-----------HHHHHHHHHHHh
Confidence 9999999888544332 1 1233567789999999999999999999863 388999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 001357 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT 434 (1093)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~ 434 (1093)
|+++.|++++.++ .+..+|...+.++...|+|..|..+... +.. ++..+..++..| ..|.+++|+.+++.
T Consensus 1235 ge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1235 GEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999998 4678999999999999999999988764 333 345566888888 99999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhc
Q 001357 435 ARTLLKKAGEEVPIEVLNNIGVIHFE--KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 512 (1093)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 512 (1093)
++.+.+. ...++..+|.++.+ -++.-+++++|...+...+..
T Consensus 1306 aL~Lera-----H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~------------------------------- 1349 (1630)
T 1xi4_A 1306 ALGLERA-----HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL------------------------------- 1349 (1630)
T ss_pred HhccChh-----HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh-------------------------------
Confidence 9877543 35677667776654 467778888887766532100
Q ss_pred cCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH------------hcCChHHHHHHHHHHHHHcCCHHHHHH
Q 001357 513 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF------------KYQDYVDAYLRLAAIAKARNNLQLSIE 580 (1093)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------------~~p~~~~~~~~la~~~~~~g~~~~A~~ 580 (1093)
..-.....|..+..+|.+-|+++.|+..+-.... ..+.+++.++..+..|. +....++.
T Consensus 1350 -------r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl--~~~P~~ln 1420 (1630)
T 1xi4_A 1350 -------RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLN 1420 (1630)
T ss_pred -------HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH--hhChHHHH
Confidence 0114677888999999999999999854433221 24566777777777776 34445555
Q ss_pred HHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHH
Q 001357 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 618 (1093)
Q Consensus 581 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (1093)
.+..++.-.-+.. ....++.+.+...-+..++..
T Consensus 1421 dLl~~l~~rlD~~----R~V~l~~~~~~l~lik~yl~~ 1454 (1630)
T 1xi4_A 1421 DLLMVLSPRLDHT----RAVNYFSKVKQLPLVKPYLRS 1454 (1630)
T ss_pred HHHHHhhhcCChH----HHHHHHHHcCChHHhHHHHHH
Confidence 5555553221211 122333444555555555443
No 30
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=4.2e-22 Score=215.43 Aligned_cols=254 Identities=13% Similarity=0.085 Sum_probs=191.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGI 203 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~l 203 (1093)
++..++..|.+++..|++++|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++. .|.+ ...+++.+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999998 4433 24458899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001357 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1093)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1093)
|.++...|++++|+..|.+++..+|.+..++..+|.++...|+ +++|+..|.+++..+|.++.++..+|...+..++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN---FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC---HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 9999999999999998888888887744445557
Q ss_pred hHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhcCCCCC-----chhhHHHHHHHHHHc
Q 001357 284 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD---YEKAGLYYMASVKEINKPHE-----FIFPYYGLGQVQLKL 355 (1093)
Q Consensus 284 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~-----~~~~~~~la~~~~~~ 355 (1093)
+++|+..+.+++... |....+++.+|.++...|+ +++|+..|.+++......+. ...++..+|.++...
T Consensus 158 ~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 158 YVKADSSFVKVLELK---PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp HHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 777777777777554 4445666667777776666 66677777766654322222 224555566666666
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001357 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387 (1093)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 387 (1093)
|++++|+.+|++++.++|+++.++..++.+..
T Consensus 235 ~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 66666666666666666666666655555443
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=7.3e-19 Score=213.91 Aligned_cols=512 Identities=13% Similarity=0.101 Sum_probs=352.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1093)
+|.---..+..|...|.+.+|+.+|++++ ..|+ +...-..++.+..+. +......+..+.-... .-.
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~e 1054 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APD 1054 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHH
Confidence 33344456777889999999999999998 4444 333333344444443 2233333333221111 233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001357 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1093)
+|.++..+|.+++|..+|+++- .+..+ +..++...++ +++|++++.++ +.+.+|+.+|.++...|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~n---ldrAiE~Aerv-----n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIGN---LDRAYEFAERC-----NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHhh---HHHHHHHHHhc-----CCHHHHHHHHHHHHhCC
Confidence 8899999999999999999962 22222 2222335555 88888888755 56899999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHH
Q 001357 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (1093)
Q Consensus 283 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (1093)
++++|+..|.++ .++..|..+|.++...|+|++|+++|..+.+..+ +. .+...+|.+|.+.+++++ +
T Consensus 1120 ~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~--~Idt~LafaYAKl~rlee-l 1186 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ES--YVETELIFALAKTNRLAE-L 1186 (1630)
T ss_pred CHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cc--cccHHHHHHHHhhcCHHH-H
Confidence 999999999765 4568899999999999999999999999887421 11 223358899999999884 4
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh
Q 001357 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK 441 (1093)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~ 441 (1093)
..| + ..+ +...+..+|..+...|++++|..+|.++ ..|..++.++ ..|+++.|++.+.++.
T Consensus 1187 e~f---I-~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~----- 1248 (1630)
T 1xi4_A 1187 EEF---I-NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN----- 1248 (1630)
T ss_pred HHH---H-hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----
Confidence 444 2 233 4566778999999999999999999986 4788999999 8999999999998872
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCC
Q 001357 442 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 521 (1093)
Q Consensus 442 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 521 (1093)
+..+|..++.++...|+|..|..+....+.
T Consensus 1249 -----n~~aWkev~~acve~~Ef~LA~~cgl~Iiv--------------------------------------------- 1278 (1630)
T 1xi4_A 1249 -----STRTWKEVCFACVDGKEFRLAQMCGLHIVV--------------------------------------------- 1278 (1630)
T ss_pred -----CHHHHHHHHHHHhhhhHHHHHHHHHHhhhc---------------------------------------------
Confidence 368889999999999999999988764222
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHcC-----CChh
Q 001357 522 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR--NNLQLSIELVNEALKVNG-----KYPN 594 (1093)
Q Consensus 522 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p-----~~~~ 594 (1093)
.+..+..++..|...|.+++|+.+++.++.++|.+...+..++.++.+- ++..+++++|...+.+.| ....
T Consensus 1279 --~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~ 1356 (1630)
T 1xi4_A 1279 --HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH 1356 (1630)
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHH
Confidence 4456668899999999999999999999999999999998888887754 577788888888777766 6788
Q ss_pred HHHHhhhhhhcccchHHHHHHHHHhhhc-----------CCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHH
Q 001357 595 ALSMLGDLELKNDDWVKAKETFRAASDA-----------TDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 663 (1093)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----------~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 663 (1093)
+|..+..+|.+.|+|+.|....-..... ....++..+...... |. +....++..
T Consensus 1357 lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~F-yl--------------~~~P~~lnd 1421 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQF-YL--------------EFKPLLLND 1421 (1630)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHH-HH--------------hhChHHHHH
Confidence 9999999999999999999544332211 111233333334433 33 334455555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 664 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 664 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
+..++.-.-+. .....++...|++.-+..++..+... ++..+--.+..+|....++.. ++..+..
T Consensus 1422 Ll~~l~~rlD~----~R~V~l~~~~~~l~lik~yl~~vq~~-------n~~~Vneal~el~ieeed~~~----Lr~si~~ 1486 (1630)
T 1xi4_A 1422 LLMVLSPRLDH----TRAVNYFSKVKQLPLVKPYLRSVQNH-------NNKSVNESLNNLFITEEDYQA----LRTSIDA 1486 (1630)
T ss_pred HHHHhhhcCCh----HHHHHHHHHcCChHHhHHHHHHHHHh-------cchhhhHHHHHHhcCccchHH----HHHHHhh
Confidence 55555322111 22344556677777777777666633 355666677777777666532 1112222
Q ss_pred hcCC---------CCHHHH--HHHHHHHH-hhccHHHHHHHHHH
Q 001357 744 FYYN---------TDAQIL--LYLARTHY-EAEQWQDCKKSLLR 775 (1093)
Q Consensus 744 ~~~~---------~~~~~l--~~la~~~~-~~g~~~~A~~~~~~ 775 (1093)
+.+- ..-.++ ..+|..++ +.|+|..|.+.+++
T Consensus 1487 ~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~ 1530 (1630)
T 1xi4_A 1487 YDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK 1530 (1630)
T ss_pred ccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHh
Confidence 1110 011222 34444444 45888888887653
No 32
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.89 E-value=6.2e-22 Score=230.06 Aligned_cols=387 Identities=12% Similarity=0.084 Sum_probs=275.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001357 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF---RSALTNFEKVLEIYPDNCETLKALGHI 385 (1093)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1093)
..+|..++..|++++|+.+|.++.+. ..+.+++.+|.+|...|++ ++|+.+|++++.. ++.+++.+|.+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-----g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-----GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----TCCTGGGTCC-------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 45788889999999999999999863 3456788899999999988 8999999999865 77889999997
Q ss_pred HHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 001357 386 YVQLG-----QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF 459 (1093)
Q Consensus 386 ~~~~g-----~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~ 459 (1093)
+...+ ++++|+.+|++++... ++.+++.|+.+| ..+....+...+.......+.. .+..++++|.+|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 77766 7889999999998854 455889999998 5544444433333333333221 3678889999999
Q ss_pred HcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcC
Q 001357 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539 (1093)
Q Consensus 460 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g 539 (1093)
..+.++++........... ...++.+++++|.+|...|
T Consensus 153 ~~~~~~~~~~~a~~~~~~a------------------------------------------~~~~~~a~~~Lg~~~~~~g 190 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAA------------------------------------------LNTTDICYVELATVYQKKQ 190 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHH------------------------------------------TTTCTTHHHHHHHHHHHTT
T ss_pred cCCCcccCHHHHHHHHHHH------------------------------------------HcCCHHHHHHHHHHHHHcC
Confidence 9986665555433322210 0123348999999999999
Q ss_pred ---ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCChhHHHHhhhh-h--hcccch
Q 001357 540 ---DTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDL-E--LKNDDW 609 (1093)
Q Consensus 540 ---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~--~~~g~~ 609 (1093)
++.+|+.+|+++....|.....++.+|.+|... +++++|+.+|+++. |.++.+++++|.+ + ...+++
T Consensus 191 ~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~ 267 (452)
T 3e4b_A 191 QPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDV 267 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCH
T ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCH
Confidence 999999999999999999888889999998765 79999999999987 8899999999998 4 568899
Q ss_pred HHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh--
Q 001357 610 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-- 687 (1093)
Q Consensus 610 ~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-- 687 (1093)
.+|+.+|+++.... +..+.+.||.+ |.... ... .++.+|+.+|+++. |.++.+.+.+|.+|..
T Consensus 268 ~~A~~~~~~Aa~~g---~~~A~~~Lg~~-y~~G~-g~~-------~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 268 EQMMKYLDNGRAAD---QPRAELLLGKL-YYEGK-WVP-------ADAKAAEAHFEKAV---GREVAADYYLGQIYRRGY 332 (452)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHH-HHHCS-SSC-------CCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHH-HHcCC-CCC-------CCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCC
Confidence 99999999998764 67788889988 76320 000 38999999999998 8899999999999887
Q ss_pred --cCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----hcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001357 688 --KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 761 (1093)
Q Consensus 688 --~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~ 761 (1093)
..++.+|+.+|+++.+. .++.+.++||.+|.. ..++.+|+.+|+++... .++.....++.+..
T Consensus 333 g~~~d~~~A~~~~~~Aa~~-------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~----g~~~a~~~l~~l~~ 401 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAARN-------GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ----DTPEANDLATQLEA 401 (452)
T ss_dssp TSSCCHHHHHHHHHHHHTT-------TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT----CCHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHhh-------ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 34899999999999874 367899999999985 45899999999999864 34555556665543
Q ss_pred h--hccHHHHHHHHHHHHHhC
Q 001357 762 E--AEQWQDCKKSLLRAIHLA 780 (1093)
Q Consensus 762 ~--~g~~~~A~~~~~~al~~~ 780 (1093)
. .++..+|...+++.....
T Consensus 402 ~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 402 PLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhc
Confidence 3 345566666666655443
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.6e-21 Score=208.86 Aligned_cols=241 Identities=12% Similarity=0.027 Sum_probs=225.4
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC-------hhH
Q 001357 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-------PNA 595 (1093)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 595 (1093)
..+..++.+|.++...|++++|+.+|.+++..+ .++.++..+|.++...|++++|+.++.+++...|.+ +.+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 367889999999999999999999999999999 889999999999999999999999999999999877 689
Q ss_pred HHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCH
Q 001357 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675 (1093)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 675 (1093)
+..+|.++...|++++|+..|.+++...|. +.+ +... |++++|+..+.+++..+|.++
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~-~~~~------------~~~~~a~~~~~~~~~~~~~~~ 139 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADI-LTKL------------RNAEKELKKAEAEAYVNPEKA 139 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHH-HHHH------------HHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHH-HHHH------------hHHHHHHHHHHHHHHcCcchH
Confidence 999999999999999999999999998775 344 6666 999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 001357 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLY 755 (1093)
Q Consensus 676 ~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~ 755 (1093)
.++..+|.++...|++++|+..|++++...| .++.+++++|.+|...|++++|+..|++++.. .+.++.++..
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~ 212 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIR 212 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHH
Confidence 9999999999999999999999999999998 67899999999999999999999999999998 5677999999
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhC------CCCcchhhHHHHH
Q 001357 756 LARTHYEAEQWQDCKKSLLRAIHLA------PSNYTLRFDAGVA 793 (1093)
Q Consensus 756 la~~~~~~g~~~~A~~~~~~al~~~------P~~~~~~~~la~~ 793 (1093)
+|.++...|++++|..+|++++.+. |.+..++..++.+
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999999999999999999999 8887777777654
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.9e-21 Score=206.74 Aligned_cols=240 Identities=18% Similarity=0.188 Sum_probs=179.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------HHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIR 200 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~ 200 (1093)
.+..++.+|.+++..|++++|+.+|++++..+ .++.++..+|.++...|++++|+..|.+++...|... ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 35678899999999999999999999999998 8899999999999999999999999999999887653 5778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1093)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1093)
+.+|.++..+|++++|+..|.+++.+.|. +.++...|+ +.+|+..+.+++..+|.++.++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~--------- 142 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRN---AEKELKKAEAEAYVNPEKAEEA--------- 142 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHH---HHHHHHHHHHHHHCCHHHHHHH---------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhH---HHHHHHHHHHHHHcCcchHHHH---------
Confidence 88999999999999999999999998886 345555666 8888888888888777665444
Q ss_pred cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHH
Q 001357 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1093)
Q Consensus 281 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1093)
+.+|.++...|++++|+.+|.+++. ..|....+++.+|.++...|++++
T Consensus 143 ----------------------------~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~ 191 (258)
T 3uq3_A 143 ----------------------------RLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPE 191 (258)
T ss_dssp ----------------------------HHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------------------HHHHHHHHHhcCHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHhCCHHH
Confidence 4455555555555555555555554 234445566666666666666666
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHH
Q 001357 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGE 418 (1093)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~------p~~~~~~~~la~ 418 (1093)
|+.+|++++..+|+++.++..+|.++...|++++|+..|++++.+. |.+..++..++.
T Consensus 192 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 192 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 6666666666666666666666777766677777777776666666 665555555443
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=2.1e-21 Score=201.60 Aligned_cols=199 Identities=18% Similarity=0.116 Sum_probs=141.2
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001357 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1093)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 204 (1093)
|.++.+++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++ ..+++.+|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY-LGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHH
Confidence 67778888888888888888888888888888888888888888888888888888888888888888888 66788888
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHH
Q 001357 205 LCRYKL-----------GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1093)
Q Consensus 205 ~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1093)
.++... |++++|+..|+++++++|+++.++..+|.++...|+ +++|+..|++++.++ .++.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE---RDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcc-cchHHHHH
Confidence 888888 777777777777777777777777777777777777 777777777777777 67766666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001357 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331 (1093)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 331 (1093)
+|.++...|++++|+..+++++... |..+.+++.+|.++...|++++|+..|.++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA---PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666666543 444556666666666666666666665544
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.88 E-value=2.2e-21 Score=225.35 Aligned_cols=317 Identities=17% Similarity=0.113 Sum_probs=157.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001357 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY---SDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~---~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1093)
..+|..++..|++++|+..|+++... .++.+++.+|.++...|++ .+|+.+|++++.. + +..++.+|.++.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~-~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---S-PRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---C-HHHHHHHHHHHH
Confidence 34566666666777777777666554 3555666666666666666 6666666666654 2 334566666555
Q ss_pred HcC-----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001357 209 KLG-----QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1093)
Q Consensus 209 ~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1093)
..+ ++++|+.+|++++.. +++.+++.||.+|...+....-..++..+.++... .++.+++.|+.+|...+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHHHHHHHHHHHTC
T ss_pred hCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC
Confidence 554 566666666666653 33446666666666554411112333334333322 234455556666665554
Q ss_pred hHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHc----C
Q 001357 284 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG---DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL----G 356 (1093)
Q Consensus 284 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~----g 356 (1093)
++.+...+........ ..++.+++.+|.+|...| ++++|+.+|.++.. ..+.....++.+|.+|... +
T Consensus 157 ~~~~~~~a~~~~~~a~--~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~---~g~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 157 YDQHLDDVERICKAAL--NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS---RGTVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGGHHHHHHHHHHHT--TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---TTCSCHHHHHHHHHHHTCGGGSSC
T ss_pred cccCHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCCCC
Confidence 4443333222221111 112236666666666666 66666666666665 3344444445666666444 4
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcC-----CHHHH
Q 001357 357 DFRSALTNFEKVLEIYPDNCETLKALGHI-Y--VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-----DTGAA 428 (1093)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~-----~~~~A 428 (1093)
++++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|+++... +++.+++.||.+|..| ++.+|
T Consensus 232 d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A 306 (452)
T 3e4b_A 232 DEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKAA 306 (452)
T ss_dssp CHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 6666666666655 5566666666665 3 3455666666666665543 3556666666666433 56666
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 001357 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSFKDALG 476 (1093)
Q Consensus 429 ~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 476 (1093)
+.+|+++. +. .+..++++|.+|.. ..++++|+.+|+++..
T Consensus 307 ~~~~~~Aa---~g-----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 307 EAHFEKAV---GR-----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHTTT---TT-----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHh---CC-----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 66665554 11 35556666655554 2356666666666554
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.88 E-value=3.3e-21 Score=208.40 Aligned_cols=252 Identities=13% Similarity=0.080 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 001357 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-- 161 (1093)
Q Consensus 84 ~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-- 161 (1093)
.++..+|.+|+..|+.. +|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++. .|.+
T Consensus 4 ~~~~~~a~~~~~~~~~~-----------~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~ 71 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYA-----------EAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK 71 (272)
T ss_dssp -CHHHHHHHHHTTTCHH-----------HHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT
T ss_pred HHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh
Confidence 35677888888888877 999999999999999999999999999999999999999999998 4443
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH-
Q 001357 162 --VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA- 238 (1093)
Q Consensus 162 --~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la- 238 (1093)
..++..+|.++...|++++|+..|++++..+|.+ ..++..+|.++..+|++++|+..|++++..+|.++.++..+|
T Consensus 72 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 150 (272)
T 3u4t_A 72 AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR-LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQ 150 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence 4569999999999999999999999999999999 778999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhccCCCCC-----chHHHHH
Q 001357 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ---HFLVEQLTETALAVTNHGPT-----KSHSYYN 310 (1093)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~-----~~~~~~~ 310 (1093)
.++. .++ +++|+..|.+++..+|.++.++..++.++...|+ +++|+..+++++......|. ...++..
T Consensus 151 ~~~~-~~~---~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 226 (272)
T 3u4t_A 151 AYYY-NKE---YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEY 226 (272)
T ss_dssp HHHH-TTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred HHHH-HHH---HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 5555 446 9999999999999999999999999999999999 88999999999987644444 3478999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHc
Q 001357 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (1093)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 355 (1093)
+|.+|...|++++|+.+|++++. ..|.+..++-.++.+....
T Consensus 227 l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 227 IAYYYTINRDKVKADAAWKNILA---LDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHC------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCccHHHHHHHhhhhhccc
Confidence 99999999999999999999998 5577777777776655443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=2.9e-21 Score=200.59 Aligned_cols=197 Identities=20% Similarity=0.203 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
..++..+|.++...|+.. +|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 5 ~~~~~~lg~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYD-----------AALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp CHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 457788999999988877 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-----------CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 001357 163 PALLGQACVEFNR-----------GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1093)
Q Consensus 163 ~a~~~la~~~~~~-----------g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1093)
.+++.+|.++... |++++|+..|++++..+|++ ..+++.+|.++..+|++++|+..|+++++++ +++
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~ 151 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-APLHLQRGLVYALLGERDKAEASLKQALALE-DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cch
Confidence 9999999999999 99999999999999999999 7889999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 232 EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1093)
Q Consensus 232 ~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (1093)
.++..+|.++...|+ +++|+..|++++..+|+++.++..++.++...|++++|+..++++-
T Consensus 152 ~~~~~la~~~~~~g~---~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 152 EIRSALAELYLSMGR---LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999 9999999999999999999999999999999999999999988754
No 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=6.2e-20 Score=199.49 Aligned_cols=190 Identities=13% Similarity=0.044 Sum_probs=113.8
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCC
Q 001357 48 REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE 127 (1093)
Q Consensus 48 ~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~ 127 (1093)
+-.+..|+|..|+..+++.....|. ........++.+|+.+|+.. .|+..++. .+|.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~--------~~~e~~~~l~r~yi~~g~~~-----------~al~~~~~---~~~~~ 64 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPE--------RDVERDVFLYRAYLAQRKYG-----------VVLDEIKP---SSAPE 64 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHH--------HHHHHHHHHHHHHHHTTCHH-----------HHHHHSCT---TSCHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCch--------hhHHHHHHHHHHHHHCCCHH-----------HHHHHhcc---cCChh
Confidence 4456667777777777765544332 12344555666777776655 56655543 24445
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 205 (1093)
..++..++..+...|++++|+..|++++.. +|+++.+++.+|.++...|++++|+..|++ |.+ ..++..+|.
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~-~~~~~~l~~ 138 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS-LECMAMTVQ 138 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC-HHHHHHHHH
Confidence 556666666777777777777777776664 477777777777777777777777777766 555 556666777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH--HhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL--QANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~--~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
++..+|++++|+..|++++..+|++....+..+.+.+ ..|+ +++|+..|++++..+|.++
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~---~~eA~~~~~~~l~~~p~~~ 200 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK---LQDAYYIFQEMADKCSPTL 200 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH---HHHHHHHHHHHHHHSCCCH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH---HHHHHHHHHHHHHhCCCcH
Confidence 7777777777777777777776665433332222111 1222 4555555555554444433
No 40
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.87 E-value=6.5e-21 Score=219.34 Aligned_cols=316 Identities=17% Similarity=0.190 Sum_probs=228.8
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----Ch
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-----CP 196 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-----~~ 196 (1093)
.....++.+|.+++..|++++|+.+|++++...|.++ .++..+|.+++..|++++|+.+|++++...+. ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4456778888888888888888888888888888874 57788888888888888888888888776311 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhhhHHh----------HHHHHHHHHHH
Q 001357 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEALVALAVMDLQANEAAG----------IRKGMEKMQRA 260 (1093)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~~~~~~----------~~~Al~~~~~a 260 (1093)
..++..+|.++..+|++++|+..|.+++.+.|.. ..++..+|.++...|+... +.++...
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~---- 162 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA---- 162 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH----
Confidence 5567778888888888888888888888775532 2345555555555443000 0000000
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 001357 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT---NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1093)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1093)
+++|+.++.+++... ...+....++..+|.++...|++++|+.+|.+++...+.
T Consensus 163 -----------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 163 -----------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 444444444444321 112334567888888888889999999888888875432
Q ss_pred CC---CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 338 PH---EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1093)
Q Consensus 338 ~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~ 408 (1093)
.+ ....++..+|.++...|++++|+.+|++++...|.. ..++..+|.+|...|++++|+.+|.+++.+.+.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 22 233478889999999999999999999998876544 678889999999999999999999999887543
Q ss_pred C------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHH
Q 001357 409 D------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAH 468 (1093)
Q Consensus 409 ~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~ 468 (1093)
. ..++..++.++ ..|++++|+.++++++.+.+..+.. ....++..+|.++...|+...+.
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 3 67888999999 9999999999999999987765432 12578888999999988774433
No 41
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=2.1e-20 Score=203.27 Aligned_cols=261 Identities=10% Similarity=0.026 Sum_probs=175.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001357 135 GQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1093)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1093)
...++..|+|..|+..++++...+|++ ..+...++.+|+..|+++.|+..++.. +|.. ..++..++..+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~-~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPE-LQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHH-HHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChh-HHHHHHHHHHHcCCCcH
Confidence 455677788888888877766666665 356677777888888888887766541 3332 44566677777777778
Q ss_pred HHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 214 GKARQAFQRALQL--DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1093)
Q Consensus 214 ~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1093)
+.|+..|++++.. +|+++.+++.+|.++...|+ +++|+..|.+ |.++.++..++.++...|++++|+..+
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~---~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN---PDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC---HHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC---HHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888877764 57777777778887777777 7777777776 677777777777777777777777777
Q ss_pred HHHHhccCCCCCchHHHHHHH--HHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 292 ETALAVTNHGPTKSHSYYNLA--RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1093)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1093)
++++... |.........+ ..+...|++++|+.+|++++. ..|..+.+++.+|.++...|++++|+..|++++
T Consensus 154 ~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~---~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 154 KKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD---KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7776653 22222222212 233344667777777777766 345566666777777777777777777777777
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHH
Q 001357 370 EIYPDNCETLKALGHIYVQLGQIEK-AQELLRKAAKIDPRDAQAF 413 (1093)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~~~-A~~~l~~~l~~~p~~~~~~ 413 (1093)
..+|+++.++.++|.++...|++.+ +..++++++.++|+++.+.
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 7777777777777777777776654 4566667777777766554
No 42
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.86 E-value=6.5e-21 Score=219.32 Aligned_cols=248 Identities=17% Similarity=0.175 Sum_probs=199.0
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC
Q 001357 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKI------DPR 408 (1093)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~~~l~~------~p~ 408 (1093)
.....+++.+|.++...|++++|+.+|++++...|.++ .++..+|.++...|++++|+.+|++++.+ .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34455677788888888888888888888888877763 56778888888888888888888888765 244
Q ss_pred CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCC--------------------HHH
Q 001357 409 DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE--------------------FES 466 (1093)
Q Consensus 409 ~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~la~~~~~~g~--------------------~~~ 466 (1093)
...++..+|.++ ..|++++|+.++.+++.+.+..+... ...++.++|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 467788888888 88888888888888888877653221 15688999999999999 999
Q ss_pred HHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHH
Q 001357 467 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546 (1093)
Q Consensus 467 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 546 (1093)
|+.+|.+++...... ...+....++.++|.++...|++++|+.
T Consensus 166 A~~~~~~al~~~~~~-------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 166 AVDFYEENLSLVTAL-------------------------------------GDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHT-------------------------------------TCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHHHhc-------------------------------------cCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 999999888742110 0234567789999999999999999999
Q ss_pred HHHHHHHhcCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC------hhHHHHhhhhhhcccchHHHHH
Q 001357 547 LYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKE 614 (1093)
Q Consensus 547 ~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 614 (1093)
.|.+++...|.. ..++..+|.++...|++++|+.++++++.+.|.. ..++..+|.++...|++++|..
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 999999876543 3489999999999999999999999999987765 5688899999999999999999
Q ss_pred HHHHhhhcC
Q 001357 615 TFRAASDAT 623 (1093)
Q Consensus 615 ~~~~~l~~~ 623 (1093)
.|.+++...
T Consensus 289 ~~~~a~~~~ 297 (406)
T 3sf4_A 289 YHLKHLAIA 297 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887753
No 43
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.84 E-value=5.2e-20 Score=212.39 Aligned_cols=283 Identities=16% Similarity=0.061 Sum_probs=240.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHH
Q 001357 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1093)
Q Consensus 448 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 527 (1093)
...+..+|..++..|++++|+.+|++++...+. .......+
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~---------------------------------------~~~~~~~~ 88 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE---------------------------------------DLRTLSAI 88 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc---------------------------------------ChhHHHHH
Confidence 466778999999999999999999999984210 00112368
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh------cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------cCCChhH
Q 001357 528 LFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV------NGKYPNA 595 (1093)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~ 595 (1093)
++.+|.++...|++++|+.+|.+++.. .|....++..+|.++...|++++|+.++.+++.+ .|....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 899999999999999999999999987 5777889999999999999999999999999998 4556679
Q ss_pred HHHhhhhhhcccc-----------------hHHHHHHHHHhhhcCC-----CCChHHHHHhHhHHHHHHHhhcccCchHH
Q 001357 596 LSMLGDLELKNDD-----------------WVKAKETFRAASDATD-----GKDSYATLSLGNWNYFAALRNEKRAPKLE 653 (1093)
Q Consensus 596 ~~~l~~~~~~~g~-----------------~~~A~~~~~~~l~~~~-----~~d~~~~~~l~~~~y~~~~~~~~~~~~~~ 653 (1093)
+..+|.++...|+ +++|+..|.+++...+ .....++..+|.+ |...
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-~~~~----------- 236 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNT-YYLL----------- 236 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHT-----------
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHc-----------
Confidence 9999999999999 9999999999887532 1233477788888 8888
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHH
Q 001357 654 ATHLEKAKELYTRVIVQHTSNLY------AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFA 726 (1093)
Q Consensus 654 ~~~~~~A~~~~~~~l~~~p~~~~------a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~lg~~~~~ 726 (1093)
|++++|+.+|++++...|.... ++..+|.++...|++++|+.+|++++...+.... .....++.++|.+|..
T Consensus 237 -g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 315 (411)
T 4a1s_A 237 -GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL 315 (411)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998775333 8899999999999999999999999998863211 1236789999999999
Q ss_pred hcCHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001357 727 QGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1093)
Q Consensus 727 ~g~~~~A~~~~~~al~~~~~~~~----~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~ 782 (1093)
+|++++|+.+|++++...+...+ ..++..+|.+|...|++++|..+|++++.+.+.
T Consensus 316 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 316 LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 99999999999999998755444 668889999999999999999999999999864
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.84 E-value=1.4e-19 Score=195.70 Aligned_cols=248 Identities=14% Similarity=0.108 Sum_probs=185.9
Q ss_pred hHHHHHHHHHHHHHHHhcC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 001357 106 KEEHFILATQYYNKASRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181 (1093)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 181 (1093)
..++|++|+..|++++... |.++.+++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 3578889999999999873 456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 001357 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1093)
Q Consensus 182 l~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1093)
+.+|++++..+|.+ ..+++.+|.++...|++++|+..|++++.++|++......++.+ ...|+ +.+|+..+.+++
T Consensus 97 ~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~---~~~A~~~~~~~~ 171 (275)
T 1xnf_A 97 YEAFDSVLELDPTY-NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLD---EKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHC---HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccc-cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcC---HHHHHHHHHHHH
Confidence 99999999999998 77899999999999999999999999999999998776666544 45566 999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 001357 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340 (1093)
Q Consensus 262 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 340 (1093)
...|.+...+. ++.++...+++++|+..+..++...+. .+..+.+++.+|.+|...|++++|+.+|.+++. ..|.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~ 247 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA---NNVH 247 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCCT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCch
Confidence 98887765443 556666666666677666666543211 011234555555555555555555555555554 2222
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHH
Q 001357 341 FIFPYYGLGQVQLKLGDFRSALTNF 365 (1093)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1093)
.. ...+.++...|++++|+..|
T Consensus 248 ~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TC---HHHHHHHHHHHHHHHC----
T ss_pred hH---HHHHHHHHHHHHHHhhHHHH
Confidence 21 12244445555555555444
No 45
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.84 E-value=5.3e-20 Score=212.31 Aligned_cols=247 Identities=16% Similarity=0.213 Sum_probs=140.7
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCC
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQV------HPSC 195 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~~al~~------~p~~ 195 (1093)
.....++.+|..++..|++++|+.+|++++...|.++ .++..+|.+++..|++++|+.+|++++.. .|..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3445667788888888888888888888888888776 46778888888888888888888888776 2333
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHhhhH--------------HhHHHHHH
Q 001357 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQL------DPENVEALVALAVMDLQANEA--------------AGIRKGME 255 (1093)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~la~~~~~~~~~--------------~~~~~Al~ 255 (1093)
..++..+|.++...|++++|+..|.+++.+ .|....++..+|.++...|+. ..+++|+.
T Consensus 126 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 126 -AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 556777788888888888888888877766 333444555555555554430 00333333
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 001357 256 KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 335 (1093)
Q Consensus 256 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 335 (1093)
.+.+++.+.+. ....+....++..+|.+|...|++++|+.+|.+++...
T Consensus 205 ~~~~al~~~~~-------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 205 FYQENLKLMRD-------------------------------LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHH-------------------------------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------------------------cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 33333322100 01112223455555555555555555555555555432
Q ss_pred CCC---CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 336 NKP---HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1093)
Q Consensus 336 ~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 404 (1093)
+.. .....++..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++.
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 1112244455555555555555555555555443321 33444455555555555555555554443
No 46
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.84 E-value=1.5e-19 Score=201.70 Aligned_cols=283 Identities=13% Similarity=0.055 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHH
Q 001357 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1093)
Q Consensus 448 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 527 (1093)
...+...|..++..|++++|+.+|++++...+. ..+....+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~---------------------------------------~~~~~~~~ 45 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE---------------------------------------DLKTLSAI 45 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc---------------------------------------cHHHHHHH
Confidence 345677899999999999999999999984210 01112578
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh------cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh------H
Q 001357 528 LFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------A 595 (1093)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~ 595 (1093)
+..+|.++...|++++|+.++.+++.. .|....++..+|.++...|++++|+.++.+++.+.+.... +
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 889999999999999999999999876 4455789999999999999999999999999998765433 8
Q ss_pred HHHhhhhhhcccc--------------------hHHHHHHHHHhhhcCCC-----CChHHHHHhHhHHHHHHHhhcccCc
Q 001357 596 LSMLGDLELKNDD--------------------WVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRAP 650 (1093)
Q Consensus 596 ~~~l~~~~~~~g~--------------------~~~A~~~~~~~l~~~~~-----~d~~~~~~l~~~~y~~~~~~~~~~~ 650 (1093)
+..+|.++...|+ +++|+..+.+++..... ....++..+|.+ |...
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~-~~~~-------- 196 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNT-HYLL-------- 196 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHH--------
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHh--------
Confidence 8999999999999 99999999998764211 123467788888 8888
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCC-CCCchhHHHHHHHH
Q 001357 651 KLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHV 723 (1093)
Q Consensus 651 ~~~~~~~~~A~~~~~~~l~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~lg~~ 723 (1093)
|++++|+.+|++++...|.. ..++..+|.++...|++++|+.+|++++...+... ......++.++|.+
T Consensus 197 ----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (338)
T 3ro2_A 197 ----GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 272 (338)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 99999999999999876543 33889999999999999999999999999876321 11126788999999
Q ss_pred HHHhcCHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001357 724 YFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1093)
Q Consensus 724 ~~~~g~~~~A~~~~~~al~~~~~~~~----~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~ 782 (1093)
|...|++++|+.+|++++..++...+ ..++..+|.+|...|++++|..+|++++.+.+.
T Consensus 273 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 273 YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 99999999999999999998765544 668889999999999999999999999998875
No 47
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.83 E-value=2.1e-19 Score=200.45 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----CChHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVHP-----SCPGAI 199 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p-----~~~~~~ 199 (1093)
..++..|..++..|++++|+.+|++++...|.++ .++..+|.++...|++++|+.+|++++...+ .....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4566777777788888888888888877777773 5667777777777777777777777766521 112455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001357 200 RLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
+..+|.++...|++++|+..|.+++.+.|
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 114 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISR 114 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 66677777777777777777777766544
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.83 E-value=3.1e-19 Score=189.07 Aligned_cols=215 Identities=19% Similarity=0.215 Sum_probs=126.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1093)
.+..++.+|.+++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|++++...|.. ..++..+|.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA-ATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-hHHHHHHHHH
Confidence 345677778888888888888888888888888888888888888888888888888888888888777 6667778888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1093)
+...|++++|+..|++++..+|.+..++..+|.++...|+ +++|+..+.+++...|.++.++..
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~------------- 164 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ---PKLALPYLQRAVELNENDTEARFQ------------- 164 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHCTTCHHHHHH-------------
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCccHHHHHH-------------
Confidence 8888888888888888888777777777777777777776 777777777777666655533333
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 001357 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1093)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1093)
+|.++...|++++|+.+|.+++. ..|....++..+|.++...|++++|+.+|+
T Consensus 165 ------------------------l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 165 ------------------------FGMCLANEGMLDEALSQFAAVTE---QDPGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp ------------------------HHHHHHHHTCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred ------------------------HHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 33333333333333333433333 123333444455555555555555555555
Q ss_pred HHHHhCCCcHHHHHHHHHH
Q 001357 367 KVLEIYPDNCETLKALGHI 385 (1093)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~ 385 (1093)
+++..+|++..++..++.+
T Consensus 218 ~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 218 KAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHCTTCHHHHHHHTC-
T ss_pred HHHccCcchHHHHHHHHHH
Confidence 5555555555554444443
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=9.7e-19 Score=192.60 Aligned_cols=255 Identities=16% Similarity=0.171 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q 001357 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLA-------KGEV-------EQASSAFKIVLE-ADRDNVPALLGQACVEFNR 175 (1093)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~ 175 (1093)
.+|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+.+|++++. .+|++..+|+.+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 589999999999999999999999999874 5885 999999999999 6999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hhhHHhHHHHH
Q 001357 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-ANEAAGIRKGM 254 (1093)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~~~~~~~~~Al 254 (1093)
|++++|..+|++++...|.+...+|..+|.++.+.|++++|+..|.++++..|.+..++...+.+... .|+ +++|+
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~---~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD---KSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC---HHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---HHHHH
Confidence 99999999999999999988434899999999999999999999999999999998888877766543 577 99999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001357 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP-TKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1093)
Q Consensus 255 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1093)
..|++++..+|.++.++..++.++...|++++|..+|++++.....+| .....|..++..+...|+++.|..++.++++
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887533334 3567788888888888888888888888888
Q ss_pred hcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001357 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (1093)
Q Consensus 334 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (1093)
..|..+.... ++.+ ..-.+++.++|.++..+..+|
T Consensus 270 ~~p~~~~~~~----~~~~-----------~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 270 AFREEYEGKE----TALL-----------VDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp HTTTTTSSCH----HHHH-----------HTTTCBTTBCSSCHHHHHTTT
T ss_pred Hcccccccch----HHHH-----------HHHHHhcccCCCCHHHHHhcC
Confidence 6554333321 1111 011145567788888777665
No 50
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.82 E-value=6.1e-16 Score=184.83 Aligned_cols=449 Identities=9% Similarity=-0.045 Sum_probs=328.8
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR---YSDSLEFYKRA 188 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~---~~~Al~~~~~a 188 (1093)
+-+..|+..+..+|.+...|..++..+...+.+..+..+|++++...|.+...|...+......|+ +..+..+|+++
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 567788999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhCC--CChHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhh------hHH
Q 001357 189 LQVHP--SCPGAIRLGIGLCRYKLGQL--------GKARQAFQRALQL----DPENVEALVALAVMDLQAN------EAA 248 (1093)
Q Consensus 189 l~~~p--~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~----~p~~~~a~~~la~~~~~~~------~~~ 248 (1093)
+...| .+ ..+|..........++. +....+|++++.. +|.+...|........... ..+
T Consensus 130 l~~~~~~~s-v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 130 LSKELGNND-LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp TCSSSCCCC-HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHhcCCCCC-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 99984 34 45666666555555543 3345888988863 6777778877766544211 112
Q ss_pred hHHHHHHHHHHHHHhCCCc-H-HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 001357 249 GIRKGMEKMQRAFEIYPYC-A-MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326 (1093)
Q Consensus 249 ~~~~Al~~~~~al~~~p~~-~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 326 (1093)
.++.+..+|.+++.+ |.. . .++......-...+.. .+...+ . .....|..|..
T Consensus 209 ~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~-~a~~~~--------------------~---e~~~~y~~Ar~ 263 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQL-TARRHI--------------------G---ELSAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTT-THHHHH--------------------H---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcc-hHHHHH--------------------H---HhhHHHHHHHH
Confidence 378888999999965 432 2 2222111111000000 011110 0 01123444444
Q ss_pred HHHHHHH---hc----CCC---------C-------CchhhHHHHHHHHHHcCC---------HHHHHHHHHHHHHhCCC
Q 001357 327 YYMASVK---EI----NKP---------H-------EFIFPYYGLGQVQLKLGD---------FRSALTNFEKVLEIYPD 374 (1093)
Q Consensus 327 ~~~~al~---~~----~~~---------~-------~~~~~~~~la~~~~~~g~---------~~~A~~~~~~~l~~~p~ 374 (1093)
.|...-. .+ +.. | .....|..... +...+ ......+|++++...|.
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~--fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~ 341 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIR--WESDNKLELSDDLHKARMTYVYMQAAQHVCF 341 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHH--HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHH--HHHhCCccccchhhHHHHHHHHHHHHHHcCC
Confidence 4433221 11 000 1 00122333322 22222 23456889999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcC------CC-
Q 001357 375 NCETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAG------EE- 445 (1093)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~-~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~------~~- 445 (1093)
++.+|+..+..+...|+.++|. .+|++++...|.+..+|+.++.+. ..|+++.|..+|++++...+... .+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 9999999999999999999997 999999999999999999999999 89999999999999998653110 01
Q ss_pred ----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCC
Q 001357 446 ----------VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG 515 (1093)
Q Consensus 446 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 515 (1093)
....+|...+.+..+.|+.+.|..+|.+|+...
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~------------------------------------- 464 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK------------------------------------- 464 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------------------------------------
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------------------------------------
Confidence 023567777888888999999999999998731
Q ss_pred CCcCCCCchHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC---C
Q 001357 516 NHVELPWNKVTVLFNLARLLEQIH-DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG---K 591 (1093)
Q Consensus 516 ~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~ 591 (1093)
.+....++...|.+....+ +++.|..+|+.+++..|+.+..+...+......|+.+.|..+|++++...| .
T Consensus 465 -----~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 465 -----KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp -----GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred -----CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 1123455666676666655 489999999999999999999998999999999999999999999999988 3
Q ss_pred ChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHH
Q 001357 592 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 630 (1093)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~ 630 (1093)
...+|..+..+....|+.+.+..+++++....|+.+...
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~ 578 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLE 578 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHH
Confidence 566888999999999999999999999999998855443
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.82 E-value=8.2e-18 Score=181.77 Aligned_cols=231 Identities=18% Similarity=0.218 Sum_probs=157.6
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEFYKRALQVHPSCPGAI 199 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~ 199 (1093)
+|.++.+++.+|.+++..|++++|+.+|++++. |.++.+++.+|.++.. .+++++|+.+|++++..+ + +.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y-SNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-HHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C-HHH
Confidence 467778888888888888888888888888877 6777888888888888 888888888888888775 3 566
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hhhHHhHHHHHHHHHHHHHhCCCcHHHH
Q 001357 200 RLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ----ANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1093)
Q Consensus 200 ~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1093)
++.+|.+|.. .+++++|+..|++++.. +++.++..+|.++.. .++ +++|+..|++++... ++.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~---~~~A~~~~~~a~~~~--~~~-- 147 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRD---FKKAVEYFTKACDLN--DGD-- 147 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC---HHHHHHHHHHHHHTT--CHH--
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccC---HHHHHHHHHHHHhcC--cHH--
Confidence 7788888888 88888888888888776 367777777777777 666 777777777776654 333
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCCchhhHHH
Q 001357 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1093)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1093)
+++.+|.+|.. .+++++|+.+|+++++. ....+++.
T Consensus 148 -----------------------------------a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~ 187 (273)
T 1ouv_A 148 -----------------------------------GCTILGSLYDAGRGTPKDLKKALASYDKACDL-----KDSPGCFN 187 (273)
T ss_dssp -----------------------------------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHH
Confidence 44455555555 55566666666655541 23455566
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCH
Q 001357 348 LGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRDA 410 (1093)
Q Consensus 348 la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~~l~~~p~~~ 410 (1093)
+|.+|.. .+++++|+.+|++++...| +.++..+|.+|.. .+++++|+.+|++++...|.+.
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 6666666 6666666666666665543 5566666666666 6666666666666666655443
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.82 E-value=8.5e-18 Score=181.64 Aligned_cols=228 Identities=17% Similarity=0.276 Sum_probs=175.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHH
Q 001357 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEA 233 (1093)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a 233 (1093)
+|.++.+++.+|.++...|++++|+.+|++++. |.+ +.+++.+|.++.. .+++++|+..|+++++.+ ++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~-~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKE-NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCC-HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence 356666777777777777777777777777766 444 4556667777776 666666666666666553 5556
Q ss_pred HHHHHHHHHH----hhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHH
Q 001357 234 LVALAVMDLQ----ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309 (1093)
Q Consensus 234 ~~~la~~~~~----~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 309 (1093)
+..+|.++.. .++ +.+|+..|++++.. ..+.+++
T Consensus 77 ~~~lg~~~~~g~~~~~~---~~~A~~~~~~a~~~---------------------------------------~~~~a~~ 114 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQN---TNKALQYYSKACDL---------------------------------------KYAEGCA 114 (273)
T ss_dssp HHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHT---------------------------------------TCHHHHH
T ss_pred HHHHHHHHhCCCCcccC---HHHHHHHHHHHHHc---------------------------------------CCccHHH
Confidence 6666666555 554 55555555555443 1346778
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001357 310 NLARSYHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKA 381 (1093)
Q Consensus 310 ~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~ 381 (1093)
.+|.+|.. .+++++|+.+|.+++.. ....+++.+|.++.. .+++++|+.+|++++.. .++.++..
T Consensus 115 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 187 (273)
T 1ouv_A 115 SLGGIYHDGKVVTRDFKKAVEYFTKACDL-----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFN 187 (273)
T ss_dssp HHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence 88888888 89999999999999872 256789999999999 99999999999999987 46899999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h----cCCHHHHHHHHHHHHHHHHh
Q 001357 382 LGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I----SSDTGAALDAFKTARTLLKK 441 (1093)
Q Consensus 382 la~~~~~----~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~----~~~~~~A~~~~~~a~~~~~~ 441 (1093)
+|.+|.. .+++++|+.+|++++...| +.++..++.++ . .+++++|+.+|++++...+.
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 9999999 9999999999999999866 88999999999 7 89999999999999987543
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.82 E-value=1e-18 Score=176.26 Aligned_cols=172 Identities=16% Similarity=0.207 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001357 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1093)
Q Consensus 82 ~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1093)
...+++.||.+|...|+.+ +|+..|+++++++|+++.+++.+|.++...|++++|+..+.+++...|++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~ 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFD-----------GAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh
Confidence 3557777888888777766 88888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1093)
+.++..+|.++...++++.|+..+.+++...|.+ ..++..+|.++..+|++++|+..|+++++++|.++.++..+|.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY 151 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 8888888888888888888888888888888888 677888888888888888888888888888888888888888888
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 242 LQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
...|+ +++|+..|+++++++|+++
T Consensus 152 ~~~g~---~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 152 EGKGL---RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHTTC---HHHHHHHHHHHHHTTHHHH
T ss_pred HHCCC---HHHHHHHHHHHHhCCccCH
Confidence 88888 8888888888888888764
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=8.4e-20 Score=197.56 Aligned_cols=253 Identities=14% Similarity=0.126 Sum_probs=174.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001357 135 GQLLLAKGEVEQASSAFKIVLEAD----RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1093)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1093)
+..+...|++++|+..|++++... |.++.+++.+|.++...|++++|+..|++++..+|.+ ..+++.+|.++...
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-PEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHc
Confidence 334455688999999999999873 4567889999999999999999999999999999998 77899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 001357 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1093)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1093)
|++++|+..|.+++.++|.++.++..+|.++...|+ +++|+..|.+++..+|.++.....++.. ...|++++|+..
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~ 166 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR---DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEV 166 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHH
Confidence 999999999999999999999999999999999998 9999999999999999888655444433 445666666666
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1093)
Q Consensus 291 ~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1093)
+..++...+.. ... +.++..+...+++++|+..+.+++...+. .+....+++.+|.++...|++++|+.+|++++
T Consensus 167 ~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 167 LKQHFEKSDKE---QWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHSCCC---STH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcc---hHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66665543222 112 23555555555666666666555431110 01113445555555555555555555555555
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 370 EIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (1093)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 399 (1093)
..+|.+...+ +.++...|++++|+..|
T Consensus 243 ~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 ANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred hCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 5555442222 44444555555555444
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.82 E-value=1.2e-18 Score=203.62 Aligned_cols=238 Identities=12% Similarity=0.015 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHHhchhhhh---hhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHhC
Q 001357 83 IAILNALGVYYTYLGKIETK---QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV-EQASSAFKIVLEAD 158 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~---~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~-~~A~~~~~~al~~~ 158 (1093)
+..+..+...|+........ ...-.+.+.+|+..+..+....|.++.+++.+|.++...|++ ++|+.+|++++..+
T Consensus 54 ~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~ 133 (474)
T 4abn_A 54 VDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE 133 (474)
T ss_dssp HHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC
Confidence 33444555555554433321 123456688999999999999999999999999999999999 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCC
Q 001357 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL---------GQLGKARQAFQRALQLDPE 229 (1093)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 229 (1093)
|+++.+|+.+|.++...|++++|+.+|++++..+|+ ..++..+|.++..+ |++++|+..|++++.++|+
T Consensus 134 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 211 (474)
T 4abn_A 134 PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL 211 (474)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999998 47899999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHh--------hhHHhHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 001357 230 NVEALVALAVMDLQA--------NEAAGIRKGMEKMQRAFEIYP---YCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298 (1093)
Q Consensus 230 ~~~a~~~la~~~~~~--------~~~~~~~~Al~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (1093)
+..+|..+|.++... |+ +++|+..|++++.++| .++.+++.+|.+|...|++++|+..+.+++...
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKI---SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHH---HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhhccccch---HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999988 77 9999999999999999 788777777777777777777777776666543
Q ss_pred CCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 001357 299 NHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328 (1093)
Q Consensus 299 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (1093)
|....++..++.++...|++++|+..+
T Consensus 289 ---p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 289 ---PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566666666666666666666544
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=1.1e-18 Score=184.82 Aligned_cols=216 Identities=18% Similarity=0.186 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
...+..+|.+|...|+.. +|+.+|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|.+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~-----------~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 91 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYE-----------KAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA 91 (243)
T ss_dssp ------------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhhCHH-----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch
Confidence 445666777777666655 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1093)
.++..+|.++...|++++|+.+|++++...|.+ ..+++.+|.++...|++++|+..|.+++...|.+..++..+|.++.
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 7789999999999999999999999999999999999999999999
Q ss_pred HhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHH
Q 001357 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316 (1093)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~ 316 (1093)
..|+ +++|+..|.+++..+|.++.++..++.++...|++++|...+++++... |....++..++.+..
T Consensus 171 ~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 171 NEGM---LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ---PDHMLALHAKKLLGH 238 (243)
T ss_dssp HHTC---CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC---TTCHHHHHHHTC---
T ss_pred HcCC---HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC---cchHHHHHHHHHHHh
Confidence 9999 9999999999999999999888888888888888888888888888654 445566665554443
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.82 E-value=3.2e-18 Score=182.46 Aligned_cols=213 Identities=19% Similarity=0.148 Sum_probs=154.4
Q ss_pred cCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 001357 123 IDMHE-PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1093)
Q Consensus 123 ~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1093)
.+|.+ +.+++.+|.+++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|++++...|.+ ..+++
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~ 109 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN-ARVLN 109 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-HHHHH
Confidence 45555 67888899999999999999999999999999999999999999999999999999999999998888 67788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQ--LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1093)
.+|.++...|++++|+..|.+++. ..|.+..++..+|.++...|+ +++|+..|.+++...|.++.++..
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~------ 180 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK---PAQAKEYFEKSLRLNRNQPSVALE------ 180 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSCCHHHHHH------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCcccHHHHHH------
Confidence 889999999999999999998888 777777778888888877777 777777777777777666544433
Q ss_pred HcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHH
Q 001357 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1093)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1093)
+|.++...|++++|+.+|.+++. ..|....++..++.++...|+++
T Consensus 181 -------------------------------la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 181 -------------------------------MADLLYKEREYVPARQYYDLFAQ---GGGQNARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp -------------------------------HHHHHHHTTCHHHHHHHHHHHHT---TSCCCHHHHHHHHHHHHHTTCHH
T ss_pred -------------------------------HHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHccCHH
Confidence 44444444444444444444443 23334444555555555555555
Q ss_pred HHHHHHHHHHHhCCCcHHHH
Q 001357 360 SALTNFEKVLEIYPDNCETL 379 (1093)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~ 379 (1093)
+|+.++++++...|+++.+.
T Consensus 227 ~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 227 TAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHH
Confidence 55555555555555554443
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=7e-18 Score=176.03 Aligned_cols=141 Identities=15% Similarity=0.137 Sum_probs=96.6
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1093)
+|.++.+++.+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++...|.+ ..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l 82 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS-AEINNNY 82 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHH
Confidence 456667777777777777777777777777777777777777777777777777777777777777777776 5566777
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 204 GLCRYKL-GQLGKARQAFQRALQ--LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 204 a~~~~~~-g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
|.++... |++++|+..|++++. ..|.+..++..+|.++...|+ +++|+..|.+++...|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~ 147 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ---FGLAEAYLKRSLAAQPQFP 147 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCc
Confidence 7777777 777777777777776 444455555556665555555 5555555555555555444
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=8.9e-18 Score=175.20 Aligned_cols=218 Identities=17% Similarity=0.091 Sum_probs=146.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 001357 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1093)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1093)
.|.++.+++.+|.+++..|++++|+.+|++++...|.+ ..++..+|.++...|++++|+..|.+++..+|.+..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN-ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34445555555555555555555555555555555555 44455555555555555555555555555555555555555
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHh
Q 001357 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317 (1093)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 317 (1093)
|.++...+ |++++|+.++.+++. .+..|....+++.+|.++..
T Consensus 83 ~~~~~~~~------------------------------------~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 125 (225)
T 2vq2_A 83 GWFLCGRL------------------------------------NRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAK 125 (225)
T ss_dssp HHHHHTTT------------------------------------CCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc------------------------------------CcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHH
Confidence 54444440 444444444444444 22334556777888888888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHH
Q 001357 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP-DNCETLKALGHIYVQLGQIEKAQ 396 (1093)
Q Consensus 318 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~ 396 (1093)
.|++++|+.+|.+++. ..|....++..+|.++...|++++|+.+|++++...| .+..++..++.++...|+.+.|.
T Consensus 126 ~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 126 QGQFGLAEAYLKRSLA---AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp TTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 8888888888888887 3456677888888888889999999999998888888 88888888888888888999888
Q ss_pred HHHHHHHHhCCCCHHHHHHH
Q 001357 397 ELLRKAAKIDPRDAQAFIDL 416 (1093)
Q Consensus 397 ~~l~~~l~~~p~~~~~~~~l 416 (1093)
.+++.+....|+++.+...+
T Consensus 203 ~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 203 EYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHh
Confidence 88888888888888776544
No 60
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=4.8e-18 Score=181.09 Aligned_cols=212 Identities=16% Similarity=0.103 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001357 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (1093)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~ 277 (1093)
.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|+ +.+|+..|.+++..+|.++.++..++.+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEME---PKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555 5555555555555555555555555555
Q ss_pred HHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCC
Q 001357 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357 (1093)
Q Consensus 278 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~ 357 (1093)
+...|++++|+.++.+++. .+..|....+++.+|.++...|++++|+.+|.+++. ..|....+++.+|.++...|+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR---LNRNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHcCC
Confidence 5555555556655555554 223455667888888889999999999999999887 446677889999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001357 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416 (1093)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~l 416 (1093)
+++|+.+|++++...|.+..++..++.++...|++++|..++++++...|+++.+...+
T Consensus 191 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988776543
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=4.2e-18 Score=187.48 Aligned_cols=254 Identities=11% Similarity=0.077 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHH-hCCCChHHHHHHHHHHHHH
Q 001357 145 EQASSAFKIVLEADRDNVPALLGQACVEFN-------RGRY-------SDSLEFYKRALQ-VHPSCPGAIRLGIGLCRYK 209 (1093)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~-------~g~~-------~~Al~~~~~al~-~~p~~~~~~~~~la~~~~~ 209 (1093)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+.+|++++. .+|++ ..+|+.+|.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~-~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN-MLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHh
Confidence 789999999999999999999999998874 5886 899999999999 69988 7789999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCChHHH
Q 001357 210 LGQLGKARQAFQRALQLDPENVE-ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF-TGQHFLV 287 (1093)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A 287 (1093)
.|++++|+..|++++.+.|.++. +|..++.++...|+ +++|+..|.+++...|....++...+.+.+. .|+++.|
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG---IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC---HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999886 89999999999888 9999999999999999887777666655443 6888888
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-CchhhHHHHHHHHHHcCCHHHHHHHHH
Q 001357 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH-EFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1093)
Q Consensus 288 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1093)
..+|++++... |..+.+|..++..+...|++++|+.+|++++.....+| .....|..++..+...|+++.|..++.
T Consensus 189 ~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 189 FKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888765 55678888888888888888888888888887322233 356677888888888888888888888
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001357 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417 (1093)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la 417 (1093)
++++..|++...... +.+. ...+++.+.|.++..+..||
T Consensus 266 ~a~~~~p~~~~~~~~-~~~~-----------~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 266 RRFTAFREEYEGKET-ALLV-----------DRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp HHHHHTTTTTSSCHH-HHHH-----------TTTCBTTBCSSCHHHHHTTT
T ss_pred HHHHHcccccccchH-HHHH-----------HHHHhcccCCCCHHHHHhcC
Confidence 888888875433211 1111 11144566788887776655
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.80 E-value=7.1e-18 Score=170.07 Aligned_cols=168 Identities=21% Similarity=0.248 Sum_probs=155.6
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 205 (1093)
.++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.. ..++..+|.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-AEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-HHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999 778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH
Q 001357 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1093)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1093)
++...++++.|...+.+++.++|.+..++..+|.++...|+ +++|+..|+++++++|.++.++..+|.+|...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE---HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC---chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999 999999999999999999988888888888888888
Q ss_pred HHHHHHHHHHhc
Q 001357 286 LVEQLTETALAV 297 (1093)
Q Consensus 286 ~A~~~~~~al~~ 297 (1093)
+|+..++++++.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 888888877754
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.79 E-value=2e-17 Score=188.52 Aligned_cols=191 Identities=13% Similarity=0.095 Sum_probs=96.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhccCCC---CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----chhhH
Q 001357 273 YLANHFFFTGQHFLVEQLTETALAVTNHG---PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE----FIFPY 345 (1093)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~ 345 (1093)
.+|.+++..|++++|+..+.+++...... +..+.+++.+|.+|...|+++.|+.+|.+++...+..+. ...++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 35556666666666666666665442221 223455666666666666666666666666554332221 23345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHH
Q 001357 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAK-----ID-PRDAQAF 413 (1093)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~l~-----~~-p~~~~~~ 413 (1093)
..+|.++...|++++|+.+|.+++...+.. ..++..+|.+|...|++++|+.+|++++. .+ |..+.++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 555555555556666655555555543211 13455555555555555555555555555 23 4444455
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 001357 414 IDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463 (1093)
Q Consensus 414 ~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~ 463 (1093)
..+|.++ ..|++++|+.++++++.+.+..+.+.....+..+|.++...|+
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 5555555 5555555555555555544433222112223344444444444
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.79 E-value=4e-18 Score=199.27 Aligned_cols=223 Identities=16% Similarity=0.137 Sum_probs=172.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY-SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1093)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~-~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 220 (1093)
+.+++|+..+..+....|.++.+++.+|.++...|+| ++|+.+|++++..+|.+ ..+++.+|.+|+..|++++|+.+|
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-VEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4578888899988888999999999999999999999 99999999999999999 788999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHh---------hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 221 QRALQLDPENVEALVALAVMDLQA---------NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1093)
Q Consensus 221 ~~al~~~p~~~~a~~~la~~~~~~---------~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1093)
++++.++|+ ..++..+|.++... |+ +++|+..|++++.++|.++.+++.+|.+|...
T Consensus 161 ~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------- 226 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH---VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL---------- 226 (474)
T ss_dssp HHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----------
Confidence 999999998 79999999999998 77 99999999999999998886666655555433
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC---CchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH---EFIFPYYGLGQVQLKLGDFRSALTNFEKV 368 (1093)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 368 (1093)
++..+. ..|++++|+.+|.+++.. .| ....+++.+|.+|...|++++|+..|+++
T Consensus 227 ----------------~~~~~~---~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 227 ----------------YFNTGQ---NPKISQQALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp ----------------HHHTTC---CHHHHHHHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------HHhhcc---ccchHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 000000 014566666666666652 34 55666666666666666666666666666
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (1093)
Q Consensus 369 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 401 (1093)
+..+|++..++..++.++...|++++|+..+.+
T Consensus 285 l~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 285 AALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666666666666666666666655443
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.78 E-value=6.8e-15 Score=175.80 Aligned_cols=230 Identities=7% Similarity=-0.052 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhh
Q 001357 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI-ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 620 (1093)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 620 (1093)
.....+|++++..+|.++..|+..+..+...|+..+|. .+|++++...|.+..+|..++.+....|+++.|..+|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999997 99999999999999999999999999999999999999998
Q ss_pred hcC-----------CCC----------ChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhh-CCCCHHHH
Q 001357 621 DAT-----------DGK----------DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-HTSNLYAA 678 (1093)
Q Consensus 621 ~~~-----------~~~----------d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~a~ 678 (1093)
... |.. ....++..+.+ .... +..+.|..+|.++++. .+.....+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~-erR~------------~~l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT-MKRI------------QGLAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH-HHHH------------HCHHHHHHHHHHHHHTGGGSCTHHH
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhcCCCChHHH
Confidence 752 211 11223332322 2222 7789999999999987 33344555
Q ss_pred HHHHHHHHhcC-CchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-HHHHHHH
Q 001357 679 NGAGVVLAEKG-QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 756 (1093)
Q Consensus 679 ~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~l 756 (1093)
...+.+....+ +++.|..+|+.+++..| .++..|..++......|+.+.|..+|++++...+.+.. ..+|...
T Consensus 473 i~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-----~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~ 547 (679)
T 4e6h_A 473 LENAYIEYHISKDTKTACKVLELGLKYFA-----TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV 547 (679)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 56666666655 59999999999999998 77889989999999999999999999999998653323 6777788
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCCcchhhH
Q 001357 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 789 (1093)
Q Consensus 757 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 789 (1093)
...-...|+.+.+.++++++....|+++.+...
T Consensus 548 ~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 548 IFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 888888999999999999999999998654433
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.78 E-value=1.2e-17 Score=190.29 Aligned_cols=247 Identities=14% Similarity=0.102 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------c
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINK---PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-------N 375 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~ 375 (1093)
..++.+|..+...|++++|+.+|.+++..... .+....+++.+|.++...|+++.|+.++.+++...+. .
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 35666999999999999999999999975432 2335678999999999999999999999999987433 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC-CCC
Q 001357 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE-EVP 447 (1093)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~-~~~ 447 (1093)
..++..+|.+|...|++++|+.+|.+++.+.+.. ..++.++|.++ ..|++++|+.++++++.+.+.... +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 4689999999999999999999999999875432 35899999999 999999999999999998877655 555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHH
Q 001357 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1093)
Q Consensus 448 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 527 (1093)
+.++.++|.++...|++++|+.+|++++...... .++.....
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------------------~~~~~~~~ 305 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA--------------------------------------GDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------------------------TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--------------------------------------CCHHHHHH
Confidence 7899999999999999999999999999853211 12333344
Q ss_pred HHHHHHHHHhcCC---hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 001357 528 LFNLARLLEQIHD---TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 591 (1093)
Q Consensus 528 ~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 591 (1093)
+..++.++...|+ +.+|+.++++. ...|....++..+|.++...|++++|..++++++.+...
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 6778999999999 77777777765 333455678889999999999999999999999887643
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.77 E-value=1.3e-16 Score=167.08 Aligned_cols=216 Identities=15% Similarity=0.179 Sum_probs=114.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHP-SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
++.+++.+|.+++..|+|++|+..|++++..+| .+ ..+++.+|.++..+|++++|+..|++++..+|++..++..+|.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD-SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC-cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 445555555555555555555555555555554 33 3444445555555555555555555555555555555555555
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcC
Q 001357 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319 (1093)
Q Consensus 240 ~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 319 (1093)
++...|+ +.+|+..|++++..+|.++..+..++ .+++.+|.++...|
T Consensus 85 ~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~------------------------------~~~~~~g~~~~~~~ 131 (228)
T 4i17_A 85 AYRDMKN---NQEYIATLTEGIKAVPGNATIEKLYA------------------------------IYYLKEGQKFQQAG 131 (228)
T ss_dssp HHHHTTC---HHHHHHHHHHHHHHSTTCHHHHHHHH------------------------------HHHHHHHHHHHHTT
T ss_pred HHHHccc---HHHHHHHHHHHHHHCCCcHHHHHHHH------------------------------HHHHHHhHHHHHhc
Confidence 5555555 55555555555555555553322211 23444455555555
Q ss_pred CHHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001357 320 DYEKAGLYYMASVKEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (1093)
Q Consensus 320 ~~~~A~~~~~~al~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1093)
++++|+..|.+++. ..|. ...+++.+|.++...| ...++++..+.+.....+ .+......+.+++|+.
T Consensus 132 ~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~ 201 (228)
T 4i17_A 132 NIEKAEENYKHATD---VTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVD 201 (228)
T ss_dssp CHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh---cCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHH
Confidence 55555555555554 3445 4555555665554433 223344444443333222 2223334455666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH
Q 001357 398 LLRKAAKIDPRDAQAFIDLGELL 420 (1093)
Q Consensus 398 ~l~~~l~~~p~~~~~~~~la~~~ 420 (1093)
+|+++++++|++..+...++.+.
T Consensus 202 ~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 202 YLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCHHHHHHHHHHH
Confidence 66666666666666666555543
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.77 E-value=3.1e-17 Score=171.80 Aligned_cols=207 Identities=12% Similarity=0.121 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM-HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 84 ~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
..+..+|.+|+..|+.. +|+..|++++..+| .+..+++.+|.++...|++++|+..|++++..+|+++
T Consensus 8 ~~~~~~g~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYA-----------VAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp HHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH
T ss_pred HHHHHHHHHHHHccCHH-----------HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH
Confidence 57788899999888877 99999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-------AIRLGIGLCRYKLGQLGKARQAFQRALQLDPE--NVEA 233 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a 233 (1093)
.+++.+|.++...|++++|+..|++++..+|++ . .+++.+|.++..+|++++|+..|+++++++|+ ++.+
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN-ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence 999999999999999999999999999999998 4 56899999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 001357 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313 (1093)
Q Consensus 234 ~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 313 (1093)
+..+|.++...|. ..+.++..+.+.....+ .+......+.+++|+.++++++... |.+..+...++.
T Consensus 156 ~~~l~~~~~~~~~--------~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~---p~~~~~~~~l~~ 222 (228)
T 4i17_A 156 LYSLGVLFYNNGA--------DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLS---PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcC---CCCHHHHHHHHH
Confidence 9999999988765 23444455544443322 2333445566677777777777654 444555555555
Q ss_pred HH
Q 001357 314 SY 315 (1093)
Q Consensus 314 ~~ 315 (1093)
+.
T Consensus 223 i~ 224 (228)
T 4i17_A 223 VK 224 (228)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.76 E-value=3.1e-17 Score=175.83 Aligned_cols=219 Identities=20% Similarity=0.224 Sum_probs=156.6
Q ss_pred HhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--
Q 001357 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-- 195 (1093)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-- 195 (1093)
...+|.++..++.+|..++..|++++|+..|++++..+|.+ +.+++.+|.+++..|+|++|+..|++++...|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34578888889999999999999999999999999988888 8888999999999999999999999999988865
Q ss_pred hHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001357 196 PGAIRLGIGLCRYK--------LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 196 ~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
...+++.+|.++.. +|++++|+..|++++..+|++..+...+..+....+.
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~--------------------- 146 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK--------------------- 146 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH---------------------
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH---------------------
Confidence 25567888888888 8888888888888888888776554433322211111
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHH
Q 001357 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1093)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1093)
....++.+|.+|...|++++|+..|.+++...+..+....+++.
T Consensus 147 ------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 190 (261)
T 3qky_A 147 ------------------------------------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVG 190 (261)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 01235566666667777777777777776655444445566777
Q ss_pred HHHHHHHc----------CCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHH
Q 001357 348 LGQVQLKL----------GDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQ 396 (1093)
Q Consensus 348 la~~~~~~----------g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~ 396 (1093)
+|.+|... |++++|+..|++++..+|+++ .+...++.++...++++.+.
T Consensus 191 l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 191 AMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 77777655 777777777777777777763 45566666666666655443
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.75 E-value=3.1e-17 Score=198.70 Aligned_cols=171 Identities=18% Similarity=0.242 Sum_probs=162.1
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 001357 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1093)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1093)
..|+++.++..+|.++..+|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++ ..+++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~-~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-ADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999 788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001357 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1093)
+|.++..+|++++|+..|+++++++|++..++..+|.++...|+ +++|+..|+++++++|+++.++..++.++...|
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN---IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhc
Q 001357 283 QHFLVEQLTETALAV 297 (1093)
Q Consensus 283 ~~~~A~~~~~~al~~ 297 (1093)
++++|...+++++..
T Consensus 160 ~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 160 DWTDYDERMKKLVSI 174 (723)
T ss_dssp CCTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 999988888887753
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.75 E-value=2.6e-17 Score=199.32 Aligned_cols=174 Identities=19% Similarity=0.191 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001357 79 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158 (1093)
Q Consensus 79 ~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 158 (1093)
.|+...+++.||.+|..+|+.+ +|+..|+++++++|+++.+++.+|.+|...|++++|+..|+++++++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~-----------eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~ 73 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIE-----------EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4467889999999999999888 99999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
|+++.+++.+|.++..+|++++|+..|+++++++|++ ..+++.+|.+|..+|++++|+..|+++++++|++..++..+|
T Consensus 74 P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~ 152 (723)
T 4gyw_A 74 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152 (723)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhh
Confidence 9999999999999999999999999999999999999 788999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001357 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
.++...|+ +.+|+..+++++++.|+.
T Consensus 153 ~~l~~~g~---~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 153 HCLQIVCD---WTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHTTC---CTTHHHHHHHHHHHHHHH
T ss_pred hHHHhccc---HHHHHHHHHHHHHhChhH
Confidence 99999999 999999999998876543
No 72
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.3e-17 Score=184.04 Aligned_cols=402 Identities=13% Similarity=0.099 Sum_probs=192.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219 (1093)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (1093)
..|++++|..+++++ +++.+|..+|.++...|++++|+..|.++ .+ ...+..++.++...|++++|+.+
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D-~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DD-PSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CC-HHHHHHHHHHHHhCCCHHHHHHH
Confidence 345555555555554 22335555555555555555555555442 11 22345555555555555555555
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC
Q 001357 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (1093)
Q Consensus 220 ~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 299 (1093)
++.+.+..+ ++.+...++.+|.+.|+ +.++..++. .| +..++..+|..++..|.|++|..+|..+
T Consensus 84 l~~ark~~~-~~~i~~~Li~~Y~Klg~---l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 84 LQMARKKAR-ESYVETELIFALAKTNR---LAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp --------------------------C---HHHHTTTTT-----CC-----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHhCc-cchhHHHHHHHHHHhCC---HHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 555554322 24444555555555555 444444442 12 2346777777777777777777777754
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001357 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379 (1093)
Q Consensus 300 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 379 (1093)
..|..+|.++..+|+|++|+..|.++. .+.+|..++.++...|+++.|..+...+. .+| .-.
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~a---d~l 210 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHA---DEL 210 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCH---HHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCH---hhH
Confidence 367888999999999999999998872 35678888899999999999987776533 444 345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 001357 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI---SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 456 (1093)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~ 456 (1093)
..++.+|.+.|++++|+.++++++.+++.+..++..++.+|. .++..+.++.|...+.+.+-........+|..+..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 568888999999999999999999999999999999999883 34444555555444443331000012567888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHH
Q 001357 457 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 536 (1093)
Q Consensus 457 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 536 (1093)
+|...++++.|+..........- +...|.+-+ ..+.++.+++.....|.
T Consensus 291 ly~~~~e~d~A~~tm~~h~~~a~-----------------------~~~~f~~~~--------~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 291 LYDKYEEYDNAIITMMNHPTDAW-----------------------KEGQFKDII--------TKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHTTCHHHHHHHHHHSTTTTC-----------------------CHHHHHHHH--------HHCSSTHHHHHHHHHHH
T ss_pred HHHhhchHHHHHHHHHhCChhhh-----------------------hhHHHHHHH--------hchhHHHHHHHHHHHHH
Confidence 99999999999887655432110 000011111 23457788888777777
Q ss_pred hcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHH
Q 001357 537 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 616 (1093)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 616 (1093)
+....++..+..++...-+. .+...++.+.|+..-...++..+.. -++..+--.+-.+|....+++. +
T Consensus 340 --~~~p~~l~~ll~~l~~~ld~----~r~v~~~~~~~~l~l~~~yl~~v~~--~n~~~vnealn~l~ieeed~~~----l 407 (449)
T 1b89_A 340 --EFKPLLLNDLLMVLSPRLDH----TRAVNYFSKVKQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQA----L 407 (449)
T ss_dssp --HHCGGGHHHHHHHHGGGCCH----HHHHHHHHHTTCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHH----H
T ss_pred --hcCHHHHHHHHHHHHhccCc----HHHHHHHHHcCCcHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhhhHHH----H
Confidence 44555666666666322221 2344556777888878778766543 3456666777888888888854 4
Q ss_pred HHhhhcCCCCCh
Q 001357 617 RAASDATDGKDS 628 (1093)
Q Consensus 617 ~~~l~~~~~~d~ 628 (1093)
+..+.....-|.
T Consensus 408 r~si~~~~nfd~ 419 (449)
T 1b89_A 408 RTSIDAYDNFDN 419 (449)
T ss_dssp HHHHHHCCCSCH
T ss_pred HHHHHHhcCcCH
Confidence 445554444343
No 73
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.74 E-value=1.7e-16 Score=170.07 Aligned_cols=213 Identities=15% Similarity=0.206 Sum_probs=172.9
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--
Q 001357 155 LEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN-- 230 (1093)
Q Consensus 155 l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 230 (1093)
....|.++..++.+|..++..|+|++|+..|++++..+|.++ ..+++.+|.+++.+|++++|+..|++++...|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 345788999999999999999999999999999999999873 5678999999999999999999999999998854
Q ss_pred -HHHHHHHHHHHHH--------hhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC
Q 001357 231 -VEALVALAVMDLQ--------ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301 (1093)
Q Consensus 231 -~~a~~~la~~~~~--------~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 301 (1093)
..+++.+|.++.. .|+ +.+|+..|.+++..+|+++.+...+.
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~a~~-------------------------- 138 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTD---TRKAIEAFQLFIDRYPNHELVDDATQ-------------------------- 138 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHH---HHHHHHHHHHHHHHCTTCTTHHHHHH--------------------------
T ss_pred hHHHHHHHHHHHHHhcccccccchh---HHHHHHHHHHHHHHCcCchhHHHHHH--------------------------
Confidence 6788999999998 777 99999999999999987763321111
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHH
Q 001357 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCET 378 (1093)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~ 378 (1093)
.+ .... ......++.+|.+|...|++++|+..|++++..+|+ .+.+
T Consensus 139 -----------~~--------------~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a 187 (261)
T 3qky_A 139 -----------KI--------------RELR------AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDA 187 (261)
T ss_dssp -----------HH--------------HHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred -----------HH--------------HHHH------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHH
Confidence 00 0000 011234788999999999999999999999999998 5679
Q ss_pred HHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH-hcCCHHH
Q 001357 379 LKALGHIYVQL----------GQIEKAQELLRKAAKIDPRDA---QAFIDLGELL-ISSDTGA 427 (1093)
Q Consensus 379 ~~~la~~~~~~----------g~~~~A~~~l~~~l~~~p~~~---~~~~~la~~~-~~~~~~~ 427 (1093)
++.+|.+|... |++++|+..|++++...|+++ .+...++.++ ..++++.
T Consensus 188 ~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 188 LVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999977 899999999999999999985 4555666666 5555544
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.73 E-value=2.2e-16 Score=179.57 Aligned_cols=240 Identities=15% Similarity=0.091 Sum_probs=197.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CH
Q 001357 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIY---P---DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR-------DA 410 (1093)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p---~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~-------~~ 410 (1093)
.++.+|..+...|++++|+.+|.+++... + ....++..+|.+|...|+++.|+.++.+++.+.+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 46778999999999999999999998763 2 24578999999999999999999999999986432 25
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccccc
Q 001357 411 QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 488 (1093)
Q Consensus 411 ~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 488 (1093)
.++..+|.++ ..|++++|+.+|.+++.+.+..+... ...+++++|.+|...|++++|+.+|++++......
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~------- 255 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK------- 255 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------
Confidence 6788999999 99999999999999999887653322 25788999999999999999999999999842110
Q ss_pred chhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-----cCChHHHHH
Q 001357 489 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-----YQDYVDAYL 563 (1093)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~ 563 (1093)
..|....+++++|.++...|++++|+.++++++.. +|.....+.
T Consensus 256 -------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 304 (378)
T 3q15_A 256 -------------------------------VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL 304 (378)
T ss_dssp -------------------------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHH
T ss_pred -------------------------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23456789999999999999999999999999997 445566777
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhc
Q 001357 564 RLAAIAKARNN---LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (1093)
Q Consensus 564 ~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 622 (1093)
.++.++...++ +.+|+.++++. ...|....++..+|.+|...|++++|...|++++..
T Consensus 305 ~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 305 FLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88888888888 77788777762 223344557889999999999999999999998764
No 75
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.72 E-value=2.9e-15 Score=160.99 Aligned_cols=220 Identities=10% Similarity=0.032 Sum_probs=183.7
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CChHHHH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG--EVEQASSAFKIVLEADRDNVPALLGQACVE----FNR---GRYSDSL 182 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~----~~~---g~~~~Al 182 (1093)
+|+.++++++.++|.+..+|+.++.++...| .+++++.++..++..+|.+..+|..++.++ ... +++.+++
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL 130 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF 130 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence 8999999999999999999999999999999 999999999999999999999999999999 777 8999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh---HHhHHHHHHHH
Q 001357 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG--KARQAFQRALQLDPENVEALVALAVMDLQANE---AAGIRKGMEKM 257 (1093)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~---~~~~~~Al~~~ 257 (1093)
.++.+++..+|.+ ..+|...+.++..+|.++ +++..+.++++.+|.|..+|...+.+....+. ...+.+++.++
T Consensus 131 ~~~~~~l~~~pkn-y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 131 DILEAMLSSDPKN-HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 9999999999999 788999999999999998 99999999999999999999999999887754 23488999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCChHH-HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001357 258 QRAFEIYPYCAMALNYLANHFFFTGQHFL-VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1093)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1093)
.+++..+|.+..+|+.++.++...|.... +..++.+++......+..+.++..++.+|...|+.++|+.+|..+.
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999999999999999888888887544 4445555443321223444555555555555555555555555544
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=182.53 Aligned_cols=248 Identities=16% Similarity=0.124 Sum_probs=195.9
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--------cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--
Q 001357 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-- 589 (1093)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 589 (1093)
..|....+++.+|.++...|++++|+.+|.+++.. .|....++..+|.++...|++++|+.++.+++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999984 56778899999999999999999999999999884
Q ss_pred ------CCChhHHHHhhhhhhcccchHHHHHHHHHhhhcC-----C--CCChHHHHHhHhHHHHHHHhhcccCchHHHHH
Q 001357 590 ------GKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-----D--GKDSYATLSLGNWNYFAALRNEKRAPKLEATH 656 (1093)
Q Consensus 590 ------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-----~--~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~ 656 (1093)
|....++..+|.++...|++++|+..|.+++... + .....++..+|.+ |... |+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~------------~~ 168 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL-CQNQ------------GK 168 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTT------------TC
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-HHHc------------CC
Confidence 5556789999999999999999999999999863 2 1244577788888 8887 99
Q ss_pred HHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcC----CCCCCchhHHHHH----
Q 001357 657 LEKAKELYTRVIVQ--------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG----SVFVQMPDVWINL---- 720 (1093)
Q Consensus 657 ~~~A~~~~~~~l~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~~~~~~l---- 720 (1093)
+++|+.+|++++.. .|....++..+|.++...|++++|+.+|+++++..+. ...+.....+..+
T Consensus 169 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (311)
T 3nf1_A 169 YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEERE 248 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Confidence 99999999999998 7778889999999999999999999999999987542 1111223333333
Q ss_pred --HHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001357 721 --AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1093)
Q Consensus 721 --g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~ 782 (1093)
+..+...+.+.+|+..+..++.. .+..+.++..+|.+|...|++++|..+|++++.+.|.
T Consensus 249 ~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 249 ECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 44455567777778888887765 3445889999999999999999999999999998875
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=181.62 Aligned_cols=252 Identities=21% Similarity=0.170 Sum_probs=174.8
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--
Q 001357 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH-- 192 (1093)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-- 192 (1093)
.+|....+++.+|.+++..|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35667788999999999999999999999999984 56678889999999999999999999999999873
Q ss_pred ---CCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 001357 193 ---PSC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLD--------PENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1093)
Q Consensus 193 ---p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~ 259 (1093)
++. ...++..+|.++...|++++|+..|.+++.+. |....++..+|.++...|+ +.+|+..|.+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~ 178 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK---YEEVEYYYQR 178 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC---HHHHHHHHHH
Confidence 222 26678899999999999999999999998873 4556677788888888877 8888888888
Q ss_pred HHHh--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC------CCCchHHHHHHHHHHHhcCCHHHHH
Q 001357 260 AFEI--------YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH------GPTKSHSYYNLARSYHSKGDYEKAG 325 (1093)
Q Consensus 260 al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~ 325 (1093)
++.. .|....++..++.++...|++++|+.++.+++..... .+.....+.
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---------------- 242 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM---------------- 242 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH----------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH----------------
Confidence 8776 4555555666666666666666666666655532100 000000000
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1093)
Q Consensus 326 ~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 405 (1093)
....+..++..+...+.+.+|+..+..+....|....++..+|.+|...|++++|+.+|++++.+
T Consensus 243 ---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 243 ---------------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ---------------HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11223334445556667777777888888777878888888888888888888888888888887
Q ss_pred CCC
Q 001357 406 DPR 408 (1093)
Q Consensus 406 ~p~ 408 (1093)
.|.
T Consensus 308 ~~~ 310 (311)
T 3nf1_A 308 RKQ 310 (311)
T ss_dssp HC-
T ss_pred hhc
Confidence 664
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.72 E-value=2.7e-15 Score=170.40 Aligned_cols=193 Identities=14% Similarity=0.082 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCC---CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----chh
Q 001357 271 LNYLANHFFFTGQHFLVEQLTETALAVTNH---GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE----FIF 343 (1093)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~ 343 (1093)
++.+|..++..|++++|+..+.+++..... .+..+.+++.+|.+|...|+++.|+.++.+++...+..+. ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 344555555566666666666555543322 1223445555555555555665555555555553332221 233
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHH
Q 001357 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYP---D---NCETLKALGHIYVQLGQIEKAQELLRKAAK-----IDPRDAQA 412 (1093)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~---~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-----~~p~~~~~ 412 (1093)
++..+|.++...|++++|+.+|.+++...+ + ...++..+|.+|...|++++|+.+|.+++. .+|....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 445555555555555555555555554321 1 123444555555555555555555555554 33444444
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 001357 413 FIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463 (1093)
Q Consensus 413 ~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~ 463 (1093)
+..+|.++ ..|++++|+.++++++.+.+..+.......+..++.++...|+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 44455444 4455555555555544443333222222333344444444444
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.70 E-value=4.5e-15 Score=168.41 Aligned_cols=278 Identities=14% Similarity=0.062 Sum_probs=163.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-----HH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-----GA 198 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~-----~~ 198 (1093)
.++..+|.+++..|++++|+..+++++...|.+. .++..+|.++...|++++|+..+.+++...|... ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3456678888888888888888888888776542 2567778888888888888888888887654431 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHH
Q 001357 199 IRLGIGLCRYKLGQLGKARQAFQRALQLD--------PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1093)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1093)
++..+|.++...|++++|+..|.+++.+. |....++..+|.++...|+ +++|+..+.+++...+...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~-- 169 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR---LDEAEASARSGIEVLSSYQ-- 169 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTTSC--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHhhccC--
Confidence 35677888888888888888888877753 2234455566666666666 6666666666666554310
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc--hhhH--H
Q 001357 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF--IFPY--Y 346 (1093)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~--~ 346 (1093)
.+....++..+|.++...|++++|..++.+++......... .... .
T Consensus 170 ------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 170 ------------------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp ------------------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred ------------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 01122344445555555555555555555554432211111 0111 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHH
Q 001357 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR------DAQAFIDL 416 (1093)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~------~~~~~~~l 416 (1093)
.++.++...|++++|..++.+++...|.. ...+..++.++...|++++|...+++++...+. ...++..+
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 23334555555555555555555443321 223455566666666666666666665544221 12355556
Q ss_pred HHHH-hcCCHHHHHHHHHHHHHHHHh
Q 001357 417 GELL-ISSDTGAALDAFKTARTLLKK 441 (1093)
Q Consensus 417 a~~~-~~~~~~~A~~~~~~a~~~~~~ 441 (1093)
+.++ ..|++++|...+.+++.+.+.
T Consensus 300 a~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 6666 666666666666666666554
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.70 E-value=5.1e-15 Score=167.94 Aligned_cols=290 Identities=15% Similarity=0.083 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG----AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
.++..+|.+++..|++++|+..+++++...|.... .++..+|.++...|+++.|+..|.+++.+.|.....+
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 90 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH---- 90 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH----
Confidence 45677788888888888888888888888775532 2466778888888888888888888877644221100
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC---C--CCCchHHHHHHHH
Q 001357 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN---H--GPTKSHSYYNLAR 313 (1093)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~--~~~~~~~~~~la~ 313 (1093)
....++..++.++...|++++|+.++..++.... . .+....++..+|.
T Consensus 91 ---------------------------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 143 (373)
T 1hz4_A 91 ---------------------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 143 (373)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHH
Confidence 0012233444555555555555555555543321 1 1345567888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCC--CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c-HHHH----HHHHH
Q 001357 314 SYHSKGDYEKAGLYYMASVKEINK--PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD--N-CETL----KALGH 384 (1093)
Q Consensus 314 ~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~-~~~~----~~la~ 384 (1093)
++...|++++|..++.+++...+. ++....++..+|.++...|++++|+.++++++...+. . .... ..++.
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 223 (373)
T 1hz4_A 144 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 223 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 999999999999999999876543 2235567889999999999999999999999876322 2 1211 13456
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHH
Q 001357 385 IYVQLGQIEKAQELLRKAAKIDPRD----AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIH 458 (1093)
Q Consensus 385 ~~~~~g~~~~A~~~l~~~l~~~p~~----~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~ 458 (1093)
++...|++++|..++.+++...|.. ...+..++.++ ..|++++|...+..++...+..+.... ..++..++.++
T Consensus 224 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~ 303 (373)
T 1hz4_A 224 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 303 (373)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 6889999999999999998776543 34567888999 999999999999999998776443222 36889999999
Q ss_pred HHcCCHHHHHHHHHHHHhcchhhhh
Q 001357 459 FEKGEFESAHQSFKDALGDGIWLTL 483 (1093)
Q Consensus 459 ~~~g~~~~A~~~~~~al~~~~~~~~ 483 (1093)
...|++++|...|.+++........
T Consensus 304 ~~~g~~~~A~~~l~~al~~~~~~g~ 328 (373)
T 1hz4_A 304 WQAGRKSDAQRVLLDALKLANRTGF 328 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhCCHHHHHHHHHHHHHHhccccH
Confidence 9999999999999999987654433
No 81
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=3.3e-16 Score=172.73 Aligned_cols=361 Identities=14% Similarity=0.096 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHH
Q 001357 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1093)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1093)
.+|..+|..+...|++.+|+..|.++ .+...+..++.++...|++++|+.++..+.+. .++ +.+...+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~---~~~-~~i~~~L 100 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARE-SYVETEL 100 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---Ccc-chhHHHH
Confidence 35555555555555555555555432 12346666666777777777777777776652 112 3445667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHH
Q 001357 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGA 427 (1093)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~ 427 (1093)
+.+|.+.|++.++..++. .| +..++..+|..+...|++++|..+|.++ ..|..++.++ ..|++++
T Consensus 101 i~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 101 IFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQA 166 (449)
T ss_dssp --------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHH
Confidence 777777788777776664 23 3457788888888888888888888765 3577778877 8888888
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001357 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (1093)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1093)
|+..+.++. .+.+|..++.++...|+++.|..+.....
T Consensus 167 AVea~~KA~----------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-------------------------------- 204 (449)
T 1b89_A 167 AVDGARKAN----------STRTWKEVCFACVDGKEFRLAQMCGLHIV-------------------------------- 204 (449)
T ss_dssp HHHHHHHHT----------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT--------------------------------
T ss_pred HHHHHHHcC----------CchhHHHHHHHHHHcCcHHHHHHHHHHHH--------------------------------
Confidence 888877761 36777888888888888888855443211
Q ss_pred hhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 001357 508 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR--NNLQLSIELVNEA 585 (1093)
Q Consensus 508 ~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~a 585 (1093)
..|+. ...++.+|.+.|.+++|+.+++.++..++.....+..++.++.+- ++..+.++.|...
T Consensus 205 ------------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ 269 (449)
T 1b89_A 205 ------------VHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 269 (449)
T ss_dssp ------------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred ------------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 22322 335777788888888888888888888888888888888777644 4666677777766
Q ss_pred HHHcC-----CChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCC-----------CChHHHHHhHhHHHHHHHhhcccC
Q 001357 586 LKVNG-----KYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-----------KDSYATLSLGNWNYFAALRNEKRA 649 (1093)
Q Consensus 586 l~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-----------~d~~~~~~l~~~~y~~~~~~~~~~ 649 (1093)
+.+.| .++.+|..+..+|...++|+.|..+.-......-. .+...+...... |.
T Consensus 270 ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~f-yl--------- 339 (449)
T 1b89_A 270 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQF-YL--------- 339 (449)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHH-HH---------
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHH-HH---------
Confidence 66667 77888889999999999999888765543221111 112222222322 22
Q ss_pred chHHHHHHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHh
Q 001357 650 PKLEATHLEKAKELYTRVI--VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 727 (1093)
Q Consensus 650 ~~~~~~~~~~A~~~~~~~l--~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~ 727 (1093)
+....++..+..++ .++| .....++...|++.-...++..+... ++..|--.+-.+|...
T Consensus 340 -----~~~p~~l~~ll~~l~~~ld~------~r~v~~~~~~~~l~l~~~yl~~v~~~-------n~~~vnealn~l~iee 401 (449)
T 1b89_A 340 -----EFKPLLLNDLLMVLSPRLDH------TRAVNYFSKVKQLPLVKPYLRSVQNH-------NNKSVNESLNNLFITE 401 (449)
T ss_dssp -----HHCGGGHHHHHHHHGGGCCH------HHHHHHHHHTTCTTTTHHHHHHHHTT-------CCHHHHHHHHHHHHHT
T ss_pred -----hcCHHHHHHHHHHHHhccCc------HHHHHHHHHcCCcHHHHHHHHHHHHh-------hHHHHHHHHHHHHHhh
Confidence 22334455555555 2332 23345567788888888888777654 4667777788889998
Q ss_pred cCHHHHHHHHHHHHHhh
Q 001357 728 GNFALAMKMYQNCLRKF 744 (1093)
Q Consensus 728 g~~~~A~~~~~~al~~~ 744 (1093)
.+|.. ++..+..|
T Consensus 402 ed~~~----lr~si~~~ 414 (449)
T 1b89_A 402 EDYQA----LRTSIDAY 414 (449)
T ss_dssp TCHHH----HHHHHHHC
T ss_pred hhHHH----HHHHHHHh
Confidence 88864 34445544
No 82
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.69 E-value=4.9e-15 Score=159.13 Aligned_cols=242 Identities=10% Similarity=-0.026 Sum_probs=186.0
Q ss_pred HHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCChHHHHHHHHHHH----HHc-
Q 001357 139 LAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRG--RYSDSLEFYKRALQVHPSCPGAIRLGIGLCR----YKL- 210 (1093)
Q Consensus 139 ~~~g~-~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g--~~~~Al~~~~~al~~~p~~~~~~~~~la~~~----~~~- 210 (1093)
...|. .++|+.++..++..+|++..+|..++.++...| .+++++.++..++..+|.+ ..+|...+.++ ..+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-YQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-HHHHHHHHHHHHHHHHhcc
Confidence 34444 468999999999999999999999999999999 9999999999999999999 67788888888 777
Q ss_pred --CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 001357 211 --GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR--KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1093)
Q Consensus 211 --g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~--~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1093)
+++++++.++.+++..+|.|..+|...+.+....+. +. +++..+.+++..+|.+..+|...+.++...+...
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~---~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~- 197 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDL---HNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA- 197 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC-
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc-
Confidence 789999999999999999999999999999988887 77 8999999999999999888877776665554300
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHH-HHHHH
Q 001357 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS-ALTNF 365 (1093)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~ 365 (1093)
....+++++.++.+++. ..|.+..+|+.++.++...|+... ...++
T Consensus 198 ------------------------------~~~~~~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 198 ------------------------------TDNTIDEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred ------------------------------hhhhHHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 00015566666666665 456666667666666666666444 33455
Q ss_pred HHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Q 001357 366 EKVLEIY---PDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPRDAQAFIDLGE 418 (1093)
Q Consensus 366 ~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-~~p~~~~~~~~la~ 418 (1093)
.+++... |.++.++..++.+|...|+.++|+++|+.+.. .+|.....|...+.
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 5555544 66677777777777777777777777777775 57777666665544
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.69 E-value=1e-16 Score=155.05 Aligned_cols=139 Identities=12% Similarity=0.010 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
.+++++|+..|.+++..+|.++..++.+|.+|+..|+|++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 89 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYR 89 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 45566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA-FQRALQLDPENVEALVALAVMDLQANE 246 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1093)
+++.++|++ +.+++.+|.++..+|++++|... ++++++++|+++.++..++.++...|+
T Consensus 90 ~al~~~p~~-~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 90 RSVELNPTQ-KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999 77899999999999999877765 589999999999999988888877664
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.67 E-value=3.6e-15 Score=149.80 Aligned_cols=172 Identities=17% Similarity=0.212 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001357 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1093)
Q Consensus 82 ~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1093)
...++..+|.+|...|+.. +|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++...|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 75 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYS-----------QAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN 75 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHH-----------HHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 4556777787777777666 88888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1093)
+.++..+|.++...|++++|+.+|++++...|.+ ..+++.+|.++...|++++|+..|.+++...|.++.++..+|.++
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 154 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 8888888888888888888888888888888887 677888888888888888888888888888888888888888888
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 242 LQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
...|+ +++|+..+.+++..+|.+.
T Consensus 155 ~~~~~---~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 155 EQMGR---HEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHTTC---HHHHHHHHHHHHHHHHCCC
T ss_pred HHcCC---HHHHHHHHHHHHHcCCCch
Confidence 88888 8888888888888777654
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.67 E-value=8.8e-17 Score=155.46 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=133.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001357 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1093)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1093)
+|.++...|++++|+..|++++..+|.++.+++.+|.+|+..|+|++|+..|++++..+|++ +.+++.+|.++..+|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-PKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCch
Confidence 67888889999999999999999999999999999999999999999999999999999999 78899999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHH-HHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001357 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEK-MQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1093)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1093)
++|+..|+++++++|+++.+++.+|.++...|+ +.+|... ++++++++|+++.++..++.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDV---TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS---SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999998 8777765 589999999999999888888877774
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.66 E-value=8.3e-16 Score=187.85 Aligned_cols=200 Identities=11% Similarity=-0.016 Sum_probs=172.8
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001357 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL--------EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1093)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--------~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1093)
..+|.++.+++..| +..|++++|+..|++++ ..+|++..+++.+|.++...|++++|+..|++++..+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 56888888888777 78899999999999999 88999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHH
Q 001357 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1093)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1093)
++ ..+++.+|.++..+|++++|+..|+++++++|++..+++.+|.++...|+ +++ +..|+++++++|.++.+++.
T Consensus 465 ~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~---~~~-~~~~~~al~~~P~~~~a~~~ 539 (681)
T 2pzi_A 465 WR-WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN---TDE-HKFYQTVWSTNDGVISAAFG 539 (681)
T ss_dssp CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC---CCT-TCHHHHHHHHCTTCHHHHHH
T ss_pred ch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---hHH-HHHHHHHHHhCCchHHHHHH
Confidence 99 78899999999999999999999999999999999999999999999999 999 99999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 001357 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA-GLYYMASV 332 (1093)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al 332 (1093)
+|.++...|++++|+..+++++.. .|....+++.+|.++...+..+++ ...+..++
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPPT---SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCTT---STTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhhccc---CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 999999999999999999888754 467778888888888776663333 33333333
No 87
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.66 E-value=1.9e-15 Score=155.32 Aligned_cols=167 Identities=17% Similarity=0.103 Sum_probs=121.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG----------------QACVEFNRGRYSDSLEFYKRALQ 190 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~----------------la~~~~~~g~~~~Al~~~~~al~ 190 (1093)
++..++..|..++..|++++|+.+|++++..+|+++.+++. +|.++...|++++|+..|++++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999999999998 88888888888888888888888
Q ss_pred hCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHH
Q 001357 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1093)
Q Consensus 191 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1093)
.+|++ ..+++.+|.++..+|++++|+..|+++++++|+++.+++.+|.++...+. .....+...+.+++...|. ..+
T Consensus 83 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~a 159 (208)
T 3urz_A 83 KAPNN-VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE-QEKKKLETDYKKLSSPTKM-QYA 159 (208)
T ss_dssp HCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHC---CCCHH-HHH
T ss_pred HCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCCCch-hHH
Confidence 88888 67788888888888888888888888888888888888888888766654 1144555566555432221 123
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 001357 271 LNYLANHFFFTGQHFLVEQLTETALA 296 (1093)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~ 296 (1093)
++.+|..+...|++++|+..+++++.
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.66 E-value=2.9e-15 Score=163.21 Aligned_cols=256 Identities=14% Similarity=0.084 Sum_probs=167.8
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHc--C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAK--G-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~--g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1093)
+|..++.++-+.-+.....| .++.. + ++++|+.+|.++ |.++...|+|++|+..|.++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 46666777766655433222 12232 2 488999998887 45678889999999999999
Q ss_pred HHhCCC-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHh-hhHHhHHHHHHH
Q 001357 189 LQVHPS-----CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEALVALAVMDLQA-NEAAGIRKGMEK 256 (1093)
Q Consensus 189 l~~~p~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~-~~~~~~~~Al~~ 256 (1093)
+.+.+. ....++..+|.+|..+|++++|+.+|++++.+.|.. ..++..+|.++... |+ +++|+..
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~---~~~A~~~ 140 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD---YAKAIDC 140 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC---HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC---HHHHHHH
Confidence 887432 225678889999999999999999999998876532 34556666666664 66 6666666
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 001357 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 336 (1093)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 336 (1093)
|++++.+.|... .......++..+|.++..+|++++|+.+|++++...+
T Consensus 141 ~~~Al~~~~~~~-------------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 141 YELAGEWYAQDQ-------------------------------SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp HHHHHHHHHHTT-------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCC-------------------------------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 666666554221 0001134567777788888888888888888777443
Q ss_pred CCCCc----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHh
Q 001357 337 KPHEF----IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE-----TLKALGHIYV--QLGQIEKAQELLRKAAKI 405 (1093)
Q Consensus 337 ~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~l~~~l~~ 405 (1093)
..+.. ..+++.+|.++...|++++|+.+|++++.++|.... .+..++..+. ..+++.+|+..|++++.+
T Consensus 190 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 33221 125677888888888888888888888887776543 2344555554 346788888888888777
Q ss_pred CCCCHHHHHHHHHHH
Q 001357 406 DPRDAQAFIDLGELL 420 (1093)
Q Consensus 406 ~p~~~~~~~~la~~~ 420 (1093)
+|....++..+-..+
T Consensus 270 ~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 270 DKWKITILNKIKESI 284 (292)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 777666666555544
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.65 E-value=5.7e-15 Score=154.02 Aligned_cols=207 Identities=14% Similarity=0.184 Sum_probs=134.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--HHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRL 201 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~ 201 (1093)
.+..++.+|..++..|++++|+..|++++...|.+ ..+++.+|.+++..|+|++|+..|++++..+|++.. .+++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45678889999999999999999999999988876 468899999999999999999999999999998732 3678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1093)
.+|.++..+|.. ....+..++.++...|+ +++|+..|++++..+|+++.+...+..+
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~P~~~~a~~a~~~l---- 139 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQ---ARAAFSDFSKLVRGYPNSQYTTDATKRL---- 139 (225)
T ss_dssp HHHHHHHHHHC------------------------------CCHH---HHHHHHHHHHHHTTCTTCTTHHHHHHHH----
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCcHH---HHHHHHHHHHHHHHCcCChhHHHHHHHH----
Confidence 888888776532 11223445555555666 8889999998888888876544322111
Q ss_pred CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHH
Q 001357 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1093)
Q Consensus 282 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1093)
+.+.. .+ ....+.+|.+|...|++.+|
T Consensus 140 ------------------------------~~~~~--------------~~---------~~~~~~~a~~~~~~~~~~~A 166 (225)
T 2yhc_A 140 ------------------------------VFLKD--------------RL---------AKYEYSVAEYYTERGAWVAV 166 (225)
T ss_dssp ------------------------------HHHHH--------------HH---------HHHHHHHHHHHHHHTCHHHH
T ss_pred ------------------------------HHHHH--------------HH---------HHHHHHHHHHHHHcCcHHHH
Confidence 10000 00 01123455666666666666
Q ss_pred HHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001357 362 LTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1093)
Q Consensus 362 ~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~ 409 (1093)
+..|+++++.+|+++ .++..+|.+|...|++++|+..++.+....|++
T Consensus 167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 666666666666554 456666666666666666666666665555543
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.65 E-value=3.1e-15 Score=162.92 Aligned_cols=242 Identities=14% Similarity=0.100 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--C-ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 146 QASSAFKIVLEADRDNVPALLGQACVEFNR--G-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222 (1093)
Q Consensus 146 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~--g-~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 222 (1093)
+|..++.++-+.-+.....+ .++.. + ++++|+..|.++ |.+|..+|++++|+.+|.+
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 46677777777665532222 12232 2 488888888776 5567788999999999988
Q ss_pred HHhhCCC------cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 001357 223 ALQLDPE------NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296 (1093)
Q Consensus 223 al~~~p~------~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 296 (1093)
++.+.+. ...++..+|.++...|+ +++|+.+|.+++.+.|.. |++.
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~~~~--------------g~~~----------- 114 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGN---SVNAVDSLENAIQIFTHR--------------GQFR----------- 114 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHT--------------TCHH-----------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHc--------------CCHH-----------
Confidence 8887432 24567777777777777 777777777777654321 2211
Q ss_pred ccCCCCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001357 297 VTNHGPTKSHSYYNLARSYHSK-GDYEKAGLYYMASVKEINKPHE---FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372 (1093)
Q Consensus 297 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 372 (1093)
..+.++..+|.+|... |++++|+.+|++++...+.... ...++..+|.++...|++++|+.+|++++...
T Consensus 115 ------~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 115 ------RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp ------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 1235788899999996 9999999999999986543222 24678999999999999999999999999998
Q ss_pred CCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHH---hcCCHHHHHHHHHHHHH
Q 001357 373 PDNCE-------TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA-----FIDLGELL---ISSDTGAALDAFKTART 437 (1093)
Q Consensus 373 p~~~~-------~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~-----~~~la~~~---~~~~~~~A~~~~~~a~~ 437 (1093)
|.+.. ++..+|.++...|++++|+..|++++.++|..... +..++..+ ..+++.+|+..|.+++.
T Consensus 189 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 87543 67899999999999999999999999999886553 44455555 34678999999888766
Q ss_pred HHHh
Q 001357 438 LLKK 441 (1093)
Q Consensus 438 ~~~~ 441 (1093)
+.|.
T Consensus 269 l~~~ 272 (292)
T 1qqe_A 269 LDKW 272 (292)
T ss_dssp CCHH
T ss_pred cHHH
Confidence 6554
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.65 E-value=7.8e-15 Score=147.34 Aligned_cols=167 Identities=17% Similarity=0.150 Sum_probs=145.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
...++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.+|++++...|.+ ..++..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN-VKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999888 67788899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHH
Q 001357 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1093)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1093)
...|++++|+..|.+++..+|.+..++..+|.++...|+ +++|+..+.+++...|.++.++..++.++...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR---FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc---HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999998888 89999999999988888887777777777777777777
Q ss_pred HHHHHHHHhcc
Q 001357 288 EQLTETALAVT 298 (1093)
Q Consensus 288 ~~~~~~al~~~ 298 (1093)
..++..++...
T Consensus 164 ~~~~~~~~~~~ 174 (186)
T 3as5_A 164 LPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 77777766544
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.65 E-value=5.2e-15 Score=152.04 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=108.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHH----------------HHHHHHHhchhhhh
Q 001357 39 PLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNA----------------LGVYYTYLGKIETK 102 (1093)
Q Consensus 39 ~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~----------------la~~y~~~g~~~~~ 102 (1093)
+.+.++..|..++..|++++|+..|++++...|. ...++.. +|.+|..+|+..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-- 71 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID---------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYD-- 71 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH---------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHH--
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHH--
Confidence 5678999999999999999999999999876442 3334444 666666555544
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHH
Q 001357 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--YSD 180 (1093)
Q Consensus 103 ~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--~~~ 180 (1093)
+|+..|++++.++|.++.+++.+|.++...|++++|+.+|++++..+|+++.+++.+|.+++..|. ...
T Consensus 72 ---------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 72 ---------KAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp ---------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666655543 334
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001357 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (1093)
Q Consensus 181 Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1093)
+...|.+++. |......++.+|.++..+|++++|+..|+++++++|+
T Consensus 143 ~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 143 LETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4455555432 2222234555666666666666666666666666664
No 93
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.64 E-value=2.3e-15 Score=140.28 Aligned_cols=121 Identities=18% Similarity=0.221 Sum_probs=112.0
Q ss_pred HHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Q 001357 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1093)
Q Consensus 119 ~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1093)
++..++|..+..+..+|..++..|+|++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++.++|++ ..
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~ 82 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IK 82 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001357 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1093)
+++.+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 899999999999999999999999999999999999888765
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.64 E-value=3e-15 Score=182.95 Aligned_cols=173 Identities=13% Similarity=0.045 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHH--------hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 001357 107 EEHFILATQYYNKAS--------RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~--------~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 178 (1093)
.+++.+|+..|++++ ..+|.+..+++.+|.+++..|++++|+..|++++..+|++..+++.+|.++...|++
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 456779999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 001357 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1093)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~ 258 (1093)
++|+..|++++..+|++ ..+++.+|.++..+|++++ +..|+++++++|++..+++.+|.++...|+ +++|+..|+
T Consensus 484 ~~A~~~~~~al~l~P~~-~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~ 558 (681)
T 2pzi_A 484 DSATKHFTEVLDTFPGE-LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD---RVGAVRTLD 558 (681)
T ss_dssp HHHHHHHHHHHHHSTTC-SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC---HHHHHHHHH
Confidence 99999999999999999 7789999999999999999 999999999999999999999999999999 999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCh
Q 001357 259 RAFEIYPYCAMALNYLANHFFFTGQH 284 (1093)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1093)
++++++|.+..++..++.+++..+..
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC-----
T ss_pred hhcccCcccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999887763
No 95
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.63 E-value=2.4e-13 Score=146.53 Aligned_cols=167 Identities=11% Similarity=-0.007 Sum_probs=151.8
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--YS 179 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--~~ 179 (1093)
+|+.++++++.++|.+..+|..++.++...|. +++++.++..++..+|.+..+|..++.++...|. +.
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~ 127 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 127 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHH
Confidence 79999999999999999999999999988776 7899999999999999999999999999999994 89
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh-----------H
Q 001357 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ-LGKARQAFQRALQLDPENVEALVALAVMDLQANE-----------A 247 (1093)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~-----------~ 247 (1093)
+++.++.+++..+|.+ ..+|...+.++...|. +++++.++.+++..+|.|..+|..++.+...... .
T Consensus 128 ~EL~~~~k~l~~dprN-y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~ 206 (331)
T 3dss_A 128 RELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 206 (331)
T ss_dssp HHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCH
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccch
Confidence 9999999999999999 7789999999999999 6999999999999999999999999998887621 1
Q ss_pred HhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001357 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1093)
Q Consensus 248 ~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1093)
+.+.+++.++.+++..+|++..+|+.+..++.
T Consensus 207 ~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 207 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34899999999999999999988876655443
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.63 E-value=2.4e-14 Score=149.22 Aligned_cols=205 Identities=12% Similarity=0.096 Sum_probs=147.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---HHH
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE---ALV 235 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~ 235 (1093)
++.+++.+|..++..|+|++|+..|++++...|.++ ..+++.+|.+++.+|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 466788888888889999999999999988888763 357888888888888888888888888888888754 667
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 001357 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315 (1093)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 315 (1093)
.+|.++...+. . . ...+..++..+
T Consensus 83 ~~g~~~~~~~~---~-----~------------------------------------------------~~~~~~~~~~~ 106 (225)
T 2yhc_A 83 MRGLTNMALDD---S-----A------------------------------------------------LQGFFGVDRSD 106 (225)
T ss_dssp HHHHHHHHHHC---------------------------------------------------------------------
T ss_pred HHHHHHHhhhh---h-----h------------------------------------------------hhhhhccchhh
Confidence 77777665542 0 0 01233455566
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 001357 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 395 (1093)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 395 (1093)
...|++++|+..|.+++...|..+....+...++.+.. ........+|.+|...|++.+|
T Consensus 107 ~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~--------------------~~~~~~~~~a~~~~~~~~~~~A 166 (225)
T 2yhc_A 107 RDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD--------------------RLAKYEYSVAEYYTERGAWVAV 166 (225)
T ss_dssp -CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHTCHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCcHHHH
Confidence 67788999999999998854433332222222222221 1123446789999999999999
Q ss_pred HHHHHHHHHhCCCCH---HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh
Q 001357 396 QELLRKAAKIDPRDA---QAFIDLGELL-ISSDTGAALDAFKTARTLLKK 441 (1093)
Q Consensus 396 ~~~l~~~l~~~p~~~---~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~ 441 (1093)
+..|++++...|+++ .++..++.++ ..|++++|+..++.+....|.
T Consensus 167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 999999999999986 6799999999 999999999999987765443
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.62 E-value=5.7e-15 Score=159.80 Aligned_cols=153 Identities=17% Similarity=0.170 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCC
Q 001357 107 EEHFILATQYYNKASRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------DRDNVPALLGQACVEFNRGR 177 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~ 177 (1093)
...|.+|+..+.++...+ |..+.++..+|.++...|++++|+.+|.+++.. .|....++..+|.++...|+
T Consensus 21 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 21 VPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence 455667777777766544 667889999999999999999999999999977 35567889999999999999
Q ss_pred hHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHH
Q 001357 178 YSDSLEFYKRALQVH--------PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL--------DPENVEALVALAVMD 241 (1093)
Q Consensus 178 ~~~Al~~~~~al~~~--------p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~ 241 (1093)
+++|+.+|.+++... |.. ..++..+|.++..+|++++|+..|++++.+ .|....++..+|.++
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 179 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDV-AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY 179 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999872 333 677889999999999999999999999988 666778888899999
Q ss_pred HHhhhHHhHHHHHHHHHHHHHh
Q 001357 242 LQANEAAGIRKGMEKMQRAFEI 263 (1093)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~ 263 (1093)
...|+ +++|+..|.+++..
T Consensus 180 ~~~g~---~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 180 LKQGK---YQDAETLYKEILTR 198 (283)
T ss_dssp HHHTC---HHHHHHHHHHHHHH
T ss_pred HHcCC---HHHHHHHHHHHHHH
Confidence 99888 88999999888876
No 98
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.60 E-value=2.1e-14 Score=155.32 Aligned_cols=212 Identities=18% Similarity=0.220 Sum_probs=153.2
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----
Q 001357 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---- 335 (1093)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---- 335 (1093)
|....++..+|.+++..|++++|+.++.+++... ...+....++..+|.+|...|++++|+.+|.+++...
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 4455666666666666666666666666666543 3345666788888888888999999999888888743
Q ss_pred -CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 001357 336 -NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI- 405 (1093)
Q Consensus 336 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~- 405 (1093)
+..|....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++..
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 234667788899999999999999999999999988 6667788999999999999999999999999876
Q ss_pred --------CCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 406 --------DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE--VPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (1093)
Q Consensus 406 --------~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 474 (1093)
.+.....+..++..+ ..+....+ ..+..+.......... ....++..+|.+|...|++++|+.+|+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRDS-APYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566777777766 43333322 2333343333332221 12578899999999999999999999999
Q ss_pred Hhc
Q 001357 475 LGD 477 (1093)
Q Consensus 475 l~~ 477 (1093)
+..
T Consensus 279 l~~ 281 (283)
T 3edt_B 279 SRN 281 (283)
T ss_dssp HTT
T ss_pred HHh
Confidence 873
No 99
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.59 E-value=5.2e-13 Score=144.34 Aligned_cols=172 Identities=12% Similarity=0.065 Sum_probs=160.2
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-ChHHHHHHHHHH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNR-G-RYSDSLEFYKRA 188 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-g-~~~~Al~~~~~a 188 (1093)
+|+.++++++.++|.+..+|..++.++...| .+++++.++..++..+|.+..+|..++.++... + ++.+++.++.++
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 151 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS 151 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 7999999999999999999999999999999 599999999999999999999999999999998 8 999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh----HHhHHHHHHH
Q 001357 189 LQVHPSCPGAIRLGIGLCRYKLGQLG--------KARQAFQRALQLDPENVEALVALAVMDLQANE----AAGIRKGMEK 256 (1093)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~----~~~~~~Al~~ 256 (1093)
+..+|.+ ..+|...+.++..+|.++ +++..+.++++.+|.|..+|...+.+....+. ...+.+++.+
T Consensus 152 L~~dpkN-y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~ 230 (349)
T 3q7a_A 152 LLPDPKN-YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIY 230 (349)
T ss_dssp TSSCTTC-HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHH
T ss_pred HHhCCCC-HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 9999999 778999999999998888 99999999999999999999999999887763 2347899999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 001357 257 MQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1093)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1093)
+.+++..+|.+..+|+.+..++...|..
T Consensus 231 ~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 231 ILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998888877764
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.59 E-value=7.8e-15 Score=140.77 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
.+-..|.+++.++|.++.+++.+|.+++..|++++|+..|++++..+|.++.+|+.+|.++...|+|++|+..|++++.+
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 001357 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1093)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1093)
+|++ +.+++.+|.||..+|++++|+..|++++.+.|+..
T Consensus 100 ~P~~-~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 100 GKND-YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSSC-CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999 77899999999999999999999999999999865
No 101
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.59 E-value=4.5e-13 Score=144.40 Aligned_cols=253 Identities=13% Similarity=0.005 Sum_probs=193.7
Q ss_pred HHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 139 LAKGEVE-QASSAFKIVLEADRDNVPALLGQACVEFNRGR----------YSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 139 ~~~g~~~-~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~----------~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
...|.+. +|+.++..++..+|.+..+|...+.++...+. +.+++.++..++..+|.+ ..+|...+.++
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn-y~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-YGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 3556654 89999999999999999999999999988776 789999999999999999 77899999999
Q ss_pred HHcCC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH
Q 001357 208 YKLGQ--LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1093)
Q Consensus 208 ~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1093)
..+|. +++++.++.+++..+|.|..+|...+.+....|.. +.+++.++.+++..+|.+..+|...+.++...+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~--~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA--PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 99994 89999999999999999999999999998888751 489999999999999999999999888876653311
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHc----------
Q 001357 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL---------- 355 (1093)
Q Consensus 286 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~---------- 355 (1093)
.+ +. .+ -...+.+++++.++.+++. ..|.+..+|+.+..++...
T Consensus 197 ~~--------------~~-------~~--~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~ 250 (331)
T 3dss_A 197 DS--------------GP-------QG--RLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEK 250 (331)
T ss_dssp -----------------------------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHH
T ss_pred cc--------------cc-------cc--ccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHH
Confidence 00 00 00 0001335667777777776 4566666665554444444
Q ss_pred -CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001357 356 -GDFRSALTNFEKVLEIYPDNCETLKALGHIYV---QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1093)
Q Consensus 356 -g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~ 420 (1093)
+.+++++.++.+++...|++.-.+..++.+.. ..+..++...++.++++++|....-|..+..-+
T Consensus 251 ~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 251 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 45788888888888888888655544444332 246777888888888888888777766665543
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.58 E-value=1.4e-14 Score=144.49 Aligned_cols=167 Identities=13% Similarity=0.077 Sum_probs=132.6
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1093)
+|.....++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++...| + +.++..+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~-~~~~~~~ 79 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D-NSYKSLI 79 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C-hHHHHHH
Confidence 4556677889999999999999999999999999999999999999999999999999999999999999 6 4445444
Q ss_pred HHHH-HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHH
Q 001357 204 GLCR-YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC--AMALNYLANHFFF 280 (1093)
Q Consensus 204 a~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~--~~~~~~la~~~~~ 280 (1093)
+.+. ...+....|+..|++++..+|+++.+++.+|.++...|+ +++|+..|.+++..+|.. +.++..++.++..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR---DEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 5442 233344567888888888899888888889988888888 888888888888888764 4467777777777
Q ss_pred cCChHHHHHHHHHHH
Q 001357 281 TGQHFLVEQLTETAL 295 (1093)
Q Consensus 281 ~g~~~~A~~~~~~al 295 (1093)
.|++++|...|.+++
T Consensus 157 ~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 157 LGQGNAIASKYRRQL 171 (176)
T ss_dssp HCSSCHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHH
Confidence 777777776666655
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.57 E-value=1.5e-14 Score=144.35 Aligned_cols=171 Identities=11% Similarity=0.057 Sum_probs=133.9
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhH
Q 001357 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 635 (1093)
Q Consensus 556 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~ 635 (1093)
|.....++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...| ++.....++
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~ 80 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIA 80 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHH
Confidence 344456677788888888888888888888888888888888888888888888888888888887776 333333333
Q ss_pred hHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchh
Q 001357 636 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 715 (1093)
Q Consensus 636 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 715 (1093)
.+.+... +....|+..|++++..+|+++.+++.+|.++...|++++|+..|++++...|+. ..+.
T Consensus 81 ~~~~~~~------------~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~ 145 (176)
T 2r5s_A 81 KLELHQQ------------AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA---QDGE 145 (176)
T ss_dssp HHHHHHH------------HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT---TTTH
T ss_pred HHHHHhh------------cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---ChHH
Confidence 3311111 223357899999999999999999999999999999999999999999988732 2466
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 716 VWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 716 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
++.++|.++..+|++++|+..|++++..
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 9999999999999999999999998864
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.57 E-value=6.2e-14 Score=151.93 Aligned_cols=168 Identities=11% Similarity=-0.023 Sum_probs=155.4
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001357 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1093)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 204 (1093)
|.++..++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+. ...++..+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-RYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH-HHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch-HHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999965 66677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcC
Q 001357 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC--AMALNYLANHFFFTG 282 (1093)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~--~~~~~~la~~~~~~g 282 (1093)
..+...++...|+..|++++..+|+++.+++.+|.++...|+ +++|+..|.+++..+|++ ..++..++.++...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~---~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR---NEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 889999999999999999999999999999999999999999 999999999999999988 778888888888888
Q ss_pred ChHHHHHHHHHHHh
Q 001357 283 QHFLVEQLTETALA 296 (1093)
Q Consensus 283 ~~~~A~~~~~~al~ 296 (1093)
+.++|...+++++.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 88888888877663
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.57 E-value=2.6e-14 Score=133.06 Aligned_cols=120 Identities=16% Similarity=0.227 Sum_probs=113.0
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 001357 154 VLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1093)
Q Consensus 154 al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1093)
+..++|+.+.++..+|..+++.|+|++|+..|++++..+|.+ +.+++.+|.|+..+|++++|+..|+++++++|+++.+
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 345789999999999999999999999999999999999999 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001357 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (1093)
Q Consensus 234 ~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~ 277 (1093)
|+.+|.++...|+ +++|+..|+++++++|+++.++..++.+
T Consensus 84 ~~~lg~~~~~~~~---~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 84 YIRKAACLVAMRE---WSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999 9999999999999999999988887765
No 106
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.55 E-value=8.5e-13 Score=142.68 Aligned_cols=245 Identities=11% Similarity=-0.047 Sum_probs=205.6
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHcCCChhHHHH
Q 001357 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSM 598 (1093)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 598 (1093)
..+....++..+..+....+..++|+.++.+++..+|++..+|+..+.++...| .+++++.++..++..+|.+..+|..
T Consensus 49 y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~h 128 (349)
T 3q7a_A 49 YSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHH 128 (349)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 445556666777777777788889999999999999999999999999999999 5999999999999999999999999
Q ss_pred hhhhhhcc-c-chHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHH--------HHHHHHHHHH
Q 001357 599 LGDLELKN-D-DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE--------KAKELYTRVI 668 (1093)
Q Consensus 599 l~~~~~~~-g-~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~--------~A~~~~~~~l 668 (1093)
.++++... + ++++++..+.+++...|. +..++...+.+ .... +.++ ++++++.+++
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wv-l~~l------------~~~~~~~~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWL-YSHF------------STLGRISEAQWGSELDWCNEML 194 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHH-HHHH------------HHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHh------------ccccccchhhHHHHHHHHHHHH
Confidence 99999888 7 899999999999999887 78888888877 6666 5555 9999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcCC-------chhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHH---------
Q 001357 669 VQHTSNLYAANGAGVVLAEKGQ-------FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL--------- 732 (1093)
Q Consensus 669 ~~~p~~~~a~~~la~~~~~~g~-------~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~--------- 732 (1093)
+.+|.|..+|+..+.++...+. +++++.++.+++...| .+..+|+.+..++...|+...
T Consensus 195 ~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-----~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~ 269 (349)
T 3q7a_A 195 RVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-----HNVSAWNYLRGFLKHFSLPLVPILPAILPY 269 (349)
T ss_dssp HHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCCSGGGHHHHGGG
T ss_pred HhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCCCccccccccccc
Confidence 9999999999999999999887 6899999999999998 889999999999988776410
Q ss_pred -------HH-HHHHHHHHhhcC-------CCCHHHHHHHHHHHHhhccHHHHHHHHHHHH-HhCCCC
Q 001357 733 -------AM-KMYQNCLRKFYY-------NTDAQILLYLARTHYEAEQWQDCKKSLLRAI-HLAPSN 783 (1093)
Q Consensus 733 -------A~-~~~~~al~~~~~-------~~~~~~l~~la~~~~~~g~~~~A~~~~~~al-~~~P~~ 783 (1093)
.. ..-+.|+..... ...+.++..|+.+|...|+..+|.++|+.+. +.+|-.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir 336 (349)
T 3q7a_A 270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR 336 (349)
T ss_dssp TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence 11 222222322222 2458899999999999999999999999987 567754
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.53 E-value=1.1e-13 Score=166.46 Aligned_cols=164 Identities=17% Similarity=0.126 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1093)
+++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|+..|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh---hhHHhHHHHHHHHHHHHHhC
Q 001357 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA---NEAAGIRKGMEKMQRAFEIY 264 (1093)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---~~~~~~~~Al~~~~~al~~~ 264 (1093)
++..+|++ ..+++.+|.++..+|++++|+..|+++++++|++..++..++.++... |+ +++|+..|++++..+
T Consensus 83 al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~---~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 83 ASDAAPEH-PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA---LDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT---HHHHHHHHHHHHHHT
T ss_pred HHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHhcC
Confidence 99999999 788999999999999999999999999999999999999999999999 66 999999999999999
Q ss_pred CCcHHHHHHHH
Q 001357 265 PYCAMALNYLA 275 (1093)
Q Consensus 265 p~~~~~~~~la 275 (1093)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99877666554
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.52 E-value=3.9e-13 Score=145.64 Aligned_cols=173 Identities=9% Similarity=0.034 Sum_probs=155.7
Q ss_pred hcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHH
Q 001357 554 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 633 (1093)
Q Consensus 554 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~ 633 (1093)
..|.....++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...|. ..+..+.
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~ 190 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLV 190 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHH
Confidence 348999999999999999999999999999999999999999999999999999999999999999998884 4444444
Q ss_pred hHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCc
Q 001357 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713 (1093)
Q Consensus 634 l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 713 (1093)
.+.. +... +....|+..|++++..+|+++.+++.+|.++...|++++|+..|.+++...|+. ..
T Consensus 191 ~~~~-l~~~------------~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~---~~ 254 (287)
T 3qou_A 191 AQIE-LLXQ------------AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA---AD 254 (287)
T ss_dssp HHHH-HHHH------------HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG---GG
T ss_pred HHHH-HHhh------------cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc---cc
Confidence 4444 5555 778889999999999999999999999999999999999999999999999832 23
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 714 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
+.++.++|.+|...|+.++|+..|++++..
T Consensus 255 ~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 255 GQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp GHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 889999999999999999999999999864
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.51 E-value=6.9e-14 Score=134.51 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001357 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1093)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1093)
+-..|.+++.++|.++.+++.+|.+++..|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++..+
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
|++ +.+++.+|.++..+|++++|+..|++++.++|+++...
T Consensus 86 p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 86 IXE-PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 999 77899999999999999999999999999999876553
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.49 E-value=5.7e-14 Score=134.71 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=110.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001357 149 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 149 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
..|++++..+|+++.+++.+|.+++..|+|++|+..|++++..+|.+ +.+|+.+|.++..+|++++|+.+|++++.++|
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-VDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 45677788899999999999999999999999999999999999999 78899999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 229 ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 229 ~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
+++.+++.+|.++...|+ +++|+..|++++.+.|+.+
T Consensus 102 ~~~~~~~~lg~~~~~lg~---~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKA---PLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCCHH
T ss_pred CCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999 9999999999999999876
No 111
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.49 E-value=8.2e-15 Score=162.68 Aligned_cols=183 Identities=19% Similarity=0.238 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHH----HHhcCCCChhhHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001357 108 EHFILATQYYNK----ASRIDMHEPSTWVGKGQLLL------------AKGEVEQASSAFKIVLEADRDNVPALLGQACV 171 (1093)
Q Consensus 108 ~~~~~A~~~~~~----a~~~~p~~~~~~~~~a~~~~------------~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 171 (1093)
+.|++|+..+.. ++.+.|.. +|..+|.... ..+++++|+..|+.++...|.++.++..+|.+
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~ 156 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV 156 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 356689999999 88888876 4444554432 45678889999999998899999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCh--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 001357 172 EFNRGRYSDSLEFYKRALQVHPSCP--------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1093)
Q Consensus 172 ~~~~g~~~~Al~~~~~al~~~p~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1093)
++..|+|++|+..|++++...|.+. ..+++.+|.|+..+|++++|+..|.+++.++|+++.+++.+
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 236 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRR 236 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999999999999999984 57899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHH-HHHHHHHH
Q 001357 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV-EQLTETAL 295 (1093)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al 295 (1093)
|.++...|+ +++|+..|++++.++|.+..++..++.++...|+++++ ...+..++
T Consensus 237 g~~~~~~g~---~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 237 GEAHLAVND---FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999999999999998888887 44555554
No 112
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.48 E-value=1.9e-13 Score=130.59 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=113.2
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001357 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1093)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1093)
-..|.+++..+|.+...++.+|.+++..|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++..+|
T Consensus 4 ~~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 4 GGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp -----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred chhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001357 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1093)
++ +.+++.+|.++..+|++++|+..|++++.++|+++........+
T Consensus 84 ~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 84 NE-PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp TC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99 77899999999999999999999999999999887665544443
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.48 E-value=1.5e-12 Score=142.64 Aligned_cols=230 Identities=14% Similarity=0.100 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA-KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1093)
.+++.+|..++.++.+..+.. ++. .++++.|..+|.++ +.++...|+|++|+..|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 467779999999998876642 122 58999999999876 56788899999999999
Q ss_pred HHHHHhCCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhhhHHhHHHHH
Q 001357 186 KRALQVHPSC-----PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE------NVEALVALAVMDLQANEAAGIRKGM 254 (1093)
Q Consensus 186 ~~al~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~~~~~~~~~Al 254 (1093)
.+++...+.. ...++..+|.+|..+|++++|+.+|++++.+.+. ...++..+|.++.. |+ +++|+
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~---~~~A~ 135 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD---LSKAV 135 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC---HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC---HHHHH
Confidence 9999886432 2456788999999999999999999999887432 13456666766666 66 77777
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001357 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334 (1093)
Q Consensus 255 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 334 (1093)
..|++++.+.|... + ......++..+|.+|...|+|++|+.+|.+++..
T Consensus 136 ~~~~~Al~~~~~~~--------------~-----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 136 HLYQQAAAVFENEE--------------R-----------------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHTT--------------C-----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--------------C-----------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777766544210 0 0112356778888888888888888888888875
Q ss_pred cCCCCC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCCHHHHHH
Q 001357 335 INKPHE---FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-----ETLKALGHIYVQLGQIEKAQE 397 (1093)
Q Consensus 335 ~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~ 397 (1093)
.+..+. ...+++.+|.++...|++++|+.+|++++ .+|... ..+..++..+ ..++.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 432222 23467888888888899999999999998 887543 2344555544 5667655544
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.48 E-value=4.1e-13 Score=147.22 Aligned_cols=166 Identities=13% Similarity=0.096 Sum_probs=107.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhH
Q 001357 421 ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 499 (1093)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1093)
..|++++|+..|.+++.+.+..+... ...++.++|.+|...|++++|+.+|++++.+....
T Consensus 48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~------------------ 109 (307)
T 2ifu_A 48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN------------------ 109 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT------------------
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc------------------
Confidence 55566666666666665555432211 13566677777777777777777777776632100
Q ss_pred HHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHHcC
Q 001357 500 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARN 573 (1093)
Q Consensus 500 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g 573 (1093)
........++.++|.+|.. |++++|+.+|++++...|.. ..++..+|.++...|
T Consensus 110 -------------------g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 169 (307)
T 2ifu_A 110 -------------------GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169 (307)
T ss_dssp -------------------TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC
Confidence 0111234566777777777 77777777777777765532 466777777777777
Q ss_pred CHHHHHHHHHHHHHHcCCCh------hHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001357 574 NLQLSIELVNEALKVNGKYP------NALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 574 ~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
++++|+.+|++++.+.|.+. .++..+|.+++..|++++|+..|++++ ..|.
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 77777777777777765432 256667777777788888888888877 6554
No 115
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.47 E-value=3.7e-13 Score=140.59 Aligned_cols=206 Identities=13% Similarity=0.016 Sum_probs=152.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH-------HHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH-----
Q 001357 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL-------AVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----- 268 (1093)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l-------a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~----- 268 (1093)
+..|..+ ..+++..|...|.+++.++|+..++|+.+ +.++...+. ..+++..+++.+.+.|...
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r---~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWY---SRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHH---TGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHH---HHHHHHHHHHHhcCChhhhhhhhc
Confidence 3444444 46777777777777777777777777777 566666665 6667777777777665432
Q ss_pred ----------------HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001357 269 ----------------MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1093)
Q Consensus 269 ----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1093)
.+...++.++...|+|++|..++..++. ..|... ..+.+|.+++..++|++|+.+|..+.
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 3444577888888888888888877664 335666 88888889999999999999888665
Q ss_pred HhcCCCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 333 KEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407 (1093)
Q Consensus 333 ~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p 407 (1093)
. ..+. ...+++.+|.++...|++++|+.+|++++... |. .+.+++.+|.++..+|+.++|...|++++..+|
T Consensus 163 ~---~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 163 K---WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp G---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred c---cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3 1111 13478888999999999999999999887543 44 567888999999999999999999999999999
Q ss_pred CCHHHHHHHHH
Q 001357 408 RDAQAFIDLGE 418 (1093)
Q Consensus 408 ~~~~~~~~la~ 418 (1093)
+ ..++..|..
T Consensus 240 ~-~~~~~aL~~ 249 (282)
T 4f3v_A 240 E-PKVAAALKD 249 (282)
T ss_dssp C-HHHHHHHHC
T ss_pred c-HHHHHHHhC
Confidence 8 766655543
No 116
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.46 E-value=2.4e-13 Score=141.98 Aligned_cols=230 Identities=11% Similarity=0.018 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ-------ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l-------a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1093)
.++..|.-+ ..+++..|...|.+++..+|..+.+|+++ +.++...+++.+++..+++.+.+.|... ..++.
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l-~a~~~ 86 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTL-NARIA 86 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGG-CCEEE
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhh-hhhhc
Confidence 456666665 57888888888888888888888888888 6777777777888888888877777651 11111
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 203 -IGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1093)
Q Consensus 203 -la~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1093)
.|. | |+ +.. --.-..+.+.++.++...|+ +++|...|..++...|.+. +.+.++.+++.
T Consensus 87 ~~g~-y---~~-----------~~~~v~~r~dl~LayA~~L~~~g~---y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~ 147 (282)
T 4f3v_A 87 IGGL-Y---GD-----------ITYPVTSPLAITMGFAACEAAQGN---YADAMEALEAAPVAGSEHL-VAWMKAVVYGA 147 (282)
T ss_dssp CCTT-T---CC-----------CEEECSSHHHHHHHHHHHHHHHTC---HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH
T ss_pred cCCc-c---cc-----------cccccCCHhHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCchH-HHHHHHHHHHH
Confidence 000 0 00 000 00002223334444444444 4444444444444444444 45555555555
Q ss_pred cCChHHHHHHHHHHHhccCCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhHHHHHHHHHHcCCH
Q 001357 281 TGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDF 358 (1093)
Q Consensus 281 ~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~ 358 (1093)
.+++++|+..+..+.... .+. ...+++.+|.++..+|++++|+.+|.+++.. +..|. ...+++.+|.++..+|+.
T Consensus 148 ~~r~~dA~~~l~~a~~~~--d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 148 AERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp TTCHHHHHHHHTTGGGCS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred cCCHHHHHHHHHHhhccC--CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCH
Confidence 555555555555333221 111 1358899999999999999999999999841 11144 567899999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001357 359 RSALTNFEKVLEIYPDNCETLKALGH 384 (1093)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~la~ 384 (1093)
++|...|++++..+|. ..+...|..
T Consensus 225 deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 225 SAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 9999999999999998 777666643
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.44 E-value=3.4e-10 Score=131.69 Aligned_cols=209 Identities=11% Similarity=0.007 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001357 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTART 437 (1093)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~ 437 (1093)
......+|++++...|..+.+|...+..+...|+.+.|..+|++++.. |.+...++..+.....+. . +..+..
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~---~---~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEA---V---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTH---H---HHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhH---H---HHHHHH
Confidence 345678899999999999999999999999999999999999999999 988877776555432221 1 222221
Q ss_pred HH---Hh-----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhh
Q 001357 438 LL---KK-----AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (1093)
Q Consensus 438 ~~---~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1093)
.. .. ........+|...+....+.+..+.|..+|.++ ..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-------------------------------- 314 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-------------------------------- 314 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--------------------------------
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--------------------------------
Confidence 11 00 000001356677777777788899999999998 41
Q ss_pred hhccCCCCcCCCCchHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001357 510 RFENDGNHVELPWNKVTVLFNLARLLEQIH-DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 588 (1093)
Q Consensus 510 ~l~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 588 (1093)
.+....++...|.+....+ +++.|..+|+.++...|+.+..+...+......|+.+.|..+|+++
T Consensus 315 -----------~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~--- 380 (493)
T 2uy1_A 315 -----------EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL--- 380 (493)
T ss_dssp -----------SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS---
T ss_pred -----------CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence 1123445655666655555 6999999999999999998888888888888999999999999987
Q ss_pred cCCChhHHHHhhhhhhcccchHHHHHHHHHhhh
Q 001357 589 NGKYPNALSMLGDLELKNDDWVKAKETFRAASD 621 (1093)
Q Consensus 589 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 621 (1093)
+....+|.....+....|+.+.+...+++++.
T Consensus 381 -~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 381 -EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678888888888889999999998988775
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.44 E-value=1.4e-12 Score=156.85 Aligned_cols=155 Identities=16% Similarity=0.107 Sum_probs=129.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1093)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 220 (1093)
.|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|++ ..+++.+|.++..+|++++|+..|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH-PEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999 788999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CChHHHHHHHHHHHhc
Q 001357 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT---GQHFLVEQLTETALAV 297 (1093)
Q Consensus 221 ~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~ 297 (1093)
+++++++|++..++..+|.++...|+ +++|+..|+++++.+|.++.++..++.++... |++++|...+.+++..
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQ---AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999999999999999999999999 99999999999999999999999999999999 8999999999888876
Q ss_pred cC
Q 001357 298 TN 299 (1093)
Q Consensus 298 ~~ 299 (1093)
.+
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 119
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.44 E-value=4.9e-12 Score=118.99 Aligned_cols=134 Identities=25% Similarity=0.493 Sum_probs=117.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1093)
.+|+.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.+|++++...|.. ..+++.+|.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-hHHHHHHHHHHH
Confidence 4678888899999999999999999998888888888899999999999999999999999888887 667888899999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001357 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1093)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1093)
..|++++|+..|.+++...|.+..++..++.++...|+ +.+|+..+.+++..+|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc---HHHHHHHHHHHHccCCC
Confidence 99999999999999998888888888888888888888 88888888888888775
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.43 E-value=3.8e-13 Score=149.24 Aligned_cols=149 Identities=19% Similarity=0.218 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHc
Q 001357 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------------VPALLGQACVEFNR 175 (1093)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~la~~~~~~ 175 (1093)
.+|+..|.+++..+|.++.++..+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++...
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 209 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 368888888888889999999999999999999999999999999999998 69999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHH-H
Q 001357 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKG-M 254 (1093)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A-l 254 (1093)
|+|++|+..|++++..+|.+ ..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++ +.+| .
T Consensus 210 g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~a~~ 285 (336)
T 1p5q_A 210 QAFSAAIESCNKALELDSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR---QLAREK 285 (336)
T ss_dssp TCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHHHH
Confidence 99999999999999999999 78899999999999999999999999999999999999999999999988 7777 4
Q ss_pred HHHHHHHHh
Q 001357 255 EKMQRAFEI 263 (1093)
Q Consensus 255 ~~~~~al~~ 263 (1093)
..|.+++..
T Consensus 286 ~~~~~~~~~ 294 (336)
T 1p5q_A 286 KLYANMFER 294 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566666643
No 121
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.43 E-value=6.5e-12 Score=118.11 Aligned_cols=134 Identities=27% Similarity=0.519 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001357 85 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 164 (1093)
Q Consensus 85 ~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a 164 (1093)
+++.+|.+|...|+.. +|+.+|.+++..+|.++.+++.+|.++...|++++|+..|++++...|.++.+
T Consensus 3 ~~~~l~~~~~~~~~~~-----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 71 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYD-----------EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCcHH-----------HHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHH
Confidence 4667888888887766 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001357 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1093)
+..+|.++...|++++|+.+|.+++...|.. ..+++.+|.++...|++++|...|.+++..+|.+
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999998 6788999999999999999999999999998863
No 122
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.7e-12 Score=119.65 Aligned_cols=117 Identities=9% Similarity=0.076 Sum_probs=104.2
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001357 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1093)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 204 (1093)
|..+..|+.+|..++..|++++|+..|.+++..+|+++.++..+|.++...|++++|+..|++++..+|.+ ..+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg 79 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKA 79 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHH
Confidence 34466788999999999999999999999999999999999999999999999999999999999999998 77889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHHH
Q 001357 205 LCRYKLGQLGKARQAFQRALQLD------PENVEALVALAVMDL 242 (1093)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~la~~~~ 242 (1093)
.++..+|++++|+..|++++.++ |.+..++..++.+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999 888888777776644
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.42 E-value=5.3e-13 Score=128.25 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001357 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1093)
Q Consensus 147 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 226 (1093)
+-..|++++..+|+++.+++.+|.+++..|+|++|+..|++++..+|.+ +.+++.+|.++..+|++++|+..|.+++.+
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-SRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3456888899999999999999999999999999999999999999999 778999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHH
Q 001357 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1093)
Q Consensus 227 ~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1093)
+|+++.+++.+|.++...|+ +++|+..|.+++.++|.++..
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGE---LAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCCchHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999999 999999999999998877644
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.41 E-value=8.1e-12 Score=128.41 Aligned_cols=174 Identities=10% Similarity=0.052 Sum_probs=132.3
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG----RYSDSLEFYKR 187 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g----~~~~Al~~~~~ 187 (1093)
+|+.+|.++... .++.+++.+|.+|...+++++|+.+|++++.. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 577788888764 67888888888888888888998888888764 578888888888887 6 88888888888
Q ss_pred HHHhCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHH----hhhHHhHHHHHHHH
Q 001357 188 ALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQ----ANEAAGIRKGMEKM 257 (1093)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~----~~~~~~~~~Al~~~ 257 (1093)
++.. .+ +.+++.+|.+|.. .+++.+|+.+|++++...| .++.+++.||.+|.. .++ +.+|+.+|
T Consensus 79 A~~~--g~-~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~ 152 (212)
T 3rjv_A 79 AVEA--GS-KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED---DVKASEYF 152 (212)
T ss_dssp HHHT--TC-HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC---HHHHHHHH
T ss_pred HHHC--CC-HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC---HHHHHHHH
Confidence 8653 44 5677888888887 7888888888888888777 347888888888877 555 78888888
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhc
Q 001357 258 QRAFEIYPYCAMALNYLANHFFFT-G-----QHFLVEQLTETALAV 297 (1093)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~ 297 (1093)
+++... |.++.+++.|+.+|... | ++++|+.+++++...
T Consensus 153 ~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 153 KGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 888777 55555666666666543 2 566666666665543
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.40 E-value=1.1e-12 Score=141.44 Aligned_cols=196 Identities=11% Similarity=0.022 Sum_probs=136.6
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001357 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1093)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 204 (1093)
|.++..++.+|..++..|++++|+..|.+++..+|+++.++..+|.++...|++++|+..|++++..+|++ ..+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999998 77889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 001357 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1093)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1093)
.++..+|++++|+..|.+++.++|++...+.......... .++...........|.++.+...++.++ .|++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI------AKKKRWNSIEERRIHQESELHSYLTRLI--AAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH------HHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH------HHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHH
Confidence 9999999999999999999999886532222222222221 1122222222334555665555554443 4666
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 001357 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK-GDYEKAGLYYMASV 332 (1093)
Q Consensus 285 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 332 (1093)
++|+..+..++.. .|.+......++..+... +.+++|..+|.++.
T Consensus 152 ~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 152 ERELEECQRNHEG---HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HHHHTTTSGGGTT---TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhhhcc---ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6666666655543 233334444444444443 44555666665554
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.39 E-value=2.9e-12 Score=127.66 Aligned_cols=130 Identities=12% Similarity=0.176 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCh--HHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV-EFNRGRY--SDSLE 183 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~-~~~~g~~--~~Al~ 183 (1093)
.+++.+|+..|.+++..+|.++.+|+.+|.+++..|++++|+.+|++++..+|.++.++..+|.+ ++..|++ ++|+.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 56677999999999999999999999999999999999999999999999999999999999999 8899999 99999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 001357 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1093)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1093)
+|++++..+|.+ ..+++.+|.++...|++++|+..|.+++..+|.+......+
T Consensus 103 ~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 103 MIDKALALDSNE-ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 999999999998 77899999999999999999999999999999886554433
No 127
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.39 E-value=1.3e-11 Score=126.95 Aligned_cols=172 Identities=19% Similarity=0.116 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcC----CHHHHHHHH
Q 001357 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG----DYEKAGLYY 328 (1093)
Q Consensus 253 Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~ 328 (1093)
|+..|+++.+. .++.+++.++.+|...+++++|+.+|.++... ..+.+++.+|.+|.. + ++++|+.+|
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----GDGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 44444444433 34445555555555555555555555554432 234555566666555 4 566666666
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHH----cCCHHHHHHH
Q 001357 329 MASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYP--DNCETLKALGHIYVQ----LGQIEKAQEL 398 (1093)
Q Consensus 329 ~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~ 398 (1093)
.++.. +..+.+++.+|.+|.. .+++.+|+.+|+++....| .++.+++.||.+|.. .+++++|+.+
T Consensus 77 ~~A~~-----~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVE-----AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHH-----TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHH-----CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 66654 3445556666666655 5666666666666666554 235666666666666 5566666666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-h-cC-----CHHHHHHHHHHHHHH
Q 001357 399 LRKAAKIDPRDAQAFIDLGELL-I-SS-----DTGAALDAFKTARTL 438 (1093)
Q Consensus 399 l~~~l~~~p~~~~~~~~la~~~-~-~~-----~~~~A~~~~~~a~~~ 438 (1093)
|++++.. |.++.+++.|+.+| . .+ ++++|+.+|+++...
T Consensus 152 ~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 152 FKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 6666655 44555666666666 2 12 566666666655543
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.38 E-value=1.3e-11 Score=145.75 Aligned_cols=175 Identities=11% Similarity=-0.010 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--Ch
Q 001357 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRG--RY 178 (1093)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g--~~ 178 (1093)
++|+..+++++..+|.+..+|+.++.++...|+ +++|+.+++.++..+|.+..+|..++.++...| ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 389999999999999999999999999999998 999999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh-----------
Q 001357 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQAFQRALQLDPENVEALVALAVMDLQANE----------- 246 (1093)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~----------- 246 (1093)
++++.++.+++..+|.+ ..+|...+.++..+| .+++++..+.++++.+|.+..+|..++.++...+.
T Consensus 126 ~~el~~~~k~l~~d~~N-~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~ 204 (567)
T 1dce_A 126 ARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (567)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHHHhhcccc-ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccccc
Confidence 99999999999999999 788999999999999 99999999999999999999999999999887511
Q ss_pred HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 001357 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1093)
Q Consensus 247 ~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1093)
.+.+++++.++.+++.++|.+..+|+.++.++...+.+++
T Consensus 205 ~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 205 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 2458999999999999999999999999999988887554
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.37 E-value=1.2e-12 Score=124.95 Aligned_cols=121 Identities=15% Similarity=0.215 Sum_probs=109.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001357 149 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 149 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
..|.+++..+|++..+++.+|.+++..|+|++|+..|++++..+|.+ ..+++.+|.++..+|++++|+..|++++.++|
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-ARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 56778888899999999999999999999999999999999999999 78899999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHH
Q 001357 229 ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1093)
Q Consensus 229 ~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1093)
+++.+++.+|.++...|+ +++|+..|++++.++|.++.....
T Consensus 84 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGD---LDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp TCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred CCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcchHHH
Confidence 999999999999999999 999999999999999887654433
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.37 E-value=3e-11 Score=118.59 Aligned_cols=132 Identities=10% Similarity=0.115 Sum_probs=118.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
+..++.+|.+++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..|.+++..+|.+ ..+++.+|.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999998 77899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH--HHHhhhHHhHHHHHHHHHHHHHh
Q 001357 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEI 263 (1093)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--~~~~~~~~~~~~Al~~~~~al~~ 263 (1093)
..+|++++|+..|.+++..+|.+..++..++.+ +...|+ +.+|+..+.++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHHHcccchHHH
Confidence 999999999999999999999999888555544 666666 88898888876543
No 131
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.36 E-value=5.9e-12 Score=123.65 Aligned_cols=118 Identities=16% Similarity=0.207 Sum_probs=108.9
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1093)
++.++..++.+|.+++..|+|++|+.+|++++..+|.++.+++.+|.+++..|+|++|+..|++++..+|.+ ..+++.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l 85 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-SKAWSRL 85 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHH
Confidence 455678899999999999999999999999999999999999999999999999999999999999999999 7889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001357 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1093)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1093)
|.++..+|++++|+..|++++.++|++..+++.++....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999887766665443
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.35 E-value=3.9e-12 Score=137.14 Aligned_cols=194 Identities=15% Similarity=-0.007 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
...+..+|..|...|+.. +|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 4 a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYP-----------EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp HHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 346778888888888777 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1093)
.+++.+|.++...|++++|+..|++++..+|++... +...+.... ....+...........|.+......++.+.
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~- 147 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN-FGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI- 147 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-CCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhh-HHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-
Confidence 999999999999999999999999999998866211 111111111 222333344444456777777777777665
Q ss_pred HhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CChHHHHHHHHHHHh
Q 001357 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQLTETALA 296 (1093)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 296 (1093)
.|+ +++|+..+.+++..+|.+......+..++... +.++++..+|.++..
T Consensus 148 -~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 -AAE---RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp -HHH---HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -HHH---HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 455 99999999999999999998888888877776 778889999988775
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.35 E-value=9.7e-12 Score=116.81 Aligned_cols=121 Identities=16% Similarity=0.114 Sum_probs=106.3
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1093)
.|.++..++.+|.+++..|++++|+..|++++..+|.+..+++.+|.++...|++++|+.+|++++..+|.+ ..+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hHHHHHH
Confidence 456778888999999999999999999999999999899999999999999999999999999999998888 6778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 001357 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1093)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1093)
|.++..+|++++|+..|.+++..+|.+..++..++.++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999999999999988888888888877665
No 134
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.34 E-value=2.3e-11 Score=128.69 Aligned_cols=225 Identities=13% Similarity=0.069 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhc
Q 001357 526 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605 (1093)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 605 (1093)
...+.+.+++..+|++.... . .+....+...++..+ . +. |+..+++.+...+.+..++..+|.++..
T Consensus 46 ~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~-~-~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~ 112 (310)
T 3mv2_B 46 TLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFL-D-TK---NIEELENLLKDKQNSPYELYLLATAQAI 112 (310)
T ss_dssp HHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHH-T-TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHh-c-cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 46666778888888876421 1 112222333333333 2 22 7788888877766667777889999999
Q ss_pred ccchHHHHHHHHHhhhcCC-CCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCC------CHHHH
Q 001357 606 NDDWVKAKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS------NLYAA 678 (1093)
Q Consensus 606 ~g~~~~A~~~~~~~l~~~~-~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~a~ 678 (1093)
.|++++|+.++.+.+...+ .....+...++.+ |... |+.+.|.+.++++.+.+|+ .+...
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi-~L~~------------~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEV-ALLN------------NNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 9999999999999887765 2355566667777 8887 8999999999999988882 33334
Q ss_pred HHHHHHHHhcC--CchhHHHHHHHHHHHhcCCCCCC--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcC--------
Q 001357 679 NGAGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY-------- 746 (1093)
Q Consensus 679 ~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------- 746 (1093)
..-+++....| ++.+|..+|+++.+..| + .+..+++ ++..+|++++|...++.+++.+|.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p-----~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~ 251 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFP-----TWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAV 251 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSC-----SHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCC-----CcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCC
Confidence 44466666666 89999999999887765 3 2445555 899999999999999988877653
Q ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcch
Q 001357 747 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 786 (1093)
Q Consensus 747 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 786 (1093)
+.++.++.+++.+.+..|+ +|.+++.++.+.+|+++.+
T Consensus 252 p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 252 LYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred CCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 6679999999988888997 8899999999999998554
No 135
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.34 E-value=2.6e-11 Score=124.86 Aligned_cols=131 Identities=18% Similarity=0.183 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1093)
.++.+|.+++..|++++|+..|++++ + .++.+++.+|.++...|++++|+..|++++..+|.+ ..+++.+|.++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-AVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHH
Confidence 45667777777777777777777764 2 356777777777777777777777777777777776 5667777777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCcH----------------HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001357 210 LGQLGKARQAFQRALQLDPENV----------------EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~----------------~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
+|++++|+..|++++...|.+. .+++.+|.++...|+ +++|+..|.+++.++|.+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC---HHHHHHHHHHHHHcCccc
Confidence 7777777777777777666554 677777777777777 777777777777777765
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.34 E-value=5.2e-12 Score=125.81 Aligned_cols=131 Identities=19% Similarity=0.225 Sum_probs=118.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHHcCCH--
Q 001357 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC-RYKLGQL-- 213 (1093)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~-~~~~g~~-- 213 (1093)
.+...|++++|+..|++++..+|.++.+++.+|.+++..|++++|+.+|++++..+|.+ ..+++.+|.+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-AELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhcCCcch
Confidence 34567899999999999999999999999999999999999999999999999999998 7789999999 8899998
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHH
Q 001357 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1093)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1093)
++|+..|.+++..+|++..++..+|.++...|+ +.+|+..|.+++..+|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQAN---YAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCCCccHH
Confidence 999999999999999999999999999999999 9999999999999999876443
No 137
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.34 E-value=3.8e-11 Score=123.58 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
...++.+|..|...|+.. +|+..|.+++ +| ++.+++.+|.++...|++++|+..|++++..+|.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~-----------~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 71 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWK-----------GALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA 71 (213)
T ss_dssp HHHHHHHHHHHHHTTCHH-----------HHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCCHH-----------HHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 335667888888888776 9999999996 33 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (1093)
.+++.+|.++...|++++|+..|++++...|.+. ..+++.+|.++..+|++++|+..|++++.++
T Consensus 72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 72 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999988762 2789999999999999999999999999999
Q ss_pred CCc
Q 001357 228 PEN 230 (1093)
Q Consensus 228 p~~ 230 (1093)
|++
T Consensus 152 p~~ 154 (213)
T 1hh8_A 152 SEP 154 (213)
T ss_dssp CSG
T ss_pred ccc
Confidence 986
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.34 E-value=2e-11 Score=113.74 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
|..+..+..+|..++..|+|++|+..|.+++..+|.+ ..+++.+|.++..+|++++|+..|.+++.++|+++.+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3456789999999999999999999999999999999 788999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhC------CCcHHHHHHHHHHH
Q 001357 239 VMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYLANHF 278 (1093)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~------p~~~~~~~~la~~~ 278 (1093)
.++...|+ +++|+..|.+++.++ |.+..++..+..+.
T Consensus 80 ~~~~~~~~---~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 80 TAQIAVKE---YASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhC---HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 99999999 999999999999999 88887777766654
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.33 E-value=2.1e-11 Score=113.99 Aligned_cols=122 Identities=21% Similarity=0.285 Sum_probs=106.9
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1093)
+|.++..++.+|..++..|++++|+..|++++...|.++.++..+|.++...|++++|+.+|.+++...|.+ ..+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ 86 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-SKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-HHHHHHH
Confidence 455667888899999999999999999999999999899999999999999999999999999999998888 6778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001357 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1093)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1093)
|.++...|++++|+..|.+++..+|++..++..++.++...|+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999888888888888877765
No 140
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=3.1e-10 Score=120.10 Aligned_cols=247 Identities=13% Similarity=0.018 Sum_probs=149.3
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCC
Q 001357 48 REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE 127 (1093)
Q Consensus 48 ~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~ 127 (1093)
+-+|-.|.|..++.-+.+....+ +......+...|+.+|+.... . ..+..
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~-----------~~~~~~~~~Rs~iAlg~~~~~------------------~-~~~~~ 70 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVT-----------DNTLLFYKAKTLLALGQYQSQ------------------D-PTSKL 70 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCC-----------CHHHHHHHHHHHHHTTCCCCC------------------C-SSSTT
T ss_pred HHHHHhhHHHHHHHHHHhcCccc-----------hHHHHHHHHHHHHHcCCCccC------------------C-CCCHH
Confidence 45566899999998666543221 123555667778888876511 0 11111
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP-SCPGAIRLGIGLC 206 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~~la~~ 206 (1093)
..+.-.++.. + .+. |+..|++.+...+.+..+++.+|.++...|++++|+.++.+.+..+| .....++..++.+
T Consensus 71 ~~a~~~la~~-~-~~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi 145 (310)
T 3mv2_B 71 GKVLDLYVQF-L-DTK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEV 145 (310)
T ss_dssp HHHHHHHHHH-H-TTT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHH-h-ccc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHH
Confidence 1122222222 2 233 78888888877666677778899999999999999999999988887 2236778888999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPE------NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1093)
+.++|+.+.|...++++.+.+|+ .....+.-+.+.+..|. +.+.+|+..|+++....|+.......+. ++..
T Consensus 146 ~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~-~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~ 223 (310)
T 3mv2_B 146 ALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK-ETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQ 223 (310)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC-STTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHH
Confidence 99999999999999998888883 22333333444555551 1278888888888777775222111111 5555
Q ss_pred cCChHHHHHHHHHHHhccCC-------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001357 281 TGQHFLVEQLTETALAVTNH-------GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1093)
Q Consensus 281 ~g~~~~A~~~~~~al~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1093)
.|++++|...++.++...+. .|.++.++.+++.+....|+ +|.+++.++.+
T Consensus 224 ~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 224 QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 55555555555544432111 13344444444444444443 44444444443
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.33 E-value=3.2e-12 Score=130.05 Aligned_cols=139 Identities=16% Similarity=0.217 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHc
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----------------PALLGQACVEFNR 175 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~a~~~la~~~~~~ 175 (1093)
.|...+.......+.....+..+|..++..|+|++|+..|.+++...|.++ .++..+|.++...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 101 (198)
T 2fbn_A 22 AKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101 (198)
T ss_dssp CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444445566788899999999999999999999999888876 7888899999999
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHH
Q 001357 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254 (1093)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al 254 (1093)
|+|++|+..|.+++..+|.+ ..+++.+|.++..+|++++|+..|++++.++|++..++..++.++...++ ..++.
T Consensus 102 ~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~~~ 176 (198)
T 2fbn_A 102 KDYPKAIDHASKVLKIDKNN-VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE---ARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH---HHC--
T ss_pred cCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH---HHHHH
Confidence 99999999999999998888 67788899999999999999999999999999998888888888888776 44444
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.32 E-value=4.7e-11 Score=117.12 Aligned_cols=135 Identities=14% Similarity=0.140 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR 159 (1093)
Q Consensus 80 ~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 159 (1093)
.+....+..+|..|...|+.. +|+..|.+++..+|.++.+++.+|.++...|++++|+..|.+++..+|
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYE-----------NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHccCHH-----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 456778889999999888877 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001357 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR--LGIGLCRYKLGQLGKARQAFQRALQL 226 (1093)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~ 226 (1093)
.++.+++.+|.++...|++++|+.+|++++..+|.+ ..++ +.++..+...|++++|+..+.++..+
T Consensus 79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999999999999999999998 5556 44555588899999999999887654
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.31 E-value=3.1e-12 Score=130.18 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-------------
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------------- 196 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------------- 196 (1093)
.....+......|.++.|...+.......+..+..+..+|.+++..|+|.+|+..|.+++...|.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 3444556666778899999888877777777788999999999999999999999999999999884
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001357 197 --GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (1093)
Q Consensus 197 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~l 274 (1093)
..+++.+|.++..+|++++|+..|.+++.++|.+..+++.+|.++...|+ +++|+..|++++.++|.++.++..+
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l 162 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF---LEEAKENLYKAASLNPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 27899999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHcCChHHHH
Q 001357 275 ANHFFFTGQHFLVE 288 (1093)
Q Consensus 275 a~~~~~~g~~~~A~ 288 (1093)
+.++...++..++.
T Consensus 163 ~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 163 ELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH
Confidence 99988887776655
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.31 E-value=7e-11 Score=109.22 Aligned_cols=120 Identities=27% Similarity=0.503 Sum_probs=105.1
Q ss_pred CCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 001357 124 DMHE-PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1093)
Q Consensus 124 ~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1093)
+|.. ..+++.+|.++...|++++|+..|.+++...|.++.++..+|.++...|++++|+.+|++++...|.+ ..+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~ 82 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYN 82 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-HHHHHH
Confidence 4555 67888899999999999999999999999999999999999999999999999999999999999988 677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001357 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1093)
+|.++...|++++|+..|.+++..+|.+..++..++.++...
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999888888877654
No 145
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.31 E-value=3.2e-09 Score=123.39 Aligned_cols=208 Identities=7% Similarity=0.002 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhh
Q 001357 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 621 (1093)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 621 (1093)
.....+|++++...|..+..|+..+..+...|+.+.|..+|++++.. |.+..+|..++... ..++. ...++...+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~~--~~~l~~~~~~ 271 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEAV--YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTHH--HHHHHHHTC-
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhHH--HHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999 99988877666552 11211 1111111110
Q ss_pred cC-------CCCC-hHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-Cch
Q 001357 622 AT-------DGKD-SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG-QFD 692 (1093)
Q Consensus 622 ~~-------~~~d-~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g-~~~ 692 (1093)
.. +... ...+...+.. .... +..+.|..+|.++ ...+.....+...|.+....+ +.+
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~-~~r~------------~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNY-VLKK------------RGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp ---------CHHHHHHHHHHHHHH-HHHH------------HCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSH
T ss_pred hccchhhhhcccccHHHHHHHHHH-HHHc------------CCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChH
Confidence 00 0001 1122222222 2122 6789999999999 433334455555565555555 699
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHH
Q 001357 693 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKS 772 (1093)
Q Consensus 693 ~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~ 772 (1093)
.|..+|+.+++..| +.+..|..++......|+.+.|..+|+++. ....+|......-...|+.+.+..+
T Consensus 338 ~ar~ife~al~~~~-----~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v 406 (493)
T 2uy1_A 338 TPYNIFSSGLLKHP-----DSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFREL 406 (493)
T ss_dssp HHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999887 667888888888889999999999999872 2467777777777788999999999
Q ss_pred HHHHHH
Q 001357 773 LLRAIH 778 (1093)
Q Consensus 773 ~~~al~ 778 (1093)
+++++.
T Consensus 407 ~~~~~~ 412 (493)
T 2uy1_A 407 VDQKMD 412 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998886
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.30 E-value=4.4e-11 Score=113.12 Aligned_cols=121 Identities=15% Similarity=0.181 Sum_probs=107.1
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 001357 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1093)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1093)
.+|.++..++.+|.+++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|.+ ..+++.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~ 82 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFF 82 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HHHHHH
Confidence 4678889999999999999999999999999999999999999999999999999999999999999999998 778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHh
Q 001357 203 IGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQA 244 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~~ 244 (1093)
+|.++..+|++++|+..|.+++.++|+ +..++..+..+....
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 566666665554443
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.29 E-value=4e-11 Score=111.63 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=92.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------HHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIRL 201 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~~ 201 (1093)
..++..+|..++..|+|++|+..|++++..+|+++.++..+|.+++..|+|++|+..|++++.++|... ..+++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456778999999999999999999999999999999999999999999999999999999999987662 34678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPE 229 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1093)
.+|.++..+|++++|+..|++++...|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 8999999999999999999999998885
No 148
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.29 E-value=2.1e-11 Score=112.36 Aligned_cols=103 Identities=13% Similarity=0.120 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1093)
..++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|++ ..+++.+|.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999998 678899999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHH
Q 001357 209 KLGQLGKARQAFQRALQLDPENVE 232 (1093)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~ 232 (1093)
..|++++|+..|+++++++|++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999887643
No 149
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.29 E-value=9.1e-11 Score=127.57 Aligned_cols=193 Identities=15% Similarity=0.083 Sum_probs=144.4
Q ss_pred CCCCCChhHHHHHHHhc-CCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhch
Q 001357 20 DQLPRDASDILDILKAE-QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGK 98 (1093)
Q Consensus 20 ~~lp~~~~~~~~~l~~e-~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~ 98 (1093)
+-|.-++..++...... +.....+...+..|+.+|++++|+..+.+++...+.. ......+..+..+|.+|...|.
T Consensus 54 ~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 130 (293)
T 2qfc_A 54 AKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVD 130 (293)
T ss_dssp TTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHhCcCHHHHhccccccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC---hhHHHHHHHHHHHHHHHhcCCC
Confidence 44555566666655433 3456678889999999999999999998876542211 1112344455667777777776
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHhcCCCC------hhhHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHH
Q 001357 99 IETKQREKEEHFILATQYYNKASRIDMHE------PSTWVGKGQLLLAKGEVEQASSAFKIVL---EADRDNV----PAL 165 (1093)
Q Consensus 99 ~~~~~~~r~~~~~~A~~~~~~a~~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~~~~al---~~~p~~~----~a~ 165 (1093)
.. +|+..|.+++...+.. ..++..+|.+|...|++++|+.+|++++ ...|.+. .++
T Consensus 131 ~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 131 YE-----------YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HH-----------HHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HH-----------HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 55 8999999998765543 4578889999999999999999999998 4566543 688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhh
Q 001357 166 LGQACVEFNRGRYSDSLEFYKRALQVHPS-----CPGAIRLGIGLCRYKLGQLGKA-RQAFQRALQL 226 (1093)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~-----~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 226 (1093)
+.+|.++...|+|++|+.+|++++...+. ....+++.+|.++..+|++++| ...|++++.+
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 89999999999999999999999877532 1356788899999999999999 7778888764
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.29 E-value=5.4e-11 Score=116.66 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=109.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCH
Q 001357 671 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 750 (1093)
Q Consensus 671 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 750 (1093)
.+.++.+++.+|.++...|++++|+.+|+++++..| .++.+|+++|.+|..+|++++|+..|++++.. .+.++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 79 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-----ANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYS 79 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCH
Confidence 455778899999999999999999999999999998 78999999999999999999999999999998 67789
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 001357 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 794 (1093)
Q Consensus 751 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 794 (1093)
.+++.+|.+|+..|++++|+.+|++++.++|++...+++.++..
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999877777753
No 151
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.29 E-value=2.8e-13 Score=157.02 Aligned_cols=176 Identities=16% Similarity=0.172 Sum_probs=134.7
Q ss_pred HHHHHHHHHHH----HHhcCCCChhhHHHHHHHH------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001357 109 HFILATQYYNK----ASRIDMHEPSTWVGKGQLL------------LAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172 (1093)
Q Consensus 109 ~~~~A~~~~~~----a~~~~p~~~~~~~~~a~~~------------~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 172 (1093)
.++.|+..+.+ ++.++|.. +|...|... ...+++++|+..|+.++...|....++..+|.++
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~ 278 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVY 278 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHH
Confidence 45567776666 66666643 333233221 1345667788888888888888888888888888
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCh--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 173 FNRGRYSDSLEFYKRALQVHPSCP--------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
+..|+|.+|+..|.+++..+|.+. ..+++.+|.||.++|++++|+..|.+++.++|+++.+++.+|
T Consensus 279 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g 358 (457)
T 1kt0_A 279 FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG 358 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 888999999999999888888874 467888888888889999999999988888888888888888
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 001357 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (1093)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (1093)
.++...|+ +++|+..|++++.++|.+..++..++.++...+++.++..
T Consensus 359 ~a~~~~g~---~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 359 EAQLLMNE---FESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888 8888888888888888888888888888888777776554
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.27 E-value=1.1e-10 Score=106.60 Aligned_cols=114 Identities=16% Similarity=0.236 Sum_probs=103.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1093)
.+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|.+ ..+++.+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HHHHHHHHHH
Confidence 356788899999999999999999999999999999999999999999999999999999999999988 7788999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1093)
+..+|++++|+..|.+++..+|++..++..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999998888887664
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.27 E-value=3e-10 Score=123.43 Aligned_cols=182 Identities=11% Similarity=0.045 Sum_probs=146.8
Q ss_pred cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh------HHHHhhhhhhcccchHHHHHHHHHhhhcCCCC-C
Q 001357 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDGK-D 627 (1093)
Q Consensus 555 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~-d 627 (1093)
.|.....+...+..+...|++++|+..+.+++...+.... .++.+|.++...|++++|+..|.+++...+.. +
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 4455666777888889999999999999999998876543 45678888899999999999999998754331 1
Q ss_pred ----hHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHhcCCchhHHH
Q 001357 628 ----SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI---VQHTSNL----YAANGAGVVLAEKGQFDVSKD 696 (1093)
Q Consensus 628 ----~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l---~~~p~~~----~a~~~la~~~~~~g~~~~A~~ 696 (1093)
..++..+|.+ |... |++++|+.+|++++ ...|.+. .+++++|.+|...|++++|+.
T Consensus 151 ~~~~~~~~~~lg~~-y~~~------------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~ 217 (293)
T 2qfc_A 151 VYQNLYIENAIANI-YAEN------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp TTHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH
Confidence 3478889999 9888 99999999999999 5566632 688999999999999999999
Q ss_pred HHHHHHHHhcCC-CCCCchhHHHHHHHHHHHhcCHHHH-HHHHHHHHHhhcCCCC
Q 001357 697 LFTQVQEAASGS-VFVQMPDVWINLAHVYFAQGNFALA-MKMYQNCLRKFYYNTD 749 (1093)
Q Consensus 697 ~~~~~~~~~p~~-~~~~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~~~~~~ 749 (1093)
+|+++++..+.. .....+.+++++|.+|..+|++++| ..+|++++..+..-.+
T Consensus 218 ~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 999999886421 1112478899999999999999999 7889999887644443
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.27 E-value=6.4e-11 Score=111.09 Aligned_cols=122 Identities=17% Similarity=0.263 Sum_probs=112.3
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 001357 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1093)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1093)
.|.++.+++.+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++..+|.+..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 35678899999999999999999999999999999998 77899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001357 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1093)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1093)
|.++...|+ +++|+..|.+++..+|.+..++..++.++...|+
T Consensus 91 a~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKD---YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999 9999999999999999999888888888876653
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.27 E-value=1.2e-10 Score=108.59 Aligned_cols=122 Identities=15% Similarity=0.189 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR 159 (1093)
Q Consensus 80 ~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 159 (1093)
+....++..+|..|...|+.. +|+..|.+++..+|.++.+++.+|.++...|++++|+.+|.+++..+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 77 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFE-----------AAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhhhHHHHHHHHHHHHccCHH-----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc
Confidence 356778889999999888877 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001357 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1093)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1093)
.++.+++.+|.++...|++++|+.+|++++...|.+ ..++..+|.++..+|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 78 AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN-ETYKSNLKIAELKLREA 130 (131)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999998 77889999999998875
No 156
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.26 E-value=6.6e-12 Score=145.48 Aligned_cols=147 Identities=16% Similarity=0.233 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHc
Q 001357 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------------VPALLGQACVEFNR 175 (1093)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~la~~~~~~ 175 (1093)
.+|+..|..++..+|.....+..+|..++..|+|++|+..|.+++..+|.+ ..+++.+|.+++.+
T Consensus 251 ~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330 (457)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367778888888888899999999999999999999999999999999998 79999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHH
Q 001357 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME 255 (1093)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~ 255 (1093)
|+|++|+..|.+++.++|++ ..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++ +.++..
T Consensus 331 g~~~~A~~~~~~al~~~p~~-~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~a~~ 406 (457)
T 1kt0_A 331 REYTKAVECCDKALGLDSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE---HNERDR 406 (457)
T ss_dssp TCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH---HHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHHH
Confidence 99999999999999999999 78899999999999999999999999999999999999999999999988 665553
Q ss_pred -HHHHHH
Q 001357 256 -KMQRAF 261 (1093)
Q Consensus 256 -~~~~al 261 (1093)
.|.+++
T Consensus 407 ~~~~~~f 413 (457)
T 1kt0_A 407 RIYANMF 413 (457)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 344333
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.25 E-value=7.3e-11 Score=115.47 Aligned_cols=117 Identities=16% Similarity=0.198 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEA------------------DRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1093)
+..+..+|..++..|+|++|+..|.+++.. +|.++.+++.+|.+++..|+|++|+..|.+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 457888999999999999999999999998 66677889999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHhh
Q 001357 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV-EALVALAVMDLQAN 245 (1093)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~~ 245 (1093)
.++|.+ ..+++.+|.++..+|++++|+..|.+++.++|++. .+...++.+.....
T Consensus 91 ~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 91 KREETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred hcCCcc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999988 77788899999999999999999999999999888 55666666555443
No 158
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.25 E-value=3.4e-11 Score=113.42 Aligned_cols=106 Identities=17% Similarity=0.198 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHh----
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD-------NVP-----ALLGQACVEFNRGRYSDSLEFYKRALQV---- 191 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----a~~~la~~~~~~g~~~~Al~~~~~al~~---- 191 (1093)
...++.+|..++..|+|++|+..|++++..+|+ +.. +|..+|.++..+|+|++|+..|++++.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 346778889999999999999999999999888 433 7777777777788888888887777777
Q ss_pred ---CCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 192 ---HPSCPGAIR----LGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 192 ---~p~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
+|++ ..+| +++|.++..+|++++|+..|+++++++|++....
T Consensus 91 ~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 91 GELNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp CCTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred ccCCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 7766 5566 7777777777777777777777777777654443
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2.1e-10 Score=109.90 Aligned_cols=119 Identities=18% Similarity=0.151 Sum_probs=107.6
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Q 001357 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1093)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1093)
..+|.+...++.+|..++..|++++|+.+|++++..+|++ ..+++.+|.++...|++++|+..|++++..+|.+ ..
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 100 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VK 100 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HH
Confidence 3457788899999999999999999999999999999987 8899999999999999999999999999999988 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001357 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1093)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1093)
+++.+|.++..+|++++|+..|.+++.++|++..++..++.+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8899999999999999999999999999999988888777664
No 160
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.22 E-value=2.7e-10 Score=106.32 Aligned_cols=115 Identities=21% Similarity=0.179 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGI 203 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~l 203 (1093)
..++.+|.+++..|++++|+..|++++..+|+++ .+++.+|.+++..|++++|+..|++++..+|++. +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4678899999999999999999999999999887 7999999999999999999999999999998873 5568889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001357 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1093)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1093)
|.++..+|++++|+..|++++...|++..+...+..+...
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999988776666555433
No 161
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.21 E-value=4.5e-10 Score=103.66 Aligned_cols=121 Identities=29% Similarity=0.457 Sum_probs=107.9
Q ss_pred CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 001357 158 DRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1093)
Q Consensus 158 ~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1093)
+|.. ..+++.+|.++...|++++|+.+|.+++...|.+ ..+++.+|.++...|++++|+..|.+++..+|.+..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 4555 7789999999999999999999999999999988 6788999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001357 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1093)
Q Consensus 237 la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1093)
++.++...|+ +.+|+..|.+++..+|.++.++..++.++...|
T Consensus 83 la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 83 LGNAYYKQGD---YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999998 999999999999999999988888888776543
No 162
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.21 E-value=2e-10 Score=124.86 Aligned_cols=168 Identities=13% Similarity=0.074 Sum_probs=117.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCChh------HHHHhhhhhhcccchHHHHHHHHHhhhcCCC-CC----hHHHHH
Q 001357 565 LAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDG-KD----SYATLS 633 (1093)
Q Consensus 565 la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~d----~~~~~~ 633 (1093)
.+..+...|++++|..++++++...+..+. .+..+|.++...+++++|+..|.+++...+. .+ ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 355566667777777777777766655544 2234677777777888888888888774322 22 225677
Q ss_pred hHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhc
Q 001357 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706 (1093)
Q Consensus 634 l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 706 (1093)
+|.+ |... |++++|+.+|++++.. .|....+++++|.+|...|++++|+.+++++++..+
T Consensus 161 lg~~-y~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 161 IANI-YAEN------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHH-HHHT------------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHc------------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 8888 8887 8888888888888842 122344677888888888888888888888887764
Q ss_pred CCC-CCCchhHHHHHHHHHHHhcC-HHHHHHHHHHHHHhhc
Q 001357 707 GSV-FVQMPDVWINLAHVYFAQGN-FALAMKMYQNCLRKFY 745 (1093)
Q Consensus 707 ~~~-~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~ 745 (1093)
... ....+.+++++|.+|..+|+ +++|+.+|++++..+.
T Consensus 228 ~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 321 11236778888888888884 6888888888887653
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.21 E-value=1.7e-10 Score=108.94 Aligned_cols=118 Identities=22% Similarity=0.267 Sum_probs=104.5
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001357 156 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1093)
Q Consensus 156 ~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1093)
..+|.++..++.+|.+++..|+|++|+..|.+++..+|.+ ..+++.+|.++..+|+++.|+..|.+++.++|+++.+++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHH
Confidence 3467889999999999999999999999999999999998 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC-----cHHHHHHHHHH
Q 001357 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPY-----CAMALNYLANH 277 (1093)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~~~p~-----~~~~~~~la~~ 277 (1093)
.+|.++...|+ +.+|+..|.+++.++|. +..+...+..+
T Consensus 82 ~l~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 82 FLGQCQLEMES---YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhh---HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999887 45454444433
No 164
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.21 E-value=1.5e-10 Score=106.50 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001357 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1093)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1093)
.++.+|.+++..|++++|+..|++++..+|++ ..+++.+|.++..+|++++|+..|++++.++|+++.++..+|.++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999 77899999999999999999999999999999999999999999999
Q ss_pred hhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 244 ANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
.|+ +.+|+..|++++..+|.+.
T Consensus 98 ~g~---~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHN---ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHH---HHHHHHHHHHHHC------
T ss_pred cCC---HHHHHHHHHHHHHhCcCCC
Confidence 998 9999999999999998765
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.20 E-value=1.1e-10 Score=105.50 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=100.3
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChHHHH
Q 001357 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS--CPGAIR 200 (1093)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~--~~~~~~ 200 (1093)
++|.++.+++.+|.+++..|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|++++...|. . ..++
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~ 79 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-KDVW 79 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-HHHH
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999 7 7789
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHhhCCCc
Q 001357 201 LGIGLCRYKL-GQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 201 ~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 230 (1093)
+.+|.++..+ |++++|+..|.+++...|.+
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999999999 99999999999999998875
No 166
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.20 E-value=1.8e-10 Score=125.29 Aligned_cols=170 Identities=15% Similarity=0.092 Sum_probs=103.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc---hhhHHH
Q 001357 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTK---SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF---IFPYYG 347 (1093)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~ 347 (1093)
.+..++..|++++|..++..++......+.. ...+..+|.++...|++++|+.+|.+++......++. ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3455566666666666666666543222221 1233346777777777777777777777633222222 335677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---C----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 001357 348 LGQVQLKLGDFRSALTNFEKVLEI---Y----PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFI 414 (1093)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~------~~~~~ 414 (1093)
+|.+|...|++++|+.+|++++.. . +....+++++|.+|...|++++|+.++++++.+.+.. ..+++
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777777777777777777742 1 1123466777777777777777777777776654222 56666
Q ss_pred HHHHHH-hcC-CHHHHHHHHHHHHHHHHhcC
Q 001357 415 DLGELL-ISS-DTGAALDAFKTARTLLKKAG 443 (1093)
Q Consensus 415 ~la~~~-~~~-~~~~A~~~~~~a~~~~~~~~ 443 (1093)
.+|.++ ..| .+++|+.+|++++.+....+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~ 271 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 777766 666 35677777777766665543
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.1e-09 Score=126.45 Aligned_cols=207 Identities=9% Similarity=0.104 Sum_probs=151.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN-----------------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1093)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----------------~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~ 408 (1093)
+..|..+...|+|++|+..|..+++..|.. ..++..+|.+|...|++++|+.++.+++...+.
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555544332 135677888888888888888888888776443
Q ss_pred C------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchh
Q 001357 409 D------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480 (1093)
Q Consensus 409 ~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 480 (1093)
. ..+...++.++ ..|+++.|+.++..++...+....... ..++.++|.+|...|++.+|..++.+++....
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~- 166 (434)
T 4b4t_Q 88 FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK- 166 (434)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-
T ss_pred ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH-
Confidence 2 23445566777 788999999999999988877544333 67889999999999999999999999876421
Q ss_pred hhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC---C
Q 001357 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ---D 557 (1093)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~ 557 (1093)
.....+....++..++.+|...|++.+|..+|++++...+ .
T Consensus 167 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 210 (434)
T 4b4t_Q 167 ------------------------------------KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC 210 (434)
T ss_dssp ------------------------------------TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred ------------------------------------hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC
Confidence 0113456778899999999999999999999999887542 2
Q ss_pred ----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 001357 558 ----YVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (1093)
Q Consensus 558 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 589 (1093)
....+..+|.++...+++.+|..+|..++...
T Consensus 211 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 211 PTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 14567778888888999999999999988754
No 168
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=7.2e-10 Score=130.89 Aligned_cols=171 Identities=12% Similarity=0.017 Sum_probs=145.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC-
Q 001357 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR----------YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG- 211 (1093)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~----------~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g- 211 (1093)
..++|+..+.+++..+|++..+|..++.++...|+ +++++..+.+++..+|.+ ..+|+..+.++..+|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~-y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-YGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccc
Confidence 34788999999999999999999999999999998 999999999999999999 788999999999999
Q ss_pred -CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh-hHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------
Q 001357 212 -QLGKARQAFQRALQLDPENVEALVALAVMDLQAN-EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT-------- 281 (1093)
Q Consensus 212 -~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~-~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~-------- 281 (1093)
++++|+..+.++++.+|.|..+|...+.+....+ . +++++.++.++++.+|.+..+|+..+.++...
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~---~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA---PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC---HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 7799999999999999999999999999999988 6 89999999999999999999999999988775
Q ss_pred ------CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCC
Q 001357 282 ------GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320 (1093)
Q Consensus 282 ------g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~ 320 (1093)
+.+++++.++.+++... |.+..+|+.++.++...++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~---P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD---PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC---SSCSHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHHHHhhC---CCCccHHHHHHHHHhcCCC
Confidence 33455555555555433 4444555555555555544
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.18 E-value=1.8e-10 Score=107.22 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR 159 (1093)
Q Consensus 80 ~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 159 (1093)
.+....+..||..|+..|++. +|+..|++++.++|.++.+|..+|.+|+..|++++|+..|++++.++|
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~-----------~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFE-----------KAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 355667788899998888776 999999999999999999999999999999999999999999999887
Q ss_pred CC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 160 DN-------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 160 ~~-------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
++ ..++..+|.++...|++++|+..|++++...|+.
T Consensus 74 ~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 65 3578899999999999999999999999998864
No 170
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.17 E-value=1.7e-10 Score=112.75 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQV------------------HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~------------------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (1093)
+..+..+|..++..|+|.+|+..|.+++.. +|.. ..+++.+|.||..+|++++|+..|.++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN-IPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTH-HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH-HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 567899999999999999999999999998 4544 578999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHH
Q 001357 224 LQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA-MALNYLANHFFF 280 (1093)
Q Consensus 224 l~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~-~~~~~la~~~~~ 280 (1093)
+.++|+++.+++.+|.++...|+ +++|+..|.+++.++|.++ .+...+..+...
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~---~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWK---LDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhc---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999999999998 556666555433
No 171
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.17 E-value=2.6e-10 Score=116.17 Aligned_cols=176 Identities=18% Similarity=0.163 Sum_probs=123.7
Q ss_pred hcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHh------hCCCCHHH
Q 001357 604 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV------QHTSNLYA 677 (1093)
Q Consensus 604 ~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~------~~p~~~~a 677 (1093)
+..|++++|...+..+.. .|.....++..+|.+ |... |++++|+.+|.+++. ..|....+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 68 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYV-YAFM------------DRFDEARASFQALQQQAQKSGDHTAEHRA 68 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHH-HHHh------------CcHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 345666666664333322 233345566666666 6666 777777777777766 33445678
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcCCC-CC-CchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC----HH
Q 001357 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQ 751 (1093)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~ 751 (1093)
+..+|.++...|++++|+..|.+++....... .+ ....++.++|.++...|++++|+..|++++...+...+ ..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 88999999999999999999999998843211 11 23567899999999999999999999999987655555 44
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 001357 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 794 (1093)
Q Consensus 752 ~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 794 (1093)
++..+|.++...|++++|..+|++++.+...... .+..+.++
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 190 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED-SEAVNELM 190 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 5789999999999999999999999987653221 34444443
No 172
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.16 E-value=1.9e-10 Score=108.33 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------Ch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS-------CP----GAIRLGIGLCRYKLGQLGKARQAFQRALQL---- 226 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-------~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 226 (1093)
...++.+|..++..|+|++|+..|++++..+|+ +. ..+|.++|.++..+|++++|+..|.+++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456889999999999999999999999999999 31 238999999999999999999999999999
Q ss_pred ---CCCcHHHH----HHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHH
Q 001357 227 ---DPENVEAL----VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1093)
Q Consensus 227 ---~p~~~~a~----~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1093)
+|++..+| +.+|.++...|+ +++|+..|+++++++|.+..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHCCSC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999 999999999999999877643
No 173
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.15 E-value=9.5e-10 Score=100.30 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1093)
.+..++.+|.+++..|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|.+++..+|.++.++..+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 45778899999999999999999999999999988 77889999999999999999999999999999999999999999
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001357 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1093)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1093)
+...|+ +.+|+..|.+++..+|.++.++..++.+.
T Consensus 82 ~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNR---FEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTC---HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhh---HHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999998 99999999999999999988887776653
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.15 E-value=3.2e-09 Score=122.69 Aligned_cols=204 Identities=11% Similarity=0.080 Sum_probs=145.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----------------PALLGQACVEFNRGRYSDSLEFYKRAL 189 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1093)
.|.+.+..|..+...|+|++|+..|..+++..|... .++..+|.+|...|++++|+.+|.+++
T Consensus 3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456778888889999999999999999998877542 357888999999999999999999888
Q ss_pred HhCCCCh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 001357 190 QVHPSCP-----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP------ENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1093)
Q Consensus 190 ~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~~~~~~~~~Al~~~~ 258 (1093)
...+... ..++..++.++...|+++.|+..+..++...+ ....++..+|.++...|+ +.+|+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~ 159 (434)
T 4b4t_Q 83 EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ---YKDSLALIN 159 (434)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC---HHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC---hHHHHHHHH
Confidence 7765441 23455677777788888888888888876532 235567777888887777 777887777
Q ss_pred HHHHh------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCC----chHHHHHHHHHHHhcCCHHHHHHHH
Q 001357 259 RAFEI------YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT----KSHSYYNLARSYHSKGDYEKAGLYY 328 (1093)
Q Consensus 259 ~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~ 328 (1093)
.++.. .+....++..++.+|...|++.+|..++.+++......+. ....+..+|..+...|+|.+|..+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 77654 2334556666677777777777777777766644322221 2345566666667777777777777
Q ss_pred HHHHH
Q 001357 329 MASVK 333 (1093)
Q Consensus 329 ~~al~ 333 (1093)
..++.
T Consensus 240 ~~a~~ 244 (434)
T 4b4t_Q 240 FESFE 244 (434)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 175
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.14 E-value=5.7e-10 Score=113.57 Aligned_cols=158 Identities=15% Similarity=0.183 Sum_probs=92.8
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcC
Q 001357 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI------YPDNCETLKALGHIYVQLG 390 (1093)
Q Consensus 317 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g 390 (1093)
..|++++|...+..... .+.....++..+|.++...|++++|+.+|.+++.. .|....++..+|.++...|
T Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA---HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ---CHHHHHHHHHHHHT---STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 34555555553333321 22244455555666666666666666666655552 2233456666666666666
Q ss_pred CHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHc
Q 001357 391 QIEKAQELLRKAAKI---DPR----DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEK 461 (1093)
Q Consensus 391 ~~~~A~~~l~~~l~~---~p~----~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~ 461 (1093)
++++|+.++.+++.+ .++ ...++..+|.++ ..|++++|+.++.+++.+.+..+.... ..++.++|.++...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 666666666666655 232 234566666666 667777777777777666554332211 34567788888888
Q ss_pred CCHHHHHHHHHHHHhc
Q 001357 462 GEFESAHQSFKDALGD 477 (1093)
Q Consensus 462 g~~~~A~~~~~~al~~ 477 (1093)
|++++|..+|.+++..
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 8888888888888774
No 176
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.14 E-value=1.9e-10 Score=108.03 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=77.9
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001357 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV----------EQASSAFKIVLEADRDNVPALLGQACVEF 173 (1093)
Q Consensus 104 ~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~la~~~~ 173 (1093)
..|.+.|++|+..|.+++.++|.++.+|+.+|.++...|++ ++|+..|++++.++|++..+|+.+|.+|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999998875 47888888888888888888888887777
Q ss_pred HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 001357 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1093)
Q Consensus 174 ~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1093)
..|.+ .|.. +. ..|++++|+.+|+++++++|++..+
T Consensus 92 ~lg~l-------------~P~~-~~----------a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 92 SFAFL-------------TPDE-TE----------AKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHH-------------CCCH-HH----------HHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred Hhccc-------------Ccch-hh----------hhccHHHHHHHHHHHHHhCCCCHHH
Confidence 76532 2222 10 0145666666666666666666543
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.12 E-value=7.5e-10 Score=103.21 Aligned_cols=118 Identities=18% Similarity=0.203 Sum_probs=103.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------HHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIR 200 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~ 200 (1093)
.+..++.+|.+++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+.+|.+++...|... ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999877541 5678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 001357 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1093)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1093)
+.+|.++...|++++|+..|++++...| +...+..++.+....+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999988 6777777777665543
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.11 E-value=1.3e-09 Score=101.60 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN---VEALVAL 237 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l 237 (1093)
.+++.+|.+++..|+|++|+..|++++..+|++.. .+++.+|.++...|++++|+..|.+++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 35788999999999999999999999999998832 688999999999999999999999999999999 8899999
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001357 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1093)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1093)
|.++...|+ +++|+..|++++..+|+++.+......+..
T Consensus 83 a~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 83 GLSQYGEGK---NTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHcCC---HHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 999999999 999999999999999999877665554443
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.11 E-value=9.2e-11 Score=129.96 Aligned_cols=139 Identities=18% Similarity=0.233 Sum_probs=78.9
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----------------PALLGQACVEFNRGRYSDSLEFYKRA 188 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1093)
.....+..+|..++..|+|++|+..|.+++...|.+. .+++.+|.++...|+|++|+..|+++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456788899999999999999999999999998876 36777777777777777777777777
Q ss_pred HHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-hhHHhHHHHHHHHHHHHHhCCCc
Q 001357 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
+..+|.+ ..+++.+|.+|..+|++++|+..|++++.++|++..++..++.+.... +. ...+...|.+++...|.+
T Consensus 257 l~~~p~~-~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~---~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 257 LTEEEKN-PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL---YQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp HHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhCCCCCC
Confidence 7777777 566777777777777777777777777777777777777777664332 22 566666777777776655
Q ss_pred H
Q 001357 268 A 268 (1093)
Q Consensus 268 ~ 268 (1093)
+
T Consensus 333 ~ 333 (338)
T 2if4_A 333 G 333 (338)
T ss_dssp -
T ss_pred C
Confidence 4
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.10 E-value=4.4e-10 Score=101.54 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=101.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCH
Q 001357 671 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 750 (1093)
Q Consensus 671 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 750 (1093)
+|++..++..+|.++...|++++|+..|+++++..| .++.+++++|.++...|++++|+..|++++...+...++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 76 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-----EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK 76 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH
Confidence 688899999999999999999999999999999988 678999999999999999999999999999984332279
Q ss_pred HHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCCCCc
Q 001357 751 QILLYLARTHYEA-EQWQDCKKSLLRAIHLAPSNY 784 (1093)
Q Consensus 751 ~~l~~la~~~~~~-g~~~~A~~~~~~al~~~P~~~ 784 (1093)
.++..+|.++... |++++|.++|++++...|.++
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999999999 999999999999999999875
No 181
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.6e-09 Score=103.69 Aligned_cols=119 Identities=20% Similarity=0.255 Sum_probs=109.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
..|.+...++.+|.+++..|++.+|+.+|++++...|++ ...+++.+|.++...|++++|+..|.+++..+|.+..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 357789999999999999999999999999999999975 256789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001357 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1093)
Q Consensus 235 ~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1093)
+.+|.++...|+ +.+|+..|.+++.++|.+..++..++.+.
T Consensus 103 ~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 103 YRRSQALEKLGR---LDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999 99999999999999999998887776654
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.08 E-value=4.5e-11 Score=138.94 Aligned_cols=136 Identities=10% Similarity=0.112 Sum_probs=116.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
+..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|.+ ..+++.+|.+|
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~lg~~~ 84 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASN 84 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 44567778888999999999999999999999999999999999999999999999999999999998 77889999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH--HHHhhhHHhHHHHHHHHH-----------HHHHhCCCc
Q 001357 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQ-----------RAFEIYPYC 267 (1093)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--~~~~~~~~~~~~Al~~~~-----------~al~~~p~~ 267 (1093)
..+|++++|+..|+++++++|++..++..++.+ +...|+ +++|+..+. +++.+.|..
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH---HCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHhccccccchhHhhhhhhhccccccc
Confidence 999999999999999999999999998888887 777777 999999988 666666543
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.07 E-value=2.2e-11 Score=141.63 Aligned_cols=125 Identities=14% Similarity=0.225 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1093)
++|++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++
T Consensus 20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 99 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYET 99 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhCCCcHHH
Q 001357 188 ALQVHPSCPGAIRLGIGLC--RYKLGQLGKARQAFQ-----------RALQLDPENVEA 233 (1093)
Q Consensus 188 al~~~p~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~~~a 233 (1093)
++..+|++ ..++..++.+ +...|++++|+..++ +++.++|+...+
T Consensus 100 al~~~p~~-~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 100 VVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp HHHHSTTC-TTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred HHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence 99999998 5677888888 889999999999999 888887775444
No 184
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.06 E-value=2e-09 Score=100.28 Aligned_cols=120 Identities=14% Similarity=0.185 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCC-CC--
Q 001357 673 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TD-- 749 (1093)
Q Consensus 673 ~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~-- 749 (1093)
..+.+++.+|.++...|++++|+.+|.+++...| .++.+++++|.+|...|++++|+.+|++++...+.. .+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDP-----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 3456788999999999999999999999999987 678999999999999999999999999999987643 33
Q ss_pred --HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHH
Q 001357 750 --AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 798 (1093)
Q Consensus 750 --~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~~ 798 (1093)
+.+++.+|.++...|++++|..+|++++...| ++.+...++.++....
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999 6788888887755443
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.05 E-value=2.1e-10 Score=127.03 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCCh-----------------hhHHHHHHHHHHcC
Q 001357 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP-----------------STWVGKGQLLLAKG 142 (1093)
Q Consensus 80 ~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~-----------------~~~~~~a~~~~~~g 142 (1093)
+.....+..+|..|+..|++. +|+..|.+++...|.+. .+|+.+|.+|+..|
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~-----------~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g 244 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLE-----------EAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCH-----------HHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcCCHH-----------HHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345666777888887777766 99999999999999877 48999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHHcCCHHHHHHHHH
Q 001357 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC-RYKLGQLGKARQAFQ 221 (1093)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~-~~~~g~~~~A~~~~~ 221 (1093)
+|++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|++ ..++..++.+ ....+..+.+...|.
T Consensus 245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 6778888888 445677888999999
Q ss_pred HHHhhCCCcHH
Q 001357 222 RALQLDPENVE 232 (1093)
Q Consensus 222 ~al~~~p~~~~ 232 (1093)
+++...|.+..
T Consensus 324 ~~l~~~p~~~~ 334 (338)
T 2if4_A 324 GIFKGKDEGGA 334 (338)
T ss_dssp -----------
T ss_pred HhhCCCCCCCC
Confidence 99999997653
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.05 E-value=1.7e-09 Score=120.90 Aligned_cols=117 Identities=14% Similarity=0.178 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLE----------------ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1093)
..+..+|..++..|+|++|+..|++++. .+|.+..++..+|.+++..|+|++|+.+|++++..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4577889999999999999999999988 566667778888888888888888888888888888
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001357 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1093)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1093)
|.+ ..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++
T Consensus 304 p~~-~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 304 PSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred chh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 877 66777888888888888888888888888888888777777777777666
No 187
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.04 E-value=6e-10 Score=104.61 Aligned_cols=112 Identities=15% Similarity=0.084 Sum_probs=75.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1093)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 220 (1093)
.+.|++|+..|++++..+|+++.+|+.+|.++...++++.+..... .+++|+..|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi~~l 69 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHHHHH
Confidence 3456777777777777777777777777777766665542222110 145666666
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhh--------HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001357 221 QRALQLDPENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (1093)
Q Consensus 221 ~~al~~~p~~~~a~~~la~~~~~~~~--------~~~~~~Al~~~~~al~~~p~~~~~~~~la~~ 277 (1093)
+++++++|++..+|+.+|.+|...|. .+++++|+.+|+++++++|++......+..+
T Consensus 70 e~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 66666666666666666666666541 1349999999999999999998777766543
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.03 E-value=4.2e-10 Score=103.02 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001357 108 EHFILATQYYNKASRI---DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 184 (1093)
|++.+|+.+|++++.. +|.++.+++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555788888888887 5777778888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCC
Q 001357 185 YKRALQVHPSC 195 (1093)
Q Consensus 185 ~~~al~~~p~~ 195 (1093)
|++++...|.+
T Consensus 84 ~~~al~~~p~~ 94 (117)
T 3k9i_A 84 LLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHhCCCc
Confidence 88888888777
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.02 E-value=4e-10 Score=103.13 Aligned_cols=95 Identities=15% Similarity=0.236 Sum_probs=78.5
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHH
Q 001357 140 AKGEVEQASSAFKIVLEA---DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1093)
Q Consensus 140 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A 216 (1093)
..|++++|+..|++++.. +|+++.+++.+|.++...|+|++|+..|++++..+|++ +.+++.+|.++..+|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHH
Confidence 367888899999999888 58888889999999999999999999999999999988 77788899999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHH
Q 001357 217 RQAFQRALQLDPENVEALV 235 (1093)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~ 235 (1093)
+..|++++...|+++....
T Consensus 81 ~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 9999999988888876543
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.98 E-value=3.4e-09 Score=102.90 Aligned_cols=141 Identities=11% Similarity=0.047 Sum_probs=118.5
Q ss_pred HHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 001357 629 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQVQ 702 (1093)
Q Consensus 629 ~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~~~ 702 (1093)
.++..+|.+ |... |++++|+.+|.+++...|.. ..++..+|.++...|++++|+.+|++++
T Consensus 10 ~~~~~l~~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 10 RAFGNLGNT-HYLL------------GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHh------------cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456678888 8887 99999999999999876542 2478899999999999999999999999
Q ss_pred HHhcCCCC-CCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 001357 703 EAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAI 777 (1093)
Q Consensus 703 ~~~p~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~l~~la~~~~~~g~~~~A~~~~~~al 777 (1093)
...+.... .....++.++|.++...|++++|+.+|++++...+...+ +.++..+|.++...|++++|..++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 98753211 123678899999999999999999999999988654444 5678899999999999999999999999
Q ss_pred HhCCC
Q 001357 778 HLAPS 782 (1093)
Q Consensus 778 ~~~P~ 782 (1093)
.+...
T Consensus 157 ~~~~~ 161 (164)
T 3ro3_A 157 EISRE 161 (164)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 87653
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.97 E-value=3.7e-09 Score=118.27 Aligned_cols=124 Identities=21% Similarity=0.215 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------hCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQ----------------VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~----------------~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (1093)
...+..+|..++..|+|++|+..|++++. ..|.. ..+++.+|.|+..+|++++|+..|+++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA-LSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45688999999999999999999999998 55555 67889999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 001357 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (1093)
Q Consensus 226 ~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (1093)
++|+++.+++.+|.++...|+ +++|+..|+++++++|.+..++..++.++...+++.++..
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~---~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKE---YDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999998888888877766554
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.93 E-value=5.1e-09 Score=101.69 Aligned_cols=136 Identities=17% Similarity=0.157 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCCh------hhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP------STWVGKGQLLLAKGEVEQASSAFKIV 154 (1093)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~------~~~~~~a~~~~~~g~~~~A~~~~~~a 154 (1093)
....++..+|.+|...|+.. +|+..|.+++...+... .++..+|.++...|++++|+..|+++
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFR-----------DAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556677777777776655 66666666665544322 35666777777777777777777777
Q ss_pred HHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 155 LEADRDN------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-----PGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1093)
Q Consensus 155 l~~~p~~------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (1093)
+...+.. ..++..+|.++...|++++|+.++++++...+.. ...++..+|.++...|++++|+..|.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6654322 4456677777777777777777777776553211 2344566666777777777777777666
Q ss_pred HhhC
Q 001357 224 LQLD 227 (1093)
Q Consensus 224 l~~~ 227 (1093)
+.+.
T Consensus 156 ~~~~ 159 (164)
T 3ro3_A 156 LEIS 159 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.85 E-value=2e-08 Score=91.33 Aligned_cols=101 Identities=20% Similarity=0.167 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHH
Q 001357 659 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738 (1093)
Q Consensus 659 ~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 738 (1093)
.|+..|++++..+|+++.+++.+|.++...|++++|+..|++++...| ..+.+|+++|.+|...|++++|+..|+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----TYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467778888888888888888888888888888888888888888877 667788888888888888888888888
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhc
Q 001357 739 NCLRKFYYNTDAQILLYLARTHYEAE 764 (1093)
Q Consensus 739 ~al~~~~~~~~~~~l~~la~~~~~~g 764 (1093)
+++...+...+...+..+...+...+
T Consensus 78 ~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 78 SGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHHhc
Confidence 88877665555555555544444433
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.80 E-value=3.6e-08 Score=89.59 Aligned_cols=83 Identities=11% Similarity=0.028 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
.|+..|.+++..+|.++.+++.+|.+++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred CCC
Q 001357 192 HPS 194 (1093)
Q Consensus 192 ~p~ 194 (1093)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 664
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.75 E-value=6.1e-08 Score=83.49 Aligned_cols=83 Identities=22% Similarity=0.503 Sum_probs=49.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1093)
++.+++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|.+ ..++..+|.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHH
Confidence 344555666666666666666666666666666666666666666666666666666666666666655 4455555555
Q ss_pred HHHc
Q 001357 207 RYKL 210 (1093)
Q Consensus 207 ~~~~ 210 (1093)
+..+
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.73 E-value=6.9e-09 Score=93.52 Aligned_cols=94 Identities=13% Similarity=0.239 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----hHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-----PGAIRLG 202 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~~ 202 (1093)
+..++.+|.+++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|++ ...+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777765 1344566
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 001357 203 IGLCRYKLGQLGKARQAFQ 221 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~ 221 (1093)
+|.++..+|+++.|+..|+
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 6777766666665555443
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.72 E-value=9.5e-08 Score=82.26 Aligned_cols=84 Identities=27% Similarity=0.519 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
.++.+++.+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++.++|++..++..++.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 356778888888888888888888888888888887 6678888888888888888888888888888888888888887
Q ss_pred HHHHh
Q 001357 240 MDLQA 244 (1093)
Q Consensus 240 ~~~~~ 244 (1093)
++...
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
No 198
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.71 E-value=6.1e-07 Score=104.09 Aligned_cols=178 Identities=13% Similarity=0.078 Sum_probs=147.2
Q ss_pred HHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCC-
Q 001357 595 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS- 673 (1093)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~- 673 (1093)
++..+...+.+.|++++|..+|..+...+-.++..++..|..+ |....... .....+..+.|..+|..+....-.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~-c~~~~~~~---~~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYV-CSLAEAAT---ESSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHH-HTTCCCCS---SSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHhCCchh---hhhhcchHHHHHHHHHHHHHhCCCC
Confidence 4556677889999999999999999988777788888877766 54331110 001127899999999999887644
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHH
Q 001357 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 753 (1093)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 753 (1093)
|..+++.+...|++.|++++|..+|.++....- ..+..+|..+-..|.+.|++++|..+|+.+... .-.++..++
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~----~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty 178 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI----QPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPEL 178 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHH
Confidence 888999999999999999999999999988652 136788999999999999999999999999875 467789999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 001357 754 LYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (1093)
Q Consensus 754 ~~la~~~~~~g~~~~A~~~~~~al~~~P 781 (1093)
..|..+|.+.|+.++|..+|+++....-
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll~~Mr~~g~ 206 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTLQRLRDLVR 206 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999887543
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.2e-08 Score=91.98 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHH
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEAL 234 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~ 234 (1093)
++.+++.+|.+++..|+|++|+..|++++..+|.+ ..+++.+|.++..+|++++|+..|.+++.++|++ ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN-PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 45678888999999999999999999999999988 7778889999999999999999999999999988 7778
Q ss_pred HHHHHHHHHhhh
Q 001357 235 VALAVMDLQANE 246 (1093)
Q Consensus 235 ~~la~~~~~~~~ 246 (1093)
+.++.++...|.
T Consensus 82 ~~~~~~~~~~~~ 93 (111)
T 2l6j_A 82 YRLELAQGAVGS 93 (111)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 888887777765
No 200
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.69 E-value=1.3e-06 Score=101.29 Aligned_cols=184 Identities=11% Similarity=0.002 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCChhHHHHhhhhhhcc---------cchHHHHHHHHHhhhcCCCCChHH
Q 001357 561 AYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKN---------DDWVKAKETFRAASDATDGKDSYA 630 (1093)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~l~~~~~~d~~~ 630 (1093)
.+..+...+.+.|++++|+.+|+++...+ +.+..+|..+..++... +..+.|..+|..+....-.++..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555677778888888888888887764 23455666666655543 457899999999999887889999
Q ss_pred HHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCC
Q 001357 631 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 709 (1093)
Q Consensus 631 ~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 709 (1093)
+..|... |... |++++|..+|..+....-. +..+++.+...|++.|++++|..+|..+.+..-
T Consensus 108 yn~lI~~-~~~~------------g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~--- 171 (501)
T 4g26_A 108 FTNGARL-AVAK------------DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV--- 171 (501)
T ss_dssp HHHHHHH-HHHH------------TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHH-HHhc------------CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC---
Confidence 9999999 9999 9999999999999887533 788999999999999999999999999998753
Q ss_pred CCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Q 001357 710 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762 (1093)
Q Consensus 710 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~ 762 (1093)
..+..+|..+..+|.+.|++++|..+|+++-... ..++..++..+-..+..
T Consensus 172 -~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 172 -VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHS
T ss_pred -CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhc
Confidence 2467899999999999999999999999987653 45566666655555443
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.68 E-value=7.3e-08 Score=84.94 Aligned_cols=89 Identities=11% Similarity=0.117 Sum_probs=65.4
Q ss_pred hCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC
Q 001357 670 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (1093)
Q Consensus 670 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 749 (1093)
.+|+++.+++.+|.++...|++++|+..|+++++..| .++.+|+++|.+|...|++++|+..|++++...+...+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDP-----DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 3678888888888888888888888888888888887 66778888888888888888888888888877655555
Q ss_pred HHHHHHHHHHHHhh
Q 001357 750 AQILLYLARTHYEA 763 (1093)
Q Consensus 750 ~~~l~~la~~~~~~ 763 (1093)
......+...+...
T Consensus 77 ~~~~~~l~~~l~~~ 90 (100)
T 3ma5_A 77 QKDLSELQDAKLKA 90 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHc
Confidence 55555555444443
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.64 E-value=7.2e-08 Score=84.96 Aligned_cols=71 Identities=21% Similarity=0.252 Sum_probs=51.1
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1093)
+|.++.+|+.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.+.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 57777777777777777777777777777777777777777777777777777777777777777766543
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.63 E-value=4.4e-07 Score=85.29 Aligned_cols=120 Identities=14% Similarity=0.086 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----hcCH
Q 001357 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNF 730 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~----~g~~ 730 (1093)
+++++|+.+|+++.+..+.. +. +|.+|...+.+++|+.+|+++.+.. ++.++++||.+|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-------~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACELN-------SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHcCCCCCccH
Confidence 88999999999999987444 44 9999999999999999999999863 78999999999998 8999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhCCCCcchhhHHH
Q 001357 731 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (1093)
Q Consensus 731 ~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la 791 (1093)
.+|+.+|+++... .++..++.||.+|.. .+++.+|+.+|+++.+.. ++...++|+
T Consensus 78 ~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 78 RKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 9999999999975 568999999999999 899999999999999884 455555554
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.58 E-value=1e-07 Score=83.81 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
+.+|.+++..|++++|+..|++++..+|.++. +++.+|.++...|++++|+..|++++..+|++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 44566666666666666666666666666666 66666666666666666666666666666665
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.56 E-value=1.8e-06 Score=92.79 Aligned_cols=144 Identities=16% Similarity=0.123 Sum_probs=109.3
Q ss_pred HHhcCCCChhhH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-------HHHHH-HHH
Q 001357 120 ASRIDMHEPSTW--VGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY-------SDSLE-FYK 186 (1093)
Q Consensus 120 a~~~~p~~~~~~--~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~-------~~Al~-~~~ 186 (1093)
+...-|.++.+| +.+|..++..+. +.+|+.+|+++++.+|+++.++..++.++.....+ ..++. .+.
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 334457766655 567888887765 58999999999999999999999888888632111 11111 111
Q ss_pred H--HHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC
Q 001357 187 R--ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1093)
Q Consensus 187 ~--al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~ 264 (1093)
. ++...|.. +.++..++..++..|+++.|+..+++++.++| +..++..+|.++...|+ +++|+..|.+++.++
T Consensus 266 a~~a~~~~~~~-a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~---~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 266 NIVTLPELNNL-SIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGM---NREAADAYLTAFNLR 340 (372)
T ss_dssp HHHTCGGGTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred HHHhcccCCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcC
Confidence 1 12345666 67778888888888999999999999999997 46788889999999998 999999999999999
Q ss_pred CCcH
Q 001357 265 PYCA 268 (1093)
Q Consensus 265 p~~~ 268 (1093)
|..+
T Consensus 341 P~~~ 344 (372)
T 3ly7_A 341 PGAN 344 (372)
T ss_dssp CSHH
T ss_pred CCcC
Confidence 9876
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.54 E-value=1.9e-06 Score=80.93 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSL 182 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al 182 (1093)
.+++.+|+.+|.++.... ++.+. +|.+|...+.+++|+.+|+++... .++.+++.+|.+|.. .+++.+|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 467889999999998876 44444 999999999999999999999886 589999999999998 89999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 183 EFYKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
.+|+++... .+ +..++.+|.+|.. .+++++|+.+|+++.+. .++.+...|+
T Consensus 82 ~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL--ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHHcC--CC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 999999886 34 6678899999999 89999999999999886 3455554443
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.53 E-value=2.3e-07 Score=81.50 Aligned_cols=91 Identities=19% Similarity=0.180 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001357 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1093)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1093)
.+.+|.+++..|++++|+..|++++..+|.+ .. +++.+|.++..+|++++|+..|++++.++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 3568889999999999999999999999999 66 89999999999999999999999999999999887743
Q ss_pred hhhHHhHHHHHHHHHHHHHhCCCc
Q 001357 244 ANEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
+. +.+++..|.++...+|.+
T Consensus 75 -~~---~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 -KM---VMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -HH---HHHHHHHHCCTTHHHHCC
T ss_pred -HH---HHHHHHHHHHHhccCccc
Confidence 22 777888888887777654
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.48 E-value=2.4e-05 Score=80.36 Aligned_cols=106 Identities=9% Similarity=-0.002 Sum_probs=91.5
Q ss_pred CCCchHHHHHHHHHHHHh---c--C------ChHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHc-----CCHHHHHHH
Q 001357 520 LPWNKVTVLFNLARLLEQ---I--H------DTVAASVLYRLILFKYQD--YVDAYLRLAAIAKAR-----NNLQLSIEL 581 (1093)
Q Consensus 520 ~~~~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~ 581 (1093)
..|.++..++..|.++.. . | ....|...++++++++|+ +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 456788888887776533 1 3 357888999999999999 566999999999995 999999999
Q ss_pred HHHHHHHcCCC-hhHHHHhhhhhhcc-cchHHHHHHHHHhhhcCCC
Q 001357 582 VNEALKVNGKY-PNALSMLGDLELKN-DDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 582 ~~~al~~~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~~~ 625 (1093)
|++++.++|+. ..+++.+|..++.. |+++.|...+++++...|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999975 99999999999885 9999999999999998776
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.46 E-value=2.3e-06 Score=91.96 Aligned_cols=123 Identities=12% Similarity=0.051 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCH-------HHHH-HHHHH--HHHhCCCCHHHHHHHHHHHHHcCC
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV-------EQAS-SAFKI--VLEADRDNVPALLGQACVEFNRGR 177 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~-------~~A~-~~~~~--al~~~p~~~~a~~~la~~~~~~g~ 177 (1093)
+.+.+|+.+|++++.++|+++.++..++.+|+....+ -.++ ..+.. ++..+|.++.++..++..+...|+
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence 4567999999999999999999999988888632111 1111 12222 224568999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 001357 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (1093)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1093)
+++|+..+++++.++|+ ...+..+|.++...|++++|+..|.+++.++|....
T Consensus 293 ~d~A~~~l~rAl~Ln~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 293 TDESYQAINTGIDLEMS--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 99999999999999975 456788999999999999999999999999997753
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.41 E-value=1.5e-06 Score=99.74 Aligned_cols=125 Identities=13% Similarity=0.044 Sum_probs=58.4
Q ss_pred HHHcCChHHHHHHHHHHHhc-----cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCCchhhHHH
Q 001357 278 FFFTGQHFLVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-----NKPHEFIFPYYG 347 (1093)
Q Consensus 278 ~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~ 347 (1093)
+..+|+|++|+.++++++.. .+..|....++.++|.+|..+|+|++|+.++++++... +..|.....+++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33455555555555555532 22233344455555555555555555555555554321 233344444555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 348 LGQVQLKLGDFRSALTNFEKVLEI-----YPDN---CETLKALGHIYVQLGQIEKAQELLRKA 402 (1093)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~ 402 (1093)
||.+|...|++++|+.+|++++.+ .|++ ..+...++.++..++.+.+|...|.++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555443 1222 233344444444444444444444444
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.38 E-value=1.5e-06 Score=74.57 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=59.4
Q ss_pred CCCChhhHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 124 DMHEPSTWVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
+|.++..+..+|.+++..++ .++|...|++++..+|+++.+++.+|..++..|+|.+|+.++++++..+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57788888888888876655 6888888888888888888888888888888888888888888888888774
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.36 E-value=4.4e-05 Score=78.42 Aligned_cols=189 Identities=14% Similarity=0.051 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHcC---------------------CHHHHHHHHHHHHHHcCCChhHHHHhhh
Q 001357 543 AASVLYRLILFKYQDYVDAYLRLAAIAKARN---------------------NLQLSIELVNEALKVNGKYPNALSMLGD 601 (1093)
Q Consensus 543 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~ 601 (1093)
-.+.+++.++..+|++.......+..|..-. ++..|..+|.++.... +--
T Consensus 50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~---------~ra 120 (301)
T 3u64_A 50 LVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYA---------LSS 120 (301)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHH---------HHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHH---------HHH
Confidence 3456777778889988665555554443221 2334555555544321 111
Q ss_pred hhhcccchHHHH-----HHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCC--C
Q 001357 602 LELKNDDWVKAK-----ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS--N 674 (1093)
Q Consensus 602 ~~~~~g~~~~A~-----~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~ 674 (1093)
+......+.+++ ..+..++......+..+++..|.+ +...+...+.. -...+....|...++++++++|+ +
T Consensus 121 L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~-~ss~a~~~~gg-~~Al~~l~~A~a~lerAleLDP~~~~ 198 (301)
T 3u64_A 121 LETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTG-YVAAFALTPLG-SALPDTVHAAVMMLERACDLWPSYQE 198 (301)
T ss_dssp HHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHH-HHHHHTTSCTT-SCCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred HHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHH-HHHHHhcCCCC-hHHHHhHHHHHHHHHHHHHhCCCccc
Confidence 111112222222 234455555545577777777766 55443321110 01126778888999999999998 6
Q ss_pred HHHHHHHHHHHHhc-----CCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH-hcCHHHHHHHHHHHHHhhcC
Q 001357 675 LYAANGAGVVLAEK-----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA-QGNFALAMKMYQNCLRKFYY 746 (1093)
Q Consensus 675 ~~a~~~la~~~~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~ 746 (1093)
..++..+|.+|... |+.++|..+|++++++.|+ .+..+++.+|..++. +|++..|..++++++..-+.
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~----~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA----HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT----TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC----CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 66888888888874 8888888888888888872 247888888888877 48888888888888876433
No 213
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.35 E-value=3.2e-06 Score=97.13 Aligned_cols=129 Identities=12% Similarity=0.014 Sum_probs=95.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC---CCHH
Q 001357 348 LGQVQLKLGDFRSALTNFEKVLEI-----YPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKI-----DP---RDAQ 411 (1093)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-----~p---~~~~ 411 (1093)
.+..+...|+|++|+.++++++.+ .|++ ..++.++|.+|..+|++++|+.++++++.+ .| ....
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 344455677788888877777765 2333 456777888888888888888888888764 23 3456
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 412 AFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1093)
Q Consensus 412 ~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 476 (1093)
.+.+||.+| .+|++++|..+|++++.+....-.+.. ..+..+++.++..++.+.+|...|.++.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888 888888888888888888776533222 46677889999999999999999998865
No 214
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.32 E-value=3.6e-06 Score=74.41 Aligned_cols=84 Identities=12% Similarity=0.192 Sum_probs=74.1
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCC-----CCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchh
Q 001357 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-----TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (1093)
Q Consensus 713 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 787 (1093)
++.-.+.+|..++..|+|..|+.+|+.|+...+.. ..+.++..||.++++.|+++.|+.++++++.+.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 46678899999999999999999999999987433 2388999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 001357 788 FDAGVAMQKF 797 (1093)
Q Consensus 788 ~~la~~~~~~ 797 (1093)
.|++. +...
T Consensus 84 ~n~~~-~~~~ 92 (104)
T 2v5f_A 84 GNLKY-FEYI 92 (104)
T ss_dssp HHHHH-HHHH
T ss_pred hhHHH-HHHH
Confidence 99985 4443
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.27 E-value=6.1e-06 Score=76.40 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYKRALQVH-PSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1093)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~Al~~~~~al~~~-p~~~~~~~~~la~~~~~~g~~~~A~~~~ 220 (1093)
..+...|...+..+|.+..+.+.+|.++.+.+ ++.+++.+|+.+++.+ |......+|.+|..++++|+|++|+.++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34455555555555555666666666666655 4446666666666655 4333455666666666666666666666
Q ss_pred HHHHhhCCCcHHHHHHHH
Q 001357 221 QRALQLDPENVEALVALA 238 (1093)
Q Consensus 221 ~~al~~~p~~~~a~~~la 238 (1093)
+++++++|+|..+....-
T Consensus 95 ~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 95 RGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHCTTCHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHH
Confidence 666666666655544433
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.22 E-value=8.2e-06 Score=69.92 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001357 158 DRDNVPALLGQACVEFNRGR---YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~---~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1093)
+|+++..+..+|.+++..++ ..+|..++++++..+|++ +.+++.+|..++..|++.+|+.+|++++..+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-EAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68889999999999877666 789999999999999999 7778889999999999999999999999988873
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.15 E-value=1.8e-05 Score=73.33 Aligned_cols=88 Identities=13% Similarity=0.185 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG---EVEQASSAFKIVLEAD-R-DNVPALLGQACVEFNRGRYSDSL 182 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~a~~~la~~~~~~g~~~~Al 182 (1093)
+....+...|.+.+..+|.+..+.+..|.++...+ ++++++.+|+.++..+ | .+..+++.+|..+++.|+|++|+
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 44557888888888889999999999999999998 6779999999999998 7 56899999999999999999999
Q ss_pred HHHHHHHHhCCCC
Q 001357 183 EFYKRALQVHPSC 195 (1093)
Q Consensus 183 ~~~~~al~~~p~~ 195 (1093)
.+++.+++..|++
T Consensus 92 ~y~~~lL~ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHhcCCCC
Confidence 9999999999999
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.97 E-value=5.9e-05 Score=66.46 Aligned_cols=77 Identities=21% Similarity=0.216 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHP------SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1093)
+.-.+.+|..++..|+|..|+.+|+.++...+ .....++..+|.|++++|+++.|+..+++++.++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 44556777777777777777777777776531 123567778888888888888888888888888888877766
Q ss_pred HHH
Q 001357 236 ALA 238 (1093)
Q Consensus 236 ~la 238 (1093)
.++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 665
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.79 E-value=0.00014 Score=82.12 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=54.1
Q ss_pred hcCCHHHHHHHHHHHHHhc-----CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHH
Q 001357 317 SKGDYEKAGLYYMASVKEI-----NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------YPDNCETLKALG 383 (1093)
Q Consensus 317 ~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la 383 (1093)
..|+|++|+.+|++++... +..|....++.++|.+|..+|+|++|+.++++++.+ +|+....+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4466677777776666522 233444555666666666667777776666666654 222334566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 001357 384 HIYVQLGQIEKAQELLRKAAKI 405 (1093)
Q Consensus 384 ~~~~~~g~~~~A~~~l~~~l~~ 405 (1093)
.+|..+|++++|+.+|++++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 6666666666666666666653
No 220
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.77 E-value=0.11 Score=62.99 Aligned_cols=243 Identities=13% Similarity=0.149 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhc-CC--h--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC------Ch-
Q 001357 526 TVLFNLARLLEQIHDTVAASVLYRLILFKY-QD--Y--VDAYLRLAAIAKARNNLQLSIELVNEALKVNGK------YP- 593 (1093)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~--~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~- 593 (1093)
.+...+|.+ ..|+.++++..+...+... .+ + ..+.+.+|.++...+ .++..++...+..... +.
T Consensus 377 sA~aSLGlI--h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ 452 (963)
T 4ady_A 377 TATASLGVI--HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDV 452 (963)
T ss_dssp HHHHHHHHH--TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHH
T ss_pred HHHHHhhhh--ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHH
Confidence 344444444 4467777777776655421 11 2 335555555554433 4677777776654430 11
Q ss_pred ---hHHHHhhhhhhcccchHHHHHHHHHhhhcCCC-CChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHh
Q 001357 594 ---NALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 669 (1093)
Q Consensus 594 ---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 669 (1093)
.+...+|.++...++ +++...+..++..... ....+-++||.+ |.-. |+.+....++.-+..
T Consensus 453 ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli-~vGT------------gn~~ai~~LL~~~~e 518 (963)
T 4ady_A 453 LLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLC-MLGT------------GKPEAIHDMFTYSQE 518 (963)
T ss_dssp HHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTC------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hccc------------CCHHHHHHHHHHHhc
Confidence 244466666666554 3455666665553221 011344556655 5444 444444444444444
Q ss_pred hCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHH----HHHHHHHHhcCHHHHHHHHHHHHHhhc
Q 001357 670 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWI----NLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1093)
Q Consensus 670 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~----~lg~~~~~~g~~~~A~~~~~~al~~~~ 745 (1093)
...+++.-...+|..+...|+.+.+-.+++.+... .++.+.+ .+|..|...|+......++..+...
T Consensus 519 ~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-- 589 (963)
T 4ady_A 519 TQHGNITRGLAVGLALINYGRQELADDLITKMLAS-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-- 589 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--
T ss_pred cCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--
Confidence 33334433444555555677777777776666543 2334433 4566677888865444477666653
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Q 001357 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (1093)
Q Consensus 746 ~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~ 797 (1093)
...++.-...+|..+...|+.+.+.+++..+.+ -.|+.+++..++++.-.
T Consensus 590 ~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli 639 (963)
T 4ady_A 590 SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIA 639 (963)
T ss_dssp SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHh
Confidence 122233333344444445555444444433332 24677888887765443
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.77 E-value=0.00019 Score=63.73 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHHhC-CCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD---SLEFYKRALQVH-PSCPGAIRLGIGLCRYKLGQLGKARQA 219 (1093)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~---Al~~~~~al~~~-p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (1093)
...+...|...+..++.+..+.+.+|.++.+..+... ++.+++.++..+ |...-..++.+|..++++|+|..|+.+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4455556666666666677777777777777766555 777777777665 433456677777778888888888888
Q ss_pred HHHHHhhCCCcHHHHHHHHHH
Q 001357 220 FQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 220 ~~~al~~~p~~~~a~~~la~~ 240 (1093)
++.+|+..|+|..+......+
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHH
Confidence 888888888777765544433
No 222
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.70 E-value=0.00016 Score=81.61 Aligned_cols=104 Identities=8% Similarity=0.020 Sum_probs=85.4
Q ss_pred HcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcC
Q 001357 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539 (1093)
Q Consensus 460 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g 539 (1093)
..|+|++|+.++++++.... .. .-..+|....++.++|.+|..+|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~--~~---------------------------------lg~~Hp~~a~~~~nLa~~y~~~g 354 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMS--SV---------------------------------FEDSNVYMLHMMYQAMGVCLYMQ 354 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHT--TT---------------------------------BCTTSHHHHHHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHhh--Cc---------------------------------cChhchHHHHHHHHHHHHHHhhc
Confidence 46899999999999998421 00 11156778899999999999999
Q ss_pred ChHHHHHHHHHHHHh--------cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cCCChhHHHH
Q 001357 540 DTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALSM 598 (1093)
Q Consensus 540 ~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~ 598 (1093)
++++|+.++++++.. +|+....+++||.+|..+|++++|..+|++++.+ .|++|.+...
T Consensus 355 ~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 355 DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999973 5566778999999999999999999999999886 4777765543
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.68 E-value=0.00019 Score=81.13 Aligned_cols=94 Identities=14% Similarity=0.091 Sum_probs=53.7
Q ss_pred HHHcCChHHHHHHHHHHHhcc-----CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCCchhhHHH
Q 001357 278 FFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-----NKPHEFIFPYYG 347 (1093)
Q Consensus 278 ~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~ 347 (1093)
+...|+|++|+.++++++... +.+|....++.++|.+|..+|+|++|+.++.+++... +..|.....+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445566666666666666432 2233444556666666666666666666666665421 234444555566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 348 LGQVQLKLGDFRSALTNFEKVLEI 371 (1093)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~ 371 (1093)
+|.+|...|++++|+.+|++++.+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 666666666666666666665553
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.67 E-value=0.00017 Score=64.13 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHH---HHHHHHHHHHhhcCC--CCHHHHHHHHHHHHhhccHH
Q 001357 693 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL---AMKMYQNCLRKFYYN--TDAQILLYLARTHYEAEQWQ 767 (1093)
Q Consensus 693 ~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~~~~--~~~~~l~~la~~~~~~g~~~ 767 (1093)
.+...|.......+ ....+.|++||++....+... ++.+++..+.. .. ..-..+|+||.++++.|+|.
T Consensus 19 ~~~~~y~~e~~~~~-----~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHSC-----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccCC-----CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHH
Confidence 34445555555443 467788888888887776665 88888877664 21 23678999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcchhhHHHH
Q 001357 768 DCKKSLLRAIHLAPSNYTLRFDAGV 792 (1093)
Q Consensus 768 ~A~~~~~~al~~~P~~~~~~~~la~ 792 (1093)
.|+++++.+++..|+|..+.-....
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999665444433
No 225
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.63 E-value=0.00046 Score=78.02 Aligned_cols=107 Identities=5% Similarity=-0.094 Sum_probs=86.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHH
Q 001357 456 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535 (1093)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 535 (1093)
.-+...|++++|+..+++++.... ......+|....++.++|.+|
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~-----------------------------------~~lg~~h~~~~~~~~~L~~~y 339 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNS-----------------------------------ERLPDINIYQLKVLDCAMDAC 339 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSS-----------------------------------CCCCTTSHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhcc-----------------------------------CcCCccchHHHHHHHHHHHHH
Confidence 345578999999999999997421 011125677888999999999
Q ss_pred HhcCChHHHHHHHHHHHHh--------cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cCCChhHHH
Q 001357 536 EQIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALS 597 (1093)
Q Consensus 536 ~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 597 (1093)
..+|++++|+.++++++.. +|.....+++||.+|..+|++++|..++++++.+ .|++|.+..
T Consensus 340 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 340 INLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 9999999999999999973 4556778999999999999999999999999876 477766543
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.36 E-value=0.0021 Score=58.15 Aligned_cols=108 Identities=15% Similarity=0.065 Sum_probs=93.2
Q ss_pred CCCchHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHhcCC--------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 520 LPWNKVTVLFNLARLLEQIHDT------VAASVLYRLILFKYQD--------YVDAYLRLAAIAKARNNLQLSIELVNEA 585 (1093)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a 585 (1093)
..|.++..|......+...|++ +.-+..|++++..-|. ++..|...+.. ...++.+.|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5788999999999999999999 8889999999987764 45666666655 5668999999999999
Q ss_pred HHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCCh
Q 001357 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 628 (1093)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~ 628 (1093)
+.+....+.+|...+.+..++|+...|..++.+++...|.+..
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 9998888899999999999999999999999999999887444
No 227
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.29 E-value=0.6 Score=56.55 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 001357 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1093)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1093)
|..+..|+.++++.+.+...|.+++. ..+...-+.++..+...+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~ 276 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSA 276 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhccc
Confidence 56688999999999999999999874 456666666776665543
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.27 E-value=0.0011 Score=61.67 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCC-
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------VPALLGQACVEFNRGRYSDSLEFYKRALQVH---PSC- 195 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~---p~~- 195 (1093)
.+++.....++..|.|+.|+-+...++....++ ..+++.+|.+++..|+|..|...|++++... +..
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455666667777777777777777655443211 2356777777777777777777777765431 111
Q ss_pred --------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001357 196 --------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1093)
Q Consensus 196 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1093)
...+.+.++.||..+|++.+|+..++.+-. .-..+.....||.+|
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 135778888888888888888888765321 123566666666654
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.21 E-value=0.0076 Score=54.56 Aligned_cols=105 Identities=12% Similarity=0.157 Sum_probs=48.4
Q ss_pred cCCCChhhHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 123 IDMHEPSTWVGKGQLLLAKGEV------EQASSAFKIVLEADRDN--------VPALLGQACVEFNRGRYSDSLEFYKRA 188 (1093)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1093)
+.|++++.|.......-..|+. ++-+..|++++..-|.. +..|+..|.. ...++.+.|..+|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 3456666666655555555655 55555555555554432 2223333322 2334444444444444
Q ss_pred HHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001357 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (1093)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1093)
+..+... +.+|+..|..-.++|+...|+..+.+++.+.|.
T Consensus 87 ~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 87 RANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 4443333 444444444444444444444444444444443
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.16 E-value=0.0082 Score=54.13 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=65.8
Q ss_pred CchhHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchh
Q 001357 712 QMPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (1093)
Q Consensus 712 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~-~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 787 (1093)
..+.+.|++||++....+ ..+++.+++..+.. .+. .-..+|+||.++++.|+|.+|+++.+.+++..|+|..+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 478999999999998765 45799999998885 343 378999999999999999999999999999999996544
Q ss_pred hHHHH
Q 001357 788 FDAGV 792 (1093)
Q Consensus 788 ~~la~ 792 (1093)
-....
T Consensus 115 ~Lk~~ 119 (144)
T 1y8m_A 115 ALKSM 119 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.06 E-value=0.013 Score=52.85 Aligned_cols=81 Identities=10% Similarity=0.065 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001357 159 RDNVPALLGQACVEFNRGRY---SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1093)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~---~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1093)
..++.+.+.+|.++.+..+. .+++.+++.++...|...-..++.+|..++++|+|..|+.+.+.+|+..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34677777777777777654 467777777777777666777777888888888888888888888888888777655
Q ss_pred HHHH
Q 001357 236 ALAV 239 (1093)
Q Consensus 236 ~la~ 239 (1093)
....
T Consensus 116 Lk~~ 119 (144)
T 1y8m_A 116 LKSM 119 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 232
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.06 E-value=0.0035 Score=58.24 Aligned_cols=138 Identities=18% Similarity=0.143 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCC------chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchh
Q 001357 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT------KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 343 (1093)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 343 (1093)
++..-...++..|.|+.|+.+...++...+.++. ...++..+|.+++..++|..|...|.++++....-+....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444556667778888888888777765543332 2457888999999999999999999998763322111111
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001357 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1093)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~ 420 (1093)
+...++. ...+.. ... .+...++.+.++.||...+++.+|+..++.+-. ....+.+...||.+|
T Consensus 102 ~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred ccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 1000000 000000 001 133556777777777777777777777665321 123456666666654
No 233
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.04 E-value=0.19 Score=55.06 Aligned_cols=171 Identities=13% Similarity=0.085 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhh-hHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHH
Q 001357 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYAD-VRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1093)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~ 119 (1093)
...+.+|..|.++|++++...++...... ++. ++..-..+...|...+....... +..++--...++-
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~kak~~k~v~~l~~~~~~~~~~~------~~~~~~~~~~~~~ 88 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPF-----LSSISKAKAAKLVRSLVDMFLDMDAGT------GIEVQLCKDCIEW 88 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTG-----GGGSCHHHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHHhchHHHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHH
Confidence 46899999999999999999999986432 322 22233445556666665543322 2223333333333
Q ss_pred HHhcCCCChhhH------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001357 120 ASRIDMHEPSTW------VGKGQLLLAKGEVEQASSAFKIVLEADRD------NVPALLGQACVEFNRGRYSDSLEFYKR 187 (1093)
Q Consensus 120 a~~~~p~~~~~~------~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1093)
+- +.-..| ..+|..|+..|+|.+|..++.+++..... -...+.....+|...+++.++...|.+
T Consensus 89 a~----~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 89 AK----QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HH----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 32 222233 26899999999999999999998875221 145677788889999999999999998
Q ss_pred HHHhC------CCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Q 001357 188 ALQVH------PSCPGAIRLGIGLCRY-KLGQLGKARQAFQRALQL 226 (1093)
Q Consensus 188 al~~~------p~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 226 (1093)
+.... |...+.+...-|..+. ..++|..|...|-.++..
T Consensus 165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 86543 2223455666788888 899999999999888754
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.02 E-value=0.005 Score=54.71 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=65.8
Q ss_pred CchhHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchh
Q 001357 712 QMPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (1093)
Q Consensus 712 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~-~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 787 (1093)
..+.+.|++||++.+..+ ...++.+++..++. .+. .-..+++||.++++.|+|..|+++.+.+++..|+|..+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 368999999999998764 45799999998876 332 378999999999999999999999999999999996654
Q ss_pred hHHHH
Q 001357 788 FDAGV 792 (1093)
Q Consensus 788 ~~la~ 792 (1093)
-....
T Consensus 116 ~Lk~~ 120 (134)
T 3o48_A 116 ALKSM 120 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.90 E-value=0.018 Score=51.22 Aligned_cols=82 Identities=10% Similarity=0.083 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 001357 160 DNVPALLGQACVEFNRGRY---SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1093)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~---~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1093)
-++.+.+.+|.++.+..+. ..++.+++.+++.+|...-..++.+|..++++|+|..|+.+.+.+++..|+|..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3567778888888777654 4678888888887876667778888888888888888888888888888888877665
Q ss_pred HHHHH
Q 001357 237 LAVMD 241 (1093)
Q Consensus 237 la~~~ 241 (1093)
...+.
T Consensus 118 k~~Ie 122 (134)
T 3o48_A 118 KSMVE 122 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 236
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.57 E-value=0.19 Score=54.98 Aligned_cols=264 Identities=11% Similarity=0.059 Sum_probs=150.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChH-----HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHcCCChhHH-
Q 001357 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-----DAYLRLAAIAKA-RNNLQLSIELVNEALKVNGKYPNAL- 596 (1093)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~- 596 (1093)
.-.+.+.+|.+|...|++++-..++.......+..+ .....+...+.. -+..+.-+.++..+++...+....|
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999888877654333322 222233333332 2445555666666665443332222
Q ss_pred -----HHhhhhhhcccchHHHHHHHHHhhhcCCCCC-hH----HHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q 001357 597 -----SMLGDLELKNDDWVKAKETFRAASDATDGKD-SY----ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666 (1093)
Q Consensus 597 -----~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d-~~----~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 666 (1093)
..+|.+|+..|+|.+|...+.++.......| .. .+.....+ |... +++.++...|.+
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~-~~~~------------~n~~k~k~~l~~ 164 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKT-YHAL------------SNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH-HHHh------------ccHHHHHHHHHH
Confidence 3789999999999999999998887433212 21 22223334 5555 778888888877
Q ss_pred HHhhC---CCCH----HHHHHHHHHHH-hcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHH
Q 001357 667 VIVQH---TSNL----YAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738 (1093)
Q Consensus 667 ~l~~~---p~~~----~a~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 738 (1093)
+.... +.++ .....-|.+++ ..++|..|...|-.+.+.+.....+....+...++.|-+-.+...+--....
T Consensus 165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~ 244 (394)
T 3txn_A 165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVS 244 (394)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhc
Confidence 75532 1222 22334588888 8999999999999998777533222222333344555445454322222221
Q ss_pred -HHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHh
Q 001357 739 -NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTL 802 (1093)
Q Consensus 739 -~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~~~~~~ 802 (1093)
+....+ ..+....+..+..+ +..+++.....++...-..-..|+.+.-++..++.......+
T Consensus 245 ~~~~~~~-~~pei~~l~~L~~a-~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L 307 (394)
T 3txn_A 245 GKLAITY-SGRDIDAMKSVAEA-SHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNL 307 (394)
T ss_dssp SHHHHTT-CSHHHHHHHHHHHH-HHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc-CCccHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 212222 23334445555555 445666665555554333333465555556665555555443
No 237
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.15 E-value=0.35 Score=44.30 Aligned_cols=115 Identities=13% Similarity=0.128 Sum_probs=72.9
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----CCChHHHH
Q 001357 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH----PSCPGAIR 200 (1093)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~----p~~~~~~~ 200 (1093)
|..+...+.++.+++..|.|..++-.+.. -+...+.+-.+.|+...++|..|+..++..+.-. |+....
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~-- 102 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR-- 102 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH--
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc--
Confidence 55556777888889999999888876543 2457778888889999999999999999988432 332111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHH
Q 001357 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEA-LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1093)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~ 269 (1093)
+ ...-.+|.+.+. +..+|.++...|+ .++|+..|...+...|-.+.
T Consensus 103 ~--------------------~~ffvd~~DkEfFy~l~a~lltq~g~---r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 103 I--------------------QEMFVDPGDEEFFESLLGDLCTLSGY---REEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp H--------------------HTTSCCTTCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCCHHH
T ss_pred c--------------------ceeeeccchHHHHHHHHHHHHHHhcC---HHHhhhHhhhhcCCccccch
Confidence 1 001134555444 3345566666666 66677766666666665443
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.01 E-value=1.8 Score=51.63 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHH---cCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHH
Q 001357 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLA---KGEVEQASSAFKIVLEA--------DRDN----------VPALLGQA 169 (1093)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~---~g~~~~A~~~~~~al~~--------~p~~----------~~a~~~la 169 (1093)
+.|+.+|++....+|.... ++..+.+... ..+--+|+.++.+.++. .+.+ ...+...+
T Consensus 266 ~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa 344 (754)
T 4gns_B 266 DFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT 344 (754)
T ss_dssp HHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence 3678888888877775433 2222222211 12334566666665532 1222 23455667
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1093)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (1093)
..+...|+|+-|+.+.++++...|.. ...|+.|+.||..+|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPse-F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDS-FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchh-hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 77778888888888888888888888 677888888888888888888776654
No 239
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.01 E-value=0.028 Score=67.91 Aligned_cols=82 Identities=9% Similarity=-0.117 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----cCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhH
Q 001357 560 DAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 635 (1093)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~ 635 (1093)
.+|..+...+++.|+.++|..+|..+... ..-+..+|..+...|++.|++++|..+|..+...+-.+|..++..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 34444445555555555555554433211 12234444444444444444444444444444444444444444444
Q ss_pred hHHHHHH
Q 001357 636 NWNYFAA 642 (1093)
Q Consensus 636 ~~~y~~~ 642 (1093)
+. ++..
T Consensus 208 ~g-lcK~ 213 (1134)
T 3spa_A 208 QC-MGRQ 213 (1134)
T ss_dssp HH-HHHH
T ss_pred HH-HHhC
Confidence 44 4443
No 240
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.00 E-value=0.051 Score=65.73 Aligned_cols=107 Identities=8% Similarity=-0.069 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHH
Q 001357 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 753 (1093)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 753 (1093)
....++.+...|++.|++++|..+|..+.+..... ...+..+|..+...|++.|++++|..+|..+... .-.+|..+|
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG-~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH-TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC-CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHH
Confidence 34567888888888888888888887765421000 0136778888888888888888888888888765 356778888
Q ss_pred HHHHHHHHhhccH-HHHHHHHHHHHHhCCC
Q 001357 754 LYLARTHYEAEQW-QDCKKSLLRAIHLAPS 782 (1093)
Q Consensus 754 ~~la~~~~~~g~~-~~A~~~~~~al~~~P~ 782 (1093)
..+..++.+.|+. ++|.++|+++....-.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~ 233 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLK 233 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCC
Confidence 8888888888874 6788888888776443
No 241
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.69 E-value=3.2 Score=48.49 Aligned_cols=142 Identities=8% Similarity=-0.040 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHH
Q 001357 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1093)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~ 121 (1093)
..+.-|...++.|++..+..+...+.+-.. ...+.+..+..+... .....+...+
T Consensus 8 ~~~~~a~~a~~~~~~~~~~~l~~~l~~~pL--------------~~yl~y~~l~~~l~~-----------~~~~ev~~Fl 62 (618)
T 1qsa_A 8 SRYAQIKQAWDNRQMDVVEQMMPGLKDYPL--------------YPYLEYRQITDDLMN-----------QPAVTVTNFV 62 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSGGGTTSTT--------------HHHHHHHHHHHTGGG-----------CCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhcCCCc--------------HHHHHHHHHHhCccc-----------CCHHHHHHHH
Confidence 457778888999999999988776533211 111222222211111 0122444556
Q ss_pred hcCCCChhhHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Q 001357 122 RIDMHEPSTWVGKGQL---LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1093)
Q Consensus 122 ~~~p~~~~~~~~~a~~---~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1093)
..+|+.|..-..+... +...+++..-+.+|.. .|.+...-...+......|+-.+|......+-...... +.
T Consensus 63 ~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~-p~ 137 (618)
T 1qsa_A 63 RANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ-PN 137 (618)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC-CT
T ss_pred HHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-cH
Confidence 6678887665444333 3346677766665543 37777777777777888999888888777766555433 33
Q ss_pred HHHHHHHHHHHcCCH
Q 001357 199 IRLGIGLCRYKLGQL 213 (1093)
Q Consensus 199 ~~~~la~~~~~~g~~ 213 (1093)
.+-.+-..+...|.+
T Consensus 138 ~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 138 ACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHCCCC
Confidence 334444444444433
No 242
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.05 E-value=2.1 Score=39.36 Aligned_cols=99 Identities=16% Similarity=0.091 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-------------- 371 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------------- 371 (1093)
+.-..++.+++-.|.|..++-.+. .-+.+.+.+.-+.||.+..+|..|+.+++.++.-
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~--------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ 105 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLH--------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE 105 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHH--------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred HHHhhhhhhhhhcchHhHHHHHHH--------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence 334445555556666665554442 2233444555566666666666666666666621
Q ss_pred ---CCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001357 372 ---YPDNCE-TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (1093)
Q Consensus 372 ---~p~~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 412 (1093)
+|.+-+ .+..+|.++.+.|+.++|+.+|.......|-.+.+
T Consensus 106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 233433 55677888888888888888888888877754433
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.13 Score=61.36 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1093)
..+...+..+...|+|+-|+.+.++++...|....+|+.++.+|..+|+|+.|+-.+..+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 356667888999999999999999999999999999999999999999999999776543
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.13 E-value=11 Score=43.88 Aligned_cols=398 Identities=9% Similarity=-0.046 Sum_probs=210.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH--HHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR--LGIGLC 206 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~--~~la~~ 206 (1093)
...+..+...+..|++..+..+...+ ...|- ..++....+....+.. .-.-+...+..+|+.+..-. ...-..
T Consensus 7 ~~~~~~a~~a~~~~~~~~~~~l~~~l-~~~pL--~~yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~ 81 (618)
T 1qsa_A 7 RSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPL--YPYLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRFVNE 81 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTT--HHHHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhh-cCCCc--HHHHHHHHHHhCcccC--CHHHHHHHHHHCCCChhHHHHHHHHHHH
Confidence 34566778888889987776665432 23343 3333333333333321 11245566677888743322 222333
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1093)
+.+.+++..-+..|.. .|.+....+.++......|+ ...|......+.......+..+..+...+...|....
T Consensus 82 l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~---~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 82 LARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQ---SEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTC---HHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCH
T ss_pred HHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCH
Confidence 4456666665554443 37778777777778888887 6667777776666655556666666666665554433
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH--------------HHHH---------hcCCCCCchh
Q 001357 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM--------------ASVK---------EINKPHEFIF 343 (1093)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--------------~al~---------~~~~~~~~~~ 343 (1093)
..... .....+..|+...|..+.. .+.. ..........
T Consensus 155 ~~~~~-------------------R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~ 215 (618)
T 1qsa_A 155 LAYLE-------------------RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTR 215 (618)
T ss_dssp HHHHH-------------------HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHH
T ss_pred HHHHH-------------------HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhH
Confidence 22111 1111222222222211111 1110 0000011111
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001357 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419 (1093)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~ 419 (1093)
..+.++.......+.+.|...+.......+-+.. ....++.-+...+...++...+.+.....+++.......+..
T Consensus 216 ~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~A 295 (618)
T 1qsa_A 216 QMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA 295 (618)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHH
Confidence 2233444455566889999999887654433332 222233333334436677788887665444443333333444
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhH
Q 001357 420 LISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 499 (1093)
Q Consensus 420 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1093)
+..+++..|..+|..+..... ......+-+|..+...|+.++|..+|..+...... .+.
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~-----~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~f----------------Yg~ 354 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAK-----EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGF----------------YPM 354 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGG-----GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSH----------------HHH
T ss_pred HHCCCHHHHHHHHHHcccccc-----ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCh----------------HHH
Confidence 577999999998865433111 24778899999999999999999999998762110 011
Q ss_pred HHhhhhhhhhhhccCCCCcCCCCc---hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHH
Q 001357 500 LQFKDMQLFHRFENDGNHVELPWN---KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 576 (1093)
Q Consensus 500 ~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 576 (1093)
+....++. .............. .....+..+..+...|....|...+..++...+ ......++.+....|.+.
T Consensus 355 lAa~~Lg~--~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~--~~~~~~la~~a~~~~~~~ 430 (618)
T 1qsa_A 355 VAAQRIGE--EYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWD 430 (618)
T ss_dssp HHHHHTTC--CCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCC--CCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCChH
Confidence 11011100 00000000000000 111234556677888888888888777665322 344456677777777777
Q ss_pred HHHHHH
Q 001357 577 LSIELV 582 (1093)
Q Consensus 577 ~A~~~~ 582 (1093)
.++...
T Consensus 431 ~~v~~~ 436 (618)
T 1qsa_A 431 LSVQAT 436 (618)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766443
No 245
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.95 E-value=3.9 Score=50.23 Aligned_cols=101 Identities=23% Similarity=0.190 Sum_probs=64.2
Q ss_pred HHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001357 135 GQLLLAKGEVEQASS-AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1093)
Q Consensus 135 a~~~~~~g~~~~A~~-~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1093)
....+..+++++|.. ++.. -| +...+...+..+...|.++.|+...+ + +...+ .....+|++
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~-~~~~f---~~~l~~~~~ 668 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------D-QDQKF---ELALKVGQL 668 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------C-HHHHH---HHHHHHTCH
T ss_pred HhHHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------C-cchhe---ehhhhcCCH
Confidence 344566788888876 4411 11 01222555666777888888776552 2 22223 234667888
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 001357 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (1093)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~a 260 (1093)
+.|.+..+ ..++...|..+|..+...++ ++.|..+|.++
T Consensus 669 ~~A~~~~~-----~~~~~~~W~~la~~al~~~~---~~~A~~~y~~~ 707 (814)
T 3mkq_A 669 TLARDLLT-----DESAEMKWRALGDASLQRFN---FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHT-----TCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHH-----hhCcHhHHHHHHHHHHHcCC---HHHHHHHHHHc
Confidence 88887753 33567788888888888888 88888777765
No 246
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.5 Score=53.05 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCH----
Q 001357 675 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA---- 750 (1093)
Q Consensus 675 ~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---- 750 (1093)
..+...+|..|...|+++.|..+|.++.....++. ...++++....+++..+++..+...+.++-......+++
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~--~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG--AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC--SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 34677899999999999999999999999875442 467888999999999999999999999998877666653
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001357 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1093)
Q Consensus 751 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 783 (1093)
.+..+.|..+...++|..|...|..++......
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~ 241 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSI 241 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhccCCcc
Confidence 345577888888999999999999888776544
No 247
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.86 E-value=1.1 Score=55.40 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=13.5
Q ss_pred ChhHHHHhhhhhhcccchHHHHHHHHH
Q 001357 592 YPNALSMLGDLELKNDDWVKAKETFRA 618 (1093)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (1093)
++..|..+|..+++.++++.|..+|.+
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555555555555555555555443
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.56 E-value=3 Score=39.48 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=25.8
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1093)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (1093)
...|+++.|..+.+.+ ++ ...|..+|......|+++-|..+|.++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~-~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----ND-SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CC-HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CC-HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4556666666655443 22 445666666666666666666666553
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.49 E-value=3.6 Score=46.21 Aligned_cols=101 Identities=19% Similarity=0.141 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCC----HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC--C
Q 001357 377 ETLKALGHIYVQLGQIEKAQELLRKAAKI-D-PRD----AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV--P 447 (1093)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~-p~~----~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~--~ 447 (1093)
.+...|+.+|...|++.+|..++..+..- . ..+ ...+.....++ ..+++..|..++.++........... .
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 45567788888888888888888776532 1 111 45566666677 88899988888888754333322211 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001357 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1093)
Q Consensus 448 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 477 (1093)
..++...|.++...++|.+|..+|..+...
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 356677899999999999999999998873
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.94 E-value=4.4 Score=45.48 Aligned_cols=103 Identities=14% Similarity=0.216 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHh-hcCCCC----HH
Q 001357 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK-FYYNTD----AQ 751 (1093)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~----~~ 751 (1093)
...|+.++...|++.+|..++..+..-.-++.. ..-..++.....+|...+++..|...+.++... +..++. ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 457899999999999999999998754432210 112456777788999999999999999998643 333333 45
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 001357 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (1093)
Q Consensus 752 ~l~~la~~~~~~g~~~~A~~~~~~al~~~ 780 (1093)
.+.+.|..+...++|.+|.++|..++...
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 66788999999999999999999888753
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.89 E-value=0.83 Score=51.27 Aligned_cols=121 Identities=11% Similarity=0.116 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD---NVPALLGQACVEFNRGRYSDSLEF 184 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~g~~~~Al~~ 184 (1093)
..+.+.+..+.+-......-..++..+|..|+..|+++.|.++|.++...... -...++....+++..+++..+...
T Consensus 111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~ 190 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEK 190 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34444444444322222334567889999999999999999999998865432 367889999999999999999999
Q ss_pred HHHHHHhCC---CC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001357 185 YKRALQVHP---SC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 185 ~~~al~~~p---~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
+.++..... +. ...+....|..++..++|..|...|-.++....
T Consensus 191 ~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 191 LEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 999866522 21 223455667778888999999998888776543
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.73 E-value=0.93 Score=45.91 Aligned_cols=117 Identities=13% Similarity=0.013 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
.+.+++|+..+...++.+|.|......+..+++-.|+|++|...++.+.+++|.....-..+-.+ -.|...=.
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~aE~~R~ 82 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKAAQARK 82 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHHHHHHH
Confidence 45566999999999999999999999999999999999999999999999999875432221111 01111112
Q ss_pred HHHHh--CC---CChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001357 187 RALQV--HP---SCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 187 ~al~~--~p---~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1093)
.++.- .| ..+. ...+.-+......|+.+.|...-..+++..|..
T Consensus 83 ~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 83 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 22221 12 2212 223345566667799999999999999887653
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.52 E-value=16 Score=38.59 Aligned_cols=218 Identities=14% Similarity=0.084 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhh-HHHHHHHHHHHHHHHHHhchhhhh----------------hh
Q 001357 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADV-RYERIAILNALGVYYTYLGKIETK----------------QR 104 (1093)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~la~~y~~~g~~~~~----------------~~ 104 (1093)
.+-+++.=|.++++|++|+.+|-.+...- +... ...-..+...+..+|...+....+ ..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~~l----l~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p 112 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQTL----LRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEP 112 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHH----HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCc
Confidence 56778888999999999999988764221 1100 011122333444555554432210 01
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001357 105 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (1093)
Q Consensus 105 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 184 (1093)
.|......|+.+-.+.-...-.++..+..+|..|...+++.+|...|- +..+ +.+..+..+-.-+..
T Consensus 113 ~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~-~s~~~~a~mL~ew~~---------- 179 (336)
T 3lpz_A 113 VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTK-ESPEVLARMEYEWYK---------- 179 (336)
T ss_dssp HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCT-THHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCC-chHHHHHHHHHHHHH----------
Confidence 223333334443333211122345555555555555555555555441 1100 011111111111111
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCC------------------CcHHH-HHHHHHHH
Q 001357 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ----LDP------------------ENVEA-LVALAVMD 241 (1093)
Q Consensus 185 ~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p------------------~~~~a-~~~la~~~ 241 (1093)
...|.............|..+++...|..+|...++ .+| ..+.. +..+..+.
T Consensus 180 -----~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt 254 (336)
T 3lpz_A 180 -----QDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLS 254 (336)
T ss_dssp -----TSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHH
T ss_pred -----hcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHH
Confidence 111222222233344566777888888776555443 122 22221 22223333
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHc
Q 001357 242 LQANEAAGIRKGMEKMQRAFEIYP-YCAMALNYLANHFFFT 281 (1093)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p-~~~~~~~~la~~~~~~ 281 (1093)
+..+....+..-...|...++.+| .....+..++..|+..
T Consensus 255 ~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 255 VQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred HhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 344444445556666666676666 6666777777777644
No 254
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.78 E-value=5.2 Score=37.84 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMAS 331 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a 331 (1093)
..|..+|......|+++-|..+|.++
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 45555555555555555555555544
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.77 E-value=3 Score=42.22 Aligned_cols=58 Identities=14% Similarity=0.191 Sum_probs=32.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
++..|.+++|+..+...++.+|.|......+...++-.|+++.|..-++.+.+++|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3445555555555555555555555555555555555555555555555555555554
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.51 E-value=10 Score=48.35 Aligned_cols=88 Identities=10% Similarity=-0.013 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhH
Q 001357 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK--SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345 (1093)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 345 (1093)
+..+.++..++...+.++.++.+...++......+.. ...|..+-..+...|+|++|...+...-. ......++
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd----~~~r~~cL 974 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST----TPLKKSCL 974 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH----SSSCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC----HHHHHHHH
Confidence 3456666777777777887887777777654333221 22466666777777777777666654432 22333445
Q ss_pred HHHHHHHHHcCCHH
Q 001357 346 YGLGQVQLKLGDFR 359 (1093)
Q Consensus 346 ~~la~~~~~~g~~~ 359 (1093)
..+...++..|...
T Consensus 975 r~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 975 LDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHCCHH
T ss_pred HHHHHHHHhCCChh
Confidence 55555555555433
No 257
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.91 E-value=1.1 Score=50.29 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHh------h-----CCCCHHHHHHHHHHHHhcCCchhHH----------HHHHHHHHHh-cCCCCCC
Q 001357 655 THLEKAKELYTRVIV------Q-----HTSNLYAANGAGVVLAEKGQFDVSK----------DLFTQVQEAA-SGSVFVQ 712 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~------~-----~p~~~~a~~~la~~~~~~g~~~~A~----------~~~~~~~~~~-p~~~~~~ 712 (1093)
+++++|..+-..++. . ++-+...|+.+..++...|+..... ..+-.+.... .......
T Consensus 150 k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~ 229 (523)
T 4b4t_S 150 KELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNET 229 (523)
T ss_dssp -----------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcch
Confidence 777777777665541 1 2223344555555555666665432 2222222222 1111123
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCC--CC---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcc
Q 001357 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TD---AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1093)
Q Consensus 713 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~---~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 785 (1093)
...++..+-..|+..+.|++|..+..++. ||.. ++ ...++++|+++.-.++|.+|.+.|..|+...|.+..
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 35566666788999999999999988764 5533 22 556789999999999999999999999999997653
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.79 E-value=2.9 Score=46.02 Aligned_cols=89 Identities=25% Similarity=0.194 Sum_probs=48.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 134 KGQLLLAKGEVEQASSAFKIVLEADRDNV----------------------PALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~----------------------~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
.|......|+...|...+..++.+....+ .++..++..+...|++.+|+..+..++..
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~ 200 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 200 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34444556777788888888776642210 12233444445555555555555555555
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1093)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (1093)
+|-+ ..++..+..+++..|+..+|+..|.++
T Consensus 201 ~P~~-E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 201 HPYR-EPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp STTC-HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555 444555555555555555555555544
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.79 E-value=21 Score=37.28 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcC
Q 001357 41 DLWLIIAREYFKQGKVEQFRQILEEGS 67 (1093)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~ 67 (1093)
..+-+++.=|.+++++++|+.+|..+.
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga 60 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGA 60 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 366778888899999999999988764
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.15 E-value=18 Score=46.08 Aligned_cols=144 Identities=9% Similarity=-0.040 Sum_probs=82.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------------
Q 001357 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH-------------------- 192 (1093)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-------------------- 192 (1093)
.+...+...|.++-|.. .+...|.++...+.+|.+++..|++++|..+|.++-..-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34455666676665544 345567777777888888888888888888887653210
Q ss_pred C--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHH----HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC
Q 001357 193 P--SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVE----ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1093)
Q Consensus 193 p--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~----a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1093)
+ .....+|+.+..++.+.|.++.++..-..+++..+. +.. .|..+-..++..++ |++|...+...-.. .
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~---ye~Ay~aL~~~pd~-~ 968 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK---FDAAHVALMVLSTT-P 968 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC---SGGGGHHHHHHHHS-S
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC---HHHHHHHHHhCCCH-H
Confidence 0 011234556666777777777777777777765432 221 34445555555555 55555554333211 1
Q ss_pred CcHHHHHHHHHHHHHcCCh
Q 001357 266 YCAMALNYLANHFFFTGQH 284 (1093)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~ 284 (1093)
.....+..|....+..|..
T Consensus 969 ~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHhCCCh
Confidence 2234444444444444443
No 261
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.01 E-value=5.1 Score=44.98 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1093)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1093)
++.+|.++.-.++|.+|..++..++...|
T Consensus 273 ~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 273 FFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 34455555555555555555555554443
No 262
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.13 E-value=5.2 Score=43.98 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1093)
+...++..++..|++.+|+..+..++..+|-+..++..+..+++..|+..+|+..|+++..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456778888999999999999999999999999999999999999999999999988765
No 263
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=86.81 E-value=4e-05 Score=83.16 Aligned_cols=265 Identities=14% Similarity=0.172 Sum_probs=171.0
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 205 (1093)
+.+.+|..+|.+.+..|...+|+..|-++ .+|+ .+.....+..+.|.|++-+.++..+-+...+. .+-..+..
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps---~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS---SYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC---SSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHH
Confidence 46789999999999999999999988654 3444 44455556678899999998888776653332 33355788
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH
Q 001357 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1093)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1093)
||.++++..+-...+ ..|+.+. ....|.-++..|. |+.|.-+|.. ..-+..|+.++...|+|.
T Consensus 125 ayAk~~rL~elEefl-----~~~N~A~-iq~VGDrcf~e~l---YeAAKilys~--------isN~akLAstLV~L~~yq 187 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-----NGPNNAH-IQQVGDRCYDEKM---YDAAKLLYNN--------VSNFGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHTSCSSSTTTSTT-----SCCSSSC-THHHHHHHHHSCC---STTSSTTGGG--------SCCCTTTSSSSSSCSGGG
T ss_pred HHHhhCcHHHHHHHH-----cCCCccc-HHHHHHHHHHccC---HHHHHHHHHh--------CccHHHHHHHHHHHHHHH
Confidence 888888865533322 2343322 3344544455554 4444433331 122345666777778887
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 001357 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1093)
Q Consensus 286 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1093)
.|.....++ .+..+|-....++...+.+.-|..+--..+- .++. +-.+...|...|-+++-+.++
T Consensus 188 ~AVdaArKA--------ns~ktWKeV~~ACvd~~EfrLAqicGLniIv----hade---L~elv~~YE~~G~f~ELIsLl 252 (624)
T 3lvg_A 188 AAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----HADE---LEELINYYQDRGYFEELITML 252 (624)
T ss_dssp SSTTTTTTC--------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----CSSC---CSGGGSSSSTTCCCTTSTTTH
T ss_pred HHHHHHHhc--------CChhHHHHHHHHHhCchHHHHHHHhcchhcc----cHHH---HHHHHHHHHhCCCHHHHHHHH
Confidence 777665543 3346777777888888888777666655552 2222 223445677889999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CC------CHHHHHHHHHHH-hcCCHHHHHH
Q 001357 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-ID-PR------DAQAFIDLGELL-ISSDTGAALD 430 (1093)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-~~-p~------~~~~~~~la~~~-~~~~~~~A~~ 430 (1093)
+..+.+..-+...+..||.+|.+- +.++-.++++-... ++ |. ....|..+..+| .-.+|+.|..
T Consensus 253 EaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 253 EAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 999988777888999999888775 44555544433211 11 22 345677777777 7778887653
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.91 E-value=42 Score=35.35 Aligned_cols=142 Identities=11% Similarity=-0.015 Sum_probs=74.8
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhh
Q 001357 522 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 601 (1093)
Q Consensus 522 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 601 (1093)
..++..+..+|..|+..+++.+|...|- +. ..+.+..+..+..-+...+. |.....+...+.
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg-~~~s~~~~a~mL~ew~~~~~---------------~~e~dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--LG-TKESPEVLARMEYEWYKQDE---------------SHTAPLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--TS-CTTHHHHHHHHHHHHHHTSC---------------GGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--hc-CCchHHHHHHHHHHHHHhcC---------------CccHHHHHHHHH
Confidence 3577899999999999999999988773 21 11122333333322222222 223333333332
Q ss_pred -hhhcccchHHHHHHHHHhhh----cCCC----------C-----ChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHH
Q 001357 602 -LELKNDDWVKAKETFRAASD----ATDG----------K-----DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (1093)
Q Consensus 602 -~~~~~g~~~~A~~~~~~~l~----~~~~----------~-----d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (1093)
.|+..++...|...|....+ ..|. . ....+++...+..... . .++ ...+..-.
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~-q--~~~----~~lF~~L~ 267 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSV-Q--KGS----PDLFRQLK 267 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHH-H--SCC----HHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHH-h--cCC----HHHHHHHH
Confidence 35666777777775554443 1121 0 0122222332202222 1 111 13466666
Q ss_pred HHHHHHHhhCC-CCHHHHHHHHHHHHhc
Q 001357 662 ELYTRVIVQHT-SNLYAANGAGVVLAEK 688 (1093)
Q Consensus 662 ~~~~~~l~~~p-~~~~a~~~la~~~~~~ 688 (1093)
+.|...+..+| .-...+..+|.+|...
T Consensus 268 ~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 268 SKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 77777777777 6667777788887744
No 265
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=84.80 E-value=3.7 Score=46.48 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001357 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1093)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~ 420 (1093)
++..+|.+......+..|..+|.++..+.|.+...++.||.+....|+.-.|+-+|-+++......+.+..++..++
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 45667888888888888999999999999999999999999998888888888888888877666788888877766
No 266
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=83.76 E-value=3.5 Score=46.66 Aligned_cols=80 Identities=20% Similarity=0.186 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhc
Q 001357 526 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605 (1093)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 605 (1093)
..+..+|.+......+..|..+|.++....|+....++.||.++...|+.-+|+.+|-+++......+.+..++..++.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 46677888888888899999999999999999999999999999999999999999999998877788888888776543
No 267
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=73.21 E-value=0.00063 Score=74.05 Aligned_cols=269 Identities=13% Similarity=0.099 Sum_probs=155.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
+.+..|..+|.++...+...+|+..|-++ .+|.+ +........+.|.+++-+.++.-+-+. -..+..-..|..
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~----y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSS----YMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCS----SSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHH----HHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHH
Confidence 34566667777777777777776666433 23443 333444555666666666655554432 222233334444
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcC
Q 001357 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319 (1093)
Q Consensus 240 ~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 319 (1093)
+|.+.++...+++ .+ ..|+. .-....|.-++..|.|+.|.-+|..+. -|..|+.++..+|
T Consensus 125 ayAk~~rL~elEe-------fl-~~~N~-A~iq~VGDrcf~e~lYeAAKilys~is-----------N~akLAstLV~L~ 184 (624)
T 3lvg_A 125 ALAKTNRLAELEE-------FI-NGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHLG 184 (624)
T ss_dssp HHHTSCSSSTTTS-------TT-SCCSS-SCTHHHHHHHHHSCCSTTSSTTGGGSC-----------CCTTTSSSSSSCS
T ss_pred HHHhhCcHHHHHH-------HH-cCCCc-ccHHHHHHHHHHccCHHHHHHHHHhCc-----------cHHHHHHHHHHHH
Confidence 4444444111110 00 11222 223445666666666665555544221 2334566666777
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (1093)
Q Consensus 320 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 399 (1093)
+|..|+..-+++ .+..+|-....++...+.+.-|..+--.++- +|+. +-.+...|...|.|++-+.++
T Consensus 185 ~yq~AVdaArKA--------ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~elv~~YE~~G~f~ELIsLl 252 (624)
T 3lvg_A 185 EYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEELINYYQDRGYFEELITML 252 (624)
T ss_dssp GGGSSTTTTTTC--------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTTCCCTTSTTTH
T ss_pred HHHHHHHHHHhc--------CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHHHHHHHhCCCHHHHHHHH
Confidence 776665544332 3345577777777788877777666555442 2222 223445577789999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 400 RKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEE------VPIEVLNNIGVIHFEKGEFESAHQS 470 (1093)
Q Consensus 400 ~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~ 470 (1093)
+..+.+..-+...+..||.+|..-.+++-.+.++.... ..+.+ .....|..+..+|..-.+++.|...
T Consensus 253 EaglglErAHmGmFTELaILYsKY~PeKlmEHlklf~s---riNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 253 EAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSS---SSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHhCCCchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 99999888899999999999966667666655543111 11111 1145677788888888999877654
No 268
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=67.71 E-value=68 Score=28.62 Aligned_cols=114 Identities=13% Similarity=0.113 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHH------------------HHHHHH--HhcCCchhHHHHHHHHHHHhcCCCCCCch
Q 001357 655 THLEKAKELYTRVIVQHTSNLYAAN------------------GAGVVL--AEKGQFDVSKDLFTQVQEAASGSVFVQMP 714 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~------------------~la~~~--~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 714 (1093)
|..++..++..+.....|-..+-|. .+|.++ ...|++..-+..|-.+ ...
T Consensus 21 G~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~----------n~~ 90 (172)
T 1wy6_A 21 GYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN----------NTL 90 (172)
T ss_dssp TCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT----------TCC
T ss_pred hhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh----------cch
Confidence 7888888999888877665332221 111111 1235555555555443 112
Q ss_pred hHHHHHH-HHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 001357 715 DVWINLA-HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (1093)
Q Consensus 715 ~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~ 780 (1093)
.-|+.+| .++..+|+.++=-+.+...+.. .++++++++.+|.+|.+.|+..+|-+.+.+|.+..
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 2345555 4567788888777776665442 56679999999999999999999999999988764
No 269
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=66.76 E-value=71 Score=28.50 Aligned_cols=143 Identities=13% Similarity=0.089 Sum_probs=81.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHH--HHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHH
Q 001357 43 WLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAI--LNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1093)
Q Consensus 43 ~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~--~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a 120 (1093)
-+.=|....-.|.+++.++++.+...+.+-..|.=...+-+.. -..+...+-..|++-. -.+-+++...+.+|-++
T Consensus 10 kLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD--is~C~NlKrVi~C~~~~ 87 (172)
T 1wy6_A 10 KLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--LDKCQNLKSVVECGVIN 87 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--GGGCSCTHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcC--cHhhhcHHHHHHHHHHh
Confidence 3556788899999999999999976543321111000000000 0011122222333220 11233444566666554
Q ss_pred HhcCCCChhhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001357 121 SRIDMHEPSTWVGKG-QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1093)
Q Consensus 121 ~~~~p~~~~~~~~~a-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1093)
-. +. -++.+| ..+..+|+-++-...+..++...+.++..++.+|.+|.+.|+..+|-.++.++.+..
T Consensus 88 n~----~s-e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 88 NT----LN-EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp TC----CC-HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cc----hH-HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 22 12 233443 455677887777777777666677778888888888888888888888888877654
No 270
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=54.52 E-value=3.1e+02 Score=31.94 Aligned_cols=77 Identities=14% Similarity=-0.004 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---H---
Q 001357 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL---L--- 420 (1093)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~---~--- 420 (1093)
..-+++.-.|+|+.|+.++-+. + ....++..++..+ .|-+.. -..++..+++.+ .++++.+ |
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~---~-~vdAVH~AIaL~~--~gLL~~----~~~lls~~~~~~--~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF---S-EMDAVHLAIGLAS--LKLFKI----DSSTRLTKKPKR--DIRFANILANYTKS 366 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT---C-HHHHHHHHHHHHH--TTC-----------------------CHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc---C-chhHHHHHHHHHH--cCCccC----CCcccccCCCcc--cccHHHHHHHHHHH
Confidence 4667888999999999988754 1 1122444444433 444332 223333333322 2233322 2
Q ss_pred -hcCCHHHHHHHHHHH
Q 001357 421 -ISSDTGAALDAFKTA 435 (1093)
Q Consensus 421 -~~~~~~~A~~~~~~a 435 (1093)
...+...|+.+|--+
T Consensus 367 F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTTCHHHHHHHHHGG
T ss_pred hhcCCHHHHHHHHHHH
Confidence 567888888877543
No 271
>1ko6_B Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Probab=53.09 E-value=4.2 Score=30.43 Aligned_cols=17 Identities=53% Similarity=0.710 Sum_probs=12.8
Q ss_pred cCCCCCCCCCCCCCCch
Q 001357 1026 AGLEDSDVDDEMAPSIT 1042 (1093)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~ 1042 (1093)
-||.|||+||+..|+-+
T Consensus 3 YGL~DSDEEEe~~P~d~ 19 (64)
T 1ko6_B 3 YGLQDSDEEEEEHPSKT 19 (64)
T ss_pred cCccccchhhhcCCCcc
Confidence 58999999987655544
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=49.72 E-value=1.8e+02 Score=27.86 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=40.8
Q ss_pred cCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 688 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 688 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
.++...+..+|.-+....-|. ..+..|...|..+...|++.+|..+|+..+..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~---~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGT---KLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSST---TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHCCCcH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 344668888888888776544 56777778888888888888888888888876
No 273
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=49.34 E-value=1.2e+02 Score=35.55 Aligned_cols=100 Identities=12% Similarity=0.069 Sum_probs=46.6
Q ss_pred HHHHHHHH-HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001357 148 SSAFKIVL-EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1093)
Q Consensus 148 ~~~~~~al-~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 226 (1093)
+.-++..+ +..|....+ ....++.-.|+|+.|+.++-+. .....+|+.++..+ .|-+.. -...+..
T Consensus 281 L~~LQ~~I~~yGe~~F~~--lYf~vLlLtgqFE~AI~~L~~~-----~~vdAVH~AIaL~~--~gLL~~----~~~lls~ 347 (661)
T 2qx5_A 281 LEDFQNIIISYGPSRFSN--YYLQTLLLSGLYGLAIDYTYTF-----SEMDAVHLAIGLAS--LKLFKI----DSSTRLT 347 (661)
T ss_dssp HHHHHHHHHHHCGGGGTT--CHHHHHHHTTCHHHHHHHHHTT-----CHHHHHHHHHHHHH--TTC--------------
T ss_pred HHHHHHHHHHhhhhhhhh--HHHHHHHHHhhHHHHHHHHHhc-----CchhHHHHHHHHHH--cCCccC----CCccccc
Confidence 45555555 334443333 4556777899999999987654 22345666666665 343332 2233333
Q ss_pred CCCcHHH-HHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 001357 227 DPENVEA-LVALAVMDLQANEAAGIRKGMEKMQRA 260 (1093)
Q Consensus 227 ~p~~~~a-~~~la~~~~~~~~~~~~~~Al~~~~~a 260 (1093)
+|+.+.. +..|...|.+.-...+...|+.+|--+
T Consensus 348 ~~~~~~lN~arLI~~Yt~~F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 348 KKPKRDIRFANILANYTKSFRYSDPRVAVEYLVLI 382 (661)
T ss_dssp -------CHHHHHHHHHTTTTTTCHHHHHHHHHGG
T ss_pred CCCcccccHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 3332211 222333333322233377888877655
No 274
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.70 E-value=2.1e+02 Score=35.34 Aligned_cols=50 Identities=8% Similarity=0.036 Sum_probs=25.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1093)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1093)
...+...|.++-|.. .+...|.++..-+.+|.++...|++++|..+|+++
T Consensus 817 ~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 817 VEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444455443322 23344555555555566666666666666555544
No 275
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=43.43 E-value=3e+02 Score=28.55 Aligned_cols=27 Identities=7% Similarity=-0.087 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHH
Q 001357 523 NKVTVLFNLARLLEQIHDTVAASVLYR 549 (1093)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~ 549 (1093)
.++..+..+|..|...|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 578899999999999999999988775
No 276
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.16 E-value=78 Score=39.24 Aligned_cols=38 Identities=11% Similarity=0.012 Sum_probs=30.1
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 001357 665 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 702 (1093)
Q Consensus 665 ~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~ 702 (1093)
...+..-|.++..-+.+|.+|...|++++|..+|+++-
T Consensus 830 ~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 830 MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34556677788888888888888888888888888764
No 277
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.36 E-value=1.1e+02 Score=28.17 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---H---HHHHH---HHHHHHHcCChHHHHHHHHHHHHh
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDN---V---PALLG---QACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~---~a~~~---la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
-+..|..++..|+|=+|-.+++.+....+.. - ..++. .|....+.|+...|..++.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3567788888899999999999988776543 1 22222 233445568888888888777663
No 278
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=36.83 E-value=97 Score=32.21 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCC
Q 001357 44 LIIAREYFKQGKVEQFRQILEEGSS 68 (1093)
Q Consensus 44 ~~la~~y~~~g~~~~a~~~l~~a~~ 68 (1093)
+..|..++..|++.+|+..|..++.
T Consensus 118 Lk~gyk~~t~gKf~eAl~~Fr~iL~ 142 (325)
T 3mv2_A 118 MNEGYKNFKLNKPDIAIECFREAIY 142 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6678999999999999999998754
No 279
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=35.64 E-value=49 Score=26.67 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=12.1
Q ss_pred HhcCHHHHHHHHHHHHHh
Q 001357 726 AQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 726 ~~g~~~~A~~~~~~al~~ 743 (1093)
..|++.+|+.+|..++..
T Consensus 31 ~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 457777777777666654
No 280
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=34.70 E-value=47 Score=26.79 Aligned_cols=15 Identities=27% Similarity=0.570 Sum_probs=6.8
Q ss_pred HcCChHHHHHHHHHH
Q 001357 174 NRGRYSDSLEFYKRA 188 (1093)
Q Consensus 174 ~~g~~~~Al~~~~~a 188 (1093)
..|+|.+|+.+|..+
T Consensus 31 ~~g~y~eAl~lY~~a 45 (83)
T 2w2u_A 31 KEGNAEEAITNYKKA 45 (83)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH
Confidence 444444444444433
No 281
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=34.59 E-value=51 Score=26.54 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=13.1
Q ss_pred HhcCHHHHHHHHHHHHHh
Q 001357 726 AQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 726 ~~g~~~~A~~~~~~al~~ 743 (1093)
..|+|.+|+.+|..++..
T Consensus 23 ~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 457888888887777665
No 282
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=34.41 E-value=3.4e+02 Score=28.42 Aligned_cols=81 Identities=12% Similarity=0.187 Sum_probs=53.8
Q ss_pred HHHHHHHHhcC---CchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHH---HhhcCCCCHHH
Q 001357 679 NGAGVVLAEKG---QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL---RKFYYNTDAQI 752 (1093)
Q Consensus 679 ~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~~~~~~~~~ 752 (1093)
..|-+++...| +|.-|+-.+-..-+..|.+..+. ++.+|.+++ +.+..+..+--
T Consensus 239 q~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~--------------------~l~L~~~AI~sa~~yY~n~HvYP 298 (472)
T 3re2_A 239 QELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPP--------------------AEELFKEAITVAKREYSDHHIYP 298 (472)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCC--------------------HHHHHHHHHHHHHHHSTTCCSHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCC--------------------HHHHHHHHHHHHHHHhccCCccc
Confidence 45667777665 56778877777777777543222 333333333 23345556677
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001357 753 LLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1093)
Q Consensus 753 l~~la~~~~~~g~~~~A~~~~~~al~~ 779 (1093)
+.++|..+++.+++.+|+..+-.+-..
T Consensus 299 YtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 299 YTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 788888999999999999988776554
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.17 E-value=1.8e+02 Score=28.45 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=41.1
Q ss_pred chhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 001357 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1093)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 744 (1093)
.+.+..+|.-+....-|. ..+..|...|.++...|++.+|..+|+..+...
T Consensus 130 ~~~p~~if~~L~~~~IG~---~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQ---ESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CSCHHHHHHHHHHTTCST---TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCcch---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 467888888888776543 567788888888889999999999999988873
No 284
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=33.32 E-value=50 Score=26.60 Aligned_cols=16 Identities=31% Similarity=0.877 Sum_probs=8.6
Q ss_pred HcCChHHHHHHHHHHH
Q 001357 174 NRGRYSDSLEFYKRAL 189 (1093)
Q Consensus 174 ~~g~~~~Al~~~~~al 189 (1093)
+.|+|.+|+.+|..++
T Consensus 23 ~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAI 38 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 5555555555555443
No 285
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=32.88 E-value=99 Score=34.26 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcC--------C--CChhhHHHHHHHHHHcCCHHHHHHHHH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID--------M--HEPSTWVGKGQLLLAKGEVEQASSAFK 152 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~--------p--~~~~~~~~~a~~~~~~g~~~~A~~~~~ 152 (1093)
.-+.+.|-.+|+++++.. .+..++..+-... | .-...+|.+|..++..++|.+|...|.
T Consensus 176 l~l~n~L~kiYFkl~~~~-----------lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~ 244 (455)
T 3t5v_B 176 LYLVNKLNNIYFRIESPQ-----------LCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFN 244 (455)
T ss_dssp HHHHHHHHHHHHHSSCCT-----------THHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHH
Confidence 444567788999999887 3444444332211 1 123566788999999999999999999
Q ss_pred HHHHh-CCCC
Q 001357 153 IVLEA-DRDN 161 (1093)
Q Consensus 153 ~al~~-~p~~ 161 (1093)
.|+.. .|..
T Consensus 245 ~A~~~lcp~~ 254 (455)
T 3t5v_B 245 EAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHhcCCcc
Confidence 99887 6654
No 286
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=32.25 E-value=3.3e+02 Score=26.29 Aligned_cols=128 Identities=12% Similarity=0.013 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhc---CCCchhhhhhhhHHHHHHHHHHHHHHHHHh--chhh---hhhhHhHHHHH
Q 001357 40 LDLWLIIAREYFKQGKVEQFRQILEEG---SSPEIDEYYADVRYERIAILNALGVYYTYL--GKIE---TKQREKEEHFI 111 (1093)
Q Consensus 40 ~~~~~~la~~y~~~g~~~~a~~~l~~a---~~~~~~~~~~~~~~~~~~~~~~la~~y~~~--g~~~---~~~~~r~~~~~ 111 (1093)
.++++.-+..+|+.|++.+|.++...+ +...... -.. ....+. +..+..+. |..- .+...+.-=++
T Consensus 16 lDfyf~~~c~aFR~~r~~dFrq~rdi~eall~~~l~~-~~~-~~k~ir----i~QfLsRI~eG~~LD~~Fd~~~~lTPLE 89 (235)
T 3bu8_A 16 LKFYFHEALRAFRGSRYGDFRQIRDIMQALLVRPLGK-EHT-VSRLLR----VMQCLSRIEEGENLDCSFDMEAELTPLE 89 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCCCC-CHH-HHHHHH----HHHHHHHHHTTTCTTEECSSSTTCCHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhCcccc-ccc-chhHHH----HHHHHHHHHcCCCCCcccCCCCCCChHH
Confidence 357788899999999999998876553 3111110 000 001111 12222221 2211 01111122245
Q ss_pred HHHHHHHHHHhcCCCChhh--------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001357 112 LATQYYNKASRIDMHEPST--------WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEF 173 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~--------~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 173 (1093)
.|+.+++.+-+..+-.... -.....+++..|.|++|...|++....+|.+-.....+..+-.
T Consensus 90 SAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~ 159 (235)
T 3bu8_A 90 SAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIR 159 (235)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Confidence 7777777776555422211 1223455677888888888888887766665555555555433
No 287
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=32.10 E-value=1.5e+02 Score=21.60 Aligned_cols=10 Identities=60% Similarity=0.800 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 001357 893 EARRKAEEQK 902 (1093)
Q Consensus 893 ~~~~~~~~~~ 902 (1093)
++.|++++.+
T Consensus 19 eAlrq~Ee~R 28 (63)
T 3rk3_E 19 EALRQAEEER 28 (63)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 288
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=32.06 E-value=3.7e+02 Score=28.78 Aligned_cols=81 Identities=11% Similarity=0.240 Sum_probs=54.3
Q ss_pred HHHHHHHHhcC---CchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHH---HhhcCCCCHHH
Q 001357 679 NGAGVVLAEKG---QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL---RKFYYNTDAQI 752 (1093)
Q Consensus 679 ~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~~~~~~~~~ 752 (1093)
..|-+++...| +|.-|+-.+-..-+..|.+..+. ++.+|.+++ +.+..+..+.-
T Consensus 261 q~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~~--------------------~~~L~~~AI~sa~~~Y~n~HvYP 320 (550)
T 3u84_A 261 QKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPD--------------------PLTLYHKGIASAKTYYRDEHIYP 320 (550)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCCC--------------------HHHHHHHHHHHHHHHSTTCCSHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHhhcCCCCCCCC--------------------HHHHHHHHHHHHHHHhccCCccc
Confidence 45667777665 56778888888877777543221 333333333 33445556777
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001357 753 LLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1093)
Q Consensus 753 l~~la~~~~~~g~~~~A~~~~~~al~~ 779 (1093)
|.++|-.+++.+++.+|+..+-.+-..
T Consensus 321 YtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 321 YMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeecchhhhhcchHHHHHHHHHHHHHH
Confidence 888999999999999999988766553
No 289
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=31.32 E-value=1e+02 Score=24.03 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001357 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1093)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1093)
.+|..+...|++++|+.+|-+++...|.-
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 45566666666666666666666665543
No 290
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=30.91 E-value=1.8e+02 Score=32.07 Aligned_cols=71 Identities=10% Similarity=0.141 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhc--C-CCCC--CchhHHHHHHHHHHHhcCHHHHHHHHHHHHHh-hcCC
Q 001357 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAAS--G-SVFV--QMPDVWINLAHVYFAQGNFALAMKMYQNCLRK-FYYN 747 (1093)
Q Consensus 677 a~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~-~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~ 747 (1093)
..+.+-.+|.+.|+..-+..++..+-...+ . +.++ .....+|.+|.+++.+++|.+|...+..|+.. .+..
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 345667889999999999999987766532 1 1111 12345667788888888888888888888887 6543
No 291
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=30.04 E-value=1.1e+02 Score=23.82 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=16.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1093)
.+|..+...|++++|..+|-+|+...|.-
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 35555555555555555555555555543
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.79 E-value=3.3e+02 Score=25.14 Aligned_cols=49 Identities=20% Similarity=0.420 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 692 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 692 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
+.+..+|..+....-+. ..+..|...|.++...|++.+|..+|+..+..
T Consensus 77 ~~p~~if~~L~~~~IG~---~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGV---SLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp SCHHHHHHHHHHTTSST---TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcch---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45777777777665433 56667777777777778888888887777775
No 293
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=29.59 E-value=41 Score=32.72 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHhhccH
Q 001357 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---AQILLYLARTHYEAEQW 766 (1093)
Q Consensus 715 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~l~~la~~~~~~g~~ 766 (1093)
...+-+|.+++.+++|.+|...+..|+..++.... ..++.+|.-+-...|+.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCC
Confidence 34556677777777777777777777776543321 33444555555555553
No 294
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=26.54 E-value=2.8e+02 Score=23.95 Aligned_cols=18 Identities=28% Similarity=0.648 Sum_probs=11.0
Q ss_pred HhcCHHHHHHHHHHHHHh
Q 001357 726 AQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 726 ~~g~~~~A~~~~~~al~~ 743 (1093)
..|+|.+|+.+|..++..
T Consensus 30 ~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 346666776666665554
No 295
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=25.02 E-value=1.2e+02 Score=29.32 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1093)
...+.+|..++..++|.+|...|..++...|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 345667777777777777777777777776654
No 296
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.00 E-value=3.1e+02 Score=26.77 Aligned_cols=87 Identities=5% Similarity=0.018 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHH
Q 001357 694 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 773 (1093)
Q Consensus 694 A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~ 773 (1093)
=..++++++....+...-.+-.-|+.+-..|.. ..+.+..+|..+...--....+..|...|..+...|++.+|..+|
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~--~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 173 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVN--YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVY 173 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHT--TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHH--ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456778877776432111111122222222222 235788888888876433334777778888999999999999999
Q ss_pred HHHHHhCCC
Q 001357 774 LRAIHLAPS 782 (1093)
Q Consensus 774 ~~al~~~P~ 782 (1093)
+..++..-.
T Consensus 174 ~~Gi~~~A~ 182 (223)
T 4aez_C 174 QKGKRMKAK 182 (223)
T ss_dssp HHHHHHTCB
T ss_pred HHHHHcCCc
Confidence 999987643
No 297
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=24.22 E-value=3.1e+02 Score=22.86 Aligned_cols=76 Identities=22% Similarity=0.184 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221 (1093)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 221 (1093)
...++|..+-+= +...+....+-+.....+.++|+|++|+.+.+ |.+.+++--.++.|-+++|-.+++...+.
T Consensus 20 H~HqEA~tIAdw-L~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~------~~c~pdlepw~ALce~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 20 HCHEEALCIAEW-LERLGQDEAARLIRISSLANQGRYQEALAFAH------GNPWPALEPWFALCEWHLGLGAALDRRLA 92 (115)
T ss_dssp TCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGT------TCCCGGGHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHcchhHHHHHHhcC------CCCCchHHHHHHHHHHhcccHHHHHHHHH
Confidence 346777665543 44455544455666677889999999987654 33345555668899999999888887775
Q ss_pred HHH
Q 001357 222 RAL 224 (1093)
Q Consensus 222 ~al 224 (1093)
++-
T Consensus 93 ~la 95 (115)
T 2uwj_G 93 GLG 95 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 298
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=23.94 E-value=3.2e+02 Score=22.85 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221 (1093)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 221 (1093)
...++|..+-+= +...+....+-+.....+.++|+|++|+.+.+. .+.+++--.++.|-+++|-.+++...+.
T Consensus 21 H~HqEA~tIAdw-L~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~------~c~pdlepw~ALce~rlGl~s~le~rL~ 93 (116)
T 2p58_C 21 HYHEEANCIAEW-LHLKGEEEAVQLIRLSSLMNRGDYASALQQGNK------LAYPDLEPWLALCEYRLGLGSALESRLN 93 (116)
T ss_dssp TCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTT------SCCGGGHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCC------CCCchHHHHHHHHHHhcccHHHHHHHHH
Confidence 356777665543 444555444556666778899999999877643 3334555567889999999888887765
Q ss_pred HH
Q 001357 222 RA 223 (1093)
Q Consensus 222 ~a 223 (1093)
++
T Consensus 94 ~l 95 (116)
T 2p58_C 94 RL 95 (116)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 299
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=23.55 E-value=3.1e+02 Score=22.63 Aligned_cols=9 Identities=44% Similarity=0.398 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 001357 878 NRQRQEAAR 886 (1093)
Q Consensus 878 ~~~~~~~~~ 886 (1093)
.-+++|++|
T Consensus 18 L~~~lE~Ar 26 (105)
T 3v6i_B 18 LLERLEAAK 26 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 300
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=22.99 E-value=31 Score=19.48 Aligned_cols=12 Identities=42% Similarity=0.509 Sum_probs=7.8
Q ss_pred CCCchHHHHhhh
Q 001357 1038 APSITAARRRRA 1049 (1093)
Q Consensus 1038 ~~~~~~~~~~~~ 1049 (1093)
.-||.++||||-
T Consensus 7 srpsgaerrrrr 18 (26)
T 1g70_B 7 SRPSGAERRRRR 18 (26)
T ss_pred CCCchHHHHHHH
Confidence 456777877663
No 301
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.92 E-value=3e+02 Score=25.29 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHH------HHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIR------LGIGLCRYKLGQLGKARQAFQRALQ 225 (1093)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~------~~la~~~~~~g~~~~A~~~~~~al~ 225 (1093)
+..+..++..|+|=+|-.+++.+-...+.. ....+ +..|..+++.|+..-|...+.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445566677777777777777776655433 22222 2223344556777777777776655
No 302
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=22.84 E-value=5.8e+02 Score=25.50 Aligned_cols=176 Identities=10% Similarity=-0.060 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhc--CC-hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHcC--CChhHHHH
Q 001357 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKY--QD-YVDAYLRLAAIAKA-RNNLQLSIELVNEALKVNG--KYPNALSM 598 (1093)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p--~~~~~~~~ 598 (1093)
..-+..++.+..+.++|++...+++++...+ +. ..+-...|..+|.. .|....+...+...-+... .+ .....
T Consensus 8 re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~-~~~~~ 86 (260)
T 1o9d_A 8 REENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGN-EEHVN 86 (260)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCc-HHHHH
Confidence 4556678999999999999999999999977 54 34444555544432 2333444444443222211 11 11112
Q ss_pred hhhhhhcc------cchHHHHHHHHHhhhcCCC---CChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHh
Q 001357 599 LGDLELKN------DDWVKAKETFRAASDATDG---KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 669 (1093)
Q Consensus 599 l~~~~~~~------g~~~~A~~~~~~~l~~~~~---~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 669 (1093)
+..-|... .-....+.++...+-.... ...+-+-..|+. |...+.. ........-.+.|...|+.++.
T Consensus 87 ~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDY-yRYlaE~--~~g~~r~~~~e~a~~aY~~A~~ 163 (260)
T 1o9d_A 87 SIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDY-HRYLAEF--KTGAERKEAAESTLTAYKAAQD 163 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHH-HHHHHHH--CCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccH-HHHHHHh--cCchHHHHHHHHHHHHHHHHHH
Confidence 22211111 0122333334433321111 112222334555 4433222 1112222445566667766654
Q ss_pred -----hCCCCHH---HHHHHHHHH-HhcCCchhHHHHHHHHHHH
Q 001357 670 -----QHTSNLY---AANGAGVVL-AEKGQFDVSKDLFTQVQEA 704 (1093)
Q Consensus 670 -----~~p~~~~---a~~~la~~~-~~~g~~~~A~~~~~~~~~~ 704 (1093)
+.|.++. ...+....| --.++.++|+.+.+++.+.
T Consensus 164 iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 164 IATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4566653 222333333 3467888887777776653
No 303
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=22.26 E-value=1.1e+02 Score=25.20 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=12.9
Q ss_pred HhcCHHHHHHHHHHHHHh
Q 001357 726 AQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 726 ~~g~~~~A~~~~~~al~~ 743 (1093)
..|+|.+|+.+|..++..
T Consensus 27 ~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 27 AESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 457788888887777665
No 304
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=22.06 E-value=5.1e+02 Score=27.73 Aligned_cols=122 Identities=12% Similarity=0.176 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHH
Q 001357 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1093)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~ 121 (1093)
.|+.+...+....+.= ++..+-.++.+.++... ++ -+-..+-..|-|+++.+|... .|-.|+-.+-.+-
T Consensus 219 SWLYl~G~~v~C~R~M-eVAa~VsaiNPsi~~~t-ds-~el~~LQq~LLWlLyd~GhL~--------rYPmALgnLgDLE 287 (550)
T 3u84_A 219 SWLYLKGSYMRCDRKM-EVAFMVCAINPSIDLHT-DS-LELLQLQQKLLWLLYDLGHLE--------RYPMALGNLADLE 287 (550)
T ss_dssp CGGGGGGCCEECCHHH-HHHHHHHTCCCBSSSSC-BC-HHHHHHHHHHHHHHHHTTTTT--------TCHHHHHHHHHHH
T ss_pred ceEEecCceEeechHh-HHHHHHHhcCCcccccc-cH-HHHHHHHHHHHHHHHhccchh--------hCchhhcchhhHh
Confidence 5777777777776533 33334445555543211 11 134445567788888888776 3445666666555
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA-----DRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1093)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1093)
.+.|..... .++.+|.+++.. ...+...|..+|-.+++.+++.+|+..+..+-
T Consensus 288 e~~pt~gr~---------------~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 288 ELEPTPGRP---------------DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHSCCTTCC---------------CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCCCCCC---------------CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 555532110 034444444432 12344555666666667777777766665543
No 305
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=21.96 E-value=1e+02 Score=25.40 Aligned_cols=16 Identities=25% Similarity=0.615 Sum_probs=9.2
Q ss_pred HcCChHHHHHHHHHHH
Q 001357 174 NRGRYSDSLEFYKRAL 189 (1093)
Q Consensus 174 ~~g~~~~Al~~~~~al 189 (1093)
..|+|.+|+.+|..++
T Consensus 27 ~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 27 AESRYQQALVCYQEGI 42 (93)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 5566666666655443
No 306
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.50 E-value=4.6e+02 Score=23.79 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=38.2
Q ss_pred chhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
.+.+..+|.-+....-+. ..+..|...|..+...|++.+|..+|+..++.
T Consensus 81 ~~dp~~if~~L~~~~IG~---~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGT---LSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp BSCHHHHHHHHHTTTTTT---TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 355788888887765443 56777778888888888888888888888876
No 307
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=21.42 E-value=6.2e+02 Score=25.30 Aligned_cols=62 Identities=13% Similarity=-0.056 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHH-cCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEAD--RD-NVPALLGQACVEFN-RGRYSDSLEFYKRAL 189 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~-~~~a~~~la~~~~~-~g~~~~Al~~~~~al 189 (1093)
-.-++.++.+.-+.++|++.+.++.++...+ +. +..-...+..+|-. .|....+++++..+-
T Consensus 8 re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissie 73 (260)
T 1o9d_A 8 REENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIE 73 (260)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3456778888899999999999999999876 43 34444444444422 255556666665543
No 308
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.09 E-value=1.7e+02 Score=28.19 Aligned_cols=14 Identities=0% Similarity=0.344 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 001357 655 THLEKAKELYTRVI 668 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l 668 (1093)
+++.+-+.+++-++
T Consensus 33 ~dFrq~rdi~eall 46 (235)
T 3bu8_A 33 GDFRQIRDIMQALL 46 (235)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555544
No 309
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.98 E-value=4.9e+02 Score=23.94 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001357 731 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1093)
Q Consensus 731 ~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~ 782 (1093)
..+..+|..+...--....+..|...|..+...|++.+|..+|+..++..-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 4577888888776433344777778888999999999999999999997643
No 310
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=20.30 E-value=5.7e+02 Score=24.43 Aligned_cols=85 Identities=9% Similarity=0.060 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCC-CCCCc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHH
Q 001357 696 DLFTQVQEAASGS-VFVQM---PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771 (1093)
Q Consensus 696 ~~~~~~~~~~p~~-~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~ 771 (1093)
.++++++....+. .+.++ ..+|+.++..+ ..+....+..+|.-+...--....+..|...|..+...|++.+|..
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5788888766432 22222 23444444433 2345779999999998874334447777888999999999999999
Q ss_pred HHHHHHHhCC
Q 001357 772 SLLRAIHLAP 781 (1093)
Q Consensus 772 ~~~~al~~~P 781 (1093)
+|+..++..-
T Consensus 137 Vy~~GI~~~A 146 (202)
T 3esl_A 137 LLELGAENNC 146 (202)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 9999998764
No 311
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.26 E-value=2.7e+02 Score=22.90 Aligned_cols=57 Identities=14% Similarity=0.042 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHH--HHHHHHHHHcCChHHHHHHHHHHHH
Q 001357 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNV----PAL--LGQACVEFNRGRYSDSLEFYKRALQ 190 (1093)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~--~~la~~~~~~g~~~~Al~~~~~al~ 190 (1093)
+..|..++..|+|=+|-+.++.+-...|... ..+ +..|......|+. |..++.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4456777778888888888888877765421 122 2223333455666 7777776655
Done!