Query 001358
Match_columns 1092
No_of_seqs 899 out of 5044
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 22:45:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 6.1E-73 1.3E-77 560.6 33.9 493 5-653 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 1.5E-62 3.3E-67 470.9 30.7 492 4-650 6-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 1.1E-59 2.5E-64 501.0 49.3 576 340-1009 25-620 (775)
4 KOG0319 WD40-repeat-containing 100.0 2.2E-56 4.8E-61 476.0 44.9 589 292-966 18-620 (775)
5 KOG0318 WD40 repeat stress pro 100.0 3.6E-52 7.8E-57 426.3 62.1 575 338-1008 22-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 1.4E-49 3E-54 423.8 65.1 578 401-1060 19-708 (893)
7 KOG0291 WD40-repeat-containing 100.0 8.3E-50 1.8E-54 425.5 62.7 586 297-1017 19-718 (893)
8 KOG0318 WD40 repeat stress pro 100.0 1.5E-49 3.2E-54 407.2 59.0 541 327-965 52-602 (603)
9 KOG0306 WD40-repeat-containing 100.0 1.6E-48 3.4E-53 415.6 52.5 575 336-1012 23-668 (888)
10 KOG0306 WD40-repeat-containing 100.0 1.8E-48 3.9E-53 415.1 49.5 503 334-966 65-665 (888)
11 KOG0271 Notchless-like WD40 re 100.0 1.9E-50 4.1E-55 397.2 28.5 333 324-714 105-479 (480)
12 KOG0271 Notchless-like WD40 re 100.0 1.4E-49 3E-54 391.1 29.2 367 392-914 111-479 (480)
13 KOG1408 WD40 repeat protein [F 100.0 2E-41 4.4E-46 357.9 40.7 622 337-1062 40-714 (1080)
14 KOG1408 WD40 repeat protein [F 100.0 1.2E-40 2.7E-45 352.0 41.5 509 328-917 72-714 (1080)
15 KOG1063 RNA polymerase II elon 100.0 9.5E-39 2.1E-43 338.7 48.5 643 340-1061 20-763 (764)
16 KOG1063 RNA polymerase II elon 100.0 4.5E-39 9.8E-44 341.1 43.6 623 326-1008 46-763 (764)
17 KOG0272 U4/U6 small nuclear ri 100.0 2.1E-41 4.6E-46 338.8 23.0 284 331-650 172-458 (459)
18 KOG0273 Beta-transducin family 100.0 2E-39 4.4E-44 328.7 36.6 345 322-763 167-522 (524)
19 KOG1539 WD repeat protein [Gen 100.0 1.2E-36 2.6E-41 329.4 56.8 580 340-1059 39-646 (910)
20 KOG0279 G protein beta subunit 100.0 2.6E-39 5.6E-44 306.8 30.6 298 326-652 7-313 (315)
21 KOG0286 G-protein beta subunit 100.0 8.7E-39 1.9E-43 304.8 33.5 295 325-650 46-343 (343)
22 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-40 3.6E-45 332.4 22.4 285 394-714 173-458 (459)
23 KOG0276 Vesicle coat complex C 100.0 5.8E-38 1.3E-42 327.9 42.4 479 328-965 7-490 (794)
24 KOG1539 WD repeat protein [Gen 100.0 1.3E-35 2.9E-40 321.3 51.6 547 331-965 73-648 (910)
25 KOG0286 G-protein beta subunit 100.0 6.2E-37 1.3E-41 292.2 32.7 287 391-714 50-343 (343)
26 KOG0315 G-protein beta subunit 100.0 1E-36 2.2E-41 283.7 31.6 293 347-673 10-309 (311)
27 KOG0263 Transcription initiati 100.0 1.3E-36 2.7E-41 329.7 34.6 277 319-610 363-651 (707)
28 KOG0279 G protein beta subunit 100.0 1.1E-35 2.5E-40 282.0 32.1 296 731-1061 12-313 (315)
29 KOG0276 Vesicle coat complex C 100.0 1.9E-34 4.2E-39 301.7 44.4 465 392-1007 9-489 (794)
30 KOG0292 Vesicle coat complex C 100.0 5.4E-34 1.2E-38 309.4 47.8 583 331-1011 6-597 (1202)
31 KOG0295 WD40 repeat-containing 100.0 3E-36 6.5E-41 296.2 25.7 292 325-651 99-405 (406)
32 KOG2106 Uncharacterized conser 100.0 1.2E-32 2.5E-37 281.5 51.2 540 322-1007 54-625 (626)
33 KOG0296 Angio-associated migra 100.0 1.7E-34 3.7E-39 284.2 34.7 339 436-916 59-398 (399)
34 KOG0296 Angio-associated migra 100.0 5E-35 1.1E-39 287.9 30.8 335 324-715 54-397 (399)
35 KOG0285 Pleiotropic regulator 100.0 1.4E-35 3E-40 290.0 26.2 300 319-654 136-441 (460)
36 KOG0315 G-protein beta subunit 100.0 4E-34 8.6E-39 266.5 31.4 295 500-895 11-309 (311)
37 KOG0645 WD40 repeat protein [G 100.0 1.3E-33 2.7E-38 266.9 32.3 292 326-652 6-311 (312)
38 KOG0292 Vesicle coat complex C 100.0 4.1E-32 8.9E-37 294.9 45.4 499 392-1008 5-518 (1202)
39 KOG0273 Beta-transducin family 100.0 1.2E-33 2.5E-38 287.1 30.1 279 335-652 236-523 (524)
40 KOG2106 Uncharacterized conser 100.0 4E-31 8.7E-36 270.3 48.4 524 401-1060 70-625 (626)
41 KOG0265 U5 snRNP-specific prot 100.0 2.3E-33 5E-38 269.1 27.7 290 328-649 41-335 (338)
42 KOG2048 WD40 repeat protein [G 100.0 5.4E-30 1.2E-34 272.4 55.0 550 396-1061 25-601 (691)
43 KOG0316 Conserved WD40 repeat- 100.0 1.9E-33 4.1E-38 259.6 24.8 292 321-650 4-297 (307)
44 KOG0265 U5 snRNP-specific prot 100.0 3.9E-33 8.4E-38 267.6 27.6 286 392-712 43-334 (338)
45 KOG0266 WD40 repeat-containing 100.0 8.8E-33 1.9E-37 313.6 33.1 294 327-652 151-454 (456)
46 KOG0295 WD40 repeat-containing 100.0 2.1E-33 4.6E-38 276.2 23.4 285 392-714 104-404 (406)
47 KOG0285 Pleiotropic regulator 100.0 1.3E-32 2.9E-37 269.2 26.6 294 391-764 146-439 (460)
48 KOG0284 Polyadenylation factor 100.0 8.9E-34 1.9E-38 282.7 18.1 286 331-652 93-380 (464)
49 KOG0293 WD40 repeat-containing 100.0 5.5E-33 1.2E-37 276.9 22.6 292 391-716 219-513 (519)
50 KOG0282 mRNA splicing factor [ 100.0 8.4E-34 1.8E-38 289.6 17.2 295 322-650 202-503 (503)
51 KOG0645 WD40 repeat protein [G 100.0 3.9E-31 8.6E-36 250.1 32.0 293 731-1061 11-311 (312)
52 KOG2048 WD40 repeat protein [G 100.0 1.5E-28 3.2E-33 261.5 53.1 505 440-1064 24-551 (691)
53 KOG0263 Transcription initiati 100.0 2.7E-32 5.8E-37 296.3 23.9 264 733-1010 377-651 (707)
54 cd00200 WD40 WD40 domain, foun 100.0 1.4E-30 3.1E-35 283.9 36.4 287 328-650 3-289 (289)
55 KOG0281 Beta-TrCP (transducin 100.0 6.7E-33 1.5E-37 269.8 15.3 276 333-656 196-481 (499)
56 KOG0284 Polyadenylation factor 100.0 3.9E-32 8.4E-37 271.0 18.8 280 623-1007 97-379 (464)
57 KOG1445 Tumor-specific antigen 100.0 6.3E-30 1.4E-34 267.6 34.1 683 325-1074 70-857 (1012)
58 KOG0266 WD40 repeat-containing 100.0 2.9E-30 6.3E-35 293.0 32.5 291 394-716 157-454 (456)
59 KOG0282 mRNA splicing factor [ 100.0 2.4E-31 5.2E-36 271.7 18.0 290 391-714 209-503 (503)
60 KOG0316 Conserved WD40 repeat- 100.0 3.4E-30 7.3E-35 238.2 23.5 271 390-678 11-284 (307)
61 KOG0278 Serine/threonine kinas 100.0 6.7E-31 1.5E-35 244.9 18.5 291 328-657 8-302 (334)
62 KOG0281 Beta-TrCP (transducin 100.0 1.8E-31 3.8E-36 259.9 14.3 276 396-723 197-484 (499)
63 PLN00181 protein SPA1-RELATED; 100.0 7.1E-29 1.5E-33 304.8 39.6 294 330-651 479-792 (793)
64 cd00200 WD40 WD40 domain, foun 100.0 2.5E-28 5.4E-33 266.1 35.3 285 392-714 5-289 (289)
65 KOG0288 WD40 repeat protein Ti 100.0 3.2E-30 7E-35 257.9 17.9 298 320-650 161-459 (459)
66 KOG0275 Conserved WD40 repeat- 100.0 6.2E-30 1.4E-34 246.7 17.6 290 733-1059 212-507 (508)
67 KOG0310 Conserved WD40 repeat- 100.0 7.4E-29 1.6E-33 254.2 26.3 287 329-652 22-309 (487)
68 KOG0640 mRNA cleavage stimulat 100.0 2.7E-28 6E-33 234.4 27.6 316 324-652 102-426 (430)
69 PLN00181 protein SPA1-RELATED; 100.0 1.6E-27 3.4E-32 292.9 41.0 322 356-763 457-792 (793)
70 KOG0973 Histone transcription 100.0 1.7E-28 3.7E-33 276.3 29.0 307 332-654 11-357 (942)
71 KOG1407 WD40 repeat protein [F 100.0 7.6E-28 1.7E-32 226.5 27.1 279 328-643 14-293 (313)
72 KOG0643 Translation initiation 100.0 1.4E-27 3.1E-32 225.3 27.2 287 329-653 5-318 (327)
73 KOG0278 Serine/threonine kinas 100.0 4.4E-29 9.4E-34 232.8 16.9 286 392-719 10-300 (334)
74 KOG1446 Histone H3 (Lys4) meth 100.0 1.7E-26 3.8E-31 225.0 34.0 287 330-652 10-303 (311)
75 KOG0643 Translation initiation 100.0 3.6E-27 7.7E-32 222.7 27.4 286 391-716 5-317 (327)
76 KOG0283 WD40 repeat-containing 100.0 6E-28 1.3E-32 265.2 25.4 310 325-654 257-578 (712)
77 KOG0313 Microtubule binding pr 100.0 2.3E-27 4.9E-32 235.2 26.1 282 332-652 103-418 (423)
78 KOG0641 WD40 repeat protein [G 100.0 3.8E-26 8.3E-31 209.6 32.1 308 325-652 24-349 (350)
79 KOG0640 mRNA cleavage stimulat 100.0 9.6E-28 2.1E-32 230.7 21.4 307 622-1008 112-426 (430)
80 PTZ00421 coronin; Provisional 100.0 2.8E-26 6E-31 258.2 36.0 289 333-634 19-315 (493)
81 KOG0274 Cdc4 and related F-box 100.0 1.2E-26 2.6E-31 260.7 29.5 284 332-660 206-490 (537)
82 KOG0772 Uncharacterized conser 100.0 3.8E-27 8.1E-32 242.0 23.1 309 319-652 152-487 (641)
83 KOG0973 Histone transcription 100.0 1.4E-26 3.1E-31 261.0 28.5 305 733-1065 12-359 (942)
84 KOG0310 Conserved WD40 repeat- 100.0 2.4E-26 5.1E-31 236.0 25.9 282 733-1060 25-308 (487)
85 KOG0305 Anaphase promoting com 100.0 3.5E-26 7.6E-31 245.7 28.1 279 337-654 180-463 (484)
86 KOG1446 Histone H3 (Lys4) meth 100.0 5.2E-25 1.1E-29 214.8 33.3 273 392-677 10-288 (311)
87 KOG0313 Microtubule binding pr 100.0 3E-26 6.5E-31 227.3 25.0 280 394-715 103-417 (423)
88 KOG0647 mRNA export protein (c 100.0 8E-26 1.7E-30 217.6 27.0 276 333-641 26-312 (347)
89 PTZ00420 coronin; Provisional 99.9 7.9E-25 1.7E-29 246.7 37.8 237 392-634 70-318 (568)
90 KOG0283 WD40 repeat-containing 99.9 4.6E-26 9.9E-31 250.5 27.0 277 732-1011 265-579 (712)
91 KOG0300 WD40 repeat-containing 99.9 2.8E-26 6E-31 221.1 21.8 297 325-654 139-478 (481)
92 KOG0299 U3 snoRNP-associated p 99.9 7.1E-26 1.5E-30 230.5 25.8 293 327-641 135-444 (479)
93 KOG1407 WD40 repeat protein [F 99.9 2.3E-25 5E-30 209.9 27.0 253 392-659 16-268 (313)
94 KOG0277 Peroxisomal targeting 99.9 4.8E-26 1E-30 213.5 21.5 285 337-651 11-308 (311)
95 KOG2096 WD40 repeat protein [G 99.9 1.5E-25 3.3E-30 216.6 25.4 313 657-1010 79-404 (420)
96 KOG0641 WD40 repeat protein [G 99.9 1.5E-24 3.2E-29 199.3 30.5 308 733-1061 31-349 (350)
97 KOG0301 Phospholipase A2-activ 99.9 1.6E-25 3.5E-30 238.9 27.8 284 325-654 5-290 (745)
98 KOG1963 WD40 repeat protein [G 99.9 1.3E-23 2.7E-28 231.9 43.5 570 392-1064 12-653 (792)
99 KOG0772 Uncharacterized conser 99.9 9.8E-26 2.1E-30 231.7 24.8 298 732-1064 165-491 (641)
100 KOG0308 Conserved WD40 repeat- 99.9 3.9E-26 8.4E-31 241.5 22.2 353 332-716 19-393 (735)
101 KOG0288 WD40 repeat protein Ti 99.9 1.2E-26 2.7E-31 232.4 17.5 285 392-714 171-459 (459)
102 PTZ00421 coronin; Provisional 99.9 1.2E-24 2.7E-29 244.9 33.9 270 395-674 19-313 (493)
103 KOG0294 WD40 repeat-containing 99.9 1.7E-24 3.6E-29 209.8 28.2 241 799-1063 40-283 (362)
104 KOG0299 U3 snoRNP-associated p 99.9 6.1E-25 1.3E-29 223.8 26.2 250 392-654 138-412 (479)
105 KOG0274 Cdc4 and related F-box 99.9 5.1E-25 1.1E-29 247.6 27.7 280 394-721 206-487 (537)
106 KOG0268 Sof1-like rRNA process 99.9 3.2E-26 7E-31 225.4 15.3 293 324-656 56-349 (433)
107 KOG1445 Tumor-specific antigen 99.9 8.6E-24 1.9E-28 221.9 34.3 217 390-612 73-297 (1012)
108 KOG0308 Conserved WD40 repeat- 99.9 1.6E-25 3.5E-30 236.9 20.9 242 401-654 29-287 (735)
109 KOG0647 mRNA export protein (c 99.9 2.2E-24 4.8E-29 207.8 24.5 274 392-678 23-307 (347)
110 KOG0277 Peroxisomal targeting 99.9 1.1E-24 2.3E-29 204.6 21.7 200 801-1007 103-308 (311)
111 KOG0289 mRNA splicing factor [ 99.9 7.8E-24 1.7E-28 213.5 28.5 284 335-651 220-505 (506)
112 KOG0289 mRNA splicing factor [ 99.9 4E-24 8.7E-29 215.6 25.5 281 397-714 220-504 (506)
113 KOG0305 Anaphase promoting com 99.9 2.2E-24 4.9E-29 231.9 25.3 275 400-717 181-462 (484)
114 KOG1036 Mitotic spindle checkp 99.9 1.3E-23 2.8E-28 203.7 27.3 272 334-642 13-294 (323)
115 KOG1274 WD40 repeat protein [G 99.9 7.5E-21 1.6E-25 210.2 51.2 279 331-649 10-297 (933)
116 KOG0294 WD40 repeat-containing 99.9 2.4E-23 5.2E-28 201.8 27.9 243 392-654 39-283 (362)
117 KOG0268 Sof1-like rRNA process 99.9 4.3E-25 9.3E-30 217.5 15.8 284 436-765 61-346 (433)
118 KOG1332 Vesicle coat complex C 99.9 1.1E-24 2.4E-29 203.3 17.6 252 391-652 6-286 (299)
119 KOG0300 WD40 repeat-containing 99.9 8.6E-24 1.9E-28 204.0 22.9 321 620-1010 146-478 (481)
120 PTZ00420 coronin; Provisional 99.9 8.4E-23 1.8E-27 230.4 34.7 248 414-675 50-317 (568)
121 KOG2096 WD40 repeat protein [G 99.9 5E-23 1.1E-27 199.4 26.9 298 326-652 78-402 (420)
122 KOG1274 WD40 repeat protein [G 99.9 4.1E-20 8.9E-25 204.4 50.9 275 393-684 10-290 (933)
123 KOG0301 Phospholipase A2-activ 99.9 2.7E-23 5.9E-28 222.0 24.9 275 731-1061 11-288 (745)
124 KOG1963 WD40 repeat protein [G 99.9 8.8E-21 1.9E-25 209.7 43.1 516 437-1067 12-589 (792)
125 KOG0639 Transducin-like enhanc 99.9 2.6E-23 5.6E-28 212.9 20.5 287 332-651 417-703 (705)
126 KOG0639 Transducin-like enhanc 99.9 3.5E-23 7.7E-28 211.9 21.0 282 733-1060 418-703 (705)
127 KOG1332 Vesicle coat complex C 99.9 3.7E-23 8E-28 193.2 19.1 256 328-608 5-286 (299)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.1E-21 8.9E-26 210.8 37.6 289 349-673 3-299 (300)
129 KOG1273 WD40 repeat protein [G 99.9 2.8E-22 6E-27 194.1 24.3 300 321-654 12-324 (405)
130 KOG2055 WD40 repeat protein [G 99.9 2.8E-22 6.2E-27 204.2 25.3 289 578-1008 213-512 (514)
131 KOG0264 Nucleosome remodeling 99.9 8.5E-23 1.8E-27 208.8 21.6 264 330-608 120-404 (422)
132 KOG2055 WD40 repeat protein [G 99.9 2.7E-22 5.7E-27 204.4 24.5 288 334-652 213-512 (514)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1E-20 2.3E-25 207.6 39.6 279 591-1017 2-288 (300)
134 KOG0646 WD40 repeat protein [G 99.9 2.6E-22 5.6E-27 205.3 24.3 293 349-676 9-331 (476)
135 KOG4283 Transcription-coupled 99.9 8.7E-22 1.9E-26 188.7 25.2 321 330-716 39-365 (397)
136 KOG1036 Mitotic spindle checkp 99.9 1.7E-21 3.7E-26 189.1 26.2 270 395-682 12-292 (323)
137 KOG1273 WD40 repeat protein [G 99.9 7.4E-22 1.6E-26 191.1 22.4 282 399-716 26-322 (405)
138 KOG1538 Uncharacterized conser 99.9 1E-20 2.2E-25 200.1 31.1 450 443-961 14-520 (1081)
139 KOG4283 Transcription-coupled 99.9 4.4E-21 9.4E-26 184.0 25.7 306 732-1061 41-365 (397)
140 KOG0646 WD40 repeat protein [G 99.9 1.5E-21 3.2E-26 199.7 23.6 225 396-633 81-330 (476)
141 KOG0650 WD40 repeat nucleolar 99.9 2.1E-21 4.6E-26 203.6 23.5 322 318-713 384-732 (733)
142 KOG4328 WD40 protein [Function 99.9 3.8E-21 8.1E-26 196.0 24.6 305 325-652 177-495 (498)
143 KOG1538 Uncharacterized conser 99.9 6.4E-20 1.4E-24 194.2 34.5 273 336-653 14-294 (1081)
144 KOG0264 Nucleosome remodeling 99.9 2.6E-21 5.7E-26 197.9 23.3 253 392-653 120-405 (422)
145 KOG0267 Microtubule severing p 99.9 1E-22 2.2E-27 218.3 10.4 236 392-643 24-259 (825)
146 KOG0269 WD40 repeat-containing 99.9 5.3E-21 1.2E-25 207.1 20.0 244 739-1012 92-344 (839)
147 KOG0650 WD40 repeat nucleolar 99.9 1.6E-20 3.5E-25 197.1 22.7 320 569-962 394-732 (733)
148 KOG1009 Chromatin assembly com 99.9 5.5E-20 1.2E-24 184.9 24.6 308 329-656 9-376 (434)
149 KOG0269 WD40 repeat-containing 99.9 2E-20 4.2E-25 202.7 18.9 284 397-712 40-336 (839)
150 KOG0267 Microtubule severing p 99.9 1.8E-21 3.9E-26 208.9 10.7 239 328-600 22-260 (825)
151 KOG2445 Nuclear pore complex c 99.8 5.8E-19 1.2E-23 171.1 25.2 268 331-619 10-332 (361)
152 KOG0321 WD40 repeat-containing 99.8 1.6E-19 3.6E-24 191.3 23.4 286 747-1061 65-391 (720)
153 KOG2445 Nuclear pore complex c 99.8 5.6E-19 1.2E-23 171.2 25.0 256 392-653 9-319 (361)
154 KOG0321 WD40 repeat-containing 99.8 1.5E-19 3.1E-24 191.7 22.2 287 344-654 61-393 (720)
155 KOG1034 Transcriptional repres 99.8 4.3E-19 9.3E-24 173.4 23.7 298 328-652 32-383 (385)
156 KOG1034 Transcriptional repres 99.8 6.7E-19 1.5E-23 172.1 25.1 299 733-1061 37-383 (385)
157 KOG0270 WD40 repeat-containing 99.8 9.1E-20 2E-24 185.5 19.6 243 408-658 192-455 (463)
158 COG2319 FOG: WD40 repeat [Gene 99.8 2E-16 4.3E-21 184.2 48.8 372 437-917 61-443 (466)
159 COG2319 FOG: WD40 repeat [Gene 99.8 6.4E-17 1.4E-21 188.3 44.7 371 329-765 60-443 (466)
160 KOG0307 Vesicle coat complex C 99.8 2.4E-20 5.3E-25 211.8 14.8 296 337-654 9-329 (1049)
161 KOG4378 Nuclear protein COP1 [ 99.8 8.4E-19 1.8E-23 180.0 22.9 294 593-990 5-305 (673)
162 KOG1912 WD40 repeat protein [G 99.8 3.2E-17 6.8E-22 177.5 35.1 606 334-1013 15-746 (1062)
163 KOG4378 Nuclear protein COP1 [ 99.8 9.8E-19 2.1E-23 179.5 22.2 293 350-676 7-305 (673)
164 KOG4328 WD40 protein [Function 99.8 9.5E-19 2.1E-23 178.6 21.4 308 654-1009 176-496 (498)
165 KOG4497 Uncharacterized conser 99.8 2E-18 4.4E-23 168.4 22.5 409 401-909 13-425 (447)
166 KOG2919 Guanine nucleotide-bin 99.8 6.6E-18 1.4E-22 164.6 23.1 289 338-643 53-361 (406)
167 KOG0302 Ribosome Assembly prot 99.8 3.4E-18 7.4E-23 170.2 21.0 263 330-605 147-435 (440)
168 KOG0302 Ribosome Assembly prot 99.8 4.2E-18 9.1E-23 169.5 21.2 250 800-1056 149-434 (440)
169 KOG0303 Actin-binding protein 99.8 4.9E-18 1.1E-22 170.0 21.6 237 391-633 76-320 (472)
170 KOG1009 Chromatin assembly com 99.8 2.8E-17 6.1E-22 165.7 26.7 300 734-1061 13-372 (434)
171 KOG2919 Guanine nucleotide-bin 99.8 1.3E-17 2.9E-22 162.6 21.7 230 744-999 121-361 (406)
172 KOG1524 WD40 repeat-containing 99.8 2.7E-16 5.8E-21 163.4 31.2 496 394-1064 12-526 (737)
173 KOG0644 Uncharacterized conser 99.8 6E-19 1.3E-23 192.1 12.3 285 327-657 183-473 (1113)
174 KOG0270 WD40 repeat-containing 99.8 8.5E-18 1.8E-22 171.3 19.6 254 346-613 192-454 (463)
175 KOG1524 WD40 repeat-containing 99.8 2.9E-16 6.4E-21 163.1 31.1 496 332-966 12-524 (737)
176 KOG0303 Actin-binding protein 99.8 9.7E-18 2.1E-22 167.9 19.3 239 329-590 76-321 (472)
177 KOG1912 WD40 repeat protein [G 99.8 3.5E-16 7.5E-21 169.5 32.1 561 396-1062 15-657 (1062)
178 KOG4497 Uncharacterized conser 99.8 8.6E-17 1.9E-21 157.1 22.9 337 535-1000 14-424 (447)
179 KOG4227 WD40 repeat protein [G 99.8 4.1E-17 8.9E-22 162.6 20.0 302 326-652 48-387 (609)
180 KOG1334 WD40 repeat protein [G 99.8 5.2E-18 1.1E-22 174.5 13.6 302 325-654 133-468 (559)
181 KOG0307 Vesicle coat complex C 99.8 4.6E-18 1E-22 193.5 13.9 251 336-611 66-330 (1049)
182 KOG0642 Cell-cycle nuclear pro 99.7 1.8E-17 3.9E-22 174.1 16.0 262 391-663 289-572 (577)
183 KOG1310 WD40 repeat protein [G 99.7 1E-16 2.2E-21 167.0 20.9 246 435-725 44-312 (758)
184 KOG0649 WD40 repeat protein [G 99.7 1.9E-15 4.2E-20 141.6 26.8 286 736-1059 12-314 (325)
185 KOG1188 WD40 repeat protein [G 99.7 8.8E-17 1.9E-21 158.5 18.1 292 457-764 42-346 (376)
186 KOG1007 WD repeat protein TSSC 99.7 3.5E-16 7.6E-21 150.3 20.9 260 328-608 57-361 (370)
187 KOG0322 G-protein beta subunit 99.7 6.6E-17 1.4E-21 153.4 15.8 289 323-651 3-322 (323)
188 KOG0642 Cell-cycle nuclear pro 99.7 6.1E-17 1.3E-21 170.2 16.6 270 327-619 287-572 (577)
189 PRK11028 6-phosphogluconolacto 99.7 1.4E-14 3E-19 160.0 36.2 198 806-1008 83-304 (330)
190 KOG4227 WD40 repeat protein [G 99.7 6.3E-16 1.4E-20 154.2 21.6 293 392-715 52-386 (609)
191 KOG1188 WD40 repeat protein [G 99.7 4.6E-16 9.9E-21 153.5 20.1 277 349-653 42-347 (376)
192 KOG0649 WD40 repeat protein [G 99.7 3.2E-15 6.9E-20 140.2 24.5 278 336-649 12-313 (325)
193 KOG0290 Conserved WD40 repeat- 99.7 1.8E-15 3.9E-20 145.7 23.3 292 327-648 38-361 (364)
194 KOG2110 Uncharacterized conser 99.7 2.5E-14 5.5E-19 143.1 32.0 242 396-654 5-250 (391)
195 PRK11028 6-phosphogluconolacto 99.7 2.1E-14 4.5E-19 158.6 35.0 275 348-652 3-304 (330)
196 KOG0644 Uncharacterized conser 99.7 3.1E-17 6.8E-22 178.9 11.2 288 566-919 181-471 (1113)
197 KOG1007 WD repeat protein TSSC 99.7 2E-15 4.3E-20 145.2 22.0 184 803-1008 171-361 (370)
198 KOG0322 G-protein beta subunit 99.7 2.2E-16 4.8E-21 149.9 15.2 287 391-715 9-322 (323)
199 KOG2110 Uncharacterized conser 99.7 1.1E-14 2.4E-19 145.5 27.3 241 802-1064 5-251 (391)
200 KOG0771 Prolactin regulatory e 99.7 3.5E-16 7.6E-21 159.4 15.2 199 806-1010 148-356 (398)
201 KOG1517 Guanine nucleotide bin 99.7 7.5E-15 1.6E-19 164.7 26.4 303 579-1011 1065-1384(1387)
202 KOG0290 Conserved WD40 repeat- 99.7 2.6E-14 5.5E-19 137.9 24.0 242 800-1051 94-356 (364)
203 PRK01742 tolB translocation pr 99.7 8.3E-15 1.8E-19 166.6 24.4 235 356-633 183-426 (429)
204 KOG1240 Protein kinase contain 99.7 5.1E-14 1.1E-18 161.0 29.5 256 392-655 1044-1337(1431)
205 PF02239 Cytochrom_D1: Cytochr 99.7 2.6E-13 5.7E-18 148.4 34.2 318 554-974 15-356 (369)
206 PF02239 Cytochrom_D1: Cytochr 99.7 1.1E-12 2.3E-17 143.7 38.2 332 455-922 6-353 (369)
207 KOG0771 Prolactin regulatory e 99.6 3.2E-15 7E-20 152.5 15.9 197 847-1062 148-355 (398)
208 KOG1587 Cytoplasmic dynein int 99.6 4E-14 8.6E-19 158.3 25.8 250 395-654 241-518 (555)
209 KOG1517 Guanine nucleotide bin 99.6 4.2E-14 9.2E-19 158.9 25.4 297 332-654 1062-1383(1387)
210 KOG1334 WD40 repeat protein [G 99.6 2.5E-15 5.4E-20 155.1 13.3 312 436-877 137-469 (559)
211 PRK01742 tolB translocation pr 99.6 2.3E-14 5E-19 163.0 21.7 232 319-589 188-426 (429)
212 KOG2139 WD40 repeat protein [G 99.6 4.9E-13 1.1E-17 133.2 27.5 288 336-652 100-431 (445)
213 KOG2394 WD40 protein DMR-N9 [G 99.6 6.7E-14 1.5E-18 146.3 22.4 169 811-988 182-384 (636)
214 KOG0974 WD-repeat protein WDR6 99.6 1.5E-11 3.3E-16 139.7 42.7 199 443-654 89-290 (967)
215 COG4946 Uncharacterized protei 99.6 1.4E-10 3E-15 119.9 45.7 104 801-906 400-508 (668)
216 PF04762 IKI3: IKI3 family; I 99.6 1.6E-09 3.5E-14 131.7 62.9 510 394-1061 73-639 (928)
217 KOG0974 WD-repeat protein WDR6 99.6 1.7E-11 3.6E-16 139.4 41.7 200 336-565 89-290 (967)
218 KOG2111 Uncharacterized conser 99.6 2.9E-12 6.4E-17 125.9 31.0 241 398-654 7-258 (346)
219 KOG1240 Protein kinase contain 99.6 1.2E-13 2.5E-18 158.1 24.2 362 654-1059 1038-1431(1431)
220 KOG1587 Cytoplasmic dynein int 99.6 1.6E-13 3.5E-18 153.4 24.7 252 334-609 242-517 (555)
221 KOG1832 HIV-1 Vpr-binding prot 99.6 2.9E-15 6.3E-20 164.3 9.9 339 171-642 1014-1379(1516)
222 KOG1310 WD40 repeat protein [G 99.6 2.4E-14 5.1E-19 149.6 15.7 245 326-616 42-311 (758)
223 KOG2041 WD40 repeat protein [G 99.6 3.2E-12 7E-17 137.7 32.1 510 395-1008 13-619 (1189)
224 KOG2111 Uncharacterized conser 99.6 1E-12 2.2E-17 129.1 24.8 239 803-1064 6-259 (346)
225 KOG2139 WD40 repeat protein [G 99.6 1.5E-12 3.3E-17 129.7 25.9 260 734-1008 140-431 (445)
226 PRK03629 tolB translocation pr 99.6 1.5E-12 3.3E-17 147.6 29.4 238 357-632 179-427 (429)
227 KOG1523 Actin-related protein 99.6 6.8E-13 1.5E-17 130.3 22.6 232 395-639 9-266 (361)
228 PRK05137 tolB translocation pr 99.5 2.3E-12 5.1E-17 147.3 29.4 237 357-632 182-432 (435)
229 KOG1272 WD40-repeat-containing 99.5 2.1E-14 4.5E-19 147.4 11.1 270 395-687 128-402 (545)
230 KOG1272 WD40-repeat-containing 99.5 3.1E-14 6.8E-19 146.1 11.9 273 336-649 131-406 (545)
231 KOG2041 WD40 repeat protein [G 99.5 6E-11 1.3E-15 128.1 37.1 533 336-966 16-620 (1189)
232 PRK03629 tolB translocation pr 99.5 1.2E-12 2.5E-17 148.6 25.8 234 319-588 183-427 (429)
233 KOG2321 WD40 repeat protein [G 99.5 1.6E-12 3.4E-17 137.2 24.1 283 332-653 49-344 (703)
234 PF04762 IKI3: IKI3 family; I 99.5 5.3E-09 1.2E-13 127.3 58.1 569 333-1013 74-689 (928)
235 KOG1523 Actin-related protein 99.5 1.4E-12 3.1E-17 128.1 21.9 205 801-1011 9-239 (361)
236 KOG2315 Predicted translation 99.5 1.8E-11 3.8E-16 129.8 31.2 286 336-660 36-352 (566)
237 COG5354 Uncharacterized protei 99.5 6.6E-12 1.4E-16 131.1 27.6 282 334-654 32-350 (561)
238 PRK04922 tolB translocation pr 99.5 2.5E-12 5.5E-17 146.7 26.1 238 357-632 184-432 (433)
239 PRK04922 tolB translocation pr 99.5 1.6E-12 3.5E-17 148.3 24.1 233 319-588 188-432 (433)
240 PRK02889 tolB translocation pr 99.5 2.7E-12 5.9E-17 145.8 25.5 223 392-632 191-424 (427)
241 PRK02889 tolB translocation pr 99.5 2.4E-12 5.1E-17 146.3 24.6 234 320-589 181-425 (427)
242 PF10282 Lactonase: Lactonase, 99.5 3.2E-10 7E-15 125.0 40.6 210 804-1015 88-331 (345)
243 COG5354 Uncharacterized protei 99.5 8.6E-11 1.9E-15 122.9 32.3 358 512-1000 15-421 (561)
244 KOG2394 WD40 protein DMR-N9 [G 99.5 2E-12 4.4E-17 135.4 20.1 277 336-656 125-456 (636)
245 KOG3881 Uncharacterized conser 99.5 4.7E-12 1E-16 128.0 21.8 272 334-632 55-341 (412)
246 PRK05137 tolB translocation pr 99.5 7.2E-12 1.6E-16 143.3 25.5 233 320-588 187-432 (435)
247 COG2706 3-carboxymuconate cycl 99.4 8E-10 1.7E-14 112.0 34.4 281 707-1013 15-328 (346)
248 KOG2314 Translation initiation 99.4 1.3E-10 2.7E-15 122.6 28.5 327 531-1009 212-574 (698)
249 KOG2321 WD40 repeat protein [G 99.4 3.2E-11 6.8E-16 127.6 23.9 284 439-764 49-343 (703)
250 COG4946 Uncharacterized protei 99.4 1.2E-09 2.7E-14 113.0 34.2 171 813-997 331-507 (668)
251 KOG2315 Predicted translation 99.4 2.7E-10 5.8E-15 121.0 30.2 333 529-917 34-391 (566)
252 TIGR02658 TTQ_MADH_Hv methylam 99.4 3E-09 6.5E-14 113.3 37.5 205 806-1017 108-339 (352)
253 PF08662 eIF2A: Eukaryotic tra 99.4 4.3E-11 9.4E-16 118.7 21.0 155 847-1017 9-187 (194)
254 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.1E-09 2.3E-14 116.7 32.6 269 357-660 27-338 (352)
255 PRK01029 tolB translocation pr 99.4 1.2E-10 2.6E-15 131.4 27.0 237 324-590 174-426 (428)
256 KOG1409 Uncharacterized conser 99.4 6.3E-11 1.4E-15 117.7 21.3 340 566-1010 15-396 (404)
257 PRK01029 tolB translocation pr 99.4 2.8E-10 6.2E-15 128.4 29.2 243 357-634 165-426 (428)
258 KOG2314 Translation initiation 99.4 4.8E-10 1E-14 118.3 27.5 334 397-874 211-573 (698)
259 PF10282 Lactonase: Lactonase, 99.3 7.8E-09 1.7E-13 114.0 38.2 249 396-652 36-322 (345)
260 PRK00178 tolB translocation pr 99.3 1.8E-10 4E-15 132.2 26.2 229 325-588 189-427 (430)
261 PRK04792 tolB translocation pr 99.3 1.5E-10 3.3E-15 131.8 23.9 227 327-588 210-446 (448)
262 PRK04792 tolB translocation pr 99.3 5.1E-10 1.1E-14 127.5 27.8 223 392-632 213-446 (448)
263 PRK00178 tolB translocation pr 99.3 7.9E-10 1.7E-14 127.0 29.5 237 358-632 180-427 (430)
264 KOG3881 Uncharacterized conser 99.3 1.7E-10 3.7E-15 116.9 20.7 116 803-919 203-323 (412)
265 PF08662 eIF2A: Eukaryotic tra 99.3 1.6E-10 3.5E-15 114.6 20.4 164 399-571 8-186 (194)
266 COG2706 3-carboxymuconate cycl 99.3 8.9E-09 1.9E-13 104.6 32.5 252 801-1067 38-327 (346)
267 TIGR02800 propeller_TolB tol-p 99.3 2.5E-10 5.5E-15 131.1 24.6 215 325-572 180-405 (417)
268 TIGR02800 propeller_TolB tol-p 99.3 5.5E-10 1.2E-14 128.4 27.2 210 392-617 185-405 (417)
269 KOG1354 Serine/threonine prote 99.3 6.8E-10 1.5E-14 110.3 23.3 357 441-963 25-432 (433)
270 KOG1354 Serine/threonine prote 99.3 2.4E-10 5.2E-15 113.5 18.7 265 334-611 25-362 (433)
271 KOG1409 Uncharacterized conser 99.3 5.5E-11 1.2E-15 118.1 14.2 357 477-875 16-395 (404)
272 KOG4547 WD40 repeat-containing 99.2 2.3E-09 5E-14 115.1 23.3 194 405-609 2-221 (541)
273 KOG4547 WD40 repeat-containing 99.2 3E-09 6.5E-14 114.3 22.3 188 812-1009 3-221 (541)
274 TIGR03300 assembly_YfgL outer 99.2 3.1E-08 6.7E-13 111.7 31.9 183 457-654 67-261 (377)
275 KOG2659 LisH motif-containing 99.2 1.7E-10 3.6E-15 110.6 10.8 167 3-183 24-204 (228)
276 TIGR03300 assembly_YfgL outer 99.2 1.1E-07 2.4E-12 107.3 35.1 210 821-1059 153-377 (377)
277 PRK04043 tolB translocation pr 99.0 4.5E-08 9.9E-13 109.7 25.4 205 327-565 181-402 (419)
278 KOG0280 Uncharacterized conser 99.0 1.7E-08 3.7E-13 98.7 18.4 251 336-610 71-335 (339)
279 PLN02919 haloacid dehalogenase 99.0 1.9E-07 4.2E-12 116.4 32.7 260 738-1012 571-892 (1057)
280 KOG4190 Uncharacterized conser 99.0 3.7E-09 8E-14 111.1 12.2 244 392-651 731-987 (1034)
281 PLN02919 haloacid dehalogenase 99.0 3.1E-07 6.7E-12 114.6 31.2 255 806-1064 571-891 (1057)
282 KOG1897 Damage-specific DNA bi 99.0 0.00023 5.1E-09 82.1 53.8 619 332-1005 304-1001(1096)
283 KOG3617 WD40 and TPR repeat-co 99.0 2.7E-08 5.9E-13 110.2 18.7 506 337-970 18-590 (1416)
284 PF15492 Nbas_N: Neuroblastoma 99.0 3.3E-07 7.1E-12 90.6 24.0 209 808-1018 3-269 (282)
285 KOG0280 Uncharacterized conser 98.9 1.5E-07 3.3E-12 92.2 21.1 198 805-1010 124-335 (339)
286 KOG1064 RAVE (regulator of V-A 98.9 5.5E-09 1.2E-13 124.9 12.7 200 393-618 2205-2408(2439)
287 KOG4190 Uncharacterized conser 98.9 7.2E-09 1.6E-13 109.0 11.5 294 326-648 727-1032(1034)
288 KOG1064 RAVE (regulator of V-A 98.9 7.4E-09 1.6E-13 123.8 12.7 224 408-661 2180-2407(2439)
289 PRK11138 outer membrane biogen 98.9 3.1E-06 6.8E-11 95.8 32.3 220 814-1061 161-394 (394)
290 PRK04043 tolB translocation pr 98.9 1.2E-06 2.6E-11 98.3 27.7 212 824-1065 170-402 (419)
291 KOG0309 Conserved WD40 repeat- 98.9 2.1E-08 4.6E-13 109.5 12.8 212 388-609 106-340 (1081)
292 PF07433 DUF1513: Protein of u 98.8 6E-06 1.3E-10 84.8 28.9 205 806-1017 8-256 (305)
293 KOG1897 Damage-specific DNA bi 98.8 0.00077 1.7E-08 78.0 53.1 581 403-1065 264-946 (1096)
294 KOG3914 WD repeat protein WDR4 98.8 5.5E-08 1.2E-12 99.8 13.7 165 336-526 64-232 (390)
295 KOG3617 WD40 and TPR repeat-co 98.8 6.9E-07 1.5E-11 99.4 21.8 339 399-820 18-373 (1416)
296 PRK11138 outer membrane biogen 98.8 9.3E-06 2E-10 91.9 31.7 153 457-617 71-232 (394)
297 KOG3914 WD repeat protein WDR4 98.8 7.6E-08 1.6E-12 98.8 12.7 160 847-1018 66-233 (390)
298 PF07433 DUF1513: Protein of u 98.8 1.5E-05 3.3E-10 81.9 29.1 234 337-603 7-280 (305)
299 PF15492 Nbas_N: Neuroblastoma 98.8 6.7E-06 1.5E-10 81.5 25.2 248 338-619 1-270 (282)
300 KOG4532 WD40-like repeat conta 98.8 1.2E-06 2.5E-11 84.9 19.4 148 399-548 161-321 (344)
301 COG5170 CDC55 Serine/threonine 98.7 1.6E-07 3.5E-12 92.3 13.1 261 801-1064 25-370 (460)
302 KOG0309 Conserved WD40 repeat- 98.7 1.3E-07 2.8E-12 103.6 13.6 294 396-716 24-339 (1081)
303 PF08450 SGL: SMP-30/Gluconola 98.7 2.3E-05 5E-10 82.3 29.6 221 401-641 4-244 (246)
304 KOG1832 HIV-1 Vpr-binding prot 98.7 1.6E-08 3.4E-13 112.5 4.4 217 392-639 1097-1318(1516)
305 PF13360 PQQ_2: PQQ-like domai 98.7 7.2E-06 1.6E-10 86.0 24.5 223 822-1068 2-237 (238)
306 PF08450 SGL: SMP-30/Gluconola 98.6 6.6E-05 1.4E-09 78.8 30.8 219 339-597 4-244 (246)
307 PF06433 Me-amine-dh_H: Methyl 98.6 2.9E-05 6.2E-10 80.8 26.6 232 780-1017 69-329 (342)
308 KOG0882 Cyclophilin-related pe 98.6 9.7E-07 2.1E-11 91.6 15.7 298 733-1058 8-369 (558)
309 KOG4532 WD40-like repeat conta 98.6 1E-05 2.3E-10 78.5 21.3 202 815-1021 85-295 (344)
310 COG5170 CDC55 Serine/threonine 98.6 9.7E-07 2.1E-11 87.0 14.0 160 800-964 170-366 (460)
311 PF13360 PQQ_2: PQQ-like domai 98.6 1.6E-05 3.5E-10 83.4 23.9 195 813-1015 35-237 (238)
312 PF06433 Me-amine-dh_H: Methyl 98.6 7.8E-05 1.7E-09 77.6 27.6 282 555-884 17-330 (342)
313 KOG1920 IkappaB kinase complex 98.6 8.4E-05 1.8E-09 87.6 30.6 251 579-928 69-334 (1265)
314 KOG4714 Nucleoporin [Nuclear s 98.5 1.5E-06 3.3E-11 83.8 13.5 209 337-564 39-255 (319)
315 PRK02888 nitrous-oxide reducta 98.5 1.9E-05 4E-10 88.9 23.4 136 810-954 284-449 (635)
316 PRK02888 nitrous-oxide reducta 98.5 4.1E-05 9E-10 86.1 25.6 182 810-1009 200-405 (635)
317 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00098 2.1E-08 65.0 30.6 136 500-646 24-159 (354)
318 PF00400 WD40: WD domain, G-be 98.5 4.5E-07 9.8E-12 63.3 6.2 39 876-914 1-39 (39)
319 PF10607 CLTH: CTLH/CRA C-term 98.5 4.2E-07 9.1E-12 86.1 7.9 135 37-183 4-141 (145)
320 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.00017 3.7E-09 80.1 29.7 255 343-640 1-298 (353)
321 KOG1645 RING-finger-containing 98.5 2.2E-05 4.8E-10 80.8 20.1 251 391-652 188-461 (463)
322 KOG0882 Cyclophilin-related pe 98.4 5E-06 1.1E-10 86.5 15.4 259 395-661 8-314 (558)
323 KOG2695 WD40 repeat protein [G 98.4 7E-07 1.5E-11 89.5 8.7 169 337-529 214-388 (425)
324 KOG4714 Nucleoporin [Nuclear s 98.4 2.8E-06 6E-11 82.1 12.4 207 838-1059 84-316 (319)
325 KOG1275 PAB-dependent poly(A) 98.4 5.2E-06 1.1E-10 93.9 15.7 180 813-1006 146-340 (1118)
326 KOG1920 IkappaB kinase complex 98.4 8.7E-05 1.9E-09 87.4 25.5 282 334-652 68-365 (1265)
327 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00066 1.4E-08 66.1 27.2 115 342-482 18-132 (354)
328 PF00400 WD40: WD domain, G-be 98.4 7.9E-07 1.7E-11 62.1 5.5 38 325-363 2-39 (39)
329 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00029 6.3E-09 78.2 28.7 303 538-904 1-345 (353)
330 KOG3621 WD40 repeat-containing 98.4 8.8E-05 1.9E-09 82.4 23.4 138 335-493 34-178 (726)
331 KOG0396 Uncharacterized conser 98.3 2.3E-06 5E-11 87.1 9.8 167 6-184 116-291 (389)
332 KOG2695 WD40 repeat protein [G 98.3 1.7E-06 3.7E-11 86.9 8.2 151 817-974 228-385 (425)
333 PF14583 Pectate_lyase22: Olig 98.3 0.0023 5E-08 68.3 31.8 278 341-650 42-379 (386)
334 KOG1645 RING-finger-containing 98.3 5.1E-05 1.1E-09 78.3 18.1 250 327-608 186-461 (463)
335 KOG2114 Vacuolar assembly/sort 98.2 0.00011 2.4E-09 83.3 20.1 207 850-1070 30-252 (933)
336 KOG2066 Vacuolar assembly/sort 98.2 4.1E-05 9E-10 86.1 16.0 188 844-1061 40-233 (846)
337 KOG2114 Vacuolar assembly/sort 98.1 0.00042 9E-09 78.9 22.3 202 808-1016 29-251 (933)
338 cd00216 PQQ_DH Dehydrogenases 98.1 0.0038 8.1E-08 72.5 31.4 138 500-644 62-238 (488)
339 KOG1275 PAB-dependent poly(A) 98.1 6.5E-05 1.4E-09 85.4 15.5 187 457-653 149-343 (1118)
340 smart00668 CTLH C-terminal to 98.1 2E-06 4.3E-11 66.3 2.6 53 37-90 4-56 (58)
341 PRK13616 lipoprotein LpqB; Pro 98.1 0.00082 1.8E-08 78.4 24.9 222 844-1080 350-587 (591)
342 KOG2066 Vacuolar assembly/sort 98.0 0.00043 9.2E-09 78.2 20.5 186 736-965 41-233 (846)
343 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.032 7E-07 65.0 36.4 61 823-885 441-501 (527)
344 COG0823 TolB Periplasmic compo 98.0 0.00064 1.4E-08 75.9 20.8 198 324-550 182-390 (425)
345 PF02897 Peptidase_S9_N: Proly 98.0 0.013 2.9E-07 67.0 32.1 252 336-614 125-410 (414)
346 PF14583 Pectate_lyase22: Olig 97.9 0.013 2.7E-07 62.9 28.4 228 402-643 41-303 (386)
347 PF11768 DUF3312: Protein of u 97.9 0.0054 1.2E-07 67.9 25.7 110 939-1061 208-329 (545)
348 PF08596 Lgl_C: Lethal giant l 97.9 0.0033 7.1E-08 69.5 24.6 245 736-1019 3-301 (395)
349 cd00216 PQQ_DH Dehydrogenases 97.9 0.0056 1.2E-07 71.1 28.0 248 350-621 113-437 (488)
350 PF06977 SdiA-regulated: SdiA- 97.9 0.0052 1.1E-07 62.9 23.8 197 328-547 15-239 (248)
351 PF06977 SdiA-regulated: SdiA- 97.9 0.0054 1.2E-07 62.7 23.6 216 837-1058 15-247 (248)
352 PF04053 Coatomer_WDAD: Coatom 97.8 0.0039 8.4E-08 69.9 23.8 225 392-653 28-263 (443)
353 PF11768 DUF3312: Protein of u 97.8 0.0007 1.5E-08 74.6 17.3 115 802-919 205-332 (545)
354 COG0823 TolB Periplasmic compo 97.8 0.0034 7.4E-08 70.2 23.1 193 437-643 188-390 (425)
355 smart00667 LisH Lissencephaly 97.8 3E-05 6.5E-10 52.0 4.1 32 4-35 2-33 (34)
356 PF08596 Lgl_C: Lethal giant l 97.8 0.0074 1.6E-07 66.8 24.1 254 336-596 3-324 (395)
357 PF02897 Peptidase_S9_N: Proly 97.7 0.026 5.5E-07 64.7 29.3 249 398-656 125-408 (414)
358 PF08513 LisH: LisH; InterPro 97.7 5.5E-05 1.2E-09 46.6 3.8 27 6-32 1-27 (27)
359 PF04841 Vps16_N: Vps16, N-ter 97.7 0.023 5E-07 63.9 27.7 199 808-1018 34-256 (410)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.12 2.7E-06 60.2 34.3 105 554-661 78-198 (527)
361 COG3391 Uncharacterized conser 97.7 0.013 2.9E-07 65.5 25.4 206 805-1017 76-292 (381)
362 PF04053 Coatomer_WDAD: Coatom 97.7 0.0094 2E-07 66.9 23.8 218 802-1061 32-262 (443)
363 PF04841 Vps16_N: Vps16, N-ter 97.6 0.048 1E-06 61.4 28.7 231 397-662 81-324 (410)
364 KOG3621 WD40 repeat-containing 97.6 0.00047 1E-08 76.8 12.1 209 801-1017 32-254 (726)
365 PRK13616 lipoprotein LpqB; Pro 97.6 0.0041 8.9E-08 72.7 19.9 183 803-1000 350-560 (591)
366 COG3391 Uncharacterized conser 97.6 0.18 3.9E-06 56.4 32.3 251 398-661 32-292 (381)
367 COG3490 Uncharacterized protei 97.5 0.038 8.3E-07 55.2 22.0 232 807-1060 72-347 (366)
368 COG3490 Uncharacterized protei 97.5 0.071 1.5E-06 53.4 23.2 256 580-914 69-346 (366)
369 PF00780 CNH: CNH domain; Int 97.4 0.11 2.4E-06 55.6 27.8 231 406-662 5-265 (275)
370 PF08553 VID27: VID27 cytoplas 97.4 0.0089 1.9E-07 70.7 19.7 149 855-1008 492-647 (794)
371 PF00780 CNH: CNH domain; Int 97.4 0.13 2.8E-06 55.0 27.7 229 345-619 6-266 (275)
372 KOG1008 Uncharacterized conser 97.4 0.00012 2.5E-09 80.2 3.5 203 487-716 58-275 (783)
373 COG3386 Gluconolactonase [Carb 97.4 0.049 1.1E-06 58.0 23.0 223 340-597 30-274 (307)
374 COG3386 Gluconolactonase [Carb 97.3 0.071 1.5E-06 56.8 23.6 199 808-1020 30-254 (307)
375 KOG1008 Uncharacterized conser 97.3 9.4E-05 2E-09 81.0 2.0 203 334-563 56-275 (783)
376 TIGR03074 PQQ_membr_DH membran 97.3 0.77 1.7E-05 55.6 40.4 205 457-661 196-486 (764)
377 PF03178 CPSF_A: CPSF A subuni 97.1 0.14 3E-06 56.2 24.5 217 357-604 2-261 (321)
378 PRK10115 protease 2; Provision 97.1 0.63 1.4E-05 56.4 31.9 245 397-654 127-396 (686)
379 PF03178 CPSF_A: CPSF A subuni 97.1 0.028 6E-07 61.7 18.9 214 781-1005 5-262 (321)
380 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.16 3.4E-06 56.2 24.1 83 801-883 306-407 (415)
381 PF10647 Gmad1: Lipoprotein Lp 97.1 0.19 4.1E-06 52.5 23.9 147 845-1001 25-188 (253)
382 KOG2817 Predicted E3 ubiquitin 97.1 0.0031 6.8E-08 66.0 10.1 104 8-113 119-235 (394)
383 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.13 2.9E-06 56.7 23.0 84 530-619 308-409 (415)
384 PF14870 PSII_BNR: Photosynthe 97.0 0.61 1.3E-05 49.4 26.7 158 840-1005 141-301 (302)
385 KOG4640 Anaphase-promoting com 97.0 0.0027 5.8E-08 70.2 9.3 93 336-451 22-115 (665)
386 smart00320 WD40 WD40 repeats. 96.9 0.0022 4.8E-08 43.9 5.3 39 876-914 2-40 (40)
387 PRK10115 protease 2; Provision 96.9 1.9 4E-05 52.4 33.7 244 336-611 128-397 (686)
388 KOG2395 Protein involved in va 96.8 0.047 1E-06 59.4 16.2 146 858-1008 348-500 (644)
389 PHA02713 hypothetical protein; 96.8 0.074 1.6E-06 62.7 19.7 199 855-1077 303-547 (557)
390 KOG4640 Anaphase-promoting com 96.8 0.0056 1.2E-07 67.7 9.5 77 844-922 21-98 (665)
391 PF10647 Gmad1: Lipoprotein Lp 96.8 0.23 5E-06 51.8 20.9 147 803-954 24-183 (253)
392 PF08553 VID27: VID27 cytoplas 96.8 0.036 7.9E-07 65.7 16.4 145 454-607 493-646 (794)
393 PF15390 DUF4613: Domain of un 96.7 0.04 8.7E-07 61.0 15.2 161 844-1012 20-190 (671)
394 KOG2395 Protein involved in va 96.7 0.037 8E-07 60.2 14.5 144 407-562 344-499 (644)
395 smart00320 WD40 WD40 repeats. 96.7 0.0036 7.9E-08 42.7 4.8 37 326-363 4-40 (40)
396 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.094 2E-06 45.2 13.3 101 889-1004 2-110 (111)
397 KOG4441 Proteins containing BT 96.5 0.22 4.8E-06 58.5 20.9 235 407-655 284-549 (571)
398 PF07995 GSDH: Glucose / Sorbo 96.5 1.1 2.3E-05 49.1 25.1 113 336-465 3-135 (331)
399 PF14727 PHTB1_N: PTHB1 N-term 96.5 1 2.2E-05 50.1 24.6 284 590-917 37-361 (418)
400 PHA02713 hypothetical protein; 96.5 0.13 2.9E-06 60.6 18.9 202 452-664 303-545 (557)
401 PF07995 GSDH: Glucose / Sorbo 96.4 1.4 3E-05 48.2 25.2 239 804-1056 3-330 (331)
402 KOG2079 Vacuolar assembly/sort 96.3 0.05 1.1E-06 64.4 13.1 104 407-516 98-202 (1206)
403 PF05096 Glu_cyclase_2: Glutam 96.3 1.7 3.6E-05 44.6 23.3 185 804-997 46-249 (264)
404 PF14727 PHTB1_N: PTHB1 N-term 96.2 2.9 6.2E-05 46.6 32.1 277 745-1062 36-361 (418)
405 KOG3630 Nuclear pore complex, 96.1 0.12 2.5E-06 61.7 15.1 249 802-1088 100-364 (1405)
406 PF05694 SBP56: 56kDa selenium 96.1 0.73 1.6E-05 50.2 20.0 189 808-997 135-392 (461)
407 PRK13684 Ycf48-like protein; P 96.0 3.2 7E-05 45.5 30.2 157 886-1061 172-331 (334)
408 COG3204 Uncharacterized protei 96.0 2.2 4.7E-05 43.8 21.2 204 732-961 83-308 (316)
409 PF14870 PSII_BNR: Photosynthe 95.9 3.1 6.6E-05 44.3 30.3 230 804-1058 63-301 (302)
410 PF14783 BBS2_Mid: Ciliary BBS 95.8 0.27 5.9E-06 42.4 12.4 102 337-468 2-109 (111)
411 KOG4499 Ca2+-binding protein R 95.7 1.8 4E-05 42.4 18.6 137 441-589 108-264 (310)
412 KOG4499 Ca2+-binding protein R 95.6 2.5 5.4E-05 41.5 19.2 47 807-853 216-263 (310)
413 COG3204 Uncharacterized protei 95.6 3.2 6.9E-05 42.6 23.6 171 839-1010 81-265 (316)
414 KOG2444 WD40 repeat protein [G 95.6 0.032 7E-07 54.2 6.7 102 816-917 72-178 (238)
415 PF05694 SBP56: 56kDa selenium 95.6 1.9 4.2E-05 47.1 20.4 253 498-754 86-393 (461)
416 PF12894 Apc4_WD40: Anaphase-p 95.5 0.064 1.4E-06 38.4 6.2 31 396-426 11-41 (47)
417 KOG4441 Proteins containing BT 95.5 1.2 2.5E-05 52.6 20.3 234 812-1072 283-555 (571)
418 PF12894 Apc4_WD40: Anaphase-p 95.3 0.046 1E-06 39.1 5.0 33 335-369 12-44 (47)
419 TIGR03074 PQQ_membr_DH membran 95.2 5.1 0.00011 48.8 24.9 204 813-1017 194-486 (764)
420 KOG1898 Splicing factor 3b, su 95.2 10 0.00022 45.9 40.0 122 942-1075 939-1062(1205)
421 PF05096 Glu_cyclase_2: Glutam 95.0 4.9 0.00011 41.3 23.2 191 735-953 45-247 (264)
422 KOG1898 Splicing factor 3b, su 95.0 12 0.00025 45.4 31.8 106 808-917 939-1049(1205)
423 KOG2079 Vacuolar assembly/sort 94.9 0.082 1.8E-06 62.7 8.5 102 500-607 100-202 (1206)
424 TIGR02604 Piru_Ver_Nterm putat 94.9 6.3 0.00014 44.0 23.4 139 803-953 14-200 (367)
425 PF10168 Nup88: Nuclear pore c 94.5 13 0.00027 45.1 25.6 94 801-917 83-180 (717)
426 PF12234 Rav1p_C: RAVE protein 94.5 0.87 1.9E-05 53.0 15.4 113 443-563 31-156 (631)
427 KOG1916 Nuclear protein, conta 94.4 0.067 1.5E-06 61.8 6.1 131 329-485 127-282 (1283)
428 PF10168 Nup88: Nuclear pore c 94.3 0.91 2E-05 54.5 15.5 93 978-1073 84-191 (717)
429 PHA03098 kelch-like protein; P 94.1 2 4.3E-05 51.1 18.1 153 498-655 342-514 (534)
430 PF12234 Rav1p_C: RAVE protein 94.0 1.4 2.9E-05 51.5 15.4 122 839-964 25-155 (631)
431 PF14761 HPS3_N: Hermansky-Pud 94.0 2.2 4.8E-05 41.9 14.6 150 899-1060 29-213 (215)
432 COG4257 Vgb Streptogramin lyas 93.9 6.2 0.00013 40.0 17.5 193 845-1064 63-265 (353)
433 KOG2444 WD40 repeat protein [G 93.9 0.19 4.2E-06 49.0 7.2 106 407-518 69-178 (238)
434 KOG4460 Nuclear pore complex, 93.4 1.2 2.6E-05 48.9 12.6 111 978-1089 103-226 (741)
435 PHA03098 kelch-like protein; P 93.3 2.6 5.6E-05 50.1 17.2 196 406-613 293-516 (534)
436 PF15390 DUF4613: Domain of un 93.2 19 0.00041 41.0 26.2 59 940-998 342-404 (671)
437 KOG2377 Uncharacterized conser 92.9 3.4 7.4E-05 44.7 14.9 145 846-997 25-172 (657)
438 KOG2280 Vacuolar assembly/sort 92.9 7.2 0.00016 45.4 18.3 185 824-1020 65-258 (829)
439 PRK13684 Ycf48-like protein; P 92.9 17 0.00037 39.8 31.6 154 802-964 172-330 (334)
440 PF03022 MRJP: Major royal jel 92.8 11 0.00025 40.0 19.2 170 824-997 35-254 (287)
441 TIGR03118 PEPCTERM_chp_1 conse 92.6 15 0.00032 38.3 24.0 214 443-662 24-289 (336)
442 PF14761 HPS3_N: Hermansky-Pud 92.4 8.4 0.00018 38.0 15.8 112 804-918 19-165 (215)
443 TIGR02604 Piru_Ver_Nterm putat 92.3 4.3 9.3E-05 45.3 16.2 103 887-997 14-142 (367)
444 COG1520 FOG: WD40-like repeat 92.3 23 0.00049 39.7 22.5 201 810-1018 65-278 (370)
445 PHA02790 Kelch-like protein; P 92.2 5.9 0.00013 46.1 17.7 184 813-1012 271-474 (480)
446 TIGR03118 PEPCTERM_chp_1 conse 91.9 18 0.00039 37.7 23.6 251 625-896 25-307 (336)
447 PF08728 CRT10: CRT10; InterP 91.5 5.7 0.00012 47.0 16.0 176 814-1008 49-246 (717)
448 KOG1916 Nuclear protein, conta 91.4 0.29 6.2E-06 57.0 5.5 235 823-1074 153-433 (1283)
449 PLN00033 photosystem II stabil 91.1 30 0.00064 38.8 28.2 150 846-1005 241-396 (398)
450 TIGR03606 non_repeat_PQQ dehyd 91.1 32 0.00068 39.1 28.1 67 329-408 24-90 (454)
451 COG3823 Glutamine cyclotransfe 91.0 10 0.00022 36.8 14.2 100 813-917 55-159 (262)
452 PHA02790 Kelch-like protein; P 91.0 10 0.00022 44.2 17.9 149 498-655 318-473 (480)
453 PF10214 Rrn6: RNA polymerase 91.0 50 0.0011 41.0 27.8 174 801-1010 78-278 (765)
454 KOG2377 Uncharacterized conser 90.9 1.4 3E-05 47.5 9.4 122 334-475 66-187 (657)
455 KOG2280 Vacuolar assembly/sort 90.8 18 0.0004 42.3 18.6 164 398-572 85-255 (829)
456 KOG1900 Nuclear pore complex, 90.8 14 0.0003 46.1 18.7 154 863-1016 96-281 (1311)
457 PF11725 AvrE: Pathogenicity f 90.7 41 0.0009 43.5 22.8 150 332-518 360-517 (1774)
458 PF03022 MRJP: Major royal jel 90.3 27 0.00058 37.3 18.8 167 466-640 35-253 (287)
459 KOG3630 Nuclear pore complex, 90.3 2.6 5.6E-05 51.0 11.8 147 443-595 102-260 (1405)
460 TIGR03548 mutarot_permut cycli 90.3 31 0.00068 37.7 21.3 71 498-568 123-199 (323)
461 COG1520 FOG: WD40-like repeat 90.1 36 0.00079 38.0 23.3 198 412-619 72-279 (370)
462 PLN00033 photosystem II stabil 89.9 38 0.00081 38.0 32.7 150 889-1058 241-396 (398)
463 PF10313 DUF2415: Uncharacteri 89.8 0.89 1.9E-05 31.5 4.6 33 335-367 1-35 (43)
464 PF10313 DUF2415: Uncharacteri 89.6 1.2 2.7E-05 30.9 5.2 32 397-428 1-35 (43)
465 PRK14131 N-acetylneuraminic ac 89.6 36 0.00079 38.1 20.4 39 602-642 314-352 (376)
466 COG3292 Predicted periplasmic 89.5 43 0.00094 38.0 23.9 72 395-474 163-234 (671)
467 COG3823 Glutamine cyclotransfe 89.3 23 0.00049 34.6 16.3 175 457-640 58-246 (262)
468 COG3292 Predicted periplasmic 89.1 46 0.00099 37.9 23.1 272 336-648 166-443 (671)
469 COG5167 VID27 Protein involved 88.8 16 0.00034 40.5 15.3 151 446-608 471-632 (776)
470 PF14781 BBS2_N: Ciliary BBSom 88.7 18 0.00039 32.7 13.3 124 339-481 3-133 (136)
471 PF13449 Phytase-like: Esteras 88.6 36 0.00078 37.2 18.9 151 801-953 18-231 (326)
472 KOG4659 Uncharacterized conser 88.6 77 0.0017 39.8 33.7 25 733-757 660-684 (1899)
473 PF13449 Phytase-like: Esteras 88.3 44 0.00094 36.6 23.2 164 843-1008 19-249 (326)
474 PF10433 MMS1_N: Mono-function 87.6 65 0.0014 37.9 40.7 80 814-896 418-503 (504)
475 KOG1900 Nuclear pore complex, 87.6 6.6 0.00014 48.8 13.0 172 318-518 63-273 (1311)
476 PF10433 MMS1_N: Mono-function 87.6 65 0.0014 37.8 36.7 105 496-606 219-340 (504)
477 PF05935 Arylsulfotrans: Aryls 87.5 62 0.0013 37.5 25.0 193 456-655 116-370 (477)
478 PF07676 PD40: WD40-like Beta 87.5 1.9 4E-05 29.5 5.2 31 332-362 6-38 (39)
479 PF11725 AvrE: Pathogenicity f 87.2 49 0.0011 42.9 20.1 134 862-1004 619-768 (1774)
480 COG5167 VID27 Protein involved 87.1 16 0.00035 40.4 14.1 142 812-965 477-632 (776)
481 KOG1983 Tomosyn and related SN 87.0 9.3 0.0002 48.2 14.5 69 938-1012 200-268 (993)
482 TIGR03547 muta_rot_YjhT mutatr 86.9 55 0.0012 36.2 19.9 54 957-1010 168-227 (346)
483 PF05935 Arylsulfotrans: Aryls 86.4 37 0.00081 39.4 18.2 149 864-1022 126-315 (477)
484 PF12657 TFIIIC_delta: Transcr 86.4 3.4 7.3E-05 40.2 8.3 32 397-428 86-123 (173)
485 KOG2247 WD40 repeat-containing 86.3 0.14 3.1E-06 55.3 -1.3 243 739-1017 39-289 (615)
486 PF07569 Hira: TUP1-like enhan 86.3 4.9 0.00011 40.7 9.7 72 942-1014 16-101 (219)
487 PF07569 Hira: TUP1-like enhan 86.2 2.8 6.1E-05 42.4 7.9 74 894-967 18-97 (219)
488 PF07250 Glyoxal_oxid_N: Glyox 86.0 15 0.00033 37.6 12.9 148 512-662 49-207 (243)
489 PRK13614 lipoprotein LpqB; Pro 85.5 47 0.001 39.0 18.2 158 845-1010 344-520 (573)
490 COG5276 Uncharacterized conser 85.4 49 0.0011 34.3 26.0 73 579-655 87-159 (370)
491 TIGR03548 mutarot_permut cycli 85.2 63 0.0014 35.3 20.9 111 897-1012 72-198 (323)
492 COG4590 ABC-type uncharacteriz 85.0 3.3 7.1E-05 44.7 7.8 159 801-969 219-390 (733)
493 PRK13613 lipoprotein LpqB; Pro 84.7 93 0.002 37.0 20.4 188 804-1002 364-576 (599)
494 PF02333 Phytase: Phytase; In 84.2 71 0.0015 35.2 23.9 188 457-654 70-292 (381)
495 TIGR03606 non_repeat_PQQ dehyd 84.0 26 0.00055 39.8 14.7 114 885-999 28-166 (454)
496 COG5290 IkappaB kinase complex 83.5 72 0.0016 37.8 17.6 57 804-860 297-353 (1243)
497 PF12657 TFIIIC_delta: Transcr 82.9 7.3 0.00016 37.9 9.0 31 887-917 86-122 (173)
498 COG4590 ABC-type uncharacteriz 82.8 38 0.00083 37.0 14.4 162 733-918 219-388 (733)
499 smart00036 CNH Domain found in 82.5 76 0.0016 34.2 30.1 210 395-618 41-280 (302)
500 PRK13615 lipoprotein LpqB; Pro 81.9 1.1E+02 0.0025 35.8 23.1 152 846-1009 336-503 (557)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-73 Score=560.61 Aligned_cols=493 Identities=21% Similarity=0.309 Sum_probs=416.9
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhh
Q 001358 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD---MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1092)
Q Consensus 5 ~~~~~~li~q~L~~~G~~~s~~~L~~Esg~~~~---~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 81 (1092)
+-|+|||+.|+|+.+||..|+.+||.|||+.++ ++.|.+++++|+|+.++..+..+...+ .+...++.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999885 899999999999999999998874333 4445569999999999
Q ss_pred hhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCcccccc
Q 001358 82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGK 161 (1092)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~ 161 (1092)
||++..|....|+.+||+...++. ++.++|++|+.-+..++.....+... .-.....|.+|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999988886 57888999988777655433333222 112357899999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCCCcCccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCCCCc
Q 001358 162 LKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLT 241 (1092)
Q Consensus 162 ~~~~~~p~~rL~~Ll~qa~~~q~~~~~~~~~~~~~~sL~~dh~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1092)
+|++||++||+||++||+++|.||| ..+..|||.||.|.+ .| +|+++
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------~q------ip~qt--------------- 216 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------LQ------IPSQT--------------- 216 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------cc------CCchh---------------
Confidence 9999999999999999999999999 455589999999988 34 34433
Q ss_pred CcccccccccCCCCCcccccccCCCCCCcccCCCccccccccCCcceecCcccCCcCCCCCCCchhhhcccccCCccccC
Q 001358 242 DSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 321 (1092)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~~~~~~~~~~~~~~~~~~ 321 (1092)
T Consensus 217 -------------------------------------------------------------------------------- 216 (519)
T KOG0293|consen 217 -------------------------------------------------------------------------------- 216 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEE
Q 001358 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1092)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~ 401 (1092)
.++|..|+++||.+.||++|+ +||+++.|.+..||++.....+.- ...+.+|..+|..
T Consensus 217 -----~qil~~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~y 274 (519)
T KOG0293|consen 217 -----WQILQDHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVSY 274 (519)
T ss_pred -----hhhHhhCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcceee----------------eeeeecccCceEE
Confidence 366889999999999999999 699999999999999987655321 1238899999999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001358 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1092)
Q Consensus 402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~ 481 (1092)
+.||||.+||++|+.+..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|+++..||++ |..+...
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecCC-cchhhcc
Confidence 9999999999999999999999999998766332 24668899999999999 79999999999999954 5556556
Q ss_pred ecCC-cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEE
Q 001358 482 EGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 482 ~~~~-~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
++-. ..|.++++ +.||+++++.+.|..|++++..+...+.. .....+|+++++|.||+++++.-. +..+.+|
T Consensus 350 ~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~----~qei~LW 422 (519)
T KOG0293|consen 350 EGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQ----DQEIHLW 422 (519)
T ss_pred cccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcc----cCeeEEe
Confidence 5543 45788887 56889999999999999999887655543 335568999999999999988765 4459999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEE
Q 001358 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAV 639 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~ 639 (1092)
|+.....++.+.||......|.++.-..+..++++||+|+.|+||+..+|+++..+.+|.. .|++++|+| +..++|+
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~AS 500 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFAS 500 (519)
T ss_pred ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhhc
Confidence 9999999999999996666677665566678999999999999999999999999998754 699999999 6678999
Q ss_pred EeCCCeEEEEECCC
Q 001358 640 IANENRIKILETPE 653 (1092)
Q Consensus 640 ~~~dg~i~iw~~~~ 653 (1092)
+++||+|+||-...
T Consensus 501 asDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 501 ASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCeEEEecCCc
Confidence 99999999997653
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.5e-62 Score=470.93 Aligned_cols=492 Identities=18% Similarity=0.287 Sum_probs=405.7
Q ss_pred hhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHh
Q 001358 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFYFD----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ 79 (1092)
Q Consensus 4 ~~~~~~~li~q~L~~~G~~~s~~~L~~Esg~~~~----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q 79 (1092)
-..||||||.|||+|+.+++++++||+|++++|| ++.|-+.|.+|+||.+++.+++| +++.+.+..||||
T Consensus 6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEq 79 (508)
T KOG0275|consen 6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQ 79 (508)
T ss_pred ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHH
Confidence 3569999999999999999999999999999998 89999999999999999999998 6666678999999
Q ss_pred hhhhhccCCCHHHHHHHHHhh--ccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCcc
Q 001358 80 NFFEALDGHDIAKALNILKKD--LKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPI 157 (1092)
Q Consensus 80 ~~~Ell~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~ 157 (1092)
..|||+|.++...|..+||+. ..-|++.+|++|-+|..||..+.++..+++. +..++.|+ ..|.+.++.++-
T Consensus 80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~---dssKEkrR---a~IAQ~ls~EV~ 153 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYG---DSSKEKRR---AVIAQALSGEVH 153 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcC---cchHHHHH---HHHHHHhcCceE
Confidence 999999999999999999983 3335677899999999999999998887733 24567776 444555555443
Q ss_pred cccccCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCCCcCccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCC
Q 001358 158 LQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSS 237 (1092)
Q Consensus 158 ~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~~~~~~~~~~~~sL~~dh~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1092)
.+||+||+.||+||++||..+.+.|..+ ...||. . ..
T Consensus 154 --------VVppSRLlaLlGQaLKWQqHQGLLPPGt--~iDLFR------------------------G---------kA 190 (508)
T KOG0275|consen 154 --------VVPPSRLLALLGQALKWQQHQGLLPPGT--TIDLFR------------------------G---------KA 190 (508)
T ss_pred --------EcChHHHHHHHHHHhhhHhhcCCCCCCc--eeeecc------------------------c---------hh
Confidence 2899999999999999999987766421 012222 1 00
Q ss_pred CCCcCcccccccccCCCCCcccccccCCCCCCcccCCCccccccccCCcceecCcccCCcCCCCCCCchhhhcccccCCc
Q 001358 238 SMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGET 317 (1092)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~~~~~~~~~~~~~~ 317 (1092)
.+| ...|..||.+..
T Consensus 191 -----------------------A~K-------------------~~~Ee~~Pt~l~----------------------- 205 (508)
T KOG0275|consen 191 -----------------------AMK-------------------DQEEERYPTQLA----------------------- 205 (508)
T ss_pred -----------------------hhh-------------------hhHhhhchHHhh-----------------------
Confidence 000 001223444432
Q ss_pred cccCCCcceeEec-ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCC
Q 001358 318 SFSDFPKTVAQTL-IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1092)
Q Consensus 318 ~~~~~p~~~~~~l-~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~ 396 (1092)
+.+ -|.+..+.|..|||||+ +|++|+.||.|.+||..+|+..+...++.-| -+--+.
T Consensus 206 ----------r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-----------~fMMmd 263 (508)
T KOG0275|consen 206 ----------RSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-----------NFMMMD 263 (508)
T ss_pred ----------hheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhc-----------ceeecc
Confidence 222 24456889999999999 6999999999999999999988765554322 134478
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001358 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
.+|.|+.||.|...||+|+.||.|++|.+++|.+++... ++|+..|+|+.||.|+. .+++++.|.+++|.-+++|+
T Consensus 264 ~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK 339 (508)
T KOG0275|consen 264 DAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGK 339 (508)
T ss_pred cceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccch
Confidence 999999999999999999999999999999999988532 38999999999999999 59999999999999999999
Q ss_pred eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CceEEEEEecCC-CEEEEEecCCCC
Q 001358 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSANG-RRLFSCGTSKEG 553 (1092)
Q Consensus 477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~~~~s~dg-~~l~~~~~~~~~ 553 (1092)
+++.|+||+..|+...| .+||..+++++.||+|++|+..+.++..++...+ .+|.++..-|.. ..+++|..
T Consensus 340 ~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr---- 413 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR---- 413 (508)
T ss_pred hHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC----
Confidence 99999999999999998 5688999999999999999999999888776544 467787777754 56777754
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001358 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
.+++++.++ .|+.++.+.......+...+++.+|.|.++++.++|+.++.|...+|.+..++..|.. .+..++-+|.
T Consensus 414 sntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHPH 490 (508)
T KOG0275|consen 414 SNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHPH 490 (508)
T ss_pred CCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCcc
Confidence 566898886 4778888876655567788889999999999999999999999999999999988754 5788999999
Q ss_pred CCEEEEEeCCCeEEEEE
Q 001358 634 GTLLAVIANENRIKILE 650 (1092)
Q Consensus 634 ~~~l~~~~~dg~i~iw~ 650 (1092)
.+.+|+-+.||.+++|.
T Consensus 491 qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 491 QNLLASYSEDGLLKLWK 507 (508)
T ss_pred cchhhhhcccchhhhcC
Confidence 99999999999999995
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-59 Score=501.01 Aligned_cols=576 Identities=18% Similarity=0.248 Sum_probs=495.1
Q ss_pred EeecCCCceEEEEEcCcCcEEEEecCCCCce-eeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCC
Q 001358 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418 (1092)
Q Consensus 340 v~~spdg~~llasg~~d~~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~ 418 (1092)
++||++|+ +|++... ..|.+-|+.++... ... -......+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s~------------------~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPSG------------------SNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceecccC------------------CccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 6777654 45999999999873 211 223567899999999999999999999
Q ss_pred EEEEEEccCCCCccceEEecc-cccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccC
Q 001358 419 IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1092)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~l~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 497 (1092)
.+++|++.+|+.++ .++. |++||.-++|+|.+. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998777 5556 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc
Q 001358 498 NIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576 (1092)
Q Consensus 498 ~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 576 (1092)
+...|++|..|+++++||+..... ...+..|...|++++|++|+..+++++. +..+.+||..+.+..++++..+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888999999999999999996555 6788889999999999999999999987 6679999998887777777654
Q ss_pred cCCceEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358 577 QHNSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 577 ~~~~v~~~~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
.+.++.+.++ +.++++++.+|.+++||.+++++........ ...+..+...+....++..+.|..+.++|.
T Consensus 235 ---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 235 ---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred ---heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEc
Confidence 6777888777 7799999999999999999998877665443 233666666666667777888899999999
Q ss_pred CCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCc
Q 001358 652 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 731 (1092)
Q Consensus 652 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 731 (1092)
++.+....+-|..+.|..+.|- .|+.+.++.++..+.+|+++.. ...|..+ .
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~l---------------------G~e~~~laVATNs~~lr~y~~~---~~~c~ii----~ 362 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFL---------------------GPEESHLAVATNSPELRLYTLP---TSYCQII----P 362 (775)
T ss_pred cccEEehhhcCCchhheeeeec---------------------CCccceEEEEeCCCceEEEecC---CCceEEE----e
Confidence 9999999999999999888886 5788999999999999999655 3334422 4
Q ss_pred cccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001358 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 811 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s 811 (1092)
+|...|.++....+|-.+++++.|..+++|.++.+.. .....-...+|.+.|.+++++
T Consensus 363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~----------------------~~~~~a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS----------------------KSLCVAQANGHTNSVGAVAGS 420 (775)
T ss_pred CchhheeeeeecccCcEEEEecCCceEEEEEecCCcc----------------------hhhhhhhhcccccccceeeec
Confidence 6999999999888899999999999999999843211 000001122599999999998
Q ss_pred cCC-CEEEEEe-CCeEEEEEcCCcee---------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeE
Q 001358 812 KND-AYLFSAS-GGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 880 (1092)
Q Consensus 812 ~dg-~~l~~~s-dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 880 (1092)
..+ .++++++ |+++++|++...+. ..+...|...|++++++| +.+++|||+.|++.+||+++.+....
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEE
Confidence 766 5777777 89999999976221 112356999999999999 88999999999999999999999999
Q ss_pred eeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcE
Q 001358 881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL 959 (1092)
Q Consensus 881 ~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v 959 (1092)
++.||...|+++.|+|..+.+||+|.|++|+||.+++ ..++++++||.. .|..+.|-.+|+.|++ +.||-+
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGli 571 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLI 571 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcE
Confidence 9999999999999999999999999999999999999 448999999987 8999999999999998 799999
Q ss_pred EEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001358 960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~ 1009 (1092)
++|++.+++|... +.+|..+|+++.-++++.+++||+.||.|.+|.=.+
T Consensus 572 KlWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 572 KLWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred EEEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999999999998 779999999999999999999999999999996444
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-56 Score=475.95 Aligned_cols=589 Identities=13% Similarity=0.179 Sum_probs=479.7
Q ss_pred ccc-CCcCCCCCCCchhhhcccccCCccccCCCcce-e-EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCC
Q 001358 292 VSL-KNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV-A-QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ 368 (1092)
Q Consensus 292 ~~~-~~~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~-~-~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~ 368 (1092)
++| |.-..|+|++..+...+.... ..++..+... + ..-.+-.+.+++++.+||++ .|.+++...-+++|++.+|+
T Consensus 18 piYtGG~~~~s~nG~~L~t~~~d~V-i~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk 95 (775)
T KOG0319|consen 18 PIYTGGPVAWSSNGQHLYTACGDRV-IIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGK 95 (775)
T ss_pred ceecCCceeECCCCCEEEEecCceE-EEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccch
Confidence 344 445788888888776665310 0111112222 1 12234567899999999998 68899999999999999998
Q ss_pred ceeeeeeeeeecccccceeEEeeecC-CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEE
Q 001358 369 KLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447 (1092)
Q Consensus 369 ~~~~~~~~~~d~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~ 447 (1092)
.++. ++. |+.+|.-++|+|.|.+||+|+.|+.++|||+..+.+.. .|+||.+.|.++
T Consensus 96 ~irs-------------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl 153 (775)
T KOG0319|consen 96 LIRS-------------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSL 153 (775)
T ss_pred HhHh-------------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEE
Confidence 8765 444 99999999999999999999999999999999986555 899999999999
Q ss_pred EeeCCCCcEEEEEEeCCCcEEEEECCCCce-eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001358 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1092)
Q Consensus 448 ~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 526 (1092)
.|.|+-.+.+|++|+.|+++++||+.+... +..+..|...|+++++.+ |+..+++++.|..+.+||+...+...++.
T Consensus 154 ~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp 231 (775)
T KOG0319|consen 154 LFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLP 231 (775)
T ss_pred EeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheec
Confidence 999998876899999999999999996654 888999999999999954 67899999999999999996555444443
Q ss_pred CCCCceEEEEEecC-----CCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCe
Q 001358 527 APGLGCTRMAYSAN-----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1092)
Q Consensus 527 ~~~~~i~~~~~s~d-----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1092)
.. ..+.++.+-++ |.+++++|. ++.+++||..+++++....... ...+..+...+....++..+.|..
T Consensus 232 ~y-e~~E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQn 304 (775)
T KOG0319|consen 232 LY-ESLESVVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQN 304 (775)
T ss_pred hh-hheeeEEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCC--chhhhcceeccccCceEEEEccce
Confidence 22 35666777676 678888875 6779999999998876665443 233677777777778888889999
Q ss_pred EEEEECCCCceEEEEeCCCCCCCCceEEEc-cCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccccc
Q 001358 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1092)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1092)
+.++|.++.+....+-+.. ..|..|+|- |+.++++++++.+.+++|+..+..+. .+.+|.+.|.++...
T Consensus 305 l~l~d~~~l~i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~------- 374 (775)
T KOG0319|consen 305 LFLYDEDELTIVKQIVGYN--DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVW------- 374 (775)
T ss_pred EEEEEccccEEehhhcCCc--hhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeec-------
Confidence 9999999999888876543 468888875 68899999999999999998887665 889999999888743
Q ss_pred ccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCc-EEEEeecCCeeE
Q 001358 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHL 759 (1092)
Q Consensus 681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~ 759 (1092)
.+|-++++++.|.++++|.++.+.. .........+|.+.|.+++++..+. .+++++.|++++
T Consensus 375 ---------------~~g~llat~sKD~svilWr~~~~~~--~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK 437 (775)
T KOG0319|consen 375 ---------------SSGDLLATGSKDKSVILWRLNNNCS--KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK 437 (775)
T ss_pred ---------------ccCcEEEEecCCceEEEEEecCCcc--hhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence 4567899999999999999842211 1111223367999999999987664 567888899999
Q ss_pred EeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEE
Q 001358 760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT 838 (1092)
Q Consensus 760 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~ 838 (1092)
+|+++..+.... +. ..........|...|.|++++|+.+++|+|+ |.+.+||+++.+....+
T Consensus 438 ~W~l~~s~~~~~--------~~---------~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v 500 (775)
T KOG0319|consen 438 LWDLPKSKETAF--------PI---------VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV 500 (775)
T ss_pred EecCCCcccccc--------cc---------eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE
Confidence 999987321100 01 1111122335999999999999999999999 89999999999999999
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001358 839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 918 (1092)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~ 918 (1092)
+.+|...+.++.|+| ..+.+||+|.|++|+||.+.+..++++|.||+..|..+.|-.+|+.|+|++.||.|++|+++++
T Consensus 501 LsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 501 LSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred eeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 999999999999999 8889999999999999999999999999999999999999999999999999999999999996
Q ss_pred ceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCC
Q 001358 919 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 966 (1092)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~ 966 (1092)
+ +..++..|.. .|.+++.+|++.++++ +.|+.|.+|.-.+
T Consensus 580 e-----C~~tlD~H~D---rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 580 E-----CEMTLDAHND---RVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred h-----hhhhhhhccc---eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 6 7788888876 8999999999999998 6899999996443
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.6e-52 Score=426.31 Aligned_cols=575 Identities=15% Similarity=0.193 Sum_probs=461.9
Q ss_pred eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001358 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d 417 (1092)
.-+.-.|.|+.++.+.+ +.|.+-++++...... +++|...++-..|||.|-|+|+|...
T Consensus 22 ~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~i-------------------YtEH~~~vtVAkySPsG~yiASGD~s 80 (603)
T KOG0318|consen 22 IIIGGDPKGDNILYTNG--KSVIIRNIDNPASVDI-------------------YTEHAHQVTVAKYSPSGFYIASGDVS 80 (603)
T ss_pred eEeccCCCCCeEEEeCC--CEEEEEECCCccceee-------------------eccccceeEEEEeCCCceEEeecCCc
Confidence 34455688887777755 6788888887765433 78899999999999999999999999
Q ss_pred CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEE--eCCCcEEEEECCCCceeEEEecCCcceEEEeecc
Q 001358 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 418 ~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
|+|+|||....+.+- ..+++.-.++|..++|++|+++ ++.. +.++..+++-+++|..+..+.||...|+++.|-|
T Consensus 81 G~vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kp 157 (603)
T KOG0318|consen 81 GKVRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKP 157 (603)
T ss_pred CcEEEEeccCcceee-eeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccC
Confidence 999999998743322 2356678899999999999995 4433 3444455555578889999999999999999977
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001358 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
+.. -++++|+.|++|.+|+=...+-...+..|..-|.++.|+|||.++++++. ++.+++||-.+|+.+..+....
T Consensus 158 sRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~ 232 (603)
T KOG0318|consen 158 SRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSD 232 (603)
T ss_pred CCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCC
Confidence 643 57999999999999987777777778888889999999999999999987 6679999999999999999655
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCC-CceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE-NPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.|.+.|.+++|+||+.++++++.|.+++|||+.+.+++.++........ ...+.|. ...|++.+.+|.|.+++....
T Consensus 233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 5669999999999999999999999999999999999999987654211 2234444 678999999999999999999
Q ss_pred CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCcccc
Q 001358 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 734 (1092)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 734 (1092)
..+..+.+|...|++++.+ +|++++.+++.||.|.-|+...+... .+...+|.
T Consensus 311 ~~~~~i~GHnK~ITaLtv~----------------------~d~~~i~SgsyDG~I~~W~~~~g~~~-----~~~g~~h~ 363 (603)
T KOG0318|consen 311 SVLKVISGHNKSITALTVS----------------------PDGKTIYSGSYDGHINSWDSGSGTSD-----RLAGKGHT 363 (603)
T ss_pred ChhheecccccceeEEEEc----------------------CCCCEEEeeccCceEEEEecCCcccc-----cccccccc
Confidence 9999999999999999996 78899999999999999998754333 23335599
Q ss_pred ccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001358 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1092)
Q Consensus 735 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg 814 (1092)
..|.+++.+..+. +++.+.|.++++.++..+...... . .+ -.....+++..+++
T Consensus 364 nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~------------------~--~~-----lg~QP~~lav~~d~ 417 (603)
T KOG0318|consen 364 NQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE------------------V--VK-----LGSQPKGLAVLSDG 417 (603)
T ss_pred ceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc------------------e--ee-----cCCCceeEEEcCCC
Confidence 9999999988776 788888889988776543221110 0 11 12233488999998
Q ss_pred CEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee--eEeeccccCCeEEE
Q 001358 815 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGHSKRVTGL 892 (1092)
Q Consensus 815 ~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l 892 (1092)
.+++.+.++.|.+..-.++ +..+. ..-...++|++| ++..+|+|+.||.|+||.+..+.. ...+..|.++|+++
T Consensus 418 ~~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v 493 (603)
T KOG0318|consen 418 GTAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV 493 (603)
T ss_pred CEEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE
Confidence 8888888766666542221 11221 334678999999 999999999999999999987653 34566799999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeee
Q 001358 893 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLK 971 (1092)
Q Consensus 893 ~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~ 971 (1092)
++|||+.+||++...+.+.+||+.+.+... ..... |. ..|.+++|||+.+++|+ +-|..|.||++.......
T Consensus 494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~-~~w~F---Ht---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i 566 (603)
T KOG0318|consen 494 AYSPDGAYLAAGDASRKVVLYDVASREVKT-NRWAF---HT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHI 566 (603)
T ss_pred EECCCCcEEEEeccCCcEEEEEcccCceec-ceeee---ee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhhe
Confidence 999999999999999999999999976422 11111 22 37999999999999999 578999999999877666
Q ss_pred eeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358 972 QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 972 ~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
....+|...|+.+.|-. ...|++.+.|..|++|++.
T Consensus 567 ~iknAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 567 IIKNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EeccccccCceeEEEec-CceEEeccCcceeEEeccc
Confidence 66788988899999975 4578999999999999875
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-49 Score=423.84 Aligned_cols=578 Identities=15% Similarity=0.211 Sum_probs=463.4
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
.+.|++||..+++-..+ .|.++|+...+.... .-.+...|.+++.||+|. ++++...+|...+-++.....++.
T Consensus 19 nl~ft~dG~sviSPvGN-rvsv~dLknN~S~Tl---~~e~~~NI~~ialSp~g~--lllavdE~g~~~lvs~~~r~Vlh~ 92 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGN-RVSVFDLKNNKSYTL---PLETRYNITRIALSPDGT--LLLAVDERGRALLVSLLSRSVLHR 92 (893)
T ss_pred cEEECCCCCEEEeccCC-EEEEEEccCCcceeE---EeecCCceEEEEeCCCce--EEEEEcCCCcEEEEecccceeeEE
Confidence 48899999999987555 499999998754432 224777899999999999 888899999999999888888888
Q ss_pred EecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--------eEEecCCCCceEEEEEecCCCEEEEEecCCC
Q 001358 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
+. ...+|.+++|+| ||.+++.+ ..+.+.+|....... ..++.+|-..|.++.|+.|.+++++++.
T Consensus 93 f~-fk~~v~~i~fSP--ng~~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr--- 165 (893)
T KOG0291|consen 93 FN-FKRGVGAIKFSP--NGKFFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR--- 165 (893)
T ss_pred Ee-ecCccceEEECC--CCcEEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---
Confidence 75 677899999955 66666655 456899997654322 3356677789999999999999999986
Q ss_pred CceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC---------------------
Q 001358 553 GESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--------------------- 609 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--------------------- 609 (1092)
|..+++|+++..+- ...+.+|. +.|.++.|..+...+++.+.||.+.+|....
T Consensus 166 -D~s~rl~~v~~~k~~~~~~l~gHk---d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 166 -DLSARLFGVDGNKNLFTYALNGHK---DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred -cceEEEEEeccccccceEeccCCC---cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 66799999876655 56677777 9999999999999999999999999997661
Q ss_pred --Cce-----EE----EEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccc
Q 001358 610 --VQL-----LT----TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 610 --~~~-----~~----~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
++. .. ..-.......+++.+|++..+.|+++-..|.+.+|+++.-..+..+.....+|..++++.
T Consensus 242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~---- 317 (893)
T KOG0291|consen 242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNS---- 317 (893)
T ss_pred ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecc----
Confidence 111 00 111111224688999999999999999999999999999999999998888898888874
Q ss_pred ccccccCCceeecCCCCCCcccceeeccc-cccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCe
Q 001358 679 TGAGIANGSVSVNEDPKEDVKPEISVEAE-NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 757 (1092)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 757 (1092)
.|.+++.|+.. |.+-+|+... ..+.+...+|...+.+++++|||+++++|+.||.
T Consensus 318 ------------------tGDWiA~g~~klgQLlVweWqs------EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK 373 (893)
T KOG0291|consen 318 ------------------TGDWIAFGCSKLGQLLVWEWQS------ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK 373 (893)
T ss_pred ------------------cCCEEEEcCCccceEEEEEeec------cceeeeccccccceeeEEECCCCcEEEeccCCCc
Confidence 35555555443 7888998763 3455666779999999999999999999999999
Q ss_pred eEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee
Q 001358 758 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI 836 (1092)
Q Consensus 758 i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~ 836 (1092)
|++|+ ..+|.|+.+++ .|...|+.+.|+..|+.+++++ ||+|+.||+...+..
T Consensus 374 VKvWn----------------------~~SgfC~vTFt----eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf 427 (893)
T KOG0291|consen 374 VKVWN----------------------TQSGFCFVTFT----EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF 427 (893)
T ss_pred EEEEe----------------------ccCceEEEEec----cCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee
Confidence 88876 45677787766 3999999999999999999998 999999999999999
Q ss_pred EEecCCCC-CeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001358 837 LTIMPPSP-TATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 837 ~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd 914 (1092)
+++..+.. ...|++..| .|.++..|+.|. .|++|++++|+.+..+.||.++|.+++|+|++..|||+|.|++|++||
T Consensus 428 RTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 428 RTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred eeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 99986653 568999999 899999999887 899999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeecc------------------
Q 001358 915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------------------ 975 (1092)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~------------------ 975 (1092)
+-..... ...++.. ..+..++|+|||+.||+ .-||.|.+||+..+..+..+-.
T Consensus 507 if~s~~~-vEtl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 507 IFSSSGT-VETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN 578 (893)
T ss_pred eeccCce-eeeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence 9764211 1122222 24889999999999999 6899999999987655533111
Q ss_pred -CCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccc---------------------------------
Q 001358 976 -ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY--------------------------------- 1021 (1092)
Q Consensus 976 -~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~--------------------------------- 1021 (1092)
......+.+++|+||.+|++||....|++|++.++.++++|.....
T Consensus 579 sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~ 658 (893)
T KOG0291|consen 579 SAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEG 658 (893)
T ss_pred cccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccc
Confidence 1257889999999999999999999999999999999888762111
Q ss_pred -----cCCCC----c----cCcccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001358 1022 -----LRPTT----S----CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1022 -----~~~~~----~----~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
+|... . ...|....+.|+|. ++-+|++++.|. .||.+
T Consensus 659 ~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPt-graFAaatTEGl-~IYsl 708 (893)
T KOG0291|consen 659 RIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPT-GRAFAAATTEGL-LIYSL 708 (893)
T ss_pred cccccCCccccCCccccccCceEEEEEEEECCC-cCeeeeecccce-EEEec
Confidence 11100 0 11466678999994 788999988884 34444
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.3e-50 Score=425.54 Aligned_cols=586 Identities=17% Similarity=0.206 Sum_probs=453.4
Q ss_pred cCCCCCCCchhhhcccccCCccccCCCcceeEecc-cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeee
Q 001358 297 IPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF 375 (1092)
Q Consensus 297 ~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~ 375 (1092)
-+.|+|.+..+...- .+...+.++.+....+|. .+...|++++.||+|. +|++....|...+-++.....++.+++
T Consensus 19 nl~ft~dG~sviSPv--GNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~f 95 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPV--GNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFNF 95 (893)
T ss_pred cEEECCCCCEEEecc--CCEEEEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEee
Confidence 466666643332111 123344555555555554 4556999999999998 666667788999999888877765443
Q ss_pred eeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCC-----ccceEEecccccceeEEEee
Q 001358 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFS 450 (1092)
Q Consensus 376 ~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~l~~h~~~v~~~~~s 450 (1092)
+.+|.|+.|||||+++|+|..+ .+.||....... .....++.+|...|.++.|+
T Consensus 96 --------------------k~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws 154 (893)
T KOG0291|consen 96 --------------------KRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWS 154 (893)
T ss_pred --------------------cCccceEEECCCCcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCccceeEEEec
Confidence 3789999999999999998654 699998764322 23344677899999999999
Q ss_pred CCCCcEEEEEEeCCCcEEEEECCCCce--eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC----------
Q 001358 451 APCKQISVITCGDDKTIKVWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------- 518 (1092)
Q Consensus 451 ~d~~~l~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~---------- 518 (1092)
.|++ ++++|+.|.++++|+++..+- .+.+.+|...|.++-|. .|...+++.+.||.+.+|..+.
T Consensus 155 ~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~k 230 (893)
T KOG0291|consen 155 DDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELDKAEK 230 (893)
T ss_pred cCCc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEec--cCcceEEEEecCceEEEEEecCCCcccccccc
Confidence 9999 899999999999999887665 57788999999988774 4567899999999999997761
Q ss_pred -------------CCc-----------eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001358 519 -------------LGA-----------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 519 -------------~~~-----------~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
.+. ..-+......+++.+|++..+.|+++.. .+...++++....+++.+.-.
T Consensus 231 d~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis 306 (893)
T KOG0291|consen 231 DEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSIS 306 (893)
T ss_pred cccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecc
Confidence 111 0011222357899999999999999876 445889999999999998876
Q ss_pred cccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358 575 QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
. .+|..++|+..|.+++.|+ .-|.+.||+..+..-+...+ +|...+.+++++|||+++|+|++||.|+|||...
T Consensus 307 ~---~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 307 D---QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ--GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred c---ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc--ccccceeeEEECCCCcEEEeccCCCcEEEEeccC
Confidence 6 7999999999999999976 45899999998877665555 4466899999999999999999999999999998
Q ss_pred CCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccc
Q 001358 654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 733 (1092)
Q Consensus 654 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 733 (1092)
+-++.++.. |
T Consensus 382 gfC~vTFte----------------------------------------------------------------------H 391 (893)
T KOG0291|consen 382 GFCFVTFTE----------------------------------------------------------------------H 391 (893)
T ss_pred ceEEEEecc----------------------------------------------------------------------C
Confidence 877665543 6
Q ss_pred cccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC
Q 001358 734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 813 (1092)
Q Consensus 734 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~d 813 (1092)
.+.|+.+.|+..|+.+++.+-||+++.||+... .+..++..+ ......|++..|.
T Consensus 392 ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY----------------------rNfRTft~P---~p~QfscvavD~s 446 (893)
T KOG0291|consen 392 TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY----------------------RNFRTFTSP---EPIQFSCVAVDPS 446 (893)
T ss_pred CCceEEEEEEecCCEEEEeecCCeEEeeeeccc----------------------ceeeeecCC---CceeeeEEEEcCC
Confidence 667777888888888888888888888876542 223333332 3456678999999
Q ss_pred CCEEEEEe-C-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-eeeEeeccccCCeE
Q 001358 814 DAYLFSAS-G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVT 890 (1092)
Q Consensus 814 g~~l~~~s-d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~ 890 (1092)
|.++..|+ | -.|.+|++++|+.+..+.+|.++|.+++|+| ++..||+|+.|++|++||+-.. ..+.++. +...+.
T Consensus 447 GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl 524 (893)
T KOG0291|consen 447 GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVL 524 (893)
T ss_pred CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-ecccee
Confidence 99998887 4 4599999999999999999999999999999 8999999999999999998654 3455665 778899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCceee----eeeee--------cCCCCcCCCCCceEEEEecCCCEEEE-EeCC
Q 001358 891 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQT----CRSLQ--------TPDGVMTLAPSETHIQFHKDQTRFLL-VHET 957 (1092)
Q Consensus 891 ~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~----~~~~~--------~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~ 957 (1092)
.++|+|||+.||+++-||.|.+||.+.+.... .+-+. ....+.......+.+++|+||.+|++ |..+
T Consensus 525 ~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn 604 (893)
T KOG0291|consen 525 AVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESN 604 (893)
T ss_pred EEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcc
Confidence 99999999999999999999999987654321 00000 00001111146899999999999998 6778
Q ss_pred cEEEEEcCCceeeeeeccC-------------------------------------------------------CCcCEE
Q 001358 958 HLAIYEAEELTCLKQWFPI-------------------------------------------------------SSVPIS 982 (1092)
Q Consensus 958 ~v~lwd~~~~~~~~~~~~~-------------------------------------------------------h~~~v~ 982 (1092)
.|+||++.++..++.+... ..-.|.
T Consensus 605 ~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~ 684 (893)
T KOG0291|consen 605 SICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVT 684 (893)
T ss_pred cEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEE
Confidence 9999999887655442111 022578
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceEEeec
Q 001358 983 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 983 ~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
++.|||.|+-++.++..| +.||.+.+.-...-+.
T Consensus 685 sv~fsPtgraFAaatTEG-l~IYsld~~~~FDPf~ 718 (893)
T KOG0291|consen 685 SVQFSPTGRAFAAATTEG-LLIYSLDTTILFDPFD 718 (893)
T ss_pred EEEECCCcCeeeeecccc-eEEEecCCceEEcccc
Confidence 899999999999999887 8899998876654443
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-49 Score=407.16 Aligned_cols=541 Identities=12% Similarity=0.202 Sum_probs=434.9
Q ss_pred eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
...+.+|...++-..|||.|- ++|+|...|.|+|||....+.+...+|++ -.++|..++|++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~v-----------------~aG~I~Di~Wd~ 113 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQV-----------------LAGPIKDISWDF 113 (603)
T ss_pred eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeeee-----------------cccccccceeCC
Confidence 567789999999999999996 79999999999999998876666555442 457999999999
Q ss_pred CCCEEEEEeC--CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001358 407 DGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 407 dg~~las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
|+++|++.+. ++..+++-+++|..+. ++.||...|.+++|-|.... .++||+.|++|.+|+-.--+...+++.|
T Consensus 114 ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~H 189 (603)
T KOG0318|consen 114 DSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREH 189 (603)
T ss_pred CCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccc
Confidence 9999988754 3334444444554445 68899999999999997765 8999999999999986666777788899
Q ss_pred CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEe
Q 001358 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1092)
...|+++.|+| ||.++++++.||++.+||=.+++....+. .|.+.|.+++|+||++.+++++. +.++++||
T Consensus 190 skFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWd 263 (603)
T KOG0318|consen 190 SKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWD 263 (603)
T ss_pred ccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEE
Confidence 99999999954 78999999999999999999999888887 78899999999999999999987 66799999
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001358 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
..+.++++++.....-.+....+.|. +..|++.+.+|+|.+++...+..+..+.+|. ..|++++.+|++++|.+|+
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDGKTIYSGS 339 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCCCEEEeec
Confidence 99999999987654222344445565 5689999999999999999999888888764 4799999999999999999
Q ss_pred CCCeEEEEECCCCCeeeec-ccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccC
Q 001358 642 NENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 720 (1092)
Q Consensus 642 ~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~ 720 (1092)
.||.|.-|+...+..-... ++|...|.+++.+ +...+++.+.|.++++.++.....
T Consensus 340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-----------------------~~~~~~t~g~Dd~l~~~~~~~~~~ 396 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-----------------------ESGELFTIGWDDTLRVISLKDNGY 396 (603)
T ss_pred cCceEEEEecCCccccccccccccceEEEEeec-----------------------CCCcEEEEecCCeEEEEecccCcc
Confidence 9999999999988665544 6788888887775 235678889999999987643322
Q ss_pred ccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCC
Q 001358 721 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 800 (1092)
Q Consensus 721 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 800 (1092)
.......+ .....+++..+++..++.+...+.+.+-+... +... .
T Consensus 397 t~~~~~~l-----g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-------------------------~~~~-----~ 441 (603)
T KOG0318|consen 397 TKSEVVKL-----GSQPKGLAVLSDGGTAVVACISDIVLLQDQTK-------------------------VSSI-----P 441 (603)
T ss_pred cccceeec-----CCCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------------ceee-----c
Confidence 22221111 12233788888887666666555544422211 1111 1
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001358 801 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1092)
-.....+++++|++..+++|+ |+.++||.+..+.. ...+..|.++|++++||| |+.+||+|...+.|.+||+.+.+
T Consensus 442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCc
Confidence 345678999999999999998 79999999987553 335667999999999999 99999999999999999999987
Q ss_pred eeEe-eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeC
Q 001358 878 VISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956 (1092)
Q Consensus 878 ~~~~-l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d 956 (1092)
.... +.-|++.|.+++|||+.+++||||-|-.|.||+++.... .+.....|.. .|..++|-.+...+-+|.|
T Consensus 521 ~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~----~i~iknAH~~---gVn~v~wlde~tvvSsG~D 593 (603)
T KOG0318|consen 521 VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK----HIIIKNAHLG---GVNSVAWLDESTVVSSGQD 593 (603)
T ss_pred eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh----heEecccccc---CceeEEEecCceEEeccCc
Confidence 6433 334999999999999999999999999999999997432 2444445554 5999999999988888999
Q ss_pred CcEEEEEcC
Q 001358 957 THLAIYEAE 965 (1092)
Q Consensus 957 ~~v~lwd~~ 965 (1092)
..|++|++.
T Consensus 594 a~iK~W~v~ 602 (603)
T KOG0318|consen 594 ANIKVWNVT 602 (603)
T ss_pred ceeEEeccc
Confidence 999999874
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-48 Score=415.57 Aligned_cols=575 Identities=16% Similarity=0.188 Sum_probs=446.3
Q ss_pred CceEEee-cCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358 336 SPMSMDF-HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 336 ~V~~v~~-spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
++..+.. +..|+++.+++ -..|.+||+.+|+...... .......|+|++-+||.-+||+|
T Consensus 23 N~~~~~~~~~~Gr~va~~a--~E~vn~WdlRtge~~~~l~-----------------~~~~k~evt~l~~~~d~l~lAVG 83 (888)
T KOG0306|consen 23 NINFVVKRSGKGRAVAVSA--LEQVNIWDLRTGEIEKKLI-----------------LLKKKAEVTCLRSSDDILLLAVG 83 (888)
T ss_pred ceeEEEeecCCCcEEEEec--cccEeEEeeecchhhhhhh-----------------hhcccceEEEeeccCCcceEEEE
Confidence 4444433 34687433323 3689999999996554211 22344689999999999999999
Q ss_pred eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeec
Q 001358 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 494 (1092)
..||.|+||+..++.... ++.||...|+++.|...|. .|+|||.|+.|.+||+-...-+..+.||...|+.+-|.
T Consensus 84 YaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 84 YADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred ecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 999999999999875443 7889999999999999999 89999999999999999988999999999999988875
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC---------
Q 001358 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--------- 565 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--------- 565 (1092)
. +..++++.+.|+.|++||+.+..+..+...|.+.+..+++.+ +.+++++. +..+.+|++...
T Consensus 159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~ 230 (888)
T KOG0306|consen 159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRY 230 (888)
T ss_pred C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeeccccccccccc
Confidence 4 457999999999999999999999999999999999999988 67777765 445999988211
Q ss_pred ---eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE--------------EE-EeC---------
Q 001358 566 ---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--------------TT-IDA--------- 618 (1092)
Q Consensus 566 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~--------------~~-~~~--------- 618 (1092)
+...++... ..+....+...+++.++++-+.|..+.++.+.+.+.+ .. -..
T Consensus 231 ~s~~~~G~~~rq--sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~ 308 (888)
T KOG0306|consen 231 ISTKLRGTFIRQ--SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS 308 (888)
T ss_pred ceeeccceeeec--cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence 011122221 1345556677788888999999999999987653211 00 000
Q ss_pred --------CCCCCCCceEEEccCCC---EEEEEeCCCeEEEEECCCCCee---------eecccccccceeeeecCCccc
Q 001358 619 --------GGGLPENPRICFNKNGT---LLAVIANENRIKILETPESNSV---------DAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 619 --------~~~~~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
-.....+.++.|-|.++ .|+. -.++++..|.++..... ..+.+|...|.+++++.
T Consensus 309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~---- 383 (888)
T KOG0306|consen 309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS---- 383 (888)
T ss_pred HHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec----
Confidence 00112356677776443 2333 56778888887753222 34568888898888873
Q ss_pred ccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCee
Q 001358 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 758 (1092)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 758 (1092)
|...++++ ..+.+++|+..+.. |.... ..+.+.+..|-|.+++++.|..+|.+
T Consensus 384 ------------------d~~~~~Sg-a~~SikiWn~~t~k---ciRTi-----~~~y~l~~~Fvpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 384 ------------------DSILLASG-AGESIKIWNRDTLK---CIRTI-----TCGYILASKFVPGDRYIVLGTKNGEL 436 (888)
T ss_pred ------------------Cceeeeec-CCCcEEEEEccCcc---eeEEe-----ccccEEEEEecCCCceEEEeccCCce
Confidence 33334444 44789999977432 22211 33478889999999999999999999
Q ss_pred EEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC-----
Q 001358 759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT----- 832 (1092)
Q Consensus 759 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~----- 832 (1092)
.+|++..... +-+. ..|.+.+.+++.+||++.+++++ |.+|++||..-
T Consensus 437 ~vfdlaS~~l----------------------~Eti----~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 437 QVFDLASASL----------------------VETI----RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred EEEEeehhhh----------------------hhhh----hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence 9999765421 1111 14999999999999999999998 89999999752
Q ss_pred ceeeEEe-------cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEe
Q 001358 833 FKTILTI-------MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 905 (1092)
Q Consensus 833 ~~~~~~~-------~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 905 (1092)
+...+.+ -.-...|.|+.+|| |+++||++--|.+|+||-+++-+..-.+.||.-||.||..|||+++++|||
T Consensus 491 gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS 569 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS 569 (888)
T ss_pred cccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc
Confidence 2111111 12456899999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEE
Q 001358 906 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQA 984 (1092)
Q Consensus 906 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l 984 (1092)
.|+.|+||-++-|. |.+.+-+|.. .|.++.|-|+..++.+ |.|+.|+-||....+++.. +.+|...|+++
T Consensus 570 ADKnVKiWGLdFGD-----CHKS~fAHdD---Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~-L~~H~~ev~cL 640 (888)
T KOG0306|consen 570 ADKNVKIWGLDFGD-----CHKSFFAHDD---SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK-LDGHHSEVWCL 640 (888)
T ss_pred CCCceEEeccccch-----hhhhhhcccC---ceeEEEEcccceeEEEecCcceEEeechhhhhhhee-eccchheeeee
Confidence 99999999998865 5556666655 7999999998888777 7999999999999999987 77899999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCce
Q 001358 985 TFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 985 ~fs~dg~~l~t~s~Dg~i~vwd~~~~~~ 1012 (1092)
+.+|+|.+++++|.|.+|++|.-....+
T Consensus 641 av~~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 641 AVSPNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred EEcCCCCeEEeccCCceeEeeeccCcce
Confidence 9999999999999999999999877444
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-48 Score=415.14 Aligned_cols=503 Identities=15% Similarity=0.239 Sum_probs=397.2
Q ss_pred CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE
Q 001358 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
+.+|+|+.-+||.- +||+|..||.|+||+..++..+.+ +.||...|+++.|...|..||+
T Consensus 65 k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rlaS 124 (888)
T KOG0306|consen 65 KAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLAS 124 (888)
T ss_pred cceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEee
Confidence 45899999999986 899999999999999998866654 7899999999999999999999
Q ss_pred EeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEee
Q 001358 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 493 (1092)
||.|+.|.+||+-....+. .+.||...|+.+-|..+.+ ++++.+.|+.|++||+++..|..+.-.|.+.+..+++
T Consensus 125 GskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~ 199 (888)
T KOG0306|consen 125 GSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVL 199 (888)
T ss_pred cCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEEE
Confidence 9999999999998754333 6889999999999998777 8999999999999999999999999999999999999
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCce------E-------EecCCCCceEEEEEecCCCEEEEEecCC---------
Q 001358 494 HAKENIHFIFSISVDGKIKAWLYDSLGAR------V-------DYDAPGLGCTRMAYSANGRRLFSCGTSK--------- 551 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~-------~~~~~~~~i~~~~~s~dg~~l~~~~~~~--------- 551 (1092)
.. ..+++++.|+.+++|++....-. . ......+....++..++++++++-+.+.
T Consensus 200 ~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s 275 (888)
T KOG0306|consen 200 DE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRS 275 (888)
T ss_pred ec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecC
Confidence 54 58999999999999998211000 0 0000111122233333344333332211
Q ss_pred -----------------------------------------------------------------CCceeEEEEeCCC-C
Q 001358 552 -----------------------------------------------------------------EGESFLVEWNESE-G 565 (1092)
Q Consensus 552 -----------------------------------------------------------------~~~~~i~iwd~~~-~ 565 (1092)
-.++.+..+.+.. +
T Consensus 276 ~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~ 355 (888)
T KOG0306|consen 276 KEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSG 355 (888)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCC
Confidence 0022333343332 1
Q ss_pred eE--------EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE
Q 001358 566 AI--------KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1092)
Q Consensus 566 ~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1092)
.. --.+.||. ..|.+++++.+...+++| ..+.+.||+..+.+++.++... .+.+..|-|.++++
T Consensus 356 ~~~p~~~~~~~i~~~GHR---~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 356 KTSPEADRTSNIEIGGHR---SDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYI 427 (888)
T ss_pred CCCccccccceeeeccch---hheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc----cEEEEEecCCCceE
Confidence 11 12345555 899999999887655555 4578999999999999999754 47889999999999
Q ss_pred EEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceee
Q 001358 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 638 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 717 (1092)
++|...|.+.+||+.....+...+.|.+.++.++.. ||++..++++.|.+|++|++..
T Consensus 428 v~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~----------------------pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS----------------------PDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred EEeccCCceEEEEeehhhhhhhhhccccceeeeeec----------------------CCCCceEEecCCcEEEEEeEEE
Confidence 999999999999999988888888777777766664 5666677777777777777541
Q ss_pred ccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCC
Q 001358 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797 (1092)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 797 (1092)
.... | ...+.++..-. ..+.
T Consensus 486 ~~~~-------~--------------gt~~k~lsl~~------------------------------------~rtL--- 505 (888)
T KOG0306|consen 486 VVSV-------P--------------GTQKKVLSLKH------------------------------------TRTL--- 505 (888)
T ss_pred Eecc-------C--------------cccceeeeecc------------------------------------ceEE---
Confidence 1000 0 00000000000 1111
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001358 798 DSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 798 ~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
.-...|.|+.+||||++||++- |++++||-+.+.+....+.+|.-+|.|+.+|| |+++++||+.|+.|+||-++-|
T Consensus 506 --el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 506 --ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFG 582 (888)
T ss_pred --eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccc
Confidence 1467899999999999999997 99999999999999999999999999999999 9999999999999999999999
Q ss_pred eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-Ee
Q 001358 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 955 (1092)
Q Consensus 877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~ 955 (1092)
.|.+.+-+|.+.|.++.|.|+...+.++|.|+.|+-||-+. ...++.+.+|.. .|.+++.+|+|.++++ +.
T Consensus 583 DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k-----Fe~iq~L~~H~~---ev~cLav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 583 DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK-----FEEIQKLDGHHS---EVWCLAVSPNGSFVVSSSH 654 (888)
T ss_pred hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh-----hhhheeeccchh---eeeeeEEcCCCCeEEeccC
Confidence 99999999999999999999999999999999999999887 447788888876 8999999999999999 68
Q ss_pred CCcEEEEEcCC
Q 001358 956 ETHLAIYEAEE 966 (1092)
Q Consensus 956 d~~v~lwd~~~ 966 (1092)
|.+|++|.-..
T Consensus 655 D~sIRlwE~td 665 (888)
T KOG0306|consen 655 DKSIRLWERTD 665 (888)
T ss_pred CceeEeeeccC
Confidence 89999998765
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-50 Score=397.19 Aligned_cols=333 Identities=20% Similarity=0.316 Sum_probs=305.0
Q ss_pred cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
..|...+.||.+.|-|++|+|+|+ .||+|+.|.++++||+.+..+.++ .++|...|.|++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcva 164 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVA 164 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEE
Confidence 467789999999999999999998 599999999999999999988876 889999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeC-----CCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-----d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
|||||+.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ +|++++.||+|+|||+..+.++
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence 999999999999999999999999987754 5889999999999965 556 7999999999999999999999
Q ss_pred EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEec-----------CC------
Q 001358 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-----------NG------ 541 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-----------dg------ 541 (1092)
..+.+|+.+|+|++|- + ..++++|+.|++|++|+...+.....+.+|.+.|+.++.+. .+
T Consensus 241 ~~lsgHT~~VTCvrwG--G-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWG--G-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEeccCccceEEEEEc--C-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 9999999999999983 2 35999999999999999999889999999999999998872 23
Q ss_pred -------------------CEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCe
Q 001358 542 -------------------RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1092)
Q Consensus 542 -------------------~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1092)
.+|++++. +.++++|+... .+++....+|. ..|+.+.|+||+.++++++.|..
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccc
Confidence 34888875 67799999864 45788889998 89999999999999999999999
Q ss_pred EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccc
Q 001358 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 681 (1092)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (1092)
|++||..+|+.+.++.+| ...|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.++
T Consensus 391 VkLW~g~tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws-------- 460 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS-------- 460 (480)
T ss_pred eeeeeCCCcchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec--------
Confidence 999999999999999866 5679999999999999999999999999999999999999999999999996
Q ss_pred cccCCceeecCCCCCCcccceeeccccccceec
Q 001358 682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714 (1092)
Q Consensus 682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~ 714 (1092)
|||..+++|+.|..+++|.
T Consensus 461 --------------pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 --------------PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --------------CCCceeecCCCceEEEeec
Confidence 7899999999999999995
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-49 Score=391.08 Aligned_cols=367 Identities=20% Similarity=0.297 Sum_probs=296.8
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.||.++|.|++|+|+|++||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 77999999999999999999999999999999999986555 8899999999999999999 899999999999999
Q ss_pred CCCCcee-EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358 472 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 472 ~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
.++|+++ ..+.+|..+|++++|.|- ...|..++|++++.
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~---------------------------------------hl~p~~r~las~sk- 225 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPL---------------------------------------HLVPPCRRLASSSK- 225 (480)
T ss_pred CCCCCcccccccCcccceeEEeeccc---------------------------------------ccCCCccceecccC-
Confidence 9999876 678999999999998552 23366667777765
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
++.++|||...+.++..+.+|. .+|+|+.|..+| ++++|+.|++|++|+...|.+...+.+|.+ .|+.++.
T Consensus 226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal 296 (480)
T KOG0271|consen 226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL 296 (480)
T ss_pred ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence 5558889988899999999999 999999998764 899999999999999999999999998876 5888888
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccccc
Q 001358 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1092)
Q Consensus 631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 710 (1092)
+-|- .|-+|..|.+ +....... .....+......
T Consensus 297 sTdy-~LRtgaf~~t--------~~~~~~~s----e~~~~Al~rY~~--------------------------------- 330 (480)
T KOG0271|consen 297 STDY-VLRTGAFDHT--------GRKPKSFS----EEQKKALERYEA--------------------------------- 330 (480)
T ss_pred cchh-hhhccccccc--------cccCCChH----HHHHHHHHHHHH---------------------------------
Confidence 7542 2223332221 11100000 000001100000
Q ss_pred ceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCc
Q 001358 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 790 (1092)
Q Consensus 711 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1092)
..-..++++++++.|.++.+|+-...+ ++
T Consensus 331 ------------------------------~~~~~~erlVSgsDd~tlflW~p~~~k---------------------kp 359 (480)
T KOG0271|consen 331 ------------------------------VLKDSGERLVSGSDDFTLFLWNPFKSK---------------------KP 359 (480)
T ss_pred ------------------------------hhccCcceeEEecCCceEEEecccccc---------------------cc
Confidence 001123456777777777776532211 00
Q ss_pred eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 001358 791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 869 (1092)
Q Consensus 791 ~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~ 869 (1092)
+. .+. +|..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-..|..++|+. |.++|++|+.|.+++
T Consensus 360 i~--rmt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLK 434 (480)
T KOG0271|consen 360 IT--RMT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLK 434 (480)
T ss_pred hh--hhh--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEE
Confidence 11 111 4999999999999999999999 99999999999999999999999999999999 999999999999999
Q ss_pred EEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001358 870 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 870 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd 914 (1092)
+|++.+.++...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus 435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999995
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2e-41 Score=357.87 Aligned_cols=622 Identities=14% Similarity=0.149 Sum_probs=415.4
Q ss_pred ceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE--
Q 001358 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-- 414 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-- 414 (1092)
-..++-+|-.. ++|. -....|.+||+.....-+ ++..|..+++|+|||++|+|+|+|
T Consensus 40 ~~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEc 98 (1080)
T KOG1408|consen 40 ANGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGEC 98 (1080)
T ss_pred CCccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEeccc
Confidence 34566677665 3443 123688999988765443 266788999999999999999998
Q ss_pred eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC--CCcEEEEECCCCceeEEEecCCcceEEEe
Q 001358 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~i~ 492 (1092)
+....+++|++..-..+. ++..|...|+|++|+|.++ ++++.+. |-.|.+||++.......-+ -...|..++
T Consensus 99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~ 172 (1080)
T KOG1408|consen 99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVA 172 (1080)
T ss_pred CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEE
Confidence 366679999999876555 6788999999999999999 6777664 4467889887654433222 345677888
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceE-E--ecCCCCceEEEEEe------------cCCCEEEEEecCCCCceeE
Q 001358 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARV-D--YDAPGLGCTRMAYS------------ANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~--~~~~~~~i~~~~~s------------~dg~~l~~~~~~~~~~~~i 557 (1092)
| ++||.++++.+ ...|++|-++...... . +.+...-.-.+.+. .+..+.++. .+.+
T Consensus 173 f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhL 243 (1080)
T KOG1408|consen 173 F--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHL 243 (1080)
T ss_pred E--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccce
Confidence 8 67888888876 5689999887665221 1 11110000000000 011111111 1112
Q ss_pred EEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC------------------
Q 001358 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG------------------ 619 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~------------------ 619 (1092)
.-+ .+.+++.....-. .....|++.+ .+++++|+.+|.|++|+..+-....+++..
T Consensus 244 vEF--SsRRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s 317 (1080)
T KOG1408|consen 244 VEF--SSRRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNS 317 (1080)
T ss_pred eee--chhhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhccccccccc
Confidence 111 1122211111111 1234555554 578999999999999998775544433211
Q ss_pred ----CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeee---ecccccccceeeeecCCcccccccccCCceeecC
Q 001358 620 ----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD---AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1092)
Q Consensus 620 ----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1092)
...+...++.|++....|.+...|..++|||+++...+. .+--|...|+.+..-|....... ...
T Consensus 318 ~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~-----~ac--- 389 (1080)
T KOG1408|consen 318 ESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPT-----AAC--- 389 (1080)
T ss_pred ccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcc-----ccc---
Confidence 122334568899999999999999999999998764433 34457777777665542111000 000
Q ss_pred CCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCc
Q 001358 693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772 (1092)
Q Consensus 693 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~ 772 (1092)
-|.+ -+++++.|++||+|+++.......... =.++.+-..++.. |+...+..
T Consensus 390 --lp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrR-------------Nils~~l~ki~y~--d~~~q~~~---------- 441 (1080)
T KOG1408|consen 390 --LPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRR-------------NILSANLSKIPYE--DSTQQIMH---------- 441 (1080)
T ss_pred --CCcc-ceeEecCCCcEEEeecccccccceeec-------------ccchhhhhcCccc--cCchhhhh----------
Confidence 1222 378999999999999875322211100 0011111001111 11000000
Q ss_pred ccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEE
Q 001358 773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAF 851 (1092)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 851 (1092)
....-++|-.... . .+....++++++||+|++||+|. .|.++||++...+....+..|..+|.|+.|
T Consensus 442 ----d~~~~~fdka~~s------~--~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLey 509 (1080)
T KOG1408|consen 442 ----DASAGIFDKALVS------T--CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEY 509 (1080)
T ss_pred ----hccCCcccccchh------h--cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEee
Confidence 0001111111100 0 02567899999999999999998 599999999999999999999999999999
Q ss_pred cCC--CCCEEEEEeCCCeEEEEEcCC-ceeeEeeccccCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001358 852 NPH--DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSL 926 (1092)
Q Consensus 852 s~~--d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 926 (1092)
|.. ..++||+++.|..|.|||+.. ..++.++.+|+..|+++.|.-.| ..++++|.|+.|.+--..... .. .+
T Consensus 510 S~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~--~g-~~ 586 (1080)
T KOG1408|consen 510 SFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS--SG-RL 586 (1080)
T ss_pred cCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc--Cc-ee
Confidence 853 357999999999999999965 46789999999999999998887 789999999976543322100 00 11
Q ss_pred ecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccC--CCcCEEEEEEecCCCEEEEEeCCCcEE
Q 001358 927 QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLS 1003 (1092)
Q Consensus 927 ~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~s~Dg~i~ 1003 (1092)
-.-..+......+..++..|..+++++ +.|..|+|||+.+|+..+.+... |.+..-.+...|.|-||++...|.++.
T Consensus 587 f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~ 666 (1080)
T KOG1408|consen 587 FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC 666 (1080)
T ss_pred ccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceE
Confidence 111111111246889999999999999 78999999999999999886654 467777889999999999999999999
Q ss_pred EEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001358 1004 IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 1004 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
++|..+|++++++. .|+..|. .+.|.+ |...|++++.||.|.||.++.
T Consensus 667 ~~Df~sgEcvA~m~--------GHsE~VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 667 FVDFVSGECVAQMT--------GHSEAVT--GVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEeccchhhhhhc--------Ccchhee--eeeecc-cchhheeecCCceEEEEECch
Confidence 99999999998887 3455555 467887 579999999999999999874
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-40 Score=351.96 Aligned_cols=509 Identities=15% Similarity=0.183 Sum_probs=380.7
Q ss_pred EecccCCCCceEEeecCCCceEEEEEc--CcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
+.+..|...++|+|||++|+ ++|+|- ....++||++..-..+.. +..|+-.|+|++|+
T Consensus 72 hlvnssRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFs 131 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFS 131 (1080)
T ss_pred heecccCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeec
Confidence 45567778999999999998 689986 456799999998776654 66799999999999
Q ss_pred CCCCEEEEEeC--CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE----
Q 001358 406 PDGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY---- 479 (1092)
Q Consensus 406 pdg~~las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~---- 479 (1092)
|.++|+++.+. |-.|.+||+....... -..-...|.+++|+.||. +++|.+ ...|++|.++.++...
T Consensus 132 p~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiP 204 (1080)
T KOG1408|consen 132 PGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIP 204 (1080)
T ss_pred CCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCcc
Confidence 99999998764 5568899887543222 123456799999999999 788888 5689999887665210
Q ss_pred ---------EEe------------------------cC-----------------CcceEEEeecccCCccEEEEEecCC
Q 001358 480 ---------SFE------------------------GH-----------------GAPVYSLCPHAKENIHFIFSISVDG 509 (1092)
Q Consensus 480 ---------~~~------------------------~~-----------------~~~v~~i~~~~~~~~~~l~s~~~dg 509 (1092)
.++ || +..-+++++ +.+++++|+.+|
T Consensus 205 l~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g 280 (1080)
T KOG1408|consen 205 LPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKG 280 (1080)
T ss_pred ccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccc
Confidence 000 00 011123333 346899999999
Q ss_pred eEEEEEcCCCCceEEecC--------------------C----CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358 510 KIKAWLYDSLGARVDYDA--------------------P----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 510 ~i~vwd~~~~~~~~~~~~--------------------~----~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.|++++..+..-..++.. . -.....+.|++....|.+... +..+++||++.-
T Consensus 281 ~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 281 MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDV 356 (1080)
T ss_pred eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEecccc
Confidence 999998765432222110 0 012356778888888888765 677999999876
Q ss_pred eEEEEEeeccccCCceEEEEEcCC-----------CCEEEEEeCCCeEEEEECCCCceEEEE-------------e----
Q 001358 566 AIKRTYQGLQLQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQLLTTI-------------D---- 617 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~s~dg~i~iwd~~~~~~~~~~-------------~---- 617 (1092)
+.+......-.|...|+.+.--|- ...+++++.|++||+|+++.+..-..+ .
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~ 436 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST 436 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCc
Confidence 554433322223366666654441 235889999999999999763211100 0
Q ss_pred ------------------CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccc
Q 001358 618 ------------------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1092)
Q Consensus 618 ------------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 679 (1092)
.-+....+.+++.+|+|++||+|..-|.+++|++.+.+....+..|...|.|+.++-..
T Consensus 437 ~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~--- 513 (1080)
T KOG1408|consen 437 QQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV--- 513 (1080)
T ss_pred hhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch---
Confidence 00122458899999999999999999999999999999999999999999999998321
Q ss_pred cccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCC--cEEEEeecCCe
Q 001358 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG--QAIFALASNGV 757 (1092)
Q Consensus 680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~dg~ 757 (1092)
-..++|++++.|.-|.++|... .+.+.....+|...|+++.|.-.| ..+++++.|..
T Consensus 514 ----------------~~~kLLASasrdRlIHV~Dv~r-----ny~l~qtld~HSssITsvKFa~~gln~~MiscGADks 572 (1080)
T KOG1408|consen 514 ----------------LTNKLLASASRDRLIHVYDVKR-----NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS 572 (1080)
T ss_pred ----------------hhhHhhhhccCCceEEEEeccc-----ccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence 1357899999999999999652 233333446799999999999888 78899999977
Q ss_pred eEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee
Q 001358 758 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI 836 (1092)
Q Consensus 758 i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~ 836 (1092)
+.+-..+.. .+|.......-+ -....+..+++.|..++++++. |..|+||++++++..
T Consensus 573 imFr~~qk~-------------------~~g~~f~r~t~t--~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 573 IMFRVNQKA-------------------SSGRLFPRHTQT--LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred hheehhccc-------------------cCceeccccccc--cccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 765322211 011111110000 1345678999999999999998 799999999999999
Q ss_pred EEecC---CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001358 837 LTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 913 (1092)
Q Consensus 837 ~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iw 913 (1092)
+.|++ |.+....+...| .+-|||+.+.|+++.++|..+|+++.+..||+..|+.+.|++|-+.|++++.||.|.||
T Consensus 632 k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 632 KSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred eeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence 99975 556788999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCC
Q 001358 914 DVDG 917 (1092)
Q Consensus 914 d~~~ 917 (1092)
.+..
T Consensus 711 ~lp~ 714 (1080)
T KOG1408|consen 711 KLPL 714 (1080)
T ss_pred ECch
Confidence 9864
No 15
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=9.5e-39 Score=338.65 Aligned_cols=643 Identities=15% Similarity=0.169 Sum_probs=435.6
Q ss_pred EeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCC---EEEEEeC
Q 001358 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS---LLGVAYS 416 (1092)
Q Consensus 340 v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~---~las~~~ 416 (1092)
..|.|.+ ++|.|.. ..|.+||........ .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa~-~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGAG-PAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecCC-ceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3456666 4666543 789999987653333 2889999999999999888 8999999
Q ss_pred CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc--eeEEEecCCcceEEE--e
Q 001358 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSL--C 492 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~i--~ 492 (1092)
|+.|.+|.++. +.+.....+.+|...+.|+. .... ...+...|+++.+||.+..+ ++..+.-....+..+ +
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~--a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCVV--ARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEEEE--eeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999993 44555567777766655554 3222 22223789999999985555 333443333333333 3
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCceEEEEEecCCC---EEEEEecCCCCceeEEEEeCCCCe-
Q 001358 493 PHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGA- 566 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~dg~---~l~~~~~~~~~~~~i~iwd~~~~~- 566 (1092)
+.+.++.-.++.|+.+..|.++.-... .....+.+|...|.+++|...+. +|++++. |..|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecCC
Confidence 444334345666777788888855433 34568899999999999987655 4455543 7889999764322
Q ss_pred --------------------EE----------EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceEE
Q 001358 567 --------------------IK----------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLT 614 (1092)
Q Consensus 567 --------------------~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~ 614 (1092)
.. ..+.||. +.|+++.|+|.+..|++++.|.++.+|...+. --+.
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe---DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~ 305 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE---DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD 305 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc---cceEEEEEccchhhheecccCcceEEEecCCccceEEE
Confidence 11 1123666 99999999999999999999999999987654 3333
Q ss_pred EEeC---CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC---CeeeecccccccceeeeecCCcccccccccCCce
Q 001358 615 TIDA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1092)
Q Consensus 615 ~~~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 688 (1092)
.... .+........-|+|+++.+++-+..|..++|...+. .....+.||...|..+++.
T Consensus 306 ~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~--------------- 370 (764)
T KOG1063|consen 306 VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD--------------- 370 (764)
T ss_pred EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec---------------
Confidence 3221 122234678999999999999999999999994443 3344567999999999996
Q ss_pred eecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCcc
Q 001358 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 768 (1092)
Q Consensus 689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~ 768 (1092)
|.|.++++.+.|.+-|+|-.- +.......+..|+ .|...+.++++-+..-.+++++....+++|+.+..-.
T Consensus 371 -------psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQ-iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv 441 (764)
T KOG1063|consen 371 -------PSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQ-IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV 441 (764)
T ss_pred -------CCCCEEEEeccccceeeeccc-ccccceeeecccc-cccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence 678899999999999998754 2222244444443 5899999999999666688888899999999765421
Q ss_pred ccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEE-EEEeCCe--E-----------EEEEcC---
Q 001358 769 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL-FSASGGV--I-----------SLYIVM--- 831 (1092)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l-~~~sdg~--i-----------~iwd~~--- 831 (1092)
. ......|.+....+.. .....|..+-.|...-+. .+-+.+. + .+....
T Consensus 442 ~------------~l~~i~g~~~~~~~~~--p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Ed 507 (764)
T KOG1063|consen 442 K------------SLMAICGKCFKGSDEL--PDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTED 507 (764)
T ss_pred H------------HHHHHhCccccCchhc--ccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHH
Confidence 0 0000001000000000 012222233333221111 0000011 0 000000
Q ss_pred ------CceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCceeeEeeccccCCeEEEEEcCCCCE
Q 001358 832 ------TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNI 900 (1092)
Q Consensus 832 ------~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~ 900 (1092)
....++.+.+|..+|.+++.+| +++++|+++... .|++|+..+...+..+.+|+-.|+.|+|||||++
T Consensus 508 qLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~ 586 (764)
T KOG1063|consen 508 QLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRY 586 (764)
T ss_pred HHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcE
Confidence 1223456789999999999999 899999988654 7999999999989999999999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCc--eeeee-eccC
Q 001358 901 LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL--TCLKQ-WFPI 976 (1092)
Q Consensus 901 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~--~~~~~-~~~~ 976 (1092)
|+++|+|+++.+|.......... .....+.|.. -|.++.|+||+.++|+ +.|.+|++|..... +.+.. -...
T Consensus 587 LLsvsRDRt~sl~~~~~~~~~e~-~fa~~k~HtR---IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~ 662 (764)
T KOG1063|consen 587 LLSVSRDRTVSLYEVQEDIKDEF-RFACLKAHTR---IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLK 662 (764)
T ss_pred EEEeecCceEEeeeeecccchhh-hhccccccce---EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhc
Confidence 99999999999999866432222 2233344443 5899999999999999 68999999999877 55544 2345
Q ss_pred CCcCEEEEEEec-----CCCEEEEEeCCCcEEEEECCCCce---EEeecccc-ccCCCCccCcccceEEEECCC------
Q 001358 977 SSVPISQATFSC-----DCRMVFTSFVDGTLSIHEASNLEV---QCRILSTA-YLRPTTSCLHVYPHAIAAHPL------ 1041 (1092)
Q Consensus 977 h~~~v~~l~fs~-----dg~~l~t~s~Dg~i~vwd~~~~~~---~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~------ 1041 (1092)
++..|+.++|.| .+..+++|-..|.|.+|....-.. ...+.... --+...|.+.|. .+.|.|.
T Consensus 663 ~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~--rl~w~p~~~~~~~ 740 (764)
T KOG1063|consen 663 FSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVN--RLLWRPTCSDDWV 740 (764)
T ss_pred cCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhh--eeEeccccccccc
Confidence 789999999987 223678888999999999661111 11111111 111122344455 4566653
Q ss_pred ---CCCEEEEEeCCCcEEEEecC
Q 001358 1042 ---KPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1042 ---~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
....|++|++|..++++++.
T Consensus 741 ~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 741 EDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccceeEEeeecccceeEEeecc
Confidence 22357999999999999874
No 16
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.5e-39 Score=341.09 Aligned_cols=623 Identities=13% Similarity=0.117 Sum_probs=417.4
Q ss_pred eeEecccCCCCceEEeecCCCc--eEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 326 VAQTLIEGSSSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~--~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
...+|.||..+|+|+.|-|+.+ -++++|+.|+.|++|.++......... +.+|...+ ++
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~-----------------~~g~~~~~--~c 106 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT-----------------IQGHCKEC--VC 106 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe-----------------ecCcceeE--EE
Confidence 4578999999999999998876 147899999999999998444333222 44555444 44
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCCcc-ceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC--ceeEE
Q 001358 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG--SRTYS 480 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~--~~~~~ 480 (1092)
++.......+...|+++.+||.+..+... ....+.....--.|+++.++.+.++++.|+.+..|.++.-.++ +.+..
T Consensus 107 v~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~e 186 (764)
T KOG1063|consen 107 VVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAE 186 (764)
T ss_pred EEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEE
Confidence 44333333334789999999996544111 1111222222345777788666667888888888988875544 45678
Q ss_pred EecCCcceEEEeecccCC-ccEEEEEecCCeEEEEEcCCCC-----------------ce--------------EEecCC
Q 001358 481 FEGHGAPVYSLCPHAKEN-IHFIFSISVDGKIKAWLYDSLG-----------------AR--------------VDYDAP 528 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~-----------------~~--------------~~~~~~ 528 (1092)
+.||.+.|.+++|..... .-+|+++|.|..||+|.+.... .. ..+.+|
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 899999999999976544 5689999999999999764322 00 012478
Q ss_pred CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC--eEEEEEeecccc--CCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001358 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQ--HNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
...|.++.|+|.+..|++++. |.++.+|.+.+. --+....--... ........|+|+++.+++-+..|..++
T Consensus 267 eDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 267 EDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred ccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 889999999999998998876 666999987654 333332211111 245888999999999999999999999
Q ss_pred EECC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC----CeeeecccccccceeeeecCCcccc
Q 001358 605 WDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVT 679 (1092)
Q Consensus 605 wd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~ 679 (1092)
|... ........-..++...|..++|+|.|.+|++.+.|.+-|+|..-.. ..+...+.|...++|+++-+
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn----- 417 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN----- 417 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-----
Confidence 9833 3344444445567788999999999999999999999999865521 23445556777777777752
Q ss_pred cccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceeccc------CCccccccEEEEEEecCCcEEEEee
Q 001358 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL------PSKVKANKISRLTYNNGGQAIFALA 753 (1092)
Q Consensus 680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~------~~~~~~~~i~~l~~s~~g~~l~~~~ 753 (1092)
....+++|..+..+|+|+....-...+..+.- ........|..+-.|.+.-..= -.
T Consensus 418 -----------------~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~-e~ 479 (764)
T KOG1063|consen 418 -----------------EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG-ET 479 (764)
T ss_pred -----------------CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc-cc
Confidence 24456777788888998854221110000000 0001122233333333221100 00
Q ss_pred cCCee-EEeeecCCccccCcccccccCCccccCCCCCceeeecC-----CCCCCCCCeeEEEEecCCCEEEEEeC-----
Q 001358 754 SNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT-----TDSNSQEAVPCFALSKNDAYLFSASG----- 822 (1092)
Q Consensus 754 ~dg~i-~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~v~~~~~s~dg~~l~~~sd----- 822 (1092)
.+|.. ..|. + ...+.....+..+.....+....+ +..+|...|.+++.+|+|+++|++..
T Consensus 480 ~~G~~~~~~~-e--------t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~e 550 (764)
T KOG1063|consen 480 NTGGEAAVCA-E--------TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKE 550 (764)
T ss_pred ccccccceee-e--------cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCcc
Confidence 11110 0000 0 000011111112222222222111 12369999999999999999999961
Q ss_pred -CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce----eeEeeccccCCeEEEEEcCC
Q 001358 823 -GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDA 897 (1092)
Q Consensus 823 -g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h~~~V~~l~~spd 897 (1092)
..|++|+..+...++.+.+|.-.|+.++||| |+++|++.+.|.++.+|...... .....+.|+.-|+++.|+||
T Consensus 551 hAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd 629 (764)
T KOG1063|consen 551 HAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD 629 (764)
T ss_pred ceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc
Confidence 3499999999999999999999999999999 99999999999999999986532 13446789999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCC-----CEEEEE-eCCcEEEEEcCC-----
Q 001358 898 LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-----TRFLLV-HETHLAIYEAEE----- 966 (1092)
Q Consensus 898 g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-----~~la~~-~d~~v~lwd~~~----- 966 (1092)
++++||+|+|++|++|........ .+... .....+..|+.+++.|-. ..+++| ..|.|.+|....
T Consensus 630 e~~FaTaSRDK~VkVW~~~~~~d~---~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~ 705 (764)
T KOG1063|consen 630 EKYFATASRDKKVKVWEEPDLRDK---YISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQV 705 (764)
T ss_pred cceeEEecCCceEEEEeccCchhh---hhhhh-chhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccc
Confidence 999999999999999999875311 11111 112223478999987632 245566 568999998541
Q ss_pred --cee----eeeeccCCCcCEEEEEEecC----------CCEEEEEeCCCcEEEEECC
Q 001358 967 --LTC----LKQWFPISSVPISQATFSCD----------CRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 967 --~~~----~~~~~~~h~~~v~~l~fs~d----------g~~l~t~s~Dg~i~vwd~~ 1008 (1092)
+.. ...-..+|...|..++|+|- ...|++|+.|.+++++++.
T Consensus 706 ~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 706 TVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 110 01112346889999999974 2357999999999999875
No 17
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-41 Score=338.76 Aligned_cols=284 Identities=19% Similarity=0.250 Sum_probs=266.7
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC--C
Q 001358 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--G 408 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd--g 408 (1092)
.|.+.+|..+.||+|++ +||||+.+|.++||+..+...+.+ +.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence 36677999999999998 799999999999999999977665 8899999999999996 6
Q ss_pred CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce
Q 001358 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
..+|+|+.||++++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999977666 7889999999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001358 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
.+++|.+ ||.+++||+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+. |++++|||++....+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 9999954 7789999999999999999999999999999999999999999999999986 778999999999999
Q ss_pred EEEeeccccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001358 569 RTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
.++.+|. +-|..+.|+| .|.+|++++.|++++||...+..+++.+.+|.. .|.++..++|+..+++++.|.+++
T Consensus 381 y~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 381 YTIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred eeccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceee
Confidence 9999998 9999999998 688899999999999999999999999997755 599999999999999999999999
Q ss_pred EEE
Q 001358 648 ILE 650 (1092)
Q Consensus 648 iw~ 650 (1092)
+|.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 995
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-39 Score=328.74 Aligned_cols=345 Identities=19% Similarity=0.268 Sum_probs=288.7
Q ss_pred CCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCC--CCceeeeeeeeeecccccceeEEeeecCCCCcE
Q 001358 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~--~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
+|......+. |+.+|.+++|+|-..-++|+|+.|-+.++|++.. +.......+ ..|...--. -...+..|
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l-----rh~~~~~~~--s~~~nkdV 238 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL-----RHCIREGGK--SVPSNKDV 238 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh-----hhhhhhhcc--cCCccCCc
Confidence 5666667777 9999999999998765899999999999999975 111110000 001100000 01134689
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
++++|+.+|..||+|+.||.++||+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|...+
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence 999999999999999999999999988743 22 6888999999999999999 89999999999999999999999
Q ss_pred EEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.+.-|..+-..+.|-. ...+++.+.||.|+|+.+....+..++.+|.++|.++.|.|.|.+|++++. |+++++
T Consensus 313 ~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki 385 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI 385 (524)
T ss_pred eeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence 9999998866667642 247999999999999999999999999999999999999999999999986 778999
Q ss_pred EeCCCCeEEEEEeeccccCCceEEEEEcCCC---------CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
|+.........+..|. ..|+.+.|+|.+ ..+++++.|++|++||+..+.++..+..| ..+|.+++|
T Consensus 386 Ws~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvaf 460 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAF 460 (524)
T ss_pred eecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEe
Confidence 9999999999999988 899999999974 46889999999999999999999998755 457999999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccccc
Q 001358 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1092)
Q Consensus 631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 710 (1092)
+|+|+++|+|+.||.|.+|+.++++.++...
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~------------------------------------------------- 491 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ------------------------------------------------- 491 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccchheeEeec-------------------------------------------------
Confidence 9999999999999999999999987776554
Q ss_pred ceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeee
Q 001358 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1092)
Q Consensus 711 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~ 763 (1092)
..+.|..+.|+.+|..+.++.+||.+++-++
T Consensus 492 ----------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 ----------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ----------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 2334677888888888888888888887664
No 19
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=329.39 Aligned_cols=580 Identities=16% Similarity=0.175 Sum_probs=419.9
Q ss_pred EeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001358 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1092)
Q Consensus 340 v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1092)
..+..-|..++++.+.+++..+||++.-..+.. -..+...|+|++=..+ +..+++.. .
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g~-~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASGN-K 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecCc-E
Confidence 455555556788888999999999988766653 2357788998887654 44444333 3
Q ss_pred EEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-cee----EEEecCCcceEEEeec
Q 001358 420 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRT----YSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 420 i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~----~~~~~~~~~v~~i~~~ 494 (1092)
|.+|.. |+.+. ..+.+|.+.|.-+. +-|. .++++..++.+.||+..++ ..+ .-++...+.|+++. +
T Consensus 97 i~~~~r--gk~i~--~~~~~~~a~v~~l~--~fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIR--HTTLLHGAKVHLLL--PFGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEE--EEeccccceEEEEe--eecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666654 33222 24567777777665 3456 6889999999999998874 221 12222333377764 4
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001358 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
|+.--..++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|.|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 4433457899999999999999999999999999999999999998888888876 677999999999999999976
Q ss_pred cccCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358 575 QLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
. +.|++++|..||+.+++ |+..|.+-+||++..+.+..+... +...+....|-|....+++++.|+++++|-.++
T Consensus 244 ~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~na-h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 244 W---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA-HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred c---cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecc-ccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence 6 89999999999976655 667799999999998888776522 234688899999999999999999999886553
Q ss_pred C----CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccC
Q 001358 654 S----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 729 (1092)
Q Consensus 654 ~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~ 729 (1092)
+ +.++.-.||.
T Consensus 320 ~dg~pR~LR~R~GHs----------------------------------------------------------------- 334 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHS----------------------------------------------------------------- 334 (910)
T ss_pred CCCcchheeeccCCC-----------------------------------------------------------------
Confidence 3 3333333444
Q ss_pred CccccccEEEEEEe-cCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001358 730 SKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 808 (1092)
Q Consensus 730 ~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~ 808 (1092)
.+..++.|. .+|..+.+++.|++++.+++-...+...-.. ..+...++...... +..-.-.+|..+
T Consensus 335 -----~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~~~~-~~~~k~p~i~~f 401 (910)
T KOG1539|consen 335 -----APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVNVFS-TEKLKLPPIVEF 401 (910)
T ss_pred -----CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccccccc-hhhhcCCcceee
Confidence 444444444 4455555555555555554433222111000 00011100000000 000022345555
Q ss_pred EEecC-----CCEEEEE-eCCeEEEEEcCCcee-eEEec-----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001358 809 ALSKN-----DAYLFSA-SGGVISLYIVMTFKT-ILTIM-----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 809 ~~s~d-----g~~l~~~-sdg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
++... .+.++.. ++...+.|++..... ...+. .....+++++.++ .|++.+.|+..|.|.+|++++|
T Consensus 402 a~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 402 AFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred ecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccC
Confidence 55432 1233332 257799999876544 22332 2346889999999 9999999999999999999999
Q ss_pred eeeEee---ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001358 877 EVISKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 877 ~~~~~l---~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
-....+ ..|.++|++++...-++.+++++.+|.+++||++.... +.... .+..+..+..+.....+|+
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-----~~~l~----l~~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-----KKSLR----LGSSITGIVYHRVSDLLAI 551 (910)
T ss_pred eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce-----eeeec----cCCCcceeeeeehhhhhhh
Confidence 998888 58999999999988889999999999999999998542 22221 1235788888888888888
Q ss_pred -EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCccc
Q 001358 954 -VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1032 (1092)
Q Consensus 954 -~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1032 (1092)
..|-.|.++|+.+.+.++. +.+|+..|+.++|||||++|++++.|++|++||+.++.++..+... ..
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----------~~ 619 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----------SP 619 (910)
T ss_pred hcCceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----------Cc
Confidence 5677899999999988887 6789999999999999999999999999999999999999777611 12
Q ss_pred ceEEEECCCCCCEEEEEeCC-CcEEEEe
Q 001358 1033 PHAIAAHPLKPTQFAVGLTN-GEVYVIE 1059 (1092)
Q Consensus 1033 ~~~~~~~p~~~~~l~~~~~d-g~v~~w~ 1059 (1092)
+..+.|+| .+++|||+..| ..|++|-
T Consensus 620 ~~sls~SP-ngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 620 CTSLSFSP-NGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ceeeEECC-CCCEEEEEEecCceEEEEE
Confidence 35789999 58999999999 6899997
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-39 Score=306.75 Aligned_cols=298 Identities=20% Similarity=0.284 Sum_probs=255.9
Q ss_pred eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
+.-+|++|+++|+.++..+.+..++.+++.|.++.+|++.......- .+ ...+.||+..|..++.+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G------------~~--~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG------------VP--VRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC------------ce--eeeeeccceEecceEEc
Confidence 45789999999999999999877999999999999999876533221 11 12288999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC-
Q 001358 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH- 484 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~- 484 (1092)
+||++.++++.|+++++||+.+|+..+ .|.+|...|.+++|++|++ .+++|+.|.+|++|++. |.+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCC
Confidence 999999999999999999999996554 6889999999999999999 69999999999999955 4455555444
Q ss_pred -CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358 485 -GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 485 -~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
.+.|.+++|+|+++..+|++++.|+++++||+++.+....+.+|.+.++.+++||||...++|+. ++.+.+||++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~ 222 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLN 222 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEcc
Confidence 78999999999988899999999999999999999999999999999999999999999999875 6679999999
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC-------CCCCceEEEccCCCE
Q 001358 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGTL 636 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~ 636 (1092)
.++.+..+... ..|.+++|+|+...|+.+ .+..|+|||++++..+..+..... .+...+++|++||..
T Consensus 223 ~~k~lysl~a~----~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~t 297 (315)
T KOG0279|consen 223 EGKNLYSLEAF----DIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQT 297 (315)
T ss_pred CCceeEeccCC----CeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcE
Confidence 99998887764 589999999986555554 445699999999998877754422 233567899999999
Q ss_pred EEEEeCCCeEEEEECC
Q 001358 637 LAVIANENRIKILETP 652 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~ 652 (1092)
|++|..|+.|++|.+.
T Consensus 298 Lf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 298 LFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeeecCCcEEEEEee
Confidence 9999999999999864
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.7e-39 Score=304.78 Aligned_cols=295 Identities=17% Similarity=0.250 Sum_probs=268.6
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
...++|+||.+.|.++.|++|.+ .++++|.||.+.|||.-|....+. ++-....|..+||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~ 105 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAY 105 (343)
T ss_pred eeEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEE
Confidence 34489999999999999999998 689999999999999999887764 3346789999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCC--C-CccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001358 405 SPDGSLLGVAYSKHIVQLYAYHGG--S-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~--~-~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~ 481 (1092)
+|.|+++|+|+-|+...||++.+. + ..+...++.+|++.+.|+.|.+|+. |+|++.|.+..+||+++|+.+..|
T Consensus 106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 106 SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEe
Confidence 999999999999999999999865 2 2344457899999999999999886 999999999999999999999999
Q ss_pred ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEe
Q 001358 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1092)
.||.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|.+++|.|+|..+++|+. +++.++||
T Consensus 183 ~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyD 257 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYD 257 (343)
T ss_pred cCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEe
Confidence 999999999999875 7789999999999999999999999999999999999999999999999986 77799999
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001358 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
++..+.+..+.... ...+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|.. .|.++..+|||.-+++|+
T Consensus 258 lRaD~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 258 LRADQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGS 334 (343)
T ss_pred ecCCcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecc
Confidence 99999998888543 456899999999999999999999999999999999999987754 699999999999999999
Q ss_pred CCCeEEEEE
Q 001358 642 NENRIKILE 650 (1092)
Q Consensus 642 ~dg~i~iw~ 650 (1092)
.|..++||.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999994
No 22
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-40 Score=332.38 Aligned_cols=285 Identities=17% Similarity=0.258 Sum_probs=265.9
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC
Q 001358 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~ 473 (1092)
|.+.+|..+.||+|++.||+||.+|.+++|+..+...+. ++.+|...|.++.|+|......++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 456789999999999999999999999999999875444 89999999999999998422379999999999999999
Q ss_pred CCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCC
Q 001358 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
+..++..+.+|...|..++|+| +|++|+|++.|.+-++||+.++.......+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 9999999999999999999966 6789999999999999999999999999999999999999999999999987
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc-
Q 001358 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK- 632 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~- 632 (1092)
|..-++||+++|.++..+.+|. .+|.++.|+|+|..+++||.|++++|||++..+.+.++..|.. .|..|.|+|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~ 398 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ 398 (459)
T ss_pred cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence 6678999999999999999988 9999999999999999999999999999999999999887754 699999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccce
Q 001358 633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 633 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~ 712 (1092)
.|.+|++++.|++++||...+..++..+.||.+.|.++.++ +|+..+++++.|.++++
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis----------------------~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS----------------------PDSQAIATSSFDRTIKL 456 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec----------------------cCCceEEEeccCceeee
Confidence 78999999999999999999999999999999999999996 78999999999999999
Q ss_pred ec
Q 001358 713 EK 714 (1092)
Q Consensus 713 w~ 714 (1092)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 95
No 23
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-38 Score=327.94 Aligned_cols=479 Identities=17% Similarity=0.274 Sum_probs=360.1
Q ss_pred EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+.+..|++.|-+|.|+|...+ +.++-..|.|.|||.++..+++.+++ ...+|.+..|-+-
T Consensus 7 rk~~~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVksfeV-------------------~~~PvRa~kfiaR 66 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKSFEV-------------------SEVPVRAAKFIAR 66 (794)
T ss_pred hHhhccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeeeeee-------------------cccchhhheeeec
Confidence 456678999999999999985 56667789999999999998876332 5678999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEecCCc
Q 001358 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGA 486 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~ 486 (1092)
-+++++|++|..|+||+.++++.+. .+.+|.+.|.+++.+|... +++|+|.|-+|++||++.+ .+.++|.||..
T Consensus 67 knWiv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H 141 (794)
T KOG0276|consen 67 KNWIVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEH 141 (794)
T ss_pred cceEEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence 9999999999999999999997665 7899999999999999988 8999999999999999876 77899999999
Q ss_pred ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCC--CEEEEEecCCCCceeEEEEeCCC
Q 001358 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
.|.+++|+|. |...+++++-|++|++|.+....+..++.+|...|.++.+-+-| .+|++++. +..+.+||.++
T Consensus 142 yVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQt 216 (794)
T KOG0276|consen 142 YVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQT 216 (794)
T ss_pred EEEEEEecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecch
Confidence 9999999987 55799999999999999999999999999999999999998755 58999875 77899999999
Q ss_pred CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
..+++++.||. ..|..++|+|.-..+++|++||+++||+..+.++..++... ...+.+++-.+.++.+++|.++|
T Consensus 217 k~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg 291 (794)
T KOG0276|consen 217 KSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEG 291 (794)
T ss_pred HHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCC
Confidence 99999999999 89999999999999999999999999999998888887654 34689999999888899999888
Q ss_pred eEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccce
Q 001358 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~ 724 (1092)
.+.+ .+....+...+. +.|+. +|...
T Consensus 292 ~i~v-~lgreeP~vsMd----------------------------------~~gKI-----------iwa~~-------- 317 (794)
T KOG0276|consen 292 SVTV-KLGREEPAVSMD----------------------------------SNGKI-----------IWAVH-------- 317 (794)
T ss_pred cEEE-EccCCCCceeec----------------------------------CCccE-----------EEEcC--------
Confidence 7755 222221111111 11111 12110
Q ss_pred ecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCce--eeecCCCCCCC
Q 001358 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF--MVNDTTDSNSQ 802 (1092)
Q Consensus 725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 802 (1092)
+.|..+-.- +.+..+ ++..|+.+ ...++. .-.
T Consensus 318 ----------~ei~~~~~k-------s~~~~~---------------------------ev~DgErL~LsvKeLg--s~e 351 (794)
T KOG0276|consen 318 ----------SEIQAVNLK-------SVGAQK---------------------------EVTDGERLPLSVKELG--SVE 351 (794)
T ss_pred ----------ceeeeeece-------eccCcc---------------------------cccCCccccchhhhcc--ccc
Confidence 111111100 000000 01111100 000010 011
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee
Q 001358 803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1092)
-....++-+|+|+++++++||.-.||..-..+. ...+......|++ |....|+-..++.|+++ ++.+....+
T Consensus 352 iyPq~L~hsPNGrfV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~ksi 423 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSI 423 (794)
T ss_pred cchHHhccCCCCcEEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCceEEE--ecceecccc
Confidence 123457889999999999999999987543322 2445667889999 76777888888999998 666666665
Q ss_pred ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEE
Q 001358 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 962 (1092)
Q Consensus 883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lw 962 (1092)
...-. +..--.|.+|...+ ++.+++||.++++. ++..+-. ...+.|+.+|.+++++.|...+++
T Consensus 424 ~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~l-----VrrI~v~------~k~v~w~d~g~lVai~~d~Sfyil 487 (794)
T KOG0276|consen 424 RPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGEL-----VRRIEVT------SKHVYWSDNGELVAIAGDDSFYIL 487 (794)
T ss_pred ccccc----eeeecCCceEEEEe-CCeEEEEEcccceE-----EEEEeec------cceeEEecCCCEEEEEecCceeEE
Confidence 42111 11112355555555 45599999998663 3333322 347999999999999888886666
Q ss_pred EcC
Q 001358 963 EAE 965 (1092)
Q Consensus 963 d~~ 965 (1092)
...
T Consensus 488 ~~n 490 (794)
T KOG0276|consen 488 KFN 490 (794)
T ss_pred Eec
Confidence 553
No 24
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=321.35 Aligned_cols=547 Identities=13% Similarity=0.152 Sum_probs=404.8
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCE
Q 001358 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
..+.+.|+|++-..+-. ++|.| ..|.+|. .|+.+. .+..+|...|.-+.. =|.+
T Consensus 73 ~~lp~~I~alas~~~~v-y~A~g---~~i~~~~--rgk~i~------------------~~~~~~~a~v~~l~~--fGe~ 126 (910)
T KOG1539|consen 73 KPLPDKITALASDKDYV-YVASG---NKIYAYA--RGKHIR------------------HTTLLHGAKVHLLLP--FGEH 126 (910)
T ss_pred CCCCCceEEEEecCceE-EEecC---cEEEEEE--ccceEE------------------EEeccccceEEEEee--ecce
Confidence 46778999999887764 44544 4566665 343332 125567777776653 4889
Q ss_pred EEEEeCCCEEEEEEccCC-CCccceEEec-ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce
Q 001358 411 LGVAYSKHIVQLYAYHGG-SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~-~~~~~~~~l~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
++++..++.+.||+..++ +......++. ...+.|+++. +|..-.-.++.|+.+|.+++|++++++.+++++++...|
T Consensus 127 lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~I 205 (910)
T KOG1539|consen 127 LIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRI 205 (910)
T ss_pred EEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccce
Confidence 999999999999999884 2211111222 2222377664 554321148889999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001358 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
+++.-+|.- ..++.|..+|+|.++++...+.+..+....+.|++++|..||..+.+.+. ..|.+.+||++..+.+
T Consensus 206 T~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 206 TAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLI 280 (910)
T ss_pred eEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeee
Confidence 999775544 58999999999999999999999999988899999999999998776653 2567999999998888
Q ss_pred EEEe-eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC--Cc--eEEEEeCCCCCCCCceEEEc-cCCCEEEEEeC
Q 001358 569 RTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQ--LLTTIDAGGGLPENPRICFN-KNGTLLAVIAN 642 (1092)
Q Consensus 569 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~--~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~ 642 (1092)
.... .|. +.+....|.|....+++++.|+.+++|=.++ |. .++... +|..+..++.|. .+|..+.+++.
T Consensus 281 ~v~~nah~---~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~irfy~~~g~~ilsa~~ 355 (910)
T KOG1539|consen 281 NVTRNAHY---GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSCIRFYGSQGHFILSAKQ 355 (910)
T ss_pred eeeecccc---CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchheeeeccCcEEEEeccc
Confidence 7776 444 8899999999999999999999999885553 42 233333 445567889887 68999999999
Q ss_pred CCeEEEEECCCCCeeeeccc------------------ccccceeeeecCCcccccccccCCceeecCCCCCCcccceee
Q 001358 643 ENRIKILETPESNSVDAAGV------------------LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 704 (1092)
Q Consensus 643 dg~i~iw~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~ 704 (1092)
|++++.+++.....-+.+.. .-.+|..+++..... ....+.+...
T Consensus 356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE-----------------~~W~Nv~~~h 418 (910)
T KOG1539|consen 356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENARE-----------------KEWDNVITAH 418 (910)
T ss_pred CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchh-----------------hhhcceeEEe
Confidence 99999988763311111110 001111121110000 1223444444
Q ss_pred ccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCcccc
Q 001358 705 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 784 (1092)
Q Consensus 705 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 784 (1092)
-.+...+.|++.....++...-.-+.......+.+++.++-|++.+.|.+.|.|.+|+++.+-.
T Consensus 419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~---------------- 482 (910)
T KOG1539|consen 419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH---------------- 482 (910)
T ss_pred cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee----------------
Confidence 5556788899876555433322222223456789999999999999999999999999876521
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 001358 785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 863 (1092)
Q Consensus 785 ~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~ 863 (1092)
...+- ..+.|..+|+.++...-++.+++++ +|.+.+||..+...+..+. -...++++..+. ...++|.+.
T Consensus 483 ------r~sf~-~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~ 553 (910)
T KOG1539|consen 483 ------RKSFG-DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIAL 553 (910)
T ss_pred ------ecccc-cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhhc
Confidence 11110 1124899999999998888888887 8999999999888777765 446778888888 778999999
Q ss_pred CCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEE
Q 001358 864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943 (1092)
Q Consensus 864 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1092)
.|-.|+++|..+.+.++.|.||++.|++++|||||++|++++.|++|++||+.++.......+. .+..++.
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sls 624 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSLS 624 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------CcceeeE
Confidence 9999999999999999999999999999999999999999999999999999997654432222 2578999
Q ss_pred EecCCCEEEEEe-C-CcEEEEEcC
Q 001358 944 FHKDQTRFLLVH-E-THLAIYEAE 965 (1092)
Q Consensus 944 ~s~dg~~la~~~-d-~~v~lwd~~ 965 (1092)
|||+|.+||+.. | ..|++|.-.
T Consensus 625 ~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 625 FSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ECCCCCEEEEEEecCceEEEEEch
Confidence 999999999953 3 569999743
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.2e-37 Score=292.19 Aligned_cols=287 Identities=15% Similarity=0.179 Sum_probs=265.3
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
+|+||.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ ++++|+.|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 488999999999999999999999999999999998865333 4556778899999999999 89999999999999
Q ss_pred ECCCC------ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEec-CCCE
Q 001358 471 DAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR 543 (1092)
Q Consensus 471 d~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~ 543 (1092)
++.+. +..+.+.+|.+.+.++.|.. | ..|++++.|.+..+||++++.....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99865 34577899999999999854 3 5799999999999999999999999999999999999999 9999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001358 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
+++++- +...++||++.+.++++|.+|+ ..|+++.|.|+|.-+++|++|++.++||++..+.+..+.......
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 999987 6669999999999999999999 999999999999999999999999999999999999998877778
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccccee
Q 001358 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
+|++++||..|++|.+|..|..+.+||.-.++.+..+.+|.+.|.++..+ |||..+++
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----------------------~DG~av~T 332 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----------------------PDGMAVAT 332 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----------------------CCCcEEEe
Confidence 89999999999999999999999999999999999999999999999996 77888999
Q ss_pred eccccccceec
Q 001358 704 VEAENKSEVEK 714 (1092)
Q Consensus 704 ~~~d~~i~~w~ 714 (1092)
|+.|.++|||.
T Consensus 333 gSWDs~lriW~ 343 (343)
T KOG0286|consen 333 GSWDSTLRIWA 343 (343)
T ss_pred cchhHheeecC
Confidence 99999999994
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1e-36 Score=283.66 Aligned_cols=293 Identities=17% Similarity=0.273 Sum_probs=251.3
Q ss_pred ceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEcc
Q 001358 347 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 426 (1092)
Q Consensus 347 ~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~ 426 (1092)
.-+|++++.|.+|++|...+|.+.++ +....+.|+.+...||+++||+++... |++||+.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~ 69 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLN 69 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEEcc
Confidence 35899999999999999999999876 334567899999999999999997665 9999999
Q ss_pred CCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe
Q 001358 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506 (1092)
Q Consensus 427 ~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~ 506 (1092)
++..- +..++.+|...|+++.|..||+ ++++||.||+++|||++...+.+.++ |..+|+++.++| +..-|++|.
T Consensus 70 S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp--nQteLis~d 143 (311)
T KOG0315|consen 70 SNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP--NQTELISGD 143 (311)
T ss_pred CCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC--CcceEEeec
Confidence 98754 5668999999999999999999 89999999999999999977777775 779999999966 556899999
Q ss_pred cCCeEEEEEcCCCCceEEec-CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe------EEEEEeeccccCC
Q 001358 507 VDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQLQHN 579 (1092)
Q Consensus 507 ~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~~~~~ 579 (1092)
.+|.|++||+........+. .....|.+++..|||.+++.+.. .+..++|++-++. .+..++.|. +
T Consensus 144 qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~---~ 216 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN---G 216 (311)
T ss_pred CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc---c
Confidence 99999999999876655443 34568999999999999998865 6679999987653 344566666 8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeee
Q 001358 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA 659 (1092)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 659 (1092)
.+..+.++|++++|+++|.|.+++||+.++. ....+...++...+..++||.||++|++++.|+..++|++..++.+..
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence 8999999999999999999999999999988 333333344456799999999999999999999999999999999999
Q ss_pred cccccccceeeeec
Q 001358 660 AGVLSDNLRKLSVN 673 (1092)
Q Consensus 660 ~~~~~~~v~~~~~~ 673 (1092)
..+|.....|++..
T Consensus 296 y~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 296 YQGHHKAAVCVALN 309 (311)
T ss_pred cCCcccccEEEEee
Confidence 99998887777654
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.3e-36 Score=329.74 Aligned_cols=277 Identities=18% Similarity=0.263 Sum_probs=242.0
Q ss_pred ccCCCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCcee--------eeeeeeeec----ccccce
Q 001358 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF--------IRNFKVWDI----GACSML 386 (1092)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~--------~~~~~~~d~----~~~~~~ 386 (1092)
...+|.-|..++..-...++|..||+|++ +||.|-.|..|++|.+...+... ......-|+ ..-...
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 56678888888887777999999999998 89999999999999998543211 000000011 111122
Q ss_pred eEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCc
Q 001358 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1092)
Q Consensus 387 ~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~ 466 (1092)
.....+.||+++|..+.|+||.++|+++|.|++|++|.+.+..++- ..+||..+|+++.|+|-|- +++|+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 2334589999999999999999999999999999999999976554 6789999999999999998 8999999999
Q ss_pred EEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEE
Q 001358 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
.++|..+...+++.+.+|-..|.|+.|+| +..++++||.|.++|+||..++..+..+.+|.++|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 99999999999999999999999999976 5579999999999999999999999999999999999999999999999
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001358 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1092)
++. ++.|.+||+.+++.+..+.+|. +.|.++.|+.+|..|++|+.|.+|++||+..-
T Consensus 595 g~e----d~~I~iWDl~~~~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 595 GDE----DGLIKIWDLANGSLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ccc----CCcEEEEEcCCCcchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 976 7779999999999999999997 99999999999999999999999999998753
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-35 Score=282.05 Aligned_cols=296 Identities=17% Similarity=0.185 Sum_probs=249.4
Q ss_pred ccccccEEEEEEecC-CcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001358 731 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 809 (1092)
Q Consensus 731 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~ 809 (1092)
.+|.+.|..++..+. ...++.++.|..+.+|++... |...|..... +. +|...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~--~~--GHsH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR--LT--GHSHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee--ee--ccceEecceE
Confidence 459999999999887 556778888999999998764 2334443333 33 4999999999
Q ss_pred EecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecc-ccC
Q 001358 810 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSK 887 (1092)
Q Consensus 810 ~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~ 887 (1092)
.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|++|++|+............ |++
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE 149 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence 999999999998 89999999999999999999999999999999 899999999999999999985544433333 378
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEc
Q 001358 888 RVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEA 964 (1092)
Q Consensus 888 ~V~~l~~spd--g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~ 964 (1092)
-|.|+.|+|+ ..+++++|.|++|++||+.+ .+..+.+.+|.. .++.+++||||.+.++ +.||.+.+||+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----~~l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----CQLRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----cchhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 9999999998 78999999999999999998 446666777665 8999999999999999 68999999999
Q ss_pred CCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCC
Q 001358 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1044 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~ 1044 (1092)
+.++.+.. .+|...|.+++|+|+.-+|+.+ .+..|+|||++++..+..+.+-..-+ ....+.+.+++++|++ ||.
T Consensus 222 ~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG~ 296 (315)
T KOG0279|consen 222 NEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DGQ 296 (315)
T ss_pred cCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CCc
Confidence 99999765 3578999999999998666655 56679999999999988877444333 2235567778999998 699
Q ss_pred EEEEEeCCCcEEEEecC
Q 001358 1045 QFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1045 ~l~~~~~dg~v~~w~~~ 1061 (1092)
.|++|..|+.|++|.+.
T Consensus 297 tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 297 TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEeeecCCcEEEEEee
Confidence 99999999999999984
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-34 Score=301.69 Aligned_cols=465 Identities=15% Similarity=0.206 Sum_probs=344.6
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..|+..|.++.|+|....++++-.+|.|.|||.++...++ .+.-..-+|.++.|-+--+ ++++|+.|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 34488999999999999999999999999999999987776 5666778999999998877 899999999999999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEec-CCCEEEEEec
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~ 549 (1092)
..+++.++.|..|.+.|.+++.+|.. .+++++|.|-+|++||++.. .+..++.+|.+-|..++|.| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999998754 79999999999999999875 45779999999999999999 5568888887
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+++|.+|.+.+..+..++.+|. ..|+++.+-+- ..++++|++|.+++|||..+..+++++.+|.+ .|..
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~ 232 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSF 232 (794)
T ss_pred ----cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceE
Confidence 6679999999999999999999 89999999764 47999999999999999999999999997755 6999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
++|+|.-..+++|+.||+++||+..+-+....+.-.-+
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle------------------------------------------ 270 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE------------------------------------------ 270 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc------------------------------------------
Confidence 99999999999999999999999887655444443333
Q ss_pred cccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCC
Q 001358 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 787 (1092)
Q Consensus 708 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1092)
++.+++..+.+..++.|..+|.+.+=
T Consensus 271 ----------------------------RvW~I~~~k~~~~i~vG~Deg~i~v~-------------------------- 296 (794)
T KOG0276|consen 271 ----------------------------RVWCIAAHKGDGKIAVGFDEGSVTVK-------------------------- 296 (794)
T ss_pred ----------------------------eEEEEeecCCCCeEEEeccCCcEEEE--------------------------
Confidence 34444444444445555555544430
Q ss_pred CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC--CeEEEE------EcCCceeeE----EecCCCCCeEEEEEcCCC
Q 001358 788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--GVISLY------IVMTFKTIL----TIMPPSPTATSLAFNPHD 855 (1092)
Q Consensus 788 ~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd--g~i~iw------d~~~~~~~~----~~~~~~~~i~~l~~s~~d 855 (1092)
-......+.+++.|+.+-+... -.+.+- ++..|+.+. .+....-....++-+| +
T Consensus 297 -------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-N 362 (794)
T KOG0276|consen 297 -------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-N 362 (794)
T ss_pred -------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-C
Confidence 0111122333444433332211 011111 223333221 1111111235678899 8
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001358 856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
|+++++++ ||.-.||..-..+ ..+.+.-....|++|.+..|.--.++.|+++ +..+. .+....
T Consensus 363 GrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke-----~ksi~~---- 425 (794)
T KOG0276|consen 363 GRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKE-----HKSIRP---- 425 (794)
T ss_pred CcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--eccee-----cccccc----
Confidence 98877655 8888888642211 1244556778999998888888888889988 33221 111111
Q ss_pred CCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001358 936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 936 ~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
-..+.+--.|.+|.+..++.+++||..+++.++.+-. ....+.|+.+|.+++.++.| +.++...
T Consensus 426 ---~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v----~~k~v~w~d~g~lVai~~d~-Sfyil~~ 489 (794)
T KOG0276|consen 426 ---DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV----TSKHVYWSDNGELVAIAGDD-SFYILKF 489 (794)
T ss_pred ---ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee----ccceeEEecCCCEEEEEecC-ceeEEEe
Confidence 1113333456777778899999999999999987432 35678999999988888765 4444443
No 30
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-34 Score=309.36 Aligned_cols=583 Identities=16% Similarity=0.230 Sum_probs=404.0
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCE
Q 001358 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
...+..|-.++|+|... ++.++-..|.|.+||..-+.++.. +.+|.++|..++|+|++.+
T Consensus 6 EskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qpl 65 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPL 65 (1202)
T ss_pred hcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCe
Confidence 34466899999999998 577778889999999999998875 7789999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEE
Q 001358 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1092)
+++|++|..|+||+..+.+++. ++.||-+.|..+.|++.-. +++|+|.|.+|+||++.+++++..+.||...|.|
T Consensus 66 FVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMc 140 (1202)
T KOG0292|consen 66 FVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMC 140 (1202)
T ss_pred EEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEe
Confidence 9999999999999999987666 7889999999999999877 8999999999999999999999999999999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001358 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1092)
..|+|+.| .++|+|-|.+|||||+...+....-.+ ++.-...+..+. .-++-...--....
T Consensus 141 AqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 141 AQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKHV 201 (1202)
T ss_pred eccCCccc--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeeee
Confidence 99988764 899999999999999976544332221 010001111110 00111111223456
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001358 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 650 (1092)
+.||. ..|+-++|+|.-..+++|++|..|++|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||
T Consensus 202 LEGHD---RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 202 LEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred ecccc---cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 78888 899999999999999999999999999987655444444456677899999999999999999999999999
Q ss_pred CCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCC-----CCCcccceeeccccccceeceeeccCcccee
Q 001358 651 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-----KEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1092)
Q Consensus 651 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 725 (1092)
+...+.++.++...+..+.++..|.....+.|-..|-+.|.-+. .-.++.+...- |..|+.+|+.+........
T Consensus 279 m~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~ 357 (1202)
T KOG0292|consen 279 MTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVAS 357 (1202)
T ss_pred cccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccccccceeEe
Confidence 99999999999999999999999999999999999888884331 12344444333 7788888887755555555
Q ss_pred cccCCccccccEEEEEEecCCcEEEEee--cCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCC
Q 001358 726 LLLPSKVKANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 803 (1092)
Q Consensus 726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~--~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 803 (1092)
+..+.. ...++.++.++|....++.++ .+|...++.++.......... .. . ...
T Consensus 358 lr~~g~-~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~------------~~-------~----k~t 413 (1202)
T KOG0292|consen 358 LRRPGT-LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGK------------DV-------K----KGT 413 (1202)
T ss_pred ccCCCc-ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCch------------hh-------h----cCC
Confidence 543332 235678899999776655553 346777777665421100000 00 0 111
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec
Q 001358 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 883 (1092)
....+-.+.++-.+..-++..+.+-++.. +..+.+... ..+..+-+.- .|.+|+. ....|.+||++..+.+..+.
T Consensus 414 G~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 414 GEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK 488 (1202)
T ss_pred CCceEEEEecceEEEEecCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe
Confidence 22223223332222222234444444432 222222211 2333444444 5555543 34579999999888777776
Q ss_pred cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEE
Q 001358 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE 963 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd 963 (1092)
...|.-+.||+|..++|--+. .+|.|.+.+-. .+....... .|.+-+|..+|-+|.+..+.- + |-
T Consensus 489 --~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL~------l~~sihEti----riksgawde~gVfiYtT~nHi-k-Ya 553 (1202)
T KOG0292|consen 489 --VSKVKYVVWSNDMSRVALLSK-HTITIADKKLE------LLCSIHETI----RIKSGAWDEDGVFIYTTLNHI-K-YA 553 (1202)
T ss_pred --cCceeEEEEcCccchhhhccc-ceEEEEecchh------heecchhee----EeeeceeccCceEEEEehhhh-h-hh
Confidence 467899999999988887765 45888876641 222222222 477888988888887643211 0 11
Q ss_pred cCCce--eeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001358 964 AEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 964 ~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~ 1011 (1092)
+.+|. .+++ + ..++.- +--.|..++.-..|+.++..+++.-+
T Consensus 554 l~~GD~GIikT-L---d~~iyi--tkv~gn~V~cl~rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 554 LENGDSGIIKT-L---DKPIYI--TKVKGNKVFCLNRDGEIECLTIDPTE 597 (1202)
T ss_pred hccCCcceEEe-c---ccceEE--EEeeCCEEEEEecCCCeEEEeechHH
Confidence 11111 1111 0 112221 22257777777788888888877643
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-36 Score=296.19 Aligned_cols=292 Identities=22% Similarity=0.337 Sum_probs=268.4
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
+..+.+.||...|+.+-|+|+-. ++++++.|++|++||..+|+.... +.||...|..++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence 56678899999999999999997 899999999999999999998765 8899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001358 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
+..|++||+++.|-.+++||.++. .++...+.+|...|.+++|-|.|. ++++++.|.+|+.|+..+|.++++|.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999988999999863 233346779999999999999998 8999999999999999999999999999
Q ss_pred CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecC---------------CCEEEEEec
Q 001358 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN---------------GRRLFSCGT 549 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d---------------g~~l~~~~~ 549 (1092)
...|..+.. ..||.++++++.|.++++|-+.+..+...+..|+.+|.+++|.|. +.++.+++.
T Consensus 235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999998887 668899999999999999999999999999999999999999773 246666665
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001358 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
|++|++||+.+|.++-++.+|. +.|..++|+|.|++|+++.+|+++++||+.+++++.++..|.+ .++++.
T Consensus 313 ----DktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lD 383 (406)
T KOG0295|consen 313 ----DKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLD 383 (406)
T ss_pred ----cceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEe
Confidence 7789999999999999999999 9999999999999999999999999999999999999997766 489999
Q ss_pred EccCCCEEEEEeCCCeEEEEEC
Q 001358 630 FNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
|+.+..++++|+-|.++++|..
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 9999999999999999999974
No 32
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.2e-32 Score=281.45 Aligned_cols=540 Identities=12% Similarity=0.153 Sum_probs=384.5
Q ss_pred CCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEE
Q 001358 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1092)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~ 401 (1092)
++.+...-++|+. -=..+-+-|.|..+...+ +.+.+++++...+.. +.+|+..|.|
T Consensus 54 l~LewvygYRG~d-cR~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc 109 (626)
T KOG2106|consen 54 LKLEWVYGYRGVD-CRNNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKC 109 (626)
T ss_pred ceeEEEEeeccee-eeceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEE
Confidence 3344555666764 333456778887433333 456777776533222 7789999999
Q ss_pred EEECCCCCEEEEEeCCC--------EEEEEEccCCCCccceEEecccccceeEEEeeCCCC--cEEEEEEeCCCcEEEEE
Q 001358 402 VVWSPDGSLLGVAYSKH--------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK--QISVITCGDDKTIKVWD 471 (1092)
Q Consensus 402 l~~spdg~~las~~~d~--------~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~--~l~l~s~~~d~~i~vwd 471 (1092)
++.+||.-.+|+|-..| .++|||..+-.. +..+......|.|++||+-.. .+..+--+.+..+.|||
T Consensus 110 ~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T---L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWd 186 (626)
T KOG2106|consen 110 MAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST---LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWD 186 (626)
T ss_pred EeecCCceeeccCcccccCCCcCCCeeeeccccccee---eeeeccccccceeeeecccCCCceEEEecCCCccccchhh
Confidence 99999999999874333 599999876443 335666677899999998533 22233345667899999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE---ecCC-CCceEEEEEecCCCEEEEE
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDAP-GLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~-~~~i~~~~~s~dg~~l~~~ 547 (1092)
+..+......+.....|....|+|... -++.....|.+.+|+++.+..... +..+ ..-|.+++|.++|..+ ++
T Consensus 187 Wqk~~~~~~vk~sne~v~~a~FHPtd~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi-Tg 263 (626)
T KOG2106|consen 187 WQKKAKLGPVKTSNEVVFLATFHPTDP--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI-TG 263 (626)
T ss_pred chhhhccCcceeccceEEEEEeccCCC--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEE-ee
Confidence 999998888888888899999988743 344555578999999987765442 2222 2579999999999866 33
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+.++.|.+|+..+.+..+....|. +.|.+++...+|. |++|+.|..|..|| ..-+.++..+.+.....+..
T Consensus 264 ----DS~G~i~Iw~~~~~~~~k~~~aH~---ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRt 334 (626)
T KOG2106|consen 264 ----DSGGNILIWSKGTNRISKQVHAHD---GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRT 334 (626)
T ss_pred ----cCCceEEEEeCCCceEEeEeeecC---CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeE
Confidence 447889999998888777776666 9999999999985 55699999999999 55555666655555555665
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
++=...+ +++|+..+.|.-=.+.++-.+
T Consensus 335 v~e~~~d--i~vGTtrN~iL~Gt~~~~f~~-------------------------------------------------- 362 (626)
T KOG2106|consen 335 VAEGKGD--ILVGTTRNFILQGTLENGFTL-------------------------------------------------- 362 (626)
T ss_pred EecCCCc--EEEeeccceEEEeeecCCceE--------------------------------------------------
Confidence 5533222 666666555443333322111
Q ss_pred cccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCC
Q 001358 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 787 (1092)
Q Consensus 708 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1092)
...+|......++..|+...+++++.|+.+++|+ ..+ .+|...
T Consensus 363 ---------------------~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-------------~~wt~~- 405 (626)
T KOG2106|consen 363 ---------------------TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-------------LEWTKI- 405 (626)
T ss_pred ---------------------EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc-------------eeEEEE-
Confidence 0123666777888888888899999999999987 111 112211
Q ss_pred CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001358 788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 866 (1092)
Q Consensus 788 ~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg 866 (1092)
-..+..|+.|+|.| .+|.|. .|...+.|.++...+..-.. ..++++++|+| +|.+||+|+.|+
T Consensus 406 -------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 406 -------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDN 469 (626)
T ss_pred -------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCC
Confidence 35678899999999 888887 69999999999665554444 88999999999 999999999999
Q ss_pred eEEEEEcCCce-eeEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeee---------ee---eecCCCC
Q 001358 867 TILIYNARSSE-VISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC---------RS---LQTPDGV 932 (1092)
Q Consensus 867 ~v~iwd~~~~~-~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~---------~~---~~~~~~~ 932 (1092)
.|+||.+.... ...+.. .|..+|+.+.||+|+++|.+.+.|-.|-.|.-..-+.... .+ .....+
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~- 548 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGG- 548 (626)
T ss_pred eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecc-
Confidence 99999987643 333322 2448999999999999999999999999994332111110 00 011111
Q ss_pred cCCCCCceEEEEecCCCEEEEEe-CCcEEEEEcCCce--eeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001358 933 MTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 933 ~~~~~~v~~l~~s~dg~~la~~~-d~~v~lwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
.....+..++-+...+++|++. .|+|++|...-.+ .....+.+|++-|++++|+.+...+++.+.|.+|..|++
T Consensus 549 -s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 549 -SDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred -cCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 1123567778888889999975 4899999876332 233346789999999999999999999889999999987
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=284.15 Aligned_cols=339 Identities=18% Similarity=0.230 Sum_probs=286.6
Q ss_pred EecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEE
Q 001358 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1092)
Q Consensus 436 ~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd 515 (1092)
++..|+..|.+++.+|+.+ +++||+.|....+|++.+|..+..+.+|...|+++.| +.+|.+|++|+.+|.|+||+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~F--shdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSF--SHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEE--ccCceEEEecCCCccEEEEE
Confidence 6889999999999999877 8999999999999999999999999999999999999 45789999999999999999
Q ss_pred cCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE
Q 001358 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1092)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1092)
..++.....+......+.-+.|+|.+..|++|+. ++.+.+|.+.++...+.+.||. .++++-.|.|+|+.+++
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT 207 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence 9999999988878888999999999999999876 6669999999988889999988 89999999999999999
Q ss_pred EeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCC
Q 001358 596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1092)
Q Consensus 596 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1092)
+..||+|++||..+++++..+....+ ....++.++..+..++.|..++.+.+-+..+++.+....+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~------------- 273 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG------------- 273 (399)
T ss_pred EecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence 99999999999999999999875553 3567899999999999999988887766555432211110
Q ss_pred cccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC
Q 001358 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 755 (1092)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 755 (1092)
.+..+.....
T Consensus 274 ---------------------------------------------------------------------~~~~l~~~~e- 283 (399)
T KOG0296|consen 274 ---------------------------------------------------------------------TVPELKPSQE- 283 (399)
T ss_pred ---------------------------------------------------------------------CCccccccch-
Confidence 0000000000
Q ss_pred CeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCce
Q 001358 756 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK 834 (1092)
Q Consensus 756 g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~ 834 (1092)
.....|.++.++..-.+.|+|+ ||+|.|||+.+.+
T Consensus 284 --------------------------------------------~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 284 --------------------------------------------ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred --------------------------------------------hhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 0122334445555666778888 8999999998877
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001358 835 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 835 ~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd 914 (1092)
....+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.||..+|.+++++|++++++|+|.|++.+|++
T Consensus 320 ~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 320 LRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred hheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 665554 888899999987 56899999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 001358 915 VD 916 (1092)
Q Consensus 915 ~~ 916 (1092)
+.
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 75
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5e-35 Score=287.91 Aligned_cols=335 Identities=15% Similarity=0.190 Sum_probs=290.4
Q ss_pred cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
...+.++..|++.|.+++.+|+.+ ++|+|+.|....||+..+|+.... +.+|+..|+++.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~ 113 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCS 113 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEE
Confidence 345688999999999999999776 899999999999999999997665 889999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001358 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 483 (1092)
||.||.+||+|+.+|.|+||+..++.... .+......|.-+.|+|-+. +|+.|+.||.+-+|.+.++...+.+.|
T Consensus 114 FshdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 114 FSHDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred EccCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecC
Confidence 99999999999999999999999987554 4545667789999999988 899999999999999999888999999
Q ss_pred CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-CCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
|..++++=.|.| +|+.++++..||+|++|+..+..+...+... .....++.++..+..++.|.. ++.+++-+.
T Consensus 189 h~~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~ 262 (399)
T KOG0296|consen 189 HNSPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNN 262 (399)
T ss_pred CCCCcccccccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEcc
Confidence 999999999955 6899999999999999999999988877643 345678889999999988865 566888888
Q ss_pred CCCeEEEEEee--------ccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001358 563 SEGAIKRTYQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 563 ~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
.+|+.+....+ +......|.++.++..-+..++|+-||+|.|||+....+....... ..|..+.|-+ .
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he---~~V~~l~w~~-t 338 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHE---DGVTKLKWLN-T 338 (399)
T ss_pred ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCC---CceEEEEEcC-c
Confidence 88888777663 3322234555666666778899999999999999987777766544 3489999998 8
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceec
Q 001358 635 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~ 714 (1092)
.+|++++.+|.|+.||.++++......+|...|.+++++ |+++++++++.|++.++|+
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred chheeeccCceEEeeeccccceEEEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEe
Confidence 899999999999999999999999999999999999996 7899999999999999987
Q ss_pred e
Q 001358 715 P 715 (1092)
Q Consensus 715 ~ 715 (1092)
.
T Consensus 397 v 397 (399)
T KOG0296|consen 397 V 397 (399)
T ss_pred c
Confidence 5
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-35 Score=289.99 Aligned_cols=300 Identities=18% Similarity=0.249 Sum_probs=269.9
Q ss_pred ccCCCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCc
Q 001358 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1092)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~ 398 (1092)
-+..|-.+.+.+.||-+.|.|+++.|-.+ ++++|+.|++|+|||+.+|+...+ +.||-..
T Consensus 136 eWHapwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~ 195 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIET 195 (460)
T ss_pred cccCcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhhe
Confidence 35566778899999999999999999987 799999999999999999998876 8899999
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
|..+++|+--.||.+++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|++|+.|.+++|||+++...+
T Consensus 196 vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V 270 (460)
T KOG0285|consen 196 VRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASV 270 (460)
T ss_pred eeeeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceE
Confidence 9999999999999999999999999999998887 6779999999999999988 8999999999999999999999
Q ss_pred EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
..+.||..+|.++.+.+. ...+++|+.|++|++||+..++....+..|...+.+++.+|....+++++.+ .+.
T Consensus 271 ~~l~GH~~~V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----nik 343 (460)
T KOG0285|consen 271 HVLSGHTNPVASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NIK 343 (460)
T ss_pred EEecCCCCcceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----cce
Confidence 999999999999988654 3579999999999999999999999999999999999999999999998753 499
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe---CCC---CCCCCceEEEcc
Q 001358 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGG---GLPENPRICFNK 632 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s~ 632 (1092)
.|++..|..+..+.+|. ..+++++.+.|+ ++++|+++|.+.+||.++|-..+... .++ ....|.+.+|..
T Consensus 344 ~w~~p~g~f~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk 419 (460)
T KOG0285|consen 344 QWKLPEGEFLQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK 419 (460)
T ss_pred eccCCccchhhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc
Confidence 99999999999999888 889999998875 88999999999999999986655442 222 224588999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCC
Q 001358 633 NGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 633 ~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.|..|++|..|.+|++|.-.+.
T Consensus 420 tg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 420 TGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred cCceEEeccCCcceEEEecccc
Confidence 9999999999999999986643
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4e-34 Score=266.48 Aligned_cols=295 Identities=17% Similarity=0.255 Sum_probs=252.0
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeecccc
Q 001358 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQ 577 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~ 577 (1092)
-+|++++.|.+||+|...++.+..++......|..+.+.||++.|++++ ...|++||+++++ .+.++.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~-- 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT-- 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC--
Confidence 4899999999999999999999999999999999999999999999987 4459999999875 588999988
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCee
Q 001358 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1092)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 657 (1092)
..|.++.|..+|+++++||+||+++|||++...+.+.+... ..|+++..+|+...|+++..+|.|++||+.+....
T Consensus 84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 89999999999999999999999999999996666666543 56999999999999999999999999999875332
Q ss_pred eecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccE
Q 001358 658 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 737 (1092)
Q Consensus 658 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i 737 (1092)
..+- |. ....|
T Consensus 160 ~~li-------------------------------------------------------------------Pe--~~~~i 170 (311)
T KOG0315|consen 160 HELI-------------------------------------------------------------------PE--DDTSI 170 (311)
T ss_pred cccC-------------------------------------------------------------------CC--CCcce
Confidence 2211 11 33568
Q ss_pred EEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEE
Q 001358 738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL 817 (1092)
Q Consensus 738 ~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l 817 (1092)
.++++.|||..++++...|..++|++...... ... .....+ +.|...+..+.+|||+++|
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-----------s~l-------~P~~k~--~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-----------SEL-------EPVHKF--QAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------ccc-------eEhhhe--ecccceEEEEEECCCCcEE
Confidence 89999999999999999999999998653210 000 000111 2489999999999999999
Q ss_pred EEEe-CCeEEEEEcCCc-eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEc
Q 001358 818 FSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 895 (1092)
Q Consensus 818 ~~~s-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 895 (1092)
|+++ |.+++||+.++. +....+.+|...+..++||. |++||++|+.|+.+++|++..++.+....+|..+..|++..
T Consensus 231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9997 899999999988 67778899999999999999 99999999999999999999999999999999988888764
No 37
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=266.92 Aligned_cols=292 Identities=22% Similarity=0.338 Sum_probs=241.2
Q ss_pred eeEecccCCCCceEEeecCC-CceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 326 VAQTLIEGSSSPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spd-g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
..+.+++|++.|+.+||+|- |. +||+|+.|+.|+||+...+.-... +..+-.+|+..|.++||
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence 45889999999999999999 86 899999999999999986443221 22234579999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC---ceeEEE
Q 001358 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSF 481 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~ 481 (1092)
+|.|++||++|.|.++.||.-..++ .....++.||...|.|++||++|. +|++|+.|++|-||.+..+ +++..+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 9999999999999999999988654 455668999999999999999999 8999999999999998754 567888
Q ss_pred ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC---CCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
+.|...|..+.|+|+. .+|++++.|.+|++|+-.. -.+..++.++...|.+++|++.|..|++++. +++++
T Consensus 147 ~~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 9999999999998876 4999999999999997663 2357788999999999999999999999975 77799
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------eEEEEeCCCCCCCCceEEEcc
Q 001358 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
+|-..+. +.+. +...++.+.|. ...|++++.|+.|++|.-...- ++... .+.+...|+++.|+|
T Consensus 221 Iw~~~~~-----~~~~--~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 221 IWRLYTD-----LSGM--HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNP 290 (312)
T ss_pred eeeeccC-----cchh--cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcC
Confidence 9975422 2221 24788999998 4689999999999999765421 11111 123345799999999
Q ss_pred C-CCEEEEEeCCCeEEEEECC
Q 001358 633 N-GTLLAVIANENRIKILETP 652 (1092)
Q Consensus 633 ~-~~~l~~~~~dg~i~iw~~~ 652 (1092)
. .++|+++++||.+++|.+.
T Consensus 291 ~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 291 KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCceeecCCCceEEEEEec
Confidence 4 7899999999999999864
No 38
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-32 Score=294.86 Aligned_cols=499 Identities=16% Similarity=0.190 Sum_probs=356.0
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+...+..|..++|+|...+++++-..|.|++||..-+.++. .+.+|.++|..++|+|++. ++||||.|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 34466789999999999999999999999999999998777 6889999999999999999 899999999999999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
.++.+++.++.||.+.|..+.|++. -.+++|+|.|.+|+||++.+.+++..+++|.+-|.|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 9999999999999999999999764 469999999999999999999999999999999999999999999999987
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE---EEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceE
Q 001358 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI---LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1092)
|.+|++||+..-+....-.+.- ...+ .+... +-|+.|- -....+++| ...|+-+
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~--e~~~-------~~~~~~~dLfg~~Da----------VVK~VLEGH--DRGVNwa 212 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSL--EDQM-------RGQQGNSDLFGQTDA----------VVKHVLEGH--DRGVNWA 212 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCc--hhhh-------hccccchhhcCCcCe----------eeeeeeccc--ccccceE
Confidence 5579999986543322111100 0011 11111 1122222 122344444 4579999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCC--eeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecc
Q 001358 629 CFNKNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1092)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 706 (1092)
+|+|.-.++++|++|..|++|.+...+ .+.+.++|.+.|.++.|+ |...++++.+.
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh----------------------p~q~lIlSnsE 270 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH----------------------PHQDLILSNSE 270 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec----------------------CccceeEecCC
Confidence 999999999999999999999988664 456789999999999997 56788999999
Q ss_pred ccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCC
Q 001358 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 786 (1092)
Q Consensus 707 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1092)
|+++|+||+......+++.- ..++...++..|..+.++++... -+.+|.++.
T Consensus 271 DksirVwDm~kRt~v~tfrr------endRFW~laahP~lNLfAAgHDs-Gm~VFkleR--------------------- 322 (1202)
T KOG0292|consen 271 DKSIRVWDMTKRTSVQTFRR------ENDRFWILAAHPELNLFAAGHDS-GMIVFKLER--------------------- 322 (1202)
T ss_pred CccEEEEecccccceeeeec------cCCeEEEEEecCCcceeeeecCC-ceEEEEEcc---------------------
Confidence 99999999987666655532 56778899999999965555544 455555432
Q ss_pred CCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee--eEEecCC---CCCeEEEEEcCCCCCEEEE
Q 001358 787 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIMPP---SPTATSLAFNPHDNNVIAI 861 (1092)
Q Consensus 787 ~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~--~~~~~~~---~~~i~~l~~s~~d~~~las 861 (1092)
+.+ +.++ ++..|....+..|+-+|+.+.+. +..++.. ..+..++.++|..+..|++
T Consensus 323 ---------------Erp--a~~v--~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlic 383 (1202)
T KOG0292|consen 323 ---------------ERP--AYAV--NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLIC 383 (1202)
T ss_pred ---------------cCc--eEEE--cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEE
Confidence 222 2233 34445555689999999987543 3344433 3678999999955555555
Q ss_pred EeCC-CeEEEEEcCCceeeEeec---c-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001358 862 GMDD-STILIYNARSSEVISKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1092)
Q Consensus 862 g~~d-g~v~iwd~~~~~~~~~l~---~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1092)
...| |...++.+..... .... . ......++-.. .+++.+---.+..+.+-++.....+ .+..+.
T Consensus 384 s~~~n~~y~L~~ipk~~~-~~~~~~~~~k~tG~~a~fva-rNrfavl~k~~~~v~ik~l~N~vtk---kl~~~~------ 452 (1202)
T KOG0292|consen 384 SNLDNGEYELVQIPKDSD-GVSDGKDVKKGTGEGALFVA-RNRFAVLDKSNEQVVIKNLKNKVTK---KLLLPE------ 452 (1202)
T ss_pred eccCCCeEEEEEecCccc-ccCCchhhhcCCCCceEEEE-ecceEEEEecCcceEEecccchhhh---cccCcc------
Confidence 4433 4555665543211 0000 0 11122222222 2233332223555666666653211 122221
Q ss_pred CCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358 937 PSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 937 ~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
.+..+-+..+|.+|+. +...|.+||++....+.++. -..|..++||+|..+++--+. .+|.+.+..
T Consensus 453 -~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~---~s~vkyvvws~dm~~vAll~K-h~i~i~~kk 518 (1202)
T KOG0292|consen 453 -STDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK---VSKVKYVVWSNDMSRVALLSK-HTITIADKK 518 (1202)
T ss_pred -cccceeeccCccEEEE-cCCeEEEEEeecceEEEEEe---cCceeEEEEcCccchhhhccc-ceEEEEecc
Confidence 2445666667766554 45679999999888877754 457889999999987776553 466666644
No 39
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-33 Score=287.08 Aligned_cols=279 Identities=19% Similarity=0.300 Sum_probs=252.5
Q ss_pred CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|++++|+.+|. +||+|+.||.++||+...+ ++.+ +..|+++|.++.|+.+|.||+++
T Consensus 236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~-l~~t-------------------l~~HkgPI~slKWnk~G~yilS~ 294 (524)
T KOG0273|consen 236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKDGN-LIST-------------------LGQHKGPIFSLKWNKKGTYILSG 294 (524)
T ss_pred CCcceEEecCCCC-eEEEeecCcEEEEEecCch-hhhh-------------------hhccCCceEEEEEcCCCCEEEec
Confidence 4899999999998 8999999999999997654 4433 67799999999999999999999
Q ss_pred eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeec
Q 001358 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 494 (1092)
+.|+++.+||..+|+..+ .+.-|..+-..+.|-.+.. +++++.|+.|+|+.+...+++.++.+|.++|.++.|.
T Consensus 295 ~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred cCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence 999999999999987655 4556888777889987776 9999999999999999999999999999999999995
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCC---------CEEEEEecCCCCceeEEEEeCCCC
Q 001358 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------RRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg---------~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
+ .+.+|++++.|+++++|..........+..|...|..+.|+|+| ..+++++. +++|++||...+
T Consensus 369 ~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~g 442 (524)
T KOG0273|consen 369 P--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESG 442 (524)
T ss_pred C--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCC
Confidence 5 56899999999999999999888889999999999999999965 45777765 778999999999
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001358 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1092)
.++..|..|. .+|++++|+|++.++++|+.||.|.+|+..+++..+.....+ .|..++|+.+|..+.++..|+.
T Consensus 443 v~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 443 VPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred ceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999988 999999999999999999999999999999999999987654 4899999999999999999999
Q ss_pred EEEEECC
Q 001358 646 IKILETP 652 (1092)
Q Consensus 646 i~iw~~~ 652 (1092)
+.+.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998864
No 40
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=4e-31 Score=270.28 Aligned_cols=524 Identities=13% Similarity=0.180 Sum_probs=374.7
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC--------cEEEEEC
Q 001358 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------TIKVWDA 472 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--------~i~vwd~ 472 (1092)
.+-+-|.|..+.... +.+.+++++...+. .+.+|...|.|++.+||.- .+++|-.-| .+++||.
T Consensus 70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA--AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEec--cEEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 356778888776543 34566777653211 3669999999999999865 566554333 5999999
Q ss_pred CCCceeEEEecCCcceEEEeecccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
.+-..++.+......|.+++|++...|.++.... .+..+.+||+..+.........+..+....|+|.+..++....
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 9988899888888899999999887777766653 4456899999988877777777778889999997665544432
Q ss_pred CCCceeEEEEeCCCCeEEEE---EeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358 551 KEGESFLVEWNESEGAIKRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
.+.++.|+.+.+.+.++ +..+. ...|.+++|.++|. +++|..+|.|.||+..+.+..+....| ...|.+
T Consensus 221 ---k~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~~ 292 (626)
T KOG2106|consen 221 ---KGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAH--DGGVFS 292 (626)
T ss_pred ---CceEEEEEccCCceEEEeecccccc--ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeec--CCceEE
Confidence 67799999998877654 44444 46799999999874 889999999999999887777766644 446899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
++.-.+|.+|- |+.|..|..||-. -+.++...
T Consensus 293 L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~e---------------------------------------------- 324 (626)
T KOG2106|consen 293 LCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETE---------------------------------------------- 324 (626)
T ss_pred EEEecCccEee-cCccceEEecccc-cccccccc----------------------------------------------
Confidence 99999997666 9999999999922 11111111
Q ss_pred cccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCC
Q 001358 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 787 (1092)
Q Consensus 708 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1092)
+|. ..+.|..++-...+ ++.+...+.|..=.++.
T Consensus 325 --------------------lPe--~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~---------------------- 358 (626)
T KOG2106|consen 325 --------------------LPE--QFGPIRTVAEGKGD--ILVGTTRNFILQGTLEN---------------------- 358 (626)
T ss_pred --------------------Cch--hcCCeeEEecCCCc--EEEeeccceEEEeeecC----------------------
Confidence 111 22233333222111 44444444443322111
Q ss_pred CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001358 788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 866 (1092)
Q Consensus 788 ~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg 866 (1092)
+..+. ..+|......++..|+...+++++ |+.+++|+ ..+...+.. ...++.|+.|+| .+ .+|.|+..|
T Consensus 359 ~f~~~-----v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G 428 (626)
T KOG2106|consen 359 GFTLT-----VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATG 428 (626)
T ss_pred CceEE-----EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccc
Confidence 11111 124888889999999998888887 89999999 344443332 456889999999 77 999999999
Q ss_pred eEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEec
Q 001358 867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 946 (1092)
Q Consensus 867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 946 (1092)
...+.|.++...+..-.. ..+++++.|+|+|.+||.|+.|+.|+||.++.+..... .+....+ ..|+.+.||+
T Consensus 429 ~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~-r~~k~~g-----s~ithLDwS~ 501 (626)
T KOG2106|consen 429 RWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS-RVGKCSG-----SPITHLDWSS 501 (626)
T ss_pred eEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE-EeeeecC-----ceeEEeeecC
Confidence 999999999665555444 88999999999999999999999999999987553322 2222233 3699999999
Q ss_pred CCCEEEE-EeCCcEEEEEcCCceeeee-----------------eccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358 947 DQTRFLL-VHETHLAIYEAEELTCLKQ-----------------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 947 dg~~la~-~~d~~v~lwd~~~~~~~~~-----------------~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
|+++|.+ +.|-.|..|.....+.+.. ....|...|..++-|.+.+++++|...|.|++|..+
T Consensus 502 Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yP 581 (626)
T KOG2106|consen 502 DSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYP 581 (626)
T ss_pred CCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccc
Confidence 9999999 7788899994332221111 122357777888888899999999999999999887
Q ss_pred CCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001358 1009 NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
--...+.+ .....|++.|. +++|.-.| ..|++.+.|..|..|++
T Consensus 582 c~s~rA~~-----he~~ghs~~vt--~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 582 CSSPRAPS-----HEYGGHSSHVT--NVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred cCCCcccc-----eeeccccceeE--EEEEeeCC-ceEEecCCCceEEEEEe
Confidence 55444222 22223567777 45565434 56666669999999987
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.3e-33 Score=269.12 Aligned_cols=290 Identities=18% Similarity=0.234 Sum_probs=252.1
Q ss_pred EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
..|.||+++|..+.|+|+|. ++|+|+.|..|.+|++.....-. ..+++|.+.|..+.|.+|
T Consensus 41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRD 101 (338)
T ss_pred hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccC
Confidence 55789999999999999998 79999999999999976543221 127799999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
+..|++++.|.+|+.||+++|+..+ .+++|..-|+++.-+.-|.+ ++.|++.|+++++||+++..+++++. ...+
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq 176 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ 176 (338)
T ss_pred CCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-ccee
Confidence 9999999999999999999998776 67899999999996656665 78899999999999999999888875 4567
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC----
Q 001358 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES---- 563 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~---- 563 (1092)
+++++|.. .+..+++|+-|+.|++||++.......+.+|..+|+.+..+++|.++.+.+. +..+++||.+
T Consensus 177 ltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 177 LTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAP 250 (338)
T ss_pred EEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCC
Confidence 88888854 5568999999999999999999999999999999999999999999998875 7789999987
Q ss_pred CCeEEEEEeecccc-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358 564 EGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
...++..+.++... ......++|+|++..+-+|+.|..+++||......+..+++|. ..|+++.|+|....+.+++.
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCCcEEEEecc
Confidence 34557888887511 1345678999999999999999999999999988888888664 46999999999999999999
Q ss_pred CCeEEEE
Q 001358 643 ENRIKIL 649 (1092)
Q Consensus 643 dg~i~iw 649 (1092)
|.+|.+=
T Consensus 329 dk~i~lg 335 (338)
T KOG0265|consen 329 DKTIYLG 335 (338)
T ss_pred CceeEee
Confidence 9998874
No 42
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.4e-30 Score=272.40 Aligned_cols=550 Identities=12% Similarity=0.115 Sum_probs=387.5
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccc-cceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC
Q 001358 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
...|.++|||.+.+.||.+-.+|.|.||++..+-.... .+.++. ..|.+++|++.++ |.+.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 46899999999999999999999999999998654433 455554 5799999997665 89999999999999999
Q ss_pred CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEEEEecCCCEEEEEecCCC
Q 001358 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
++.++.+....+.|.+++.++.. ..++.|+.||.+..++......... +....+.+.+++|+|++..++.|+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--- 174 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--- 174 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence 99999999999999999997755 6899999999777777666555443 3344578999999999999999986
Q ss_pred CceeEEEEeCCCCeEEEEEeec----cc-cCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358 553 GESFLVEWNESEGAIKRTYQGL----QL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~----~~-~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
++.|++||..++..+...... .. ..--|+++.|-.+ ..+++|...|+|.+||...+.+++....+.. .|.+
T Consensus 175 -Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~ 250 (691)
T KOG2048|consen 175 -DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLA 250 (691)
T ss_pred -CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--ceeE
Confidence 778999999999877632211 10 1234778888765 5799999999999999999999998887744 6999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
++..+++.++++++.|+.|.-|...++..-
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------------------------------------------- 280 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------------------------------------------- 280 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccc--------------------------------------------------
Confidence 999999999999999999988877654210
Q ss_pred cccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCC
Q 001358 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 787 (1092)
Q Consensus 708 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1092)
|-.. .+...|...|.++++.++ .+++++.|..+.+-.....+. .+
T Consensus 281 -----wv~~-----------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~--- 325 (691)
T KOG2048|consen 281 -----WVIN-----------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MD--- 325 (691)
T ss_pred -----eeee-----------ccccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hh---
Confidence 1100 011237778888888877 688888888777632211000 00
Q ss_pred CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce---------eeEEecCCCCCeEEEEEcCCCCCE
Q 001358 788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---------TILTIMPPSPTATSLAFNPHDNNV 858 (1092)
Q Consensus 788 ~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~---------~~~~~~~~~~~i~~l~~s~~d~~~ 858 (1092)
. .+.... ... .-+...|..++++.-....+.+|.+.+.- ..+-.......|.+.+.|| +|++
T Consensus 326 h--~~~~~~----p~~--~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~ 396 (691)
T KOG2048|consen 326 H--RQKNLF----PAS--DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNL 396 (691)
T ss_pred h--hccccc----ccc--ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCE
Confidence 0 000000 001 12345566666776677888889876541 1222233456899999999 9999
Q ss_pred EEEEeCCCeEEEEEcCCceee-----EeeccccCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCC
Q 001358 859 IAIGMDDSTILIYNARSSEVI-----SKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGV 932 (1092)
Q Consensus 859 lasg~~dg~v~iwd~~~~~~~-----~~l~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 932 (1092)
++.+. -..++||.+.....+ .....-.-....+.|+-|++.++.++ .+..+.+.++++...+....++.. ..
T Consensus 397 Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~ 474 (691)
T KOG2048|consen 397 IAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AK 474 (691)
T ss_pred EEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cC
Confidence 99776 446888888753222 12222344677899999999888888 777888888887654433333222 12
Q ss_pred cCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEec-CCCEEEEEeCCCcEEEEECCCC
Q 001358 933 MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 933 ~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~s~Dg~i~vwd~~~~ 1010 (1092)
. +.|..++.||||++||+ +..+.|.+|++++++.-... ..-...|+.++|+| +-..|+.+..++.+.-||++..
T Consensus 475 ~---~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~-~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 475 C---PSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLK-VRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred C---CcceeEEEcCCCCEEEEEeccceEEEEEcccceeecch-hccCcceeeeeccccccCcEEEEecCCeEEEEecchh
Confidence 2 36999999999999999 78899999999988755432 22357899999995 5567888889999999999554
Q ss_pred ceEEeeccc--cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358 1011 EVQCRILST--AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1011 ~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.+ .++... ..+|..+..-.-....+.|+|.+ ...+...+.+-+++.|+.
T Consensus 551 ~l-~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n-~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 551 NL-TRWSKNNTRNLPKEPKTLIPGIPGISFDPKN-SSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred hh-hhhhhccccccccChhhcCCCCceEEeCCCC-ccEEEEEcCcEEEEEecC
Confidence 42 222100 11111110111112346677753 444444556667777764
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-33 Score=259.61 Aligned_cols=292 Identities=15% Similarity=0.211 Sum_probs=253.2
Q ss_pred CCCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEE
Q 001358 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1092)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~ 400 (1092)
.+|...+++|..|.+.|.++.|+-||+| ..+++.|.+|++|+...|.++++ +.+|...|.
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVl 63 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVL 63 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceee
Confidence 4577778899999999999999999995 67777899999999999999987 779999999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC--Ccee
Q 001358 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--GSRT 478 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~--~~~~ 478 (1092)
.++.+.|...+++|+.|..|.+||+++|+.++ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||-++ -+++
T Consensus 64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPI 138 (307)
T ss_pred eccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCcc
Confidence 99999999999999999999999999998777 7899999999999999999 899999999999999875 4678
Q ss_pred EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
+.+......|.++.+ .+..+++|+.||++|.||++.+.....+ .+.+|++++|++|++..++++. ++.++
T Consensus 139 Qildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlr 208 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLR 208 (307)
T ss_pred chhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceee
Confidence 888888899999987 3468999999999999999887654443 4568999999999999998876 67799
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001358 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
+.|-.+|+++..+.||...... ..++++.....+++|++||.|++||+.+...+..+..+.. ..+..++++|.-..++
T Consensus 209 LlDk~tGklL~sYkGhkn~eyk-ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 209 LLDKETGKLLKSYKGHKNMEYK-LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFI 286 (307)
T ss_pred ecccchhHHHHHhcccccceee-eeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCcccee
Confidence 9999999999999999833333 3456777778999999999999999999999999887754 4578999999877777
Q ss_pred EEeCCCeEEEEE
Q 001358 639 VIANENRIKILE 650 (1092)
Q Consensus 639 ~~~~dg~i~iw~ 650 (1092)
++... .+..|.
T Consensus 287 ~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 287 TATGH-GDLFWY 297 (307)
T ss_pred EecCC-ceecee
Confidence 77654 445554
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.9e-33 Score=267.59 Aligned_cols=286 Identities=18% Similarity=0.296 Sum_probs=249.5
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|.+.|..+.|.+|+. .+++++.|++|+.||
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGWD 118 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEEe
Confidence 78999999999999999999999999999999976543 33447889999999999999999 899999999999999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+++|++++.+++|...|+++... ..+..++.+++.||++++||++......++. ....++++.|..++..+++++-
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI-- 194 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI-- 194 (338)
T ss_pred cccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc--
Confidence 99999999999999999999843 2344688899999999999999877766654 3447899999999999999987
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceEEEEeCCCCCCC--C
Q 001358 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPE--N 625 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~--v 625 (1092)
++.|.+||++.+.....+.||. ++|+.+..+|+|.++++-+.|.++++||++.. .++..+..+.+.-. .
T Consensus 195 --dn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 --DNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred --cCceeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 4559999999999999999999 99999999999999999999999999998753 34666665544322 4
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeec
Q 001358 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1092)
..++|+|+++.+.+|+.|..+++||......+..+.+|...|.++.|.| ....+.+++
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp----------------------~e~iils~~ 327 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP----------------------TEPIILSCS 327 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC----------------------CCcEEEEec
Confidence 5789999999999999999999999999999999999999999999985 455667777
Q ss_pred cccccce
Q 001358 706 AENKSEV 712 (1092)
Q Consensus 706 ~d~~i~~ 712 (1092)
.|.+|.+
T Consensus 328 sdk~i~l 334 (338)
T KOG0265|consen 328 SDKTIYL 334 (338)
T ss_pred cCceeEe
Confidence 7776654
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.8e-33 Score=313.60 Aligned_cols=294 Identities=21% Similarity=0.350 Sum_probs=257.0
Q ss_pred eEecccC-CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCC--ceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 327 AQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 327 ~~~l~~h-~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.+.+.+| ...|.|+.|||||+ .+++++.|+.+++|+..+++ .... +.+|...|..++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~ 210 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA 210 (456)
T ss_pred eeeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence 5666665 77999999999999 59999999999999997776 3432 578999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEc-cCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001358 404 WSPDGSLLGVAYSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~-~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
|+|||+++++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.
T Consensus 211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence 9999999999999999999999 4444444 7889999999999999997 89999999999999999999999999
Q ss_pred cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCC--ceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~--~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
+|.+.|++++| .+++.+|++++.||.|++||+.++. ....+..+.. +++.+.|+|++.++++++. ++.+.
T Consensus 286 ~hs~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~ 359 (456)
T KOG0266|consen 286 GHSDGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK 359 (456)
T ss_pred ccCCceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence 99999999999 5577899999999999999999988 3455554444 5999999999999999986 66799
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001358 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
+||+..+.....+.+|......+.+...++.+.++++|+.|+.|++||..++..+..+..+. ...+..++++|..++++
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA 438 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence 99999999999999998322245566668899999999999999999999999999988775 45688999999999999
Q ss_pred EEe--CCCeEEEEECC
Q 001358 639 VIA--NENRIKILETP 652 (1092)
Q Consensus 639 ~~~--~dg~i~iw~~~ 652 (1092)
+++ .|+.+++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 998 68999999754
No 46
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-33 Score=276.23 Aligned_cols=285 Identities=20% Similarity=0.286 Sum_probs=264.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|..+|+.+-|.|+-...++++.|++|++||..+|+..+ .++||...|..++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 77899999999999999999999999999999999998755 7899999999999999999 899999999999999
Q ss_pred CCC-CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358 472 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 472 ~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
.++ .++++.+.+|...|.+++|.|.+ .++++++.|.+|+.|+++++-++.++.+|...|..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 67888999999999999998764 69999999999999999999999999999999999999999999999976
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC---------------CCEEEEEeCCCeEEEEECCCCceEEE
Q 001358 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT 615 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1092)
+.+|++|-..++++...+..|+ .+|.+++|.|. ++++.+++.|++|++||+.++.++.+
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 6679999999999999999998 89999999773 25889999999999999999999999
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCC
Q 001358 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1092)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (1092)
+.+|. ..|..++|+|.|++|+++.+|+++++||+.+.++...+..|..-++++.|.
T Consensus 330 L~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh---------------------- 385 (406)
T KOG0295|consen 330 LVGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH---------------------- 385 (406)
T ss_pred Eeccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC----------------------
Confidence 98775 479999999999999999999999999999999999999999999999886
Q ss_pred CCcccceeeccccccceec
Q 001358 696 EDVKPEISVEAENKSEVEK 714 (1092)
Q Consensus 696 ~d~~~l~s~~~d~~i~~w~ 714 (1092)
.+..++++|+-|.++++|.
T Consensus 386 ~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCCceEEeccccceeeeee
Confidence 3445889999999999996
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=269.15 Aligned_cols=294 Identities=14% Similarity=0.233 Sum_probs=258.2
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
++.+|.+.|.|+++-|..+++++|+.|++|+|||+.+|+... ++.||-..|..+++|+-.. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 477899999999999999999999999999999999996544 7899999999999999888 89999999999999
Q ss_pred ECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
|++..+.++.+.||-..|.+++.+|.- ..|++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++|+.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999998765 58999999999999999999999999999999999999998889999976
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
|.+|++||+..|+...++..|. ..|.+++.+|....+++++.|. |+-|++..|..+..+..+. ..+++++.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~--~iintl~~ 368 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHN--AIINTLSV 368 (460)
T ss_pred ---CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccccc--ceeeeeee
Confidence 7789999999999999998888 8999999999998888888765 8999999999999877664 45888888
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccccc
Q 001358 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1092)
Q Consensus 631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 710 (1092)
+.|+ ++++|+++|.+..||.+++..++.......+ |+
T Consensus 369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-------------------------------------GS----- 405 (460)
T KOG0285|consen 369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-------------------------------------GS----- 405 (460)
T ss_pred ccCc-eEEEcCCceEEEEEecCcCcccccccccccC-------------------------------------Cc-----
Confidence 8776 7889999999999999988665544211000 00
Q ss_pred ceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeec
Q 001358 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 764 (1092)
Q Consensus 711 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~ 764 (1092)
......|.+.+|...|.+|+++..|..|++|.-+
T Consensus 406 --------------------l~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 406 --------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred --------------------cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 0134568888999999999999999999999743
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.9e-34 Score=282.70 Aligned_cols=286 Identities=21% Similarity=0.310 Sum_probs=249.1
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCE
Q 001358 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
..-+..|..|.|.|+|++ |++|+..|.+.+|+..+- +|+ .++..|..+|.++.||++|.+
T Consensus 93 NKvkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~f------nFE-------------tilQaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSF------NFE-------------TILQAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred cccccceeeEEEcCCCce-eEeecccccEEEecCcee------eHH-------------HHhhhhcccceeEEEccCCCE
Confidence 334568999999999996 789999999999997432 111 236789999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCCCccceEEecc-cccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceE
Q 001358 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~l~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1092)
+++|+.+|.|++|+..-.... .+.+ |...|++++|||+.. .+++|+.||+|+|||....+.-..+.||.-.|.
T Consensus 153 miSgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK 226 (464)
T ss_pred EEEcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence 999999999999998764322 2334 558999999999888 799999999999999999988888999999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001358 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1092)
++.|+|.. .+|++++.|..|++||.+++.++.++..|...|..+.|++++++|++++. |..++++|+++.+.+.
T Consensus 227 svdWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~ 300 (464)
T KOG0284|consen 227 SVDWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELF 300 (464)
T ss_pred eeccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHH
Confidence 99998865 59999999999999999999999999999999999999999999999986 6679999999999999
Q ss_pred EEeeccccCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001358 570 TYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1092)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1092)
++++|. ..+.++.|+|-.. .|.+|+.||.|..|.+...+++..+.. .+...|.+++|+|=|..|++|+.|.++++
T Consensus 301 ~~r~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 301 TYRGHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRF 376 (464)
T ss_pred Hhhcch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceee
Confidence 999998 8999999999754 556689999999999986666655543 34467999999999999999999999999
Q ss_pred EECC
Q 001358 649 LETP 652 (1092)
Q Consensus 649 w~~~ 652 (1092)
|...
T Consensus 377 w~r~ 380 (464)
T KOG0284|consen 377 WTRN 380 (464)
T ss_pred eccC
Confidence 9754
No 49
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-33 Score=276.87 Aligned_cols=292 Identities=16% Similarity=0.200 Sum_probs=251.2
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
++..|.+.|.-+.||++|+|||+++.|.+..||++.....++...++.+|..+|..+.||||.+ +|++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 3778999999999999999999999999999999987776777778999999999999999999 79999999999999
Q ss_pred ECCCCceeEEEe-cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CCCceEEEEEecCCCEEEEEe
Q 001358 471 DAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 471 d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
|+.+|.+.+.+. +|...+.+++|.| ||..+++|+.|+++..||++.... ..+.+ ....|.+++.++||+++++..
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEEe
Confidence 999999988774 3567899999954 778999999999999999876442 22222 234689999999999999887
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceE
Q 001358 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1092)
. +..|++++..+.........+ .+|++.+.+.+++++++--.+..+++||++....+....++.....+..-
T Consensus 374 ~----d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS 445 (519)
T KOG0293|consen 374 V----DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS 445 (519)
T ss_pred c----ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe
Confidence 6 556999998877665544443 58999999999999999999999999999988888888777655555566
Q ss_pred EEcc-CCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358 629 CFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 629 ~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
||.- +..++++|+.|+.|+||+..+++++..+.||...|.+++++| .+..++|+++.|
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP---------------------~~p~m~ASasDD 504 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP---------------------ADPEMFASASDD 504 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC---------------------CCHHHhhccCCC
Confidence 6765 568999999999999999999999999999999999999996 456779999999
Q ss_pred cccceecee
Q 001358 708 NKSEVEKPL 716 (1092)
Q Consensus 708 ~~i~~w~~~ 716 (1092)
|+||+|-..
T Consensus 505 gtIRIWg~~ 513 (519)
T KOG0293|consen 505 GTIRIWGPS 513 (519)
T ss_pred CeEEEecCC
Confidence 999999864
No 50
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8.4e-34 Score=289.60 Aligned_cols=295 Identities=16% Similarity=0.260 Sum_probs=253.6
Q ss_pred CCcceeEecccCCCCceEEeecC-CCceEEEEEcCcCcEEEEecCC-CCceeeeeeeeeecccccceeEEeeecCCCCcE
Q 001358 322 FPKTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~sp-dg~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
+|+..+.++.||+..|+++.|.| .+. ||++|+.|+.|+||++.. +.++++ +.||..+|
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~V 261 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPV 261 (503)
T ss_pred ccHhheeeccCCccccchhhhccceee-EEEecCCCceEEEEEEecCcceehh-------------------hhcchhhh
Confidence 68899999999999999999999 665 999999999999999987 677765 77899999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
..++|+++|..+.+++.|+.|++||+++|+++.. +. ....++|+.|.||+.. .+++|+.|+.|+.||+++++.++
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHH
Confidence 9999999999999999999999999999987653 21 3346899999999955 78889999999999999999999
Q ss_pred EEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
++..|-+.|..+.|. +++.++++.+.|++++||+.+..-.... .........++..+|++.++++-+. ++.|.
T Consensus 337 eYd~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~ 410 (503)
T KOG0282|consen 337 EYDRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIA 410 (503)
T ss_pred HHHhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEE
Confidence 999999999999995 4778999999999999999987765543 3334456788999999999988765 66788
Q ss_pred EEeCCC---CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CC
Q 001358 559 EWNESE---GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NG 634 (1092)
Q Consensus 559 iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~ 634 (1092)
++.... ....+.+.||... +.-..+.|+|||.+|++|+.||.+.+||.++-+++..+..|. ..+..+.|+| ..
T Consensus 411 ifs~~~~~r~nkkK~feGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 411 IFSTVPPFRLNKKKRFEGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVEP 487 (503)
T ss_pred EEecccccccCHhhhhcceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCCc
Confidence 887543 2344567887632 455678999999999999999999999999999999998774 4688999999 46
Q ss_pred CEEEEEeCCCeEEEEE
Q 001358 635 TLLAVIANENRIKILE 650 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~ 650 (1092)
..+|+++.||.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 7899999999999996
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.9e-31 Score=250.11 Aligned_cols=293 Identities=16% Similarity=0.235 Sum_probs=237.9
Q ss_pred ccccccEEEEEEecC-CcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001358 731 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 809 (1092)
Q Consensus 731 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~ 809 (1092)
.+|.+++..++++|. |..|++++.|..|++|+..... -|. ....+ ..+|...|++++
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~~-------ck~vl-d~~hkrsVRsvA 68 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SWT-------CKTVL-DDGHKRSVRSVA 68 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cEE-------EEEec-cccchheeeeee
Confidence 358889999999999 8999999999999999865310 011 11112 125999999999
Q ss_pred EecCCCEEEEEe-CCeEEEEEcC--CceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---eeeEeec
Q 001358 810 LSKNDAYLFSAS-GGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLE 883 (1092)
Q Consensus 810 ~s~dg~~l~~~s-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~ 883 (1092)
|+|.|++||+++ |.++.||.-. +.+++.++.+|.++|.|++|++ +|++||+++.|++|-||.+..+ ++...|+
T Consensus 69 wsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 69 WSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred ecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 999999999999 8999999876 4578999999999999999999 9999999999999999999854 5789999
Q ss_pred cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEE
Q 001358 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIY 962 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lw 962 (1092)
.|+..|..+.|+|...+|+|+|.|.+|++|+-..+ ....+.+.+.++.. .|.+++|.+.|..|++ +.|++++||
T Consensus 148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred cccccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEee
Confidence 99999999999999999999999999999988731 12557788888875 7999999999999888 578899999
Q ss_pred EcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCC
Q 001358 963 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1042 (1092)
Q Consensus 963 d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~ 1042 (1092)
...+ .+..-|++.+..+.|. + ..|++++.|+.|+++.-..+-.-..+... ....+.|...|+ ++.+.|..
T Consensus 223 ~~~~-----~~~~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVN--sV~w~p~~ 292 (312)
T KOG0645|consen 223 RLYT-----DLSGMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVN--SVQWNPKV 292 (312)
T ss_pred eecc-----CcchhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHH-Hhhhcccccccc--eEEEcCCC
Confidence 8652 2344578899999998 4 48999999999999987754222223211 122233566666 68899965
Q ss_pred CCEEEEEeCCCcEEEEecC
Q 001358 1043 PTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1043 ~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.++|++|++||.|++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 7899999999999999874
No 52
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-28 Score=261.51 Aligned_cols=505 Identities=15% Similarity=0.173 Sum_probs=351.2
Q ss_pred cccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee-EEEecC-CcceEEEeecccCCccEEEEEecCCeEEEEEcC
Q 001358 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517 (1092)
Q Consensus 440 h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~~-~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~ 517 (1092)
...+|.++||+.+++ .|+.+-.||.|.+|++..+=.. ..+.++ ...|.+++|. ++..|++.+.+|.|..||+.
T Consensus 24 ~Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEecc
Confidence 456799999999999 6999999999999999876433 455554 4579999996 45689999999999999999
Q ss_pred CCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe
Q 001358 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597 (1092)
Q Consensus 518 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 597 (1092)
+.+....+...++.|.+++.+|.+..++.++. ++.++.++...+.......-.. +.+.+.++.|+|++..+++|+
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~r-q~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMR-QKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeeccc-ccceEEEEEecCCccEEEecc
Confidence 99999999999999999999999999999875 5578888887776654332222 247899999999999999999
Q ss_pred CCCeEEEEECCCCceEEEEeC-----CC-CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeee
Q 001358 598 DDHVIKIWDMNKVQLLTTIDA-----GG-GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS 671 (1092)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 671 (1092)
.||.|++||..++..+..... .. ...-|.++.|-.+ ..+++|...|+|.+||...+..++.+..
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~--------- 243 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSC--------- 243 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhh---------
Confidence 999999999999988773321 11 1112445555543 4678888888888888887766665554
Q ss_pred ecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEE
Q 001358 672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 751 (1092)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 751 (1092)
|...|.+++..+++.++++
T Consensus 244 -------------------------------------------------------------h~adVl~Lav~~~~d~vfs 262 (691)
T KOG2048|consen 244 -------------------------------------------------------------HDADVLALAVADNEDRVFS 262 (691)
T ss_pred -------------------------------------------------------------hhcceeEEEEcCCCCeEEE
Confidence 4556666777777777777
Q ss_pred eecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEc
Q 001358 752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV 830 (1092)
Q Consensus 752 ~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~ 830 (1092)
++.|+.+..|....+.. -|-.. .....|...|.+++..++ .+++|+ |..+.+-..
T Consensus 263 aGvd~~ii~~~~~~~~~-------------~wv~~---------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 263 AGVDPKIIQYSLTTNKS-------------EWVIN---------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred ccCCCceEEEEecCCcc-------------ceeee---------ccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 77777776665543211 02111 111248889999999887 555555 666666554
Q ss_pred CCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce---------eeEeeccccCCeEEEEEcCCCCEE
Q 001358 831 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALNIL 901 (1092)
Q Consensus 831 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~---------~~~~l~~h~~~V~~l~~spdg~~l 901 (1092)
...+..........+-.+..... ..++|..--.+..+.+|.+.+.- +.+-...-...|.+.+.||||+++
T Consensus 319 ~~~~~~~h~~~~~~p~~~~v~~a-~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~I 397 (691)
T KOG2048|consen 319 REFKNMDHRQKNLFPASDRVSVA-PENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLI 397 (691)
T ss_pred cccCchhhhccccccccceeecC-ccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEE
Confidence 43221111110111112222222 34566666667788889887651 112222234569999999999999
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-E-eCCcEEEEEcCCcee--eeeec-cC
Q 001358 902 VSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTC--LKQWF-PI 976 (1092)
Q Consensus 902 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~d~~v~lwd~~~~~~--~~~~~-~~ 976 (1092)
+.+.- ..++||.++.........+....... .....+.|+-|+..++. + ....+.+++..+... +.... .+
T Consensus 398 a~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~---~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~ 473 (691)
T KOG2048|consen 398 AISTV-SRTKIYRLQPDPNVKVINVDDVPLAL---LDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQA 473 (691)
T ss_pred EEeec-cceEEEEeccCcceeEEEeccchhhh---ccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcccccc
Confidence 97654 44889988864322222222221111 25778999999988777 4 556788887765432 22211 12
Q ss_pred CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEE
Q 001358 977 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1056 (1092)
Q Consensus 977 h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~ 1056 (1092)
--..|..+..|+||.||++.+.+|.|.+|++.+++...... .+ .....+++++|.+...++.+..+++|.
T Consensus 474 ~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~---rl-------n~~vTa~~~~~~~~~~lvvats~nQv~ 543 (691)
T KOG2048|consen 474 KCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV---RL-------NIDVTAAAFSPFVRNRLVVATSNNQVF 543 (691)
T ss_pred CCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh---cc-------CcceeeeeccccccCcEEEEecCCeEE
Confidence 35789999999999999999999999999999997764332 01 123446788877778999999999999
Q ss_pred EEecCCCC
Q 001358 1057 VIEPNEPG 1064 (1092)
Q Consensus 1057 ~w~~~~~~ 1064 (1092)
-+|+...+
T Consensus 544 efdi~~~~ 551 (691)
T KOG2048|consen 544 EFDIEARN 551 (691)
T ss_pred EEecchhh
Confidence 99995433
No 53
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.7e-32 Score=296.30 Aligned_cols=264 Identities=14% Similarity=0.197 Sum_probs=229.7
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccc---------cCcccccccCCccccCCCCCceeeecCCCCCCCC
Q 001358 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT---------LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 803 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 803 (1092)
....+.|..|++|+..++.+-.|..|++|.+...+.. ......+.......|..++..... +. +|.+
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~--L~--GH~G 452 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT--LY--GHSG 452 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE--ee--cCCC
Confidence 3456889999999999999999999999999854321 111112222344455544442322 32 5999
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee
Q 001358 804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1092)
+|....|+|+.++|++++ |+++|+|.+.+..++..+++|..+|..+.|+| -|.++|||+.|++.++|......+++.+
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhh
Confidence 999999999999999999 69999999999999999999999999999999 8999999999999999999999999999
Q ss_pred ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEE
Q 001358 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAI 961 (1092)
Q Consensus 883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~l 961 (1092)
.||.+.|.|+.|+|+..++|+||.|.+|++||+.+|. .++.+.||.. +|.+++|||+|++||+ +.|+.|.+
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VRiF~GH~~---~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVRIFTGHKG---PVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEEEecCCCC---ceEEEEEcCCCceEeecccCCcEEE
Confidence 9999999999999999999999999999999999966 5666778776 8999999999999999 58899999
Q ss_pred EEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001358 962 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 962 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~ 1010 (1092)
||+.++..+.. +.+|.+.|.++.||.||..||+||.|++|++||+..-
T Consensus 604 WDl~~~~~v~~-l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 604 WDLANGSLVKQ-LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCCcchhh-hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999887 5689999999999999999999999999999998754
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.4e-30 Score=283.88 Aligned_cols=287 Identities=25% Similarity=0.412 Sum_probs=254.8
Q ss_pred EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+++++|.+.|++++|+|+++ ++++++.||.|.+|++.+++.... +..|...+..+.|+|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~ 62 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASAD 62 (289)
T ss_pred hHhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCC
Confidence 56789999999999999998 688999999999999998875543 5678899999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
+++|++++.++.|++||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 9999999999999999999875444 5678998999999999987 7888888999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001358 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
+.++++++. +.++++++.||.|++||++..+....+..+...+.++.|+|+++.+++++. ++.+++||..+++.
T Consensus 138 i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~ 211 (289)
T cd00200 138 VNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKC 211 (289)
T ss_pred EEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCce
Confidence 999999664 578888888999999999988888888888889999999999999998875 56799999999998
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001358 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
+..+..+. ..+.++.|+|++.++++++.+|.+++|++.+++....+..+ ...+.+++|+|+++++++++.||.++
T Consensus 212 ~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 212 LGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred ecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEE
Confidence 88887766 79999999999888888888999999999998888888744 34689999999999999999999999
Q ss_pred EEE
Q 001358 648 ILE 650 (1092)
Q Consensus 648 iw~ 650 (1092)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.7e-33 Score=269.78 Aligned_cols=276 Identities=21% Similarity=0.305 Sum_probs=234.5
Q ss_pred CCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
..+.|.|+.+..+ .+++|..|++|+|||..+-.+++. +.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeecc--ceEEE
Confidence 4568999999643 489999999999999999888875 88999999999995 67999
Q ss_pred EEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce---eEEEecCCcceE
Q 001358 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVY 489 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~ 489 (1092)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+.. ++++++.|.+|.|||+..... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999887 67789999999999853 799999999999999987653 356789999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001358 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1092)
.+.| +.+++++++.|.+|++|++.+.+.+.++.+|...|.++.+ .|+++++|+. +.+|++||+..|.+++
T Consensus 325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 9988 4569999999999999999999999999999999877764 5788888876 7789999999999999
Q ss_pred EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-------eCCCCCCCCceEEEccCCCEEEEEeC
Q 001358 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-------DAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
.++||+ .-|.++.|. .+.+++|+.||+|++||+..+...... ..-.+...|..+.| |...+++++.
T Consensus 395 vLeGHE---eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssH 467 (499)
T KOG0281|consen 395 VLEGHE---ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSH 467 (499)
T ss_pred HHhchH---Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccC
Confidence 999999 899999995 578999999999999999876433111 11122334666666 4677899999
Q ss_pred CCeEEEEECCCCCe
Q 001358 643 ENRIKILETPESNS 656 (1092)
Q Consensus 643 dg~i~iw~~~~~~~ 656 (1092)
|.+|.|||..++..
T Consensus 468 ddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 468 DDTILIWDFLNGPP 481 (499)
T ss_pred CCeEEEEEcCCCCc
Confidence 99999999987643
No 56
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.9e-32 Score=271.04 Aligned_cols=280 Identities=16% Similarity=0.218 Sum_probs=242.1
Q ss_pred CCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccce
Q 001358 623 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1092)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 702 (1092)
..|..+.|.|+|+.|++|+..|.+.+|+...-
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f------------------------------------------------ 128 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF------------------------------------------------ 128 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCcee------------------------------------------------
Confidence 45889999999999999999999999986311
Q ss_pred eeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCcc
Q 001358 703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 782 (1092)
Q Consensus 703 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~ 782 (1092)
.+.+-...|.+.|.++.|+++|.+++++..+|.|++|+...+. ++.
T Consensus 129 ----------------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn------------Vk~ 174 (464)
T KOG0284|consen 129 ----------------------NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN------------VKI 174 (464)
T ss_pred ----------------------eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh------------hHH
Confidence 0000112388999999999999999999999999999865431 111
Q ss_pred ccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEE
Q 001358 783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 861 (1092)
Q Consensus 783 ~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las 861 (1092)
. ...|...|++++|||+...+++++ ||+|+|||....+..+.+.+|.-.|.+++|+| ...+||+
T Consensus 175 ~--------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLias 239 (464)
T KOG0284|consen 175 I--------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIAS 239 (464)
T ss_pred h--------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEE
Confidence 1 012568999999999999999998 69999999999999899999999999999999 7789999
Q ss_pred EeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceE
Q 001358 862 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 941 (1092)
Q Consensus 862 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 941 (1092)
|+.|..|++||.++|.++.++.+|...|..+.|+|++++|+|+|.|..++++|+.+ .+.+....+|.. .+.+
T Consensus 240 gskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-----mkEl~~~r~Hkk---dv~~ 311 (464)
T KOG0284|consen 240 GSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-----MKELFTYRGHKK---DVTS 311 (464)
T ss_pred ccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-----hHHHHHhhcchh---hhee
Confidence 99999999999999999999999999999999999999999999999999999985 234566677765 7999
Q ss_pred EEEecCCCEEEE--EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001358 942 IQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 942 l~~s~dg~~la~--~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
++|+|-..-|.+ |.|+.|..|.+..-+.+..+..+|...|++++|.|=|..|++|+.|.++++|.-
T Consensus 312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 999998766655 699999999999778888888899999999999999999999999999999964
No 57
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.98 E-value=6.3e-30 Score=267.57 Aligned_cols=683 Identities=16% Similarity=0.184 Sum_probs=366.5
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
..+-.|.+|++.|+.+.|||-...|||+||.|..|+||.+..|-...- + -....+.+..-.|-++.|
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-S------------ape~~~g~~~~~vE~l~f 136 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-S------------APEIDVGGGNVIVECLRF 136 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-C------------CcceeecCCceEEEEeec
Confidence 455678899999999999998777999999999999999985422110 0 011225555668899999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC-CceeEEEec
Q 001358 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYSFEG 483 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~~~~~ 483 (1092)
+|...-|...+..|+++|||+.+++.+. ++.+|...|.++.|+.||+ +|++++.|+.|+|||.+. ++.++...+
T Consensus 137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~ 211 (1012)
T KOG1445|consen 137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG 211 (1012)
T ss_pred ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence 9977666666688899999999986554 7889999999999999999 899999999999999874 688888888
Q ss_pred CCcceE-EEeecccCCccEEEEEecC----CeEEEEEcCCCCc-eEEecCC-CCceEEEEEecCCCEEEEEecCCCCcee
Q 001358 484 HGAPVY-SLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA-RVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1092)
Q Consensus 484 ~~~~v~-~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~-~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1092)
|.+.-- .+.| .++-..|++.+.+ ..|++||.+.... ..++... ...|.---|.||.++|+.++ .++..
T Consensus 212 H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~ 286 (1012)
T KOG1445|consen 212 HGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNK 286 (1012)
T ss_pred cccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcce
Confidence 876521 2333 4454567666655 4589999876543 2333222 22555667899999988876 45777
Q ss_pred EEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe---------C-------
Q 001358 557 LVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---------A------- 618 (1092)
Q Consensus 557 i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---------~------- 618 (1092)
++.+.+...+.. ..+...- .......++-|....-+..++ ..+++.+.+...+...- .
T Consensus 287 l~~lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPe 362 (1012)
T KOG1445|consen 287 LFMLEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPE 362 (1012)
T ss_pred EEEEEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchh--hhhheecccCceeecccccchhhhhhhhhhhCcc
Confidence 888877654431 1111000 011122233332211111111 11111111111110000 0
Q ss_pred --------------CCCCCCCceEEEccCCC-----------EEEEEeCCCeEEEEECCCC-Ceeeec------------
Q 001358 619 --------------GGGLPENPRICFNKNGT-----------LLAVIANENRIKILETPES-NSVDAA------------ 660 (1092)
Q Consensus 619 --------------~~~~~~v~~v~~s~~~~-----------~l~~~~~dg~i~iw~~~~~-~~~~~~------------ 660 (1092)
.+....+..+...|..+ .-.++..-.-+.+.-.... ......
T Consensus 363 T~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~ 442 (1012)
T KOG1445|consen 363 TRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQE 442 (1012)
T ss_pred ccCCccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCcccc
Confidence 00001111111111000 0000000000000000000 000000
Q ss_pred ---ccccccceeeeecCCcccccccccCCceee-cCCCCCCcccceeeccccccceeceee---c----cCc---cceec
Q 001358 661 ---GVLSDNLRKLSVNPISTVTGAGIANGSVSV-NEDPKEDVKPEISVEAENKSEVEKPLF---A----RPS---ECQSL 726 (1092)
Q Consensus 661 ---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~d~~~l~s~~~d~~i~~w~~~~---~----~~~---~~~~~ 726 (1092)
-.....+..+.+.|.....+.......... .+..+ .+-+.+.. .+.+-.... . .+. ..+.-
T Consensus 443 qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS----~~s~~~~~-~~~~~kP~S~plt~~~s~~s~~~P~~~k 517 (1012)
T KOG1445|consen 443 QPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSS----PISTISPE-PVTIVKPASTPLTDSVSTPSVVGPAFGK 517 (1012)
T ss_pred CCCcCcchhhhhhcccccccccCccCCCcccccccCCCC----CccccCCC-cccccCCCCcccccccccccccCccccc
Confidence 000011111111111111100000000000 00000 00000000 000000000 0 000 00000
Q ss_pred ccCC---ccccccE---EEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCC
Q 001358 727 LLPS---KVKANKI---SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 800 (1092)
Q Consensus 727 ~~~~---~~~~~~i---~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 800 (1092)
..|. ..-...+ ..+-.++.-+..-+. -|.+.-|. ..+|..... ...+-++. -..
T Consensus 518 svPe~~~~~~g~~~sat~~v~~s~s~r~~s~v--~G~iSKFR------H~~Gt~ghk-s~hi~NLr----nln------- 577 (1012)
T KOG1445|consen 518 SVPEQPPVNFGKPISATNRVPLSQSVRPKSCV--VGQISKFR------HVDGTQGHK-SAHISNLR----NLN------- 577 (1012)
T ss_pred cCCCCCCcccCCCcccccccccccccccccee--eccchhee------eccCccccc-hhhhhhhh----ccc-------
Confidence 0000 0000000 000000000000000 00000000 000000000 00000000 000
Q ss_pred CCCCeeEEEEecCCCEEEEE---eCCeEEEEEcCCc-eeeEE-ecC--CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001358 801 SQEAVPCFALSKNDAYLFSA---SGGVISLYIVMTF-KTILT-IMP--PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 873 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~---sdg~i~iwd~~~~-~~~~~-~~~--~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~ 873 (1092)
..-+-.|--|..+.+.+|+- +.|.|.||++... ++... +.+ ....|+.+.|.|.|...||+++.||.|++|.+
T Consensus 578 ~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~ 657 (1012)
T KOG1445|consen 578 TRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRL 657 (1012)
T ss_pred ccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEe
Confidence 11111222345566677654 3689999999743 32211 111 34578999999999999999999999999999
Q ss_pred CCc-------eeeEeeccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEe
Q 001358 874 RSS-------EVISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 945 (1092)
Q Consensus 874 ~~~-------~~~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 945 (1092)
..+ ..-..+.+|...|+++.|+|= ...|++++.|-+|++||+.+.+ ....+.+|.. .|..++||
T Consensus 658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHtd---qIf~~AWS 729 (1012)
T KOG1445|consen 658 TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHTD---QIFGIAWS 729 (1012)
T ss_pred ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCcC---ceeEEEEC
Confidence 764 345778899999999999993 5789999999999999999854 3344556665 89999999
Q ss_pred cCCCEEEE-EeCCcEEEEEcCCceeeeeeccC-CCcCEEEEEEecCCCEEEEEeCCC----cEEEEECCCCceEEeeccc
Q 001358 946 KDQTRFLL-VHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDG----TLSIHEASNLEVQCRILST 1019 (1092)
Q Consensus 946 ~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~s~Dg----~i~vwd~~~~~~~~~~~~~ 1019 (1092)
|||+.+|+ +.||+|++|+..+++....-..+ -..+-..+.|.-||+++++.+.|. .|.+||..+..+..-....
T Consensus 730 pdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~ 809 (1012)
T KOG1445|consen 730 PDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV 809 (1012)
T ss_pred CCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee
Confidence 99999999 89999999999877643221222 144556788999999999888774 4888988776532111111
Q ss_pred cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCccccCCCCC
Q 001358 1020 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus 1020 ~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
....+. . +-=.++++.+-+|++|-.|..|.+|++..+.|..-.+.|+.
T Consensus 810 lDvaps----~---LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~ 857 (1012)
T KOG1445|consen 810 LDVAPS----P---LVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFM 857 (1012)
T ss_pred ecccCc----c---ccccccCCCceEEEecCCCceEEEEEecCCCceeeeccccc
Confidence 111111 1 11125666677899999999999999999998776665554
No 58
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=2.9e-30 Score=293.04 Aligned_cols=291 Identities=21% Similarity=0.304 Sum_probs=254.3
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEEC-
Q 001358 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA- 472 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~- 472 (1092)
.|...|.++.|||||+++++++.++.+++|+..+++. .....+.+|...|.+++|+||++ ++++++.|++|+|||+
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence 3588999999999999999999999999999977662 12235679999999999999999 8999999999999999
Q ss_pred CCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCC
Q 001358 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
..+..++++.+|...|++++|++ +++++++|+.|++|++||+++++....+..|...|.+++|+++|++|++++.
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~--- 308 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY--- 308 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence 56689999999999999999966 5589999999999999999999999999999999999999999999999865
Q ss_pred CceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCC-CCCceEE
Q 001358 553 GESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRIC 629 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~ 629 (1092)
++.|++||..++. +...+.++.... ++..+.|+|++.++++++.|+.+++||+..+........+... ..+....
T Consensus 309 -d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 309 -DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred -CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 7789999999999 567888877333 7999999999999999999999999999999999888877553 1233455
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCCeeeecccc-cccceeeeecCCcccccccccCCceeecCCCCCCcccceeec--c
Q 001358 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--A 706 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~ 706 (1092)
.++.+.++++|+.|+.|.+|+..++..+..+.+| ...+..+.++ +...++++++ .
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~----------------------~~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH----------------------PTENLIASSSFEG 444 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccC----------------------CCcCeeeecCcCC
Confidence 5789999999999999999999999999999998 7777777775 5566777777 6
Q ss_pred ccccceecee
Q 001358 707 ENKSEVEKPL 716 (1092)
Q Consensus 707 d~~i~~w~~~ 716 (1092)
|+.+++|..+
T Consensus 445 d~~~~~w~~~ 454 (456)
T KOG0266|consen 445 DGLIRLWKYD 454 (456)
T ss_pred CceEEEecCC
Confidence 7889999753
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.4e-31 Score=271.71 Aligned_cols=290 Identities=15% Similarity=0.192 Sum_probs=253.5
Q ss_pred eecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccC-CCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEE
Q 001358 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~-~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 468 (1092)
.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.+|..+|.+++|+++|. .++|+|.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 4889999999999999 899999999999999999987 65555 7889999999999999999 799999999999
Q ss_pred EEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEe
Q 001358 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
+||+++|+++..|. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999986 45678889998765 57999999999999999999999999999999999999999999999998
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eEEEEeCCCCCCCC
Q 001358 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---LLTTIDAGGGLPEN 625 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~v 625 (1092)
. +..+++|+...+-.+.....+. .....++..+|+++++++-+.|+.|.++.+...- ....+.+|.....-
T Consensus 362 D----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 362 D----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred c----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 6 5579999999887776655544 3567889999999999999999999999865432 22344444433445
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeec
Q 001358 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1092)
..+.|||||.+|++|..||.+.+||..+.+.+..++.|...+..+.|.|. ....+++++
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~---------------------e~Skvat~~ 494 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV---------------------EPSKVATCG 494 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC---------------------CcceeEecc
Confidence 67999999999999999999999999999999999999999999999864 345689999
Q ss_pred cccccceec
Q 001358 706 AENKSEVEK 714 (1092)
Q Consensus 706 ~d~~i~~w~ 714 (1092)
.+|.|++|+
T Consensus 495 w~G~Ikiwd 503 (503)
T KOG0282|consen 495 WDGLIKIWD 503 (503)
T ss_pred cCceeEecC
Confidence 999999996
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.4e-30 Score=238.22 Aligned_cols=271 Identities=20% Similarity=0.308 Sum_probs=239.7
Q ss_pred eeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 390 ~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
.++..|+++|.++.|+-||+|.++++.|.+|++|+...|.+++ ++.+|...|..++.+.|+. .+++|+.|..+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3477899999999999999999999999999999999998777 7889999999999999998 6999999999999
Q ss_pred EECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEecCCCEEEEE
Q 001358 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
||+++|+.++.+.+|.+.|+.+.|+ .+...+++|+.|..+++||-++.. +++.+......|.++..+ +..++++
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 9999999999999999999999995 456799999999999999987654 556666666778777664 5667777
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+. +++++.||++.|+...-+-+ .+|+++.|+++++..++++.|+++++.|-.+|+++....+|.....-..
T Consensus 162 S~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 162 SV----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred cc----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence 66 77799999999998777776 5699999999999999999999999999999999999998877655567
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCCeeeeccccccc-ceeeeecCCccc
Q 001358 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPISTV 678 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~ 678 (1092)
++++....++++|++||.+.+||+.+...+..+..+... +..+++.|....
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~ 284 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD 284 (307)
T ss_pred eeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence 888888899999999999999999999999998888877 788888865443
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=6.7e-31 Score=244.85 Aligned_cols=291 Identities=16% Similarity=0.220 Sum_probs=255.3
Q ss_pred EecccCCCCceEEeec---CCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 328 QTLIEGSSSPMSMDFH---PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~s---pdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+-.||+.+|..++|| |+| ++|++++.|+.-.+-+-++|.=+.+ +.||.+.|.+...
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l 67 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL 67 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence 4558999999999998 578 5899999999999999999988876 7799999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEec
Q 001358 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG 483 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~ 483 (1092)
..+..+-|+++.|-+-+|||.-+|..+. .+ .|..-|.+++|+.|.+ +|++|+.++.++|+|++..+ +...+.+
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence 9999999999999999999999998776 33 5888999999999999 79999999999999998764 4678899
Q ss_pred CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
|.+.|..+.|... .+.+++.+.|++||+||.+++.....+... .+|+++.+++||++|..+. .+.|..||..
T Consensus 142 htg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdak 213 (334)
T KOG0278|consen 142 HTGGIRTVLWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAK 213 (334)
T ss_pred CCCcceeEEEecc--CceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEeccc
Confidence 9999999988653 367888899999999999999988877654 4889999999999988775 3349999999
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001358 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
+-..++.+.... .|.+..++|+...+++|++|..++.||..+|..+.... .++..+|.|+.|+|+|...++|+.|
T Consensus 214 sf~~lKs~k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 214 SFGLLKSYKMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred cccceeeccCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCceeeccCCC
Confidence 999988887654 78999999999999999999999999999999988852 2334679999999999999999999
Q ss_pred CeEEEEECCCCCee
Q 001358 644 NRIKILETPESNSV 657 (1092)
Q Consensus 644 g~i~iw~~~~~~~~ 657 (1092)
|+|++|....++..
T Consensus 289 GTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 289 GTIRLWQTTPGKTY 302 (334)
T ss_pred ceEEEEEecCCCch
Confidence 99999998866443
No 62
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.8e-31 Score=259.93 Aligned_cols=276 Identities=16% Similarity=0.252 Sum_probs=234.0
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC
Q 001358 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
...|.|+.+ |...+++|..|++|+|||.++-.+++ .+.||++.|.|+.|. .+ .+++|+.|.+|+|||+++|
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccCC
Confidence 457889988 57789999999999999999987766 688999999999984 45 8999999999999999999
Q ss_pred ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEecCCCEEEEEecCCC
Q 001358 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
+++.++-+|...|..+.|+ ..++++++.|.++.+||+...... ..+.+|...|..+.|+ .+++++++.
T Consensus 268 e~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg--- 338 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG--- 338 (499)
T ss_pred chhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC---
Confidence 9999999999999999983 259999999999999999876643 3567888889888875 458988875
Q ss_pred CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
+.+|++|+..+++.++++.+|. ..|.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.|.
T Consensus 339 -DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd- 409 (499)
T KOG0281|consen 339 -DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD- 409 (499)
T ss_pred -CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec-
Confidence 7789999999999999999998 78888776 468999999999999999999999999987754 58999995
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCe---------eeecccccccceeeeecCCcccccccccCCceeecCCCCCCccccee
Q 001358 633 NGTLLAVIANENRIKILETPESNS---------VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 633 ~~~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
.+.+++|..||+|++||+..+.. +..+..|.+.|..+.| |...+++
T Consensus 410 -~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF------------------------D~fqIvs 464 (499)
T KOG0281|consen 410 -NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF------------------------DEFQIIS 464 (499)
T ss_pred -CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee------------------------cceEEEe
Confidence 67899999999999999987632 3334456666666655 4677899
Q ss_pred eccccccceeceeeccCccc
Q 001358 704 VEAENKSEVEKPLFARPSEC 723 (1092)
Q Consensus 704 ~~~d~~i~~w~~~~~~~~~~ 723 (1092)
++.|.+|.+||+....+...
T Consensus 465 ssHddtILiWdFl~~~~~~~ 484 (499)
T KOG0281|consen 465 SSHDDTILIWDFLNGPPSAA 484 (499)
T ss_pred ccCCCeEEEEEcCCCCcccc
Confidence 99999999999876555433
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=7.1e-29 Score=304.78 Aligned_cols=294 Identities=14% Similarity=0.172 Sum_probs=238.6
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-CC
Q 001358 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 408 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg 408 (1092)
+..|.+.|++++|+|+|+ ++|+|+.|+.|+|||+.+...... . .......+. +...|.+++|+| ++
T Consensus 479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIK 545 (793)
T ss_pred ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCC
Confidence 456999999999999998 799999999999999864211000 0 000000122 356899999988 58
Q ss_pred CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeC-CCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
.+||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 899999999999999999876544 6789999999999997 677 8999999999999999999999888755 57
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC-
Q 001358 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 565 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~- 565 (1092)
|.++.|.+ +++.+|++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. ++.|++||+..+
T Consensus 620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~ 693 (793)
T PLN00181 620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSI 693 (793)
T ss_pred eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCc
Confidence 88888853 467899999999999999998765 455777888899999997 7888988876 667999999743
Q ss_pred -----eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeC-----------CCCCCCCceEE
Q 001358 566 -----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRIC 629 (1092)
Q Consensus 566 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~ 629 (1092)
..+..+.+|. ..+..++|+|++.++++|+.|+.|++|+......+..... ..+...|.+++
T Consensus 694 ~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 694 SGINETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred cccCCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 5677888877 8899999999999999999999999999876654433221 12234589999
Q ss_pred EccCCCEEEEEeCCCeEEEEEC
Q 001358 630 FNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
|+|++..|++++.+|.|+||++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999986
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.5e-28 Score=266.13 Aligned_cols=285 Identities=23% Similarity=0.342 Sum_probs=253.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|..+|.+++|+|++++|++++.+|.|++|++.+++... .+..|...+..+.|+|+++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876433 5678999999999999998 799999999999999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+.+++.+..+..|...+.++.|.+. +.++++++.+|.+++||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9999899999999999999999654 578888888999999999988888888888889999999999988888763
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
++.|++||..+++.+..+..+. ..+.++.|+|+++.+++++.++.+++||+.+++.+..+..+. ..+.+++|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~ 228 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFS 228 (289)
T ss_pred --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEc
Confidence 5569999999999888888766 789999999999999999999999999999988888775443 368999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccc
Q 001358 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1092)
|++.++++++.+|.+++|+..++.....+..+...+.++.++ ++++.+++++.|+.++
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS----------------------PDGKRLASGSADGTIR 286 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC----------------------CCCCEEEEecCCCeEE
Confidence 998888888889999999999888888888888888888886 6788899999999999
Q ss_pred eec
Q 001358 712 VEK 714 (1092)
Q Consensus 712 ~w~ 714 (1092)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.2e-30 Score=257.92 Aligned_cols=298 Identities=16% Similarity=0.228 Sum_probs=259.1
Q ss_pred cCCCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcE
Q 001358 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
+.+|..+...|..|.++|..+.|-++.. .|++|+.|..|++|++..++.-.. ..|.|..++|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence 6678899999999999999999999966 489999999999999988763221 1277888999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
+++.|.++++++++++.|+.+++|++...+... ++.||++.|+++.|..... .+++|+.|.+|++||+..+.|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999976555 7889999999999998776 59999999999999999999988
Q ss_pred EEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
++- ....+..|+.. ...+++|-.|++|++||.++.........++ .|+++..+++|..+.+++. +.++.+
T Consensus 298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 764 33445566553 3578999999999999999999888887766 9999999999999999976 667999
Q ss_pred EeCCCCeEEEEEeecccc-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001358 560 WNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 560 wd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
.|.++.+....+...... ....+.+.|+|++.|+++||.||.|+||++.++++...+......+.|.+++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 999999998888654321 1347889999999999999999999999999999999998777666799999999999999
Q ss_pred EEeCCCeEEEEE
Q 001358 639 VIANENRIKILE 650 (1092)
Q Consensus 639 ~~~~dg~i~iw~ 650 (1092)
+++.++.+.+|.
T Consensus 448 sadk~~~v~lW~ 459 (459)
T KOG0288|consen 448 SADKQKAVTLWT 459 (459)
T ss_pred cccCCcceEecC
Confidence 999999999983
No 66
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.2e-30 Score=246.68 Aligned_cols=290 Identities=17% Similarity=0.219 Sum_probs=239.9
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
..+.+.+..|||||+++++++-||.|.+|++..++...+-+..+... ++ -+..+|.|+.||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~-----------fM-------Mmd~aVlci~FSR 273 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDN-----------FM-------MMDDAVLCISFSR 273 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcc-----------ee-------ecccceEEEeecc
Confidence 45678889999999999999999999999988765533333222111 11 1678999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeE
Q 001358 813 NDAYLFSAS-GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 890 (1092)
Q Consensus 813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 890 (1092)
|...+|+|+ ||.|++|.+.+|.+++.|. +|...|+|+.||. |+..+.+++.|.+++|.-+.+|++++.++||++-|+
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 999999998 8999999999999999997 8999999999999 888999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC--EEEEEeCCcEEEEEcCCce
Q 001358 891 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT--RFLLVHETHLAIYEAEELT 968 (1092)
Q Consensus 891 ~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~--~la~~~d~~v~lwd~~~~~ 968 (1092)
...|++||.++++++.||+|++|+.++.+ ++.++.... ...+|.++-.-|.+. ++++...++++|.++. |+
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~Ktte-----C~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQ 425 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTE-----CLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQ 425 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchh-----hhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ce
Confidence 99999999999999999999999999966 333332211 113578888777653 4444567889999985 77
Q ss_pred eeeeeccCC--CcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEE
Q 001358 969 CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1046 (1092)
Q Consensus 969 ~~~~~~~~h--~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l 1046 (1092)
.++.+..|. .+.-.+.+.||.|.++...+.|+.++-+.+.+|.+...+..+.-.+ +.++-|| ..+.+
T Consensus 426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdv----------IGl~HHP-HqNll 494 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDV----------IGLTHHP-HQNLL 494 (508)
T ss_pred EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccc----------cccccCc-ccchh
Confidence 787766554 5666778899999999999999999999999999998887444222 3477888 46899
Q ss_pred EEEeCCCcEEEEe
Q 001358 1047 AVGLTNGEVYVIE 1059 (1092)
Q Consensus 1047 ~~~~~dg~v~~w~ 1059 (1092)
|+=+.||.+++|.
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999996
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.4e-29 Score=254.24 Aligned_cols=287 Identities=19% Similarity=0.234 Sum_probs=243.6
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC
Q 001358 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
..+.|. .|++++|||...+=+|+.+. -.+.||+..+...+++ +..-...|.++.|-.||
T Consensus 22 ~~ke~~-~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG 80 (487)
T KOG0310|consen 22 VHKEHN-SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDG 80 (487)
T ss_pred cccccC-cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCC
Confidence 334555 99999999966544454433 6799999988776654 23355789999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce
Q 001358 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
++||+|...|.|+|+|+.+...++ .+.+|+.+|..+.|+|++.+ .+++|+.|+.+++||+.+......+.+|++.|
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYV 156 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYV 156 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCccee
Confidence 999999999999999977654455 57899999999999999887 89999999999999999999877999999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe-E
Q 001358 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-I 567 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~ 567 (1092)
.+.++++. ++.+++||+.||.|++||.+.......--.|+.+|..+.+-|.|..+++++. +.+++||+.+|. .
T Consensus 157 R~g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-----n~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 157 RCGDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-----NSVKVWDLTTGGQL 230 (487)
T ss_pred EeeccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-----CeEEEEEecCCcee
Confidence 99999876 4579999999999999999998665555668889999999999999999874 459999999554 4
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001358 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
+..+..|. ..|+|+.+..++..|++|+-|+.|++||+.+.+.+..+...+ +|.+++.+|+++.+++|..||.+.
T Consensus 231 l~~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 231 LTSMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred hhhhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceee
Confidence 44444466 899999999999999999999999999999999999988764 489999999999999999999988
Q ss_pred EEECC
Q 001358 648 ILETP 652 (1092)
Q Consensus 648 iw~~~ 652 (1092)
+-+..
T Consensus 305 ~rr~~ 309 (487)
T KOG0310|consen 305 IRRRE 309 (487)
T ss_pred eehhh
Confidence 76433
No 68
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.7e-28 Score=234.40 Aligned_cols=316 Identities=17% Similarity=0.205 Sum_probs=244.7
Q ss_pred cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCce-eeeeeeeeecccccceeEEeeecCCCCcEEEE
Q 001358 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
......|..|+..+.+.+|||||. |+|+|+.|.+|+|.|++.--.. ...++..=+.......+ ..+-.|.+.|+++
T Consensus 102 ~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvI--RTlYDH~devn~l 178 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVI--RTLYDHVDEVNDL 178 (430)
T ss_pred ccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceE--eehhhccCcccce
Confidence 444567889999999999999998 8999999999999999721000 00000000111111111 2377899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-
Q 001358 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF- 481 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~- 481 (1092)
.|+|....|++|+.|++|+++|...-...+....+ ....+|.++.|+|.|. +|+.|....++++||+++-++...-
T Consensus 179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred eecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecC
Confidence 99999999999999999999999765433332222 3456899999999999 7888999999999999998886543
Q ss_pred --ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CC-CceEEEEEecCCCEEEEEecCCCCceeE
Q 001358 482 --EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PG-LGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 482 --~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
.+|.+.|+++.++ +.+.+.++++.||.|++||--+.+++.++.. |+ ..|.+..|..+|+++++.+. +..+
T Consensus 256 Pd~qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~v 329 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTV 329 (430)
T ss_pred cccccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----ccee
Confidence 4699999999985 4668999999999999999888888776543 33 47899999999999999875 7789
Q ss_pred EEEeCCCCeEEEEEeeccccC--CceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001358 558 VEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
++|.+.+++.+..+.|..... .--+...|+....+++.-. ..+.++-||.+++..+..+.. ++...+..+.-||.+
T Consensus 330 kLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~ 408 (430)
T KOG0640|consen 330 KLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVE 408 (430)
T ss_pred eeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCC
Confidence 999999999999998763111 1123445777777777744 457899999999887766654 345678999999999
Q ss_pred CEEEEEeCCCeEEEEECC
Q 001358 635 TLLAVIANENRIKILETP 652 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~ 652 (1092)
.-+++++.|..+++|-..
T Consensus 409 p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 409 PAFMTCSDDFRARFWYRR 426 (430)
T ss_pred Cceeeecccceeeeeeec
Confidence 999999999999999644
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.6e-27 Score=292.90 Aligned_cols=322 Identities=14% Similarity=0.176 Sum_probs=247.6
Q ss_pred cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC----CCc
Q 001358 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDA 431 (1092)
Q Consensus 356 d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~ 431 (1092)
+|.+++|+..+-...... +..-+..|.+.|.+++|+|+|++||+|+.|+.|+|||..+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 567888887765433211 11114569999999999999999999999999999998642 111
Q ss_pred c-ceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCe
Q 001358 432 R-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 510 (1092)
Q Consensus 432 ~-~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~ 510 (1092)
. ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|...|++++|++. ++.+|++|+.||+
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 112233 3467999999986433 7999999999999999999999999999999999999753 5679999999999
Q ss_pred EEEEEcCCCCceEEecCCCCceEEEEEe-cCCCEEEEEecCCCCceeEEEEeCCCCe-EEEEEeeccccCCceEEEEEcC
Q 001358 511 IKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 511 i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
|++||+.+......+..+ ..+.++.|+ ++|.++++++. ++.|++||++++. .+..+.+|. ..|.++.|.
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~- 670 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV- 670 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-
Confidence 999999988777766644 578899995 57899999876 6679999998765 456677776 889999997
Q ss_pred CCCEEEEEeCCCeEEEEECCCC------ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeeccc
Q 001358 589 AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1092)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1092)
++..+++++.|++|++||+..+ ..+..+..|. ..+..++|+|++.+|++|+.|+.+++|+............
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 6789999999999999999743 4566666553 4578999999999999999999999999765432221110
Q ss_pred c-cccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEE
Q 001358 663 L-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 741 (1092)
Q Consensus 663 ~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 741 (1092)
. ...+ .. .....+...|.+++
T Consensus 749 ~~~~~~--------------------------------------------------------~~--~~~~~~~~~V~~v~ 770 (793)
T PLN00181 749 KTIDPV--------------------------------------------------------SG--LEVDDASQFISSVC 770 (793)
T ss_pred ccCCcc--------------------------------------------------------cc--cccCCCCcEEEEEE
Confidence 0 0000 00 00012456799999
Q ss_pred EecCCcEEEEeecCCeeEEeee
Q 001358 742 YNNGGQAIFALASNGVHLMWRW 763 (1092)
Q Consensus 742 ~s~~g~~l~~~~~dg~i~lw~~ 763 (1092)
|++++..+++++.+|.|++|++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999985
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.7e-28 Score=276.31 Aligned_cols=307 Identities=19% Similarity=0.246 Sum_probs=250.7
Q ss_pred cCCCCceEEeecCCCceEEEEEc--CcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCC
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
.+...|..++.+|||. .+|+|+ .|+.++||+.+.--.. .+.+|.. .+-....+..|.+.|+|+.|||||+
T Consensus 11 H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred cCCeeEEEEEecCCce-eEecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCC
Confidence 3455789999999998 589999 8999999997642100 0111111 0111223667999999999999999
Q ss_pred EEEEEeCCCEEEEEEccC---C------------CCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC
Q 001358 410 LLGVAYSKHIVQLYAYHG---G------------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~---~------------~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
|||+|++|+.|.||+... + +..+....+.+|.+.|..++|+|++. +|++++.|++|.|||..+
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEcccc
Confidence 999999999999999883 1 11234557889999999999999999 899999999999999999
Q ss_pred CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC------CceEEEEEecCCCEEEEEe
Q 001358 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------LGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------~~i~~~~~s~dg~~l~~~~ 548 (1092)
.+.+..+.+|...|..+.| +|-|++|++-+.|++|++|+...-+....+..+- .-+..+.|||||++|++..
T Consensus 161 F~~~~vl~~H~s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ceeeeeeecccccccceEE--CCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999999999 5567999999999999999977755555544432 2478899999999999988
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC-----CC------------EEEEEeCCCeEEEEECCCCc
Q 001358 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KD------------QILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~s~dg~i~iwd~~~~~ 611 (1092)
.-+.+...+.|.+..+.+.-..+.||. .++.++.|+|. .+ .+++|+.|++|.||.....+
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 777778889999998888889999999 89999999983 11 46779999999999998877
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
++.....-.. ..|..++|+|||..|++++.||+|.++.....
T Consensus 316 Pl~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 316 PLFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred chhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 7765543222 46899999999999999999999999998754
No 71
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=7.6e-28 Score=226.52 Aligned_cols=279 Identities=16% Similarity=0.236 Sum_probs=242.7
Q ss_pred EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp- 406 (1092)
+.+++|...|.+|+|+.||+ -||+|+.|+++.+|+++..+.+.... ..+|.+.|..++|+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~~-----------------~~gh~~svdql~w~~~ 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKELV-----------------YRGHTDSVDQLCWDPK 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhhc-----------------ccCCCcchhhheeCCC
Confidence 66789999999999999998 59999999999999999885554322 678999999999998
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001358 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
...++++++.|.+|++||...+++.... .. .+.=..+.|+|+|+ +++.++.|..|...|.++.+.+...+ ...
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~i---~~-~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~ 148 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTARI---ET-KGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKF 148 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEEe---ec-cCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccc
Confidence 6789999999999999999999876633 22 23334578999999 79999999999999999888776654 445
Q ss_pred ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001358 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
.++.++|+. ++.+++.....|+|.|..+...+++..+..|...+.++.|+|+|+++++|+. +..+.+||+..--
T Consensus 149 e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELi 222 (313)
T KOG1407|consen 149 EVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELI 222 (313)
T ss_pred eeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhh
Confidence 677788873 4457777777899999999999999999999999999999999999999987 6679999999999
Q ss_pred EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001358 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
+++.+..+. -+|..+.|+-+|++|++||+|..|-|=++++|..+..++..+. ...|+|+|...+||.+++|
T Consensus 223 C~R~isRld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 223 CERCISRLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hheeecccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCCceeeEEecC
Confidence 999999888 8999999999999999999999999999999999999987654 6899999999999988775
No 72
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-27 Score=225.35 Aligned_cols=287 Identities=10% Similarity=0.101 Sum_probs=239.0
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC
Q 001358 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
.|+||..+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+ +.||++.|.|+..+.+.
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s 64 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS 64 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence 4789999999999999999 899999999999999999999987 88999999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEe-----CCCcEEEEECC-------CCc
Q 001358 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAV-------TGS 476 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~-----~d~~i~vwd~~-------~~~ 476 (1092)
+++++|+.|.++++||+++|+++.. + ....+|..+.|+++|. +++.+. ..+.|.++|++ ..+
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 9999999999999999999987763 3 3456899999999999 343332 34679999987 455
Q ss_pred eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEecCCCEEEEEecCCCCce
Q 001358 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1092)
+...+..+...++.+.|.+. +++|++|..||.|..||++++.... ....|...|+.+.+++|..++++++. +.
T Consensus 139 p~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dt 212 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DT 212 (327)
T ss_pred ceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cc
Confidence 67888888899999999654 4799999999999999999976655 45678889999999999999999986 56
Q ss_pred eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEE--------------EECCCCceEEEEeCCCC
Q 001358 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI--------------WDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i--------------wd~~~~~~~~~~~~~~~ 621 (1092)
+-.+||..+-+.++++.... +|++.+++|...+++.|+.....-+ |++-..+.+..+.. +
T Consensus 213 takl~D~~tl~v~Kty~te~----PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG--H 286 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTER----PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG--H 286 (327)
T ss_pred cceeeeccceeeEEEeeecc----cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc--c
Confidence 68999999999999998754 9999999999888888764332222 22222233344444 4
Q ss_pred CCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358 622 LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
..+|++++|+|+|+..++|+.||.|++.....
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 56799999999999999999999999986553
No 73
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=4.4e-29 Score=232.82 Aligned_cols=286 Identities=14% Similarity=0.183 Sum_probs=254.0
Q ss_pred ecCCCCcEEEEEECC---CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEE
Q 001358 392 VRDPGVSVNRVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 392 l~~h~~~V~~l~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 468 (1092)
..||+.+|..++||| +|-+|++++.|+.=.+-+-++|.-+. ++.||.+.|++.....+.. ..++++.|-+.+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadftak 84 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTAK 84 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchhh
Confidence 779999999999996 89999999999988887878886665 8899999999999998877 789999999999
Q ss_pred EEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEEEE
Q 001358 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
|||.-+|..+++|. |...|.+++| +.|..+|++|+.++.+|++|++..+. ...+.+|.+.|..+.|....+.+++.
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 99999999999996 8999999999 45778999999999999999987654 55788999999999999999999987
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+. ++.|++||.+++..++++... .+|.++.++++|.++.+ ...+.|.+||..+..++.....+.. |.+
T Consensus 162 ad----d~tVRLWD~rTgt~v~sL~~~----s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~n---V~S 229 (334)
T KOG0278|consen 162 AD----DKTVRLWDHRTGTEVQSLEFN----SPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCN---VES 229 (334)
T ss_pred cc----CCceEEEEeccCcEEEEEecC----CCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCccc---ccc
Confidence 54 667999999999999998864 48999999999875544 4567899999999999998887644 788
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCCeeeec-ccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecc
Q 001358 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 706 (1092)
..++|+...+++|+.|..++.||..++..+... ++|.++|.|+.|+ |||...++|+.
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS----------------------PdGE~yAsGSE 287 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS----------------------PDGELYASGSE 287 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC----------------------CCCceeeccCC
Confidence 999999999999999999999999999998885 8999999999996 78899999999
Q ss_pred ccccceeceeecc
Q 001358 707 ENKSEVEKPLFAR 719 (1092)
Q Consensus 707 d~~i~~w~~~~~~ 719 (1092)
||+||+|.....+
T Consensus 288 DGTirlWQt~~~~ 300 (334)
T KOG0278|consen 288 DGTIRLWQTTPGK 300 (334)
T ss_pred CceEEEEEecCCC
Confidence 9999999976443
No 74
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-26 Score=225.00 Aligned_cols=287 Identities=16% Similarity=0.240 Sum_probs=238.0
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCC
Q 001358 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
+..-.+.|.++.|+++|. ++++++.|.+++|||..+|+.+++ +..+.-.|..+.|.....
T Consensus 10 f~~~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~ 69 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSN 69 (311)
T ss_pred cccCCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCc
Confidence 344566999999999998 577788899999999999998876 455677888999988888
Q ss_pred EEEEEeC--CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358 410 LLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 410 ~las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
.++.++. |.+|+.-++.+.+.++ -+.||...|++++.+|-+. .+++++.|++|++||++..++...+.....+
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p 144 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP 144 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc
Confidence 7777776 7899999999997776 7899999999999999998 8999999999999999998888877655555
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEec---CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+. +| ++.|-++|++...+.|++||++... +-.++. ......+.+.|||||++++.+.. .+.+++.|.
T Consensus 145 i~--Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDA 216 (311)
T KOG1446|consen 145 IA--AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDA 216 (311)
T ss_pred ce--eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEc
Confidence 54 45 5677888888888899999998752 333333 33557899999999999998865 667999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
-+|..+.++.++......-...+|+||++++++|+.||+|.+|++++|..+..+... ....+.++.|+|.-.++++++.
T Consensus 217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecCc
Confidence 999999999998844444467889999999999999999999999999999999875 3356889999998777776654
Q ss_pred CCeEEEEECC
Q 001358 643 ENRIKILETP 652 (1092)
Q Consensus 643 dg~i~iw~~~ 652 (1092)
.+.+|-..
T Consensus 296 --~l~fw~p~ 303 (311)
T KOG1446|consen 296 --NLVFWLPD 303 (311)
T ss_pred --eEEEEecc
Confidence 67777544
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=3.6e-27 Score=222.65 Aligned_cols=286 Identities=13% Similarity=0.162 Sum_probs=240.1
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
.+.||+.+++.+.++.+|.+|.+++.|.+..+|--.+|+.+. ++.||++.|+|++..-+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 488999999999999999999999999999999998887666 8899999999999999999 89999999999999
Q ss_pred ECCCCceeEEEecCCcceEEEeecccCCccEEEEEec-----CCeEEEEEcC-------CCCceEEecCCCCceEEEEEe
Q 001358 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYD-------SLGARVDYDAPGLGCTRMAYS 538 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-----dg~i~vwd~~-------~~~~~~~~~~~~~~i~~~~~s 538 (1092)
|+++|+++..++ ...+|..+.|++ +|.+++.... .+.|.++|++ ..++...+..+...++.+.|+
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999997 667899999965 4455555433 3569999987 445577788888999999999
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCCCeE-EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001358 539 ANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
|-+++|++|.. ++.|.+||.++|.. +..-..|. ..|+.++++++..++++++.|.+-++||..+-+.++++.
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 99999999976 56699999999854 44445555 799999999999999999999999999999999999987
Q ss_pred CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC--------------CCCeeeecccccccceeeeecCCcccccccc
Q 001358 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP--------------ESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 683 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 683 (1092)
.. .+|++.+++|-..+++.|+.....-+=... ..+.+...++|-++|++++++
T Consensus 230 te---~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh---------- 296 (327)
T KOG0643|consen 230 TE---RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH---------- 296 (327)
T ss_pred ec---ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC----------
Confidence 65 358999999988888877654333222211 224566778999999999996
Q ss_pred cCCceeecCCCCCCcccceeeccccccceecee
Q 001358 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1092)
|+|+..++|+.||.||+..++
T Consensus 297 ------------PdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 ------------PDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ------------CCCcccccCCCCceEEEEEec
Confidence 789999999999999996554
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6e-28 Score=265.21 Aligned_cols=310 Identities=16% Similarity=0.201 Sum_probs=225.5
Q ss_pred ceeEecc-cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 325 TVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 325 ~~~~~l~-~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
...+.+. .|.+.||++.||+||+ |||+|+.|+.|+||.+...+...... -+. .|... . +.. .+.+..+.
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~---~~~-~~~~~-~---~~~-~s~~~p~~ 326 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAE---GDS-SCMYF-E---YNA-NSQIEPST 326 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccc---ccc-chhhh-h---hhh-ccccCccc
Confidence 4456677 9999999999999999 69999999999999998754422100 000 00000 0 000 00011111
Q ss_pred ECC---CCC--EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358 404 WSP---DGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 404 ~sp---dg~--~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
-++ .++ ..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|++++.|++|++|++....|+
T Consensus 327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL 403 (712)
T KOG0283|consen 327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECL 403 (712)
T ss_pred cccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCccee
Confidence 111 011 11112222222222211111123344788999999999999876 6999999999999999999999
Q ss_pred EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
..|. |...|+|++|+|.. .+++++|+-||.+|+|++...+...-.. -..-|++++|.|||++.++|+. +|.++
T Consensus 404 ~~F~-HndfVTcVaFnPvD-DryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~----~G~C~ 476 (712)
T KOG0283|consen 404 KVFS-HNDFVTCVAFNPVD-DRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTF----NGYCR 476 (712)
T ss_pred eEEe-cCCeeEEEEecccC-CCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEe----ccEEE
Confidence 9996 99999999999984 5799999999999999997755544443 3468999999999999999987 66799
Q ss_pred EEeCCCCeEEEEEeeccc-----cCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358 559 EWNESEGAIKRTYQGLQL-----QHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
+|+....+....+.-+.. ....|+.+.|.|.. ..+++.+.|..|||+|.++..++..+.+......-....|+.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence 999988777665543321 12379999999754 358899999999999999999998888765555556789999
Q ss_pred CCCEEEEEeCCCeEEEEECCCC
Q 001358 633 NGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 633 ~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
||++++++++|..|++|+....
T Consensus 557 Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 557 DGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCEEEEeecCceEEEEeCCCC
Confidence 9999999999999999998654
No 77
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.3e-27 Score=235.20 Aligned_cols=282 Identities=20% Similarity=0.358 Sum_probs=233.7
Q ss_pred cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC---C
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---G 408 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd---g 408 (1092)
-|.+.|.+|... ++ .+.+|+.||.++|||.. |+.... +.||.++|.+++|--. .
T Consensus 103 ~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v~~v~~n~~~ 159 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSVAWVIKNSSS 159 (423)
T ss_pred cchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeeeEEEecCCcc
Confidence 478899999998 45 58999999999999976 454443 7899999998888543 3
Q ss_pred CEEEEEeCCCEEEEEEccCCCCcc-ceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC--------------
Q 001358 409 SLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-------------- 473 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-------------- 473 (1092)
..+++++.|.++++|.++.++... ......||...|.+++..++|. .+++|+.|.+|.||+.+
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhh
Confidence 469999999999999998876532 2223459999999999999999 89999999999999932
Q ss_pred -----------CCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCC
Q 001358 474 -----------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR 542 (1092)
Q Consensus 474 -----------~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~ 542 (1092)
++.++-++.||..+|.++.|.. ...+.+++.|.+|+.||+.+++....+... ....++..+|..+
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSK 313 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccc
Confidence 1234567889999999999965 358999999999999999999887776644 4788999999999
Q ss_pred EEEEEecCCCCceeEEEEeCCCCe---EEEEEeeccccCCceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCc-eEEEEe
Q 001358 543 RLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQ-LLTTID 617 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~s~dg~i~iwd~~~~~-~~~~~~ 617 (1092)
+|++++. +..+++||++++. ....+.+|. +.|.++.|+|...+ |++|+.|+++++||+++.+ ++..+.
T Consensus 314 Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 314 LLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred eeeecCC----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 9999987 6679999998764 356778887 89999999998654 5679999999999999877 888888
Q ss_pred CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
.|. ..|.++.|+. +.++++|+.|.+|+|+...
T Consensus 387 ~h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 387 GHN--DKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCC--ceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 774 4588899875 7789999999999998654
No 78
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.8e-26 Score=209.61 Aligned_cols=308 Identities=18% Similarity=0.224 Sum_probs=237.7
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceee-eeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.++.+|... ..|.+|+|+|.|. |.|+|+..++.+|-....-..++. .+...+ .....++ .-+.|.+.|.|.+
T Consensus 24 ~~i~~l~ds-qairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~---pp~v~~k--r~khhkgsiyc~~ 96 (350)
T KOG0641|consen 24 EAINILEDS-QAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQ---PPSVLCK--RNKHHKGSIYCTA 96 (350)
T ss_pred EEEEEecch-hheeeEEecCCCc-eEEeccCCceEEEEccccccCcccccccccC---CCeEEee--eccccCccEEEEE
Confidence 556677664 4999999999998 899999999998875433211110 000000 0001111 2456899999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccC--CCCccceEEecccccceeEEEeeCC---CCcEEEEEEe-CCCcEEEEECCCCce
Q 001358 404 WSPDGSLLGVAYSKHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTGSR 477 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~--~~~~~~~~~l~~h~~~v~~~~~s~d---~~~l~l~s~~-~d~~i~vwd~~~~~~ 477 (1092)
|||+|++||+|+.|.+|++.-.+. ......-.++.-|.+.|..++|..+ +.. +|++++ .|..|++-|-.+|+.
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence 999999999999999999876653 3333444467889999999999654 222 566654 578888999999999
Q ss_pred eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--C-----CCceEEEEEecCCCEEEEEecC
Q 001358 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--P-----GLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~-----~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
.+.+.+|.+.|.++-- =++.++++|+.|.+|++||++-..++.++.. + ...|.+++..|.|++|+++..
T Consensus 176 ~~a~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~- 251 (350)
T KOG0641|consen 176 FHALSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA- 251 (350)
T ss_pred ceeecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-
Confidence 9999999999988742 1567999999999999999998877765533 1 246899999999999999876
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceEEEEeCCCCCCCCc
Q 001358 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENP 626 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~ 626 (1092)
+....+||++.+..++.+..|. ..|.++.|+|...++++++.|..|++-|+... -.+.....| ...+.
T Consensus 252 ---dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i 323 (350)
T KOG0641|consen 252 ---DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAI 323 (350)
T ss_pred ---CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceE
Confidence 5568999999999999999888 89999999999999999999999999998642 122233333 34467
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECC
Q 001358 627 RICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
.+.|+|..--+++.+.|.++.+|.+.
T Consensus 324 ~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 324 QCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEecCccceeeeccCcceEEEeccC
Confidence 88999999889999999999999764
No 79
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=9.6e-28 Score=230.68 Aligned_cols=307 Identities=13% Similarity=0.196 Sum_probs=237.7
Q ss_pred CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccc
Q 001358 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
...+.+.+|++||.++|+|+.|.+|+|+|++..-.... +.. +
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~---~~e-----------------------------------m 153 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK---PKE-----------------------------------M 153 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc---hhh-----------------------------------h
Confidence 45689999999999999999999999999873210000 000 0
Q ss_pred eeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCc
Q 001358 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1092)
Q Consensus 702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~ 781 (1092)
..+ .+.+..++....-.|...|+.+.|.|....|++++.|+++++||+....... ..+
T Consensus 154 ~~~--------------~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr--------A~K 211 (430)
T KOG0640|consen 154 ISG--------------DTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR--------AFK 211 (430)
T ss_pred ccC--------------CcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHH--------HHH
Confidence 000 0001111111112388999999999999999999999999999987643200 011
Q ss_pred cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEe---cCCCCCeEEEEEcCCCCC
Q 001358 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTI---MPPSPTATSLAFNPHDNN 857 (1092)
Q Consensus 782 ~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~d~~ 857 (1092)
++ ....+|.++.|+|.|.+|++|.| .++++||+++.++...- ..|.+.|+++.+++ .++
T Consensus 212 ~~----------------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~ 274 (430)
T KOG0640|consen 212 VF----------------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGS 274 (430)
T ss_pred Hh----------------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-Ccc
Confidence 11 15678999999999999999997 78999999999887654 35788999999999 899
Q ss_pred EEEEEeCCCeEEEEEcCCceeeEeec-cccC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001358 858 VIAIGMDDSTILIYNARSSEVISKLE-GHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 858 ~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~-~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
+.++|+.||.|+|||--+++|+.++. +|.+ .|.+..|..+|+++.+.|.|..+++|.+.++.......=....+...
T Consensus 275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~- 353 (430)
T KOG0640|consen 275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK- 353 (430)
T ss_pred EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh-
Confidence 99999999999999999999998886 4654 78999999999999999999999999999976333221111112111
Q ss_pred CCCceEEEEecCCCEEEEE--eCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358 936 APSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 936 ~~~v~~l~~s~dg~~la~~--~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
--+...|+....+++.- ..+.+.-||..++..+..+..+|.+.+..+.-||.+.-++||+.|..+|+|--.
T Consensus 354 --~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 354 --HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred --hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 23566788888888874 446799999999999998899999999999999999999999999999999643
No 80
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=2.8e-26 Score=258.21 Aligned_cols=289 Identities=12% Similarity=0.118 Sum_probs=224.5
Q ss_pred CCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-CCCEE
Q 001358 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l 411 (1092)
|-..|.....++|+. .+++++.+..+..|+...|..+. +.............+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~-~~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCS-NTIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCC-CcEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 445788888899976 36677777888889877664321 11111111111234789999999999999 89999
Q ss_pred EEEeCCCEEEEEEccCCCC----ccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358 412 GVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1234478899999999999998643 7999999999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCc-eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001358 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
|.+++|++ ++.+|++++.||+|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|++||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999965 6789999999999999999998888787777654 45678999998988887665567889999998754
Q ss_pred -EEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001358 567 -IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 567 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
.......+. ...+....|+++++.+++++ .|+.|++||+.+++.+....... ...+..++|.|.-
T Consensus 249 ~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk~ 315 (493)
T PTZ00421 249 SPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPKW 315 (493)
T ss_pred CceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEecccc
Confidence 333333222 24566678999999999887 59999999999998877665432 2356788888843
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.2e-26 Score=260.70 Aligned_cols=284 Identities=17% Similarity=0.284 Sum_probs=248.3
Q ss_pred cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.|...+.|..|. ++ .+++|+.|++|++||..++..+.. -+.||.+.|.+++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 356688999999 55 489999999999999999987753 177999999999999889999
Q ss_pred EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEE
Q 001358 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
++|+.|.++++||..+|++.. .+.+|...|.++...+. .+++|+.|.+|++|++.++.+++.+.+|.++|+++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999998776 78899999999987553 68899999999999999999999999999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC-eEEEE
Q 001358 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRT 570 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 570 (1092)
..+ +.++++|+.||+|++||+.+.+....+.+|...|.++.+.+. ..+++++. +..|++||+.++ +++.+
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 873 569999999999999999999999999999999999987766 88999987 567999999999 99999
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001358 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 650 (1092)
+.+|. .-+..+. ..++++++++.|++|++||..+++++..+..+ +...|..+++. ...+++++.+|.+++||
T Consensus 409 l~~h~---~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 409 LQGHT---SLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred hcCCc---ccccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99988 6665444 45689999999999999999999999999874 23346666655 47899999999999999
Q ss_pred CCCCCeeeec
Q 001358 651 TPESNSVDAA 660 (1092)
Q Consensus 651 ~~~~~~~~~~ 660 (1092)
++++.....+
T Consensus 481 l~~~~~~~~l 490 (537)
T KOG0274|consen 481 LRSGTLIRTL 490 (537)
T ss_pred cccCchhhhh
Confidence 9998777655
No 82
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=3.8e-27 Score=242.01 Aligned_cols=309 Identities=18% Similarity=0.232 Sum_probs=242.7
Q ss_pred ccCCCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCc
Q 001358 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1092)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~ 398 (1092)
+..+|..+-..|++|+..|.++++.|.|.+ +++|+.|.+|++||...-..... .| ..+.......
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~f-------------r~l~P~E~h~ 216 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SF-------------RQLQPCETHQ 216 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hh-------------hccCcccccc
Confidence 345677888899999999999999999985 89999999999999986543321 11 1224456678
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCC---------ccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~---------~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
|.+++||+.|..|++.+.....+|+|-...+. +.-...-+||...++|.+|+|+.+. .++|++.||+++|
T Consensus 217 i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 217 INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRI 295 (641)
T ss_pred cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEE
Confidence 99999999999999998888999999775433 2223345689999999999999887 7999999999999
Q ss_pred EECCCCc-eeEEEe-----cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCC--ceEEEEEe
Q 001358 470 WDAVTGS-RTYSFE-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGL--GCTRMAYS 538 (1092)
Q Consensus 470 wd~~~~~-~~~~~~-----~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~--~i~~~~~s 538 (1092)
||+..-+ .++.++ +..-++++++| ++|+.+|++|+.||.|.+|+........ .-..|.. .|++++||
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 9988654 333332 23346788888 5578899999999999999976543322 2334444 89999999
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCCEEEEEe------CCCeEEEEECCCCc
Q 001358 539 ANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQ 611 (1092)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s------~dg~i~iwd~~~~~ 611 (1092)
+||++|++-+. +..+++||++.. +++....+.. ...+-+.++|+|+.+.|++|+ ..|++++||..+..
T Consensus 374 ~dg~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 374 YDGNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred cccchhhhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 99999998776 667999999865 4444444433 224567789999999999975 55789999999999
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
.+..+... ...|..+.|+|.-+.+++++.||.+++|--.
T Consensus 449 ~v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 449 TVYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred eEEEecCC--CceEEEEeecchhhheeeecCCCceEEEECc
Confidence 99998876 3468899999999999999999999997544
No 83
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.4e-26 Score=260.97 Aligned_cols=305 Identities=17% Similarity=0.234 Sum_probs=238.0
Q ss_pred ccccEEEEEEecCCcEEEEee--cCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001358 733 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
+...|.++.++|+|..+++++ .||.+++|+.+.-.. ....++..-...+.+. ..|.+.|.|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~m----~~h~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCTM----DDHDGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhheee----ccccCceeEEEE
Confidence 455689999999999999999 899999998654211 1111222111111111 149999999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEcCC------------------ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001358 811 SKNDAYLFSASG-GVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 871 (1092)
Q Consensus 811 s~dg~~l~~~sd-g~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 871 (1092)
+|||++||+|+| +.|.||+... ++.+..+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 999999999995 6789998762 346778999999999999999 89999999999999999
Q ss_pred EcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEE
Q 001358 872 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951 (1092)
Q Consensus 872 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 951 (1092)
+..+.+.+.++++|.+.|..+.|.|-|++|||-+.|++|+||++.+.... +.+..+..+.........+.|||||.+|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~--k~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE--KSITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee--EeeccchhhCCCcceeeecccCCCcCee
Confidence 99999999999999999999999999999999999999999997764322 2444444444444568899999999999
Q ss_pred EE--EeC---CcEEEEEcCCceeeeeeccCCCcCEEEEEEec--------CC-----C----EEEEEeCCCcEEEEECCC
Q 001358 952 LL--VHE---THLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC-----R----MVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 952 a~--~~d---~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg-----~----~l~t~s~Dg~i~vwd~~~ 1009 (1092)
++ +.+ .++.|.+-.+.+.-.. +.||.+++.+++|+| +| . .+|+||.|++|.||....
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 98 322 3588888766665554 668999999999998 11 1 588999999999999876
Q ss_pred CceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001358 1010 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
.+.+..+. ...+. ..++++|+| ||..|.+++.||+|.+..+.+.+.
T Consensus 314 ~RPl~vi~-------~lf~~--SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 314 PRPLFVIH-------NLFNK--SIVDMSWSP-DGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred CCchhhhh-------hhhcC--ceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHh
Confidence 66653322 11112 235889999 589999999999999999976553
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.4e-26 Score=235.97 Aligned_cols=282 Identities=15% Similarity=0.214 Sum_probs=229.8
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
..+.|.+++|+|...+=++.+..-.+.+|+...... ... +. .....+.++.|..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~----------------------~k~--~s--rFk~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV----------------------RKT--FS--RFKDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhh----------------------hhh--HH--hhccceeEEEeec
Confidence 456899999999776656666666677776432210 110 00 1456789999999
Q ss_pred CCCEEEEEeC-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEE
Q 001358 813 NDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891 (1092)
Q Consensus 813 dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1092)
||+++|+|++ |.|+|||+++...++.+.+|..++..+.|+|+++..+++|++|+.+++||+.+......+.+|++.|.|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 9999999985 999999988777788999999999999999999999999999999999999999887789999999999
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceee
Q 001358 892 LVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 970 (1092)
Q Consensus 892 l~~spd-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~ 970 (1092)
.+|+|- +.+++|||.||.|++||+.... .+......+ .+|..+.|-|.|.++|++..+.|++||+.+|...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999995 5689999999999999998743 122222222 2699999999999999999999999999966554
Q ss_pred eeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEe
Q 001358 971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1050 (1092)
Q Consensus 971 ~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~ 1050 (1092)
......|...|+|+++..|++.|++++-|+.|++||+.+.+.+..+... ++| ++++.+| |++.++.|.
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---------~pv--Lsiavs~-dd~t~viGm 298 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---------GPV--LSIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---------cce--eeEEecC-CCceEEEec
Confidence 4435559999999999999999999999999999999999999887621 123 4667777 468999999
Q ss_pred CCCcEEEEec
Q 001358 1051 TNGEVYVIEP 1060 (1092)
Q Consensus 1051 ~dg~v~~w~~ 1060 (1092)
.||.+-+-+.
T Consensus 299 snGlv~~rr~ 308 (487)
T KOG0310|consen 299 SNGLVSIRRR 308 (487)
T ss_pred ccceeeeehh
Confidence 9999877744
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.5e-26 Score=245.73 Aligned_cols=279 Identities=18% Similarity=0.267 Sum_probs=240.4
Q ss_pred ceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001358 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~ 416 (1092)
..-+.||..+ +||+|.. ..|.+|+..++..... ..-++..|+++.|+++|++||+|..
T Consensus 180 ~nlldWss~n--~laValg-~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVALG-QSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEec-ceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 4467888655 5777653 6899999999986543 2224789999999999999999999
Q ss_pred CCEEEEEEccCCCCccceEEecc-cccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE-EecCCcceEEEeec
Q 001358 417 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPH 494 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~l~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~i~~~ 494 (1092)
+|.|.|||..+.+.++ .+.+ |...|.+++|+ +. .+.+|+.|+.|..+|+...+.... +.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999877666 5667 99999999998 34 799999999999999998876655 88999999999994
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEec-CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee
Q 001358 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1092)
+|+.++++|+.|+.+.|||.........+..|...|..++|+| ....||+|+. ..|++|++||..+|..+.....
T Consensus 311 --~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 --PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred --CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 5778999999999999999999999999999999999999999 4556777765 5588999999999999888765
Q ss_pred ccccCCceEEEEEcCCCCEEEE--EeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358 574 LQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
. ..|..+.|++..+.+++ |..++.|.||+..+.+.+..+.+|. ..|..++++|||..+++|+.|.++++|++
T Consensus 387 g----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 387 G----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred C----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 3 58999999999887777 5577899999999999999888774 46999999999999999999999999998
Q ss_pred CCC
Q 001358 652 PES 654 (1092)
Q Consensus 652 ~~~ 654 (1092)
-+.
T Consensus 461 f~~ 463 (484)
T KOG0305|consen 461 FDE 463 (484)
T ss_pred cCC
Confidence 764
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.2e-25 Score=214.76 Aligned_cols=273 Identities=16% Similarity=0.187 Sum_probs=229.5
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC--CCcEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV 469 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~v 469 (1092)
+..-.+.|.++.|+++|.+|++++.|.+++|||..+|++++ ++..+...|..++|..... .++.++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence 44567899999999999999999999999999999998776 5666777899999988887 4555555 889999
Q ss_pred EECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEec
Q 001358 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
-++.+.+.++-|.||...|++++.+|.+ ..+++++.|++|++||++..++...+.....++ ++|.|.|-.+|++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence 9999999999999999999999997765 689999999999999999888877776665555 789999999998864
Q ss_pred CCCCceeEEEEeCCCC--eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCC-c
Q 001358 550 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN-P 626 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~ 626 (1092)
...|.+||+++- .+..++.-..........+.|+|+|++++.++..+.+++.|.-+|..+.++..+.....+ .
T Consensus 161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 337999999854 334444433222367899999999999999999999999999999999998876543322 4
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECCCCCeeeeccc-ccccceeeeecCCcc
Q 001358 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPIST 677 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 677 (1092)
..+|+||++++++|+.||+|.+|+++++..+..+++ +..++.++.|+|...
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~ 288 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYA 288 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCcee
Confidence 678999999999999999999999999999999988 578888888886433
No 87
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=3e-26 Score=227.28 Aligned_cols=280 Identities=15% Similarity=0.194 Sum_probs=234.2
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCC-cEEEEEEeCCCcEEEEEC
Q 001358 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~-~l~l~s~~~d~~i~vwd~ 472 (1092)
-|.+.|.++... ++.|++|+.||.+++||..+. ....+.||.++|.+++|.-... .-.+++++.|.++++|-+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk----~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK----SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCc----eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 388899999888 889999999999999999874 2336789999999888853322 115999999999999998
Q ss_pred CCCce----eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcC-------------------------CCCceE
Q 001358 473 VTGSR----TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------------------------SLGARV 523 (1092)
Q Consensus 473 ~~~~~----~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-------------------------~~~~~~ 523 (1092)
+.++. ++...||...|.++.. .+++..+++|+.|.+|++|+.. ...+..
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 87754 3444699999999987 5577899999999999999831 123455
Q ss_pred EecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEE
Q 001358 524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1092)
Q Consensus 524 ~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1092)
.+.+|..+|.++.|++ ...+++++. |.+|+.||+.++..+..+.+. ..+.++..+|..+.|++|+.|..++
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~----ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSW----DHTIKVWDLETGGLKSTLTTN----KSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecc----cceEEEEEeecccceeeeecC----cceeEeecccccceeeecCCCCcee
Confidence 6788999999999988 667778876 788999999999999888874 4899999999999999999999999
Q ss_pred EEECCCCce---EEEEeCCCCCCCCceEEEcc-CCCEEEEEeCCCeEEEEECCCCC-eeeecccccccceeeeecCCccc
Q 001358 604 IWDMNKVQL---LTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 604 iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
+||.+++.- ..++.+ |...|.++.|+| +..+|++++.|+++++||+++.. ++..+.+|.+.|.++.++
T Consensus 326 l~DPR~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~----- 398 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN----- 398 (423)
T ss_pred ecCCCCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-----
Confidence 999987642 344444 455899999999 55678999999999999999886 899999999999999997
Q ss_pred ccccccCCceeecCCCCCCcccceeeccccccceece
Q 001358 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1092)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~ 715 (1092)
++..+++|+.|.+++++..
T Consensus 399 ------------------~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 399 ------------------EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ------------------CCceEEeccCcceEEEecc
Confidence 5778999999999999874
No 88
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=8e-26 Score=217.63 Aligned_cols=276 Identities=18% Similarity=0.236 Sum_probs=220.3
Q ss_pred CCCCceEEeecCCCceEEEEEcCcCcEEEEecCCC-CceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
..+.|.+++|||....+++.||.|++||+|+++.. .... .....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 46799999999966668889999999999999873 3332 1255699999999999999999
Q ss_pred EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEE
Q 001358 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
++|+.|+.+++||+.+++.. .+..|.++|..+.|-+...+..|+|||.|++|+.||.+...++.++. ..+.++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998533 46789999999999887766689999999999999999999998886 55667777
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEe-c-CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC--eE
Q 001358 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-D-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AI 567 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~~ 567 (1092)
.. -..+++.+..++.|.+|+++........ . .-.-.+++++...|....+.|+. +|.+.+..+..+ +.
T Consensus 163 Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 54 2258999999999999999765543322 1 22336889999998888888876 455666666554 44
Q ss_pred EEEEeecccc------CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001358 568 KRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 568 ~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
--+|+.|... ...|++++|+|....|++++.||++.+||-.....+.+.+.+ ..+|.+++|+.+|.++|-+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEEe
Confidence 5567777621 235788999999999999999999999998877777666544 34699999999999887654
No 89
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=7.9e-25 Score=246.73 Aligned_cols=237 Identities=10% Similarity=0.095 Sum_probs=185.7
Q ss_pred ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCC-c----cceEEecccccceeEEEeeCCCCcEEEEEEeCCC
Q 001358 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~-~----~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~ 465 (1092)
+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. . .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg 148 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS 148 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence 7899999999999996 89999999999999999986432 1 123357799999999999999874 567999999
Q ss_pred cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE-----EEEecC
Q 001358 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-----MAYSAN 540 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~-----~~~s~d 540 (1092)
+|+|||+.+++.+..+. |...|.+++|++ +|.+|++++.|+.|++||++++.....+..|.+.+.. ..|+++
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 99999999999888776 667899999954 6789999999999999999999888888888765433 335689
Q ss_pred CCEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001358 541 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
+.++++++.++..++.|++||+++ ++.+..+..+. +.+.+......+++.++++|+.|++|++|++..+. +..+...
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~ 303 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY 303 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc
Confidence 999999887655557899999985 55555554332 12333334445568888999999999999998764 3344433
Q ss_pred CCCCCCceEEEccCC
Q 001358 620 GGLPENPRICFNKNG 634 (1092)
Q Consensus 620 ~~~~~v~~v~~s~~~ 634 (1092)
....++.+++|.|..
T Consensus 304 ~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 304 KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCCccceEEcccc
Confidence 344567889999964
No 90
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.6e-26 Score=250.51 Aligned_cols=277 Identities=14% Similarity=0.198 Sum_probs=212.3
Q ss_pred cccccEEEEEEecCCcEEEEeecCCeeEEeeecCCcc------c------------------cCc-cccc---------c
Q 001358 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL------T------------------LST-EATT---------K 777 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~------~------------------~~~-~~~~---------~ 777 (1092)
.|.+.|.++.||+||++|++++.||.|+||.+..... . ... .... .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5999999999999999999999999999999876211 0 000 0000 0
Q ss_pred cCCccccCCCCCceeeec-CCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCC
Q 001358 778 VPPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 856 (1092)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~-l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~ 856 (1092)
..-.+....... +.... ....+|...|..+.||.++-+|-+.-|.+|++|++...++++.|. |...|+|++|+|-|.
T Consensus 345 s~~~~~p~~~f~-f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFV-FSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCcccc-ccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 000001100000 00000 012369999999999988754444449999999999999999997 999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001358 857 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1092)
Q Consensus 857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1092)
+|+++|+-||.|+||++...+++.-..-+ .-|++++|+|||+..+.|+.+|.+++|+....+.....-+....+.....
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999987766655544 77999999999999999999999999999987766655555554443333
Q ss_pred CCceEEEEecCCC--EEEEEeCCcEEEEEcCCceeeeeeccCC-CcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001358 937 PSETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 937 ~~v~~l~~s~dg~--~la~~~d~~v~lwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~ 1011 (1092)
..|+++.|.|... .|+++.|..|+|||..+...+..+...+ ...-....|+.||++|++++.|..|++|+++...
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 4799999987654 7888999999999998877777754434 3445678899999999999999999999985443
No 91
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-26 Score=221.09 Aligned_cols=297 Identities=14% Similarity=0.185 Sum_probs=244.1
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+.+.|.||++.||.|+...... ++.+++.|.+.+||.+++|.++.. +.||.+.|++++|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKF 198 (481)
T ss_pred eehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEe
Confidence 45678899999999999988776 899999999999999999999986 7899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEcc------CC--------C----------------------Cc-cceEEecccccceeEE
Q 001358 405 SPDGSLLGVAYSKHIVQLYAYH------GG--------S----------------------DA-RQQLEIDAHVGNVNDL 447 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~------~~--------~----------------------~~-~~~~~l~~h~~~v~~~ 447 (1092)
++.+.++++++.|++.+||... .. + .+ -+...+.+|.+.|.++
T Consensus 199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 9999999999999999999721 10 0 01 1244688999999999
Q ss_pred EeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEec
Q 001358 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYD 526 (1092)
Q Consensus 448 ~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~ 526 (1092)
.|...|+ -+++++.|.+..+||+++|+.+..+.||....+.++-+| ..+++++.+.|.+.++||++..- .+..+.
T Consensus 279 dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 279 DWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred hhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchhhcceeeeec
Confidence 9999999 699999999999999999999999999999999988765 55799999999999999998543 345789
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe-EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001358 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1092)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1092)
+|...|+++.|..|.+ +++++. +.+|.+||+++.. .+.++... .+++.++.+..++.++.--.+..|++|
T Consensus 355 GHtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtd----S~~NRvavs~g~~iIAiPhDNRqvRlf 425 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTD----SPANRVAVSKGHPIIAIPHDNRQVRLF 425 (481)
T ss_pred ccccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecC----CccceeEeecCCceEEeccCCceEEEE
Confidence 9999999999988765 556654 7789999998754 45555543 588999999888888888889999999
Q ss_pred ECCCCceEEEE--eCCCCCCCCceEEEccCC--CEEEEEeCCCeEEEEECCCC
Q 001358 606 DMNKVQLLTTI--DAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPES 654 (1092)
Q Consensus 606 d~~~~~~~~~~--~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~ 654 (1092)
|+....+.... ...++...|.|++|..+. .-|++++.|..+.-|.+...
T Consensus 426 DlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 426 DLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99765433222 223445568899998643 35788889999999987654
No 92
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.1e-26 Score=230.51 Aligned_cols=293 Identities=14% Similarity=0.193 Sum_probs=235.3
Q ss_pred eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeee----cccccceeEEeeecCCCCcEEEE
Q 001358 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWD----IGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d----~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
.+.+..|.-.|.||+++||++ +..+++.+++|.=|++.+|....- +|. +..-..+++..- ++|...|.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~ 208 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL 208 (479)
T ss_pred ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence 366778888999999999999 589999999999999999985521 111 111122333322 4899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001358 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
+.||||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|.+|++|+++....+.++-
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence 999999999999999999999999988776 6889999999999987666 69999999999999999999999999
Q ss_pred cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
||...|.++.... -+..+.+|+.|+++++|++ ..+....+.++.+.+.+++|-.+. .+++|+. ++.|.+|++
T Consensus 284 GHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLWs~ 355 (479)
T KOG0299|consen 284 GHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALWSL 355 (479)
T ss_pred CCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEeee
Confidence 9999999987643 3345556669999999999 455666778888899999997654 5667765 677999999
Q ss_pred CCCeEEEEEeecc-ccC--------CceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceEEEEeCCCCCCCCceEE
Q 001358 563 SEGAIKRTYQGLQ-LQH--------NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 563 ~~~~~~~~~~~~~-~~~--------~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~ 629 (1092)
...+++.+....+ ... ..|++++..|..+.+++|+.+|.|++|-+.++ .++..+... ..|++++
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~ 432 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLA 432 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEE
Confidence 9988877654321 111 27899999999999999999999999999887 344444433 4589999
Q ss_pred EccCCCEEEEEe
Q 001358 630 FNKNGTLLAVIA 641 (1092)
Q Consensus 630 ~s~~~~~l~~~~ 641 (1092)
|+++|+.+++|.
T Consensus 433 f~~sgk~ivagi 444 (479)
T KOG0299|consen 433 FSNSGKRIVAGI 444 (479)
T ss_pred EccCCCEEEEec
Confidence 999999766663
No 93
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.3e-25 Score=209.91 Aligned_cols=253 Identities=16% Similarity=0.246 Sum_probs=212.2
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|...|.+++|+.+|.+||+|+.|+++.+|+++..+.... ....+|.+.|..++|.|.... .+++++.|.+|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-LVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-hcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 567999999999999999999999999999999998754432 356789999999999998766 799999999999999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+.++++...+....+.++ ++| +++|.+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence 999999998875555554 455 56788999999999999999987665544332 23566788887777766653
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
|.|+|.|.....-+.+..++.|. ....++.|+|+|+++++|+.|..+.+||++.--+.+.+.... -+|..+.|+
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld--wpVRTlSFS 240 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD--WPVRTLSFS 240 (313)
T ss_pred -CCceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc--CceEEEEec
Confidence 36789999888999999999988 888999999999999999999999999999888887776543 369999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCeeee
Q 001358 632 KNGTLLAVIANENRIKILETPESNSVDA 659 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 659 (1092)
.||++||+++.|..|-|=++++|..+..
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEE
Confidence 9999999999999999988887754433
No 94
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.8e-26 Score=213.54 Aligned_cols=285 Identities=17% Similarity=0.250 Sum_probs=226.9
Q ss_pred ceEEeecCC--CceEEEEEc-----CcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC-C
Q 001358 337 PMSMDFHPV--QHTLLLVGT-----NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G 408 (1092)
Q Consensus 337 V~~v~~spd--g~~llasg~-----~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd-g 408 (1092)
=.++.|||- ++..+|+++ ..|++.|-++..+.-+.. +.-+ .-++.+..++||+. .
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~e 73 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENHE 73 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCCc
Confidence 357889984 442333332 247899999875544432 1111 14578999999994 5
Q ss_pred CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce
Q 001358 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
..+++++.||+++|||+... -.++..++.|...|.++.|++-.++ .+++++.|++|++|+...++.++++.||...|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I 150 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI 150 (311)
T ss_pred ceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence 67888999999999996533 2455578899999999999998776 67777999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCE-EEEEecCCCCceeEEEEeCCCC-e
Q 001358 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEWNESEG-A 566 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~-l~~~~~~~~~~~~i~iwd~~~~-~ 566 (1092)
....|+|. ...++++++.||++++||++.......+..|...+.++.|+.-... +++++. ++.|+.||+++- .
T Consensus 151 y~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 151 YQAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRT 225 (311)
T ss_pred EEEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhccc
Confidence 99999987 4579999999999999999998888889999999999999986554 555544 778999999864 4
Q ss_pred EEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-ceEEEEeCCCCCCCCceEEEcc-CCCEEEEEeCC
Q 001358 567 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK-NGTLLAVIANE 643 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~d 643 (1092)
.+..+.+|. -.|..+.|+|.. ..|++++.|-++||||...+ ..+.+...| ...+..+.|++ ++.++|..+.|
T Consensus 226 pl~eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 226 PLFELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred cceeecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccc
Confidence 567777777 899999999975 56788999999999999854 344444444 34577888887 78899999999
Q ss_pred CeEEEEEC
Q 001358 644 NRIKILET 651 (1092)
Q Consensus 644 g~i~iw~~ 651 (1092)
+.++||+.
T Consensus 301 e~l~Vw~p 308 (311)
T KOG0277|consen 301 ELLYVWNP 308 (311)
T ss_pred cceeeecc
Confidence 99999984
No 95
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=216.60 Aligned_cols=313 Identities=13% Similarity=0.157 Sum_probs=234.4
Q ss_pred eeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCcccccc
Q 001358 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 736 (1092)
Q Consensus 657 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 736 (1092)
+..+++|...|++++|+ .||+++++++.|++|++|++..-....-+.++. ....+.
T Consensus 79 ~~~LKgH~~~vt~~~Fs----------------------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~--nve~dh 134 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFS----------------------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ--NVEYDH 134 (420)
T ss_pred hhhhhccCCceeeeEEc----------------------CCCceeEEEeCCceEEEEecchhhhhhhhHhhc--cccCCC
Confidence 34678999999999996 789999999999999999976432222111111 112346
Q ss_pred EEEEEEecCCcEEEEeec-CCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001358 737 ISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 737 i~~l~~s~~g~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
.+.++|+||-+.++.... ...+++|.+..... |.... ...-||-.. +. .-|...+..+-...+++
T Consensus 135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~--~~v~~D~~~--------f~-~kh~v~~i~iGiA~~~k 200 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSH--HFVHIDNLE--------FE-RKHQVDIINIGIAGNAK 200 (420)
T ss_pred ceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCc--ccccccccc--------cc-hhcccceEEEeecCCce
Confidence 788999999887766554 46899998765432 11110 111122000 10 12667778888889999
Q ss_pred EEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC---c-----eeeEeecccc
Q 001358 816 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---S-----EVISKLEGHS 886 (1092)
Q Consensus 816 ~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h~ 886 (1092)
++++++ |..|.+|++. |+.+..+......-+..++|| +|+++|+++.--.|++|.+-- | +.+..|+||.
T Consensus 201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~ 278 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ 278 (420)
T ss_pred EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence 999998 6789999998 888888877777778899999 999999999999999998732 2 2356789999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee--eeeeeecCCCC-cCCCCCceEEEEecCCCEEEEEeCCcEEEEE
Q 001358 887 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--TCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLLVHETHLAIYE 963 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~--~~~~~~~~~~~-~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd 963 (1092)
..|..++||++...++|+|.||+++|||.+-.... ..+.++..... ....+....++++|.|+.||++....+++|.
T Consensus 279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~ 358 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFA 358 (420)
T ss_pred hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence 99999999999999999999999999998642211 11222222111 1111344589999999999999999999999
Q ss_pred cCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001358 964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~ 1010 (1092)
.++|+....+...|...|+++.|++||++++|++ |..+++..-..|
T Consensus 359 se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 359 SEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred cccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 9999988887888999999999999999999996 788998864433
No 96
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-24 Score=199.28 Aligned_cols=308 Identities=14% Similarity=0.135 Sum_probs=226.7
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
....|.+++|.|.|...++++...++++-.++.-.....+...+..++.+. -...+.|.+.|.|.+|||
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~-----------~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVL-----------CKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEE-----------eeeccccCccEEEEEecC
Confidence 567899999999999999999999998876654322112222111111111 011225899999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCcee-----eEEecCCCCCeEEEEEcCC---CCCEEEEEe-CCCeEEEEEcCCceeeEee
Q 001358 813 NDAYLFSAS-GGVISLYIVMTFKT-----ILTIMPPSPTATSLAFNPH---DNNVIAIGM-DDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 813 dg~~l~~~s-dg~i~iwd~~~~~~-----~~~~~~~~~~i~~l~~s~~---d~~~lasg~-~dg~v~iwd~~~~~~~~~l 882 (1092)
+|+++++++ |.+|++..++...+ -..+.-|.+.|..++|-.+ ++.+|++++ .|..|++-|...|+....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999998 68888877654332 2356679999999999642 466788765 4678999999999999999
Q ss_pred ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEE
Q 001358 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAI 961 (1092)
Q Consensus 883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~l 961 (1092)
.||++.|.++ ++-+|-++++|+.|.+|++||+.-.......- ....+.--.+..|.+++..|.|++|+++ .|....+
T Consensus 180 sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~-~~~~~~glessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 180 SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD-NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeecc-CcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence 9999999886 34578999999999999999998644222110 1111111112479999999999999996 6788999
Q ss_pred EEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCC
Q 001358 962 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL 1041 (1092)
Q Consensus 962 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~ 1041 (1092)
||+..+..++. +..|+..|.++.|||...|+++++.|..|++=|+... +...+.....-. | .-..+.+.|+|+
T Consensus 258 ydirg~r~iq~-f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~vv~e---h--kdk~i~~rwh~~ 330 (350)
T KOG0641|consen 258 YDIRGGRMIQR-FHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIMVVAE---H--KDKAIQCRWHPQ 330 (350)
T ss_pred EEeeCCceeee-eCCCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceEEEEe---c--cCceEEEEecCc
Confidence 99999999988 4579999999999999999999999999999999854 322222111111 1 123456889997
Q ss_pred CCCEEEEEeCCCcEEEEecC
Q 001358 1042 KPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1042 ~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
| --|++.+.|.++.+|-++
T Consensus 331 d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 D-FSFISSSADKTATLWALN 349 (350)
T ss_pred c-ceeeeccCcceEEEeccC
Confidence 4 668899999999999874
No 97
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.6e-25 Score=238.86 Aligned_cols=284 Identities=18% Similarity=0.296 Sum_probs=242.0
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEE-EE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VV 403 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~-l~ 403 (1092)
.+.+.|.||+..|..+++.++. .++++|.||++++|+-..++.+.+. .+.+|.+-|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~-----------------~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETH-----------------AFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccce-----------------ecccCcceeeccce
Confidence 4568899999999999998887 4889999999999998777666432 25568888877 88
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001358 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
+-+ |+-.|++|+.|.+|.+|.+.+...+. .+.+|...|.+++...++. ++|||.|.++++|- .+++...+.
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~ 137 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQ 137 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccC
Confidence 885 66679999999999999999987766 7899999999999887775 99999999999994 567778899
Q ss_pred cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+|...|.+++..+.. .++||+.|++|++|. .++...++.+|..-|+.+++-+++.+ ++|+. ++.|+.|++
T Consensus 138 gH~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~f-lScsN----Dg~Ir~w~~ 207 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHF-LSCSN----DGSIRLWDL 207 (745)
T ss_pred CcchheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCe-EeecC----CceEEEEec
Confidence 999999999886543 899999999999994 46778889999999999999888765 46654 778999998
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
+|+.+..+.+|. .-++++....++..++++++|++++||+.. .+.+.+..++. .+.++.+-++|. +++|+.
T Consensus 208 -~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 208 -DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred -cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEecc
Confidence 899999999998 899999988888999999999999999976 77788776643 478888888786 778889
Q ss_pred CCeEEEEECCCC
Q 001358 643 ENRIKILETPES 654 (1092)
Q Consensus 643 dg~i~iw~~~~~ 654 (1092)
||.||||.....
T Consensus 279 DG~VrVfT~~k~ 290 (745)
T KOG0301|consen 279 DGRVRVFTVDKD 290 (745)
T ss_pred CceEEEEEeccc
Confidence 999999987744
No 98
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-23 Score=231.93 Aligned_cols=570 Identities=12% Similarity=0.116 Sum_probs=353.7
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCc-EEEEEEeCCCcEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVW 470 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~-l~l~s~~~d~~i~vw 470 (1092)
+.|-...-..-.||+|+++++....+ .|.||...+|+++. .+.+|..++..+.+.|.... .++++++.||.|++|
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence 44444444456799999999988655 59999999998887 78899999999999987663 478899999999999
Q ss_pred ECCCCceeEEEecCCcceEEEeecc------------cCCccEEEEEecC--CeEEEEEcCCCCce-E-EecCCCCceEE
Q 001358 471 DAVTGSRTYSFEGHGAPVYSLCPHA------------KENIHFIFSISVD--GKIKAWLYDSLGAR-V-DYDAPGLGCTR 534 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~------------~~~~~~l~s~~~d--g~i~vwd~~~~~~~-~-~~~~~~~~i~~ 534 (1092)
|...+..++++..+.. +..+.+.+ ..+-..+.+.+.+ ++++-+.+.+.... . ....+. .-.+
T Consensus 88 d~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~ 165 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKS 165 (792)
T ss_pred cCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCcc
Confidence 9999999988864432 32222211 1111111111111 11111111111000 0 011111 1356
Q ss_pred EEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE-EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC--Cc
Q 001358 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQ 611 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~ 611 (1092)
+.+++.|.+...+. +..+.+|+..++.... ....+..|...+++.+++|+++++++|..||.|.+|.--. +.
T Consensus 166 I~~~~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~ 240 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD 240 (792)
T ss_pred EEEcCCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccc
Confidence 78888888877765 3348888887755111 1111222335589999999999999999999999996433 22
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeec
Q 001358 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1092)
.......|-|...|.+++|+++|.+|.+|+..+.+.+|.+.+++.. -+.
T Consensus 241 ~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq-fLP------------------------------ 289 (792)
T KOG1963|consen 241 SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ-FLP------------------------------ 289 (792)
T ss_pred cccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc-ccc------------------------------
Confidence 2222222333457999999999999999999999999999887421 111
Q ss_pred CCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccC
Q 001358 692 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 771 (1092)
Q Consensus 692 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~ 771 (1092)
. -.+.|..+.+|||+...+....|+.|.+-....-..
T Consensus 290 --------------------------------------R--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~--- 326 (792)
T KOG1963|consen 290 --------------------------------------R--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI--- 326 (792)
T ss_pred --------------------------------------c--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh---
Confidence 0 345678888999999888888898888866533211
Q ss_pred cccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC-CCEEEEEeCCeEEEEEcCCceeeEEec-----CCC--
Q 001358 772 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSASGGVISLYIVMTFKTILTIM-----PPS-- 843 (1092)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~d-g~~l~~~sdg~i~iwd~~~~~~~~~~~-----~~~-- 843 (1092)
..++.-..+.+.. . ......-.+.++++|. +..+..+-.|.|.+||+.+.+.+..+. .+.
T Consensus 327 -----k~tIsgi~~~~~~------~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~ 394 (792)
T KOG1963|consen 327 -----KSTISGIKPPTPS------T-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGD 394 (792)
T ss_pred -----hhhccCccCCCcc------c-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCc
Confidence 0011111111000 0 0013444567888884 444444457999999998877665442 122
Q ss_pred ----CCeEEEEEcCCCCCEEEEEe--------CCC--eEEEEEcCCcee----eEe-eccccCCeEEEEEcCC-C-CEEE
Q 001358 844 ----PTATSLAFNPHDNNVIAIGM--------DDS--TILIYNARSSEV----ISK-LEGHSKRVTGLVFSDA-L-NILV 902 (1092)
Q Consensus 844 ----~~i~~l~~s~~d~~~lasg~--------~dg--~v~iwd~~~~~~----~~~-l~~h~~~V~~l~~spd-g-~~l~ 902 (1092)
-.+++++.+. .|.+++|+- .|| .+++|-...... ... ...|...+...+|.+. . .+++
T Consensus 395 ~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~v 473 (792)
T KOG1963|consen 395 VNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCV 473 (792)
T ss_pred ceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeE
Confidence 2468888888 699999863 333 567887654332 222 2358887777666542 2 3899
Q ss_pred EEeCCCcEEEEEcCCCcee-----eeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCC
Q 001358 903 SSGGDAQIFVWDVDGWGIQ-----TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS 977 (1092)
Q Consensus 903 s~s~Dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h 977 (1092)
|+|.||.++||-+.+.+.. ...+.....-+. ..+++++||.||..|+++.+++|.+||..+...+.......
T Consensus 474 ta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~ 550 (792)
T KOG1963|consen 474 TASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSR 550 (792)
T ss_pred EeccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccccc
Confidence 9999999999998443211 111222221122 36899999999999999999999999998843332222222
Q ss_pred CcCEEEEEEec----CCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCC------CccCcccceEEEECCCCCCEEE
Q 001358 978 SVPISQATFSC----DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT------TSCLHVYPHAIAAHPLKPTQFA 1047 (1092)
Q Consensus 978 ~~~v~~l~fs~----dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~p~~~~~l~ 1047 (1092)
..++..++|.. ++. +.......+.+|++-+..+...+......... .....+-+..+++-+..+..+.
T Consensus 551 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~~f~vi~~~p~~~~ 628 (792)
T KOG1963|consen 551 NWPIAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGSTAFAVICWLPELLL 628 (792)
T ss_pred ccchHhHhhhcccccccc--eeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCccceEEEeecccchh
Confidence 34444444433 333 23335678999999999888744332222220 0011222222322221223333
Q ss_pred --------EEeCCCcEEEEecCCCC
Q 001358 1048 --------VGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1048 --------~~~~dg~v~~w~~~~~~ 1064 (1092)
+.+.|+.|.+|+...++
T Consensus 629 ~~k~~~~~f~~~~~ril~F~~~~pk 653 (792)
T KOG1963|consen 629 VVKSIEQIFRGRDSRILIFSGDSPK 653 (792)
T ss_pred hhhhhhhhcccccceEEEecCCCch
Confidence 77888899999887666
No 99
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=9.8e-26 Score=231.69 Aligned_cols=298 Identities=17% Similarity=0.229 Sum_probs=224.4
Q ss_pred cccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001358 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 811 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s 811 (1092)
+|...|.++++.|.|.++++|+-|..+++||++.-..+ .+- +..-.+.....|.++.||
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------~~~-----------fr~l~P~E~h~i~sl~ys 223 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------MRS-----------FRQLQPCETHQINSLQYS 223 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------chh-----------hhccCcccccccceeeec
Confidence 47888999999999999999999999999998753210 000 001111356688999999
Q ss_pred cCCCEEEEEeC-CeEEEEEcCCceeeE------------EecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce-
Q 001358 812 KNDAYLFSASG-GVISLYIVMTFKTIL------------TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE- 877 (1092)
Q Consensus 812 ~dg~~l~~~sd-g~i~iwd~~~~~~~~------------~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~- 877 (1092)
+.|..+++.+. ...+|+|-...+... .-++|...++|.+|+|.....+++++.||+++|||+...+
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 99988888874 779999976544332 2357888999999999888899999999999999998753
Q ss_pred eeEeec-----cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEE
Q 001358 878 VISKLE-----GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952 (1092)
Q Consensus 878 ~~~~l~-----~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 952 (1092)
.+..++ +-.-+++.++|++||+++|.|..||.|.+|+..+..... .+.....|.. ...|++++||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhh
Confidence 333332 244578999999999999999999999999986533222 2222222321 23699999999999999
Q ss_pred E-EeCCcEEEEEcCCcee-eeeecc-CCCcCEEEEEEecCCCEEEEEeC------CCcEEEEECCCCceEEeeccccccC
Q 001358 953 L-VHETHLAIYEAEELTC-LKQWFP-ISSVPISQATFSCDCRMVFTSFV------DGTLSIHEASNLEVQCRILSTAYLR 1023 (1092)
Q Consensus 953 ~-~~d~~v~lwd~~~~~~-~~~~~~-~h~~~v~~l~fs~dg~~l~t~s~------Dg~i~vwd~~~~~~~~~~~~~~~~~ 1023 (1092)
+ +.|+++++||+...+. +..+.. ....+-+.++||||.++|+||+. .|.+.+||..+...+.++...
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---- 456 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---- 456 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----
Confidence 9 9999999999986543 333211 12456778999999999999874 478999999999999887622
Q ss_pred CCCccCcccceEEEECCCCCCEEEEEeCCCcEEE-EecCCCC
Q 001358 1024 PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV-IEPNEPG 1064 (1092)
Q Consensus 1024 ~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~-w~~~~~~ 1064 (1092)
......+.|||. -+++.+|+.||++++ ||...+.
T Consensus 457 ------~aSvv~~~Whpk-LNQi~~gsgdG~~~vyYdp~~S~ 491 (641)
T KOG0772|consen 457 ------TASVVRCLWHPK-LNQIFAGSGDGTAHVYYDPNESI 491 (641)
T ss_pred ------CceEEEEeecch-hhheeeecCCCceEEEECccccc
Confidence 123456889994 578999999999986 5665544
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.9e-26 Score=241.49 Aligned_cols=353 Identities=17% Similarity=0.211 Sum_probs=263.1
Q ss_pred cCCCCce---EEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC
Q 001358 332 EGSSSPM---SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 332 ~h~~~V~---~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
.|...|. .+..++.+.++|.+|+.||.|++|++..-..... .+ -...+..|.+.|+.++...+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~ 85 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNG 85 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCC
Confidence 3444555 5556654444799999999999999876433211 00 011266799999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEe-eCCCCcEEEEEEeCCCcEEEEECCCC--ceeEE-----
Q 001358 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTG--SRTYS----- 480 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~-s~d~~~l~l~s~~~d~~i~vwd~~~~--~~~~~----- 480 (1092)
+.|+++|.|-+|++|+...+. -....+++.|...|.|+++ -++.. ++|+||-|+.|.+||+.+| +.+.+
T Consensus 86 ~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 86 KTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred CceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 999999999999999998873 1222267889999999999 66666 8999999999999999988 33322
Q ss_pred ---Ee-cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCcee
Q 001358 481 ---FE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1092)
Q Consensus 481 ---~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1092)
+. |+..+|++++.+ ++|..+++|+..+.+++||.++...+..+.+|...|..+..++||+++++++. +++
T Consensus 163 ~~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----Dgt 236 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGT 236 (735)
T ss_pred cccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----Cce
Confidence 23 788889999874 45679999999999999999999999999999999999999999999999986 778
Q ss_pred EEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCE
Q 001358 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1092)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1092)
|++||+...+++.++..|. ..|+++..+|+-..+++|+.||.|+.=|+.+......+-... .+|..+..+...+-
T Consensus 237 IrlWdLgqQrCl~T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~ 311 (735)
T KOG0308|consen 237 IRLWDLGQQRCLATYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNS 311 (735)
T ss_pred EEeeeccccceeeeEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCC
Confidence 9999999999999999988 779999999999999999999999999998854333332221 24677777765555
Q ss_pred EEEEeCCCeEEEEECCCCCeeeeccc-------ccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccc
Q 001358 637 LAVIANENRIKILETPESNSVDAAGV-------LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 709 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~ 709 (1092)
+-+++.|+.|+-|.......+..... ....+.+....|+...-+..+-.... .-.|.+.+++-...|.
T Consensus 312 ~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~-----mL~dkRhVlTkDa~gn 386 (735)
T KOG0308|consen 312 VWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHA-----MLNDKRHVLTKDAKGN 386 (735)
T ss_pred ceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhh-----hhcCcceEeeecCCCC
Confidence 68888999999998764322211111 11111111111211111111101111 1467889999999999
Q ss_pred cceecee
Q 001358 710 SEVEKPL 716 (1092)
Q Consensus 710 i~~w~~~ 716 (1092)
+.+||+-
T Consensus 387 v~lwDIl 393 (735)
T KOG0308|consen 387 VALWDIL 393 (735)
T ss_pred EEEEEee
Confidence 9999965
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=232.41 Aligned_cols=285 Identities=18% Similarity=0.248 Sum_probs=240.5
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|..++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 66799999999999999999999999999999998876 333447788889999999999999 789999999999999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+...+...++.||.+.|+++.|.... ..+++|+.|.+|+.||+....+..+.. ....+..++.+ +..++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 99999999999999999999986543 349999999999999999866654433 22344445544 445666655
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC--CCCCceEE
Q 001358 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC 629 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 629 (1092)
+..|+.||.++..+......+ +.|+++..++++..+++++.|.++.+.|+.+.+....+...+. ....+.+.
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~g----g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLG----GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred --ccceEEEeccCCceeeEeecC----cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 556999999999999888875 4899999999999999999999999999999998888875532 23478899
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCCeeeeccccccc--ceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
|||++.|+++|+.||.|+||++.+++....+...... |++++|+ |.|..+++++.+
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~----------------------~sG~~Llsadk~ 452 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN----------------------PSGSGLLSADKQ 452 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc----------------------CCCchhhcccCC
Confidence 9999999999999999999999999888877765554 8999997 567788889888
Q ss_pred cccceec
Q 001358 708 NKSEVEK 714 (1092)
Q Consensus 708 ~~i~~w~ 714 (1092)
+.+.+|.
T Consensus 453 ~~v~lW~ 459 (459)
T KOG0288|consen 453 KAVTLWT 459 (459)
T ss_pred cceEecC
Confidence 8888884
No 102
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=1.2e-24 Score=244.88 Aligned_cols=270 Identities=17% Similarity=0.198 Sum_probs=210.9
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCc----------cceEEecccccceeEEEeeC-CCCcEEEEEEeC
Q 001358 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD 463 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~----------~~~~~l~~h~~~v~~~~~s~-d~~~l~l~s~~~ 463 (1092)
|-..|.....++|+..+++++.+.....|+...+..+ .....+.+|.+.|.+++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3456677778888777788777777777776544321 11224779999999999999 777 7999999
Q ss_pred CCcEEEEECCCC-------ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001358 464 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1092)
Q Consensus 464 d~~i~vwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 536 (1092)
|++|++||+.++ +.+..+.+|...|.+++|++.. +.+|++++.|++|++||+.+......+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 3567889999999999998753 35899999999999999999888888888999999999
Q ss_pred EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCeEEEEECCCCc-
Q 001358 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ- 611 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~- 611 (1092)
|+|+|.+|++++. ++.|++||+++++.+..+.+|. ...+..+.|.+++..+++++ .|+.|++||+++..
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999999999976 6779999999999998888876 23355678999888888754 47999999998754
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCCeeeeccc-ccccceeeeecC
Q 001358 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP 674 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~ 674 (1092)
.+.....+. ...+....|+++++++++++ .|+.|++|++.++..+..... ...++..+++.|
T Consensus 250 p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 333333222 23455677899999999887 499999999998876655432 233455555554
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-24 Score=209.81 Aligned_cols=241 Identities=19% Similarity=0.278 Sum_probs=205.3
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC--EEEEEeCCCeEEEEEcCC
Q 001358 799 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 799 ~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~v~iwd~~~ 875 (1092)
..|...++++|+ ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ ... .|++|+.||.|.+|+...
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence 359999999998 689999998 89999999999999999999999999999998 554 899999999999999999
Q ss_pred ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe
Q 001358 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 955 (1092)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~ 955 (1092)
.+++..+++|.+.|+.++.+|.|++.++.+.|+.++.||+-+|+......+.. ..+.+.|+|.|.+++++.
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSG 187 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999877443222222 234599999999999988
Q ss_pred CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceE
Q 001358 956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035 (1092)
Q Consensus 956 d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1035 (1092)
.+.|-+|.+.+......... ..++.++.|- ++..|++|+.|+.|.+||.+++...+.+. .|...|..+.
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~i~ 256 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL--------AHENRVKDIA 256 (362)
T ss_pred ccEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee--------cchhheeeeE
Confidence 89999999988776665332 3567777775 56689999999999999999988887777 3566777665
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001358 1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 1036 ~~~~p~~~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
.--.| ++.+|++++.||.|++||+...
T Consensus 257 ~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 257 SYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEecC-CceEEEEeccCceEEEEEcccc
Confidence 54555 5789999999999999999754
No 104
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.1e-25 Score=223.75 Aligned_cols=250 Identities=21% Similarity=0.280 Sum_probs=213.3
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceE--------------Ee-cccccceeEEEeeCCCCcE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--------------EI-DAHVGNVNDLAFSAPCKQI 456 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--------------~l-~~h~~~v~~~~~s~d~~~l 456 (1092)
...|.-+|.+++++||+++..+++.+++|.=|++.+|...+... .- ++|...+.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 55799999999999999999999999999999999887431110 11 37888999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001358 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 536 (1092)
+|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|.... ..+++++.|+.|++|+++....+.++.+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 89999999999999999999999999999999999996543 5799999999999999999998889999999999998
Q ss_pred EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Q 001358 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1092)
...-++.+-+++. |.++++|++. .+....+.++. +.+.|++|-.+ ..+++|+.+|.|.+|++.+.+++.+.
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~-eesqlifrg~~---~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIP-EESQLIFRGGE---GSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred hhcccceEEeccc----cceeEEEecc-ccceeeeeCCC---CCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence 8888887777765 6779999994 33445667766 78999999865 68999999999999999999888766
Q ss_pred eCCCC----------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358 617 DAGGG----------LPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 617 ~~~~~----------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
....+ ...|++++..|...++|+|+.+|.|++|.+.++
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 43211 125788999999999999999999999998876
No 105
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=5.1e-25 Score=247.64 Aligned_cols=280 Identities=17% Similarity=0.240 Sum_probs=242.1
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC
Q 001358 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~ 473 (1092)
.+...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.++++||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 366788888888 77899999999999999999875552 3889999999999987555 79999999999999999
Q ss_pred CCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCC
Q 001358 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
+|++.+.+.+|...|.++.. ....+++|+.|.+|++|+++++..+..+.+|..+|.++..+ +.++++++.
T Consensus 280 sg~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~---- 349 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY---- 349 (537)
T ss_pred CCcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----
Confidence 99999999999999999976 34578899999999999999999999999999999999987 889999987
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEeCCCCCCCCceEEEcc
Q 001358 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
++.|.+||+.+++++..+.+|. ..|.++.+.+. +.+++|+.|++|++||+.++ +++.++..|... +..+ ..
T Consensus 350 d~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~l--~~ 421 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSSL--LL 421 (537)
T ss_pred CceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--cccc--cc
Confidence 5679999999999999999988 99999988776 89999999999999999999 899999877542 3333 34
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeccc-ccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccc
Q 001358 633 NGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1092)
Q Consensus 633 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1092)
.+++|++++.|++|++||..++..+..+.+ +...+..+... ...+++++.+++++
T Consensus 422 ~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~------------------------~~~il~s~~~~~~~ 477 (537)
T KOG0274|consen 422 RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG------------------------KEEILCSSDDGSVK 477 (537)
T ss_pred ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC------------------------cceEEEEecCCeeE
Confidence 588999999999999999999999999988 45666555443 35678899999999
Q ss_pred eeceeeccCc
Q 001358 712 VEKPLFARPS 721 (1092)
Q Consensus 712 ~w~~~~~~~~ 721 (1092)
+||+......
T Consensus 478 l~dl~~~~~~ 487 (537)
T KOG0274|consen 478 LWDLRSGTLI 487 (537)
T ss_pred EEecccCchh
Confidence 9998754433
No 106
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.2e-26 Score=225.38 Aligned_cols=293 Identities=11% Similarity=0.157 Sum_probs=233.1
Q ss_pred cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
++-+..|.||.+.|.|+|=+|..-..+|+|+.||.|+|||+.+.+++.+ +..|.+.|..++
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~ 116 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGIC 116 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEE
Confidence 4455678999999999999999844699999999999999999888775 667999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001358 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 483 (1092)
+.. ..+++++.|.+|+.|.++.. .++ ++.+ ...+..+.-+..+. .++|||.+ |.|||.....+++++.-
T Consensus 117 v~~--~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe~--i~IWD~~R~~Pv~smsw 185 (433)
T KOG0268|consen 117 VTQ--TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGEQ--IDIWDEQRDNPVSSMSW 185 (433)
T ss_pred ecc--cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCce--eeecccccCCccceeec
Confidence 987 77888999999999998873 222 3333 23456666655566 68898865 99999999999999988
Q ss_pred CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
....|.++.|+|... .+|++++.|+.|.+||++...++...... -.-..++|+|.+-.++++.. |..++.+|++
T Consensus 186 G~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~E----D~nlY~~DmR 259 (433)
T KOG0268|consen 186 GADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANE----DHNLYTYDMR 259 (433)
T ss_pred CCCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccc----cccceehhhh
Confidence 888899999988754 58888999999999999988876644322 13456899996655666543 7789999987
Q ss_pred CC-eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358 564 EG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 564 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
.- ..+..+.+|. ..|..+.|+|.|+-+++||.|.+|+||....+..-..... .....|.++.||.|.+++++|++
T Consensus 260 ~l~~p~~v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 260 NLSRPLNVHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSD 335 (433)
T ss_pred hhcccchhhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCC
Confidence 53 3455566665 8999999999999999999999999999987654332211 12235899999999999999999
Q ss_pred CCeEEEEECCCCCe
Q 001358 643 ENRIKILETPESNS 656 (1092)
Q Consensus 643 dg~i~iw~~~~~~~ 656 (1092)
|+.|++|.....+.
T Consensus 336 d~nvRlWka~Asek 349 (433)
T KOG0268|consen 336 DGNVRLWKAKASEK 349 (433)
T ss_pred Ccceeeeecchhhh
Confidence 99999998775433
No 107
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=8.6e-24 Score=221.94 Aligned_cols=217 Identities=16% Similarity=0.181 Sum_probs=163.2
Q ss_pred eeecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCCcc---ceEEecccccceeEEEeeCCCCcEEEEEEeCCC
Q 001358 390 ALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1092)
Q Consensus 390 ~~l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~---~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~ 465 (1092)
.++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|.... .-..+.+..-.|.++.|+|.... +++ .+..|
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~-s~a~g 150 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILA-SGAHG 150 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEE-eccCc
Confidence 34889999999999999 77899999999999999998543221 12223344457899999998774 344 45588
Q ss_pred cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCC-ceEEEEEecCCCE
Q 001358 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL-GCTRMAYSANGRR 543 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~-~i~~~~~s~dg~~ 543 (1092)
+++|||+.+++.+..+.+|...|.++.| +.||.+|++.+.|+.|+|||.+... .+.....|++ .-..+.|..+-.+
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~r 228 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWER 228 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhh
Confidence 9999999999999999999999999998 6789999999999999999988654 3445555554 3345677777668
Q ss_pred EEEEecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCce
Q 001358 544 LFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~ 612 (1092)
|++.+.+......|++||.+.. ..+.++.-.. ...|.---|.||.+.++. |-.+.++..+.+...+.
T Consensus 229 lisTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qP 297 (1012)
T KOG1445|consen 229 LISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQP 297 (1012)
T ss_pred hhhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEEEEEecCCCc
Confidence 8877776655677999998753 3444444333 234555578899877765 44677888888776543
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=236.86 Aligned_cols=242 Identities=21% Similarity=0.255 Sum_probs=208.0
Q ss_pred EEEEC-CCCCEEEEEeCCCEEEEEEccCCCCc---cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-
Q 001358 401 RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG- 475 (1092)
Q Consensus 401 ~l~~s-pdg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~- 475 (1092)
.+..+ |.++||.+|+.||.|++|++...... .....+..|...|+.++...+|+ .|+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 44444 46788999999999999998754331 12346788999999999999998 7999999999999999887
Q ss_pred -ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--eE--------Eec-CCCCceEEEEEecCCCE
Q 001358 476 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTRMAYSANGRR 543 (1092)
Q Consensus 476 -~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~--------~~~-~~~~~i~~~~~s~dg~~ 543 (1092)
-++.++..|...|.++++. ..+...+++|+-|+.|.+||++++.. .. .+. ++..+|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6788899999999999984 34567999999999999999997633 11 122 56678999999999988
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001358 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
+++|+. ++.+++||.++++.+..+.||. ..|..+..++||..++++|.||+|++||+...+++.++..|..
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-- 256 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-- 256 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--
Confidence 888876 4559999999999999999999 9999999999999999999999999999999999999988755
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358 624 ENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.|.++..+|+-.++.+|+.||.|..=|+.+.
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 4899999999999999999999998888764
No 109
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.2e-24 Score=207.78 Aligned_cols=274 Identities=16% Similarity=0.161 Sum_probs=214.9
Q ss_pred ecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358 392 VRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 392 l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
-...++.|.+++||| ...+++++|.|++|++|+++....+.. .....|.++|.+++|+.||. .+++|+-|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 335678999999999 566667889999999999987322222 24557999999999999998 79999999999999
Q ss_pred ECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
|+.+++ +..+..|.++|.++.|....+-..|++||.|++|++||.+...+...+..++ .++++.. -..+++++..
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata- 174 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA- 174 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec-
Confidence 999994 5667789999999999877777799999999999999999888887776655 3333322 2234455443
Q ss_pred CCCceeEEEEeCCCCeEEE-EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceEEEEeCCCC------
Q 001358 551 KEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGG------ 621 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~------ 621 (1092)
+..|.+|+++.+.... .....- .-.+++++..++....+.|+-+|.+.|..+..+ +.-.++..|..
T Consensus 175 ---~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 175 ---ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred ---CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 5559999997664332 222222 356889999999888899999999999998876 33334444432
Q ss_pred -CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccc
Q 001358 622 -LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 622 -~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
.-.|++++|+|.-..|++++.||++.+||-.....+.....+..+|++..|+..+..
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSI 307 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCE
Confidence 235788999999999999999999999999988888888999999999999855443
No 110
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.1e-24 Score=204.57 Aligned_cols=200 Identities=18% Similarity=0.234 Sum_probs=165.1
Q ss_pred CCCCeeEEEEecC-CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001358 801 SQEAVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 801 ~~~~v~~~~~s~d-g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1092)
|..+|.++.+.+- ++.+++++ |++|++|+....+.++++.+|...|...+|+|...+++++++.|+.+++||++....
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk 182 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK 182 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc
Confidence 5666666666653 33444455 899999999999999999999999999999999999999999999999999987544
Q ss_pred eEeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEE-E-Ee
Q 001358 879 ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-L-VH 955 (1092)
Q Consensus 879 ~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la-~-~~ 955 (1092)
...+..|...|.++.|+. +.+.|+||+.|+.|++||+..-+ .++..+.+|.- .|..+.|||...-|+ + +.
T Consensus 183 ~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL~gh~~---AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 183 FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFELNGHGL---AVRKVKFSPHHASLLASASY 255 (311)
T ss_pred eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceeecCCce---EEEEEecCcchhhHhhhccc
Confidence 444889999999999997 66889999999999999998743 23444456554 799999999876554 4 58
Q ss_pred CCcEEEEEcCCceeeeeeccCCCcCEEEEEEec-CCCEEEEEeCCCcEEEEEC
Q 001358 956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 956 d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
|-+++|||...+.........|+.-|..+.||+ ++.++|+++.|+.++||+-
T Consensus 256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 899999999877665555778999999999998 6789999999999999984
No 111
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=7.8e-24 Score=213.54 Aligned_cols=284 Identities=16% Similarity=0.184 Sum_probs=244.1
Q ss_pred CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..+.++...|... .+.+|+.|..+.++|..+++.+.. ++||.-.|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 4788888888744 689999999999999999998875 88999999999999999999999
Q ss_pred eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC--CcceEEEe
Q 001358 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH--GAPVYSLC 492 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~i~ 492 (1092)
+.|..|+||......... ....|.++|+.+..+|.|. +|++++.|++..+.|+++|+.+...... .-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998766443 5678999999999999999 8999999999999999999988766532 23478888
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001358 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1092)
|+| ||.+|.+|..||.+++||+........+.+|.++|..++|+.+|-+|+++.. ++.|.+||++.-+...++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 855 7789999999999999999999999999999999999999999999999986 5559999999888888887
Q ss_pred eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358 573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
... ...+.++.|.+.|.++++++.|=.|++++-.+.+.......+.+....+.+.|....+++++++.|..++++.+
T Consensus 429 l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 766 45799999999999999998887788777655544433333333345789999999999999999999888754
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=4e-24 Score=215.60 Aligned_cols=281 Identities=17% Similarity=0.238 Sum_probs=241.0
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001358 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
-.+.++...|....+++|+.|.++.++|..+++.+. .++||...|+.+.|+|+.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 467788888888899999999999999999987766 7899999999999999998 79999999999999998888
Q ss_pred eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CCceEEEEEecCCCEEEEEecCCCCc
Q 001358 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
.......|..+|+.+..++ +|.||++++.||+..+.|++++......... .-.+++.+|+|||..+.++.. +
T Consensus 295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 8888899999999998866 5679999999999999999998887655543 346899999999999988875 7
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001358 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
+.|.+||+.++..+..|.+|. ++|..++|+.+|-+++++++|+.|++||++.-+...++...... .+.++.|.+.|
T Consensus 369 ~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SG 444 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSG 444 (506)
T ss_pred ceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCC
Confidence 789999999999999999988 99999999999999999999999999999999988888877654 68999999999
Q ss_pred CEEEEEeCCCeEEEEECCCC--CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccce
Q 001358 635 TLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~ 712 (1092)
.+|+.++.+=.|++++-.+. +.+..+..|.+..+++.|. ...+++++++.|..+++
T Consensus 445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg----------------------~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG----------------------EHAQYLASTSMDAILRL 502 (506)
T ss_pred CeEEeecceeEEEEEecccccceeeehhhhcccccceeeec----------------------ccceEEeeccchhheEE
Confidence 99999988767777664443 4555566666666666664 45677888888877766
Q ss_pred ec
Q 001358 713 EK 714 (1092)
Q Consensus 713 w~ 714 (1092)
+.
T Consensus 503 ~a 504 (506)
T KOG0289|consen 503 YA 504 (506)
T ss_pred ee
Confidence 54
No 113
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.2e-24 Score=231.86 Aligned_cols=275 Identities=20% Similarity=0.253 Sum_probs=237.8
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
.-+.|| ....||+|... .|++|+..++.... . ...+...|+++.|+++|. .|+.|..+|.|.|||..+.+.+.
T Consensus 181 nlldWs-s~n~laValg~-~vylW~~~s~~v~~-l--~~~~~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALGQ-SVYLWSASSGSVTE-L--CSFGEELVTSVKWSPDGS--HLAVGTSDGTVQIWDVKEQKKTR 253 (484)
T ss_pred hHhhcc-cCCeEEEEecc-eEEEEecCCCceEE-e--EecCCCceEEEEECCCCC--EEEEeecCCeEEEEehhhccccc
Confidence 347788 45577777544 59999999987433 2 223378999999999999 89999999999999999999999
Q ss_pred EEec-CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEecCCCEEEEEecCCCCceeE
Q 001358 480 SFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 480 ~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
.+.+ |...|.+++|. +..+.+|+.|+.|..+|++..+.... +..|...|..+.|++|++++++++. |+.+
T Consensus 254 ~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn----DN~~ 325 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN----DNVV 325 (484)
T ss_pred cccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC----ccce
Confidence 9999 99999999994 46899999999999999998877665 7889999999999999999999986 6779
Q ss_pred EEEeCCCCeEEEEEeeccccCCceEEEEEcCCC-CEEEE--EeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001358 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
.|||......+..+..|. ..|.+++|+|-. ..|++ |+.|+.|++||..++..+..+... ..|..+.|++..
T Consensus 326 ~Iwd~~~~~p~~~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 326 FIWDGLSPEPKFTFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG---SQVCSLIWSKKY 399 (484)
T ss_pred EeccCCCccccEEEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC---CceeeEEEcCCC
Confidence 999998889999999988 999999999975 45566 458999999999999999988754 458999999988
Q ss_pred CEEEEE--eCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccce
Q 001358 635 TLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 635 ~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~ 712 (1092)
+-++++ ..++.|.||+..+...+..+.+|...|..++++ |||..+++++.|.++++
T Consensus 400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~S----------------------Pdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALS----------------------PDGETIVTGAADETLRF 457 (484)
T ss_pred CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEEC----------------------CCCCEEEEecccCcEEe
Confidence 766664 457899999999999999999999999999996 78999999999999999
Q ss_pred eceee
Q 001358 713 EKPLF 717 (1092)
Q Consensus 713 w~~~~ 717 (1092)
|++-.
T Consensus 458 w~~f~ 462 (484)
T KOG0305|consen 458 WNLFD 462 (484)
T ss_pred ccccC
Confidence 99653
No 114
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.3e-23 Score=203.74 Aligned_cols=272 Identities=20% Similarity=0.292 Sum_probs=216.0
Q ss_pred CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE
Q 001358 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
.+.|+.|.|+|.+.. |++++.||++++||+...+.... -.|+.++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence 679999999999985 55667999999999998765542 23899999999997 567889
Q ss_pred EeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEee
Q 001358 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 493 (1092)
|+.||.|+.+|++++... .+..|..+|.|+.+++-.. .+++||.|++|++||.........+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 999999999999998654 3678999999999998777 79999999999999988766665554 3347888865
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC--CCeEEE
Q 001358 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR 569 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~~~ 569 (1092)
.+..|+.|+.|..+.+||+++......... -.-.++++++-|++.-.++++.+ |...+..+|.. ......
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSie--GRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIE--GRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeec--ceEEEEccCCchHHhhhce
Confidence 456899999999999999998776553322 23468999999988878877762 23334444443 113445
Q ss_pred EEeecccc------CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358 570 TYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 570 ~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
.|+.|... ..+|++++|+|-...+++|+.||.|.+||+.+.+.+..+... ...|..++|+.+|..||+++.
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence 56666532 247899999999999999999999999999999888887644 235899999999999999976
No 115
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.5e-21 Score=210.15 Aligned_cols=279 Identities=16% Similarity=0.218 Sum_probs=226.2
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCC-ceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCC
Q 001358 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
..|+..-+.++|.|+|. ++.+++.||.|++|+..+.. .... +.-++..|.+++.. +.
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~~--s~ 67 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIACY--SN 67 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEeec--cc
Confidence 37888999999999999 78889999999999987762 2211 22266777777664 55
Q ss_pred EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceE
Q 001358 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1092)
+|++|+.+++|.+|...+++.-. .+...+-++.+++|+.+|+ +++.||.|-.|++-+..+......+++|.++|.
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence 99999999999999999886543 2445667899999999999 899999999999999999999999999999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--------CCceEEEEEecCCCEEEEEecCCCCceeEEEEe
Q 001358 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1092)
++.++| ++.+|++.+-||.|++||++++.....+..- ...+..++|+|+|..++..+. ++.|.+|+
T Consensus 143 ~l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~ 216 (933)
T KOG1274|consen 143 QLSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYS 216 (933)
T ss_pred eeeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEc
Confidence 999955 6689999999999999999988776554332 235678999999766666654 66799999
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001358 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
..+++....+.....+ ..+..++|+|+|.||++++.||.|.|||.++-.. |.....|.+++|.|+.+.+-.-.
T Consensus 217 r~~we~~f~Lr~~~~s-s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 217 RKGWELQFKLRDKLSS-SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred cCCceeheeecccccc-cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEe
Confidence 9999998888775522 3489999999999999999999999999998222 33345689999999988776665
Q ss_pred CCCeEEEE
Q 001358 642 NENRIKIL 649 (1092)
Q Consensus 642 ~dg~i~iw 649 (1092)
..|...+|
T Consensus 290 ~~g~~~~~ 297 (933)
T KOG1274|consen 290 ALGTLGVS 297 (933)
T ss_pred eccccccC
Confidence 55555554
No 116
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.4e-23 Score=201.85 Aligned_cols=243 Identities=17% Similarity=0.246 Sum_probs=203.4
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..|.++|+++|.+ |.|+|+||.|-+|+|||+....++. .+-.|.+.|+++.|.++-..-.|++|+.||.|.+|+
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 67899999999996 8999999999999999999887666 566799999999999987433599999999999999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
...-.++.++++|.+.|+.++++|+ +++.++.+.|+.++.|++-.++.-....... ..+.+.|+|.|.+++..+.
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS--~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~-- 188 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPS--GKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGR-- 188 (362)
T ss_pred cCCeEEeeeecccccccceeEecCC--CceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEec--
Confidence 9999999999999999999999775 4788999999999999998887766554433 2344899999998888764
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE-
Q 001358 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF- 630 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~- 630 (1092)
..|-+|.+.+......+... ..+.++.|. ++..+++|++|+.|.+||..+..+...+..|. ..|..+.+
T Consensus 189 ---~~i~i~q~d~A~v~~~i~~~----~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~--~RVK~i~~~ 258 (362)
T KOG0294|consen 189 ---NKIDIYQLDNASVFREIENP----KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE--NRVKDIASY 258 (362)
T ss_pred ---cEEEEEecccHhHhhhhhcc----ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch--hheeeeEEE
Confidence 45889988877666555442 246666665 46789999999999999999988888888764 46887773
Q ss_pred -ccCCCEEEEEeCCCeEEEEECCCC
Q 001358 631 -NKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 631 -s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.|++.+|++++.||.|++||+...
T Consensus 259 ~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 259 TNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCCceEEEEeccCceEEEEEcccc
Confidence 468899999999999999999865
No 117
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.3e-25 Score=217.53 Aligned_cols=284 Identities=14% Similarity=0.225 Sum_probs=233.3
Q ss_pred EecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEE
Q 001358 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1092)
Q Consensus 436 ~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd 515 (1092)
.+.||...|.|++=+|..-. .+++|+.||.|+|||+.+..++.++..|.+.|..+++.. ..+++++.|.+|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999998622 699999999999999999999999999999999999854 5799999999999998
Q ss_pred cCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEE-
Q 001358 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL- 594 (1092)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 594 (1092)
++.. ...++.+ ...+..+.-+..+..+++||. .|.|||.....++..+.-.. ..+.++.|+|....++
T Consensus 136 ~~~~-p~~tilg-~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 136 IDGP-PLHTILG-KSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA 204 (433)
T ss_pred ccCC-cceeeec-cccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence 7763 2333322 234556666666778888865 39999999888888888765 7899999999876555
Q ss_pred EEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC-Ceeeecccccccceeeeec
Q 001358 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 673 (1092)
Q Consensus 595 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~ 673 (1092)
+++.|+.|.+||++.+.++..+...-. -+.++|+|++-.++++..|..++.+|+... +++....+|...|..+.|+
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred eeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 466999999999999999887765433 578999998888999999999999999865 6777888898888888886
Q ss_pred CCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEee
Q 001358 674 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 753 (1092)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 753 (1092)
|-|+.+++|+.|.+||||....+......-.. .-..|.++.||-|.+++++|+
T Consensus 282 ----------------------ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 282 ----------------------PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQHVFCVKYSMDSKYIISGS 334 (433)
T ss_pred ----------------------CCcchhccccccceEEEeecCCCcchhhhhHh-----hhheeeEEEEeccccEEEecC
Confidence 67889999999999999998754433332211 334688999999999999999
Q ss_pred cCCeeEEeeecC
Q 001358 754 SNGVHLMWRWPR 765 (1092)
Q Consensus 754 ~dg~i~lw~~~~ 765 (1092)
.|+.|++|.-..
T Consensus 335 dd~nvRlWka~A 346 (433)
T KOG0268|consen 335 DDGNVRLWKAKA 346 (433)
T ss_pred CCcceeeeecch
Confidence 999999998653
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.1e-24 Score=203.26 Aligned_cols=252 Identities=20% Similarity=0.328 Sum_probs=209.7
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeC--CCCcEEEEEEeCCCcEE
Q 001358 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIK 468 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~ 468 (1092)
+.+.|++.|..+...--|++||+++.|++|+|+.+..+.......+|.||.++|+.++|.. -|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 3667999999999888999999999999999999998877677889999999999999977 677 899999999999
Q ss_pred EEECCCCce--eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC---ceEEecCCCCceEEEEEecC---
Q 001358 469 VWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSAN--- 540 (1092)
Q Consensus 469 vwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~d--- 540 (1092)
||.-++|+- .+....|...|++++|.|..-|-.|++++.||.|.+.+++... .......|.-.|++++|.|-
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999887743 4566789999999999999999999999999999999988762 23345667888999999986
Q ss_pred C-----------CEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCC----CEEEEEeCCCeEE
Q 001358 541 G-----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIK 603 (1092)
Q Consensus 541 g-----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~dg~i~ 603 (1092)
| +.|++++. |+.|.+|+..+++ ..+++.+|. +.|+.++|.|.- .++++++.||++.
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 5 56888876 6779999988763 345578887 999999999974 5789999999999
Q ss_pred EEECCCC--ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358 604 IWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 604 iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
||..... ....++. +.....+..+.||..|+.|++++.|+.+.+|.-.
T Consensus 237 Iwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 9976632 1122221 1122458899999999999999999999999755
No 119
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.6e-24 Score=204.01 Aligned_cols=321 Identities=11% Similarity=0.144 Sum_probs=237.5
Q ss_pred CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcc
Q 001358 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 699 (1092)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 699 (1092)
++...|..++.......+.+++.|.+.+||.++++.++....+|.+.|.+++|+ +.+.
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh----------------------~s~~ 203 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH----------------------NSGL 203 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec----------------------cccc
Confidence 334568888887777789999999999999999999999999999888888886 4567
Q ss_pred cceeeccccccceeceeeccCccceecccCC----ccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccc
Q 001358 700 PEISVEAENKSEVEKPLFARPSECQSLLLPS----KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 775 (1092)
Q Consensus 700 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~----~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~ 775 (1092)
++++++.|++-.||....+ ...|. .+|.+.- .+.-+ |.... ..++..
T Consensus 204 L~lTaSGD~taHIW~~av~-------~~vP~~~a~~~hSsEe-E~e~s-----------De~~~---------d~d~~~- 254 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVN-------WEVPSNNAPSDHSSEE-EEEHS-----------DEHNR---------DTDSSE- 254 (481)
T ss_pred eEEEccCCcchHHHHHhhc-------CcCCCCCCCCCCCchh-hhhcc-----------ccccc---------cccccc-
Confidence 7788888888888874421 11111 0110000 00000 00000 000000
Q ss_pred cccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC
Q 001358 776 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH 854 (1092)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~ 854 (1092)
...|..+...-....+|...|.+..|-..|+.+++++ |.+..+||+++++.+..+.+|..+.+.++-+|
T Consensus 255 ---------~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp- 324 (481)
T KOG0300|consen 255 ---------KSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP- 324 (481)
T ss_pred ---------ccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-
Confidence 0111111111111225999999999999999999999 89999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCc-eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc
Q 001358 855 DNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 933 (1092)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 933 (1092)
..+++++.+.|.+.++||+... ..+..|+||++.|+++.|.-| ..+++++.|.+|+|||+..-. .++.+....
T Consensus 325 tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMR----splATIRtd- 398 (481)
T KOG0300|consen 325 TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMR----SPLATIRTD- 398 (481)
T ss_pred cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeecccc----CcceeeecC-
Confidence 8999999999999999999853 457899999999999999876 578899999999999998722 123333222
Q ss_pred CCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeee---eccCCCcCEEEEEEecCC--CEEEEEeCCCcEEEEEC
Q 001358 934 TLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQ---WFPISSVPISQATFSCDC--RMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 934 ~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~~~~~~~---~~~~h~~~v~~l~fs~dg--~~l~t~s~Dg~i~vwd~ 1007 (1092)
.++..++.+..+..||.- .+..|++||+......+. -..+|..-|+|++|+.+- .-|++++.|..+.=|++
T Consensus 399 ---S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 399 ---SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred ---CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence 358899999999999995 556799999975443322 245799999999998764 45899999999999998
Q ss_pred CCC
Q 001358 1008 SNL 1010 (1092)
Q Consensus 1008 ~~~ 1010 (1092)
...
T Consensus 476 n~p 478 (481)
T KOG0300|consen 476 NTP 478 (481)
T ss_pred ccc
Confidence 754
No 120
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=8.4e-23 Score=230.39 Aligned_cols=248 Identities=12% Similarity=0.172 Sum_probs=189.4
Q ss_pred EeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC-CCcEEEEEEeCCCcEEEEECCCCc--------eeEEEecC
Q 001358 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH 484 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~--------~~~~~~~~ 484 (1092)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|++|+.|++|+|||+.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5567889999987653 34478899999999999997 56 89999999999999997642 34567899
Q ss_pred CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC
Q 001358 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
...|.+++|+|.. ..++++++.|++|++||+++......+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 9999999997753 2356799999999999999888766665 4568999999999999998875 66799999999
Q ss_pred CeEEEEEeeccccCCce-----EEEEEcCCCCEEEEEeCCC----eEEEEECCC-CceEEEEeCCCCCCCCceEEEccCC
Q 001358 565 GAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 565 ~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~s~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
++.+..+.+|. +.+ ....|++++.++++++.++ +|++||+++ ++++..+..+.....+......++|
T Consensus 199 g~~i~tl~gH~---g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 199 QEIASSFHIHD---GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred CcEEEEEeccc---CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence 99999999887 433 2334568999999988764 799999995 6667666555443323333334568
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeecc-cccccceeeeecCC
Q 001358 635 TLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPI 675 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~ 675 (1092)
.++++|+.|+.|++|++..+.....-. .+..+..++++.|.
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 899999999999999998763222111 13445556666654
No 121
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5e-23 Score=199.35 Aligned_cols=298 Identities=13% Similarity=0.164 Sum_probs=217.4
Q ss_pred eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
.+.+|+||+++|++++||.||+ .||+++.|++|+||++..-.....+.++ ..-.-+..+.++|+
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R---------------~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIR---------------QNVEYDHPTRVVFA 141 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhh---------------ccccCCCceEEEEC
Confidence 3468899999999999999999 5999999999999999874333221111 11122356789999
Q ss_pred CCCCEEEEEe-CCCEEEEEEccCCCC---ccc------eEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC
Q 001358 406 PDGSLLGVAY-SKHIVQLYAYHGGSD---ARQ------QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 406 pdg~~las~~-~d~~i~iwd~~~~~~---~~~------~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
||-+-+++.. ...++++|.+...+. ... ..--+.|.-.|..+-...+++ ++.+++.|..|.+|++. |
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k--~imsas~dt~i~lw~lk-G 218 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK--YIMSASLDTKICLWDLK-G 218 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce--EEEEecCCCcEEEEecC-C
Confidence 9988776654 445799998753322 110 001124666777787777777 89999999999999988 9
Q ss_pred ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcC--------CCCceEEecCCCCceEEEEEecCCCEEEEE
Q 001358 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--------SLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~--------~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
+.+..+......-+..+. +|+|+++++++.---|++|..- .-...+.+.+|...|..++|+++.+++++.
T Consensus 219 q~L~~idtnq~~n~~aav--SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 219 QLLQSIDTNQSSNYDAAV--SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred ceeeeeccccccccceee--CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 999888766555555666 5688999999999999999752 223455788999999999999999999999
Q ss_pred ecCCCCceeEEEEeCCCC-------eEEEEEe--eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001358 548 GTSKEGESFLVEWNESEG-------AIKRTYQ--GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~-------~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
+. ++.+++||..-. +.++... .+.. ......+.++|+++.|+... ...+.++..++|+....++.
T Consensus 297 Sk----DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aa-g~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~ 370 (420)
T KOG2096|consen 297 SK----DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAA-GSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELED 370 (420)
T ss_pred ec----CCcEEEeeccceEecCCCchHhhcCCcchhhc-CCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHH
Confidence 86 667999997522 2222221 1111 23344899999998776644 46799999999888776653
Q ss_pred CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358 619 GGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
- +...|.+++|+++|++++++++ ..++++...
T Consensus 371 ~-h~~~Is~is~~~~g~~~atcGd-r~vrv~~nt 402 (420)
T KOG2096|consen 371 I-HSTTISSISYSSDGKYIATCGD-RYVRVIRNT 402 (420)
T ss_pred h-hcCceeeEEecCCCcEEeeecc-eeeeeecCC
Confidence 2 2245899999999999999875 677776533
No 122
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.1e-20 Score=204.41 Aligned_cols=275 Identities=12% Similarity=0.168 Sum_probs=231.2
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC-CCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
..|...-+.++|.|+|++|++++.||.|++|+.... +... .+..+...|.+++.. +. .|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEee
Confidence 368899999999999999999999999999998876 3222 333477788887764 34 699999999999999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
...++.-..+....-+++.+++ +.+|.+++.|+.|-.|++-++........+.+|..+|.++.|+|++++|++.+.
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-- 158 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-- 158 (933)
T ss_pred CCCCCccceeeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence 9988876666667788999999 557789999999999999999999999999999999999999999999999876
Q ss_pred CCceeEEEEeCCCCeEEEEEeecccc-----CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCc
Q 001358 552 EGESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1092)
+|.|++||+.++.+..++.+.... ...+..++|+|++..++..+.|+.|.+|+..+......+........+.
T Consensus 159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 777999999999888777654321 2346778999999999999999999999999999998887665555588
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccccccccc
Q 001358 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 684 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 684 (1092)
.+.|+|+|+|||+++.+|.|.|||.++.. .......|.+++|.|+...+..-..
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~----~~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDTHE----RHEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEecccch----hccccceeEEEecCCCCCeeEEEee
Confidence 99999999999999999999999999721 1445667889999888776644333
No 123
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=2.7e-23 Score=221.99 Aligned_cols=275 Identities=15% Similarity=0.213 Sum_probs=221.6
Q ss_pred ccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeE-EE
Q 001358 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FA 809 (1092)
Q Consensus 731 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~-~~ 809 (1092)
.+|...|..+++.+.. .+++++.||++++|+-..... +-...+ .++.+-|.+ ++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~----------------------l~~~~~--~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY----------------------LETHAF--EGPKGFIANSIC 65 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc----------------------ccceec--ccCcceeeccce
Confidence 4688889888876655 589999999999997432211 110111 135555555 67
Q ss_pred Eec-CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccC
Q 001358 810 LSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 887 (1092)
Q Consensus 810 ~s~-dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 887 (1092)
+.+ ++-.+++|+ |.++.+|......+...+.+|...|.++.... ++. +++|+.|.++++|.. +++...+.+|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 664 444466665 89999999999999999999999999999887 665 999999999999965 566777999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCc
Q 001358 888 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 967 (1092)
Q Consensus 888 ~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~ 967 (1092)
.|+++++-|++ .++|||.|++|++|.-.+ .++++.+|.. .|+++++-+++.+|-++.||.|++|++ +|
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g 209 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG 209 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence 99999999997 899999999999998755 7788889886 899999999999999999999999999 68
Q ss_pred eeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEE
Q 001358 968 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1047 (1092)
Q Consensus 968 ~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~ 1047 (1092)
+++.. ..+|+.-|.++....++..++++++|+++++|+.. ++.+.+. +|.. .+++ +.+-+ +.-++
T Consensus 210 e~l~~-~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPtt----siWs--a~~L~--NgDIv 274 (745)
T KOG0301|consen 210 EVLLE-MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPTT----SIWS--AKVLL--NGDIV 274 (745)
T ss_pred ceeee-eeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCcc----ceEE--EEEee--CCCEE
Confidence 88877 66899999999999999999999999999999988 5555554 2332 3443 33332 35699
Q ss_pred EEeCCCcEEEEecC
Q 001358 1048 VGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1048 ~~~~dg~v~~w~~~ 1061 (1092)
+|+.||.||||-..
T Consensus 275 vg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 275 VGGSDGRVRVFTVD 288 (745)
T ss_pred EeccCceEEEEEec
Confidence 99999999999875
No 124
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.8e-21 Score=209.65 Aligned_cols=516 Identities=16% Similarity=0.184 Sum_probs=326.8
Q ss_pred ecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCc-cEEEEEecCCeEEEEE
Q 001358 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWL 515 (1092)
Q Consensus 437 l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~vwd 515 (1092)
+.|-...-....||+|++. ++.+. +..|.||...||.++..+.+|..++.++.+.+.... .++++++.||.|++||
T Consensus 12 lgg~n~~~~~avfSnD~k~--l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd 88 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKF--LFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWD 88 (792)
T ss_pred eccccceecccccccCCcE--EEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEec
Confidence 3344444445689999994 44333 568999999999999999999999999999887664 6788999999999999
Q ss_pred cCCCCceEEecCCCCceEEEEEec---CCCEEEEEecCCCCceeEEEEeCCCCeEEE-----EEeeccc----cCCceEE
Q 001358 516 YDSLGARVDYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIKR-----TYQGLQL----QHNSVSV 583 (1092)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~---dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-----~~~~~~~----~~~~v~~ 583 (1092)
+.......++.... ++..+.+.| +-...+..+. +....+...........+ ++..+.. ....-..
T Consensus 89 ~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~--~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~ 165 (792)
T KOG1963|consen 89 WSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSV--EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS 165 (792)
T ss_pred CCCcEEEEEEecCC-ceeEEEechhHhCccceeEeec--ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence 99888777665543 233333322 1111221111 001111111111111111 1111110 0011355
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-e-CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecc
Q 001358 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-D-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 584 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
+.+++.+.+....-. ..+.+|+..++...... . ...+...+++.+++|+++++|++..||.|.+|.--.. .
T Consensus 166 I~~~~~ge~~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------~ 238 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------S 238 (792)
T ss_pred EEEcCCceEEEEEEe-eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------c
Confidence 677777766655544 56888888775511111 0 1122234789999999999999999999999974421 0
Q ss_pred cccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEE
Q 001358 662 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 741 (1092)
Q Consensus 662 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 741 (1092)
. .+-+.++|.- |...|.+++
T Consensus 239 ~-------------------------------------------~~~t~t~lHW-----------------H~~~V~~L~ 258 (792)
T KOG1963|consen 239 D-------------------------------------------DSETCTLLHW-----------------HHDEVNSLS 258 (792)
T ss_pred c-------------------------------------------ccccceEEEe-----------------cccccceeE
Confidence 0 0011111111 667899999
Q ss_pred EecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe
Q 001358 742 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 821 (1092)
Q Consensus 742 ~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s 821 (1092)
|+++|.+|++|+..|.+.+|.+..++. .. ++ .-..+|..+.+|||+.+.+...
T Consensus 259 fS~~G~~LlSGG~E~VLv~Wq~~T~~k----------------------qf---LP--RLgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 259 FSSDGAYLLSGGREGVLVLWQLETGKK----------------------QF---LP--RLGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred EecCCceEeecccceEEEEEeecCCCc----------------------cc---cc--ccCCeeEEEEEcCCCCeEEEEe
Confidence 999999999999999999998765421 11 11 2577899999999999887775
Q ss_pred -CCeEEEEEcCCceeeEEecCC-----------CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec------
Q 001358 822 -GGVISLYIVMTFKTILTIMPP-----------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------ 883 (1092)
Q Consensus 822 -dg~i~iwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~------ 883 (1092)
|+.|.+....+.....++.+. .+-.+.++++| ..+.++..+..|.|.+||+-+.+.+..+.
T Consensus 312 ~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~ 390 (792)
T KOG1963|consen 312 EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY 390 (792)
T ss_pred cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecc
Confidence 899998887666554444332 23457889999 67788888999999999998876554442
Q ss_pred -----cccCCeEEEEEcCCCCEEEEEeC--------CC--cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCC
Q 001358 884 -----GHSKRVTGLVFSDALNILVSSGG--------DA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 884 -----~h~~~V~~l~~spdg~~l~s~s~--------Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 948 (1092)
.+.-.+++++.+-.|.+++|.-. || .+++|-...........-.....|.. ..+..+.+++..
T Consensus 391 ~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~~r 468 (792)
T KOG1963|consen 391 SDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNPTR 468 (792)
T ss_pred cCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecCcc
Confidence 13345888889999999998732 33 47889887654332221122222221 123333344433
Q ss_pred C-EEEE-EeCCcEEEEEcCCce----------eeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCC-CceEEe
Q 001358 949 T-RFLL-VHETHLAIYEAEELT----------CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCR 1015 (1092)
Q Consensus 949 ~-~la~-~~d~~v~lwd~~~~~----------~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~-~~~~~~ 1015 (1092)
. ..++ +.|+.++||-....+ |... -.-|..++++++||.||..|+ ++.|++|.+||..+ .++.+.
T Consensus 469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~ 546 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI-GSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCT 546 (792)
T ss_pred cceeEEeccCCeEEEEEEecccccCcCccceEEeee-eccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhcc
Confidence 3 5555 689999999884322 2111 123689999999999997666 55788999999999 555555
Q ss_pred eccccccCCCCccCcccceEE-EECCCCCCEEEEEeCCCcEEEEecCCCCCcc
Q 001358 1016 ILSTAYLRPTTSCLHVYPHAI-AAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1067 (1092)
Q Consensus 1016 ~~~~~~~~~~~~~~~v~~~~~-~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~ 1067 (1092)
.....+. +...+. +-.+ ....+.....+.+.+|++......|
T Consensus 547 ~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 547 EGSRNWP--------IAELLFTAQTQ--NDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ccccccc--------hHhHhhhcccc--cccceeeccCceEehHhhhhhheec
Confidence 5422211 111111 1122 2344555677899999999888888
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=2.6e-23 Score=212.89 Aligned_cols=287 Identities=13% Similarity=0.175 Sum_probs=229.2
Q ss_pred cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.|.+-|.++++|...+ .+.+|+. |.|+|||+....... +....-.-....-|.++.++|||+.|
T Consensus 417 ~HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLLPDGRTL 480 (705)
T ss_pred ccCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCCCC--------------ccccccccCcccceeeeEecCCCceE
Confidence 5776888999999887 5788876 889999997542111 00000022345789999999999999
Q ss_pred EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEE
Q 001358 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
++|+.-.++.|||+.....- ...++..-.-...+++.+||.+ +.++|..||.|.|||+.....++.|+||.+.+.||
T Consensus 481 ivGGeastlsiWDLAapTpr-ikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 557 (705)
T ss_pred EeccccceeeeeeccCCCcc-hhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence 99999999999999875422 1123433444678899999999 88999999999999999999999999999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001358 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
.+ +.||..|.+|+-|.+||.||++.+........ ...|.++.+.|.+.+++++-. ++.+.+.... +.....+
T Consensus 558 di--s~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-kp~kyql 629 (705)
T KOG0639|consen 558 DI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-KPEKYQL 629 (705)
T ss_pred Ee--cCCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecC-Cccceee
Confidence 88 56889999999999999999998776655432 347889999999999999976 4446666543 3333444
Q ss_pred eeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
.-|+ ..|.++.|.+.|+++++.+.|+-+..|...-|..+...... +.|.++..+.|.+++++|+.|....+|.+
T Consensus 630 hlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 630 HLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4444 89999999999999999999999999999988877766533 46899999999999999999988888864
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=3.5e-23 Score=211.88 Aligned_cols=282 Identities=12% Similarity=0.172 Sum_probs=224.2
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
|..-|.++++|...+.+++++. |.|+|||+..... ...+...+. ....+-|+++.+.|
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~-------------------k~PvsqLdc--l~rdnyiRSckL~p 475 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN-------------------KSPVSQLDC--LNRDNYIRSCKLLP 475 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC-------------------CCccccccc--cCcccceeeeEecC
Confidence 7788889999999998877765 6899999865311 001111111 12567789999999
Q ss_pred CCCEEEEEeC-CeEEEEEcCCceee--EEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCe
Q 001358 813 NDAYLFSASG-GVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV 889 (1092)
Q Consensus 813 dg~~l~~~sd-g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 889 (1092)
||+.|++|+. .++.|||+...... ..+........+++.+| |.++.++++.||.|.|||+.+...+..|+||.+.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence 9999999986 78999999865432 33443445678899999 89999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCce
Q 001358 890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELT 968 (1092)
Q Consensus 890 ~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~~~ 968 (1092)
.||.+++||..|.||+-|.+||-||+..+.... ... +...|.++..+|.+.+|++| .++.+.|......+
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrqlq-----qhd----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ-----QHD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhhhh-----hhh----hhhhheecccCCCccceeeecccCcEEEEecCCcc
Confidence 999999999999999999999999999865222 111 12368999999999999997 45678888776444
Q ss_pred eeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEE
Q 001358 969 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1048 (1092)
Q Consensus 969 ~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~ 1048 (1092)
.-. +.-|...|.++.|++.|+++++.+.|.-+-.|...-|..+.... -.+.|.+++++++ ..+++|
T Consensus 626 kyq--lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVlsCDIS~d---dkyIVT 691 (705)
T KOG0639|consen 626 KYQ--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVLSCDISFD---DKYIVT 691 (705)
T ss_pred cee--ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcceeeeeccC---ceEEEe
Confidence 332 45689999999999999999999999999999999997764433 2456777777766 589999
Q ss_pred EeCCCcEEEEec
Q 001358 1049 GLTNGEVYVIEP 1060 (1092)
Q Consensus 1049 ~~~dg~v~~w~~ 1060 (1092)
|+.|..-.||.+
T Consensus 692 GSGdkkATVYeV 703 (705)
T KOG0639|consen 692 GSGDKKATVYEV 703 (705)
T ss_pred cCCCcceEEEEE
Confidence 999998888876
No 127
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.7e-23 Score=193.16 Aligned_cols=256 Identities=16% Similarity=0.211 Sum_probs=206.2
Q ss_pred EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp- 406 (1092)
..-.+|.+-|..+...--|+ .||+++.|++|+|+.+..+..... ...|.||+++|..++|..
T Consensus 5 ~idt~H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~l----------------l~~L~Gh~GPVwqv~wahP 67 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSKL----------------LAELTGHSGPVWKVAWAHP 67 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCcee----------------eeEecCCCCCeeEEeeccc
Confidence 34468999999999999998 489999999999999987764221 112899999999999987
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC---ceeEEEe
Q 001358 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFE 482 (1092)
Q Consensus 407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~~ 482 (1092)
-|.+||+++.||.|.||.-++| ...+..+...|...|++++|.|.+-.+.|++++.||.|.|.+.++. ...+...
T Consensus 68 k~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~ 146 (299)
T KOG1332|consen 68 KFGTILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF 146 (299)
T ss_pred ccCcEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence 8999999999999999999988 4445557778999999999999988889999999999999987654 2224456
Q ss_pred cCCcceEEEeecccCC-c-----------cEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEecCC----CEE
Q 001358 483 GHGAPVYSLCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RRL 544 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~-~-----------~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~dg----~~l 544 (1092)
.|.-.|+++++.|..- | +.|++|+.|..|+||+.+...- ...+..|...|+.++|.|.- .+|
T Consensus 147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceee
Confidence 7999999999987521 1 5799999999999999987632 23478899999999999964 468
Q ss_pred EEEecCCCCceeEEEEeCCCC--eEE-EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001358 545 FSCGTSKEGESFLVEWNESEG--AIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1092)
++|+. ++.+.||-.... ... ..+.... ..+..+.|++.|+.|++++.|+.|.+|.-.
T Consensus 227 AS~Sq----Dg~viIwt~~~e~e~wk~tll~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 227 ASCSQ----DGTVIIWTKDEEYEPWKKTLLEEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEecC----CCcEEEEEecCccCcccccccccCC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 88876 667999976521 111 1222223 679999999999999999999999999754
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=4.1e-21 Score=210.82 Aligned_cols=289 Identities=11% Similarity=0.054 Sum_probs=212.3
Q ss_pred EEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEEccC
Q 001358 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHG 427 (1092)
Q Consensus 349 llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~~ 427 (1092)
++++++.|+.|.+||+.+++.+.. +..+ ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788999999999999999886654 3333 346789999999987 5667789999999998
Q ss_pred CCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEec
Q 001358 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507 (1092)
Q Consensus 428 ~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~ 507 (1092)
++... .+..+.. +..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++++ +++.++++++.
T Consensus 63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~--~dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS--PDGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC--CCCCEEEEEec
Confidence 86544 3434433 567899999984 345566789999999999888877753 2345677774 57788888887
Q ss_pred CC-eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc----cCCceE
Q 001358 508 DG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVS 582 (1092)
Q Consensus 508 dg-~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~ 582 (1092)
++ .+.+||..+......... ......++|+|+|+++++++. .++.|++||..+++.+..+..+.. ......
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 467789877655443322 234567899999998876542 256799999999988776653210 011235
Q ss_pred EEEEcCCCCEEEE-EeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCCeeeec
Q 001358 583 VVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAA 660 (1092)
Q Consensus 583 ~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~ 660 (1092)
.+.|+|+++++++ .+.++.+.+||..+++....+... ..+.+++|+|+|++|+++ ..++.|.+||..+++.+..+
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 6889999998655 455678999999998887665432 247899999999999886 45899999999999888877
Q ss_pred ccccccceeeeec
Q 001358 661 GVLSDNLRKLSVN 673 (1092)
Q Consensus 661 ~~~~~~v~~~~~~ 673 (1092)
... ...+.++++
T Consensus 288 ~~~-~~~~~~~~~ 299 (300)
T TIGR03866 288 KVG-RLPWGVVVR 299 (300)
T ss_pred Ecc-cccceeEeC
Confidence 643 333555544
No 129
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.8e-22 Score=194.06 Aligned_cols=300 Identities=14% Similarity=0.188 Sum_probs=223.5
Q ss_pred CCCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEE
Q 001358 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1092)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~ 400 (1092)
.+|.....+|.... -.|+.||+.|. +||+|..||.|.|||+.|-..-+. +.+|..+|+
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~ 69 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPIT 69 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcc-eeeeeccCCcEEEEEccccchhhh-------------------hhcccccee
Confidence 45666667776443 78999999998 799999999999999998765543 889999999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+++||+||+.|+++|.|..|.+||+..|.+++++ ....+|+.+.|+|-.....++ +-.+..-.+-++..++....
T Consensus 70 sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h~~L 144 (405)
T KOG1273|consen 70 SLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKHSVL 144 (405)
T ss_pred EEEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEE-EEecCCcEEEEecCCceeec
Confidence 9999999999999999999999999999877643 256789999999987763444 43444455555544322111
Q ss_pred EecCCcceEEE--eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEecCCCEEEEEecCCCCceeE
Q 001358 481 FEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 481 ~~~~~~~v~~i--~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
-....+..+.. +-..++.|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|++++..+. +..|
T Consensus 145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvI 220 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVI 220 (405)
T ss_pred cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceE
Confidence 11111111111 11235677899999999999999999998888776655 68999999999999999876 7789
Q ss_pred EEEeCCCC-------eE--EEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358 558 VEWNESEG-------AI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 558 ~iwd~~~~-------~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+.|+.+.- +. .+.++..- ..-.-.+++|+.+|.++++++ ....++||....|.+++.+.+..+ .....
T Consensus 221 R~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~D 298 (405)
T KOG1273|consen 221 RTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLD 298 (405)
T ss_pred EEEehhhhcccCccCCcChhHHHHHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheee
Confidence 99987621 11 11121111 123456789999999998876 456799999999999999987654 34678
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358 628 ICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
+.|+|-...+++. ..|.++||.....
T Consensus 299 V~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 299 VNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccccceeeeeec-cCCceEEEEeecc
Confidence 8999988777777 6799999987643
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.8e-22 Score=204.16 Aligned_cols=289 Identities=15% Similarity=0.227 Sum_probs=224.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCCC
Q 001358 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 654 (1092)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~ 654 (1092)
.+.|+++.|+|....+++++.|++++||.+... ..++.+... ..+|.+.+|.|+|. .+++++....++.||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 478999999999999999999999999987643 344555443 34688999999998 8888888888888988754
Q ss_pred CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCcccc
Q 001358 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 734 (1092)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 734 (1092)
+.....+
T Consensus 291 k~~k~~~------------------------------------------------------------------------- 297 (514)
T KOG2055|consen 291 KVTKLKP------------------------------------------------------------------------- 297 (514)
T ss_pred ccccccC-------------------------------------------------------------------------
Confidence 2211000
Q ss_pred ccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001358 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1092)
Q Consensus 735 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg 814 (1092)
..|. ....+....+|+++
T Consensus 298 ---------------------------------------------------~~g~-----------e~~~~e~FeVShd~ 315 (514)
T KOG2055|consen 298 ---------------------------------------------------PYGV-----------EEKSMERFEVSHDS 315 (514)
T ss_pred ---------------------------------------------------CCCc-----------ccchhheeEecCCC
Confidence 0000 12334566778888
Q ss_pred CEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccC-CeEEE
Q 001358 815 AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-RVTGL 892 (1092)
Q Consensus 815 ~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-~V~~l 892 (1092)
++|+..+ .|.|.+....+++.+..++ -.+.|..++|+. |++.|++.+.+|.|.+||+....++.++....+ .-+++
T Consensus 316 ~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~ 393 (514)
T KOG2055|consen 316 NFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSL 393 (514)
T ss_pred CeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeee
Confidence 8888877 5888888888888888877 567899999998 889999999999999999999999988874222 23568
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCce-eeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE---eCCcEEEEEcCCce
Q 001358 893 VFSDALNILVSSGGDAQIFVWDVDGWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELT 968 (1092)
Q Consensus 893 ~~spdg~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~---~d~~v~lwd~~~~~ 968 (1092)
+.|++|.+||+||..|.|-|||.++--. ...+++.....-. ..|++++|++|+++||.+ ..+.+++-.+.+..
T Consensus 394 ~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 394 CISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT 470 (514)
T ss_pred eecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence 8889999999999999999999765211 1122333333333 379999999999999984 56789999999888
Q ss_pred eeeeeccCC--CcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358 969 CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 969 ~~~~~~~~h--~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
....|.... -+.|+|++|||.|.+|+.|..+|.|.+|.+.
T Consensus 471 VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 471 VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 877765443 5789999999999999999999999999874
No 131
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=8.5e-23 Score=208.76 Aligned_cols=264 Identities=17% Similarity=0.261 Sum_probs=211.1
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-CC
Q 001358 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 408 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg 408 (1092)
.-.|.++|+.+.+-|....++|+++..+.|.|||...-.-..... +.|. ....|.||+..=..++|++ ..
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~------~~~~---Pdl~L~gH~~eg~glsWn~~~~ 190 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS------GECR---PDLRLKGHEKEGYGLSWNRQQE 190 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc------ccCC---CceEEEeecccccccccccccc
Confidence 346888999999999998899999999999999987643322100 0011 1123888998888899999 45
Q ss_pred CEEEEEeCCCEEEEEEccCCCC----ccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC--CCceeEEEe
Q 001358 409 SLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFE 482 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~--~~~~~~~~~ 482 (1092)
-+|++++.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.++.+...
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCccccc
Confidence 6888999999999999985443 5556678899999999999998776 79999999999999999 566677889
Q ss_pred cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEE-EEecCCCCceeEEEE
Q 001358 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLF-SCGTSKEGESFLVEW 560 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~-~~~~~~~~~~~i~iw 560 (1092)
+|.++|++++|+|.. +.+||+|+.|++|.+||+++... ...+..|...|..+.|||....++ +++. ++.+.+|
T Consensus 270 ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~rl~vW 344 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRRLNVW 344 (422)
T ss_pred ccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCcEEEE
Confidence 999999999999874 67999999999999999998654 668899999999999999876554 4443 7789999
Q ss_pred eCCCCeEE-----------EEEeeccccCCceEEEEEcCCCCEEEE-EeCCCeEEEEECC
Q 001358 561 NESEGAIK-----------RTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN 608 (1092)
Q Consensus 561 d~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~ 608 (1092)
|+..-... ..+-.|..|...|..+.|+|+..++++ .++|+.+.||.+.
T Consensus 345 Dls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 345 DLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 98643222 122334444589999999999988755 7899999999976
No 132
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.7e-22 Score=204.38 Aligned_cols=288 Identities=14% Similarity=0.215 Sum_probs=233.4
Q ss_pred CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCC-EEE
Q 001358 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLG 412 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~la 412 (1092)
.+.|++|.|+|.-. +|.+|+.|++++||.++........+ +.-...+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEE
Confidence 34999999999998 89999999999999997643222111 222457999999999999 889
Q ss_pred EEeCCCEEEEEEccCCCCccceEEecccc-cceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEE
Q 001358 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
+++....++.||+++.+..+ +..+.++. ..+.....|++++ +|+..|..|.|.+-...+++.+.+++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 99999999999999977543 22344554 3577888999999 89999999999999999999999987 66789999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-ceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC------
Q 001358 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------ 564 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~------ 564 (1092)
+|+ .+++.|++.+.+|.|.+||++...+...+...+. .-+++|.+++|.++++|+. .|.|.|||..+
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 995 5779999999999999999999988887765554 4578899999999999976 67799999653
Q ss_pred CeEEEEEeeccccCCceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCC-CCCCCCceEEEccCCCEEEEEe
Q 001358 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
.+++..+.... ..|.++.|+++.+.|+.+| ....+++-++.+......++.. .....|+|++|+|.+.++|+|.
T Consensus 425 PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 425 PKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred CCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 34455555544 6899999999999988877 5678999998887766655543 2344689999999999999999
Q ss_pred CCCeEEEEECC
Q 001358 642 NENRIKILETP 652 (1092)
Q Consensus 642 ~dg~i~iw~~~ 652 (1092)
.+|.+.+|.+.
T Consensus 502 e~grv~l~kL~ 512 (514)
T KOG2055|consen 502 EAGRVHLFKLH 512 (514)
T ss_pred CCCceeeEeec
Confidence 99999999864
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1e-20 Score=207.59 Aligned_cols=279 Identities=18% Similarity=0.237 Sum_probs=202.4
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCCeeeeccccccccee
Q 001358 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1092)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 669 (1092)
..+++++.|+.+++||+.+++.+..+..+. .+..++|+|+++.+ ++++.++.|++||..+++....+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-------- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------
Confidence 467888999999999999999888887543 35789999999876 556678899999877542211100
Q ss_pred eeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEE
Q 001358 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1092)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 749 (1092)
T Consensus 71 -------------------------------------------------------------------------------- 70 (300)
T TIGR03866 71 -------------------------------------------------------------------------------- 70 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEE
Q 001358 750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISL 827 (1092)
Q Consensus 750 ~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~i 827 (1092)
....+..++++|+++.++++. ++.+++
T Consensus 71 ---------------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 71 ---------------------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ---------------------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEE
Confidence 000123466777877665543 578999
Q ss_pred EEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE-e
Q 001358 828 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-G 905 (1092)
Q Consensus 828 wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~-s 905 (1092)
||+.+.+.+..+.. ...+.+++|+| ++.++++++.++ .+.+||..+++....+.. ...+.+++|+|++++|+.+ .
T Consensus 100 ~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 100 IDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence 99988877776653 33467899999 899999888775 567889998877665542 3346789999999988544 4
Q ss_pred CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE--EeCCcEEEEEcCCceeeeeeccCCCcCEEE
Q 001358 906 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQ 983 (1092)
Q Consensus 906 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~--~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~ 983 (1092)
.++.|++||+.+++............+.. ......++|+|||+++++ +.++.+.+||..+++.+.... +...+.+
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~ 253 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQ 253 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcce
Confidence 69999999999875433211111110000 112457899999998655 456789999999888776543 3457899
Q ss_pred EEEecCCCEEEEE-eCCCcEEEEECCCCceEEeec
Q 001358 984 ATFSCDCRMVFTS-FVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 984 l~fs~dg~~l~t~-s~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
++|+|||++|+++ +.+|.|.+||+.+++.+.++.
T Consensus 254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 9999999999876 468999999999999988886
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.6e-22 Score=205.26 Aligned_cols=293 Identities=15% Similarity=0.212 Sum_probs=230.8
Q ss_pred EEEEEcCcC-cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCC-CCcEEEEEECCCCCEEEEEeC-CCEEEEEEc
Q 001358 349 LLLVGTNVG-DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAY 425 (1092)
Q Consensus 349 llasg~~d~-~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h-~~~V~~l~~spdg~~las~~~-d~~i~iwd~ 425 (1092)
++.+++.|. ++.+||+.||....++ ++. ...-.++..- .+.|++++.. ...+.+|.+
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~y-------------------kg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i 68 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQY-------------------KGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEI 68 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEe-------------------cCcccccchhhhhh-chhheeeecccCcccccccc
Confidence 344555554 4999999999876542 111 0111111111 2467777743 457999999
Q ss_pred cCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEE
Q 001358 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 505 (1092)
Q Consensus 426 ~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~ 505 (1092)
.......+.. --.++|.+++-+|+|. +|+.|+..+.|++|.+.+|..+..+.+|-..|+++.| +.||.+|++|
T Consensus 69 ~k~~~~~q~~---v~Pg~v~al~s~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f--s~dgs~iiTg 141 (476)
T KOG0646|consen 69 LKKDQVVQYI---VLPGPVHALASSNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF--SDDGSHIITG 141 (476)
T ss_pred Cchhhhhhhc---ccccceeeeecCCCce--EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE--eCCCcEEEec
Confidence 8655444221 2456899999999998 7888879999999999999999999999999999999 5688999999
Q ss_pred ecCCeEEEEEcC---------CCCceEEecCCCCceEEEEEecCC--CEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001358 506 SVDGKIKAWLYD---------SLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 506 ~~dg~i~vwd~~---------~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
+.||.|.+|++. +..+...+..|.-+|+.+...+.| .++++++. |.++++||+..|.++.++...
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~LLlti~fp 217 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGVLLLTITFP 217 (476)
T ss_pred CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC----CceEEEEEeccceeeEEEecC
Confidence 999999999763 334566788888899999887653 57888876 778999999999999888764
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------------ceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001358 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----------------QLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
..+.+++..|.+..+++|+++|.|.+.++..- ..+..+.+|.....|+|++.+-||.+|+
T Consensus 218 ----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 218 ----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred ----CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 48999999999999999999999999876542 2334455555545899999999999999
Q ss_pred EEeCCCeEEEEECCCCCeeeecccccccceeeeecCCc
Q 001358 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 676 (1092)
+|+.||.+.|||..+.+.++++....++|+.+.+.|..
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 99999999999999999999988888999999987653
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=8.7e-22 Score=188.70 Aligned_cols=321 Identities=13% Similarity=0.192 Sum_probs=233.2
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-CC
Q 001358 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 408 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg 408 (1092)
.+.|.+.|..+...|...+++.+|+.||.|.|||++.......--+ +-+ ..|. ....--.+|.-.|..+.|-| |.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeecC
Confidence 3568899999999987666899999999999999987542110000 000 0111 12223567899999999999 77
Q ss_pred CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCC-cEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~-~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
-.+.+++-|.+++|||.++-+... .+ ...+.|.+-++||-.. .-++++|..|-.|++-|+.+|..-+++.||.+.
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~ 190 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG 190 (397)
T ss_pred ceeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence 788899999999999999864332 33 2556788888888543 226788888899999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001358 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
|.++.|+|..+ -.|++|+.||.|++||++... +..++.|..+++.
T Consensus 191 vlaV~Wsp~~e-~vLatgsaDg~irlWDiRras----------------------------------gcf~~lD~hn~k~ 235 (397)
T KOG4283|consen 191 VLAVEWSPSSE-WVLATGSADGAIRLWDIRRAS----------------------------------GCFRVLDQHNTKR 235 (397)
T ss_pred eEEEEeccCce-eEEEecCCCceEEEEEeeccc----------------------------------ceeEEeecccCcc
Confidence 99999998754 689999999999999987421 1133444443333
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC----CCCCCCceEEEccCCCEEEEEeCC
Q 001358 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----GGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
...++....|.+.|..++|+.++.++++.+.|..+++|+..+|+....-.++ .....-..+. +.+...++.--.+
T Consensus 236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~ 314 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPND 314 (397)
T ss_pred CccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecC
Confidence 3333322334489999999999999999999999999999987653322111 0000001122 3345556656667
Q ss_pred CeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceecee
Q 001358 644 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 644 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1092)
+.+.++++.++..+..+..|...+.|.++. |+-+...++..|+.+..|-..
T Consensus 315 ~~lall~~~sgs~ir~l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 315 GSLALLNLLEGSFVRRLSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred CeEEEEEccCceEEEeeecccceeeEEeec----------------------CchhhhhccccCCcccccccc
Confidence 999999999999999999998888877775 566777888888888888753
No 136
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.7e-21 Score=189.11 Aligned_cols=270 Identities=14% Similarity=0.111 Sum_probs=211.2
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC
Q 001358 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
....|+++.|+|.+..|++++.||.+++||+...+... . -.|..++.+++|.++.+ +++|+.||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~---~-~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL---K-FKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh---h-eecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 57899999999999999999999999999999875433 2 25899999999998765 99999999999999999
Q ss_pred CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCc
Q 001358 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
+.... +..|..+|.++...+.. ..+++|+.|++|++||.+.......+...+ .|.++. -.|..|++++. +
T Consensus 85 ~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~--v~g~~LvVg~~----~ 154 (323)
T KOG1036|consen 85 GNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMD--VSGNRLVVGTS----D 154 (323)
T ss_pred Cccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEe--ccCCEEEEeec----C
Confidence 87654 44699999999987543 479999999999999998754444444433 666554 45677888765 5
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceEEEEeCCCC-------CC
Q 001358 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------LP 623 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 623 (1092)
..+.+||+++........... -...+.++++.|++.-+++++-||.|.+=.++.. +....+..|.. .-
T Consensus 155 r~v~iyDLRn~~~~~q~reS~-lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESS-LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ceEEEEEcccccchhhhcccc-ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 679999998765543221111 1357899999999889999999999988655544 33334444421 12
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccccccc
Q 001358 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 682 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (1092)
+|++++|+|-...|++|+.||.|.+||..+.+.+..+......|..++|+.++..++++
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence 58999999999999999999999999999999999998888889999998665555443
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.4e-22 Score=191.10 Aligned_cols=282 Identities=15% Similarity=0.222 Sum_probs=214.9
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
-.|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|++.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976444 6789999999999999999 8999999999999999999999
Q ss_pred EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC----ceEEEEEecCCCEEEEEecCCCCc
Q 001358 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
+.+. ...+|..+.|+|......+++--... -.+-++........-....+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9987 78899999999987766665544333 44445554222221111111 1223468899999999975 7
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------eE--EEEeCCCCCCCC
Q 001358 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ-------LL--TTIDAGGGLPEN 625 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~-------~~--~~~~~~~~~~~v 625 (1092)
|.+.++|..+-+++..++-.. ...|..+.++..|..++.-+.|..||.|+...-. .. +.+..--....-
T Consensus 175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 789999999999998887654 4679999999999999999999999999876311 10 111100011234
Q ss_pred ceEEEccCCCEEEEEeC-CCeEEEEECCCCCeeeeccccc-ccceeeeecCCcccccccccCCceeecCCCCCCccccee
Q 001358 626 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
.+++|+.+|.+++.++. ...++||....|..++.+.|.. .....+.+.|.... +++
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~----------------------i~s 310 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI----------------------IAS 310 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceee----------------------eee
Confidence 68999999999988775 5789999999999999999887 55666777654332 223
Q ss_pred eccccccceecee
Q 001358 704 VEAENKSEVEKPL 716 (1092)
Q Consensus 704 ~~~d~~i~~w~~~ 716 (1092)
- ..|.+.+|...
T Consensus 311 i-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 311 I-ASGVVYIWAVV 322 (405)
T ss_pred c-cCCceEEEEee
Confidence 2 56889999854
No 138
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=1e-20 Score=200.14 Aligned_cols=450 Identities=14% Similarity=0.143 Sum_probs=289.5
Q ss_pred ceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCce
Q 001358 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR 522 (1092)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 522 (1092)
.|..++|-|||.+++++. +..+.+||...|..++++++|.+.|+++++ +.||+.+++|+.|+.|.+|.-.....
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEE--ccCCceeccCCCceeEEEecccccce-
Confidence 799999999999744433 347999999999999999999999999999 56889999999999999996543222
Q ss_pred EEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeE
Q 001358 523 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1092)
Q Consensus 523 ~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 602 (1092)
. --.|...|.++.|+|-...|++|+-+. .-+|........+ .+. ...+.+++|..||++++.|-.+|+|
T Consensus 88 L-kYSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~K-~ks----s~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 88 L-KYSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVSK-HKS----SSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred e-eeccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHHh-hhh----heeEEEeeecCCCcEEEEeccCceE
Confidence 2 234777899999999999999998542 5678765443321 111 2468899999999999999999999
Q ss_pred EEEECCCCceEEEEeCCCCCCCCceEEEccCC-----CEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcc
Q 001358 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-----TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677 (1092)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 677 (1092)
.+-+......+..-...+...+|.+++|+|.. ..+++.....++.++.+.. +.+..-+...-.-.|+.+
T Consensus 157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisY----- 230 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISY----- 230 (1081)
T ss_pred EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCCchhhee-----
Confidence 99875444444333334556789999999953 3677777777777776653 233322222222223333
Q ss_pred cccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCe
Q 001358 678 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 757 (1092)
Q Consensus 678 ~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 757 (1092)
-++|.+++.|+.|+.+.+|..+.-. +..- ......|..++..|+++.++.|..||+
T Consensus 231 -----------------f~NGEy~LiGGsdk~L~~fTR~Gvr------LGTv-g~~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 231 -----------------FTNGEYILLGGSDKQLSLFTRDGVR------LGTV-GEQDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred -----------------ccCCcEEEEccCCCceEEEeecCeE------Eeec-cccceeEEEEEEccCCceEEEEEccCe
Confidence 3788999999999999988743111 1000 114568999999999999999999999
Q ss_pred eEEeeecCCcccc---------------------Ccc---------------------cccccCCccccCCCCCceeeec
Q 001358 758 HLMWRWPRNDLTL---------------------STE---------------------ATTKVPPRLYQPRHGPQFMVND 795 (1092)
Q Consensus 758 i~lw~~~~~~~~~---------------------~~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 795 (1092)
+-.|++-...... .+. .+....+.+|...++. .....
T Consensus 287 iACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~-~~~mh 365 (1081)
T KOG1538|consen 287 IACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSED-LSDMH 365 (1081)
T ss_pred eehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccc-cccch
Confidence 9999876543200 000 0000112222222211 00000
Q ss_pred CCCCC-CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee--------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001358 796 TTDSN-SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 866 (1092)
Q Consensus 796 l~~~~-~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~--------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg 866 (1092)
.+... -.....|--+--.+..++.+.+..+..+|...-+. ++.++.-. .|.+..-|+.|..||
T Consensus 366 Y~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~G--------GP~gREgL~vGlknG 437 (1081)
T KOG1538|consen 366 YRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIG--------GPPGREGLLVGLKNG 437 (1081)
T ss_pred hHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhc--------CCCCcceeEEEecCC
Confidence 00000 00000111111123455555566677777653211 11111111 122566788899998
Q ss_pred eEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEec
Q 001358 867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 946 (1092)
Q Consensus 867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 946 (1092)
.|.-.=+++.-++.... ....|.|+.++...+.||+..+.++..++|+.+++. .++.+ .+.+++|+.
T Consensus 438 qV~kiF~dN~~PiLl~~-~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp--------g~nSV~wNT 504 (1081)
T KOG1538|consen 438 QVLKIFVDNLFPILLLK-QATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP--------GANSVAWNT 504 (1081)
T ss_pred cEEEEEecCCchhheec-ccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC--------CCceEEeec
Confidence 76544355443333333 456799999999999999999999999999999763 23332 477899988
Q ss_pred CCCEEEE-EeCCcEEE
Q 001358 947 DQTRFLL-VHETHLAI 961 (1092)
Q Consensus 947 dg~~la~-~~d~~v~l 961 (1092)
...-+.+ +..|.+.|
T Consensus 505 ~~E~MlcfT~~g~L~V 520 (1081)
T KOG1538|consen 505 QCEDMLCFTGGGYLNV 520 (1081)
T ss_pred cccceEEEecCCceEE
Confidence 7655544 55565544
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=4.4e-21 Score=183.95 Aligned_cols=306 Identities=14% Similarity=0.174 Sum_probs=217.8
Q ss_pred cccccEEEEEEec-CCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001358 732 VKANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 732 ~~~~~i~~l~~s~-~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
.|.+.|+++.+.+ .|+++++++.||.+-+||++............ ...|+... -...+|...|..+.|
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~----------k~~c~v~~-~h~~~Hky~iss~~W 109 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA----------KHKCIVAK-QHENGHKYAISSAIW 109 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee----------heeeeccc-cCCccceeeeeeeEE
Confidence 4889999999877 68999999999999999997654211111100 01111111 112358999999999
Q ss_pred ecCC-CEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC--CCCEEEEEeCCCeEEEEEcCCceeeEeecccc
Q 001358 811 SKND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHS 886 (1092)
Q Consensus 811 s~dg-~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 886 (1092)
-|-. ..+.+++ |.++++||.++.+....|. -.+.|.+-++||- ...++|+|..|-.|++.|+.+|.....+.||.
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 8844 4445555 8999999999998888876 5567777777772 13488899999999999999999999999999
Q ss_pred CCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCce--ee-----eeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCC
Q 001358 887 KRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGI--QT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 957 (1092)
Q Consensus 887 ~~V~~l~~spdg~~-l~s~s~Dg~i~iwd~~~~~~--~~-----~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~ 957 (1092)
+.|.++.|||...+ |++|+.||.|++||+..-.. .. .+..+..+....+.+.+..++|+.||.++++ +.|.
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 99999999998765 78999999999999976310 00 0111111112223358999999999999998 8999
Q ss_pred cEEEEEcCCceeeeeecc--CCC---cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCccc
Q 001358 958 HLAIYEAEELTCLKQWFP--ISS---VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1032 (1092)
Q Consensus 958 ~v~lwd~~~~~~~~~~~~--~h~---~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1032 (1092)
.+++|+..+|+.-...+. .|. +.-..+. +.+...++---.|+++.++.+-.|..+.++.. |...+
T Consensus 269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~--------h~k~i- 338 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST--------HLKRI- 338 (397)
T ss_pred ceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec--------cccee-
Confidence 999999988764322111 121 1111133 44555555555678999999999999988872 22222
Q ss_pred ceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358 1033 PHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1033 ~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.|.++.| +=+...+|..|+.+..|-..
T Consensus 339 -~c~~~~~-~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 339 -NCAAYRP-DFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred -eEEeecC-chhhhhccccCCcccccccc
Confidence 3666777 35779999999999999873
No 140
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.5e-21 Score=199.73 Aligned_cols=225 Identities=16% Similarity=0.177 Sum_probs=190.6
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC--
Q 001358 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-- 473 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-- 473 (1092)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +++|||.||.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 3689999999999999999999999999999998877 5679999999999999999 89999999999999753
Q ss_pred -------CCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEE
Q 001358 474 -------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 474 -------~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
+-++++.|..|.-+|+++...+.+-..+++|+|.|.++++||+..+.....+..+ ..+.+++.+|-++.+++
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEe
Confidence 3467889999999999999877666679999999999999999998777666544 47899999999999999
Q ss_pred EecCCCCceeEEEEeCCC----------------CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001358 547 CGTSKEGESFLVEWNESE----------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1092)
|+. ++.|.+.++.. +..+..+.||. ....|+|++++-||..|++|+.||.|+|||+.+.
T Consensus 235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~-~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE-NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred cCC----cceEEeeehhcCCcccccccccccccccceeeeecccc-CCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 976 55677665432 23456677777 1138999999999999999999999999999999
Q ss_pred ceEEEEeCCCCCCCCceEEEccC
Q 001358 611 QLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
++++++... ..+|+.+.+.|-
T Consensus 310 Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 310 QCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHHhhh--ccccceeEeecc
Confidence 999888732 345888888663
No 141
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.1e-21 Score=203.65 Aligned_cols=322 Identities=12% Similarity=0.166 Sum_probs=244.7
Q ss_pred cccCCCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC
Q 001358 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
....+|..|...+.||++.|.|+...|.|. +||+|+.||+|+||.+.||.++++..+ .+
T Consensus 384 dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~--------------------d~ 442 (733)
T KOG0650|consen 384 DLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQF--------------------DS 442 (733)
T ss_pred hcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEee--------------------cc
Confidence 345567788899999999999999999998 699999999999999999999986442 35
Q ss_pred cEEEEEECCCCC--EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEE----EeCCCcEEEEE
Q 001358 398 SVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT----CGDDKTIKVWD 471 (1092)
Q Consensus 398 ~V~~l~~spdg~--~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s----~~~d~~i~vwd 471 (1092)
.|.|++|+|.+. .||++-... +.|-+..-|..+... .+ .. .|++ ...|+.+..|.
T Consensus 443 ~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~-----~t-----------~e--ll~~~~~~~~p~~~~~~W~ 503 (733)
T KOG0650|consen 443 EIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVG-----PT-----------KE--LLASAPNESEPDAAVVTWS 503 (733)
T ss_pred eeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhc-----ch-----------hh--hhhcCCCccCCcccceeec
Confidence 899999999664 556654444 666666555322210 00 00 1111 12355778886
Q ss_pred CCCC----ceeEEEecCCcceEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEE
Q 001358 472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1092)
Q Consensus 472 ~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 544 (1092)
-... .-++..-.|...|..+.|+. .|.+|++...+ ..|.|.++........+....+.+.++.|+|...+|
T Consensus 504 ~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~l 581 (733)
T KOG0650|consen 504 RASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYL 581 (733)
T ss_pred hhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceE
Confidence 4421 12344556999999999965 56799987664 458899998877777777777889999999999999
Q ss_pred EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEeCCCCCC
Q 001358 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLP 623 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~ 623 (1092)
++++ ...|++||+..+.+++.+.... ..|..++.+|.|..|+.|+.|+.+..+|+.-. +..+++..|. .
T Consensus 582 fVaT-----q~~vRiYdL~kqelvKkL~tg~---kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~--~ 651 (733)
T KOG0650|consen 582 FVAT-----QRSVRIYDLSKQELVKKLLTGS---KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE--K 651 (733)
T ss_pred EEEe-----ccceEEEehhHHHHHHHHhcCC---eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh--h
Confidence 8887 4569999999988887776655 68999999999999999999999999999854 4556666554 4
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECC------CC---Ceeeeccccccc----ceeeeecCCcccccccccCCceee
Q 001358 624 ENPRICFNKNGTLLAVIANENRIKILETP------ES---NSVDAAGVLSDN----LRKLSVNPISTVTGAGIANGSVSV 690 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~------~~---~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~ 690 (1092)
.+++|+|++.-.++++|+.||++.|+... .+ -++..+++|... |....|+
T Consensus 652 avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH----------------- 714 (733)
T KOG0650|consen 652 AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH----------------- 714 (733)
T ss_pred hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc-----------------
Confidence 68999999999999999999999998532 11 245566676655 5555555
Q ss_pred cCCCCCCcccceeecccccccee
Q 001358 691 NEDPKEDVKPEISVEAENKSEVE 713 (1092)
Q Consensus 691 ~~~~s~d~~~l~s~~~d~~i~~w 713 (1092)
|...++++++.||+|++|
T Consensus 715 -----P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 715 -----PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred -----CCCceEEecCCCceEEee
Confidence 667789999999999998
No 142
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=3.8e-21 Score=195.98 Aligned_cols=305 Identities=17% Similarity=0.199 Sum_probs=229.3
Q ss_pred ceeEecccCCCCceEEeecCCCc-eEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~-~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
......+-|.+.|++++|+|... .++|+|...|.|-+||+.+.+...... .++..|..+|.++.
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~ 241 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLK 241 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceE
Confidence 34456677888999999999876 799999999999999997544443211 12778999999999
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce-eEEE
Q 001358 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSF 481 (1092)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~ 481 (1092)
|+| +-..+++.|.||+|+.=|++++.. .....+..-...+..+.|+.+.. .++.+..=|...+||.+++.. ...+
T Consensus 242 F~P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~ 318 (498)
T KOG4328|consen 242 FSPANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENL 318 (498)
T ss_pred ecCCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhh
Confidence 999 567888999999999999997642 22223333445678889998888 677787778999999998655 5666
Q ss_pred ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCce----EEecCCCCceEEEEEecCCCEEEEEecCCCCceeE
Q 001358 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
.-|...|.+++++|-.. .++++++.|++.+|||++..... .....|...|.+..|||.+-.|++.+. +..|
T Consensus 319 ~lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~I 393 (498)
T KOG4328|consen 319 RLHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEI 393 (498)
T ss_pred hhhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCce
Confidence 77999999999988744 79999999999999999865433 345568889999999999888888765 6679
Q ss_pred EEEeCC----CCeEEEEEeeccccCC--ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358 558 VEWNES----EGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 558 ~iwd~~----~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
++||.. .-....++.....+.. ......|.|+.+++++|-.-..|-|+|-..++.+..+..+.......-..|+
T Consensus 394 Rv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H 473 (498)
T KOG4328|consen 394 RVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFH 473 (498)
T ss_pred EEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeec
Confidence 999983 2333333332221111 2344679999999999999999999999999888776544332222345799
Q ss_pred cCCCEEEE-EeCCCeEEEEECC
Q 001358 632 KNGTLLAV-IANENRIKILETP 652 (1092)
Q Consensus 632 ~~~~~l~~-~~~dg~i~iw~~~ 652 (1092)
|-+..+++ ++..|.|+||..+
T Consensus 474 P~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 474 PMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccceeccCCccceEEEEecC
Confidence 98774444 4557889988654
No 143
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=6.4e-20 Score=194.20 Aligned_cols=273 Identities=13% Similarity=0.147 Sum_probs=203.2
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
.|..++|-|||..++..++ ..+.|||++.|..+.+ +++|.+.|.|+|||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 8999999999987666544 6899999999998876 889999999999999999999999
Q ss_pred CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecc
Q 001358 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
.|..|.+|+..-...++ ..|.+.|.|+.|+|-.. .|+||+-. ..-+|..+..... .|...+..++.++
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~----K~kss~R~~~CsW 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS----KHKSSSRIICCSW 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH----hhhhheeEEEeee
Confidence 99999999976533232 25999999999999988 68888754 4678986554332 2333333344444
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCCceEEEEEecCCC-----EEEEEecCCCCceeEEEEeCCCCeE
Q 001358 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGR-----RLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~dg~-----~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
..||++++.|-.+|+|.+-+-. +++...+.. ...+|.+++|+|... .+++.-. ..++..+.+ +|+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~L-sG~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQL-SGKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEe-ccee
Confidence 7899999999999999987533 333333333 556899999999643 2333221 223443333 3444
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001358 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
+..-.... -...|+.+.++|.+++.|+.|+.+.+|-. .|-.+.++... ...|..++..|++++++.|+.||+|.
T Consensus 215 Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 215 IGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred ecccccCC---CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeee
Confidence 33222222 34678889999999999999999999975 45666666543 24689999999999999999999999
Q ss_pred EEECCC
Q 001358 648 ILETPE 653 (1092)
Q Consensus 648 iw~~~~ 653 (1092)
.|++..
T Consensus 289 CyNl~f 294 (1081)
T KOG1538|consen 289 CYNLIF 294 (1081)
T ss_pred hhhhHH
Confidence 998763
No 144
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=2.6e-21 Score=197.94 Aligned_cols=253 Identities=19% Similarity=0.319 Sum_probs=202.4
Q ss_pred ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCCc-------cceEEecccccceeEEEeeCCCCcEEEEEEeC
Q 001358 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA-------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~-------~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~ 463 (1092)
.-.|.+.|+.+.+-|. ...+|+.+..+.|.|||...-... .....+.+|...-..++|++.... .|++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 4569999999999995 456677788889999999754322 223368899998888999998776 7999999
Q ss_pred CCcEEEEECCCCc-------eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcC--CCCceEEecCCCCceEE
Q 001358 464 DKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--SLGARVDYDAPGLGCTR 534 (1092)
Q Consensus 464 d~~i~vwd~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~ 534 (1092)
|++|++||+.... ....+.+|...|..++|++... .++.+++.|+.+.|||.+ +.+.......|..++.+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999987542 2467789999999999998754 689999999999999999 55566678889999999
Q ss_pred EEEecCCCE-EEEEecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc
Q 001358 535 MAYSANGRR-LFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 535 ~~~s~dg~~-l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
++|+|-+.+ ||+++. +++|.+||+++. +.+.++.+|. ..|..+.|+|.. ..+++++.|+.+.+||+..-.
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 999996655 555554 777999999865 4567788887 999999999986 456678899999999987422
Q ss_pred eE------------EEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCC
Q 001358 612 LL------------TTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPE 653 (1092)
Q Consensus 612 ~~------------~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~ 653 (1092)
.. ..+...++...|..+.|+|+.. .++++++|+.+.||....
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 22 1244456677899999999765 567788999999999774
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1e-22 Score=218.32 Aligned_cols=236 Identities=17% Similarity=0.287 Sum_probs=212.6
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
...|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 44588999999987789999999999989999987654443 5889999999999999988 899999999999999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
++.++.++++.+|...+.++.|+| -+.+.++|+.|+.+++||.+...+...+.+|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 999999999999999999999866 5579999999999999999999999999999999999999999999999875
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
+..+.+||...|+....|.+|. +.+.++.|+|..-.+..|+.|+++++||+++.+.+...... ...|.+.+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn 247 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFN 247 (825)
T ss_pred --cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeec
Confidence 6789999999999999999998 89999999999888888999999999999998888776654 4569999999
Q ss_pred cCCCEEEEEeCC
Q 001358 632 KNGTLLAVIANE 643 (1092)
Q Consensus 632 ~~~~~l~~~~~d 643 (1092)
|++..+.+|...
T Consensus 248 ~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 248 PDGKIVLSGEQI 259 (825)
T ss_pred CCceeeecCchh
Confidence 999998888654
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.3e-21 Score=207.07 Aligned_cols=244 Identities=16% Similarity=0.233 Sum_probs=197.1
Q ss_pred EEEEec-CCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC-CE
Q 001358 739 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-AY 816 (1092)
Q Consensus 739 ~l~~s~-~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg-~~ 816 (1092)
.+.|.. +.++|++++.+|.|.+||+..... . .....+ .+|...+.++.|++-. .+
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-------------------n--k~l~~f--~EH~Rs~~~ldfh~tep~i 148 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIR-------------------N--KLLTVF--NEHERSANKLDFHSTEPNI 148 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCcccc-------------------c--hhhhHh--hhhccceeeeeeccCCccE
Confidence 344442 456688888899999999865210 0 000011 1499999999999865 66
Q ss_pred EEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-eeeEeeccccCCeEEEEE
Q 001358 817 LFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVF 894 (1092)
Q Consensus 817 l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~ 894 (1092)
|++|+ ||.|++||+...+...++.+....|+.++|+|..+..++++.+.|.+++||++.. ++..++.+|.++|.|+.|
T Consensus 149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 77777 8999999999999999999888999999999988999999999999999999864 577889999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE----EeCCcEEEEEcCCceee
Q 001358 895 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTCL 970 (1092)
Q Consensus 895 spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~----~~d~~v~lwd~~~~~~~ 970 (1092)
+|++.+|||||+|++|+|||..+++.....++.+. .++..+.|-|+..+.++ +.|..|+|||+...-..
T Consensus 229 hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 229 HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred cCCCceeeecCCCccEEEEeccCCCccceeEEeec-------ceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 99999999999999999999998775554455443 25899999999886544 26788999999988777
Q ss_pred eeeccCCCcCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCce
Q 001358 971 KQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 971 ~~~~~~h~~~v~~l~fs~-dg~~l~t~s~Dg~i~vwd~~~~~~ 1012 (1092)
...+..|...++.++|.. |-..+.+++.||+|..-.++++..
T Consensus 302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred ceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 777888999999999965 566888999999988666665533
No 147
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.6e-20 Score=197.07 Aligned_cols=320 Identities=15% Similarity=0.232 Sum_probs=236.1
Q ss_pred EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC--EEEEEeCCCeE
Q 001358 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAVIANENRI 646 (1092)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i 646 (1092)
..+.||. +.|.++...|.|.+|++|+.||+|+||.+.+|.++.++...+ .|.+++|+|.+. .||++..+ .+
T Consensus 394 lvyrGHt---g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~-~~ 466 (733)
T KOG0650|consen 394 LVYRGHT---GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGE-CV 466 (733)
T ss_pred eeEeccC---CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecC-ce
Confidence 4567777 999999999999999999999999999999999999998765 489999999664 45555444 35
Q ss_pred EEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceee----ccccccceeceeeccCcc
Q 001358 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV----EAENKSEVEKPLFARPSE 722 (1092)
Q Consensus 647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~----~~d~~i~~w~~~~~~~~~ 722 (1092)
.|.+..-+..+..-. ....++++ ..+..+-.|.-...+..+
T Consensus 467 ~ivnp~~G~~~e~~~-----------------------------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~ 511 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGP-----------------------------------TKELLASAPNESEPDAAVVTWSRASLDELE 511 (733)
T ss_pred EEeCccccchhhhcc-----------------------------------hhhhhhcCCCccCCcccceeechhhhhhhc
Confidence 565544331111100 00111111 122345556533221111
Q ss_pred ---ceecccCCccccccEEEEEEecCCcEEEEeecC---CeeEEeeecCCccccCcccccccCCccccCCCCCceeeecC
Q 001358 723 ---CQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 796 (1092)
Q Consensus 723 ---~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 796 (1092)
|..+ .|...|..+.|...|.+|++...+ ..+.|+++..... ... +
T Consensus 512 ~~v~~~I-----~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s----------------------Q~P--F 562 (733)
T KOG0650|consen 512 KGVCIVI-----KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS----------------------QSP--F 562 (733)
T ss_pred cceEEEE-----ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc----------------------cCc--h
Confidence 2232 277899999999999999988764 4566666544321 111 1
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001358 797 TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 797 ~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
.-..+.|.++.|+|...++++++...|+|||+..++.+..+......|..++++| .|.-|+.|+.|+.+..||+.-+
T Consensus 563 --~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 563 --RKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred --hhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccC
Confidence 1156778899999999999999999999999999888888888888999999999 8888899999999999999854
Q ss_pred -eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCc--eeeeeeeecCCCCcCC-CCCceEEEEecCCCE
Q 001358 877 -EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD--GWG--IQTCRSLQTPDGVMTL-APSETHIQFHKDQTR 950 (1092)
Q Consensus 877 -~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~--~~~--~~~~~~~~~~~~~~~~-~~~v~~l~~s~dg~~ 950 (1092)
++.+++.-|...|++++|++.-.++++|+.||++.|+--. +.- .....+++.+.+|... ...|..+.|+|..-+
T Consensus 640 skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW 719 (733)
T KOG0650|consen 640 SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW 719 (733)
T ss_pred cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce
Confidence 6778889999999999999999999999999999988421 100 0112345566666442 135788889999999
Q ss_pred EEE-EeCCcEEEE
Q 001358 951 FLL-VHETHLAIY 962 (1092)
Q Consensus 951 la~-~~d~~v~lw 962 (1092)
|.+ |.|++|++|
T Consensus 720 LfsAGAd~tirlf 732 (733)
T KOG0650|consen 720 LFSAGADGTIRLF 732 (733)
T ss_pred EEecCCCceEEee
Confidence 998 789999998
No 148
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=5.5e-20 Score=184.93 Aligned_cols=308 Identities=15% Similarity=0.156 Sum_probs=220.0
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC
Q 001358 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
.+..|+ +|..+.|.+++...+|+|+.|..|+||.++.+..-... ....-...|..|...|+++.|+|+|
T Consensus 9 ~wH~~~-pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~g 77 (434)
T KOG1009|consen 9 SWHDHE-PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDG 77 (434)
T ss_pred EecCCC-ceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCc
Confidence 334565 99999999988657999999999999999876543310 0111223488999999999999999
Q ss_pred CEEEEEeCCCEEEEEEcc--------C-----CCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC
Q 001358 409 SLLGVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~--------~-----~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
..||+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|.++++||+..|
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccc
Confidence 999999999999999877 3 122233446789999999999999999 8999999999999999999
Q ss_pred ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-------------------CCC----Cce
Q 001358 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------------APG----LGC 532 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------------~~~----~~i 532 (1092)
..+..+..|...|..++|.| -++++++-+.|...+.+.+.......... .|. .-.
T Consensus 156 ~l~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred eeEeeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 99999999999999999965 44788888888866666554332211110 011 124
Q ss_pred EEEEEecCCCEEEEEecCCC-----CceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcC------------------
Q 001358 533 TRMAYSANGRRLFSCGTSKE-----GESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDT------------------ 588 (1092)
Q Consensus 533 ~~~~~s~dg~~l~~~~~~~~-----~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~------------------ 588 (1092)
..++|+|||..+++....-+ ..+..|+++-.. .+....+.+.. .+...+.|+|
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEeccccccccccccc
Confidence 56889999999986543111 123345554331 12222333322 3444444443
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCe
Q 001358 589 AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1092)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 656 (1092)
-+-.+++++ ...|++||.++..++.....- +...++.++|++||..+++.+.||...+...+..+.
T Consensus 311 yrlvfaiAt-~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 311 YRLVFAIAT-KNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cceEEEEee-cceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 222334444 467999999998887766432 345799999999999999999999988877765543
No 149
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2e-20 Score=202.74 Aligned_cols=284 Identities=16% Similarity=0.257 Sum_probs=216.8
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCcc-ceEEeccc---ccceeEEEeeCCCCcEEEEEEeCCCcEEEEEC
Q 001358 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAH---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~-~~~~l~~h---~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 472 (1092)
....+|+..++-..|+.++.. .++||.+....... .....+.. ...+..+.|..-... +|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N-lIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN-LIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh-hheeecCCCcEEEEec
Confidence 456678888999999888665 47888776533211 11111111 123556778754444 8999999999999999
Q ss_pred CC---CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecC-CCEEEEEe
Q 001358 473 VT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN-GRRLFSCG 548 (1092)
Q Consensus 473 ~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~~~ 548 (1092)
.. .+.+..|..|...+++++|++.. ..+|++|+.||+|++||++......++......|+.+.|+|. +..++++.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 87 67778899999999999998764 369999999999999999999999888888889999999995 55666665
Q ss_pred cCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358 549 TSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
. .|.+++||++.. ++...+..|. ++|.++.|+|++.+|++||.|+.|+|||+.+.+.......+. ..++.+
T Consensus 197 d----sG~lqlWDlRqp~r~~~k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~r 268 (839)
T KOG0269|consen 197 D----SGYLQLWDLRQPDRCEKKLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGR 268 (839)
T ss_pred C----CceEEEeeccCchhHHHHhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeee
Confidence 3 678999999854 4556677777 999999999999999999999999999998765433333222 356899
Q ss_pred EEEccCCC-EEEEEe--CCCeEEEEECCCC-CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccccee
Q 001358 628 ICFNKNGT-LLAVIA--NENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 628 v~~s~~~~-~l~~~~--~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
+.|-|+.. +||+++ .|..|+|||+... -+...+..|...++.++|. +.|...+.+
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~---------------------~~d~~~l~s 327 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD---------------------SGDRINLWS 327 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc---------------------CCCceeeEe
Confidence 99999655 566554 3889999999866 4556777888888888886 345666778
Q ss_pred eccccccce
Q 001358 704 VEAENKSEV 712 (1092)
Q Consensus 704 ~~~d~~i~~ 712 (1092)
++.|+++..
T Consensus 328 ~sKD~tv~q 336 (839)
T KOG0269|consen 328 CSKDGTVLQ 336 (839)
T ss_pred ecCccHHHH
Confidence 888877644
No 150
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.8e-21 Score=208.87 Aligned_cols=239 Identities=11% Similarity=0.205 Sum_probs=214.0
Q ss_pred EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+....|+..|.|+..-..++ .+++|+.|..+-+|.+..-..+.. +.+|..+|.++.|+++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTS 81 (825)
T ss_pred hhhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcc
Confidence 45567888999999866676 799999999999999876555443 7899999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
..+|++|+.+|+|++||++.++.++ +|.+|...+.++.|+|-+. +.++|+.|+.+++||++...|.+.+.+|...
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcce
Confidence 9999999999999999999988777 7889999999999999999 7899999999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001358 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
|..+.| +++|.++++++.|.++++||+..++....+..|...+..+.|+|..-.++.|+. +..+++||+++.+.
T Consensus 157 v~~l~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 157 VDVLRL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEV 230 (825)
T ss_pred eEEEee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEE
Confidence 999999 558899999999999999999999999999999999999999999988888876 67799999999888
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCC
Q 001358 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 600 (1092)
+....... ..|.+..|+|++..+++|....
T Consensus 231 I~s~~~~~---~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 231 ISSGKPET---DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccCCcc---CCceeeeecCCceeeecCchhh
Confidence 87777665 8899999999999888876543
No 151
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=5.8e-19 Score=171.05 Aligned_cols=268 Identities=13% Similarity=0.197 Sum_probs=195.8
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC--CC
Q 001358 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 408 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg 408 (1092)
.+|.+-|.|+.|.+-|++ +|+|+.|++|+|||.....--...+ ...+.|.+.|..+.|.+ -|
T Consensus 10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~T---------------s~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCT---------------SSWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEEe---------------eeEEecCCcEEEEEecCcccc
Confidence 589999999999999996 8999999999999976544322111 11556999999999987 59
Q ss_pred CEEEEEeCCCEEEEEEccC------CCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc------
Q 001358 409 SLLGVAYSKHIVQLYAYHG------GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS------ 476 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~------~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~------ 476 (1092)
+.+|+++.|+++.||.-.. +.......++......|+.+.|.|....+.+++++.||.+|||+.-..-
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 9999999999999998631 1122234456677789999999998887899999999999999865432
Q ss_pred eeEEEe-------cCCcceEEEeecccCC-ccEEEEEecC-----CeEEEEEcCCCCc----eEEecCCCCceEEEEEec
Q 001358 477 RTYSFE-------GHGAPVYSLCPHAKEN-IHFIFSISVD-----GKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSA 539 (1092)
Q Consensus 477 ~~~~~~-------~~~~~v~~i~~~~~~~-~~~l~s~~~d-----g~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~ 539 (1092)
..+++. .+..+..|+.|+++.- .++|+.|+.+ +.+.||....... ..++..+..+|+.++|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 223333 3666777888876543 2467777665 4789998776553 235678888999999999
Q ss_pred CC----CEEEEEecCCCCceeEEEEeCCCCe-----------------EEEEEeeccccCCceEEEEEcCCCCEEEEEeC
Q 001358 540 NG----RRLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1092)
Q Consensus 540 dg----~~l~~~~~~~~~~~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 598 (1092)
+- ..|++++. +| |+||.+.... .+..+..+..|++.|..+.|+-.|..|.+.+.
T Consensus 234 n~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 234 NIGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred ccCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 63 34666654 44 9999876311 12333333344599999999999999999999
Q ss_pred CCeEEEEECCC---CceEEEEeCC
Q 001358 599 DHVIKIWDMNK---VQLLTTIDAG 619 (1092)
Q Consensus 599 dg~i~iwd~~~---~~~~~~~~~~ 619 (1092)
||.||+|...- .++...+...
T Consensus 309 DG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 309 DGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred CceeeehhhhhhhhheeeeEEecc
Confidence 99999997542 3344445444
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1.6e-19 Score=191.34 Aligned_cols=286 Identities=17% Similarity=0.152 Sum_probs=197.4
Q ss_pred cEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeE
Q 001358 747 QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVI 825 (1092)
Q Consensus 747 ~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i 825 (1092)
..|+.+..+|.|.+++.....+. ++... +.. ...|.+.|..+.+.|....|++++ |.++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr---------------~ee~~-lk~----~~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFR---------------LEERQ-LKK----PLAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred ceEEEecCCCceeeecchhhhcc---------------hhhhh-hcc----cccccceeEeeccCCCceeEEEccCCcee
Confidence 34666777899999986543221 11000 111 114999999999999767777776 7889
Q ss_pred EEEEcCCceeeEE--ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce--------------------e-----
Q 001358 826 SLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------V----- 878 (1092)
Q Consensus 826 ~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--------------------~----- 878 (1092)
++||+++.+++.. +.+|.+.+.+++|.|.+...+++|+.||.|.|||+.-.. .
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9999999998877 889999999999999888999999999999999985321 0
Q ss_pred --eEeeccccCCeEE---EEEcCCCCEEEEEeC-CCcEEEEEcCCCceeeee-eee--cCCCCcCCCCCceEEEEecCCC
Q 001358 879 --ISKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCR-SLQ--TPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 879 --~~~l~~h~~~V~~---l~~spdg~~l~s~s~-Dg~i~iwd~~~~~~~~~~-~~~--~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
+....+|...|.+ +.+.-|...||++|. |+.|+|||+......... ... ....+..-.-.+.++.....|.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 1222345566666 666678899999998 999999999875422111 111 1111111112466777777788
Q ss_pred EEEE-EeCCcEEEEEcCCceeeee-eccCC--CcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCC
Q 001358 950 RFLL-VHETHLAIYEAEELTCLKQ-WFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1092)
Q Consensus 950 ~la~-~~d~~v~lwd~~~~~~~~~-~~~~h--~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1025 (1092)
+|.+ +.|+.|++|++.+...-.. .+.++ ...-..-..|||+.+|++|+.|..+++|.+...+.--... ..
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~G-- 358 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----LG-- 358 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----hC--
Confidence 8877 7999999999976432211 12222 1112223468999999999999999999999876642222 11
Q ss_pred CccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358 1026 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1026 ~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
|.-+|. +++|.|.+-.-++++++|.++++|++.
T Consensus 359 -ht~eVt--~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 359 -HTREVT--TVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred -cceEEE--EEeeccccCCCceeeccCcceEEEecc
Confidence 334455 445554334568888999999999994
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=5.6e-19 Score=171.16 Aligned_cols=256 Identities=13% Similarity=0.177 Sum_probs=190.4
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC-CccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~ 468 (1092)
-.+|.+-|+++.|.+.|+++|+|+.|++|+|||.+.+. ........+.|.+.|..+.|.+- |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 56799999999999999999999999999999965432 34445567899999999999764 66 899999999999
Q ss_pred EEECCC------C---ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE------Eec-------
Q 001358 469 VWDAVT------G---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DYD------- 526 (1092)
Q Consensus 469 vwd~~~------~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~------- 526 (1092)
||.-.. + ....++......|++++|.|..-|-.+++++.||.+|||+....-... .+.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 1 123556677889999999999999999999999999999765432211 111
Q ss_pred CCCCceEEEEEecC---CCEEEEEecC-CCCceeEEEEeCCCC--e--EEEEEeeccccCCceEEEEEcCCC----CEEE
Q 001358 527 APGLGCTRMAYSAN---GRRLFSCGTS-KEGESFLVEWNESEG--A--IKRTYQGLQLQHNSVSVVHFDTAK----DQIL 594 (1092)
Q Consensus 527 ~~~~~i~~~~~s~d---g~~l~~~~~~-~~~~~~i~iwd~~~~--~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~ 594 (1092)
.+..+..|+.|+|. ..+|++++.+ ....+.++||....+ + .+..+.+|. .+|+.++|.|+- ..++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence 23446788899874 3467766643 111234666655432 2 344566666 999999999973 5688
Q ss_pred EEeCCCeEEEEECCCCc-----------------eEEEEe-CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358 595 AAGDDHVIKIWDMNKVQ-----------------LLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 595 ~~s~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
+++.|| |+||++.... .+..+. ..+|...|..+.|+-.|..|++.+.||.+++|...-
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 899999 9999987311 112222 334556799999999999999999999999998653
No 154
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1.5e-19 Score=191.74 Aligned_cols=287 Identities=18% Similarity=0.221 Sum_probs=206.2
Q ss_pred CCCceEEEEEcCcCcEEEEecCCCCce-eeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEE
Q 001358 344 PVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 422 (1092)
Q Consensus 344 pdg~~llasg~~d~~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~i 422 (1092)
|+.+.+||.+..||.|.++|...-.-. ....++ ....|...|..++|-|....|++++.|.++++
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk--------------~~~aH~nAifDl~wapge~~lVsasGDsT~r~ 126 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLK--------------KPLAHKNAIFDLKWAPGESLLVSASGDSTIRP 126 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchhhhhhc--------------ccccccceeEeeccCCCceeEEEccCCceeee
Confidence 344568999999999999998764322 111111 14569999999999997778999999999999
Q ss_pred EEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc--------------------------
Q 001358 423 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-------------------------- 476 (1092)
Q Consensus 423 wd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-------------------------- 476 (1092)
||+++++..... .+.||.+.|.+++|.|+... .+++|+.||.|.|||+.-..
T Consensus 127 Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 127 WDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 999998876643 46799999999999999886 89999999999999975221
Q ss_pred -eeEEEecCCcceEE---EeecccCCccEEEEEec-CCeEEEEEcCCCCceEE--------ecCC---CCceEEEEEecC
Q 001358 477 -RTYSFEGHGAPVYS---LCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVD--------YDAP---GLGCTRMAYSAN 540 (1092)
Q Consensus 477 -~~~~~~~~~~~v~~---i~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~--------~~~~---~~~i~~~~~s~d 540 (1092)
.++....+...|.+ +.+ ..|...|++++. |+.|+|||++....... +..+ ...+.++.....
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~--fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVL--FKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred ccccccccccCceeeeeEEEE--EeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 01111234444433 222 235678888887 99999999987654332 2222 235778888888
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCC--eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001358 541 GRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
|.+|++... |+.|+.|++.+- ..+..+.++......+ .-..+|++.++++|+.|...++|.+.+.+.-..+.
T Consensus 283 Gt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l- 356 (720)
T KOG0321|consen 283 GTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL- 356 (720)
T ss_pred CCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCcceeeeeecCccCChhhh-
Confidence 888877765 667999998754 3344555544111122 23578999999999999999999998765433222
Q ss_pred CCCCCCCceEEEcc-CCCEEEEEeCCCeEEEEECCCC
Q 001358 619 GGGLPENPRICFNK-NGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.++...|.+++|.| .-.-++++++|..++||++..+
T Consensus 357 ~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 357 LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 13345689999987 3344667799999999999654
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=4.3e-19 Score=173.45 Aligned_cols=298 Identities=15% Similarity=0.260 Sum_probs=214.3
Q ss_pred EecccCCCCceEEeecC----CCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 328 QTLIEGSSSPMSMDFHP----VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~sp----dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
+...+|+.+|..++|.+ +...++|+.+. ..+.||......-+.. ++.-.-..|...-..++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~--------------lq~y~D~d~~Esfytcs 96 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRL--------------LQSYADEDHDESFYTCS 96 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceee--------------eeeccCCCCCcceEEEE
Confidence 55678988999999984 33335666554 6788998875442221 11111334778888899
Q ss_pred ECCCC----CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358 404 WSPDG----SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 404 ~spdg----~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
|+-|. -+||+|+.-|.|+|.|+.+++... .+.+|...|+.+.|.|+..+ +++++|.|.+|++|++++..++.
T Consensus 97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~ 172 (385)
T KOG1034|consen 97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVA 172 (385)
T ss_pred EEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEE
Confidence 98753 478999999999999999987766 67899999999999999877 89999999999999999999998
Q ss_pred EE---ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE------Ee----------------------cCC
Q 001358 480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DY----------------------DAP 528 (1092)
Q Consensus 480 ~~---~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~----------------------~~~ 528 (1092)
.| .||.+.|.++.|+. +|.++++++.|.++++|++...+-.. .+ ..|
T Consensus 173 VfGG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH 250 (385)
T KOG1034|consen 173 VFGGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH 250 (385)
T ss_pred EecccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence 87 56999999999955 66799999999999999997432111 11 011
Q ss_pred CCceEEEEEecCCCEEEEEecCCCCceeEEEEeC-CCCeEE----------EEEeeccccCCceEEE--EEcCCCCEEEE
Q 001358 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAIK----------RTYQGLQLQHNSVSVV--HFDTAKDQILA 595 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~-~~~~~~----------~~~~~~~~~~~~v~~~--~~~~~~~~l~~ 595 (1092)
...|.++.|- |.++++-+- ++.|..|.+ +-++.+ ..+.........+.-+ +|.|-++.|+.
T Consensus 251 rnyVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 251 RNYVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cchHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 1122222221 456666543 557999987 222211 1111111112444444 55677899999
Q ss_pred EeCCCeEEEEECCCCce--EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358 596 AGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 596 ~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
|...|.|++||++.... ..++..+.....|...+|+.||..|+..++|++|.-||..
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999987655 3344444445678999999999999999999999999864
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=6.7e-19 Score=172.09 Aligned_cols=299 Identities=14% Similarity=0.198 Sum_probs=206.6
Q ss_pred ccccEEEEEEec----CCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001358 733 KANKISRLTYNN----GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 808 (1092)
Q Consensus 733 ~~~~i~~l~~s~----~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~ 808 (1092)
|...|..++|.+ +...+++......+.+|+.+... +.++...... ..+......+
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~D-~d~~Esfytc 95 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYAD-EDHDESFYTC 95 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeeccC-CCCCcceEEE
Confidence 667788888874 33345555556688888876531 1122222221 2366677778
Q ss_pred EEecCC----CEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec
Q 001358 809 ALSKND----AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883 (1092)
Q Consensus 809 ~~s~dg----~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 883 (1092)
+|+-|- -++|.++ -|.|+|.|..++++...+.+|...|..+.+.|++.++|++++.|.+|++|++++..++..+-
T Consensus 96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 887653 3566665 59999999999999999999999999999999878899999999999999999999998874
Q ss_pred ---cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee-------------eeeeecCCCCcC-------CCCCce
Q 001358 884 ---GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-------------CRSLQTPDGVMT-------LAPSET 940 (1092)
Q Consensus 884 ---~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~~-------~~~~v~ 940 (1092)
||.+.|.++.|+++|.+++|+|.|.+|++|+++..+... ...+.++..+.+ +...|.
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 699999999999999999999999999999998533111 001111111111 001222
Q ss_pred EEEEecCCCEEEE-EeCCcEEEEEc-CCceeeeee------------ccCCCcCEEEEEEe--cCCCEEEEEeCCCcEEE
Q 001358 941 HIQFHKDQTRFLL-VHETHLAIYEA-EELTCLKQW------------FPISSVPISQATFS--CDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus 941 ~l~~s~dg~~la~-~~d~~v~lwd~-~~~~~~~~~------------~~~h~~~v~~l~fs--~dg~~l~t~s~Dg~i~v 1004 (1092)
++.|- |.++++ +.++.|..|.. +-.+.+... +.-....|+-+.|+ |-+++||.|...|.|.+
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 22222 577777 78889999987 212221111 11125566666665 55789999999999999
Q ss_pred EECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358 1005 HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1005 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
||++.-+.... . .+.....+..|+ ..+|+. |+..|+..++|++|.-||..
T Consensus 334 wdL~~~ep~~~-t---tl~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 334 WDLDNNEPPKC-T---TLTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EECCCCCCccC-c---eEEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 99998766411 1 111111234455 455665 58999999999999999863
No 157
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=9.1e-20 Score=185.53 Aligned_cols=243 Identities=15% Similarity=0.181 Sum_probs=188.1
Q ss_pred CCEEEEEeCCCEEEEEEccCCCCccceEEe------------------cccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEI------------------DAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l------------------~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
|+|+|.|+.|..|.|||+.-...+.+...| .+|+..|.+++|+..-+. +|+|||.|.+|++
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEEE
Confidence 689999999999999998643322222222 279999999999988776 8999999999999
Q ss_pred EECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEec
Q 001358 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
||+.+|++..++..|...|.++.|++. ...+|++|+.|+++.+.|.+........-...+.|..++|.|.....+.++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 999999999999999999999999976 4579999999999999999853332222223457888999998877666664
Q ss_pred CCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358 550 SKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
.+|+|+-+|.+.. +++.+++.|. ++|.++++++... .+++++.|+.|.+|++..-.........-......|
T Consensus 350 ---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c 423 (463)
T KOG0270|consen 350 ---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHC 423 (463)
T ss_pred ---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceee
Confidence 3788999999865 8899999988 8999999998754 566799999999999876444222221111222456
Q ss_pred EEEccCC-CEEEEEeCCCeEEEEECCCCCeee
Q 001358 628 ICFNKNG-TLLAVIANENRIKILETPESNSVD 658 (1092)
Q Consensus 628 v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1092)
.++.|+- -+++.|+..+.++|||+.+...+.
T Consensus 424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 424 FALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccCCCcceEEEecCccceEEEeecccChhHH
Confidence 6777754 467788888899999998775443
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=2e-16 Score=184.24 Aligned_cols=372 Identities=23% Similarity=0.395 Sum_probs=285.4
Q ss_pred ecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEecCCc-ceEEEeecccCCcc-EEEEEec-CCeEE
Q 001358 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGA-PVYSLCPHAKENIH-FIFSISV-DGKIK 512 (1092)
Q Consensus 437 l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~-~v~~i~~~~~~~~~-~l~s~~~-dg~i~ 512 (1092)
+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. +++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 557999999999999999 78888899999999998887 6777776443 77777775 55555 5555444 99999
Q ss_pred EEEcCC-CCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001358 513 AWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 513 vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1092)
+|+... ......+..+...+..++|+|+++.+++++. .++.+++|+...+..+..+.+|. ..+.+++|+|++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~ 211 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDGG 211 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCcc
Confidence 999998 7777788889999999999999998777743 36779999999988888888876 8999999999998
Q ss_pred -EEEEEeCCCeEEEEECCCCceEE-EEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCe-eeecccccccce
Q 001358 592 -QILAAGDDHVIKIWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS-VDAAGVLSDNLR 668 (1092)
Q Consensus 592 -~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~v~ 668 (1092)
.+++++.|+.+++||...+.... .+..+... . ...|+|++.++++++.|+.+++|+...... +...
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------- 280 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS--V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-------- 280 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEEeeecCCCCcc--e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------
Confidence 44455999999999988777777 46555332 2 228999998999999999999999886532 1100
Q ss_pred eeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcE
Q 001358 669 KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 748 (1092)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 748 (1092)
..|...+.++.+.|++..
T Consensus 281 --------------------------------------------------------------~~~~~~v~~~~~~~~~~~ 298 (466)
T COG2319 281 --------------------------------------------------------------SGHSSSVLSVAFSPDGKL 298 (466)
T ss_pred --------------------------------------------------------------ecCCccEEEEEECCCCCE
Confidence 114567788888888888
Q ss_pred EEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE--eCCeEE
Q 001358 749 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVIS 826 (1092)
Q Consensus 749 l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~--sdg~i~ 826 (1092)
+++++.++.+.+|+...... ..... ...|...+..+.+.+++..++.+ .++.+.
T Consensus 299 ~~~~~~d~~~~~~~~~~~~~----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 354 (466)
T COG2319 299 LASGSSDGTVRLWDLETGKL----------------------LSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354 (466)
T ss_pred EEEeeCCCcEEEEEcCCCce----------------------EEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence 88888887788886544321 11111 11255678888884333555555 368899
Q ss_pred EEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEE-EeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEe
Q 001358 827 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 905 (1092)
Q Consensus 827 iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 905 (1092)
+|+............. ..+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..+++++
T Consensus 355 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (466)
T COG2319 355 LWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS 431 (466)
T ss_pred eeecCCCceeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEec
Confidence 9999887733333322 2288999998 7 55555 88999999999999887777765547899999999999999999
Q ss_pred CCCcEEEEEcCC
Q 001358 906 GDAQIFVWDVDG 917 (1092)
Q Consensus 906 ~Dg~i~iwd~~~ 917 (1092)
.++.+++|+...
T Consensus 432 ~~~~~~~~~~~~ 443 (466)
T COG2319 432 SDNTIRLWDLKT 443 (466)
T ss_pred CCCcEEEEeccC
Confidence 999999999987
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=6.4e-17 Score=188.33 Aligned_cols=371 Identities=23% Similarity=0.350 Sum_probs=274.8
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCC-ceeeeeeeeeecccccceeEEeeecCCC-CcEEEEEE-C
Q 001358 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-S 405 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~-s 405 (1092)
.+.+|...|.++.|.+++. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 5678899999999999998 67888889999999999886 3322 33322 46777777 8
Q ss_pred CCCC-EEEEEeC-CCEEEEEEccC-CCCccceEEecccccceeEEEeeCCCCcEEEEEEeC-CCcEEEEECCCCceeEEE
Q 001358 406 PDGS-LLGVAYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSF 481 (1092)
Q Consensus 406 pdg~-~las~~~-d~~i~iwd~~~-~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~ 481 (1092)
+++. +++..+. |+.+.+|+... .. ....+..|...|..++|+|++. .+++++. |+.+++|++.++..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGK---LIRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCe---EEEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 89999999987 43 2336778999999999999999 6777775 999999999999999999
Q ss_pred ecCCcceEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358 482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.+|...|.++++. +++. ++++++.|+.|++||........ .+..+.... ...|++++..+++++. ++.+++
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL 267 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence 9999999999997 4555 55566999999999888666655 466666664 3389999988886654 667999
Q ss_pred EeCCCCeE-EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001358 560 WNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 560 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
|+...... ...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.|.+++..++
T Consensus 268 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344 (466)
T ss_pred eeecCCCcEEEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEE
Confidence 99987665 44444444 889999999988899888888999999998887776665112222578888843435666
Q ss_pred EE-eCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccccee-eccccccceecee
Q 001358 639 VI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS-VEAENKSEVEKPL 716 (1092)
Q Consensus 639 ~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s-~~~d~~i~~w~~~ 716 (1092)
.+ ..|+.+.+|+............... +..+.+. ++ ..... +..++.+.+|+..
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------~~-~~~~~~~~~~~~~~~~~~~ 400 (466)
T COG2319 345 SGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS----------------------PD-GRVVSSGSTDGTVRLWDLS 400 (466)
T ss_pred EeecCCCcEEeeecCCCceeEEecCCce-EEEEEEC----------------------CC-CCEEEEecCCCceEEEecc
Confidence 65 6788999999988762222222211 4444454 22 22333 5778899999976
Q ss_pred eccCccceecccCCcccc-ccEEEEEEecCCcEEEEeecCCeeEEeeecC
Q 001358 717 FARPSECQSLLLPSKVKA-NKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1092)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~ 765 (1092)
......... .. ..+....+++++..++.++.++.+++|+...
T Consensus 401 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 401 TGSLLRNLD-------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cCeeeeecc-------CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 432221111 11 6788899999999999988899999988543
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.4e-20 Score=211.82 Aligned_cols=296 Identities=16% Similarity=0.265 Sum_probs=226.6
Q ss_pred ceEEeecCCCceEEEEEcC----------cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358 337 PMSMDFHPVQHTLLLVGTN----------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~----------d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
-..++|||++..++|+|.. +.++.||.+.-..... |+..+. --.-...-+.++|++
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~-------dlk~~~-------s~~s~~rF~kL~W~~ 74 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS-------DLKPVG-------SLQSSNRFNKLAWGS 74 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc-------cccccc-------cccccccceeeeecc
Confidence 3467999999767887743 2344555443221110 000000 011235677899999
Q ss_pred CCCE----EEEEeCCCEEEEEEccC---CCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358 407 DGSL----LGVAYSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 407 dg~~----las~~~d~~i~iwd~~~---~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
.|.. ||.|..||.|.+||... +.....+.+...|.+.|..+.|++.+.. +|++|+.||.|.|||+..-+.-.
T Consensus 75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence 7766 88889999999999876 4444445567789999999999998876 79999999999999998765554
Q ss_pred EEe--cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--ceEEEEEecCCCE-EEEEecCCCCc
Q 001358 480 SFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRR-LFSCGTSKEGE 554 (1092)
Q Consensus 480 ~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~dg~~-l~~~~~~~~~~ 554 (1092)
... .....|.+++|+.. ..++|++++.+|++.|||++..+.+..+..+.. .+..++|+|++.. +++++ +.+..
T Consensus 154 ~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As-~dd~~ 231 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVAS-GDDSA 231 (1049)
T ss_pred CCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeec-CCCCC
Confidence 442 24567999999743 557899999999999999999988887766655 4778999998864 44444 45668
Q ss_pred eeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358 555 SFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 555 ~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
-.|.+||++. ...++.+++|. ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+ ..+..+.|+|
T Consensus 232 PviqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--nW~fdv~w~p 306 (1049)
T KOG0307|consen 232 PVIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG--NWCFDVQWCP 306 (1049)
T ss_pred ceeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--cceeeeeecC
Confidence 8999999874 45677788888 899999999987 788899999999999999999999998643 4688999999
Q ss_pred CCC-EEEEEeCCCeEEEEECCCC
Q 001358 633 NGT-LLAVIANENRIKILETPES 654 (1092)
Q Consensus 633 ~~~-~l~~~~~dg~i~iw~~~~~ 654 (1092)
... .+++++-||.|.|+.+...
T Consensus 307 r~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCcchhhhheeccceeeeeeecC
Confidence 554 8899999999999998765
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=8.4e-19 Score=179.98 Aligned_cols=294 Identities=16% Similarity=0.206 Sum_probs=214.7
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE--eCCCeEEEEECCCCCeeeecccccccceee
Q 001358 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKL 670 (1092)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 670 (1092)
+..++....+++||.........+..+...+.+.++.|+.... |+++ +.|..+++|.-.....
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~-------------- 69 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTP-------------- 69 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCC--------------
Confidence 3344444579999998877776666666666789999987654 4443 4577788886442200
Q ss_pred eecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEE
Q 001358 671 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF 750 (1092)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 750 (1092)
+|-+-... ....-.|++......+++
T Consensus 70 --------------------------------------~Vp~~~k~----------------~gd~~~Cv~~~s~S~y~~ 95 (673)
T KOG4378|consen 70 --------------------------------------EVPRVRKL----------------TGDNAFCVACASQSLYEI 95 (673)
T ss_pred --------------------------------------ccceeecc----------------ccchHHHHhhhhcceeee
Confidence 00000000 011122333344457899
Q ss_pred EeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEE
Q 001358 751 ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYI 829 (1092)
Q Consensus 751 ~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd 829 (1092)
+++..+.++|||++... .-..+. +|...|+++.+.....|||++++ |.|.|..
T Consensus 96 sgG~~~~Vkiwdl~~kl------------------------~hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~ 149 (673)
T KOG4378|consen 96 SGGQSGCVKIWDLRAKL------------------------IHRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHG 149 (673)
T ss_pred ccCcCceeeehhhHHHH------------------------Hhhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEe
Confidence 99999999999986421 111122 48899999999999999999995 8899999
Q ss_pred cCCceeeEEecCCCC-CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee-ccccCCeEEEEEcCCC-CEEEEEeC
Q 001358 830 VMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDAL-NILVSSGG 906 (1092)
Q Consensus 830 ~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~spdg-~~l~s~s~ 906 (1092)
+.++.....|....+ .++-+.|+|....+|.+++.+|.|.+||+....+...+ +.|..+...++|+|.. .+|++.|.
T Consensus 150 ~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~ 229 (673)
T KOG4378|consen 150 TKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY 229 (673)
T ss_pred cccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc
Confidence 999888888876544 56689999966677888999999999999987766554 5699999999999954 77899999
Q ss_pred CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCcCEEEEE
Q 001358 907 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQAT 985 (1092)
Q Consensus 907 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~ 985 (1092)
|..|.+||+....... ++.. ..+..+++|+++|.+|++| ..|.|..||++..+..-..+..|...|++++
T Consensus 230 Dkki~~yD~~s~~s~~--~l~y-------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va 300 (673)
T KOG4378|consen 230 DKKINIYDIRSQASTD--RLTY-------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA 300 (673)
T ss_pred cceEEEeecccccccc--eeee-------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence 9999999998643222 1111 1257899999999999996 7799999999876655555778999999999
Q ss_pred EecCC
Q 001358 986 FSCDC 990 (1092)
Q Consensus 986 fs~dg 990 (1092)
|-+..
T Consensus 301 fq~s~ 305 (673)
T KOG4378|consen 301 FQPSP 305 (673)
T ss_pred eeecc
Confidence 98765
No 162
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.2e-17 Score=177.45 Aligned_cols=606 Identities=12% Similarity=0.117 Sum_probs=360.1
Q ss_pred CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC-----
Q 001358 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG----- 408 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg----- 408 (1092)
...-.++.|+|.| |+|.|+. ..|.|-|..+-+.+.. +.-|...|+.+.|+|-.
T Consensus 15 ~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~l 72 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDL 72 (1062)
T ss_pred cccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhc
Confidence 3357789999999 6888875 6799999999888875 55699999999998731
Q ss_pred -------CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeC---CCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358 409 -------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 409 -------~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
-+||++...|.|.+||...+..+. .+..|..++..++|-+ +++. +|+.-....++.+|+..+|+..
T Consensus 73 lS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~ 148 (1062)
T KOG1912|consen 73 LSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKF 148 (1062)
T ss_pred cCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCcee
Confidence 257788888999999999886555 5677888999999965 3434 5566666789999999999999
Q ss_pred EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC------ceEEe-cCCCC-------------------c-
Q 001358 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDY-DAPGL-------------------G- 531 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~-~~~~~-------------------~- 531 (1092)
...........++.+.|-.. ..+..-+..|.+.+.+.-... ....+ ..+.. .
T Consensus 149 Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa 227 (1062)
T KOG1912|consen 149 WKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA 227 (1062)
T ss_pred eccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence 88776666677777766543 344444455555555432111 11111 11100 0
Q ss_pred -----eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC--CEEEEEeCCCeEEE
Q 001358 532 -----CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKI 604 (1092)
Q Consensus 532 -----i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~i 604 (1092)
...++|+|.-+.++.... ...+.++|++-..++....-.. +.+.-+.+-|++ ..+++.-.||.+.+
T Consensus 228 ~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~lti 300 (1062)
T KOG1912|consen 228 YFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTI 300 (1062)
T ss_pred hHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEE
Confidence 123567776555444443 2339999999888888777655 666667776664 67899999999999
Q ss_pred EECCCC----------------ceEEEEeCCCCCCCCceEEEccC-CCEEEEEeCCCeEEEEECCCCCeeeecc------
Q 001358 605 WDMNKV----------------QLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAAG------ 661 (1092)
Q Consensus 605 wd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~------ 661 (1092)
|-.+.. .....+..-... .....+..|. ...+++...+|...+|.+.+++.-....
T Consensus 301 rvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel 379 (1062)
T KOG1912|consen 301 RVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIEL 379 (1062)
T ss_pred EEeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccc
Confidence 976542 222222111111 1222333343 4556666677888889888653221111
Q ss_pred -------------------------cccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceecee
Q 001358 662 -------------------------VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 662 -------------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1092)
+|.....+....|.....-+.+.. +......--.+++.|...|+|.++|+.
T Consensus 380 ~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p----~~n~~~~~~pLvAvGT~sGTV~vvdvs 455 (1062)
T KOG1912|consen 380 VLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDP----GGNTPAGTVPLVAVGTNSGTVDVVDVS 455 (1062)
T ss_pred cccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCC----CCCccceeeeeEEeecCCceEEEEEec
Confidence 111222222222211111000000 000001112457889999999999987
Q ss_pred eccCccceecccCCccccccEEEEEEecCCcEEEEeecC--CeeEEeeecCCccccCcccccccCCccccCCCCCceeee
Q 001358 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVN 794 (1092)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1092)
++....... .|...|.++.|......+-.+.+. ..-.+ -.+.+.+-++.+|......
T Consensus 456 t~~v~~~fs------vht~~VkgleW~g~sslvSfsys~~n~~sg~---------------vrN~l~vtdLrtGlsk~fR 514 (1062)
T KOG1912|consen 456 TNAVAASFS------VHTSLVKGLEWLGNSSLVSFSYSHVNSASGG---------------VRNDLVVTDLRTGLSKRFR 514 (1062)
T ss_pred chhhhhhhc------ccccceeeeeeccceeEEEeeeccccccccc---------------eeeeEEEEEcccccccccc
Confidence 655444443 388999999998887754433321 00000 0123445566666644444
Q ss_pred cCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEc-CC---------------CCC
Q 001358 795 DTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------DNN 857 (1092)
Q Consensus 795 ~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------d~~ 857 (1092)
.+++ ..+.+|+.+..|..|+|++..- +.-+.+||+++..+++...-.-.-++.++|+ |. ..+
T Consensus 515 ~l~~-~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n 593 (1062)
T KOG1912|consen 515 GLQK-PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSEN 593 (1062)
T ss_pred cCCC-CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhc
Confidence 3333 5788999999999999999997 6779999998877766554444458888888 31 112
Q ss_pred EEEEEeCCCeEEEEEcCC-------cee-eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC
Q 001358 858 VIAIGMDDSTILIYNARS-------SEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP 929 (1092)
Q Consensus 858 ~lasg~~dg~v~iwd~~~-------~~~-~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~ 929 (1092)
.++..+ +..+++.+.- +.. ....+.....+..|+|- +..|+.|..+|.+.+||+....... ....+
T Consensus 594 ~vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg--~~d~p 667 (1062)
T KOG1912|consen 594 LVVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRG--VRDSP 667 (1062)
T ss_pred eeeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccC--ccCCC
Confidence 333333 2333333321 111 11111112233446664 6699999999999999987632111 11111
Q ss_pred CCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCC--CcCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001358 930 DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 930 ~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
.+. .......+-|....+++-...-+-+||.+....+..+ .+. +..+..+.+......++ ..|.++|+-.+
T Consensus 668 -~~r---a~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m 740 (1062)
T KOG1912|consen 668 -DPR---AHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVM 740 (1062)
T ss_pred -Cch---hhheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceec--CCCCceeEEec
Confidence 111 1223334445433444445556889999888777764 333 34444555544444443 34557887766
Q ss_pred CCCceE
Q 001358 1008 SNLEVQ 1013 (1092)
Q Consensus 1008 ~~~~~~ 1013 (1092)
......
T Consensus 741 ~mks~~ 746 (1062)
T KOG1912|consen 741 PMKSPP 746 (1062)
T ss_pred cccCCc
Confidence 655443
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=9.8e-19 Score=179.51 Aligned_cols=293 Identities=14% Similarity=0.173 Sum_probs=220.6
Q ss_pred EEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE--EeCCCEEEEEEccC
Q 001358 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV--AYSKHIVQLYAYHG 427 (1092)
Q Consensus 350 lasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las--~~~d~~i~iwd~~~ 427 (1092)
+|+++ ..++|||+..-+....+. -......+.++.|+.... |++ .+.|..|++|.-..
T Consensus 7 ~aS~g--d~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g 66 (673)
T KOG4378|consen 7 VASTG--DKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDG 66 (673)
T ss_pred eeccC--CceEEeecccccCccccc-----------------cCCCCCcceeeeccccce-EEEeecCCceeEEEecccC
Confidence 44443 579999998655443211 001123488999998664 444 35678899997654
Q ss_pred CCC-ccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe
Q 001358 428 GSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506 (1092)
Q Consensus 428 ~~~-~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~ 506 (1092)
... +.....+.+. .-.|++...... ++++||..+.|+|||++...+.+.+++|...|+++.++. ...+|++++
T Consensus 67 ~~~~Vp~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs 140 (673)
T KOG4378|consen 67 KTPEVPRVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVS 140 (673)
T ss_pred CCCccceeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEec
Confidence 311 1111122222 233343333334 899999999999999998888889999999999999865 447999999
Q ss_pred cCCeEEEEEcCCCCceEEecCC-CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001358 507 VDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1092)
Q Consensus 507 ~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 585 (1092)
..|.|.+..+.++.....+... +..+.-+.|+|..+.+++...+ ++.|.+||......+..+.. .|..+...++
T Consensus 141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gic 215 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGIC 215 (673)
T ss_pred cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCcce
Confidence 9999999999988877777766 4456789999999887766542 77899999988877655443 2358899999
Q ss_pred EcCCCCE-EEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC-Ceeeecccc
Q 001358 586 FDTAKDQ-ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVL 663 (1092)
Q Consensus 586 ~~~~~~~-l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~ 663 (1092)
|+|.+.. +++.+.|..|.+||....+....+.... +...++|+++|.+|++|...|.|..||++.. .++.....|
T Consensus 216 fspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah 292 (673)
T KOG4378|consen 216 FSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH 292 (673)
T ss_pred ecCCccceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec
Confidence 9998654 5668999999999999887777776543 4689999999999999999999999999854 678888999
Q ss_pred cccceeeeecCCc
Q 001358 664 SDNLRKLSVNPIS 676 (1092)
Q Consensus 664 ~~~v~~~~~~~~~ 676 (1092)
...|++++|.+..
T Consensus 293 ~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 293 DASVTRVAFQPSP 305 (673)
T ss_pred ccceeEEEeeecc
Confidence 9999999998765
No 164
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=9.5e-19 Score=178.63 Aligned_cols=308 Identities=13% Similarity=0.104 Sum_probs=221.6
Q ss_pred CCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccc
Q 001358 654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 733 (1092)
Q Consensus 654 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 733 (1092)
-......+.+.+.|.+++|.|. ...+++++|+.-|+|-+|++...++.....+.+ ..|
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt--------------------~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f--~~h 233 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPT--------------------ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF--TPH 233 (498)
T ss_pred ceecceeEecccceEEEEeccc--------------------CcceEEEEccCCCcEEEEecCCCCCccCceEEe--ccC
Confidence 3344555667788999999874 345788999999999999996444443333333 348
Q ss_pred cccEEEEEEecC-CcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358 734 ANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 734 ~~~i~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
...|.++.|+|. -..+++.+.||+|++-|+...... .++... .....+..+.|+.
T Consensus 234 s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-----------~v~s~~-------------~d~~~fs~~d~~~ 289 (498)
T KOG4328|consen 234 SGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-----------EVLSLD-------------TDNIWFSSLDFSA 289 (498)
T ss_pred CccccceEecCCChhheeeeccCceeeeeeecchhhH-----------HHhhcC-------------ccceeeeeccccC
Confidence 999999999995 456888999999999887654210 001100 1445667788888
Q ss_pred CCCEEEEEeC-CeEEEEEcCCcee-eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee----eEeecccc
Q 001358 813 NDAYLFSASG-GVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----ISKLEGHS 886 (1092)
Q Consensus 813 dg~~l~~~sd-g~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~----~~~l~~h~ 886 (1092)
+...++.+.+ |.+.+||..+... ...+.-|...|+.++++|....+|||++.|++++|||++.-.. .-....|.
T Consensus 290 e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr 369 (498)
T KOG4328|consen 290 ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR 369 (498)
T ss_pred CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccc
Confidence 8888888875 8999999987654 5666778889999999998888999999999999999986322 23334599
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcC---CCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEE
Q 001358 887 KRVTGLVFSDALNILVSSGGDAQIFVWDVD---GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIY 962 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lw 962 (1092)
..|.+..|||++..|+|.+.|..|+|||.. ...... ..+.....+.. --.....+|.||..+++++ .-..|-|+
T Consensus 370 rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~-~~I~Hn~~t~R-wlT~fKA~W~P~~~li~vg~~~r~IDv~ 447 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL-GTIPHNNRTGR-WLTPFKAAWDPDYNLIVVGRYPRPIDVF 447 (498)
T ss_pred ceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcc-ceeeccCcccc-cccchhheeCCCccEEEEeccCcceeEE
Confidence 999999999999889999999999999985 211111 11211111100 0135567899999999996 56779999
Q ss_pred EcCCceeeeeeccCCCcCEEE-EEEecCCCEEEE-EeCCCcEEEEECCC
Q 001358 963 EAEELTCLKQWFPISSVPISQ-ATFSCDCRMVFT-SFVDGTLSIHEASN 1009 (1092)
Q Consensus 963 d~~~~~~~~~~~~~h~~~v~~-l~fs~dg~~l~t-~s~Dg~i~vwd~~~ 1009 (1092)
|...++.+..+.......|.+ ..|.|-+..+++ ++..|.|+||--+.
T Consensus 448 ~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 448 DGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 999999887765555555655 468887774554 44567788886543
No 165
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.82 E-value=2e-18 Score=168.38 Aligned_cols=409 Identities=11% Similarity=0.119 Sum_probs=261.1
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
-+.|||+|+|+|+++.- .+.|=|.++-+..+.. .--..|..+.|..|... .+.....|+.|.+|++...+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 36899999999999776 6888888875543321 12346888999999885 566778899999999999988888
Q ss_pred EecCCcceEEEeecccCCc-cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358 481 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
+.....++.+++|+| || .+|.+...|-+|.+|.+.+..... +......+..++|+|||++.+.++.. +-...+.+
T Consensus 87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence 988889999999965 55 677788889999999998766543 33344566889999999999988742 22233333
Q ss_pred EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001358 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1092)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1092)
..-....+++.+.... ...+.+.|+|||+.+++ ||.--.-.+..... + -.+..++|+|.++++++
T Consensus 163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laV---------wd~~Leykv~aYe~--~-lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYER--G-LGLKFVEWSPCNQFLAV 227 (447)
T ss_pred HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEE---------ecchhhheeeeeee--c-cceeEEEeccccceEEe
Confidence 3333444555555544 56788999999987765 44221111111111 1 24788999999999999
Q ss_pred EeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeecc
Q 001358 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1092)
Q Consensus 640 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~ 719 (1092)
|+.|+.+|+.+--+-+.+..+-. -.. -.|.+..+-..+...
T Consensus 228 GsyD~~lrvlnh~tWk~f~eflh-l~s--------------------------------------~~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFTWKPFGEFLH-LCS--------------------------------------YHDPTLHLLEKETFS 268 (447)
T ss_pred eccchhhhhhceeeeeehhhhcc-chh--------------------------------------ccCchhhhhhhhhcc
Confidence 99999999977554433322210 000 001110000000000
Q ss_pred CccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCC
Q 001358 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 799 (1092)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 799 (1092)
+ -.-...++.|.|..- ...+|......+. .......+....+.+ + .+
T Consensus 269 ~------------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE---~~~~pv~~~~lkp~t-------D--~p 315 (447)
T KOG4497|consen 269 I------------VQLLHHCLSFTPTDL---------EAHIWEESETIYE---QQMTPVKVHKLKPPT-------D--FP 315 (447)
T ss_pred h------------hhhcccccccCCCcc---------ccCccccchhhhh---hhhcceeeecccCCC-------C--CC
Confidence 0 001122344444321 0111111100000 000000000001111 1 11
Q ss_pred CCCCCeeEEEEecCCCEEEEEeC---CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001358 800 NSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 800 ~~~~~v~~~~~s~dg~~l~~~sd---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
+..-.+.-++|++|..++++-.| +.+.+||+...+....+. ...+|.+..|.| ....|+.+.....+++|.....
T Consensus 316 nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 316 NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCc
Confidence 23456778999999999999976 569999998776654443 456899999999 7778888887788999988765
Q ss_pred eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCc
Q 001358 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 909 (1092)
Q Consensus 877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~ 909 (1092)
.++..- +..-.|..+.|.-+|..++-.+.|.-
T Consensus 394 ~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 394 RVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 555433 34467999999999999999998863
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=6.6e-18 Score=164.63 Aligned_cols=289 Identities=14% Similarity=0.196 Sum_probs=207.5
Q ss_pred eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC-------CCCCE
Q 001358 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-------PDGSL 410 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s-------pdg~~ 410 (1092)
..+.|||||. -+.+-+.|..+.+|++...-.-.....++ . ...+..+--.....|...+|- |+..+
T Consensus 53 kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~~----~--~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 53 KGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGPL----N--FSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred ccceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCcc----c--cccceeEEeccCCEEEEEEeeeccccCCCccce
Confidence 3578999998 56777899999999985421111000000 0 000001111134567777764 67889
Q ss_pred EEEEeCCCEEEEEEccCCCCccceEEeccccc---ceeEEEeeCCCCcEEEEEEeCCCcEEEEEC-CCCcee--EEE---
Q 001358 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSF--- 481 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~---~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~-~~~~~~--~~~--- 481 (1092)
+|+.+.+.-|++||.-+|+...... .-.|.. ...+++|+|||. .|+ ++....|+++|+ +.|+.- +..
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlf-aGykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLF-AGYKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred eeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEe-ecccceEEEeeccCCCCCCcchhhhhc
Confidence 9999999999999999998654322 123444 346899999999 455 455789999998 455432 211
Q ss_pred --ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358 482 --EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 482 --~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.+..+.+.+++|+|. +...++.|+...++-++.....++...+.+|++.|+.+.|.+||+.|++++.. +..|..
T Consensus 202 ~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl~ 277 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKILC 277 (406)
T ss_pred ccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeEEE
Confidence 233667888899876 45689999999999999999999999999999999999999999999999853 556999
Q ss_pred EeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCCCceEEEccCCCEE
Q 001358 560 WNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1092)
Q Consensus 560 wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1092)
||++. +..+..+..|....+.-.-....|++++|++|+.||.|++||+.+ |..+..+..+.. -++.++++|--.++
T Consensus 278 WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpil 355 (406)
T KOG2919|consen 278 WDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPIL 355 (406)
T ss_pred EeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCccccee
Confidence 99974 556666776662122223345678899999999999999999998 676666655433 48899999998888
Q ss_pred EEEeCC
Q 001358 638 AVIANE 643 (1092)
Q Consensus 638 ~~~~~d 643 (1092)
|+++..
T Consensus 356 atssGq 361 (406)
T KOG2919|consen 356 ATSSGQ 361 (406)
T ss_pred eeccCc
Confidence 887764
No 167
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=3.4e-18 Score=170.18 Aligned_cols=263 Identities=16% Similarity=0.202 Sum_probs=185.2
Q ss_pred cccCCCCceEEeecCCCc-eEEEEEcCcCcEEEEecCCCC-ceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 330 LIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~-~llasg~~d~~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
..+|.+.+..+.-++-|+ .++|+=+..|.|.|||+..-- .+..-.+.+-+ .-.++ ...+.+|...=..++|||-
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~--s~~~P--l~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD--SEFRP--LFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc--cccCc--eEEecccCccceeeecccc
Confidence 346777888888777653 356677778999999985421 11110111111 00111 1237789999999999992
Q ss_pred -CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC---ceeEEEec
Q 001358 408 -GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEG 483 (1092)
Q Consensus 408 -g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~~~ 483 (1092)
-..|++|.-.+.|++|...+|.-.--...+.+|+..|-.++|||..+. +|+|||-||+|+|||++.+ .++.+ +.
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~-kA 300 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVST-KA 300 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEe-ec
Confidence 234777877778999999987644333357789999999999998877 8999999999999999988 33433 88
Q ss_pred CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEE
Q 001358 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
|.+.|+.+.|+.. ..+|++|+.||+++|||++.. +++..++.|..+|+++.|+|...-.+.++. .+.+|.+|
T Consensus 301 h~sDVNVISWnr~--~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~QitiW 375 (440)
T KOG0302|consen 301 HNSDVNVISWNRR--EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQITIW 375 (440)
T ss_pred cCCceeeEEccCC--cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCCcEEEE
Confidence 9999999999654 349999999999999999864 456789999999999999996654444332 27789999
Q ss_pred eCCCCeE----------------EEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCeEEEE
Q 001358 561 NESEGAI----------------KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIW 605 (1092)
Q Consensus 561 d~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iw 605 (1092)
|+..-.- .+.+-.|. ....+..+.|++.- .++++.+.|| +.||
T Consensus 376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 9863211 01122222 23467788898874 4566666776 4444
No 168
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=4.2e-18 Score=169.53 Aligned_cols=250 Identities=15% Similarity=0.172 Sum_probs=185.1
Q ss_pred CCCCCeeEEEEecCCCEEEEE--eC-CeEEEEEcCC----------------ceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001358 800 NSQEAVPCFALSKNDAYLFSA--SG-GVISLYIVMT----------------FKTILTIMPPSPTATSLAFNPHDNNVIA 860 (1092)
Q Consensus 800 ~~~~~v~~~~~s~dg~~l~~~--sd-g~i~iwd~~~----------------~~~~~~~~~~~~~i~~l~~s~~d~~~la 860 (1092)
+|.+.+..+..++-++-.+++ ++ |.|.||++.. .+.+.++.+|...-.+++|||...-.|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 477777777777765444444 44 9999999742 3456778899999999999995555688
Q ss_pred EEeCCCeEEEEEcCCcee---eEeeccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001358 861 IGMDDSTILIYNARSSEV---ISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1092)
Q Consensus 861 sg~~dg~v~iwd~~~~~~---~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1092)
+|.--+.|++|...+|.- ...+.+|+..|..|+|||. ...|||||.||+|+|||+..+....+... ..|.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~---kAh~--- 302 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST---KAHN--- 302 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---eccC---
Confidence 888889999999988752 3556789999999999995 57899999999999999998765443333 2232
Q ss_pred CCceEEEEecCCCEEEEE-eCCcEEEEEcCC---ceeeeeeccCCCcCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCc
Q 001358 937 PSETHIQFHKDQTRFLLV-HETHLAIYEAEE---LTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 937 ~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~---~~~~~~~~~~h~~~v~~l~fs~d-g~~l~t~s~Dg~i~vwd~~~~~ 1011 (1092)
+.|..+.|+.+-.+||+| .||+++|||+++ ++.+.. +.-|..+|+++.|+|. ...|+++|.|..|.+||+....
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~-fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT-FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee-EEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 269999999999999984 779999999974 445555 5679999999999984 5678888999999999987543
Q ss_pred e---EEe--eccccccCCCC---ccCcccceEEEECCCCCCEEEEEeCCCcEE
Q 001358 1012 V---QCR--ILSTAYLRPTT---SCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1056 (1092)
Q Consensus 1012 ~---~~~--~~~~~~~~~~~---~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~ 1056 (1092)
- ... ......+|++. |.+.-..-.+.||++-+.++++.+.||.-.
T Consensus 382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnV 434 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNV 434 (440)
T ss_pred ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeE
Confidence 2 000 00111233331 222222225779998899999999999633
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=4.9e-18 Score=169.97 Aligned_cols=237 Identities=16% Similarity=0.261 Sum_probs=187.9
Q ss_pred eecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCC----ccceEEecccccceeEEEeeCCCCcEEEEEEeCCC
Q 001358 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~ 465 (1092)
+..||+++|..++|+| +...||+||.|.+|.||.+-.+.. ......|.+|...|-.++|+|.... .|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4789999999999999 778999999999999999875533 2345578999999999999999877 789999999
Q ss_pred cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-ceEEEEEecCCCEE
Q 001358 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRL 544 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l 544 (1092)
+|.+||+.+|+.+.++. |...|.+++|+ .||.++++.+.|+.|||||.++++.+..-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999987 99999999995 5788999999999999999999988887766654 456677888998 6
Q ss_pred EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCce-EEEEeCCCCC
Q 001358 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGL 622 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~-~~~~~~~~~~ 622 (1092)
++.+.++-.+.++-+||...-+.-..+.... ..+.|.--.|.++.+.++. |-.|+.||.|.+....+ +.-+..-...
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 7777777779999999987654333332222 1356777788999888866 45899999999987653 3333322233
Q ss_pred CCCceEEEccC
Q 001358 623 PENPRICFNKN 633 (1092)
Q Consensus 623 ~~v~~v~~s~~ 633 (1092)
.+-..+.|-|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 34566777764
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=2.8e-17 Score=165.67 Aligned_cols=300 Identities=14% Similarity=0.187 Sum_probs=214.2
Q ss_pred cccEEEEEEecCCc-EEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358 734 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 734 ~~~i~~l~~s~~g~-~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
..++..+.|.+++. .+++++.|..|++|.+........+ ........+. .|...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls--~H~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLS--RHTRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeeccc--CCcceeEEEEEcC
Confidence 45688889988877 8999999999999998765321110 0112222333 4999999999999
Q ss_pred CCCEEEEEeC-CeEEEEEcC--------C--------ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001358 813 NDAYLFSASG-GVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 813 dg~~l~~~sd-g~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 875 (1092)
+|.+||+|+| |.+.+|-.. + +...+.+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 9999999985 889999765 2 345567888999999999999 999999999999999999999
Q ss_pred ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee---eecCCCCcC------------CCCCce
Q 001358 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQTPDGVMT------------LAPSET 940 (1092)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~~~~~~~~------------~~~~v~ 940 (1092)
|+....+.+|...|..++|.|-++++++-+.|...+++.+.........- +....+... ...-..
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 99999999999999999999999999999999877777665432211100 000000000 002356
Q ss_pred EEEEecCCCEEEEE-----eCC-----cEEEEEcCCceeeeeeccCCCcCEEEEEEec--------CC---------CEE
Q 001358 941 HIQFHKDQTRFLLV-----HET-----HLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC---------RMV 993 (1092)
Q Consensus 941 ~l~~s~dg~~la~~-----~d~-----~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg---------~~l 993 (1092)
.++|+|||.+|++. ..+ ..++|+-...+.....+++-..++..+.|+| +. +++
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 78999999999982 222 3456655433333333445566677777776 11 233
Q ss_pred EEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358 994 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 994 ~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
+.......|+|||.++...++.....-| ..+. +++|++ |+..++..+.||-..+--+.
T Consensus 315 faiAt~~svyvydtq~~~P~~~v~nihy-------~~iT--Diaws~-dg~~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 315 FAIATKNSVYVYDTQTLEPLAVVDNIHY-------SAIT--DIAWSD-DGSVLLVSSTDGFCSLVTFE 372 (434)
T ss_pred EEEeecceEEEeccccccceEEEeeeee-------eeec--ceeecC-CCcEEEEeccCCceEEEEEc
Confidence 3333456899999999888877663322 2333 788998 68999999999977665543
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=1.3e-17 Score=162.55 Aligned_cols=230 Identities=15% Similarity=0.185 Sum_probs=167.4
Q ss_pred cCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCC
Q 001358 744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG 823 (1092)
Q Consensus 744 ~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg 823 (1092)
|+..++++.+.+.-|++||.-.++.. ...+.+|... .-....+++|+|||..|..|...
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lr--------aSy~~ydh~d-------------e~taAhsL~Fs~DGeqlfaGykr 179 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLR--------ASYRAYDHQD-------------EYTAAHSLQFSPDGEQLFAGYKR 179 (406)
T ss_pred CccceeeeccccCceeeeeccccccc--------cchhhhhhHH-------------hhhhheeEEecCCCCeEeecccc
Confidence 55666777777777777765443220 0111111110 11234589999999999999999
Q ss_pred eEEEEEc-CCceeeE---Ee----cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEc
Q 001358 824 VISLYIV-MTFKTIL---TI----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 895 (1092)
Q Consensus 824 ~i~iwd~-~~~~~~~---~~----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 895 (1092)
.|+++|+ ..|+.-. ++ .+..+-|.+++|+|.+...+|+|+....+-||.-..+.++..+-+|.+.|+.+.|.
T Consensus 180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ 259 (406)
T KOG2919|consen 180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWC 259 (406)
T ss_pred eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEec
Confidence 9999999 4443211 11 12356789999999888899999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCC-ceeeee
Q 001358 896 DALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE-LTCLKQ 972 (1092)
Q Consensus 896 pdg~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~-~~~~~~ 972 (1092)
+||+.|.+|++ |-.|..||+.... ..+-.+..|......-.-....|+|++|++| .||.|++||+.+ |..+..
T Consensus 260 edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv 335 (406)
T KOG2919|consen 260 EDGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV 335 (406)
T ss_pred cCcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc
Confidence 99999999985 6779999998633 2333333333211122334558999999996 899999999998 554554
Q ss_pred eccCCCcCEEEEEEecCCCEEEEEeCC
Q 001358 973 WFPISSVPISQATFSCDCRMVFTSFVD 999 (1092)
Q Consensus 973 ~~~~h~~~v~~l~fs~dg~~l~t~s~D 999 (1092)
...|+..+..+.+.|-=.+++|++..
T Consensus 336 -~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 336 -TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred -cccccccccceecCcccceeeeccCc
Confidence 55689999999999987778877654
No 172
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=2.7e-16 Score=163.37 Aligned_cols=496 Identities=14% Similarity=0.127 Sum_probs=297.1
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEeccccccee-EEEee-------CCCCcEEEEEEeCCC
Q 001358 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFS-------APCKQISVITCGDDK 465 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~-~~~~s-------~d~~~l~l~s~~~d~ 465 (1092)
.|...|.|+.|+.+...+.+++++..+.-||+.+.+. ... .+ ...-|. .+-.- .... .++.++.||
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~-~~--p~df~pt~~h~~~rs~~~g~~~d--~~~i~s~DG 85 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA-KL--PDDFVPTDMHLGGRSSGGGKGSD--TLLICSNDG 85 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhh-hC--CcccCCccccccccccCCCCCcc--eEEEEcCCc
Confidence 4777788999998888777776665555556554332 111 11 111111 11010 0122 578888999
Q ss_pred cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEE
Q 001358 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
.+.+-+ +.++.-+.+..|.+.+.+-.|+ +||.-|++++.||.|++|.- ++-...++.....+|.|++|.|+.+.++
T Consensus 86 kf~il~-k~~rVE~sv~AH~~A~~~gRW~--~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 86 RFVILN-KSARVERSISAHAAAISSGRWS--PDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIV 161 (737)
T ss_pred eEEEec-ccchhhhhhhhhhhhhhhcccC--CCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceE
Confidence 999998 8888888999999999998885 46778999999999999963 2333334455567899999999999888
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCC
Q 001358 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
.|. .+.+++=.+.....+-..+.|. +-|.++.|++..+.+++|++|-..+|||... ..+..-..|. .+|
T Consensus 162 ~c~-----g~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~e--y~I 230 (737)
T KOG1524|consen 162 FCQ-----GGHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEE--YAI 230 (737)
T ss_pred Eec-----CCeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeecccC-cccccCChhc--cce
Confidence 775 3347777777666677778887 9999999999999999999999999999754 4444444343 469
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeec
Q 001358 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1092)
++++|+|+ +.+++++.+ ++++ .
T Consensus 231 TSva~npd-~~~~v~S~n-t~R~---~----------------------------------------------------- 252 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSYN-TARF---S----------------------------------------------------- 252 (737)
T ss_pred eeeeeccc-cceeeeeee-eeee---c-----------------------------------------------------
Confidence 99999999 667766653 3331 0
Q ss_pred cccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEee-ecCCccccCcccccccCCcccc
Q 001358 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR-WPRNDLTLSTEATTKVPPRLYQ 784 (1092)
Q Consensus 706 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~-~~~~~~~~~~~~~~~~~~~~~~ 784 (1092)
....+.|..++||+||..++++...|.+.+=- ++..
T Consensus 253 -------------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~------------------ 289 (737)
T KOG1524|consen 253 -------------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQ------------------ 289 (737)
T ss_pred -------------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhh------------------
Confidence 01345678889999999998888888765411 0000
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 001358 785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 863 (1092)
Q Consensus 785 ~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~ 863 (1092)
+ + -+.+=++. ....|.+-|+.++-+ ..-.....+...+++- + +|+++.
T Consensus 290 -----------l--------~-------~~n~~~t~~~r~~I~vrdV~~~v~--d~LE~p~rv~k~sL~Y--~-hLvvaT 338 (737)
T KOG1524|consen 290 -----------L--------V-------SGNLKATSKSRKSITVRDVATGVQ--DILEFPQRVVKFSLGY--G-HLVVAT 338 (737)
T ss_pred -----------h--------h-------hccceeEeeccceEEeehhhhhHH--HHhhCccceeeeeece--e-EEEEEe
Confidence 0 0 00011111 234566666665443 2222445666666654 3 333333
Q ss_pred CCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEE
Q 001358 864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943 (1092)
Q Consensus 864 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1092)
...|++|.-........+.+....+.-+.-+ ...+++ ....+|.++..+...... ..+++... .....=.
T Consensus 339 -s~qvyiys~knwntpiiidgre~tr~lieq~-ek~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rt 408 (737)
T KOG1524|consen 339 -SLQVYIYSEKNWNTPIIIDGREDTRNLIEQG-EKYFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRT 408 (737)
T ss_pred -ccEEEEEecCCccCcEEEeccccchhHhhhh-hhheEE--ecCcEEEEEEecCceecC----CCCCCccc--cccccee
Confidence 3468888766554444444444333222211 112222 233456666665422111 11111111 0111122
Q ss_pred EecCCCEEEE--EeC-CcEEEEEc-CCceeeeeec-cCCCcCEEEEEEe----cCCCEEEEEeCCCcEEEEECCCCceEE
Q 001358 944 FHKDQTRFLL--VHE-THLAIYEA-EELTCLKQWF-PISSVPISQATFS----CDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1092)
Q Consensus 944 ~s~dg~~la~--~~d-~~v~lwd~-~~~~~~~~~~-~~h~~~v~~l~fs----~dg~~l~t~s~Dg~i~vwd~~~~~~~~ 1014 (1092)
.|-....|+. ..| ..+.+||. .+|+....-. -.|...|..++.. ++++.++.-...+.+.|=.+.+.....
T Consensus 409 lsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee 488 (737)
T KOG1524|consen 409 LSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEE 488 (737)
T ss_pred eecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchh
Confidence 3333444555 233 45888998 6666543211 2345556666554 355667766666667766555443322
Q ss_pred eeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001358 1015 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1015 ~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
++.-.. . ....++|+ |...+++|-.|+.+.+|=.+...
T Consensus 489 ~I~KiG---T-------mVhtLawn--dttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 489 EIYKIG---T-------MVHTLAWN--DTTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred hhhhhh---h-------hhhhhhhc--cccceeeeeccceEEEEEcCCcc
Confidence 222111 1 12346676 46789999999999999987544
No 173
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=6e-19 Score=192.08 Aligned_cols=285 Identities=19% Similarity=0.290 Sum_probs=220.8
Q ss_pred eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
+..|.||...|.|+.|...|. ++++|+.|..|+||..+++.++.. +.||.+.|+.++.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~ 242 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSS 242 (1113)
T ss_pred HHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccch
Confidence 456789999999999999998 699999999999999999999976 889999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE---Eec
Q 001358 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FEG 483 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~---~~~ 483 (1092)
+..++|+++.|..|++|.+..+..+. .+.+|++.|++++|+|- .+.+.||++++||..-.-.+.. ++.
T Consensus 243 ~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~ 313 (1113)
T KOG0644|consen 243 NNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKF 313 (1113)
T ss_pred hhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCc
Confidence 99999999999999999999998776 68899999999999994 3688899999999871111111 011
Q ss_pred -CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCC-EEEEEecCCCCceeEEEEe
Q 001358 484 -HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 484 -~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd 561 (1092)
...-+.++.| ..++..++|++.|+.-..|.+.-.. .+...+.-+.++.|-. +.+++- .+..+.+|+
T Consensus 314 ~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwn 381 (1113)
T KOG0644|consen 314 TEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWN 381 (1113)
T ss_pred ccccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeee----eeeEeeeee
Confidence 1123344444 4466778999999988888554221 1111222222332332 222222 266789999
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001358 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1092)
+.+|.+.+.+.+|. ..+..+.++|-+..+ .+++.||...|||+-.|..++..... + ..+....||+||..++..
T Consensus 382 l~~g~l~H~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 382 LYTGQLLHNLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred cccchhhhhhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecC
Confidence 99999999999988 899999999987766 45899999999999999888776633 2 346788999999999999
Q ss_pred eCCCeEEEEECCCCCee
Q 001358 641 ANENRIKILETPESNSV 657 (1092)
Q Consensus 641 ~~dg~i~iw~~~~~~~~ 657 (1092)
..-|.+.|.....+...
T Consensus 457 d~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 457 DDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCCCceEEeccCCCccc
Confidence 88899999887765443
No 174
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=8.5e-18 Score=171.32 Aligned_cols=254 Identities=13% Similarity=0.179 Sum_probs=185.3
Q ss_pred CceEEEEEcCcCcEEEEecCCCCceeeeeeeeeeccccc------ceeEEeeecCCCCcEEEEEECCC-CCEEEEEeCCC
Q 001358 346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS------MLFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKH 418 (1092)
Q Consensus 346 g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~------~~~~~~~l~~h~~~V~~l~~spd-g~~las~~~d~ 418 (1092)
|+ ++|.|+.|..|.|||+.--..+. +..-+.... ..-+.....+|+..|-+++|+.+ ...||+||.|.
T Consensus 192 gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~ 266 (463)
T KOG0270|consen 192 GN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK 266 (463)
T ss_pred cc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence 55 79999999999999986432221 000000000 00012235589999999999985 56789999999
Q ss_pred EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCC
Q 001358 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 498 (1092)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 498 (1092)
+|++||+.+|++.. ++..|.+.|.+++|+|.... +|++|+.|++|.+.|.+........-...+.|-.++|.+...
T Consensus 267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se 342 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE 342 (463)
T ss_pred eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc
Confidence 99999999998766 67789999999999998776 899999999999999885333222222556788889877643
Q ss_pred ccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc
Q 001358 499 IHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577 (1092)
Q Consensus 499 ~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 577 (1092)
..++++..||+++-+|++.. ++..++..|..+|.++++++.-..+++.+ ..++.|.+|+...-... ....|...
T Consensus 343 -~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~---s~d~~Vklw~~~~~~~~-~v~~~~~~ 417 (463)
T KOG0270|consen 343 -NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA---STDKVVKLWKFDVDSPK-SVKEHSFK 417 (463)
T ss_pred -eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec---cccceEEEEeecCCCCc-cccccccc
Confidence 57888899999999999987 67889999999999999999776655443 23778999998644331 12222222
Q ss_pred CCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceE
Q 001358 578 HNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLL 613 (1092)
Q Consensus 578 ~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~ 613 (1092)
-+...|.++.|+-..+ +.|+..+.++|||+.+...+
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 2456777888886655 45777888999999876543
No 175
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=2.9e-16 Score=163.07 Aligned_cols=496 Identities=12% Similarity=0.175 Sum_probs=286.0
Q ss_pred cCCCCceEEeecCCCceEEEEEcCcCcEEEE-ecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE--CCCC
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLW-DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW--SPDG 408 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iw-d~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~--spdg 408 (1092)
.|+.-|.|+.|+.+.. ++.+++ |..+.+| |+.+.. .....++--+ +. ...| +....- -...
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s-~~~~~~p~df-------~p---t~~h---~~~rs~~~g~~~ 75 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDS-VEVAKLPDDF-------VP---TDMH---LGGRSSGGGKGS 75 (737)
T ss_pred ccceeEEeecccccce-EEEecc-CceEEEeecccchh-hhhhhCCccc-------CC---cccc---ccccccCCCCCc
Confidence 5666788999999987 555554 4555555 544432 2111111000 00 0001 000000 0123
Q ss_pred CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce
Q 001358 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
..++.++.||.+.|-+-... .-+ ...+|.+.|.+-.|+|||. -|+++|.||.|++|. ++|-...++.....+|
T Consensus 76 d~~~i~s~DGkf~il~k~~r-VE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v 148 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR-VER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESI 148 (737)
T ss_pred ceEEEEcCCceEEEecccch-hhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCcee
Confidence 56888889998888875442 122 4678999999999999999 799999999999999 7777666666678899
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001358 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
.|++|.|+.+ ..+++. .+.+.+=-+.....+..+..|.+-|.++.|++..+.+++++. +-...+||.. |..+
T Consensus 149 ~c~~W~p~S~-~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~L 220 (737)
T KOG1524|consen 149 RCARWAPNSN-SIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANL 220 (737)
T ss_pred EEEEECCCCC-ceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Cccc
Confidence 9999987654 344443 355666666777778889999999999999999999999986 6779999965 4444
Q ss_pred EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001358 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1092)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1092)
..-..|. .+|++++|+|+ ..++.+|. +++| +..+ ....|..++||+||..+++|+..|.+.+
T Consensus 221 f~S~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 221 FTSAAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ccCChhc---cceeeeeeccc-cceeeeee-eeee------------ecCC-CccceEEEEEcCCCceeeccccCceEEE
Confidence 4555555 89999999999 55565554 3444 2211 2345889999999999999999988765
Q ss_pred EECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceeccc
Q 001358 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1092)
Q Consensus 649 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 728 (1092)
=..-+.+... +..-++......|.+-|+..+ .+..+.+
T Consensus 283 A~~ieq~l~~---------------------------------------~n~~~t~~~r~~I~vrdV~~~---v~d~LE~ 320 (737)
T KOG1524|consen 283 AYAIEQQLVS---------------------------------------GNLKATSKSRKSITVRDVATG---VQDILEF 320 (737)
T ss_pred eeeehhhhhh---------------------------------------ccceeEeeccceEEeehhhhh---HHHHhhC
Confidence 3322221110 111111112222333332211 1122222
Q ss_pred CCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001358 729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 808 (1092)
Q Consensus 729 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~ 808 (1092)
| ..+.... -.-..|+++.+. .+++|.-. -|++. ..++. .+..+.-+
T Consensus 321 p-----~rv~k~s--L~Y~hLvvaTs~-qvyiys~k-----------------nwntp-----iiidg----re~tr~li 366 (737)
T KOG1524|consen 321 P-----QRVVKFS--LGYGHLVVATSL-QVYIYSEK-----------------NWNTP-----IIIDG----REDTRNLI 366 (737)
T ss_pred c-----cceeeee--eceeEEEEEecc-EEEEEecC-----------------CccCc-----EEEec----cccchhHh
Confidence 2 2333333 222334444333 44444311 12211 01010 00000000
Q ss_pred EEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCC-----eEEEEEcCCCCCEEEEE--eCCCeEEEEEc-CCceeeE
Q 001358 809 ALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIG--MDDSTILIYNA-RSSEVIS 880 (1092)
Q Consensus 809 ~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~lasg--~~dg~v~iwd~-~~~~~~~ 880 (1092)
. ...+++......++.+|..+ |+.....+.+... -..+.+. ...|+.- .....+.+||. .+|+...
T Consensus 367 e--q~ek~fli~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLa---ndtLaird~ad~kvlhlFd~istgk~qg 440 (737)
T KOG1524|consen 367 E--QGEKYFLILDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLA---NDTLAIRDNADPKVLHLFDLISTGKRQG 440 (737)
T ss_pred h--hhhhheEEecCcEEEEEEec-CceecCCCCCCcccccccceeeecc---cceEEeecCCCCeeEEeccCCCCCcccC
Confidence 0 01123333333556676654 2222222211111 1233333 2244432 33346788998 7776542
Q ss_pred e--eccccCCeEEEEEc----CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE
Q 001358 881 K--LEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954 (1092)
Q Consensus 881 ~--l~~h~~~V~~l~~s----pdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~ 954 (1092)
. +-.|...|..++.. ++.+.++.....+.+.|=.+++-.. .+.....+..|..++|+..-+.|+--
T Consensus 441 Dgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgk--------ee~I~KiGTmVhtLawndttNiLcgl 512 (737)
T KOG1524|consen 441 DGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGK--------EEEIYKIGTMVHTLAWNDTTNILCGL 512 (737)
T ss_pred CccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCc--------hhhhhhhhhhhhhhhhccccceeeee
Confidence 2 22366667666664 4557788888888888877765211 11122223468899999998888878
Q ss_pred eCCcEEEEEcCC
Q 001358 955 HETHLAIYEAEE 966 (1092)
Q Consensus 955 ~d~~v~lwd~~~ 966 (1092)
.|+.+.||-..+
T Consensus 513 qDt~fsVWy~pn 524 (737)
T KOG1524|consen 513 QDTCFSVWYYPN 524 (737)
T ss_pred ccceEEEEEcCC
Confidence 999999997754
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=9.7e-18 Score=167.88 Aligned_cols=239 Identities=15% Similarity=0.183 Sum_probs=180.0
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC-
Q 001358 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD- 407 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd- 407 (1092)
...||+++|..++|.|-....+|+||.|.+|.||++..+....... -....|.||...|..++|+|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------epvv~L~gH~rrVg~V~wHPtA 143 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------EPVVELYGHQRRVGLVQWHPTA 143 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------cceEEEeecceeEEEEeecccc
Confidence 4579999999999999888899999999999999998776554322 112338999999999999995
Q ss_pred CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
.+.|++++.|.+|.+||+.+|+.+. ++. |...|.++.|+.||. ++++.+.|+.|+|||..+++.+..-.+|.+.
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 5788899999999999999998665 455 999999999999999 8999999999999999999999888888764
Q ss_pred eEE-EeecccCCccEEEEEe---cCCeEEEEEcCCCCceEEec--CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEe
Q 001358 488 VYS-LCPHAKENIHFIFSIS---VDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 488 v~~-i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1092)
-.. +.| -.++.++.+|. .+..+-+||....+....+. .....|.---|.+|...++.++ .||+.|+.|.
T Consensus 218 k~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~G---KGD~~IRYyE 292 (472)
T KOG0303|consen 218 KPARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCG---KGDSSIRYFE 292 (472)
T ss_pred CcceeEE--eccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEe---cCCcceEEEE
Confidence 322 223 34556555543 46789999987766543222 2334566667889999998887 4688899999
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCC
Q 001358 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1092)
+......-.+-..-....+-..+.|-|..
T Consensus 293 it~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 293 ITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred ecCCCceeEEecccccCCccccccccccc
Confidence 87665322211111112355666777653
No 177
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.5e-16 Score=169.54 Aligned_cols=561 Identities=15% Similarity=0.160 Sum_probs=326.1
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC----------CCcEEEEEEeCCC
Q 001358 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDDK 465 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d----------~~~l~l~s~~~d~ 465 (1092)
...-.++.|+|.| +||.|+.. .|.+-|..+-+.++ .+.-|...|+.+.|.|- ...++++++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3446778899866 77777665 48888988766555 67789999999999763 2456788999999
Q ss_pred cEEEEECCCCceeEEEecCCcceEEEeecccCCc--cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEec-CCC
Q 001358 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGR 542 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~ 542 (1092)
.|.+||...+..+..+..|..++..++|.+..+. .+|+......++.+|+.++++....+........++.+.| |.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 9999999999999999999999999999876554 4778888889999999999999888877776777788887 444
Q ss_pred EEEEEecCCCCceeEEEEeCC-------CCeEEEEEeeccc----------------cCCc------eEEEEEcCCCCEE
Q 001358 543 RLFSCGTSKEGESFLVEWNES-------EGAIKRTYQGLQL----------------QHNS------VSVVHFDTAKDQI 593 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~----------------~~~~------v~~~~~~~~~~~l 593 (1092)
.+...+. .+.+.+-+.- .|+..+.-..|.. .... ...++|+|.-+.+
T Consensus 170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 4444332 3334443321 1222222211110 0000 1124667876666
Q ss_pred EEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC--CEEEEEeCCCeEEEEECCCCCeeeec-----cc-ccc
Q 001358 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPESNSVDAA-----GV-LSD 665 (1092)
Q Consensus 594 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~-----~~-~~~ 665 (1092)
+-......+.++|++-..++..+..+.+. +.-+.+-|++ ..|.+...||.+.+|-.+.-...... .. ...
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~ 323 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGE 323 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhcccccc
Confidence 66667788999999998998888776553 4566666654 57899999999999987652111111 00 001
Q ss_pred cceeeeecCCcccccccccCCceeecCCCCCC-cccceeeccccccceeceeeccCccceecccCCccccccEEEEEEec
Q 001358 666 NLRKLSVNPISTVTGAGIANGSVSVNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 744 (1092)
Q Consensus 666 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 744 (1092)
.+.++. +.... ..+.+...|. ...++.--.+|...+|++..+......... ...-+..+.|..
T Consensus 324 Q~~~vr--~m~~~---------rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~-----~iel~~pf~f~~ 387 (1062)
T KOG1912|consen 324 QVHVVR--PMEEF---------RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS-----SIELVLPFDFNL 387 (1062)
T ss_pred ceEEEe--echhc---------ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc-----cccccccccccC
Confidence 111111 11000 0000000122 333444445677778886532211110000 000000111110
Q ss_pred CCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCe
Q 001358 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGV 824 (1092)
Q Consensus 745 ~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~ 824 (1092)
... .+.. .. +......+ +|.....+....|-.++-
T Consensus 388 ~~~-----------~v~k-----------------~~---------l~~LS~dg-~h~sGs~~~~~~p~p~~t------- 422 (1062)
T KOG1912|consen 388 STK-----------LVGK-----------------TS---------LISLSDDG-SHSSGSTCVRMRPMPELT------- 422 (1062)
T ss_pred cee-----------ehhh-----------------cc---------ccchhhcC-CCCCCceeeecccCcccc-------
Confidence 000 0000 00 00000000 133333333322211110
Q ss_pred EEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE
Q 001358 825 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS 904 (1092)
Q Consensus 825 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~ 904 (1092)
.+...+.+. +....-| ++|.|...|+|.++|+.++..-..+..|+..|.++.|-.... |++.
T Consensus 423 ------------~~~~~p~~n-~~~~~~p----LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSf 484 (1062)
T KOG1912|consen 423 ------------KVENDPGGN-TPAGTVP----LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSF 484 (1062)
T ss_pred ------------eeecCCCCC-ccceeee----eEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEe
Confidence 011111111 1122233 899999999999999999999999999999999999976543 4433
Q ss_pred e----------CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeeee
Q 001358 905 G----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQW 973 (1092)
Q Consensus 905 s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~~~~~~~~ 973 (1092)
+ .-+.+.|-|+.+|..+..+-++.++. .+|..+..|.-|++|++. .+.-+.+||+.+..+++..
T Consensus 485 sys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~de-----spI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~m 559 (1062)
T KOG1912|consen 485 SYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDE-----SPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLM 559 (1062)
T ss_pred eeccccccccceeeeEEEEEcccccccccccCCCCCc-----CcceeeeecccCceEEEEecccchHHHhhccchHHHHH
Confidence 2 23457788998876444333333322 479999999999999994 7788999999887776542
Q ss_pred ccCCCcC-EEEEEEe-cC----------------CCEEEEEeCCCcEEEEECCCCceEEe-ecc-ccccCCCCccCcccc
Q 001358 974 FPISSVP-ISQATFS-CD----------------CRMVFTSFVDGTLSIHEASNLEVQCR-ILS-TAYLRPTTSCLHVYP 1033 (1092)
Q Consensus 974 ~~~h~~~-v~~l~fs-~d----------------g~~l~t~s~Dg~i~vwd~~~~~~~~~-~~~-~~~~~~~~~~~~v~~ 1033 (1092)
. -.-+ |+.+.|+ |. .+..++.+.|. +++.+.......+ ... .....+ ....-
T Consensus 560 S--~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es--~~~~~~~~a~~~sdgsq~~~a~es----fafal 631 (1062)
T KOG1912|consen 560 S--LALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVES--RIYHITLSALVVSDGSQVNTAWES----FAFAL 631 (1062)
T ss_pred h--hcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccc--hheehhhhhhhhccccchhhHHHH----HHHHH
Confidence 2 2334 8889998 32 12344433232 3333222111100 000 000000 00111
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001358 1034 HAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 1034 ~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
+++||- +..++.|..+|.+.+||+.-
T Consensus 632 ~~mAwk---~d~lv~GD~~GNl~~WDlg~ 657 (1062)
T KOG1912|consen 632 CAMAWK---DDILVVGDVEGNLVVWDLGR 657 (1062)
T ss_pred Hhhhcc---CCeeEeecccCceeEEeccc
Confidence 345665 47999999999999999753
No 178
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=8.6e-17 Score=157.15 Aligned_cols=337 Identities=12% Similarity=0.155 Sum_probs=222.1
Q ss_pred EEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCceE
Q 001358 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL 613 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~ 613 (1092)
.+|||+|+++++++. ..+.+-|..+-+..+.+... +.|..+.|..|..++++ ...++.|.+|++...+-.
T Consensus 14 c~fSp~g~yiAs~~~-----yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSR-----YRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeeee-----eEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 689999999999973 45888888887776666653 36778889999888877 568889999999988877
Q ss_pred EEEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecC
Q 001358 614 TTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1092)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1092)
..+... ..++..++|||||+.+... ..+-.|.+|.+.+........
T Consensus 85 ckIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~------------------------------- 131 (447)
T KOG4497|consen 85 CKIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH------------------------------- 131 (447)
T ss_pred EEeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-------------------------------
Confidence 777643 3568999999999766554 458899999988763322110
Q ss_pred CCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCc
Q 001358 693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772 (1092)
Q Consensus 693 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~ 772 (1092)
....+..++|.+||++.+..+.....-.+++.
T Consensus 132 ----------------------------------------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~-------- 163 (447)
T KOG4497|consen 132 ----------------------------------------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS-------- 163 (447)
T ss_pred ----------------------------------------cccCceeEEECCCCceeeeeecccHHHHHHHH--------
Confidence 11224667788888866655543111111000
Q ss_pred ccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEE
Q 001358 773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSL 849 (1092)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l 849 (1092)
..+-|.+... +.+ ..-..+.+.|+|||..+|+-. +-.|..|.. .-.+..+
T Consensus 164 ------~c~~W~ll~~-----f~~----dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------------~lG~k~v 216 (447)
T KOG4497|consen 164 ------SCKAWILLKE-----FKL----DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------GLGLKFV 216 (447)
T ss_pred ------hhHHHHHHHh-----cCC----CcccccCceECCCCcEEEEecchhhheeeeeee------------ccceeEE
Confidence 0111211111 111 233345677888877777654 223333322 2346677
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEcCCcee---------------------------------------------------
Q 001358 850 AFNPHDNNVIAIGMDDSTILIYNARSSEV--------------------------------------------------- 878 (1092)
Q Consensus 850 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~--------------------------------------------------- 878 (1092)
+|+| .+++|++|+.|+.+||-+--+.+.
T Consensus 217 ~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~ 295 (447)
T KOG4497|consen 217 EWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETI 295 (447)
T ss_pred Eecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhh
Confidence 7888 777888888887777754322211
Q ss_pred ---------eEeec------cccCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceE
Q 001358 879 ---------ISKLE------GHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 941 (1092)
Q Consensus 879 ---------~~~l~------~h~~~V~~l~~spdg~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 941 (1092)
+..++ ...-.+..++||+|..+++|-.. -..+-+||+...+ ......... +|..
T Consensus 296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~-----l~avLiQk~----pira 366 (447)
T KOG4497|consen 296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK-----LHAVLIQKH----PIRA 366 (447)
T ss_pred hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh-----hhhhhhhcc----ceeE
Confidence 11111 11234667999999999998643 3569999998744 222222222 5899
Q ss_pred EEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCC
Q 001358 942 IQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus 942 l~~s~dg~~la~~-~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg 1000 (1092)
..|.|....|++. ....+++|......++.... .+-.|..+.|.-+|..++-++.|-
T Consensus 367 f~WdP~~prL~vctg~srLY~W~psg~~~V~vP~--~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 367 FEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK--KGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EEeCCCCceEEEEcCCceEEEEcCCCceEEecCC--CCceeeeEEecCCCcEEEEEcCCc
Confidence 9999999888884 55579999988766666543 347899999999999999998884
No 179
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.1e-17 Score=162.55 Aligned_cols=302 Identities=12% Similarity=0.110 Sum_probs=215.4
Q ss_pred eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceee-eeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
+...+.+|.+.|.++.||.+|+ +||+|+.|..++||+++.--..++ +.+. ..-..|...|.|++|
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~-------------~~~~~H~SNIF~L~F 113 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIG-------------VMEHPHRSNIFSLEF 113 (609)
T ss_pred hhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCce-------------eccCccccceEEEEE
Confidence 4466789999999999999998 799999999999999875432221 1111 012346789999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc-ee--EEE
Q 001358 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RT--YSF 481 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~--~~~ 481 (1092)
....++|.+|..+++|...|+++.+.+... .-....+.|..+..+|... .+++.+.++.|.+||..... .. ..+
T Consensus 114 ~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~ 190 (609)
T KOG4227|consen 114 DLENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLP 190 (609)
T ss_pred ccCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeee
Confidence 999999999999999999999997655421 1112334899999999988 79999999999999987654 22 222
Q ss_pred ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-------ecCCCCceEEEEEecCCCEEEEEecCCCCc
Q 001358 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-------YDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
........++.|+|.. ..+|++.+..+-+-+||.+....... +........++.|+|+|+.+.+.-. .
T Consensus 191 AN~~~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~ 265 (609)
T KOG4227|consen 191 ANSGKNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----G 265 (609)
T ss_pred cCCCccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----c
Confidence 3334456677787653 36888999999999999886554321 1111223467889999999987643 2
Q ss_pred eeEEEEeCCCCeEEEEEeeccc----cCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------------
Q 001358 555 SFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------------------- 610 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-------------------- 610 (1092)
..-.+||.-+..+...-..|.. ....+.+++|..+- .+++|+.+-.|++|.+...
T Consensus 266 ~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 266 KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 2345677776544322222221 11346778887764 4999999999999987531
Q ss_pred ---ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358 611 ---QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 611 ---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
..+..+.+| ...++.+.|+|...+|++.+-...++||.-.
T Consensus 345 ~i~~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 345 FIEKELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eecceeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 122334444 4457899999999999999999999999754
No 180
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.2e-18 Score=174.50 Aligned_cols=302 Identities=16% Similarity=0.232 Sum_probs=234.5
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+...|.+|.+.|..|.|...|. +|++|+.|..|.+||+.++.....+ ..||...|....|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f------------------~SGH~~NvfQaKF 193 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSF------------------ESGHCNNVFQAKF 193 (559)
T ss_pred hhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCccccc------------------ccccccchhhhhc
Confidence 34467889999999999999998 7999999999999999998877532 5689999998889
Q ss_pred CC--CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-
Q 001358 405 SP--DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF- 481 (1092)
Q Consensus 405 sp--dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~- 481 (1092)
-| +.+.|++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -|.+++.|+.+.-.|+.++.....+
T Consensus 194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceee
Confidence 88 5678999999999998776544444434457789999999999999887 7999999999999999887654333
Q ss_pred --ecCCc---ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCce------EEe------cCCCCceEEEEEecCCCEE
Q 001358 482 --EGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VDY------DAPGLGCTRMAYSANGRRL 544 (1092)
Q Consensus 482 --~~~~~---~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~------~~~~~~i~~~~~s~dg~~l 544 (1092)
..+.. ...+++..|. +...+++++.|..+++||.+..... ..+ ......|++++|+.++.-|
T Consensus 273 cr~~~~~~~v~L~~Ia~~P~-nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAVDPR-NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeccCCccceeeeeEecCCC-CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 22333 3567777665 3358999999999999997653322 111 1223369999999877766
Q ss_pred EEEecCCCCceeEEEEeCCCCe------------E-EEEEeeccccCCceEEEE-EcCCCCEEEEEeCCCeEEEEECCCC
Q 001358 545 FSCGTSKEGESFLVEWNESEGA------------I-KRTYQGLQLQHNSVSVVH-FDTAKDQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~------------~-~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1092)
++... +..|+++....+. . .+.++||.. ...|..+. |.|..+++++|+.-|.|.||+-.++
T Consensus 352 LaSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN-~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 352 LASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN-SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred eeeec----ccceEEeccccccCCCCCCCcchhhccchhhccccc-ccccceeeeccCccceEEecCccceEEEEecchh
Confidence 66554 4458888554322 2 234888872 23477764 5788899999999999999999999
Q ss_pred ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
+.+..+.+..+ .|+|+.-+|--..||+.+-|..|+||...+.
T Consensus 427 eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 427 EIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99999887766 5899999999999999999999999987544
No 181
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.6e-18 Score=193.54 Aligned_cols=251 Identities=14% Similarity=0.159 Sum_probs=197.1
Q ss_pred CceEEeecCCCce---EEEEEcCcCcEEEEecCCC---CceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCC
Q 001358 336 SPMSMDFHPVQHT---LLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 336 ~V~~v~~spdg~~---llasg~~d~~i~iwd~~~~---~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
.-..++|.+.|.. ++|.|..||.|.+||...- ..... ......|++.|..+.|++.+.
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~----------------la~~~~h~G~V~gLDfN~~q~ 129 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV----------------LATKSKHTGPVLGLDFNPFQG 129 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH----------------HhhhcccCCceeeeeccccCC
Confidence 6678899888775 6899999999999998762 11110 011556999999999999655
Q ss_pred -EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc--
Q 001358 410 -LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-- 486 (1092)
Q Consensus 410 -~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-- 486 (1092)
+||+|+.||.|.|||+..-+.-.... -....+.|.+++|+..-.. +|++++.+|.+.|||++..+.+-.+..+..
T Consensus 130 nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 130 NLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred ceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 99999999999999998744322110 1124567999999987766 799999999999999999988877766554
Q ss_pred ceEEEeecccCCccEEEEEecCC--eEEEEEcCCCC-ceEEecCCCCceEEEEEecCC-CEEEEEecCCCCceeEEEEeC
Q 001358 487 PVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
.+..+.|+|+...+++++...|+ .|.+||++... ...++..|...|.++.|++.+ ++|++++. |+.|.+|+.
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN~ 283 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWNP 283 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEecC
Confidence 46788999876554444444444 49999998655 455778999999999999977 77888875 667999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc
Q 001358 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 611 (1092)
++++.+..+.... +.+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus 284 ~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 284 NTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCceEeeecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999998755 8899999999887 66778999999999987654
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.8e-17 Score=174.15 Aligned_cols=262 Identities=15% Similarity=0.198 Sum_probs=196.5
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEcc-----CCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC
Q 001358 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-----~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~ 465 (1092)
.+..|...|++++|.|-...|++++.||++++|+++ ....+.++.++.+|.++|.|++++++++ .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 477799999999999999999999999999999993 3344667889999999999999999999 799999999
Q ss_pred cEEEEECC------CC----ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--ceE
Q 001358 466 TIKVWDAV------TG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCT 533 (1092)
Q Consensus 466 ~i~vwd~~------~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~ 533 (1092)
+|+.|++. .. .....+.||.+.|+.++++..++ .|++++.||+++.|+...... .++..... -..
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 99999543 11 23457789999999999977664 799999999999998766555 33332222 223
Q ss_pred EEEEecCC-CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc----cCCceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001358 534 RMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 534 ~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1092)
++.+.... ...++... .+.-.+.+...+..+..+..... ....+..+..+|.+...+++.+|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 34443322 11222111 11223344444444444432221 12457788899999999999999999999999
Q ss_pred CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccc
Q 001358 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 663 (1092)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 663 (1092)
++..+.....+ ...+.++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus 520 ~~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 520 TGKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ccccchheeec--cceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 99999888766 446899999999999999999999999999877666554433
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1e-16 Score=166.96 Aligned_cols=246 Identities=17% Similarity=0.159 Sum_probs=163.9
Q ss_pred EEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcceEEEeecccCCccEEEEEecCCeEEE
Q 001358 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKA 513 (1092)
Q Consensus 435 ~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~v 513 (1092)
.++.||++.|+|++|+.||. +|++|+.|-.+.|||.-..+.++.+ .||...|.++.|.|..+..++++|+.|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 36889999999999999999 8999999999999999988888877 68999999999999999999999999999999
Q ss_pred EEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC-CE
Q 001358 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQ 592 (1092)
Q Consensus 514 wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 592 (1092)
+|++..+.... + + ...+..+.+..|. ..|..++-.|++ +.
T Consensus 122 fdl~~~~~~~~-------------------------d---~--------~~~~~~~~~~cht---~rVKria~~p~~Pht 162 (758)
T KOG1310|consen 122 FDLDSSKEGGM-------------------------D---H--------GMEETTRCWSCHT---DRVKRIATAPNGPHT 162 (758)
T ss_pred Eeccccccccc-------------------------c---c--------Cccchhhhhhhhh---hhhhheecCCCCCce
Confidence 99875332110 0 0 0011122233444 678888888888 77
Q ss_pred EEEEeCCCeEEEEECCCCceEE--------EEeCCCCCCCCceEEEcc-CCCEEEEEeCCCeEEEEECCCC-Ceeeeccc
Q 001358 593 ILAAGDDHVIKIWDMNKVQLLT--------TIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPES-NSVDAAGV 662 (1092)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~--------~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~ 662 (1092)
+.++++||+++-+|++....-. ........-...++..+| +..+|++|+.|-..++||.... +.+..-..
T Consensus 163 fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~ 242 (758)
T KOG1310|consen 163 FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGT 242 (758)
T ss_pred EEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcc
Confidence 8899999999999998632110 001111122356889998 5678999999999999995321 11111000
Q ss_pred ----ccccceeee-ecCCcccccccccC------CceeecCCCCCCcccceeeccccccceeceeeccCcccee
Q 001358 663 ----LSDNLRKLS-VNPISTVTGAGIAN------GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1092)
Q Consensus 663 ----~~~~v~~~~-~~~~~~~~~~~~~~------~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 725 (1092)
......|+. |+|......-+... ..+.| +|+|..++..-....|.++++...+......
T Consensus 243 ~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf----npNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 243 MNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF----NPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred ccCCCCcccchhheecCccccCcccccccceeeeEEEEE----CCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 111111222 22322211111111 12344 6788877777766778888877655443333
No 184
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.9e-15 Score=141.63 Aligned_cols=286 Identities=12% Similarity=0.129 Sum_probs=197.7
Q ss_pred cEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001358 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
.|.+-+++|.+++++++..+|.|-+..+..-.. +.... .....+.. ..+|..++..++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa~~---------~gk~~iv~----eqahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSAEP---------PGKLKIVP----EQAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---cccCC---------CCCcceee----ccccCCCeeeeeee--hh
Confidence 355567899999999999999999998764321 11100 11111111 23599999999998 46
Q ss_pred EEEEEeCCeEEEEEcCCcee------eEEe-------cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee
Q 001358 816 YLFSASGGVISLYIVMTFKT------ILTI-------MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 816 ~l~~~sdg~i~iwd~~~~~~------~~~~-------~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1092)
+|++++||.|+-|....... .... ...-..|+++-+.|..+ -++.++.|+.++-||+++|+....+
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCEEEEEE
Confidence 78889999999998754321 1111 11235789999999444 4555558999999999999999999
Q ss_pred ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC----CCCCceEEEEecCCCEEEEEeCCc
Q 001358 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT----LAPSETHIQFHKDQTRFLLVHETH 958 (1092)
Q Consensus 883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~v~~l~~s~dg~~la~~~d~~ 958 (1092)
+||++.|.+++--.....+.||++||++||||.++++... .+...+.... .+.+| .+..-+..+|++|....
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~ 228 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPK 228 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCcee--EEEeccCceEEecCCCc
Confidence 9999999999985566788999999999999999976444 2222222111 11223 45556778999988889
Q ss_pred EEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEE
Q 001358 959 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1038 (1092)
Q Consensus 959 v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1038 (1092)
+.+|.+.+.++...+. -..++..+.|-.| .+++++..+.|.-|.+. |.+..... .. ....++.+...
T Consensus 229 lslwhLrsse~t~vfp--ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~--s~~c~s~s~~~ 295 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFP--IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIP------VE--STACYSASWQT 295 (325)
T ss_pred eeEEeccCCCceEEEe--cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEecc------CC--ccceeeecccC
Confidence 9999999988877643 3567888888654 67788888899999886 43332222 11 12234444555
Q ss_pred CCCCCCEEEEEeCCCcEEEEe
Q 001358 1039 HPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1039 ~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
+| -..+-.++..+.+.++.
T Consensus 296 ~p--~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 296 SP--IKFISIAGFSNKLHILK 314 (325)
T ss_pred Cc--eEEEEecccceeeeeee
Confidence 66 35666777777777753
No 185
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=8.8e-17 Score=158.52 Aligned_cols=292 Identities=13% Similarity=0.172 Sum_probs=203.5
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCC-CceE
Q 001358 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APG-LGCT 533 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~-~~i~ 533 (1092)
.++++-..|.|++||..+|+.+..|+++...++.+.|........+.+++.||+|++||++.......+. .+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 6788888999999999999999999999999999999875556789999999999999999877655433 333 3566
Q ss_pred EEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE-EEEEe-eccccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCC
Q 001358 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQ-GLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~ 610 (1092)
+++..-.++.++++..-...+..|.+||.+..+. ++.+. .|. +.|+++.|+|.. +.|++||.||-|.+||++..
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~---DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN---DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc---CcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 6666667888888776666688899999998776 55543 344 899999999975 67889999999999999754
Q ss_pred c----eEEEEeCCCCCCCCceEEEccCC-CEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccC
Q 001358 611 Q----LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1092)
Q Consensus 611 ~----~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 685 (1092)
. ++.++. ....|..+.|..++ +.+.+.+..++..+|+++.+.....+....-..... .. -..
T Consensus 199 ~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~-r~---------~~~ 265 (376)
T KOG1188|consen 199 NEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDL-RK---------EDN 265 (376)
T ss_pred cchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhH-Hh---------hhh
Confidence 2 223332 23458899999876 458888899999999999886444333211100000 00 000
Q ss_pred CceeecCCCCCCcccceeecc-ccccceeceeeccCc-cceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeee
Q 001358 686 GSVSVNEDPKEDVKPEISVEA-ENKSEVEKPLFARPS-ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1092)
Q Consensus 686 ~~~~~~~~~s~d~~~l~s~~~-d~~i~~w~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~ 763 (1092)
....++.....++...+.++. .++..++-+....+. ..........+|..-|.++.|...+..+.+++.||.+.+|..
T Consensus 266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 011112221233444444443 566666665432221 222233344557777888899989999999999999999985
Q ss_pred c
Q 001358 764 P 764 (1092)
Q Consensus 764 ~ 764 (1092)
+
T Consensus 346 ~ 346 (376)
T KOG1188|consen 346 E 346 (376)
T ss_pred C
Confidence 3
No 186
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=3.5e-16 Score=150.32 Aligned_cols=260 Identities=18% Similarity=0.220 Sum_probs=186.5
Q ss_pred EecccCCCCceEEeecCCCceEEEEEcCc-------CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEE
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d-------~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~ 400 (1092)
.+|..|.++||.++-+|-.+++|++...+ -.+.||.+........ ..- ......+-+.+-+.|.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~t-------lE~v~~Ldteavg~i~ 127 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SST-------LECVASLDTEAVGKIN 127 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cch-------hhHhhcCCHHHhCcee
Confidence 45677889999999999988899987653 2367888754321100 000 0000111224566999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCCccc-eE--EecccccceeEEEeeC--CCCcEEEEEEeCCCcEEEEECCCC
Q 001358 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QL--EIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~-~~--~l~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
|+.|.|++..||+-. |..|.+|+++.+..+.. .. .-.+|....++-+|+| ||. .+++. .|+++..||+++.
T Consensus 128 cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt-~d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 128 CVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATT-SDSTLQFWDLRTM 203 (370)
T ss_pred eEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEe-CCCcEEEEEccch
Confidence 999999999999875 77799999998765211 10 1113566788999999 666 45554 4899999999998
Q ss_pred ceeEEE-ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCceEEEEEecCCCEEE-EEecCCC
Q 001358 476 SRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLF-SCGTSKE 552 (1092)
Q Consensus 476 ~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~-~~~~~~~ 552 (1092)
++...+ ..|...|..+.|+|.. ..+|++++.||.|++||.+..+ ++..+..|.+.+.++.|+|.-..|+ +++.
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S--- 279 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS--- 279 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC---
Confidence 887776 5688899999998764 3689999999999999998755 5668899999999999999766555 4443
Q ss_pred CceeEEEEeCCCCe-----------------------------EEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCeE
Q 001358 553 GESFLVEWNESEGA-----------------------------IKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVI 602 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i 602 (1092)
+..|.+|...+-. .+.++..|. +.|++++|+....++++ -+.||.+
T Consensus 280 -Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 280 -DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred -CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceE
Confidence 5567777433211 123445555 89999999988887654 7899998
Q ss_pred EEEECC
Q 001358 603 KIWDMN 608 (1092)
Q Consensus 603 ~iwd~~ 608 (1092)
.|=.+.
T Consensus 356 iIs~V~ 361 (370)
T KOG1007|consen 356 IISSVP 361 (370)
T ss_pred EeecCC
Confidence 876553
No 187
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=6.6e-17 Score=153.42 Aligned_cols=289 Identities=17% Similarity=0.214 Sum_probs=199.3
Q ss_pred CcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeec-CCCCcEEE
Q 001358 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNR 401 (1092)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~-~h~~~V~~ 401 (1092)
|......|++|...|+++.|-.+++ |.+|..-|.|++|++.+...+.. +. .|...|+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~ 61 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITN 61 (323)
T ss_pred CCCCeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeec
Confidence 3444577889999999999999996 78899999999999999876543 33 36788999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC-c-----------EEE
Q 001358 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK-T-----------IKV 469 (1092)
Q Consensus 402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~-~-----------i~v 469 (1092)
+.--|+ ..|.+-+.|..+.+|++..+..+ ..|.-.++++-|.+-. ++..+... . +.+
T Consensus 62 lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfS----l~~~~k~~eqll~yp~rgsde~h~ 130 (323)
T KOG0322|consen 62 LQSIPN-DSLDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFS----LVKKPKNSEQLLEYPSRGSDETHK 130 (323)
T ss_pred eeecCC-cchhhcCCCceEEEEEccCcceE------EEeeeeccccccccce----eccCCCcchhheecCCcccchhhh
Confidence 998887 56777789999999999875432 2355566666665421 11111111 1 111
Q ss_pred EECCCCceeEEE----ecCCcceEEEeecccC-CccEEEEEecCCeEEEEEcCCCCceE----------EecCCCCceEE
Q 001358 470 WDAVTGSRTYSF----EGHGAPVYSLCPHAKE-NIHFIFSISVDGKIKAWLYDSLGARV----------DYDAPGLGCTR 534 (1092)
Q Consensus 470 wd~~~~~~~~~~----~~~~~~v~~i~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~----------~~~~~~~~i~~ 534 (1092)
-|......++.. .+-.+.+.+..+.... ..-++++|..+|.+.+||+.++.... ....|..++.+
T Consensus 131 ~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvls 210 (323)
T KOG0322|consen 131 QDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLS 210 (323)
T ss_pred hccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCccee
Confidence 111111111111 1123344444422221 22357788899999999999874333 34557778999
Q ss_pred EEEecCCCEEEEEecCCCCceeEEEEeCC--CCeEE-EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001358 535 MAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
+.+.+.-..=++++. ...+..|+++ ++.+. +.... ..+..|..+.+-||++.+++++.|+.||||+.++.+
T Consensus 211 ldyas~~~rGisgga----~dkl~~~Sl~~s~gslq~~~e~~--lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~ 284 (323)
T KOG0322|consen 211 LDYASSCDRGISGGA----DDKLVMYSLNHSTGSLQIRKEIT--LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN 284 (323)
T ss_pred eeechhhcCCcCCCc----cccceeeeeccccCcccccceEE--ecCCCccceEEccCCcEEeecccCCcEEEEEeccCC
Confidence 998876555555544 3346666654 33322 11111 123568889999999999999999999999999999
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
++..+..|. ..|++++|+|+..++|.++.|+.|.+|++
T Consensus 285 pLAVLkyHs--agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 285 PLAVLKYHS--AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred chhhhhhhh--cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999886 46999999999999999999999999986
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=6.1e-17 Score=170.23 Aligned_cols=270 Identities=14% Similarity=0.193 Sum_probs=192.3
Q ss_pred eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
..+|.-|.+.|..++|.|-.. .|++++.||++.+|+++....-.... ..+...+.+|.++|-|+++++
T Consensus 287 k~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~-----------~epi~tfraH~gPVl~v~v~~ 354 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKD-----------VEPILTFRAHEGPVLCVVVPS 354 (577)
T ss_pred eeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccc-----------eeeeEEEecccCceEEEEecC
Confidence 358889999999999999987 79999999999999994321111101 111223789999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCC-------CccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358 407 DGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~-------~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
+++.+.+|+.||+|+.|++.... .......+.||++.|+.+++|+... .|++|+.||+++.|+...... .
T Consensus 355 n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~ 431 (577)
T KOG0642|consen 355 NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-C 431 (577)
T ss_pred CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-c
Confidence 99999999999999999664221 1112235779999999999999888 699999999999999766555 3
Q ss_pred EEecCC--cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCceEEEEEecCCCEEEEEecC
Q 001358 480 SFEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 480 ~~~~~~--~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
+|.... +.-.++.+..+.- ...++...-+.-.+.++........+... ...+..+...|.+...+++..
T Consensus 432 ~f~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he- 509 (577)
T KOG0642|consen 432 TFGEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE- 509 (577)
T ss_pred ccCCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc-
Confidence 332221 2223343321110 11222222222223333333333332211 124667788888888888875
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001358 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
+..|+++|..++..+.....|. ..++++++.|+|.+|++++.|+.+++|.+....++.....+
T Consensus 510 ---d~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 ---DRSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ---CCceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 6679999999999999998888 89999999999999999999999999999877766555443
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=1.4e-14 Score=160.05 Aligned_cols=198 Identities=12% Similarity=0.142 Sum_probs=128.0
Q ss_pred eEEEEecCCCEEEEEe--CCeEEEEEcCC-c---eeeEEecCCCCCeEEEEEcCCCCCEEE-EEeCCCeEEEEEcCCcee
Q 001358 806 PCFALSKNDAYLFSAS--GGVISLYIVMT-F---KTILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~---~~~~~~~~~~~~i~~l~~s~~d~~~la-sg~~dg~v~iwd~~~~~~ 878 (1092)
..++++|+++++++++ ++.|.+|++.+ + +.+..+. +.....+++++| ++++++ +...++.|.+||+.+...
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCc
Confidence 4566777777776665 46677777753 2 1222222 223466788999 777775 455669999999986332
Q ss_pred eE-------eeccccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC--CceeeeeeeecCCCCcCCCCCceEEEEecCC
Q 001358 879 IS-------KLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 879 ~~-------~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 948 (1092)
+. ... .......++|+|||++++++.. +++|.+|+++. ++......+...............+.|+|||
T Consensus 161 l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 111 1234678999999999988876 89999999984 3322222222211111111234568999999
Q ss_pred CEEEEE--eCCcEEEEEcCCce----eeeeeccCCCcCEEEEEEecCCCEEEEEeC-CCcEEEEECC
Q 001358 949 TRFLLV--HETHLAIYEAEELT----CLKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEAS 1008 (1092)
Q Consensus 949 ~~la~~--~d~~v~lwd~~~~~----~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~-Dg~i~vwd~~ 1008 (1092)
++++++ .++.|.+|++.... .+..... ......+.|+|||++|+++.. +++|.+|+++
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999986 45789999986432 2222111 124557899999999998775 8999999875
No 190
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=6.3e-16 Score=154.20 Aligned_cols=293 Identities=11% Similarity=0.072 Sum_probs=208.9
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC---CccceEEec--ccccceeEEEeeCCCCcEEEEEEeCCCc
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~---~~~~~~~l~--~h~~~v~~~~~s~d~~~l~l~s~~~d~~ 466 (1092)
+.+|.+.|.++.||.++++||+|+.|..+++|+++..- ..+.+ .+. .|...|.|++|....+ .+.+|+.+++
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI-~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~ 128 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI-GVMEHPHRSNIFSLEFDLENR--FLYSGERWGT 128 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc-eeccCccccceEEEEEccCCe--eEecCCCcce
Confidence 67899999999999999999999999999999986321 11111 122 3557899999998887 8999999999
Q ss_pred EEEEECCCCceeEEEec--CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEecCC
Q 001358 467 IKVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG 541 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~dg 541 (1092)
|...|+++.+.+..+.. ..+.|+.+..+|. ...|++.+.+|.|.+||.+.... .............+.|+|-.
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999999999988752 2348999988776 35899999999999999986552 33344445578889999988
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeE-EE---EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001358 542 RRLFSCGTSKEGESFLVEWNESEGAI-KR---TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
..|+....... -+-+||.+.... +. .+.+.......-.++.|+|+|+++++.-....-.+||+.+..+.....
T Consensus 207 P~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 207 PALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred ceeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 77666554333 378899875432 11 122222112234567899999999987766667788887754432222
Q ss_pred CCCC-----CCCCceEEEccCCCEEEEEeCCCeEEEEECCCC-----------------------Ceeeeccccccccee
Q 001358 618 AGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPES-----------------------NSVDAAGVLSDNLRK 669 (1092)
Q Consensus 618 ~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-----------------------~~~~~~~~~~~~v~~ 669 (1092)
.|.. ...+.+++|-.|- .+++|+++-.|++|.+... ..+..+++|..-+..
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 2211 2235677776554 4999999999999998732 123345555555555
Q ss_pred eeecCCcccccccccCCceeecCCCCCCcccceeeccccccceece
Q 001358 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1092)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~ 715 (1092)
+.|+ |...++++.+-++.+++|.-
T Consensus 363 VRF~----------------------~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 363 VRFS----------------------QHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eeec----------------------CCcceEeccchhhheecccc
Confidence 5554 56677888888899999973
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.6e-16 Score=153.54 Aligned_cols=277 Identities=15% Similarity=0.181 Sum_probs=194.0
Q ss_pred EEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEEcc
Q 001358 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYH 426 (1092)
Q Consensus 349 llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~las~~~d~~i~iwd~~ 426 (1092)
.+|++-..|+|++||..+|+.+.. +++|...++.++|.. ....+.+|+.||+|++||+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 578888889999999999988875 667888888999987 46788999999999999999
Q ss_pred CCCCccceEEecccc-cceeEEEeeCCCCcEEEEEEe----CCCcEEEEECCCCce-eEEE-ecCCcceEEEeecccCCc
Q 001358 427 GGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG----DDKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKENI 499 (1092)
Q Consensus 427 ~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~l~l~s~~----~d~~i~vwd~~~~~~-~~~~-~~~~~~v~~i~~~~~~~~ 499 (1092)
+......+ ...+|. .+..+++..-.++ ++++|. .|-.|.+||++..+. +..+ ..|...|++++|+|+ +.
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DP 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CC
Confidence 87655443 355666 4667777765666 566664 466799999998766 5444 679999999999987 45
Q ss_pred cEEEEEecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEecCC-CEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001358 500 HFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
.+|++||.||.|.++|+..... +...-.+...|..+.|..++ +.+.+.+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 7999999999999999876533 22233455679999999988 34555543 4458999998887655444321
Q ss_pred cc---------CCceEEEEEcCCCCEEEE-EeCCCeEEEEECC---CCceE---EEEeCCCCCCCCceEEEccCCCEEEE
Q 001358 576 LQ---------HNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN---KVQLL---TTIDAGGGLPENPRICFNKNGTLLAV 639 (1092)
Q Consensus 576 ~~---------~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~---~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1092)
.. ...+.......++...+. |+.-+...++-+. ++... ..+.+ ++...|+++.|...+.++.+
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 00 011111111123344444 4435666665443 33332 33332 23455788999999999999
Q ss_pred EeCCCeEEEEECCC
Q 001358 640 IANENRIKILETPE 653 (1092)
Q Consensus 640 ~~~dg~i~iw~~~~ 653 (1092)
|+.||.+.+|..+.
T Consensus 334 GGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 334 GGEDGLLQAWKVED 347 (376)
T ss_pred cCCCceEEEEecCC
Confidence 99999999999643
No 192
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.2e-15 Score=140.19 Aligned_cols=278 Identities=17% Similarity=0.201 Sum_probs=193.3
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCC---CceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~---~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
.|..-++||.++ +|+.|..+|+|.+..+.+- +.... ...+.....+|.++|..++|. ..+|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~------------gk~~iv~eqahdgpiy~~~f~--d~~Ll 76 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPP------------GKLKIVPEQAHDGPIYYLAFH--DDFLL 76 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCCC------------CCcceeeccccCCCeeeeeee--hhhee
Confidence 667778999998 6899999999999988642 11110 001111246899999999998 55777
Q ss_pred EEeCCCEEEEEEccCCCC---ccceEE--ecccc-----cceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001358 413 VAYSKHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~---~~~~~~--l~~h~-----~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
+|+ ||.|+=|.+..... .+...+ ...|. -.|+++...|... -++.++.|+.++.||+++|+..++++
T Consensus 77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEc
Confidence 775 59999998864322 111101 11222 2588999998877 46666689999999999999999999
Q ss_pred cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC----------ceEEEEEecCCCEEEEEecCCC
Q 001358 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----------GCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
||++.|.++.-.. ....+++|+.||++|+||.++.+....+..-.. .| .+..-+..++++++.
T Consensus 154 GHtDYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgG--- 226 (325)
T KOG0649|consen 154 GHTDYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGG--- 226 (325)
T ss_pred CCcceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCC---
Confidence 9999999987632 224689999999999999999988776543221 23 445566778988864
Q ss_pred CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
..+.+|++++.+....+.-. ..+..+.|.. ..++++++.+.|.-|.+. |.+....+...+ ...+..++.
T Consensus 227 --p~lslwhLrsse~t~vfpip----a~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~ 295 (325)
T KOG0649|consen 227 --PKLSLWHLRSSESTCVFPIP----ARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQT 295 (325)
T ss_pred --CceeEEeccCCCceEEEecc----cceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccC
Confidence 34899999999998888764 4777888865 468888888889999874 444444443322 234444443
Q ss_pred C-CCEEEEEeCCCeEEEE
Q 001358 633 N-GTLLAVIANENRIKIL 649 (1092)
Q Consensus 633 ~-~~~l~~~~~dg~i~iw 649 (1092)
. -+++-.++....+.|+
T Consensus 296 ~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 296 SPIKFISIAGFSNKLHIL 313 (325)
T ss_pred CceEEEEecccceeeeee
Confidence 2 3345555555666554
No 193
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=1.8e-15 Score=145.70 Aligned_cols=292 Identities=18% Similarity=0.251 Sum_probs=206.4
Q ss_pred eEecccCCCCceEEeec--CCCceEEEEEcC----cCcEEEEec--CCCCceeeeeeeeeecccccceeEEeeecCCCCc
Q 001358 327 AQTLIEGSSSPMSMDFH--PVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~s--pdg~~llasg~~----d~~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~ 398 (1092)
+..+..+- .+.++.|| |+.+..||.|+. .+.|.|-.+ ++++.+..-+ ..|.-+
T Consensus 38 iy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP 98 (364)
T KOG0290|consen 38 IYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP 98 (364)
T ss_pred EEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence 45555555 78888998 677777999985 244555444 4455443322 248899
Q ss_pred EEEEEECCCCC-----EEEEEeCCCEEEEEEccCCC-CccceEE-----ecccccceeEEEeeCCCCcEEEEEEeCCCcE
Q 001358 399 VNRVVWSPDGS-----LLGVAYSKHIVQLYAYHGGS-DARQQLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 399 V~~l~~spdg~-----~las~~~d~~i~iwd~~~~~-~~~~~~~-----l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
++.+-|.||.+ +||+++ | .+++|.+...+ .+..... -..+..++++..|+.-... ++.+++-|-+.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC 175 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC 175 (364)
T ss_pred ccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence 99999999873 566653 3 49999997422 1111111 1246679999999876665 89999999999
Q ss_pred EEEECCCCce---eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCC--CCceEEEEEecCC
Q 001358 468 KVWDAVTGSR---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAP--GLGCTRMAYSANG 541 (1092)
Q Consensus 468 ~vwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~--~~~i~~~~~s~dg 541 (1092)
.|||+++|.. ...+-.|...|..++|.. +..+.+++.+.||.+|++|++..+.-. .++.+ ..+...++|++..
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 9999999733 556778999999999975 345799999999999999999866433 33333 3477888888855
Q ss_pred -CEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceE---EE
Q 001358 542 -RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLL---TT 615 (1092)
Q Consensus 542 -~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~---~~ 615 (1092)
+++++...+ ...|.+.|++. ...+..+++|. ..|+.++|.|.. ..+.+++.|..+.+||+...-.. ..
T Consensus 255 pnymATf~~d---S~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 255 PNYMATFAMD---SNKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred chHHhhhhcC---CceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 566655542 44588999885 45678899988 999999999974 67888999999999999753220 00
Q ss_pred EeCCCCCCCCceEEEcc-CCCEEEEEeCCCeEEE
Q 001358 616 IDAGGGLPENPRICFNK-NGTLLAVIANENRIKI 648 (1092)
Q Consensus 616 ~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i 648 (1092)
+-.-.....|+.+.|++ .+..++++.. +.+.+
T Consensus 329 ilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 329 ILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 10111234689999996 6778887765 34444
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=2.5e-14 Score=143.06 Aligned_cols=242 Identities=11% Similarity=0.145 Sum_probs=186.9
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC
Q 001358 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
...+..+.|+.|...|..|+.|| -++|+.+...... ........|.-+-|+.. .+.+|+...-..+++.+.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccC
Confidence 34677788999999999999999 7888887643211 11122335666667654 213344433345999999988
Q ss_pred ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC---CCceEEEEEecCCCEEEEEecCCC
Q 001358 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---GLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
..+..+. ...+|.++.++. ++|+++-.+. |.|||++..+...++... ...+..+++++.+.+++.-+..
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-- 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-- 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC--
Confidence 8887775 566788888743 4666665554 999999998887766543 3356666666777788876542
Q ss_pred CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
..+.|++||..+-+.+..+..|. +.+.+++|+++|..++++|+.|+ |||+.+.+|+.+..+........|.+++|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred CCceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 25669999999999999999888 99999999999999999999987 699999999999999866555678899999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCC
Q 001358 632 KNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
|++++|++.++.++|.+|.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998854
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=2.1e-14 Score=158.65 Aligned_cols=275 Identities=14% Similarity=0.194 Sum_probs=178.1
Q ss_pred eEEEEEcCcCcEEEEecCC-CCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe-CCCEEEEEEc
Q 001358 348 TLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY 425 (1092)
Q Consensus 348 ~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~ 425 (1092)
+++++...++.|.+||+.+ |+...... + .+.+.+..++++||+++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 3555667789999999975 33221111 1 1345677899999999997764 4778999999
Q ss_pred cCCCCccceEEecccccceeEEEeeCCCCcEEEEEE-eCCCcEEEEECCC-Cc---eeEEEecCCcceEEEeecccCCcc
Q 001358 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVT-GS---RTYSFEGHGAPVYSLCPHAKENIH 500 (1092)
Q Consensus 426 ~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~-~~d~~i~vwd~~~-~~---~~~~~~~~~~~v~~i~~~~~~~~~ 500 (1092)
.....+...... ...+....++|+|+++. ++++ ..++.|.+|++++ +. .+..+.+ ......++++ ++++
T Consensus 65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~--p~g~ 138 (330)
T PRK11028 65 ADDGALTFAAES-PLPGSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANID--PDNR 138 (330)
T ss_pred CCCCceEEeeee-cCCCCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeC--CCCC
Confidence 732222211122 12335678999999994 4444 4588999999874 32 2333332 2334556664 4666
Q ss_pred EEE-EEecCCeEEEEEcCCCCceEE-----e-cCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC--Ce--EEE
Q 001358 501 FIF-SISVDGKIKAWLYDSLGARVD-----Y-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GA--IKR 569 (1092)
Q Consensus 501 ~l~-s~~~dg~i~vwd~~~~~~~~~-----~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~--~~--~~~ 569 (1092)
+++ +...++.|.+||+++...... . ...+.....++|+|||++++++.. .++.|.+|++.. ++ .+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence 664 555679999999986432211 1 112345678999999999988753 366799999873 33 233
Q ss_pred EEeeccc---cCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCc----eEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001358 570 TYQGLQL---QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 570 ~~~~~~~---~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
.+..... +......+.++|++++++++. .++.|.+|++.... .+...... .....++++|+|++|+++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence 3332210 111234688999999999975 47899999986433 22222221 2356899999999999887
Q ss_pred C-CCeEEEEECC
Q 001358 642 N-ENRIKILETP 652 (1092)
Q Consensus 642 ~-dg~i~iw~~~ 652 (1092)
. +++|.+|++.
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 6 8999999875
No 196
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=3.1e-17 Score=178.88 Aligned_cols=288 Identities=15% Similarity=0.234 Sum_probs=225.1
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001358 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1092)
+.++.+.+|. +.|+|+.|...|.++++|+.|..++||..+++.++....+|.+ .++.++.+.+..++++++.|..
T Consensus 181 k~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 181 KNIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCce
Confidence 3345566777 8999999999999999999999999999999999999887754 6999999999999999999999
Q ss_pred EEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeec-cCccce
Q 001358 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA-RPSECQ 724 (1092)
Q Consensus 646 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~-~~~~~~ 724 (1092)
|++|.+.++.++..+++|.+.|++++|+|.. +.+.||++++||.... ......
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~--------------------------sss~dgt~~~wd~r~~~~~y~pr 309 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--------------------------SSSDDGTCRIWDARLEPRIYVPR 309 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCccc--------------------------cCCCCCceEeccccccccccCCC
Confidence 9999999999999999999999999999742 5567899999996611 000000
Q ss_pred ecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCC
Q 001358 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 804 (1092)
Q Consensus 725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 804 (1092)
.. .......+..+.|...+..+++++.++.-..|.++.- .| +...
T Consensus 310 p~---~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---------------~~-----------------~~~~ 354 (1113)
T KOG0644|consen 310 PL---KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL---------------AW-----------------RSNL 354 (1113)
T ss_pred CC---CcccccceeeeeccccccccccccCCcccccchhhHh---------------hh-----------------hccc
Confidence 11 1123355677888888999999999988887765431 11 1122
Q ss_pred eeEEEEecCC-CEEEEE-eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee
Q 001358 805 VPCFALSKND-AYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 805 v~~~~~s~dg-~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1092)
+.-+.++.|- .+.+++ .+-.+++|++.+|...+.+.+|...+..+.++|.+.+...+++.||...|||+-.|.+++..
T Consensus 355 lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 355 LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee
Confidence 2222222222 333444 36779999999999999999999999999999988888889999999999999998776655
Q ss_pred ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001358 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~ 919 (1092)
..-.+.+..-+||+||..++....-|.+.|.....++
T Consensus 435 ~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 435 FIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 4334556777999999999988888999998765543
No 197
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=2e-15 Score=145.21 Aligned_cols=184 Identities=17% Similarity=0.240 Sum_probs=130.9
Q ss_pred CCeeEEEEec--CCCEEEEEeCCeEEEEEcCCceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-ee
Q 001358 803 EAVPCFALSK--NDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EV 878 (1092)
Q Consensus 803 ~~v~~~~~s~--dg~~l~~~sdg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~ 878 (1092)
...++-+|+| ||..+++.+|++++.||+.+.++...+. +|...+..+.|.|+...+|++++.||.|+|||.+.. .+
T Consensus 171 ~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p 250 (370)
T KOG1007|consen 171 HSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP 250 (370)
T ss_pred ceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc
Confidence 3445556776 8899999999999999999887766654 577889999999977789999999999999999864 57
Q ss_pred eEeeccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeC
Q 001358 879 ISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE 956 (1092)
Q Consensus 879 ~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d 956 (1092)
+..+.+|+.-|+++.|.|. .+++.|+|.|..|.+|...+-.... .+.|-.|..-.-. ...
T Consensus 251 v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~------------------qi~~~~dese~e~~dse 312 (370)
T KOG1007|consen 251 VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ------------------QIEFEDDESESEDEDSE 312 (370)
T ss_pred ccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc------------------ccccccccccCcchhhH
Confidence 8999999999999999995 4778899999999999876522111 1111111100000 000
Q ss_pred CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEeCCCcEEEEECC
Q 001358 957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 957 ~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~s~Dg~i~vwd~~ 1008 (1092)
.+++ -+..|. +. .+..|...|.+++||.-.- .+|+-+.||++.|=.+.
T Consensus 313 er~k--pL~dg~-l~-tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 313 ERVK--PLQDGQ-LE-TYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred Hhcc--cccccc-cc-cccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 1111 111121 11 2557899999999987554 56678899998876554
No 198
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=2.2e-16 Score=149.91 Aligned_cols=287 Identities=16% Similarity=0.130 Sum_probs=199.1
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEec-ccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
++.+|.+.|+++.|-.+++ |.+|...|.|++|++.+...+. .++ .|...|+.+.-.|++. +.+-+.|+.+.+
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~l 81 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLIL 81 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEEE
Confidence 3778999999999988776 8899999999999999976554 455 4677899999999865 899999999999
Q ss_pred EECCCCceeEEEecCCcceEEEeecccC---C----ccEEEEEecCCe-EEEEEcCCCCceEEec----CCCCceEEEEE
Q 001358 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKE---N----IHFIFSISVDGK-IKAWLYDSLGARVDYD----APGLGCTRMAY 537 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~---~----~~~l~s~~~dg~-i~vwd~~~~~~~~~~~----~~~~~i~~~~~ 537 (1092)
|++.-+..+. .|+-.++++.|.+.. + .+.++.-+.... +++-|......+.... ...+.+++..+
T Consensus 82 w~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 82 WTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 9988765443 244445555443211 0 011111111100 1122222111222111 12234544442
Q ss_pred e-cCCCE-EEEEecCCCCceeEEEEeCCCCeEEE----------EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001358 538 S-ANGRR-LFSCGTSKEGESFLVEWNESEGAIKR----------TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1092)
Q Consensus 538 s-~dg~~-l~~~~~~~~~~~~i~iwd~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1092)
. .++.+ ++.++ .+.+.+.+||+.++..+- ....|. ++|.++.+.+.-..=++|+.+..+..|
T Consensus 159 ~~~c~s~~lllaG---yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~---qpvlsldyas~~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 159 DHACGSTFLLLAG---YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK---QPVLSLDYASSCDRGISGGADDKLVMY 232 (323)
T ss_pred cccccceEEEEEe---ccCCeEEEEEccCCceeeccccccccccchhhcc---CcceeeeechhhcCCcCCCccccceee
Confidence 2 24444 33333 236779999999984432 233444 899999999877777888888899999
Q ss_pred ECCC--CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccc
Q 001358 606 DMNK--VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 683 (1092)
Q Consensus 606 d~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 683 (1092)
+++. +.+.......-..+.+..+..-||++.+|+++.|+.||+|+.++.+++..++-|...+.+++|+
T Consensus 233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs---------- 302 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS---------- 302 (323)
T ss_pred eeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeC----------
Confidence 8764 3332222111223568899999999999999999999999999999999999999999999997
Q ss_pred cCCceeecCCCCCCcccceeeccccccceece
Q 001358 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1092)
Q Consensus 684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~ 715 (1092)
||...++.++.|+.|.+|++
T Consensus 303 ------------pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 ------------PDCELMAAASKDARISLWKL 322 (323)
T ss_pred ------------CCCchhhhccCCceEEeeec
Confidence 66778899999999999985
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=1.1e-14 Score=145.55 Aligned_cols=241 Identities=11% Similarity=0.176 Sum_probs=183.4
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCceee
Q 001358 802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 879 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~ 879 (1092)
...+..+.|..+...|..|+....++|..+..............|..+-|+. .++|..+.+. .+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 3456677788888999999877788888876554333333444677777875 3666665543 5999999988877
Q ss_pred EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-E--eC
Q 001358 880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--HE 956 (1092)
Q Consensus 880 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~--~d 956 (1092)
..+. ...+|.++.+. .++|+++=.+. |+|||+++ .+.+.+.....+....+.++++++.+.+||. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~-----MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKD-----MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEeccc-----ceeehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7766 55678888885 45666665554 99999998 4456655544332235677777777889998 3 55
Q ss_pred CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCc-EEEEECCCCceEEeeccccccCCCCccCcccceE
Q 001358 957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035 (1092)
Q Consensus 957 ~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1035 (1092)
|.|.|||+.+.+.+.. ...|.+.+.+++|++||.+|||+|..|+ |||+.+.+|..+..|+...+ ++...+
T Consensus 153 GdV~l~d~~nl~~v~~-I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------~~~IyS 223 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNT-INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------PVSIYS 223 (391)
T ss_pred ceEEEEEcccceeeeE-EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------eeEEEE
Confidence 8899999999988887 5589999999999999999999999998 89999999999999983332 233457
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001358 1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1036 ~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
++|+| |+.+|++.+..++|++|.+....
T Consensus 224 L~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 89999 58999999999999999996543
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=3.5e-16 Score=159.43 Aligned_cols=199 Identities=17% Similarity=0.196 Sum_probs=164.6
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecc
Q 001358 806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
.+++|+.+|..++++. ||++|||+..+...+.....|..+|.++.||| |+++|++-+.| ..+||+..+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999997 89999999988888888889999999999999 99999999999 899999999977776653
Q ss_pred --ccCCeEEEEEcCCC-----CEEEEEeCCCcEEEEEcCCCceeee-eeeecCCCCcCCCCCceEEEEecCCCEEEE-Ee
Q 001358 885 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 955 (1092)
Q Consensus 885 --h~~~V~~l~~spdg-----~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~ 955 (1092)
-......+.|+.|+ ..++....-+.|+.|++........ +..+....+. .|++++.|+||+++|. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~----siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK----SISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC----cceeEEEcCCCcEEEEecc
Confidence 23346678898887 4444555667788888776443211 1112222222 5999999999999999 58
Q ss_pred CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001358 956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 956 d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~ 1010 (1092)
||.|.|++..+.+++......|...|+.+.|+||.+++++.+.|..+.|..+.-.
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 9999999999999999888899999999999999999999999999999887763
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=7.5e-15 Score=164.75 Aligned_cols=303 Identities=17% Similarity=0.205 Sum_probs=208.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC-CCCCCceEEEcc--CCCEEEEEeCCCeEEEEECCCCC
Q 001358 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNK--NGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
.+...+.|+|-...++++.+.-.|+|||.+.++.+..+..+. ....|..+.+-. |..++.+++.||.|+||+--...
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 345677889988999999988999999999999988876442 223467777654 56678888888888888643210
Q ss_pred eeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccc
Q 001358 656 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 735 (1092)
Q Consensus 656 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 735 (1092)
. +...++++
T Consensus 1145 ~----------------------------------------~~~eLVTa------------------------------- 1153 (1387)
T KOG1517|consen 1145 W----------------------------------------KKPELVTA------------------------------- 1153 (1387)
T ss_pred c----------------------------------------CCceeEEe-------------------------------
Confidence 0 00001111
Q ss_pred cEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001358 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
|++-...+.+....| .-+.|-....
T Consensus 1154 ------w~~Ls~~~~~~r~~~-------------------------------------------------~v~dWqQ~~G 1178 (1387)
T KOG1517|consen 1154 ------WSSLSDQLPGARGTG-------------------------------------------------LVVDWQQQSG 1178 (1387)
T ss_pred ------eccccccCccCCCCC-------------------------------------------------eeeehhhhCC
Confidence 110000000011111 1123333333
Q ss_pred EEEEEe-CCeEEEEEcCCceeeEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---eeeEeeccccCC--
Q 001358 816 YLFSAS-GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR-- 888 (1092)
Q Consensus 816 ~l~~~s-dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~~-- 888 (1092)
+|++++ -..|+|||.........+.. ....++++.-+...|+++++|..||.|++||.+.. ..+...+.|+..
T Consensus 1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence 444444 47899999988777776653 34567888776656799999999999999998764 356777889987
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCc
Q 001358 889 VTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 967 (1092)
Q Consensus 889 V~~l~~spdg~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~ 967 (1092)
|..+.+-+.|- .|++|+.||.|++||+..........+ ..+...++..+++..+++...+|+|+.+.|+||++..
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i---v~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G- 1334 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI---VAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG- 1334 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCccccccee---eeccccCccceeeeeccCCCeeeecCcceEEEEecCh-
Confidence 99999988764 499999999999999987432221111 1222222358999999999999998779999999863
Q ss_pred eeeeee------ccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001358 968 TCLKQW------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 968 ~~~~~~------~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~ 1011 (1092)
+.+..+ .....+.+.|++|.|---+||+|+.|.+|.||....+.
T Consensus 1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 333221 11236778999999999999999999999999887654
No 202
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=2.6e-14 Score=137.89 Aligned_cols=242 Identities=13% Similarity=0.141 Sum_probs=174.5
Q ss_pred CCCCCeeEEEEecCCC----EEEEEeCCeEEEEEcCCce--e--eEEe-----cCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001358 800 NSQEAVPCFALSKNDA----YLFSASGGVISLYIVMTFK--T--ILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDS 866 (1092)
Q Consensus 800 ~~~~~v~~~~~s~dg~----~l~~~sdg~i~iwd~~~~~--~--~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg 866 (1092)
.|..+++.+.|.|+.+ -++..++..+|+|.+...+ . ...+ ..+..++++..|..-+.+++.+.+-|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 4899999999999874 2333456789999987422 1 1111 235568999999987889999999999
Q ss_pred eEEEEEcCCce---eeEeeccccCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEE
Q 001358 867 TILIYNARSSE---VISKLEGHSKRVTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 942 (1092)
Q Consensus 867 ~v~iwd~~~~~---~~~~l~~h~~~V~~l~~spdg-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l 942 (1092)
+..|||++++. +..++-+|..+|..++|+.++ +.+||+|.||.||++|+..-+-. ..+...... ..+...+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--TIIYE~p~~---~~pLlRL 248 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--TIIYEDPSP---STPLLRL 248 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--eEEecCCCC---CCcceee
Confidence 99999999863 467888999999999999865 67999999999999999874422 233322221 1357888
Q ss_pred EEecCC-CEEEE-EeC-CcEEEEEcCCceeeeeeccCCCcCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEeecc
Q 001358 943 QFHKDQ-TRFLL-VHE-THLAIYEAEELTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 943 ~~s~dg-~~la~-~~d-~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
+|++.. +++|+ +.| ..|.|.|++.....-.-+.+|.+.|..++|.|. +..|.|++.|..+.+||+..--......+
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 998754 66777 444 579999998665444447789999999999995 46899999999999999987533111111
Q ss_pred ccccCCCCccCcccceEEEECCCCCCEEEEEeC
Q 001358 1019 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1051 (1092)
Q Consensus 1019 ~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~ 1051 (1092)
..... .++.|. .+.|+|..++.++.+..
T Consensus 329 ilay~---a~~EVN--qi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 329 ILAYT---AGGEVN--QIQWSSSQPDWIAICFG 356 (364)
T ss_pred hhhhh---ccceee--eeeecccCCCEEEEEec
Confidence 11111 234566 45666655677776653
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=8.3e-15 Score=166.61 Aligned_cols=235 Identities=12% Similarity=0.112 Sum_probs=162.6
Q ss_pred cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCCcc
Q 001358 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDAR 432 (1092)
Q Consensus 356 d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~ 432 (1092)
+..|.|||........ +..|...+.+.+|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~~--------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQFI--------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCceE--------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 4689999987654321 56688899999999999999988643 479999998875322
Q ss_pred ceEEecccccceeEEEeeCCCCcEEEEE-EeCCCcEEEE--ECCCCceeEEEecCCcceEEEeecccCCccEEEEEe-cC
Q 001358 433 QQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VD 508 (1092)
Q Consensus 433 ~~~~l~~h~~~v~~~~~s~d~~~l~l~s-~~~d~~i~vw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~d 508 (1092)
...+.+| ...++|+|||+ .|+. .+.+|.+.|| |+.+++ +..+..+...+....|+ +||+.|+..+ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWS--PDGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEEC--CCCCEEEEEECCC
Confidence 2223333 44789999999 4554 4567766555 666665 45566677777778885 4667666544 67
Q ss_pred CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358 509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 509 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
|...+|+++..........+.. ....|+|||++++..+. ..+.+||+.+++........ ....+.|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sP 381 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF-----LDESPSISP 381 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC-----CCCCceECC
Confidence 8889998765433222222222 45789999999988764 23777999988765433222 234578999
Q ss_pred CCCEEEEEeCCCeEEEEEC--CCCceEEEEeCCCCCCCCceEEEccC
Q 001358 589 AKDQILAAGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
++++++.++.++...+|.+ .+|.....+..+. ..+...+|+|-
T Consensus 382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~ 426 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY 426 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence 9999999999998888875 3577777776543 34778889874
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=5.1e-14 Score=160.99 Aligned_cols=256 Identities=13% Similarity=0.109 Sum_probs=182.0
Q ss_pred ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCC----CCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCc
Q 001358 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~----~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~ 466 (1092)
+..|...|..++.+++ +.++++||.||+|++||...- ...+...++..-..++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 6678999999998875 499999999999999998632 22233333433466899999999999 6888899999
Q ss_pred EEEEECCC--Cce-----eEEEec-CCcceEEEe-ecccCCccEEEEEecCCeEEEEEcCCCCceEEe--cCCCCceEEE
Q 001358 467 IKVWDAVT--GSR-----TYSFEG-HGAPVYSLC-PHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRM 535 (1092)
Q Consensus 467 i~vwd~~~--~~~-----~~~~~~-~~~~v~~i~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~ 535 (1092)
|++.+++. .+. .+.... ..+.+.+|. +........++.+..-+.|..||.+........ ....+-|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 99999876 221 111111 223444443 332222237888999999999999887665543 4455689999
Q ss_pred EEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC---CCEEEEEe--CCCeEEEEECCCC
Q 001358 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAG--DDHVIKIWDMNKV 610 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s--~dg~i~iwd~~~~ 610 (1092)
+.+|-+.+++.|.. .|.+.+||++=+..+....... ..++..+..+|- +...++++ ..+.|.+|++.+|
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 99999999999976 6679999999988887776544 366777766654 34555543 5788999999999
Q ss_pred ceEEEEeCCCCC-----------------CCCceEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 001358 611 QLLTTIDAGGGL-----------------PENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 611 ~~~~~~~~~~~~-----------------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
....++...... ......++...+..+.+|+.|..|+.||.....
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 877776543110 011223444456788999999999999988653
No 205
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=2.6e-13 Score=148.43 Aligned_cols=318 Identities=11% Similarity=0.134 Sum_probs=201.5
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001358 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
++.|.+.|..+.+.+..+.... ..-..+.|+||++++++++.||.|.++|+.+++.+.++..... ...+++++|
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---~~~i~~s~D 88 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---PRGIAVSPD 88 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---EEEEEE--T
T ss_pred CCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---cceEEEcCC
Confidence 6679999999999999998644 3345578999999999999999999999999999999976533 578999999
Q ss_pred CCEEEEEe-CCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccce
Q 001358 634 GTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 634 ~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~ 712 (1092)
|++++++. ..+.+.++|..+.+.+..+.......
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~--------------------------------------------- 123 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV--------------------------------------------- 123 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T---------------------------------------------
T ss_pred CCEEEEEecCCCceeEeccccccceeecccccccc---------------------------------------------
Confidence 99998775 58999999999887776554211100
Q ss_pred eceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC-CeeEEeeecCCccccCcccccccCCccccCCCCCce
Q 001358 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 791 (1092)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1092)
.....++.++..++....++..-.+ +.+.+-|+.... .+
T Consensus 124 ------------------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~----------------------~~ 163 (369)
T PF02239_consen 124 ------------------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK----------------------NL 163 (369)
T ss_dssp ------------------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS----------------------CE
T ss_pred ------------------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc----------------------cc
Confidence 0023456777778888766655554 666555543211 01
Q ss_pred eeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEec----CCCCCeEEEEEcCC---------CC
Q 001358 792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPH---------DN 856 (1092)
Q Consensus 792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~---------d~ 856 (1092)
....+ ..........|+|++++++++. .+.|.++|.++++.+..+. .|..+...+ .+|. .+
T Consensus 164 ~~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 164 KVTTI---KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLG 239 (369)
T ss_dssp EEEEE---E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSS
T ss_pred ceeee---cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeecccc
Confidence 11111 1234556789999999988875 5789999999998876653 233333332 1221 22
Q ss_pred CEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE----eCCCcEEEEEcCCCceeeeeeeecCCCC
Q 001358 857 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS----GGDAQIFVWDVDGWGIQTCRSLQTPDGV 932 (1092)
Q Consensus 857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 932 (1092)
...++.-....+.+||..+.+.+.++....++ .-+.-+||++++... ...++|.++|.++.+... .+....+
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~--~i~~~~~- 315 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK--TITPGPG- 315 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE---HHHHHT-
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE--EEeccCC-
Confidence 23322233345667898999999999977666 778889999999987 455889999999853211 1111111
Q ss_pred cCCCCCceEEEEecCCCEEEEE---eCCcEEEEEcCCceeeeeec
Q 001358 933 MTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWF 974 (1092)
Q Consensus 933 ~~~~~~v~~l~~s~dg~~la~~---~d~~v~lwd~~~~~~~~~~~ 974 (1092)
..+..+.|++||+.+-++ .++.|.+||..+.+.+..+.
T Consensus 316 ----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 316 ----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp ------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ----CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 137899999999987763 34489999999999888743
No 206
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=1.1e-12 Score=143.66 Aligned_cols=332 Identities=15% Similarity=0.164 Sum_probs=207.8
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE
Q 001358 455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 534 (1092)
Q Consensus 455 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 534 (1092)
.+++++-..++.|.|.|..+.+.+.++......-..+.+ ++|++++++++.||.|.++|+.+.+....+.... ...+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 346677788999999999999999999865544344555 6688899999999999999999999877776544 5678
Q ss_pred EEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc----cCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q 001358 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNK 609 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~ 609 (1092)
+++|+||++++++... .+.+.++|..+.+.++.+..... ....+.++..+|....++..- +.+.|.+-|...
T Consensus 83 i~~s~DG~~~~v~n~~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYE---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEEE---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEecC---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 9999999999987642 56799999999999988765431 124577888888888565554 558888889877
Q ss_pred CceEE--EEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCC
Q 001358 610 VQLLT--TIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1092)
Q Consensus 610 ~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 686 (1092)
.+.+. .+... .......|+|++++++++ ..+..|.++|..+++....+....
T Consensus 160 ~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~---------------------- 214 (369)
T PF02239_consen 160 PKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK---------------------- 214 (369)
T ss_dssp SSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS----------------------
T ss_pred ccccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceEEEEeeccc----------------------
Confidence 65443 33322 235689999999988775 446788899988764443222100
Q ss_pred ceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCC
Q 001358 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 766 (1092)
Q Consensus 687 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~ 766 (1092)
..|......+ ..|..- .+|.
T Consensus 215 --------------------------------------------~p~~~~~~~~-php~~g-----------~vw~---- 234 (369)
T PF02239_consen 215 --------------------------------------------KPHPGPGANF-PHPGFG-----------PVWA---- 234 (369)
T ss_dssp --------------------------------------------SBEETTEEEE-EETTTE-----------EEEE----
T ss_pred --------------------------------------------cccccccccc-cCCCcc-----------eEEe----
Confidence 0011112111 111110 0111
Q ss_pred ccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE-EEeCCeEEEEEcCCceeeEEecCCCCC
Q 001358 767 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SASGGVISLYIVMTFKTILTIMPPSPT 845 (1092)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~-~~sdg~i~iwd~~~~~~~~~~~~~~~~ 845 (1092)
.+..+...+ ..+.+.+.+||..+++.++++......
T Consensus 235 -------------------------------------------~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g 271 (369)
T PF02239_consen 235 -------------------------------------------TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG 271 (369)
T ss_dssp -------------------------------------------EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred -------------------------------------------eccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence 111122221 122345567888889999988876666
Q ss_pred eEEEEEcCCCCCEEEEE----eCCCeEEEEEcCCceeeEeecccc-CCeEEEEEcCCCCEEEEEeCC--CcEEEEEcCCC
Q 001358 846 ATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVSSGGD--AQIFVWDVDGW 918 (1092)
Q Consensus 846 i~~l~~s~~d~~~lasg----~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~s~s~D--g~i~iwd~~~~ 918 (1092)
.-+..+| +++++.+. ...++|.++|.++.+.+..+.... ..+..+.|++||+.+..+..+ +.|.|||..+.
T Consensus 272 -lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 272 -LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp ---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred -ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 7788899 88899887 455799999999998888876332 358999999999977655443 36999999997
Q ss_pred ceee
Q 001358 919 GIQT 922 (1092)
Q Consensus 919 ~~~~ 922 (1092)
+...
T Consensus 350 ~~~~ 353 (369)
T PF02239_consen 350 KEKK 353 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6544
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.2e-15 Score=152.50 Aligned_cols=197 Identities=21% Similarity=0.202 Sum_probs=151.0
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001358 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 926 (1092)
Q Consensus 847 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 926 (1092)
.+++|+. ++..|++|+.||++|||+..+...+.....|.+.|.++.|||||+.|++.+.| ..+||++.++-... .
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a---~ 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA---R 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh---h
Confidence 7899999 89999999999999999999888888888899999999999999999999999 79999999973221 1
Q ss_pred ecCCCCcCCCCCceEEEEecCC---CE-EEEE--eCCcEEEEEcCCcee-----eeeeccCCCcCEEEEEEecCCCEEEE
Q 001358 927 QTPDGVMTLAPSETHIQFHKDQ---TR-FLLV--HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT 995 (1092)
Q Consensus 927 ~~~~~~~~~~~~v~~l~~s~dg---~~-la~~--~d~~v~lwd~~~~~~-----~~~~~~~h~~~v~~l~fs~dg~~l~t 995 (1092)
.++.+.. -....+.|+.|+ .+ +++. .-+.|..|++..... .++ .......|++++.|+||++++.
T Consensus 223 ~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~-~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 223 KTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK-KIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred cCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh-hhhccCcceeEEEcCCCcEEEE
Confidence 1111111 247789999988 33 3332 345677766643222 111 1112458999999999999999
Q ss_pred EeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001358 996 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 996 ~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
|+.||.|.|++..+.+...-+. ..|..-| ..+.|+| |.+.+++.+.|.+..+..+.-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk-------~aH~~~V--T~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK-------EAHLGFV--TGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh-------hhheeee--eeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999999887763332 2345544 4789999 578999999999999998865
No 208
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.64 E-value=4e-14 Score=158.30 Aligned_cols=250 Identities=17% Similarity=0.168 Sum_probs=181.8
Q ss_pred CCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCCc--cc-eEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358 395 PGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA--RQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 395 h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~--~~-~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
-...|.|++|+| +..++|.|..+|.|.+||+..+... .. ......|..+++.+.|..+-...-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 467999999999 6778888899999999999977651 11 1123468899999999775442249999999999999
Q ss_pred ECCCCce------eEEEe------cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--------eEEecCCCC
Q 001358 471 DAVTGSR------TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGL 530 (1092)
Q Consensus 471 d~~~~~~------~~~~~------~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~~~~ 530 (1092)
+++.-.. ..... .-...++++.|.+. +-..++.|+.+|.|.--.....+. ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 12345778888765 446799999999988733322221 225566788
Q ss_pred ceEEEEEecCCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCeEEEEECC
Q 001358 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMN 608 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~ 608 (1092)
+|+++.++|-+..++..+. +-++++|... ....+..+..+. ..+.+++|+|....+ +++..||.+.+||+.
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 9999999998876665543 6679999987 555555665555 669999999987554 557789999999997
Q ss_pred CCce--EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358 609 KVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 609 ~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.... +...... ....+.+.|+++|+.+++|...|.+.+|++...
T Consensus 473 ~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 473 QDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 5443 3333322 345678888999999999999999999999743
No 209
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.2e-14 Score=158.85 Aligned_cols=297 Identities=14% Similarity=0.183 Sum_probs=207.7
Q ss_pred cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC--CCC
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGS 409 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~ 409 (1092)
+....-..+.|+|-.. .++++...-.|+|||.+.++.+..+.- -......|+.+.+-. |..
T Consensus 1062 ~n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n----------------~~~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDN----------------GAFPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred cCCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccC----------------CCCCCCccceeeeecccchh
Confidence 4444567888999887 577777667899999999988754221 112345788888876 677
Q ss_pred EEEEEeCCCEEEEEEcc-CC-CCccc---eEEeccc----ccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358 410 LLGVAYSKHIVQLYAYH-GG-SDARQ---QLEIDAH----VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~-~~-~~~~~---~~~l~~h----~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
++++|+.||.|+||+-- .+ +..+. ...+.++ .+.=.-+.|-.... .|+++|.-..|+|||.....+++.
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEee
Confidence 99999999999999743 22 11111 1112221 11113356776666 566666688999999999888877
Q ss_pred Eec-CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCc--eEEEEEecCCCE-EEEEecCCCC
Q 001358 481 FEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLG--CTRMAYSANGRR-LFSCGTSKEG 553 (1092)
Q Consensus 481 ~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~--i~~~~~s~dg~~-l~~~~~~~~~ 553 (1092)
+.. ....|+++.-... .|..+++|..||.|++||.+.... +..+..|... |..+.+-+.|-. |++++.
T Consensus 1203 iP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~---- 1277 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ---- 1277 (1387)
T ss_pred cccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----
Confidence 643 4456777765433 368999999999999999876443 4455666665 999999987765 888876
Q ss_pred ceeEEEEeCCCCeEEEEEe--eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----CCCCCCc
Q 001358 554 ESFLVEWNESEGAIKRTYQ--GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENP 626 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~ 626 (1092)
+|.|++||++.......+. .|..-.+..+++..++....+++|+. +.|.||++.. +.+..+..+ .....+.
T Consensus 1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~s 1355 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVS 1355 (1387)
T ss_pred CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcc
Confidence 5559999998753222221 11111134899999999999999998 9999999864 333333221 1234578
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358 627 RICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
+++|+|..-++|+|+.|..|.||.....
T Consensus 1356 cL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1356 CLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eeeecchhHhhhhccCCceEEEeecCCc
Confidence 9999999999999999999999987654
No 210
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.5e-15 Score=155.06 Aligned_cols=312 Identities=16% Similarity=0.236 Sum_probs=222.9
Q ss_pred EecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcceEEEeecccCCccEEEEEecCCeEEEE
Q 001358 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514 (1092)
Q Consensus 436 ~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vw 514 (1092)
.|..|.+.|..+.|+..|. .+++|+.|..|.+||+.+++....+ .||...|....|.|..+...+++++.||.+++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 5789999999999999999 8999999999999999999887776 578888888889998888999999999999988
Q ss_pred EcCCCCce---EEecCCCCceEEEEEecCCCE-EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC---ceEEEEEc
Q 001358 515 LYDSLGAR---VDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFD 587 (1092)
Q Consensus 515 d~~~~~~~---~~~~~~~~~i~~~~~s~dg~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~ 587 (1092)
.+...+.. ..+..|.++|..++.-|+..+ +.+++. ++.+.-+|++.+.....+........ ....++..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~ge----D~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE----DAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCccccccc----ccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 76554432 355668889999999998765 556654 67788899988876655554332233 56788888
Q ss_pred CCCC-EEEEEeCCCeEEEEECCCCceE------EEEeCC----CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCe
Q 001358 588 TAKD-QILAAGDDHVIKIWDMNKVQLL------TTIDAG----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1092)
Q Consensus 588 ~~~~-~l~~~s~dg~i~iwd~~~~~~~------~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 656 (1092)
|... .+++++.|..+++||.+.-... ..+..+ .....|++++|+.++.-+.+...|-.|+++.-.-+.
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~- 369 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD- 369 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc-
Confidence 8775 7788999999999997642211 111110 222357777777666666666666667776322110
Q ss_pred eeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCcccccc
Q 001358 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 736 (1092)
Q Consensus 657 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 736 (1092)
|....+.
T Consensus 370 -----------------------------------------G~~p~~~-------------------------------- 376 (559)
T KOG1334|consen 370 -----------------------------------------GSEPDPS-------------------------------- 376 (559)
T ss_pred -----------------------------------------CCCCCCC--------------------------------
Confidence 0000000
Q ss_pred EEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE-EecCCC
Q 001358 737 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA-LSKNDA 815 (1092)
Q Consensus 737 i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~s~dg~ 815 (1092)
+|... .....+.++.....|..+- |-|...
T Consensus 377 ------s~~~~-------------------------------------------~~k~vYKGHrN~~TVKgVNFfGPrsE 407 (559)
T KOG1334|consen 377 ------SPREQ-------------------------------------------YVKRVYKGHRNSRTVKGVNFFGPRSE 407 (559)
T ss_pred ------cchhh-------------------------------------------ccchhhcccccccccceeeeccCccc
Confidence 00000 0000011111122344444 457889
Q ss_pred EEEEEeC-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001358 816 YLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1092)
Q Consensus 816 ~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1092)
|+++|+| |.|.||+-.+++.++-+.+...-|.|+.-+| --.+||+.+-|..|+||...+.+
T Consensus 408 yVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 408 YVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred eEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence 9999999 9999999999999999888777899999999 67799999999999999875443
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.3e-14 Score=162.97 Aligned_cols=232 Identities=18% Similarity=0.195 Sum_probs=152.5
Q ss_pred ccCCCcceeEecccCCCCceEEeecCCCceEEEEEcCc---CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCC
Q 001358 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1092)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d---~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h 395 (1092)
+.+......+.+..|...+..++|||||++ ||..+.+ ..|.+||+.+++...... +.+|
T Consensus 188 i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~ 249 (429)
T PRK01742 188 VADYDGFNQFIVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH 249 (429)
T ss_pred EECCCCCCceEeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc
Confidence 344444456778888889999999999996 5554432 469999999886432111 2233
Q ss_pred CCcEEEEEECCCCCEEEEEe-CCCEEEEE--EccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEEC
Q 001358 396 GVSVNRVVWSPDGSLLGVAY-SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~-~d~~i~iw--d~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 472 (1092)
..+++|||||++|++++ .+|.+.|| |+.++.. . .+..+...+...+|+|||+. +++++..++...||++
T Consensus 250 ---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 250 ---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRM 321 (429)
T ss_pred ---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEE
Confidence 34689999999998875 57765555 6666542 2 45567777889999999995 3334456788888876
Q ss_pred CCC-ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358 473 VTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 473 ~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
... .....+ .+.. ....| ++||+.|+..+.++ +.+||+.++........ .....+.|+|||++++.++.++
T Consensus 322 ~~~~~~~~~l-~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g 393 (429)
T PRK01742 322 SASGGGASLV-GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQG 393 (429)
T ss_pred ECCCCCeEEe-cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCC
Confidence 532 222333 3433 33455 56778888887765 45589887765433222 2335678999999999987632
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001358 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
. ...+++++ .+|..++.+..+. +.+...+|+|-
T Consensus 394 ~-~~~l~~~~-~~G~~~~~l~~~~---g~~~~p~wsp~ 426 (429)
T PRK01742 394 L-GKVLQLVS-ADGRFKARLPGSD---GQVKFPAWSPY 426 (429)
T ss_pred C-ceEEEEEE-CCCCceEEccCCC---CCCCCcccCCC
Confidence 2 22233444 3577777887766 67788889874
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=4.9e-13 Score=133.16 Aligned_cols=288 Identities=16% Similarity=0.167 Sum_probs=190.7
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-CCCEEEEE
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVA 414 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~ 414 (1092)
.+..++|++.-. -+|++..|-.|+|||-.....-.- -......|+|++|-| .++-|++|
T Consensus 100 dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~L-------------------ks~sQrnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTKL-------------------KSVSQRNVTCLAWRPLSASELAVG 159 (445)
T ss_pred ceeeEeechhhh-hhhhhccCcEEEEeccCCCCCcee-------------------cchhhcceeEEEeccCCcceeeee
Confidence 677888988544 478888999999999776322110 122456899999999 46788888
Q ss_pred eCCCEEEEEEccCCCCc-----------cceEEecccccceeEEEeeCCCCcEEEEEEeC-CCcEEEEECCCCceeEEEe
Q 001358 415 YSKHIVQLYAYHGGSDA-----------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~-----------~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~~ 482 (1092)
+..| |.||....-... .+...-.+| .+|+++.|.+||. .+++++. |..|.|||.++|..+....
T Consensus 160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence 8887 999987532111 112223455 5899999999999 6787774 5689999999998776554
Q ss_pred cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEe-
Q 001358 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN- 561 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd- 561 (1092)
...+.+.-+.|+ +|+.+|+++.-|+..++|+....-.........+.|...+|+|+|++|+..... ...++-..
T Consensus 236 ~glgg~slLkwS--Pdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f 310 (445)
T KOG2139|consen 236 KGLGGFSLLKWS--PDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTF 310 (445)
T ss_pred cCCCceeeEEEc--CCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEee
Confidence 455677788885 577899999999999999654433333334444589999999999987765531 22232211
Q ss_pred -CCCCeE-----------E------EEEeeccccCCceEEEEEcCCCCEEEEEeCCC--------eEEEEECCCCceEEE
Q 001358 562 -ESEGAI-----------K------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------VIKIWDMNKVQLLTT 615 (1092)
Q Consensus 562 -~~~~~~-----------~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--------~i~iwd~~~~~~~~~ 615 (1092)
-+.+.. + ....+...-.+.+.+++|.|.|.++++.-..+ .|.+||...--.+..
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 111110 0 11112112246789999999999999865433 366788765444433
Q ss_pred EeC-CCCCCCCceEEEcc---CCCEEEEEeCCCeEEEEECC
Q 001358 616 IDA-GGGLPENPRICFNK---NGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 616 ~~~-~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~~ 652 (1092)
... .........++|+| ++.+|.++-..|.+.-|.+.
T Consensus 391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 311 11112245677776 67888888888888777654
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.61 E-value=6.7e-14 Score=146.27 Aligned_cols=169 Identities=11% Similarity=0.150 Sum_probs=126.2
Q ss_pred ecCCCEEEEEe-CCeEEEEEcCCceeeEEec----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------
Q 001358 811 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---------- 875 (1092)
Q Consensus 811 s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---------- 875 (1092)
.+.+--+.++- -|.+.+.|....+..+.+. -....++|+.|-|.+...++++-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45565666665 4888888865522211111 12368999999997777888889999999997531
Q ss_pred ----c--------------eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCC
Q 001358 876 ----S--------------EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 937 (1092)
Q Consensus 876 ----~--------------~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 937 (1092)
+ .++..+.--.+.|...+|||||++||+.|.||.+||+|+.+.+ ++....... +
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYF---G 333 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYF---G 333 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhc---c
Confidence 1 1122222234578889999999999999999999999999843 333333333 3
Q ss_pred CceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEec
Q 001358 938 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC 988 (1092)
Q Consensus 938 ~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~ 988 (1092)
...+++|||||++|++ |.|.-|.||.....+.+.. -.+|...|+.++|.|
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc
Confidence 7899999999999999 6888999999999988876 678999999999987
No 214
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.61 E-value=1.5e-11 Score=139.66 Aligned_cols=199 Identities=16% Similarity=0.161 Sum_probs=156.8
Q ss_pred ceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce--EEEeecccCCccEEEEEecCCeEEEEEcCCCC
Q 001358 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 520 (1092)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 520 (1092)
.|....+.-+.+ .++.+..++.+.+||...+..+..+....... .++.+-.+.+.-++++|+.-+.|.+|++....
T Consensus 89 wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 89 WIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 344455666666 57777778899999998887776665332221 12222234555789999999999999998555
Q ss_pred ceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE-EEeeccccCCceEEEEEcCCCCEEEEEeCC
Q 001358 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1092)
Q Consensus 521 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 599 (1092)
....+.+|.+.|..+.++.||+++++++. |..+++|++.+++... ..-+|. ..+..++|.|+ .++++++|
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~~fgHs---aRvw~~~~~~n--~i~t~ged 237 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCTGFGHS---ARVWACCFLPN--RIITVGED 237 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCccccccc---ceeEEEEeccc--eeEEeccc
Confidence 55578999999999999999999999987 6679999999998877 556666 89999999998 89999999
Q ss_pred CeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358 600 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
-+.++|+.+ +..+..+..|.. ..+..++..++...+++++.|+.+++|++...
T Consensus 238 ctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 238 CTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 999999765 444456666544 46899999999999999999999999998754
No 215
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.61 E-value=1.4e-10 Score=119.86 Aligned_cols=104 Identities=11% Similarity=0.070 Sum_probs=82.2
Q ss_pred CCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC----eEEEEEcCC
Q 001358 801 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARS 875 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~ 875 (1092)
.-+.|.++..++||++++++.+ ..+.+.|+.++.....-+...+-|+.++|+| +++++|.+--+| .|+++|+.+
T Consensus 400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCC
Confidence 3456778889999998888876 7799999999887666666778899999999 999999988777 789999999
Q ss_pred ceeeEeeccccCCeEEEEEcCCCCEEEEEeC
Q 001358 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGG 906 (1092)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~ 906 (1092)
++....-. ..+.=.+-+|.||+++|..-+.
T Consensus 479 ~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 479 GKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred CeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 88655443 2333346789999999876553
No 216
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.61 E-value=1.6e-09 Score=131.72 Aligned_cols=510 Identities=12% Similarity=0.131 Sum_probs=288.1
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEE----EccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iw----d~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
...+.|.++.|-+|...|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+....++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 355789999999999999999999999999 444422 11 2334566899999999999 5666666788877
Q ss_pred EECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEc----------CCCCc----eEEecCCCCceEEE
Q 001358 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY----------DSLGA----RVDYDAPGLGCTRM 535 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~----------~~~~~----~~~~~~~~~~i~~~ 535 (1092)
-+ .+-..+....-+..... ....++.+..+.=.-+.= +.... ...+. ....-..+
T Consensus 147 mt-~~fd~i~E~~l~~~~~~---------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~I 215 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFG---------ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRI 215 (928)
T ss_pred Ee-ccceEEEEeecCccccC---------CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEE
Confidence 65 55555554433321110 011222221111000000 00000 01111 22345678
Q ss_pred EEecCCCEEEEEecCCC-C-ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCC
Q 001358 536 AYSANGRRLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKV 610 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~ 610 (1092)
+|-.||.++++.+.+.. + ...+++|+.+ |.+..+..... +--.+++|-|.|+.+++... ...|.+|.. +|
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NG 290 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NG 290 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CC
Confidence 99999999998876332 2 5889999965 76655554333 45567899999999988653 455777764 44
Q ss_pred ceEEEEeCC--CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCce
Q 001358 611 QLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1092)
Q Consensus 611 ~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 688 (1092)
-....+... .....|..+.|++|+..||+...|. |.+|...+-...-...- .+.
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei--------~~~--------------- 346 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEI--------RFS--------------- 346 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEE--------Ecc---------------
Confidence 444444433 2334689999999999999988765 99998876543322110 000
Q ss_pred eecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCC-cEEEEeecCCeeEEeeecCCc
Q 001358 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRND 767 (1092)
Q Consensus 689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~lw~~~~~~ 767 (1092)
....+..+.|+|.. ..|...+.+|.+..+++..
T Consensus 347 --------------------------------------------~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~-- 380 (928)
T PF04762_consen 347 --------------------------------------------SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW-- 380 (928)
T ss_pred --------------------------------------------CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE--
Confidence 01112225555532 3355555556666555421
Q ss_pred cccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec-CCCEEEEEeCCeEEEEEcCCceee-----EEecC
Q 001358 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTI-----LTIMP 841 (1092)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~-dg~~l~~~sdg~i~iwd~~~~~~~-----~~~~~ 841 (1092)
++..+. ..+| |...+++..+.++.+-.+...-.. ..+.
T Consensus 381 ----------------~v~~s~-------------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~- 424 (928)
T PF04762_consen 381 ----------------DVSRSP-------------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE- 424 (928)
T ss_pred ----------------EEEecC-------------------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-
Confidence 111110 0111 222344444556777666543221 2222
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee--------eEeec----------cccCCeEEEEEcCCCCEEEE
Q 001358 842 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------ISKLE----------GHSKRVTGLVFSDALNILVS 903 (1092)
Q Consensus 842 ~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--------~~~l~----------~h~~~V~~l~~spdg~~l~s 903 (1092)
....|.+++|++ ++..+|+-..||.+.+|....... ...+. .-...+..++|..+...++.
T Consensus 425 ~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (928)
T PF04762_consen 425 LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVL 503 (928)
T ss_pred CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEE
Confidence 346899999999 777799999999999998544321 11111 12345788899888877776
Q ss_pred EeCC---CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCc
Q 001358 904 SGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSV 979 (1092)
Q Consensus 904 ~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~ 979 (1092)
...+ ..+.++++...+... ......... +.+..+...++...++. ..+|.+..++..........++. .-
T Consensus 504 ~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~-~c 577 (928)
T PF04762_consen 504 SDSDSNQSKIVLVDIDDSENSA--SVESSTEVD---GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ-PC 577 (928)
T ss_pred EecCcccceEEEEEeccCCCce--eEEEEeccC---ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC-CC
Confidence 6654 578888885432111 111111111 13455555566553444 67888887766543322211211 22
Q ss_pred CEEEEEEecCCC---EEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEE
Q 001358 980 PISQATFSCDCR---MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1056 (1092)
Q Consensus 980 ~v~~l~fs~dg~---~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~ 1056 (1092)
.-..++...+.. .++.-+..|.+++ ++..++ ..+. +++.+ +.+|+.......++
T Consensus 578 ~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la--------------~~~t--SF~v~---~~~Ll~TT~~h~l~ 634 (928)
T PF04762_consen 578 PWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA--------------SNCT--SFAVT---DSFLLFTTTQHTLK 634 (928)
T ss_pred cEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe--------------cCCc--eEEEE---cCEEEEEecCceEE
Confidence 223333333333 3443344454443 444442 1233 44555 36788888888999
Q ss_pred EEecC
Q 001358 1057 VIEPN 1061 (1092)
Q Consensus 1057 ~w~~~ 1061 (1092)
+.++.
T Consensus 635 fv~L~ 639 (928)
T PF04762_consen 635 FVHLN 639 (928)
T ss_pred EEECc
Confidence 99997
No 217
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.60 E-value=1.7e-11 Score=139.39 Aligned_cols=200 Identities=15% Similarity=0.151 Sum_probs=151.7
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
.|....+.-+.+ .++.+..++.+.|||...+....... .+.+.. -....-+.++++.-++++|+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~-------~~er~~--------l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQ-------SDERCT--------LYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehhcC-------CCceEE--------EEeEEEEeccCcEEEEEecc
Confidence 444455555665 57888888999999998877664211 000000 01223355778888999999
Q ss_pred CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE-EEecCCcceEEEeec
Q 001358 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPH 494 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~i~~~ 494 (1092)
.-+.|.+|+..... . ...+.+|.+.|.++.|+.||+ ++++.|.|.++++|++++++.+. ..-+|+..|..++|.
T Consensus 153 v~~~iivW~~~~dn-~--p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDN-K--PIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred ccccEEEEeccccC-C--cceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence 99999999998332 1 114789999999999999999 89999999999999999998876 667899999999996
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
+. .+++++.|-+.++|+.+..... .+..|. ..+..++..++...+++++. |+.+++|+....
T Consensus 228 ~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 228 PN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR 290 (967)
T ss_pred cc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence 54 8999999999999976544333 555554 47899999988888888876 666999987643
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=2.9e-12 Score=125.94 Aligned_cols=241 Identities=13% Similarity=0.173 Sum_probs=169.7
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC-----CCcEEEEEC
Q 001358 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDA 472 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-----d~~i~vwd~ 472 (1092)
...+++|+.|..-+++|..+| .+||+.+--+... .-..+.+.+.-+...--.+.+.||-|+. -..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 445599999999999998888 9999987522211 1111222222222222334434444443 247999997
Q ss_pred CCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCC--CceEEEEEecCCCEEEEEec
Q 001358 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPG--LGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~--~~i~~~~~s~dg~~l~~~~~ 549 (1092)
...+++.++. ...+|.++.+... .|++ -..+.|.||.+. ..+....+.... ....+++-+.+...|+.-+
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~----riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg- 155 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD----RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG- 155 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC----eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC-
Confidence 7788888886 7788999998542 3444 356789999887 444444444332 2333333333333444433
Q ss_pred CCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceEEEEeCCCCCCCCc
Q 001358 550 SKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENP 626 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1092)
...|.|++-|+...+. ...+..|. ..|.+++++-+|..++++|..|+ |||||..+|..+..+........+.
T Consensus 156 --~k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 156 --FKTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred --CccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 2357799999876555 46677777 99999999999999999999987 7999999999999998766667799
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358 627 RICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
+++|||+..+||++++.|++.|+.+...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998864
No 219
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=1.2e-13 Score=158.13 Aligned_cols=362 Identities=12% Similarity=0.078 Sum_probs=223.7
Q ss_pred CCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCc---cceecccCC
Q 001358 654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS---ECQSLLLPS 730 (1092)
Q Consensus 654 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~---~~~~~~~~~ 730 (1092)
|..+..+..|...+..++.+ ++++.++++|+.||+|++|+...-... ....+.+
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s---------------------~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-- 1094 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVS---------------------SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-- 1094 (1431)
T ss_pred ceEeehhhhccccccceeec---------------------CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE--
Confidence 34555666677777666666 577899999999999999996532222 1111111
Q ss_pred ccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001358 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 731 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
....+++.++...+.+..++.++.||.+++.++..... ... .+.+.....+. ....-+..-+|
T Consensus 1095 s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~----~~~-----------~~~~~ri~n~~--~~g~vv~m~a~ 1157 (1431)
T KOG1240|consen 1095 SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV----SKR-----------VATQVRIPNLK--KDGVVVSMHAF 1157 (1431)
T ss_pred eccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc----ccc-----------eeeeeeccccc--CCCceEEeecc
Confidence 12467889999999999999999999999998765311 000 00111111111 11222333333
Q ss_pred ecC-CC-EEEEEeC-CeEEEEEcCCceeeEEec--CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec-c
Q 001358 811 SKN-DA-YLFSASG-GVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-G 884 (1092)
Q Consensus 811 s~d-g~-~l~~~sd-g~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~ 884 (1092)
... +. .++.+.+ +.|..||+.+.....+++ ...+.|++++.+| .+.++++|+..|.+.+||++-+.++..+. +
T Consensus 1158 ~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P 1236 (1431)
T KOG1240|consen 1158 TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHP 1236 (1431)
T ss_pred cccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCc
Confidence 332 23 5555654 889999998776665544 3457899999999 89999999999999999999988887775 3
Q ss_pred ccCCeEEEEEcCCC---CEEEEEe--CCCcEEEEEcCCCceeeeeeeecCCCC----c-------CCCCCceEEEEecCC
Q 001358 885 HSKRVTGLVFSDAL---NILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGV----M-------TLAPSETHIQFHKDQ 948 (1092)
Q Consensus 885 h~~~V~~l~~spdg---~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~----~-------~~~~~v~~l~~s~dg 948 (1092)
+..+|..+...|-. ...++++ ..+.|.+|++.+|.............. . +.........+...+
T Consensus 1237 ~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~ 1316 (1431)
T KOG1240|consen 1237 ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN 1316 (1431)
T ss_pred ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC
Confidence 55788888777633 4555554 467899999999865443222200000 0 000122333444445
Q ss_pred CEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcE-EEEECC-----CCceEEeeccccc
Q 001358 949 TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEAS-----NLEVQCRILSTAY 1021 (1092)
Q Consensus 949 ~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i-~vwd~~-----~~~~~~~~~~~~~ 1021 (1092)
.++.+ ++|..|+.||....+...-...+.+.......++.+ .-++.++.--.. ...... .+...........
T Consensus 1317 ~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~ 1395 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPS 1395 (1431)
T ss_pred ceeeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchhhcccccccccCCC
Confidence 55666 689999999998665442222332333333333332 223333221000 011111 1222344455666
Q ss_pred cCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001358 1022 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1022 ~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
.++..|.++|..++....+ ..++++++.||.|.+|.
T Consensus 1396 ~ps~~H~d~Itdma~~~~~--q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1396 DPSTYHHDPITDMATLKSE--QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCcccccchhhhhhhhccC--ccEEEEecCCCeeeecC
Confidence 7777789999988888776 47999999999999994
No 220
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.59 E-value=1.6e-13 Score=153.43 Aligned_cols=252 Identities=17% Similarity=0.203 Sum_probs=185.3
Q ss_pred CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCce--eeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC--C
Q 001358 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG--S 409 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~--~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg--~ 409 (1092)
..+|+|++|+|....++|.|..+|.|.+||+..+... .... .....|..+|+.+.|-.+- .
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls---------------~~~~sh~~~v~~vvW~~~~~~~ 306 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS---------------ALEVSHSEPVTAVVWLQNEHNT 306 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc---------------cccccCCcCeEEEEEeccCCCC
Confidence 3499999999998889999999999999999987652 2111 1255699999999998754 4
Q ss_pred EEEEEeCCCEEEEEEccCCCCccceEEec---------ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE---CCCCc-
Q 001358 410 LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AVTGS- 476 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd---~~~~~- 476 (1092)
-+++++.||.|..|++..-........+. .-...+++++|.+.... .++.|+.+|.|..=+ ...+.
T Consensus 307 ~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 307 EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCccccc
Confidence 49999999999999887533211110111 12236899999988776 788899999988733 22222
Q ss_pred ----eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358 477 ----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 477 ----~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
.+..+..|.++|+++.++|-.. ..+.+++ |-++++|.-. ...+...+..+...+++++|||-.-.++++.
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~--- 460 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV--- 460 (555)
T ss_pred ccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE---
Confidence 2335567889999999877543 3444444 9999999887 5666667777777799999999887776665
Q ss_pred CCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001358 552 EGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1092)
+++|.+.+||+..... +.+..... .....+.|+++|+.+++|...|++.+|++..
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCCceehhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 4578899999975432 33332222 5677788999999999999999999999864
No 221
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=2.9e-15 Score=164.31 Aligned_cols=339 Identities=18% Similarity=0.204 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcCccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCC----CCcCcccc
Q 001358 171 RLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSS----MLTDSAVS 246 (1092)
Q Consensus 171 rL~~Ll~qa~~~q~~~~~~~~~~~~~~sL~~dh~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 246 (1092)
-|..|+-|.+++|+.+|+.|.++.+++|||..|.|++ |-+..+++-++..+.. ..++.+
T Consensus 1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPE---------------pk~~~~ap~N~t~Rl~~rel~~~y~g-- 1076 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPE---------------PKRLLEAPLNMTGRLGTRELQSFYSG-- 1076 (1516)
T ss_pred cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCC---------------hHHHhhcchhhhhcccchhhcCcccc--
Confidence 4999999999999999999999999999999999998 3333332222222110 000111
Q ss_pred cccccCCCCCcccccccCCCCCCcccCCCccccccccCCcceecCcccCCcCCCCCCCchhhhcccccCCccccCCCcce
Q 001358 247 FVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 326 (1092)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~ 326 (1092)
.|+. ....+.+|.++ ..
T Consensus 1077 ----------------------------------------------V~g~-------~~dr~~IFSRF----------r~ 1093 (1516)
T KOG1832|consen 1077 ----------------------------------------------VHGN-------RRDRQFIFSRF----------RS 1093 (1516)
T ss_pred ----------------------------------------------cccC-------cccchhhHhhc----------cc
Confidence 0110 00011112221 22
Q ss_pred eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
.++++.|+..-+|++||-+.+ .|++|+..|.|+++++.+|..... ...|+.+|+.+.=|.
T Consensus 1094 w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~ 1153 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSV 1153 (1516)
T ss_pred chhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccccccccccccccC
Confidence 367788999999999999988 699999999999999999988865 667999999999999
Q ss_pred CCCEEEEEeCC--CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ec
Q 001358 407 DGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG 483 (1092)
Q Consensus 407 dg~~las~~~d--~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~ 483 (1092)
||..+++.+.- ....+|++.+- ....+++. .-.++.|+..... .++ |..-..+.+||++|+..+.++ .+
T Consensus 1154 dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~-r~~-gt~~d~a~~YDvqT~~~l~tylt~ 1225 (1516)
T KOG1832|consen 1154 DGSTQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF-RAL-GTEADDALLYDVQTCSPLQTYLTD 1225 (1516)
T ss_pred CcceeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH-HHh-cccccceEEEecccCcHHHHhcCc
Confidence 99988776443 35789998752 22222332 3457888876553 333 333346899999999887663 22
Q ss_pred ---CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEE
Q 001358 484 ---HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 484 ---~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
....-+...|+|. ..+++ .|| .+||.+..+.+..+.... ....-.|+|.|..++..+ .||
T Consensus 1226 ~~~~~y~~n~a~FsP~--D~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS---------EIw 1288 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSPC--DTLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS---------EIW 1288 (1516)
T ss_pred chhhhhhccccccCCC--cceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec---------hhh
Confidence 1222244556543 33443 344 469998877666554333 112336999999998864 479
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe--C---------------CCeEEEEECCCCceEEEEeCCCCCC
Q 001358 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--D---------------DHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~---------------dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
|+++.+.++...... -..+.|+..|+.++..- . -...+-++..+.+.+.++....
T Consensus 1289 D~RTF~lLh~VP~Ld-----qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R--- 1360 (1516)
T KOG1832|consen 1289 DMRTFKLLHSVPSLD-----QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDR--- 1360 (1516)
T ss_pred hhHHHHHHhcCcccc-----ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeeccc---
Confidence 999998887776544 45677888887665432 0 0234556666666677776543
Q ss_pred CCceEEEccCCCEEEEEeC
Q 001358 624 ENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~ 642 (1092)
.+..+|-+|...++++...
T Consensus 1361 ~~~Dlct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1361 CLLDLCTEPTDSFLGVIEM 1379 (1516)
T ss_pred chhhhhcCCccceEEEEec
Confidence 3566777777777766543
No 222
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.4e-14 Score=149.56 Aligned_cols=245 Identities=13% Similarity=0.178 Sum_probs=170.3
Q ss_pred eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
..+.|.||++-|.|++|+.||. +|++||.|-.+.|||.-..+.++. +-+||...|.++.|-
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeee
Confidence 3478999999999999999998 899999999999999987766653 367899999999999
Q ss_pred C--CCCEEEEEeCCCEEEEEEccCCC-------CccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001358 406 P--DGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 406 p--dg~~las~~~d~~i~iwd~~~~~-------~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
| +.+.+++|..|..|+++|+...+ ...+...+..|...|..++-.|++.. .+.+++.||+|+-+|+....
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCc
Confidence 9 57788999999999999998521 12223345679999999999999965 79999999999999987532
Q ss_pred -eeEE---------EecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-----ecCCCCceEEEE-EecC
Q 001358 477 -RTYS---------FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMA-YSAN 540 (1092)
Q Consensus 477 -~~~~---------~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~i~~~~-~s~d 540 (1092)
+... +...--...++.++|. +..+|+.|+.|-..++||.+...+... ...+..+..++. |+|.
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~ 260 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG 260 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCC-CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence 1111 1111123456677766 347999999999999999543211110 011111222222 2222
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Q 001358 541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1092)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1092)
+- .. ..|..... ...++.++|+|+|.-+++.-....|+++|+..++.....
T Consensus 261 hl----kn--------------~~gn~~~~-------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 261 HL----KN--------------SQGNLDRY-------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cc----cC--------------cccccccc-------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 21 00 00111000 023667899999988888766678999999887765544
No 223
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=3.2e-12 Score=137.70 Aligned_cols=510 Identities=12% Similarity=0.140 Sum_probs=302.1
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCC------------ccceEEecccccceeEEEeeCCCCcEEEEEEe
Q 001358 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~------------~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~ 462 (1092)
......|++|+....|+|+|+.||.+++-.+.+... +....++.||.+.|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 456789999999999999999999999998875432 112236789999999999998887 699999
Q ss_pred CCCcEEEEECCCCceeEEEe--cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecC
Q 001358 463 DDKTIKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 540 (1092)
Q Consensus 463 ~d~~i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d 540 (1092)
.+|.|.||-+-.|.-...+. .....|.+++| +.||..+.....||.|.+=.++..+ +.--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeeccc
Confidence 99999999988776544332 24456788888 4577888888888888776554322 1111122223456889999
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCC-------eEEEEEeec-cccCCceEEEEEc--------CCCCEEEEEeCCCeEEE
Q 001358 541 GRRLFSCGTSKEGESFLVEWNESEG-------AIKRTYQGL-QLQHNSVSVVHFD--------TAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~-------~~~~~~~~~-~~~~~~v~~~~~~--------~~~~~l~~~s~dg~i~i 604 (1092)
.+.++.+-. ++.+.++|.+.. .+.....+. ......+..+.|. |+...++++-.+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 988877654 445888886532 111111111 0001234445553 57889999999999988
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe---------EEEEECCCCCeeeecccccccceeeeecCC
Q 001358 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR---------IKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~---------i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1092)
-.-.+......+... ..+....|+++|..|++++.+.. |.+|. .-+..+..++.+.
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg----------- 308 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPG----------- 308 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCC-----------
Confidence 765544433333322 34778899999999999987532 11111 1122222233233
Q ss_pred cccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC
Q 001358 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 755 (1092)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 755 (1092)
..|+++.|-..|-+++. .-|
T Consensus 309 -----------------------------------------------------------~~It~lsWEg~gLriA~-Avd 328 (1189)
T KOG2041|consen 309 -----------------------------------------------------------SCITGLSWEGTGLRIAI-AVD 328 (1189)
T ss_pred -----------------------------------------------------------ceeeeeEEcCCceEEEE-Eec
Confidence 33444444444332222 222
Q ss_pred CeeEEeeecCCcc----------ccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCe
Q 001358 756 GVHLMWRWPRNDL----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV 824 (1092)
Q Consensus 756 g~i~lw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~ 824 (1092)
+.|++=++...-. ...+.......+..||..+.+.... .-....+++++.+--.|+.-. ++.
T Consensus 329 sfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~ 401 (1189)
T KOG2041|consen 329 SFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGV 401 (1189)
T ss_pred ceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCC
Confidence 2333322211100 0011111223455677666553322 223455677766655555444 355
Q ss_pred EEEEEc-CCceeeEEec----------CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee---------------
Q 001358 825 ISLYIV-MTFKTILTIM----------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------------- 878 (1092)
Q Consensus 825 i~iwd~-~~~~~~~~~~----------~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--------------- 878 (1092)
+.-++. ++...+..+. ..-..|.-.-..- ++..++.++.+ .+.+|.....+.
T Consensus 402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~ 479 (1189)
T KOG2041|consen 402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRF 479 (1189)
T ss_pred CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccc
Confidence 544421 1111111110 0001122111222 56677777766 477786533211
Q ss_pred -----------------eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceE
Q 001358 879 -----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 941 (1092)
Q Consensus 879 -----------------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 941 (1092)
..++.|..++|-+++.| .++|..+-..|.|.-+.+...-. .....-. ..+.+
T Consensus 480 h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l-----~n~y~~n----~~~y~ 548 (1189)
T KOG2041|consen 480 HGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVL-----TNSYPVN----PSIYS 548 (1189)
T ss_pred cCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceee-----eeccccC----chhee
Confidence 13445667788888876 57888899999999999987432 2222221 35889
Q ss_pred EEEecCCCEEEE-EeCCcEEEEEcC---CceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358 942 IQFHKDQTRFLL-VHETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 942 l~~s~dg~~la~-~~d~~v~lwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
++.+-+...+|+ -.-|.+.+.|+. +|..+.-+.......|+.+.|..|...|++--....++|++-.
T Consensus 549 ~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgn 619 (1189)
T KOG2041|consen 549 IKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGN 619 (1189)
T ss_pred EeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCc
Confidence 999999998888 355677777665 4555554555567789999998888766655555556666543
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=1e-12 Score=129.10 Aligned_cols=239 Identities=12% Similarity=0.182 Sum_probs=169.2
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCC--CeEEEEEcCCCCCEEE-EEeCC------CeEEEEEc
Q 001358 803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP--TATSLAFNPHDNNVIA-IGMDD------STILIYNA 873 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~d~~~la-sg~~d------g~v~iwd~ 873 (1092)
....+++|.-|...++++.+...+||+++..+.....+.+.+ .+..+-|- .++|| +|+.+ ..|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence 345569999999999999999999999986554333222222 33334443 23444 44443 38999996
Q ss_pred CCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEec--CCCEE
Q 001358 874 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRF 951 (1092)
Q Consensus 874 ~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~l 951 (1092)
...+++..+. ...+|.++.+++| .++.. -.+.|+||.+...-.. ...+.+..... . -++..| .-.+|
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~-l~~~et~~NPk----G--lC~~~~~~~k~~L 151 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKL-LHVIETRSNPK----G--LCSLCPTSNKSLL 151 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhh-eeeeecccCCC----c--eEeecCCCCceEE
Confidence 6677788777 7788999999877 55554 3566999999853211 12222222111 1 233333 33444
Q ss_pred EE-E-eCCcEEEEEcCCcee-eeeeccCCCcCEEEEEEecCCCEEEEEeCCCc-EEEEECCCCceEEeeccccccCCCCc
Q 001358 952 LL-V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTS 1027 (1092)
Q Consensus 952 a~-~-~d~~v~lwd~~~~~~-~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~ 1027 (1092)
|. | .-|+|+|-|+...+. ......+|...|.+++.+-+|.+|||+|..|+ |||||..+|+.++.++... .
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~------d 225 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV------D 225 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC------c
Confidence 54 4 458999999986665 34457789999999999999999999999998 8999999999999987322 1
Q ss_pred cCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001358 1028 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1028 ~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
...|+ +++|+| +..+|+++++-|+|++|.+.+..
T Consensus 226 ~A~iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 226 RADIY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred hheEE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 22355 889999 58999999999999999998755
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.5e-12 Score=129.67 Aligned_cols=260 Identities=12% Similarity=0.114 Sum_probs=165.6
Q ss_pred cccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC
Q 001358 734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 813 (1092)
Q Consensus 734 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~d 813 (1092)
...|++++|-|.+..-++.+-.+.|.+|........ ...++ ..+..+... +..++| ..|+++.+.+|
T Consensus 140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln~-------~r~~~---~~s~~~~qv--l~~pgh-~pVtsmqwn~d 206 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA-------NRNIR---MMSTHHLQV--LQDPGH-NPVTSMQWNED 206 (445)
T ss_pred hcceeEEEeccCCcceeeeeecceeEEEEcCccccc-------ccccc---cccccchhh--eeCCCC-ceeeEEEEcCC
Confidence 345788888887776777777778899986543210 00001 011111111 222345 78999999999
Q ss_pred CCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEE
Q 001358 814 DAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891 (1092)
Q Consensus 814 g~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1092)
|..+++++ +..|.|||..++..+.-.....+.++-+.||| |+.+|+.++-|+..++|+.....-..+..--.+.|+.
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt 285 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT 285 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence 99999998 57899999999887766555667899999999 8999999999999999965543323333334558999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCce----------eeeeee------ecCCCCcCCCCCceEEEEecCCCEEEEEe
Q 001358 892 LVFSDALNILVSSGGDAQIFVWDVDGWGI----------QTCRSL------QTPDGVMTLAPSETHIQFHKDQTRFLLVH 955 (1092)
Q Consensus 892 l~~spdg~~l~s~s~Dg~i~iwd~~~~~~----------~~~~~~------~~~~~~~~~~~~v~~l~~s~dg~~la~~~ 955 (1092)
.+|+|+|.+|..+.. |.=++|.+.-... .....+ ....+..-..+.+.+++|.|.|.+||+..
T Consensus 286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 999999988765543 2334555432110 000111 11112111225789999999999999953
Q ss_pred C---------CcEEEEEcCCceeeeeeccCC--CcCEEEEEEec---CCCEEEEEeCCCcEEEEECC
Q 001358 956 E---------THLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 956 d---------~~v~lwd~~~~~~~~~~~~~h--~~~v~~l~fs~---dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
. ..|.+||....-.+...+.+- ......++|.| +|.+|..+=+-|.+.-|++.
T Consensus 365 Kg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 365 KGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 2 236677776544333322121 22355667776 66777777777777777654
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.5e-12 Score=147.60 Aligned_cols=238 Identities=10% Similarity=0.114 Sum_probs=157.7
Q ss_pred CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe---CCCEEEEEEccCCCCccc
Q 001358 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---SKHIVQLYAYHGGSDARQ 433 (1092)
Q Consensus 357 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~---~d~~i~iwd~~~~~~~~~ 433 (1092)
..|.+||.+.+.... +..+...+.+.+|||||+.||..+ .+..|.+|++.+|+...
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~- 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ- 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence 368888887665432 445677899999999999999764 24579999998875322
Q ss_pred eEEecccccceeEEEeeCCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecC-Ce
Q 001358 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK 510 (1092)
Q Consensus 434 ~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~ 510 (1092)
+....+.+...+|+|||+.+ +++.+.++ .|.+||+++++..+ +..+...+....| ++||+.|+..+.+ +.
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~L-a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~w--SPDG~~I~f~s~~~g~ 310 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTW--FPDSQNLAYTSDQAGR 310 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCEE-EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEE--CCCCCEEEEEeCCCCC
Confidence 22233345578999999952 33334444 58999998887654 3334445666777 4577777766654 55
Q ss_pred EEEE--EcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358 511 IKAW--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 511 i~vw--d~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
..+| |+..+.. ..+...........|+|||++++..+... +...|++||+.+++... +... .......|+|
T Consensus 311 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~-Lt~~----~~~~~p~~Sp 383 (429)
T PRK03629 311 PQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQV-LTDT----FLDETPSIAP 383 (429)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEE-eCCC----CCCCCceECC
Confidence 5555 5554433 33333444556789999999998876432 35679999998887543 3321 1234578999
Q ss_pred CCCEEEEEeCCCe---EEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358 589 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 589 ~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
||+.++.++.++. +.++++ +|.....+..+. ..+...+|+|
T Consensus 384 DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 384 NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence 9999999887664 677777 455555555432 2467788876
No 227
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.56 E-value=6.8e-13 Score=130.28 Aligned_cols=232 Identities=15% Similarity=0.177 Sum_probs=175.8
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEEC-C
Q 001358 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-V 473 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~-~ 473 (1092)
-..+|+|.||++|+..+|++-....|.||...........+++..|...|+.++|+|.+. .|++|+.|...+||.. .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346899999999999999999999999999998887777889999999999999999998 6999999999999997 4
Q ss_pred CC--ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE----EecCCCCceEEEEEecCCCEEEEE
Q 001358 474 TG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 474 ~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
.+ ++.-.+..+....+++.|+|.+ ..+++|+....|.||=++....-. .-......|.++.|+|++-+|+++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 44 3344556688899999997654 689999999999999776654332 233445678999999999999998
Q ss_pred ecCCCCceeEEEEeC-----CC-------------CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001358 548 GTSKEGESFLVEWNE-----SE-------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~-----~~-------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1092)
+. |+..+++.. +. |+++..+.. ..+.+..+.|+|+|+.|+-.+.|.++.+-|...
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~---~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS---SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc---CCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 86 444565532 11 222333332 247899999999999999999999999999877
Q ss_pred Cc-eEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001358 610 VQ-LLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1092)
Q Consensus 610 ~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1092)
.. .+....... -+..++.|-.+...+++
T Consensus 238 p~~~v~~~~~~~--lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 238 PSERVQSVATAQ--LPLLSVSWISENSVVAA 266 (361)
T ss_pred Cchhccchhhcc--CCceeeEeecCCceeec
Confidence 65 233332221 23456666554443333
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.3e-12 Score=147.25 Aligned_cols=237 Identities=13% Similarity=0.072 Sum_probs=161.3
Q ss_pred CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC---CCEEEEEEccCCCCccc
Q 001358 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 433 (1092)
Q Consensus 357 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 433 (1092)
..|.+||...+.... +..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 478888886554332 5568889999999999999998763 468999999987532
Q ss_pred eEEecccccceeEEEeeCCCCcEEEEEEeCCCc--EEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEec-CC-
Q 001358 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG- 509 (1092)
Q Consensus 434 ~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg- 509 (1092)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||+.+++. ..+..+........| ++||+.|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~--spDG~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSY--SPDGSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeE--cCCCCEEEEEECCCCC
Confidence 34556677889999999995 3445665655 77789888765 445556655666677 457777776653 34
Q ss_pred -eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358 510 -KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 510 -~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
.|.++|+....... +......+....|+|||+.|+...... +...|.+||..++.. +.+.. . ..+....|+|
T Consensus 314 ~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~sp 386 (435)
T PRK05137 314 PQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAP 386 (435)
T ss_pred CeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCce-EeccC-C---CCCCCCeECC
Confidence 57777876554433 333344566788999999998876432 356799999866543 33322 1 2456788999
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358 589 AKDQILAAGDD------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 589 ~~~~l~~~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
||+.++..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 99998775532 3578888876554 3443222 356667776
No 229
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.55 E-value=2.1e-14 Score=147.37 Aligned_cols=270 Identities=16% Similarity=0.171 Sum_probs=213.0
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC
Q 001358 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
.......+.++.+|++|+.|+..|.|..+|+.++.... ++. -...|.++.|..+.+ +++ ......++||| ..
T Consensus 128 ~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~A-VAQK~y~yvYD-~~ 199 (545)
T KOG1272|consen 128 PEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFA-VAQKKYVYVYD-NN 199 (545)
T ss_pred cccCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHH-hhhhceEEEec-CC
Confidence 34567789999999999999999999999999986554 332 345789999998887 444 45577899999 88
Q ss_pred CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCc
Q 001358 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
|..++.++.|. .|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-.|.. +
T Consensus 200 GtElHClk~~~-~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----n 272 (545)
T KOG1272|consen 200 GTELHCLKRHI-RVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----N 272 (545)
T ss_pred CcEEeehhhcC-chhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----C
Confidence 88898887554 67788886654 57888999999999999999998888888888999999998887777765 7
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001358 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
++|.+|.+.+.+.+..+..|. ++|.++++.++|.++++++.|..++|||++....+.+..... ....+++|..|
T Consensus 273 GtVSlWSP~skePLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkg 346 (545)
T KOG1272|consen 273 GTVSLWSPNSKEPLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PASNLSLSQKG 346 (545)
T ss_pred ceEEecCCCCcchHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Ccccccccccc
Confidence 789999999999999999988 999999999999999999999999999999888776665422 35778888766
Q ss_pred CEEEEEeCCCeEEEEECCCC-----CeeeecccccccceeeeecCCcccccccccCCc
Q 001358 635 TLLAVIANENRIKILETPES-----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 687 (1092)
. ||. +....+.||.-... .....-......|..+.|+|....+++|-..|-
T Consensus 347 l-LA~-~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 347 L-LAL-SYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred c-eee-ecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 3 333 34457889953211 111111222348899999999998888766653
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=3.1e-14 Score=146.09 Aligned_cols=273 Identities=18% Similarity=0.189 Sum_probs=212.6
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
....+.|+.+|+. ++.|+..|.|..+|+.++....... -...|..+.|-.+.+++|++
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVA- 188 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVA- 188 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhh-
Confidence 6778999999995 6667777999999999998876533 23578899999999999998
Q ss_pred CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecc
Q 001358 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
....++|||-.. ..+. .++.| ..|..+.|.|--- +|++++..|.++.-|+.+|+.+..+....+.+..++-+|
T Consensus 189 QK~y~yvYD~~G-tElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 189 QKKYVYVYDNNG-TELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred hhceEEEecCCC-cEEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 455699999765 3333 34444 4699999999765 899999999999999999999999988888888888765
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001358 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
.+ ..+-+|...|+|.+|.....++...+..|.++|.++++.++|+++++.+. |..+.|||+++-..+.++.. .
T Consensus 262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t-p 334 (545)
T KOG1272|consen 262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT-P 334 (545)
T ss_pred cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec-C
Confidence 43 57888999999999999999999999999999999999999999999987 66699999998877666665 2
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCc--eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEE
Q 001358 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1092)
.+...+++|..| +++.+....|.||. .-.+. .-...-.|.....|..+.|.|-...|.+|...|.-.|.
T Consensus 335 ---~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 335 ---HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred ---CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 467778888765 55666667899994 33322 11111112222368899999988888887766654443
No 231
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=6e-11 Score=128.13 Aligned_cols=533 Identities=10% Similarity=0.090 Sum_probs=321.3
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
...|++|+.... ++|+|+.||.++|-.+.+...-.... .+.+.........+.||++.|.-+.|+.+.+.|-+..
T Consensus 16 kL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 16 KLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred eEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 678999999988 69999999999999987754322100 0112222233345899999999999999999999999
Q ss_pred CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee-EEEecCCcceEEEeec
Q 001358 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v~~i~~~ 494 (1092)
.+|.|.+|-+-.|.-..... -......|.+++|+.||. .++....||.|.|=.++..+.- +.+++. ....+.|
T Consensus 91 t~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~w- 164 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLW- 164 (1189)
T ss_pred CCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccceee-
Confidence 99999999998876544321 123556799999999999 6777788888877665443221 122221 1223445
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCC-------ceE----EecCCCCceEEEEEe--------cCCCEEEEEecCCCCce
Q 001358 495 AKENIHFIFSISVDGKIKAWLYDSLG-------ARV----DYDAPGLGCTRMAYS--------ANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~----~~~~~~~~i~~~~~s--------~dg~~l~~~~~~~~~~~ 555 (1092)
++|.+.++.+-..|.++++|.+..- +.. .+......+..+.|. ||...++.|.. ++
T Consensus 165 -s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----nG 239 (1189)
T KOG2041|consen 165 -SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----NG 239 (1189)
T ss_pred -cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----Cc
Confidence 4466677777788999999865321 111 111122234445442 47778888875 34
Q ss_pred eEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCceEEEEeCCCCCCCC
Q 001358 556 FLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 556 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
.+.+....+ ..++-.-.+ -.+....|+++|..+++++.+ +.|.+|.. -|..+.++..++. .|
T Consensus 240 r~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CI 311 (1189)
T ss_pred eehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--ee
Confidence 455543322 222222222 357788999999999998743 24555553 4677788877654 58
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCCee--------eecccccccceeeeecCCcccccccccCCceeecCCCCCC
Q 001358 626 PRICFNKNGTLLAVIANENRIKILETPESNSV--------DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 697 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 697 (1092)
++++|-..|-.++.+- |+.|++=+++..-.. ........+.
T Consensus 312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~------------------------------ 360 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQ------------------------------ 360 (1189)
T ss_pred eeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcc------------------------------
Confidence 9999988777776654 567777665543111 1111111111
Q ss_pred cccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccc
Q 001358 698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 777 (1092)
Q Consensus 698 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~ 777 (1092)
-.|.+||..+++..-. ......++++..+.-.|+.-..+|.+.-++--.+. ...
T Consensus 361 ----------y~i~Fwdtk~nek~vK---------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~-------~~~ 414 (1189)
T KOG2041|consen 361 ----------YGIMFWDTKTNEKTVK---------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLENR-------SRV 414 (1189)
T ss_pred ----------eEEEEEecccChhhhh---------hhcceeehheecccEEEEeccccCCCcchhhhhcc-------cce
Confidence 2345566543322111 11223455666555555555555554433100000 000
Q ss_pred cCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee----------------------
Q 001358 778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------------------- 835 (1092)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~---------------------- 835 (1092)
....+.+.- |. .+. ..-..|.-.-..-++.+++.++...+.+|.....+.
T Consensus 415 ~~l~LCNSI-GT-----~lD--~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ 486 (1189)
T KOG2041|consen 415 YFLQLCNSI-GT-----SLD--YKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPE 486 (1189)
T ss_pred EEEeeeccc-CC-----cCC--CCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCcc
Confidence 000000000 00 000 011122222333477888888888888887532110
Q ss_pred ----------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEe
Q 001358 836 ----------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 905 (1092)
Q Consensus 836 ----------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 905 (1092)
..++.+..++|.+++.+ .++|.++-..|.|.-|.+.+........ -+..|.++++.-+...+|...
T Consensus 487 ga~d~~l~ys~kt~~G~~DpICAl~~s---dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId 562 (1189)
T KOG2041|consen 487 GAQDRTLEYSTKTLLGSKDPICALCIS---DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIID 562 (1189)
T ss_pred chhhceeeccceeeccCCCcceeeeec---ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhh
Confidence 12345566788888886 4699999999999999999877666655 456789999988889999988
Q ss_pred CCCcEEEEEcCC-CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCC
Q 001358 906 GDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE 966 (1092)
Q Consensus 906 ~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~ 966 (1092)
.-|.+.+.|+.- ........+...+. ..|..+.|..|+..+++- ....++|++-.+
T Consensus 563 ~~gv~tf~dLd~d~~g~ql~~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrgnd 620 (1189)
T KOG2041|consen 563 LVGVVTFQDLDYDFDGDQLKLIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRGND 620 (1189)
T ss_pred hhceeeeeecccccCcceeeeeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecCcC
Confidence 899999998872 22222222222222 258899999998877774 444577777543
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.2e-12 Score=148.55 Aligned_cols=234 Identities=14% Similarity=0.106 Sum_probs=153.3
Q ss_pred ccCCCcceeEecccCCCCceEEeecCCCceEEEEEc--CcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCC
Q 001358 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1092)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~ 396 (1092)
+.+......+.+..+.+.+...+|||||+.++.+.. .+..|.+||+.+|+... +....
T Consensus 183 ~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~ 242 (429)
T PRK03629 183 VSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFP 242 (429)
T ss_pred EEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCC
Confidence 344444444556667778999999999996544332 23579999999886543 12223
Q ss_pred CcEEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC-CCc--EEEE
Q 001358 397 VSVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKT--IKVW 470 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~--i~vw 470 (1092)
+.+..++|||||+.|+.. +.++ .|.+||+.+++.. .+..+...+....|+|||+ .|+..+. ++. |.++
T Consensus 243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKV 316 (429)
T ss_pred CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEE
Confidence 345568999999999876 3344 5999999887533 2444555688999999999 4554443 344 5555
Q ss_pred ECCCCceeEEEecCCcceEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEE
Q 001358 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
|+.+++. ..+..+........| ++||++|+..+.+ ..|.+||+.++.... +.. ........|+|||+.|+..
T Consensus 317 d~~~g~~-~~lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 317 NINGGAP-QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYS 391 (429)
T ss_pred ECCCCCe-EEeecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEE
Confidence 7766654 344334444455666 4577788776543 358888988765443 222 1233467899999999998
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
+.++. ...+++++. +|...+.+.++. +.+...+|+|
T Consensus 392 s~~~~-~~~l~~~~~-~G~~~~~l~~~~---~~~~~p~Wsp 427 (429)
T PRK03629 392 SSQGM-GSVLNLVST-DGRFKARLPATD---GQVKFPAWSP 427 (429)
T ss_pred EcCCC-ceEEEEEEC-CCCCeEECccCC---CCcCCcccCC
Confidence 86443 556888887 455556666655 6677788877
No 233
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.6e-12 Score=137.20 Aligned_cols=283 Identities=13% Similarity=0.184 Sum_probs=204.3
Q ss_pred cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
+|...-+.+..||||+|++|+|..--.|++||+..-.......+ ....|.-.-.|-|-..+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD~SK~ 109 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDDYSKS 109 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccchhhh
Confidence 45668889999999999999999999999999987654432111 23456666667676777
Q ss_pred EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEE
Q 001358 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
+.-..|.+|.+..-.+ ... .++ -...-..++++.-... |+.++....|+-.+++.|+.+..+....+.++++
T Consensus 110 v~L~~DR~IefHak~G-~hy----~~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 110 VFLQNDRTIEFHAKYG-RHY----RTR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred eEeecCceeeehhhcC-eee----eee-cCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceee
Confidence 7777888776644322 111 011 1112234555544443 4444445578899999999999998888999999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------C-----CceEEEEEecCCCEEEEEecCCCCceeEEEE
Q 001358 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------G-----LGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~-----~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
..++. ..+|++|+.+|.|.+||.+.......+... . ..|+++.|+.+|-.+++|.. .|.+++|
T Consensus 182 ~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iy 255 (703)
T KOG2321|consen 182 SINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIY 255 (703)
T ss_pred eecCc--cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEE
Confidence 88654 368999999999999999887665544322 1 24899999999999999876 6679999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCC--CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001358 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
|+++.+.+..-. |. ..-+|..+.|.+.+ +.+++ .....++|||-.+|+....+... ..++.+|+-|++.+++
T Consensus 256 DLRa~~pl~~kd-h~-~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 256 DLRASKPLLVKD-HG-YELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSGMFF 329 (703)
T ss_pred EcccCCceeecc-cC-CccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecccc---CCcCceeeecCCceEE
Confidence 999888764433 22 23678889997763 33444 34577999999999999888654 4589999999999999
Q ss_pred EEeCCCeEEEEECCC
Q 001358 639 VIANENRIKILETPE 653 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~ 653 (1092)
++-.++.+..|-++.
T Consensus 330 ~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 330 TANESSKMHTYYIPS 344 (703)
T ss_pred EecCCCcceeEEccc
Confidence 999988887776654
No 234
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.54 E-value=5.3e-09 Score=127.27 Aligned_cols=569 Identities=11% Similarity=0.122 Sum_probs=308.1
Q ss_pred CCCCceEEeecCCCceEEEEEcCcCcEEEE----ecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC
Q 001358 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLW----DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~d~~i~iw----d~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
..+.|.++.|-+|.. -+..+..+|.|.+. +..+..... ...-...|.+++||||+
T Consensus 74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 346899999999997 46777788999999 555544332 22245789999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce-----------
Q 001358 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR----------- 477 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~----------- 477 (1092)
..||..+.++++.+-+-.- +.+. +..-+.. .|-. + ..++.|.-+.=.-+.-..|+.
T Consensus 133 Ella~vT~~~~l~~mt~~f-d~i~---E~~l~~~-----~~~~-~---~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDF-DPIS---EVPLDSD-----DFGE-S---KHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred CEEEEEeCCCEEEEEeccc-eEEE---EeecCcc-----ccCC-C---ceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 9999999999887764321 1111 1111110 1100 1 133332211111111011111
Q ss_pred ---eEEEecCCcceEEEeecccCCccEEEEEec---C---CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEe
Q 001358 478 ---TYSFEGHGAPVYSLCPHAKENIHFIFSISV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 478 ---~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
...+. +...-..++| .+||.++++.+. . ..+|||+-+ +......+...+--.+++|.|.|+++++..
T Consensus 200 ~~d~~~~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q 275 (928)
T PF04762_consen 200 KVDEGKLS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQ 275 (928)
T ss_pred ccccCccc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence 01112 2333344555 779999998875 3 469999754 332223332333345789999999999887
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeecc-ccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--EEEEeCCCCCCCC
Q 001358 549 TSKEGESFLVEWNESEGAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPEN 625 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v 625 (1092)
. ......|..|. ++|-.-..|.-.. .....|..+.|++++..|+..-.|. |.+|...+... .+.+..... ..+
T Consensus 276 ~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~ 351 (928)
T PF04762_consen 276 R-LPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESV 351 (928)
T ss_pred E-cCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCC
Confidence 5 23345676776 4555555554431 1246799999999999999977655 99999887653 334443322 234
Q ss_pred ceEEEcc-CCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceee
Q 001358 626 PRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 704 (1092)
Q Consensus 626 ~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~ 704 (1092)
..+.|+| +...|.+.+.+|.+..++..-.. ..++.. +|+..-.+..
T Consensus 352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v---------------~~s~~~------------------~~~D~g~vaV 398 (928)
T PF04762_consen 352 NFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV---------------SRSPGS------------------SPNDNGTVAV 398 (928)
T ss_pred CceEECCCCCCEEEEEecCCcEEEEEEEEEE---------------EecCCC------------------CccCceEEEE
Confidence 5699999 45567788777887766543110 000000 0111111111
Q ss_pred ccccccceecee---eccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCc
Q 001358 705 EAENKSEVEKPL---FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1092)
Q Consensus 705 ~~d~~i~~w~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~ 781 (1092)
-...++++-.+. .+.|.....+. -...|..++|++++..+++...||.+.+|.++.............
T Consensus 399 IDG~~lllTpf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~---- 469 (928)
T PF04762_consen 399 IDGNKLLLTPFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL---- 469 (928)
T ss_pred EeCCeEEEecccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh----
Confidence 011123332221 11222223333 345799999999999899999999999999766432210000000
Q ss_pred cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC----CeEEEEEcCCce---eeEEecCCCCCeEEEEEcCC
Q 001358 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG----GVISLYIVMTFK---TILTIMPPSPTATSLAFNPH 854 (1092)
Q Consensus 782 ~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd----g~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~ 854 (1092)
....... ...... ......+..++|..+..+++.... ..+.+++....+ .......-.+.+..+...+
T Consensus 470 -~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 544 (928)
T PF04762_consen 470 -SSISLDS-MDISDS--ELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP- 544 (928)
T ss_pred -hhccccc-cccccc--ccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-
Confidence 0000000 000000 013456778888888877776653 458888874332 2333333445555555665
Q ss_pred CCCEEEEEeCCCeEEEEEcCCcee-eEeeccccCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC
Q 001358 855 DNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG 931 (1092)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~ 931 (1092)
+...++.-..+|.+...+...... +..|..-...+..+.+.... ..++.-+..|.+++ .+ . .+.
T Consensus 545 ~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la---- 611 (928)
T PF04762_consen 545 DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA---- 611 (928)
T ss_pred CCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE---CC-E-----EEe----
Confidence 444466677899998776654322 22333222222223332222 14444455554443 21 1 111
Q ss_pred CcCCCCCceEEEEecCCCEEE-EEeCCcEEEEEcC-CceeeeeeccC----CCcCEEEEEEecCCCEEEEEeCCCcEEEE
Q 001358 932 VMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAE-ELTCLKQWFPI----SSVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 932 ~~~~~~~v~~l~~s~dg~~la-~~~d~~v~lwd~~-~~~~~~~~~~~----h~~~v~~l~fs~dg~~l~t~s~Dg~i~vw 1005 (1092)
..++++++ .+.+|+ +.....+++.++. ....+...... +...+..+ .-|..|+++-....=.|-
T Consensus 612 -----~~~tSF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~V---ERGsriVt~vp~~~~vVL 681 (928)
T PF04762_consen 612 -----SNCTSFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRV---ERGSRIVTAVPSDTSVVL 681 (928)
T ss_pred -----cCCceEEE--EcCEEEEEecCceEEEEECcCchhhcccccCccccccccccccC---ccCCEEEEEeCCCceEEE
Confidence 13566666 344444 4666778888887 11111111111 11122322 367788887766566778
Q ss_pred ECCCCceE
Q 001358 1006 EASNLEVQ 1013 (1092)
Q Consensus 1006 d~~~~~~~ 1013 (1092)
.++.|.+.
T Consensus 682 QmPRGNLE 689 (928)
T PF04762_consen 682 QMPRGNLE 689 (928)
T ss_pred EcCCCchh
Confidence 89988775
No 235
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.53 E-value=1.4e-12 Score=128.09 Aligned_cols=205 Identities=14% Similarity=0.137 Sum_probs=163.1
Q ss_pred CCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCC---ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC-C
Q 001358 801 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMT---FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-S 875 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~---~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~ 875 (1092)
...+|+|.+|++|+..+|++.. ..+.||.... .+..+++..|...|+.+.|+| ..+.|++++.|..-++|... .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence 3568999999999999999975 6899998764 457889999999999999999 88899999999999999984 3
Q ss_pred c--eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001358 876 S--EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 876 ~--~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
+ ++.-.+..|...++++.|+|.++.+|+||..+.|.||=++... ...+-+..... ....|.+++|.|++-+|++
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN--dWWVsKhikkP--irStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN--DWWVSKHIKKP--IRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc--ceehhhhhCCc--cccceeeeeccCCcceecc
Confidence 3 4455566699999999999999999999999999999887632 11111111111 1136999999999999999
Q ss_pred -EeCCcEEEEEcC-----C-------------ceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001358 954 -VHETHLAIYEAE-----E-------------LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 954 -~~d~~v~lwd~~-----~-------------~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~ 1011 (1092)
+.|+..+|+..- . |+.+.++ ....+.|..+.|||+|..|+-.+.|+++.+=|.....
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 579988888641 1 1222221 1347889999999999999999999999999988775
No 236
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.8e-11 Score=129.77 Aligned_cols=286 Identities=11% Similarity=0.115 Sum_probs=188.5
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE-
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~- 414 (1092)
.....++|++|+ ++|.+. +..++|++..++..+.+ -....+.++.|||-|.+|.+-
T Consensus 36 ~~~v~~~S~~G~-lfA~~~-~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T~e 92 (566)
T KOG2315|consen 36 PCNVFAYSNNGR-LFAYSD-NQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLTWE 92 (566)
T ss_pred cceeEEEcCCCc-EEEEEc-CCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccccc
Confidence 477889999998 677754 47899999998864432 122378899999999999873
Q ss_pred ----eCC-----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001358 415 ----YSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 415 ----~~d-----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
..+ ..+.+|+++++.... .+......-++..|+.|.. ++.=-..+.+.+|+...-+... -.-|.
T Consensus 93 ~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl~~ 165 (566)
T KOG2315|consen 93 PWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKLSV 165 (566)
T ss_pred ccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eeeec
Confidence 122 347899999954322 1222222226899999987 4433345679999987643322 12367
Q ss_pred cceEEEeecccCCccEEEE-----EecCCeEEEEEcCCCCceEEe---cCCCCceEEEEEecCCCEEEEEe-cCC-----
Q 001358 486 APVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAYSANGRRLFSCG-TSK----- 551 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~s~dg~~l~~~~-~~~----- 551 (1092)
..|+.+.+++.+.-..+++ .+.-+.+++|........... ......-..+.|++-|.-|++.. .+-
T Consensus 166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~ 245 (566)
T KOG2315|consen 166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA 245 (566)
T ss_pred cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc
Confidence 7888888888765556654 355567999977632221111 11112234577888777544332 211
Q ss_pred --CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE--EeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358 552 --EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 552 --~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
-++..+++.+.........+.. .++|.++.|+|++..+++ |-.-..+.|+|++ +..+..+.. ..-++
T Consensus 246 SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN~ 316 (566)
T KOG2315|consen 246 SYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRNT 316 (566)
T ss_pred cccccceEEEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCccc
Confidence 2456788888874444333332 489999999999987765 5577889999985 455555532 23478
Q ss_pred EEEccCCCEEEEEeCC---CeEEEEECCCCCeeeec
Q 001358 628 ICFNKNGTLLAVIANE---NRIKILETPESNSVDAA 660 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~ 660 (1092)
+-|+|.|++++.++.+ |.|.+||+.+.+.+..+
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 9999999999998874 88999999886655444
No 237
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.53 E-value=6.6e-12 Score=131.11 Aligned_cols=282 Identities=13% Similarity=0.101 Sum_probs=190.7
Q ss_pred CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE
Q 001358 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
.-++..+.|||.|+ +|++... ..|.+|.-..+..+..+ ....|..+.|||.++||.+
T Consensus 32 ~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~~---------------------~~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 32 NWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVRF---------------------RHPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred CcchhheeecCcch-heehhhc-cceEEccccchhheeee---------------------ecCCceecccCcccceeee
Confidence 34788999999998 5666544 56999998887655431 2357999999999999999
Q ss_pred EeCCC---------------EEEEEEccCCCCccceEEecccccc--ee-EEEeeCCCCcEEEEEEeCCCcEEEEECCCC
Q 001358 414 AYSKH---------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 414 ~~~d~---------------~i~iwd~~~~~~~~~~~~l~~h~~~--v~-~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
-+..+ .+.+||..+|..+. .+.+...+ .+ -+.|+-|.+ +++-. ....+.|+++ ++
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t~ 161 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-TD 161 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-CC
Confidence 75443 38999999987655 44444444 55 678999988 33333 2346999997 44
Q ss_pred cee-EEEecC-CcceEEEeecccCCccEEEE-----EecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEe
Q 001358 476 SRT-YSFEGH-GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 476 ~~~-~~~~~~-~~~v~~i~~~~~~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
... ..+..- ...|....++|..++..|+. ...++++++|.+.....+.........-..+.|.+.|++|++-.
T Consensus 162 n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~ 241 (561)
T COG5354 162 NIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLV 241 (561)
T ss_pred ccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEE
Confidence 322 112111 24566777777766666554 45678899999886665554444333445678899999876543
Q ss_pred cC-------CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE--eCCCeEEEEECCCCceEEEEeCC
Q 001358 549 TS-------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 549 ~~-------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
.. .-++..++++++....+.... ... ++|...+|.|.++.+++. -.+..+.++|++.. ....+...
T Consensus 242 ~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~ 316 (561)
T COG5354 242 MTHTKSNKSYFGESNLYLLRITERSIPVEK-DLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ 316 (561)
T ss_pred EEeeecccceeccceEEEEeecccccceec-ccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc
Confidence 21 123466888888744332222 333 799999999999887664 47888999999765 44443322
Q ss_pred CCCCCCceEEEccCCCEEEEEeCC---CeEEEEECCCC
Q 001358 620 GGLPENPRICFNKNGTLLAVIANE---NRIKILETPES 654 (1092)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iw~~~~~ 654 (1092)
. -+.+.|+|.++++++++-| |.+.+|+....
T Consensus 317 ~----rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 317 K----RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred c----cccccccCcccEEEEecCCccccceEEeccCCc
Confidence 2 3678999999999998765 67888876643
No 238
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.5e-12 Score=146.73 Aligned_cols=238 Identities=16% Similarity=0.125 Sum_probs=157.7
Q ss_pred CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC---CCEEEEEEccCCCCccc
Q 001358 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 433 (1092)
Q Consensus 357 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 433 (1092)
..|.+||...+.... +..+...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-- 241 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-- 241 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence 468899986554332 4557788999999999999998864 347999999887532
Q ss_pred eEEecccccceeEEEeeCCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe-cCCe
Q 001358 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGK 510 (1092)
Q Consensus 434 ~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~ 510 (1092)
.+..+.+...+.+|+|||+. ++++.+.++ .|++||+.+++.. .+..+.......+| ++||+.|+..+ .+|.
T Consensus 242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~--spDG~~l~f~sd~~g~ 315 (433)
T PRK04922 242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTW--APDGKSIYFTSDRGGR 315 (433)
T ss_pred --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEE--CCCCCEEEEEECCCCC
Confidence 23344455668899999995 334555555 5999999888754 45555555556677 45777777665 4455
Q ss_pred --EEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358 511 --IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 511 --i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
|.++++.+++.. .+..........+|+|||++++..... .+...|++||+.+++......+ .......|+|
T Consensus 316 ~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~~Lt~~-----~~~~~p~~sp 388 (433)
T PRK04922 316 PQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVRTLTPG-----SLDESPSFAP 388 (433)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeEECCCC-----CCCCCceECC
Confidence 555566554432 222333344568999999999887642 2345799999988876532222 2334568999
Q ss_pred CCCEEEEEeC---CCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358 589 AKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 589 ~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
||++++..+. .+.+.+++... .....+..+. ..+...+|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 9999887664 34688888854 4444444332 2356667776
No 239
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.6e-12 Score=148.27 Aligned_cols=233 Identities=15% Similarity=0.132 Sum_probs=153.0
Q ss_pred ccCCCcceeEecccCCCCceEEeecCCCceEEEEEcC---cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCC
Q 001358 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1092)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~---d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h 395 (1092)
+.+......+.+..|...+.+.+|||||++ |+..+. +..|.+||+.+++... +..+
T Consensus 188 i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~ 246 (433)
T PRK04922 188 VADSDGYNPQTILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQREL--------------------VASF 246 (433)
T ss_pred EECCCCCCceEeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEE--------------------eccC
Confidence 344444555667777778999999999995 454443 3469999998886543 2233
Q ss_pred CCcEEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEe-CCCc--EEE
Q 001358 396 GVSVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKV 469 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~-~d~~--i~v 469 (1092)
.+...+++|||||+.|+.. +.++ .|++||+.+++.. .+..+.......+|+|||++ ++.++ .++. |.+
T Consensus 247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYR 320 (433)
T ss_pred CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEE
Confidence 4455678999999988754 4444 6999999987632 34456556678899999994 55444 4444 677
Q ss_pred EECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEE
Q 001358 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
+|+.+++... +..+.......+| ++||+.|+..+.++ .|.+||+.++... .+. +........|+|||++++.
T Consensus 321 ~dl~~g~~~~-lt~~g~~~~~~~~--SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~ 395 (433)
T PRK04922 321 VAASGGSAER-LTFQGNYNARASV--SPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLY 395 (433)
T ss_pred EECCCCCeEE-eecCCCCccCEEE--CCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEE
Confidence 7777776433 3223333445666 45777887665443 5899998776654 332 2223456789999999988
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
.+.. .+...|++++...+ ..+.+..+. +.+...+|+|
T Consensus 396 ~s~~-~g~~~L~~~~~~g~-~~~~l~~~~---g~~~~p~wsp 432 (433)
T PRK04922 396 ATRE-GGRGVLAAVSTDGR-VRQRLVSAD---GEVREPAWSP 432 (433)
T ss_pred EEec-CCceEEEEEECCCC-ceEEcccCC---CCCCCCccCC
Confidence 7754 34667999998544 444454433 4556666765
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.7e-12 Score=145.83 Aligned_cols=223 Identities=14% Similarity=0.112 Sum_probs=146.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 468 (1092)
+..+...+.+.+|||||+.||..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44577889999999999999987643 469999999886432 3334455678999999995 334667787766
Q ss_pred EEE--CCCCceeEEEecCCcceEEEeecccCCccEEEEEec-CCeEEEEEcC--CCCceEEecCCCCceEEEEEecCCCE
Q 001358 469 VWD--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVDYDAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 469 vwd--~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~vwd~~--~~~~~~~~~~~~~~i~~~~~s~dg~~ 543 (1092)
||. ..++. ...+..+........| ++||+.|+..+. +|...+|.++ .+.. ..+...........|+|||++
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~w--SpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFF--SPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKL 341 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEE--cCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCE
Confidence 665 44444 4555555555566677 457777765554 5667777654 3322 222222333446789999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceEEEEeCCC
Q 001358 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~ 620 (1092)
++..+..+ +...|++||..+++......+ .......|+||++.|+.++.++ .+.+.+. ++.....+..+.
T Consensus 342 Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~ 414 (427)
T PRK02889 342 LAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG 414 (427)
T ss_pred EEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence 99776432 245799999998876543322 2235678999999998876444 3555566 455555554332
Q ss_pred CCCCCceEEEcc
Q 001358 621 GLPENPRICFNK 632 (1092)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1092)
+ .+...+|+|
T Consensus 415 g--~~~~p~wsp 424 (427)
T PRK02889 415 G--DVREPSWGP 424 (427)
T ss_pred C--CCCCCccCC
Confidence 2 356677776
No 241
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.4e-12 Score=146.29 Aligned_cols=234 Identities=20% Similarity=0.197 Sum_probs=150.1
Q ss_pred cCCCcceeEecccCCCCceEEeecCCCceEEEEEcCc--CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC
Q 001358 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d--~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
.+......+.+..+.+.+.+.+|||||+.++.+...+ ..|.+||+.+|+... +....+
T Consensus 181 ~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g 240 (427)
T PRK02889 181 SDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKG 240 (427)
T ss_pred ECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCC
Confidence 3334444556667778999999999998644433222 459999999887543 222345
Q ss_pred cEEEEEECCCCCEEEE-EeCCCEEEEEE--ccCCCCccceEEecccccceeEEEeeCCCCcEEEE-EEeCCCcEEEEE--
Q 001358 398 SVNRVVWSPDGSLLGV-AYSKHIVQLYA--YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVI-TCGDDKTIKVWD-- 471 (1092)
Q Consensus 398 ~V~~l~~spdg~~las-~~~d~~i~iwd--~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~-s~~~d~~i~vwd-- 471 (1092)
.+.+.+|||||+.|+. .+.++...||. +.++. .+ .+..+.+.+....|+|||+. ++ ++..++...||.
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~--l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS--IYFTSDRGGAPQIYRMP 314 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE--EEEEecCCCCcEEEEEE
Confidence 5678999999999875 56677666665 44443 22 34556666678899999995 44 333456666665
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEe
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
+.+++.. .+..+........| ++||++|+..+.++ .|.+||+.++....... ........|+|||+.|+..+
T Consensus 315 ~~~g~~~-~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 315 ASGGAAQ-RVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred CCCCceE-EEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEE
Confidence 4455432 22222222334556 55778888776654 59999998776543322 22346789999999999887
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001358 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
..+ +...+++.+. +|...+.+..+. +.+...+|+|-
T Consensus 390 ~~~-g~~~l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp~ 425 (427)
T PRK02889 390 QQG-GRSVLAAVSS-DGRIKQRLSVQG---GDVREPSWGPF 425 (427)
T ss_pred ecC-CCEEEEEEEC-CCCceEEeecCC---CCCCCCccCCC
Confidence 643 3566777777 455555555444 55666777763
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=3.2e-10 Score=125.01 Aligned_cols=210 Identities=14% Similarity=0.208 Sum_probs=137.4
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEEcCC-ceeeEE---e----------cCCCCCeEEEEEcCCCCCEEEEEeC-CC
Q 001358 804 AVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---I----------MPPSPTATSLAFNPHDNNVIAIGMD-DS 866 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~s~~d~~~lasg~~-dg 866 (1092)
....++++|++++|+++. +|.+.++++.. +..... + +.......++.++| +++++++... ..
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 345678888888888886 58888888875 333222 1 11234678999999 8887776543 34
Q ss_pred eEEEEEcCCce--e--eEeec-cccCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcC--CCceeeeeeeecCCCCcCCCCC
Q 001358 867 TILIYNARSSE--V--ISKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPS 938 (1092)
Q Consensus 867 ~v~iwd~~~~~--~--~~~l~-~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 938 (1092)
.|++|++.... . ...+. ......+.++|+||++++.... .+++|.++++. .+.......+............
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999997654 2 12222 2445688999999999886655 57889999998 5544444444443222211125
Q ss_pred ceEEEEecCCCEEEEE--eCCcEEEEEcC--Ccee--eeeeccCCCcCEEEEEEecCCCEEEEEe-CCCcEEEEEC--CC
Q 001358 939 ETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SN 1009 (1092)
Q Consensus 939 v~~l~~s~dg~~la~~--~d~~v~lwd~~--~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~s-~Dg~i~vwd~--~~ 1009 (1092)
...++++|||++|.++ ..+.|.+|++. ++.. +.. ..........++|+|||++|+++. .++.|.+|++ .+
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~-~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT-VPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE-EEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE-EeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 7899999999999986 45689999993 3332 222 222244589999999999999887 4568999976 56
Q ss_pred CceEEe
Q 001358 1010 LEVQCR 1015 (1092)
Q Consensus 1010 ~~~~~~ 1015 (1092)
|.+...
T Consensus 326 G~l~~~ 331 (345)
T PF10282_consen 326 GKLTPV 331 (345)
T ss_dssp TEEEEE
T ss_pred CcEEEe
Confidence 666533
No 243
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.49 E-value=8.6e-11 Score=122.94 Aligned_cols=358 Identities=12% Similarity=0.151 Sum_probs=227.1
Q ss_pred EEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001358 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1092)
.+|...+......+....-++..+++||.|++|++.... .|.+|+...+..+..+.. ..|..+.|+|.++
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-----~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~k 84 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-----GVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEK 84 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-----ceEEccccchhheeeeec-----CCceecccCcccc
Confidence 345444444444455456688899999999999987643 399999887776555554 4699999999999
Q ss_pred EEEEEeCCC---------------eEEEEECCCCceEEEEeCCCCCCCCc-eEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 001358 592 QILAAGDDH---------------VIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 592 ~l~~~s~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
+|.+-+..+ .+.+||..+|..+..+.......... -+.|+.+.+++|-. ....+.|+++ ++.
T Consensus 85 YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n 162 (561)
T COG5354 85 YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDN 162 (561)
T ss_pred eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCc
Confidence 999865333 49999999999999887664432233 68889888877655 3357888886 221
Q ss_pred eee-eccc-ccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccc
Q 001358 656 SVD-AAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 733 (1092)
Q Consensus 656 ~~~-~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 733 (1092)
... .+.. ....
T Consensus 163 ~~~~p~~~lr~~g------------------------------------------------------------------- 175 (561)
T COG5354 163 IEEHPFKNLRPVG------------------------------------------------------------------- 175 (561)
T ss_pred cccCchhhccccc-------------------------------------------------------------------
Confidence 110 0000 0122
Q ss_pred cccEEEEEEecCCc--EEEE-----eecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001358 734 ANKISRLTYNNGGQ--AIFA-----LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1092)
Q Consensus 734 ~~~i~~l~~s~~g~--~l~~-----~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~ 806 (1092)
|....++|.|. .|+. .+..+++++|.++.++. +.+..+ ....-.
T Consensus 176 ---i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~----------------------l~tk~l----fk~~~~ 226 (561)
T COG5354 176 ---ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV----------------------LVTKNL----FKVSGV 226 (561)
T ss_pred ---eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe----------------------eeeeee----Eeeccc
Confidence 22333333221 1111 12345566666553321 111111 011112
Q ss_pred EEEEecCCCEEEEEe------------CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEE--EeCCCeEEEEE
Q 001358 807 CFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI--GMDDSTILIYN 872 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las--g~~dg~v~iwd 872 (1092)
.+-|.+.|+++++-- +..++|+++..... .....-.++|...+|.| .++.+++ |..+-.+-++|
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecc-cCCceeEEecccccceeecc
Confidence 345556666554321 24588888874333 33335678999999999 5554444 35778999999
Q ss_pred cCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC
Q 001358 873 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 873 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
++.. ++..+ ...+=..+.|||.+++++.++-| |.|-+||..+.- .++....+. ..+-+.|||||.
T Consensus 305 lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~-----n~s~~~wspd~q 372 (561)
T COG5354 305 LRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGL-----NTSYCDWSPDGQ 372 (561)
T ss_pred cccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecC-----CceEeeccCCce
Confidence 9864 44333 33444568999999999998876 569999998743 233233332 346778999999
Q ss_pred EEEEE-------eCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCC
Q 001358 950 RFLLV-------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus 950 ~la~~-------~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg 1000 (1092)
++.+. .|+.+.|||+...... ..+.+.|.|.|++..+.+.+.
T Consensus 373 F~~~~~ts~k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 373 FYDTDTTSEKLRVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred EEEecCCCcccccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence 98873 3678999998644332 356678999999888887765
No 244
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=2e-12 Score=135.41 Aligned_cols=277 Identities=10% Similarity=0.140 Sum_probs=184.3
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE-----CCCCCE
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-----SPDGSL 410 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~-----spdg~~ 410 (1092)
.+....++-.|++|..--+ ..+.+|+...+..+.. ++.+..+.+ ....|-+| .|+|--
T Consensus 125 ~~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~-------------pi~k~~y~g--t~P~cHdfn~~~a~~~g~d 187 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG--RELYVYSYRGAADLSK-------------PIDKREYKG--TSPTCHDFNSFTATPKGLD 187 (636)
T ss_pred ceeeccccCCCCEEEEecC--CeEEEEEccCcchhcc-------------chhhhcccC--CCCceecccccccCCCCcc
Confidence 4455566666776544322 5688898886544321 112222222 23344444 456778
Q ss_pred EEEEeCCCEEEEEEccCCCCccceEEec--ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce
Q 001358 411 LGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
|..|-.-|.|++.|....+..+ ..... -....|+|+.|-|.+.. .++.+-.+|.++++|.+ +....
T Consensus 188 llIGf~tGqvq~idp~~~~~sk-lfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~~ 255 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSK-LFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCGA 255 (636)
T ss_pred eEEeeccCceEEecchhhHHHH-hhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------ccccC
Confidence 8888888999999877632211 11111 12368999999998877 56667779999999851 11112
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001358 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
+.-++..-+++..+.....-+. .+..++..+......|...+|+|||++|++.+. |+.++|+|..+.+++
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELL 325 (636)
T ss_pred CCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHH
Confidence 2222222233333332211110 111334444445558899999999999999986 788999999999988
Q ss_pred EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc----------------
Q 001358 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---------------- 632 (1092)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---------------- 632 (1092)
..++..- +...|++|+|||++|++|++|.-|.||.+..++.+..=. +|.+.|..|+|.|
T Consensus 326 g~mkSYF---GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHkSWVs~VaFDpytt~~ee~~~~~~~~~ 400 (636)
T KOG2394|consen 326 GVMKSYF---GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHKSWVSVVAFDPYTTSTEEWNNFSGMDS 400 (636)
T ss_pred HHHHhhc---cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc--ccccceeeEeecccccccccccccccccc
Confidence 8877776 789999999999999999999999999999988887755 4466889999883
Q ss_pred -------------------CC-------------CEEEEEeCCCeEEEEECCCCCe
Q 001358 633 -------------------NG-------------TLLAVIANENRIKILETPESNS 656 (1092)
Q Consensus 633 -------------------~~-------------~~l~~~~~dg~i~iw~~~~~~~ 656 (1092)
++ -.+.+.+.|..+.+||+.....
T Consensus 401 ~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 401 TFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred cccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 01 2466778899999999986643
No 245
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=4.7e-12 Score=128.01 Aligned_cols=272 Identities=14% Similarity=0.131 Sum_probs=194.6
Q ss_pred CCCceEEeecCCCceEEEEE-cCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358 334 SSSPMSMDFHPVQHTLLLVG-TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg-~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
.+.|+.++|--|++.=+..+ +.|..+............. +||+.. ......+|..++.. | ..|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~-d-g~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA-D-GTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc-C-CEEE
Confidence 45788888877765433333 3566677777666554432 233222 23345667666665 3 3566
Q ss_pred EEeCCCEEEEEEccCCCCc-cceEEecccccceeEEEeeCCCCcEEEEEEeCC--CcEEEEECCCCceeEEEecC-----
Q 001358 413 VAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGH----- 484 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d--~~i~vwd~~~~~~~~~~~~~----- 484 (1092)
+|-.+|.+.+|..+.+..- .....+..+ ..+..+.-++.... ++++||.. ..+.|||+++.+.+.+-+.-
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 7778899999999854311 111123333 45677777777665 67779988 88999999988665443221
Q ss_pred ----CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358 485 ----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 485 ----~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.-+++++.|.+..+...|++++.-+.+++||.+.++. +..+.....+++++...|+|++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1245566776654478999999999999999987654 5577888889999999999999999865 556999
Q ss_pred EeCCCCeEEEE-EeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358 560 WNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 560 wd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
+|.+++..... +.+.. +.+.++..+|..+++++++-|..+||+|+.+.+++...-... ..+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 99999998877 77777 899999999999999999999999999999977766554332 245555544
No 246
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=7.2e-12 Score=143.26 Aligned_cols=233 Identities=15% Similarity=0.101 Sum_probs=153.8
Q ss_pred cCCCcceeEecccCCCCceEEeecCCCceEEEEEc--CcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC
Q 001358 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
.+......+.+..|...+.+.+|||||++++.+.. .+..|.+||+.+|+... +..+.+
T Consensus 187 ~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g 246 (435)
T PRK05137 187 MDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPG 246 (435)
T ss_pred ECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCC
Confidence 34444555677788889999999999996444432 24689999999886543 344566
Q ss_pred cEEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEe-CC--CcEEEEE
Q 001358 398 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DD--KTIKVWD 471 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~-~d--~~i~vwd 471 (1092)
.+.+.+|||||+.|+.. +.++ .|.+||+.+++.. .+..+.......+|+|||+. ++..+ .+ ..|.+||
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMN 320 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEE
Confidence 77889999999988754 4444 4788898887532 35556666788999999995 44444 33 3688889
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEe
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
+.+++. +.+..+...+....| ++||+.|+..+.+ ..|.+||+...... .+.. ...+..+.|+|||+.|+..+
T Consensus 321 ~~g~~~-~~lt~~~~~~~~~~~--SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 321 ADGSNP-RRISFGGGRYSTPVW--SPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred CCCCCe-EEeecCCCcccCeEE--CCCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCCEEEEEE
Confidence 776654 344334445556667 4577788776543 35778887554432 2222 23467789999999998776
Q ss_pred cCCCCc--eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358 549 TSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 549 ~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
...... ..++++|+..+.. +.+.. . +.+...+|+|
T Consensus 396 ~~~~~~~~~~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp 432 (435)
T PRK05137 396 QTPGSGGAPKLYTVDLTGRNE-REVPT-P---GDASDPAWSP 432 (435)
T ss_pred ccCCCCCcceEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence 533221 4688889876654 33332 2 3455566665
No 247
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=8e-10 Score=111.99 Aligned_cols=281 Identities=11% Similarity=0.099 Sum_probs=186.0
Q ss_pred ccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC---CeeEEeeecCCccccCcccccccCCccc
Q 001358 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLY 783 (1092)
Q Consensus 707 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~~ 783 (1092)
+..|.+|+++......... .........+-++++|+++.|.++..+ |.+.-|.++.
T Consensus 15 s~gI~v~~ld~~~g~l~~~---~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~------------------ 73 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL---QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP------------------ 73 (346)
T ss_pred CCceEEEEEeCcccccchh---hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC------------------
Confidence 4668888887433221111 112356677889999999999888765 5666666543
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCC-ceeeEE--ecCCCCC----------eEE
Q 001358 784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATS 848 (1092)
Q Consensus 784 ~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~ 848 (1092)
.+|.-........ ...+...++++++|++|+++. .|.|.++-+.. |..... ...|.+. +..
T Consensus 74 --~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 74 --DDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred --CCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 3333222221111 233447899999999999997 48999999865 433221 2223333 788
Q ss_pred EEEcCCCCCEEEEEeCC-CeEEEEEcCCceeeEeec---cccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC--Ccee
Q 001358 849 LAFNPHDNNVIAIGMDD-STILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQ 921 (1092)
Q Consensus 849 l~~s~~d~~~lasg~~d-g~v~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iwd~~~--~~~~ 921 (1092)
..+.| ++++|++.+-. -.|.+|++..|+....-. .-...-+.|+|+|++++.....+ +++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 89999 89888876532 379999999876432211 23456788999999999877664 89999999987 4544
Q ss_pred eeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeC--CcEEEEEcCC--ceee-eeeccCCCcCEEEEEEecCCCEEEEE
Q 001358 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--THLAIYEAEE--LTCL-KQWFPISSVPISQATFSCDCRMVFTS 996 (1092)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d--~~v~lwd~~~--~~~~-~~~~~~h~~~v~~l~fs~dg~~l~t~ 996 (1092)
..+.+.++.....-..+...+.+++||++|.++.. +.|.+|.+.. ++.. ......+........|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 44455444443333356788999999999999744 4688887753 3321 12223345557889999999999998
Q ss_pred eCCC-cEEEEECC--CCceE
Q 001358 997 FVDG-TLSIHEAS--NLEVQ 1013 (1092)
Q Consensus 997 s~Dg-~i~vwd~~--~~~~~ 1013 (1092)
..++ .|.+|..+ +|++-
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 8764 58888665 55544
No 248
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.3e-10 Score=122.58 Aligned_cols=327 Identities=13% Similarity=0.176 Sum_probs=200.6
Q ss_pred ceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-----------CC
Q 001358 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DD 599 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-----------~d 599 (1092)
.-+-+.|||.|.||++-...| |.+|--.+-..++.|.. ..|.-+.|||+.++|++-+ +.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCC
Confidence 345689999999999987533 89998777666666653 4688999999999999955 22
Q ss_pred CeEEEEECCCCceEEEEeCCCC-CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccc
Q 001358 600 HVIKIWDMNKVQLLTTIDAGGG-LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
..++|||+.+|.....+..... ...-.-+.||.|++++|.... .+|.||+...-.++....
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks----------------- 343 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS----------------- 343 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-----------------
Confidence 5799999999999988876322 223346789999999998877 478888766422111100
Q ss_pred ccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCee
Q 001358 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 758 (1092)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 758 (1092)
+ .-..|..+.|+|.+..|+.-...
T Consensus 344 ----------------------l-------------------------------ki~gIr~FswsP~~~llAYwtpe--- 367 (698)
T KOG2314|consen 344 ----------------------L-------------------------------KISGIRDFSWSPTSNLLAYWTPE--- 367 (698)
T ss_pred ----------------------c-------------------------------CCccccCcccCCCcceEEEEccc---
Confidence 0 12234555666665433222111
Q ss_pred EEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEE
Q 001358 759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT 838 (1092)
Q Consensus 759 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~ 838 (1092)
+.. .. .++.+..+.+++.+++
T Consensus 368 ----------------------------~~~-----------~p--------------------arvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 368 ----------------------------TNN-----------IP--------------------ARVTLMEVPSKREIRT 388 (698)
T ss_pred ----------------------------ccC-----------Cc--------------------ceEEEEecCccceeee
Confidence 100 00 1122333333333333
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEE----------eCCCeEEEEEcCCcee-eEeeccccCCeEEEEEcCCCCEEEEEeC-
Q 001358 839 IMPPSPTATSLAFNPHDNNVIAIG----------MDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGG- 906 (1092)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg----------~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~l~s~s~- 906 (1092)
-.-+.-.=..+-|-. .|.+|+.- +.=..+.|+.+..... +..+. -...|...+|-|.|+.+++.+.
T Consensus 389 ~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~ 466 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGN 466 (698)
T ss_pred ccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEcc
Confidence 222221112233433 44444431 1122466666665432 22322 5577889999999998887654
Q ss_pred --CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE----eCCcEEEEEcCCceeeeeeccCCCcC
Q 001358 907 --DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPISSVP 980 (1092)
Q Consensus 907 --Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~----~d~~v~lwd~~~~~~~~~~~~~h~~~ 980 (1092)
-.++.+|.+++.. .....+..+... ....+.|||.|++++++ ..|.+..+|..-..+...-...| ..
T Consensus 467 ~~k~tvsfY~~e~~~-~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~ 539 (698)
T KOG2314|consen 467 TVKNTVSFYAVETNI-KKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FA 539 (698)
T ss_pred ccccceeEEEeecCC-Cchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cc
Confidence 3568999988522 222344444432 36789999999999873 46789999988544433323333 34
Q ss_pred EEEEEEecCCCEEEEEeCC------CcEEEEECCC
Q 001358 981 ISQATFSCDCRMVFTSFVD------GTLSIHEASN 1009 (1092)
Q Consensus 981 v~~l~fs~dg~~l~t~s~D------g~i~vwd~~~ 1009 (1092)
.+.+.|.|.|+|++|+++- ..-++|+...
T Consensus 540 at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 540 ATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred cccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 5678999999999999864 3456666653
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=3.2e-11 Score=127.59 Aligned_cols=284 Identities=16% Similarity=0.184 Sum_probs=190.9
Q ss_pred ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC-cceEEEeecccCCccEEEEEecCCeEEEEEcC
Q 001358 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517 (1092)
Q Consensus 439 ~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~ 517 (1092)
+|...-+.|..+|||++ ++++|...-.|++||+..-... |..|. ..+..+.+. +.|-..++.-..|.+|.+...
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak- 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAK- 123 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEe-ccchhhheEeecCceeeehhh-
Confidence 46777889999999997 7889999999999998765543 32332 223222221 223233444455666554311
Q ss_pred CCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe
Q 001358 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597 (1092)
Q Consensus 518 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 597 (1092)
......... ...-..++++.-..-|++++.. ..|+-+++..|..+..+.... +.++++..++....|++|+
T Consensus 124 -~G~hy~~RI-P~~GRDm~y~~~scDly~~gsg----~evYRlNLEqGrfL~P~~~~~---~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 124 -YGRHYRTRI-PKFGRDMKYHKPSCDLYLVGSG----SEVYRLNLEQGRFLNPFETDS---GELNVVSINEEHGLLACGT 194 (703)
T ss_pred -cCeeeeeec-CcCCccccccCCCccEEEeecC----cceEEEEcccccccccccccc---ccceeeeecCccceEEecc
Confidence 111111111 1122345555444444444432 239999999999999988876 8999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEEeCCCC---------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeec-ccccccc
Q 001358 598 DDHVIKIWDMNKVQLLTTIDAGGG---------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNL 667 (1092)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v 667 (1092)
.+|.|..||.++...+.++....+ .+.|+++.|+.+|-.+++|+.+|.+.|||+...+++... .+..-++
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi 274 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI 274 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence 999999999999887777654322 345899999999999999999999999999988666543 3344556
Q ss_pred eeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCc
Q 001358 668 RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ 747 (1092)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 747 (1092)
..+.|.+. ++.-.+.......++|||-..+.+..... ....+..+++-|++-
T Consensus 275 ~~l~~~~~---------------------~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-------pt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 275 KKLDWQDT---------------------DQQNKVVSMDKRILKIWDECTGKPMASIE-------PTSDLNDFCFVPGSG 326 (703)
T ss_pred eeeccccc---------------------CCCceEEecchHHhhhcccccCCceeecc-------ccCCcCceeeecCCc
Confidence 66666532 22223333344779999977655443221 345588899999999
Q ss_pred EEEEeecCCeeEEeeec
Q 001358 748 AIFALASNGVHLMWRWP 764 (1092)
Q Consensus 748 ~l~~~~~dg~i~lw~~~ 764 (1092)
.++++-.++.+..|=++
T Consensus 327 m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYIP 343 (703)
T ss_pred eEEEecCCCcceeEEcc
Confidence 88888888776665554
No 250
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.42 E-value=1.2e-09 Score=112.96 Aligned_cols=171 Identities=15% Similarity=0.173 Sum_probs=133.0
Q ss_pred CCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCceeeEeeccccCCeEE
Q 001358 813 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTG 891 (1092)
Q Consensus 813 dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1092)
+|.+++..+.|...|.+...+-.++. ++.+.|.-..+.. +++-++.|..|| .+-|||..+++ +.++...-+.|.+
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce-EEEeeCCccceEE
Confidence 78999999999988888766554443 4667788888888 777889999999 99999999876 4556667788999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eC----CcEEEEEcCC
Q 001358 892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE----THLAIYEAEE 966 (1092)
Q Consensus 892 l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d----~~v~lwd~~~ 966 (1092)
+..++||+.++.+-....|.+.|++++..+. +...+ . +-|+.++|+|+++++|-+ .+ ..|++||+.+
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~---idkS~--~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRL---IDKSE--Y---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeE---ecccc--c---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 9999999999999888899999999976322 22211 1 369999999999999986 33 4699999998
Q ss_pred ceeeeeeccCCCcCEEEEEEecCCCEEEEEe
Q 001358 967 LTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 967 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s 997 (1092)
++...... ..+.-.+-+|.|||++|..-+
T Consensus 479 ~Kiy~vTT--~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 479 GKIYDVTT--PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeEEEecC--CcccccCcccCCCCcEEEEEe
Confidence 88766532 233445568999999887655
No 251
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=2.7e-10 Score=121.03 Aligned_cols=333 Identities=14% Similarity=0.165 Sum_probs=209.5
Q ss_pred CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-----eC-----
Q 001358 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-----GD----- 598 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----s~----- 598 (1092)
..++...++|++|++++.+. +..+.|++..++..+.+... ..+..+.|+|.++++.+- ..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~-----~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~ 103 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL-----KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS 103 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc-----ceeeeeeecccccccccccccccccCCCCC
Confidence 34577889999999999886 44588999888864333332 358899999999988762 12
Q ss_pred CCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccc
Q 001358 599 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
.-.+.+|+++++.....+...... -.+..|++|..+.+- -..+.+.+|+..+-+.. ...-+...+..+.++|.+..
T Consensus 104 ~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~ 179 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEP 179 (566)
T ss_pred CCceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCccce-eeeeeccceeeEEecCCCCC
Confidence 235779999996655555443322 257888887764433 23478999998874222 23345666777777765322
Q ss_pred ccccccCCceeecCCCCCCcccceeeccccccceeceeeccCcc---ceecccCCccccccEEEEEEecCCcEEEEeecC
Q 001358 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE---CQSLLLPSKVKANKISRLTYNNGGQAIFALASN 755 (1092)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~---~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 755 (1092)
. .+++ ...-..+.-..+|+|......... +..+ -...=..+.|++-|.-|+.....
T Consensus 180 ~-------~vAv--------yvPe~kGaPa~vri~~~~~~~~~~~~a~ksF------Fkadkvqm~WN~~gt~LLvLast 238 (566)
T KOG2315|consen 180 P-------FVAV--------YVPEKKGAPASVRIYKYPEEGQHQPVANKSF------FKADKVQMKWNKLGTALLVLAST 238 (566)
T ss_pred c-------eEEE--------EccCCCCCCcEEEEeccccccccchhhhccc------cccceeEEEeccCCceEEEEEEE
Confidence 1 1111 001123444678888765221111 1111 11122345677766654433221
Q ss_pred CeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC---CeEEEEEcCC
Q 001358 756 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMT 832 (1092)
Q Consensus 756 g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd---g~i~iwd~~~ 832 (1092)
+++....+ --...++.+.+.. |. -....+. ..++|.++.|+|+|+-++++.+ ..+.|||++
T Consensus 239 ------dVDktn~S----YYGEq~Lyll~t~-g~-s~~V~L~---k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr- 302 (566)
T KOG2315|consen 239 ------DVDKTNAS----YYGEQTLYLLATQ-GE-SVSVPLL---KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR- 302 (566)
T ss_pred ------eecCCCcc----ccccceEEEEEec-Cc-eEEEecC---CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-
Confidence 01110000 0111223333333 22 1222232 5789999999999998888763 779999986
Q ss_pred ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC---CeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeC---
Q 001358 833 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG--- 906 (1092)
Q Consensus 833 ~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~--- 906 (1092)
+..+..+ ..++=.++-|+| .|++|+.++-+ |.+.|||+.+.+++..+..-.. +-+.|+|||.+++|++.
T Consensus 303 ~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPR 377 (566)
T KOG2315|consen 303 GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPR 377 (566)
T ss_pred CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEecccc
Confidence 5555544 456678899999 88888887765 7999999999999998886443 45899999999999875
Q ss_pred ---CCcEEEEEcCC
Q 001358 907 ---DAQIFVWDVDG 917 (1092)
Q Consensus 907 ---Dg~i~iwd~~~ 917 (1092)
|..++||++.+
T Consensus 378 lrvdNg~KiwhytG 391 (566)
T KOG2315|consen 378 LRVDNGIKIWHYTG 391 (566)
T ss_pred EEecCCeEEEEecC
Confidence 67799999987
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=3e-09 Score=113.29 Aligned_cols=205 Identities=11% Similarity=0.094 Sum_probs=131.2
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceee-E
Q 001358 806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI-S 880 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~-~ 880 (1092)
..++++|||+++.+.. +..|.+.|+.+++.+..+.-.. ...-...+. +. ++ +.+.||......+.+ |+.. .
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~-~~-~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DT-FF-MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-Cc-cE-EEeecCceEEEEecCCCceEEe
Confidence 3578889999888775 5789999999999988877533 222233332 22 22 233455444443332 2211 1
Q ss_pred ---eeccccCCe-EEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc---C-CCCCceEEEEecCCCEE
Q 001358 881 ---KLEGHSKRV-TGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM---T-LAPSETHIQFHKDQTRF 951 (1092)
Q Consensus 881 ---~l~~h~~~V-~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~---~-~~~~v~~l~~s~dg~~l 951 (1092)
.+.+-..++ ..-.|++ ||+++..... |+|.+-|+...+......+....... . ..+...-+++++||+.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 111100000 0014456 8888776666 99999998765444333333221110 0 01345569999999988
Q ss_pred EEEe---C--------CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceEEeec
Q 001358 952 LLVH---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 952 a~~~---d--------~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~s-~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
.+.. . +.|.++|..+++.+..+..+ ..+..++|||||+ +|++.. .++.|.+.|+.+++.+.++.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 8731 1 57999999999999987665 4899999999999 777665 57889999999999998874
No 253
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.39 E-value=4.3e-11 Score=118.67 Aligned_cols=155 Identities=12% Similarity=0.185 Sum_probs=109.1
Q ss_pred EEEEEcCCCCCEEEEEeC----------CCeEEEEEcCC-ceeeEeecc-ccCCeEEEEEcCCCCEEEEE--eCCCcEEE
Q 001358 847 TSLAFNPHDNNVIAIGMD----------DSTILIYNARS-SEVISKLEG-HSKRVTGLVFSDALNILVSS--GGDAQIFV 912 (1092)
Q Consensus 847 ~~l~~s~~d~~~lasg~~----------dg~v~iwd~~~-~~~~~~l~~-h~~~V~~l~~spdg~~l~s~--s~Dg~i~i 912 (1092)
..+.|+| .|.+|++-.. -|...||.++. +..+..+.- ..++|.+++|+|+|+.+|.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4577888 6666665433 13455555532 233444432 45679999999999987655 35679999
Q ss_pred EEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe----CCcEEEEEcCCceeeeeeccCCCcCEEEEEEec
Q 001358 913 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEELTCLKQWFPISSVPISQATFSC 988 (1092)
Q Consensus 913 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~----d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~ 988 (1092)
||++.. .+..... ..+..+.|||+|++|+++. .|.+.+||+.+.+.+.... | ..++.++|||
T Consensus 88 yd~~~~------~i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~-~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVKGK------KIFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H-SDATDVEWSP 153 (194)
T ss_pred EcCccc------EeEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c-CcEEEEEEcC
Confidence 999731 2222222 1467899999999999842 4679999999888887632 3 3578999999
Q ss_pred CCCEEEEEeC------CCcEEEEECCCCceEEeec
Q 001358 989 DCRMVFTSFV------DGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 989 dg~~l~t~s~------Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
||+++++++. |+.++||+.. |+++.+..
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999999875 7889999995 66665543
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.39 E-value=1.1e-09 Score=116.65 Aligned_cols=269 Identities=14% Similarity=0.140 Sum_probs=170.7
Q ss_pred CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC----------CCEEEEEEcc
Q 001358 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----------KHIVQLYAYH 426 (1092)
Q Consensus 357 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~----------d~~i~iwd~~ 426 (1092)
++|.+.|..+++.+..... |. ....+ +||||+.|+++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~------------------G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG------------------GF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEEc------------------cC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 8899999999887764221 11 11224 9999999988755 6789999999
Q ss_pred CCCCccceEEecc--c---ccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccE
Q 001358 427 GGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 501 (1092)
Q Consensus 427 ~~~~~~~~~~l~~--h---~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 501 (1092)
+.+.+..+. +.. + ...-..++++|||+++++.--+.+..|-+.|+.+++.+.++....... -. +.++..
T Consensus 86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy---~t~e~~- 159 (352)
T TIGR02658 86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IF---PTANDT- 159 (352)
T ss_pred cCcEEeEEc-cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EE---EecCCc-
Confidence 987765332 111 1 122347899999995333333458999999999999999887532111 11 111211
Q ss_pred EEEEecCCeEEEEEcCCCCceE-----EecCCCCce-EEEEEec-CCCEEEEEecCCCCceeEEEEeCCCC-----eEEE
Q 001358 502 IFSISVDGKIKAWLYDSLGARV-----DYDAPGLGC-TRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEG-----AIKR 569 (1092)
Q Consensus 502 l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~i-~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~-----~~~~ 569 (1092)
...-+.||......++...... .+.....++ ..-.|++ +|+++.... ++.|++.|+... ..+.
T Consensus 160 ~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~ 234 (352)
T TIGR02658 160 FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIE 234 (352)
T ss_pred cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceee
Confidence 2233455555544443322211 111100000 0114456 888887765 367999995433 3333
Q ss_pred EEeecc----ccCCceEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC
Q 001358 570 TYQGLQ----LQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1092)
Q Consensus 570 ~~~~~~----~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1092)
.+.... ...+...-++++++++++++.. ..+.|.++|..+++.+..+.... .+..++++||++
T Consensus 235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgk 311 (352)
T TIGR02658 235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAK 311 (352)
T ss_pred eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCC
Confidence 322111 1123344599999999998843 22579999999999999988643 478999999999
Q ss_pred -EEEEEe-CCCeEEEEECCCCCeeeec
Q 001358 636 -LLAVIA-NENRIKILETPESNSVDAA 660 (1092)
Q Consensus 636 -~l~~~~-~dg~i~iw~~~~~~~~~~~ 660 (1092)
+|++.. .++.|.++|..+++.+..+
T Consensus 312 p~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 312 PLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred eEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 777666 5788999999999888776
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.2e-10 Score=131.41 Aligned_cols=237 Identities=11% Similarity=0.037 Sum_probs=147.1
Q ss_pred cceeEecccCCCCceEEeecCCCce--EEEEEcCc--CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcE
Q 001358 324 KTVAQTLIEGSSSPMSMDFHPVQHT--LLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~--llasg~~d--~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
....+.|..+...+..-+|||||+. ++.+...+ ..|.+.++.+|+... +....+..
T Consensus 174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~ 233 (428)
T PRK01029 174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQ 233 (428)
T ss_pred CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCc
Confidence 3334556555567788899999975 22344444 358888988886554 22234455
Q ss_pred EEEEECCCCCEEEEEeC-----CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEE-EeCCCcEEEE--E
Q 001358 400 NRVVWSPDGSLLGVAYS-----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVW--D 471 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~-----d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s-~~~d~~i~vw--d 471 (1092)
...+|||||+.||..+. +-.+.+|++.++..-.......++.+.....+|+|||+. |+. ...++...+| +
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~--Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR--LVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE--EEEEECCCCCceEEEEE
Confidence 67899999999997653 223455777653211111112223334567899999995 443 3346655555 4
Q ss_pred CCC-CceeEEEecCCcceEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEE
Q 001358 472 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 472 ~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
+.. +.....+..+...+....| ++||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+..
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~w--SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAW--SPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYS 388 (428)
T ss_pred CcccccceEEeccCCCCccceeE--CCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEE
Confidence 432 3334555555555666677 4577777766543 368999998876544332 23456778999999998876
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC
Q 001358 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1092)
... .+...|+++|+.+++......+ . +.+...+|+|-.
T Consensus 389 ~~~-~g~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 389 AGN-SNESELYLISLITKKTRKIVIG-S---GEKRFPSWGAFP 426 (428)
T ss_pred ECC-CCCceEEEEECCCCCEEEeecC-C---CcccCceecCCC
Confidence 543 3467799999988876554432 2 445667777753
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.38 E-value=6.3e-11 Score=117.71 Aligned_cols=340 Identities=14% Similarity=0.182 Sum_probs=203.3
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
..++.++|+. +.++....-|..+-+++.+.|.+++||-- +.++.-..+.... ...+.++.+.++...|++|-.+|
T Consensus 15 ~ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 15 ELLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-PSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred hhhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-CCCceEeeeeccceEEEEEEecc
Confidence 3456677777 77888888888899999999999999954 4454444443322 24588999999999999999999
Q ss_pred eEEEEECCCC----CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccC
Q 001358 645 RIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 720 (1092)
Q Consensus 645 ~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~ 720 (1092)
++.-+.+... ...+....|...+..+-++- ....+++.+.|..+ .|.
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~----------------------~~e~V~s~~~dk~~-~~h------ 141 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL----------------------THEWVLSTGKDKQF-AWH------ 141 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC----------------------CceeEEEeccccce-EEE------
Confidence 9998876533 23333445555555554431 12233333332211 010
Q ss_pred ccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCC
Q 001358 721 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 800 (1092)
Q Consensus 721 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 800 (1092)
.+ ..|. .+--|.+..
T Consensus 142 --------------------c~-e~~~---------~lg~Y~~~~----------------------------------- 156 (404)
T KOG1409|consen 142 --------------------CT-ESGN---------RLGGYNFET----------------------------------- 156 (404)
T ss_pred --------------------ee-ccCC---------cccceEeec-----------------------------------
Confidence 00 0000 000000000
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEE--EcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001358 801 SQEAVPCFALSKNDAYLFSAS-GGVISLY--IVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s-dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1092)
...++.+.-. +...|. .|.+.+- .......+.++.+|.+.+++++|.+ ...+|.+|..|..+.+||+...+
T Consensus 157 ---~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 157 ---PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred ---cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCc
Confidence 0000000000 222222 2333322 2234567888999999999999999 88999999999999999998654
Q ss_pred -eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec-----C--------------------CC
Q 001358 878 -VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT-----P--------------------DG 931 (1092)
Q Consensus 878 -~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-----~--------------------~~ 931 (1092)
....+.+|.+.|..+...+--+.|++++.||.|.+|+.+........-+.. . ..
T Consensus 231 g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h 310 (404)
T KOG1409|consen 231 GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQH 310 (404)
T ss_pred ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhh
Confidence 346778999999999998888999999999999999987643222111000 0 00
Q ss_pred Cc-CCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCc-------eeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEE
Q 001358 932 VM-TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL-------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 1003 (1092)
Q Consensus 932 ~~-~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~-------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~ 1003 (1092)
+. ..+..+-..+-+....+...+.+-.+++-|.-.. ..+...-.. ...|+.+.+..+-.+|+|+|.|+.|+
T Consensus 311 ~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~tgItamhlqetlglLvTsG~~Rvi~ 389 (404)
T KOG1409|consen 311 HCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-KTGITAMHLQETLGLLVTSGTDRVIK 389 (404)
T ss_pred hhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc-ccceeEEEhhhhccceeecCCceEEE
Confidence 00 0000111111111222222244444555443211 112221111 45799999999889999999999999
Q ss_pred EEECCCC
Q 001358 1004 IHEASNL 1010 (1092)
Q Consensus 1004 vwd~~~~ 1010 (1092)
|||+..-
T Consensus 390 iwd~~~v 396 (404)
T KOG1409|consen 390 IWDVRSV 396 (404)
T ss_pred EEechhh
Confidence 9998753
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.8e-10 Score=128.39 Aligned_cols=243 Identities=12% Similarity=0.077 Sum_probs=151.6
Q ss_pred CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE---EEeCC--CEEEEEEccCCCCc
Q 001358 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDA 431 (1092)
Q Consensus 357 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la---s~~~d--~~i~iwd~~~~~~~ 431 (1092)
..|.+.|.+.+.... ++.....+.+-+|||||+.++ +...+ ..|.+.++.+|+..
T Consensus 165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~ 224 (428)
T PRK01029 165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK 224 (428)
T ss_pred ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence 367777877665442 444556677889999998633 33333 36888899887643
Q ss_pred cceEEecccccceeEEEeeCCCCcEEEEEEeC----CCcEEEEECCCC---ceeEEEecCCcceEEEeecccCCccEEEE
Q 001358 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFS 504 (1092)
Q Consensus 432 ~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~----d~~i~vwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s 504 (1092)
+ +....+.....+|||||+++ +++... |..+.+|++.++ +..+...++.......+| ++||+.|+.
T Consensus 225 ~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf 297 (428)
T PRK01029 225 K----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVF 297 (428)
T ss_pred E----eecCCCCccceEECCCCCEE-EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEE
Confidence 2 33344455678999999953 333322 333455777653 333333233233455566 557777766
Q ss_pred Ee-cCCeEEEEEc--CC-CCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCc
Q 001358 505 IS-VDGKIKAWLY--DS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 580 (1092)
Q Consensus 505 ~~-~dg~i~vwd~--~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 580 (1092)
.+ .+|...+|.+ +. ......+......+....|+|||+.|+..+.. .+...|++||+.+++......+ . ..
T Consensus 298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~ 372 (428)
T PRK01029 298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---EN 372 (428)
T ss_pred EECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CC
Confidence 55 5676566644 32 22233344444566788999999999887643 2356799999998876544332 2 35
Q ss_pred eEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001358 581 VSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 581 v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
+....|+|||+.|+..+. ...|+++|+.+++........ ..+...+|+|-.
T Consensus 373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 373 KESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGS---GEKRFPSWGAFP 426 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC---CcccCceecCCC
Confidence 677899999998876442 357889999887765544322 235667888743
No 258
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=4.8e-10 Score=118.34 Aligned_cols=334 Identities=13% Similarity=0.180 Sum_probs=202.0
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC-----------C
Q 001358 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----------K 465 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d-----------~ 465 (1092)
-.-+.+.|||-|.||++--..| |.+|--++-..++ .+ .|.+ |..+.|||..+ +|||-+.. .
T Consensus 211 WTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~---RF-~Hp~-Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 211 WTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ---RF-YHPG-VQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred ceeeeEEecCCceEEEEEeccc-eeeecCccHHHHH---hc-cCCC-ceeeecCCccc--eEEEecCCccccCcccCCCc
Confidence 3456799999999999998887 9999765544333 23 4665 89999999999 78887632 4
Q ss_pred cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEE
Q 001358 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
.++|||+.+|...+.|.... +..-.| .-+.||.|+++++
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~-----------------------~~~~~W------------------P~frWS~DdKy~A 321 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIK-----------------------SPYLKW------------------PIFRWSHDDKYFA 321 (698)
T ss_pred eEEEEEccccchhcceeccC-----------------------CCcccc------------------ceEEeccCCceeE
Confidence 57788888887776664211 111112 1257889999988
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCCC
Q 001358 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~ 620 (1092)
.... ..|.+++..+..++. .....-..|....|+|.++.|+.-+.. ..+.+-.+.+++.+.+.....
T Consensus 322 rm~~-----~sisIyEtpsf~lld---~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn 393 (698)
T KOG2314|consen 322 RMTG-----NSISIYETPSFMLLD---KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN 393 (698)
T ss_pred Eecc-----ceEEEEecCceeeec---ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee
Confidence 7753 348888876644332 222223678888999998777764321 245666666776666655432
Q ss_pred CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccc
Q 001358 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 700 (1092)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 700 (1092)
- .-..+-|-.+|.+|++--.- ....+ ..+..
T Consensus 394 V--sDckLhWQk~gdyLcvkvdR-------~tK~~-------~~g~f--------------------------------- 424 (698)
T KOG2314|consen 394 V--SDCKLHWQKSGDYLCVKVDR-------HTKSK-------VKGQF--------------------------------- 424 (698)
T ss_pred e--eccEEEeccCCcEEEEEEEe-------ecccc-------ccceE---------------------------------
Confidence 1 12346677788888754221 00000 00000
Q ss_pred ceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC---CeeEEeeecCCccccCcccccc
Q 001358 701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTK 777 (1092)
Q Consensus 701 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~lw~~~~~~~~~~~~~~~~ 777 (1092)
..+.|+.+...+. ......-...|-.++|-|.|..+++.+.+ .++.+|.+....
T Consensus 425 -------~n~eIfrireKdI------pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~---------- 481 (698)
T KOG2314|consen 425 -------SNLEIFRIREKDI------PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI---------- 481 (698)
T ss_pred -------eeEEEEEeeccCC------CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC----------
Confidence 1122222221100 00001134567889999999988777654 456666554311
Q ss_pred cCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCCceeeEEecCCCCCeEEEEEcC
Q 001358 778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 853 (1092)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 853 (1092)
+...+...+ .......+.|+|.|++++.+. .|.+.++|+.-..+..+-.......+.+.|.|
T Consensus 482 ----------~~~~lVk~~----dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP 547 (698)
T KOG2314|consen 482 ----------KKPSLVKEL----DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP 547 (698)
T ss_pred ----------Cchhhhhhh----cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECC
Confidence 000111111 234566889999999999885 47899999875344333333345678899999
Q ss_pred CCCCEEEEEeCCC------eEEEEEcC
Q 001358 854 HDNNVIAIGMDDS------TILIYNAR 874 (1092)
Q Consensus 854 ~d~~~lasg~~dg------~v~iwd~~ 874 (1092)
.|+|+++++... --+||++.
T Consensus 548 -tGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 548 -TGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred -CCCEEEEeeehhhhccccceEEEEee
Confidence 899999988644 34555555
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=7.8e-09 Score=114.05 Aligned_cols=249 Identities=15% Similarity=0.212 Sum_probs=160.7
Q ss_pred CCcEEEEEECCCCCEEEEEeC----CCEEEEEEccCC-CCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358 396 GVSVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~----d~~i~iwd~~~~-~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
......++++|++++|.+... ++.|..|++... ..+............-..++++|++++ ++++...+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEE
Confidence 356777999999999999866 568999998874 233333333323345668999999994 34444568999999
Q ss_pred ECCC-CceeEE--EecC-----------CcceEEEeecccCCccEEEEEe-cCCeEEEEEcCCCCc-e---EEe-cCCCC
Q 001358 471 DAVT-GSRTYS--FEGH-----------GAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA-R---VDY-DAPGL 530 (1092)
Q Consensus 471 d~~~-~~~~~~--~~~~-----------~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~-~---~~~-~~~~~ 530 (1092)
++.. |..... ...| .....++.+ +++++++++.. ....|.+|+++.... . ..+ ...+.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9987 443322 1111 223456666 55767776654 345799999987652 1 122 23455
Q ss_pred ceEEEEEecCCCEEEEEecCCCCceeEEEEeCC--CCeE--EEEEeecc---ccCCceEEEEEcCCCCEEEEEe-CCCeE
Q 001358 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG-DDHVI 602 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s-~dg~i 602 (1092)
..+.++|+|+++++++..+ ..+.|.+++.. ++.. +..+.... ........+.++||+++|+++. ..+.|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 7889999999999988764 35567777776 5533 22222211 0112578899999999998865 67789
Q ss_pred EEEECC--CCce--EEEEeCCCCCCCCceEEEccCCCEEEEEeC-CCeEEEEECC
Q 001358 603 KIWDMN--KVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETP 652 (1092)
Q Consensus 603 ~iwd~~--~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~ 652 (1092)
.+|++. ++.+ +..+...+ .....++++|+|++|+++.. ++.|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G--~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGG--KFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESS--SSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCC--CCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999983 3443 33333322 23588999999999998875 6789999764
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.8e-10 Score=132.19 Aligned_cols=229 Identities=13% Similarity=0.093 Sum_probs=144.5
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCc--CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d--~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
...+.+..+.+.+...+|||||++++.+...+ ..|.+||+.+|+... +....+.+...
T Consensus 189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~ 248 (430)
T PRK00178 189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAP 248 (430)
T ss_pred CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCe
Confidence 34455666777899999999999655554333 368999999886543 22233445578
Q ss_pred EECCCCCEEEEE-eCCC--EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC--cEEEEECCCCce
Q 001358 403 VWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSR 477 (1092)
Q Consensus 403 ~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~ 477 (1092)
+|||||++|+.. +.++ .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|.++|+.+++.
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCE
Confidence 999999999854 3444 6888899887532 34455666777899999995 233333333 577888888775
Q ss_pred eEEEecCCcceEEEeecccCCccEEEEEecC-C--eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCc
Q 001358 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
.+ +...........| ++|++.++..+.+ + .|.+||+.++........ .......|+|||+.++..+.. .+.
T Consensus 324 ~~-lt~~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~-~g~ 397 (430)
T PRK00178 324 ER-VTFVGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ-QGR 397 (430)
T ss_pred EE-eecCCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec-CCc
Confidence 43 2211222233455 4566777766543 3 477888887654332221 222356899999999887653 335
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
..+++++...+ ..+.+.... +.+...+|+|
T Consensus 398 ~~l~~~~~~g~-~~~~l~~~~---g~~~~p~ws~ 427 (430)
T PRK00178 398 GVLMLVSINGR-VRLPLPTAQ---GEVREPSWSP 427 (430)
T ss_pred eEEEEEECCCC-ceEECcCCC---CCcCCCccCC
Confidence 67888887543 334444333 4555666665
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1.5e-10 Score=131.84 Aligned_cols=227 Identities=15% Similarity=0.109 Sum_probs=141.1
Q ss_pred eEecccCCCCceEEeecCCCceEEEEEcCcC--cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+.+..+...+.+.+|||||++++.+...++ .|.+||+.+++.... ....+.....+|
T Consensus 210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~w 269 (448)
T PRK04792 210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRF 269 (448)
T ss_pred ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeE
Confidence 4556666778999999999996554443333 588899988865431 112223446899
Q ss_pred CCCCCEEEEE-eCCC--EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC--cEEEEECCCCceeE
Q 001358 405 SPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTY 479 (1092)
Q Consensus 405 spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~ 479 (1092)
||||+.|+.. +.++ .|.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|+.+++...
T Consensus 270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 270 SPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR 344 (448)
T ss_pred CCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE
Confidence 9999988764 4555 4888888876532 34455556778899999995 233333344 46677887776543
Q ss_pred EEecCCcceEEEeecccCCccEEEEEec-CCe--EEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCcee
Q 001358 480 SFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1092)
+..........+| ++||++|+..+. ++. |.++|+.++.... +... .......|+|||+.|+..... .+...
T Consensus 345 -Lt~~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~-~g~~~ 418 (448)
T PRK04792 345 -LTFEGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTY-QGKQV 418 (448)
T ss_pred -EecCCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEec-CCceE
Confidence 2222222334456 456667766554 444 4556766655433 2221 122345799999999877653 34567
Q ss_pred EEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
+++++. +|...+.+.... +.+...+|+|
T Consensus 419 l~~~~~-~G~~~~~l~~~~---g~~~~p~Wsp 446 (448)
T PRK04792 419 LAAVSI-DGRFKARLPAGQ---GEVKSPAWSP 446 (448)
T ss_pred EEEEEC-CCCceEECcCCC---CCcCCCccCC
Confidence 888887 455555565443 4566667776
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=5.1e-10 Score=127.51 Aligned_cols=223 Identities=15% Similarity=0.115 Sum_probs=141.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCc--
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~-- 466 (1092)
+..+...+.+.+|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 44567789999999999999987543 368999998875322 2222334457899999995 3344566664
Q ss_pred EEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe-cCCe--EEEEEcCCCCceEEecCCCCceEEEEEecCCCE
Q 001358 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 543 (1092)
|.+||+.+++.. .+..+.......+|+ +|++.|+..+ .++. |.++|+.+++... +..........+|+|||++
T Consensus 288 Iy~~dl~tg~~~-~lt~~~~~~~~p~wS--pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKALT-RITRHRAIDTEPSWH--PDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCeE-ECccCCCCccceEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCE
Confidence 778898877643 444455555666775 4666666554 3444 5555666554332 2222233345789999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceEEEEeCCC
Q 001358 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DH--VIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg--~i~iwd~~~~~~~~~~~~~~ 620 (1092)
++..+.. .+...|.++|+.+++... +.... ......|+|+++.++..+. ++ .+++++. +|.....+..+.
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence 9887653 234568889998887543 22211 1123479999999877553 33 3677786 455555555432
Q ss_pred CCCCCceEEEcc
Q 001358 621 GLPENPRICFNK 632 (1092)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1092)
..+...+|+|
T Consensus 437 --g~~~~p~Wsp 446 (448)
T PRK04792 437 --GEVKSPAWSP 446 (448)
T ss_pred --CCcCCCccCC
Confidence 2356677776
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=7.9e-10 Score=126.97 Aligned_cols=237 Identities=14% Similarity=0.104 Sum_probs=150.4
Q ss_pred cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCCccce
Q 001358 358 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQ 434 (1092)
Q Consensus 358 ~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~ 434 (1092)
.|.++|.+.+.... +..+...+...+|||||+.|+..+.+ ..|.+||+.+++...
T Consensus 180 ~l~~~d~~g~~~~~--------------------l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-- 237 (430)
T PRK00178 180 TLQRSDYDGARAVT--------------------LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-- 237 (430)
T ss_pred EEEEECCCCCCceE--------------------EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--
Confidence 47788877654332 44577789999999999999887643 469999999875322
Q ss_pred EEecccccceeEEEeeCCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe-cCC--
Q 001358 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDG-- 509 (1092)
Q Consensus 435 ~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg-- 509 (1092)
+....+.+...+|+|||+. ++++.+.++ .|.+||+.+++.. .+..+........|+ +|++.++..+ .+|
T Consensus 238 --l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~ 311 (430)
T PRK00178 238 --ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKP 311 (430)
T ss_pred --ccCCCCCcCCeEECCCCCE-EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEEC--CCCCEEEEEECCCCCc
Confidence 3333445567899999995 333454454 6888899887654 454455555556664 5666665554 344
Q ss_pred eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001358 510 KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 510 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
.|.++++.+++... +...........|+|||+.++...... +...|+++|+.+++....... . ......|+|+
T Consensus 312 ~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg~~~~lt~~-~----~~~~p~~spd 384 (430)
T PRK00178 312 QIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRGSVRILTDT-S----LDESPSVAPN 384 (430)
T ss_pred eEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCCCEEEccCC-C----CCCCceECCC
Confidence 46666776655432 222223334578999999998876432 345699999998875433222 1 1224589999
Q ss_pred CCEEEEEeCC---CeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358 590 KDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 590 ~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
|+.++..+.+ ..+++++... .....+..+. ..+...+|+|
T Consensus 385 g~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~--g~~~~p~ws~ 427 (430)
T PRK00178 385 GTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ--GEVREPSWSP 427 (430)
T ss_pred CCEEEEEEecCCceEEEEEECCC-CceEECcCCC--CCcCCCccCC
Confidence 9999876643 3467777753 3334444322 2355666765
No 264
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=1.7e-10 Score=116.88 Aligned_cols=116 Identities=13% Similarity=0.176 Sum_probs=102.9
Q ss_pred CCeeEEEEecC--CCEEEEEe-CCeEEEEEcCCce-eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001358 803 EAVPCFALSKN--DAYLFSAS-GGVISLYIVMTFK-TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 803 ~~v~~~~~s~d--g~~l~~~s-dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1092)
-.++++.|-+. ...+|++. -+.+++||...++ ++..+.-...+++++...| +++++++|..-|.+..||+++++.
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCcee
Confidence 34567778777 77888887 5999999998764 5677777788999999999 999999999999999999999998
Q ss_pred eEe-eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001358 879 ISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 879 ~~~-l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~ 919 (1092)
... +.+-.+.|+++..+|.+++||++|-|+.|||+|+++..
T Consensus 282 ~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 282 LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 877 88999999999999999999999999999999999844
No 265
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.32 E-value=1.6e-10 Score=114.58 Aligned_cols=164 Identities=18% Similarity=0.321 Sum_probs=114.8
Q ss_pred EEEEEECCCCCEEEEEeC----------CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEE
Q 001358 399 VNRVVWSPDGSLLGVAYS----------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~----------d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 468 (1092)
=..+.|+|+|++|++-.. -+...+|.++..........+. ..++|.+++|+|+|+.+.++.|..++.|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 345889999999887533 1245666664332222221222 34579999999999976666677788999
Q ss_pred EEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEE
Q 001358 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
+||++ ++.+..+. ...++.+.|+ |+|++|++++.+ |.|.+||.++.+.+.... ...+..++|+|||++++
T Consensus 87 lyd~~-~~~i~~~~--~~~~n~i~ws--P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG--TQPRNTISWS--PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCc-ccEeEeec--CCCceEEEEC--CCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEE
Confidence 99986 66676664 5678888885 477899988754 679999999666655543 33578999999999999
Q ss_pred EEecC--CCCceeEEEEeCCCCeEEEEE
Q 001358 546 SCGTS--KEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 546 ~~~~~--~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
++... ...++.+.||+.. |+.+...
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeEec
Confidence 88753 2245668899874 5554443
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=8.9e-09 Score=104.57 Aligned_cols=252 Identities=13% Similarity=0.179 Sum_probs=172.2
Q ss_pred CCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCC--ceee--EEecCCCCCeEEEEEcCCCCCEEEEEeCC-CeEEEE
Q 001358 801 SQEAVPCFALSKNDAYLFSAS----GGVISLYIVMT--FKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDD-STILIY 871 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s----dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~d-g~v~iw 871 (1092)
....++-++++|+++.|.++. +|.|..|.+.. |+.. ........+-+.+++++ ++++|+++... |.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 566778899999999888874 36788887764 4432 22222233448899999 89898888754 699999
Q ss_pred EcCC-ceee--EeeccccCC----------eEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001358 872 NARS-SEVI--SKLEGHSKR----------VTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1092)
Q Consensus 872 d~~~-~~~~--~~l~~h~~~----------V~~l~~spdg~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1092)
.+.. |.+. .....|.+. +....|.|++++|++.+ .|+ |.+|+++.+............|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9965 4322 122236555 88899999999999875 455 9999999877555444444333
Q ss_pred CCceEEEEecCCCEEEEE--eCCcEEEEEcCCc--ee--eeee---ccC--CCcCEEEEEEecCCCEEEEEeC-CCcEEE
Q 001358 937 PSETHIQFHKDQTRFLLV--HETHLAIYEAEEL--TC--LKQW---FPI--SSVPISQATFSCDCRMVFTSFV-DGTLSI 1004 (1092)
Q Consensus 937 ~~v~~l~~s~dg~~la~~--~d~~v~lwd~~~~--~~--~~~~---~~~--h~~~v~~l~fs~dg~~l~t~s~-Dg~i~v 1004 (1092)
...+.++|+|++++..+. -+++|.+|..... +. ++.. ... -......+..++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 357899999999998774 5689999998763 21 1111 111 1556778999999999997753 246888
Q ss_pred EECCCCce-EEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCC-cEEEEecCCCCCcc
Q 001358 1005 HEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTW 1067 (1092)
Q Consensus 1005 wd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg-~v~~w~~~~~~~~~ 1067 (1092)
+.+....- +.... +.+ .....|..+.++|. +++|+++..++ .|.+|.+....++.
T Consensus 271 f~V~~~~g~L~~~~---~~~----teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 271 FSVDPDGGKLELVG---ITP----TEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred EEEcCCCCEEEEEE---Eec----cCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCceE
Confidence 88765422 22221 112 22355677899984 67777777664 79999998777654
No 267
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=2.5e-10 Score=131.15 Aligned_cols=215 Identities=19% Similarity=0.168 Sum_probs=140.4
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCc--CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d--~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
...+.+..+...+...+|||||++++.+...+ ..|.+||+.+++... +..+...+.++
T Consensus 180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~ 239 (417)
T TIGR02800 180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAP 239 (417)
T ss_pred CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccce
Confidence 34455666776899999999999644443322 479999999886543 22355567789
Q ss_pred EECCCCCEEEEE-eCC--CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEe-CCC--cEEEEECCCCc
Q 001358 403 VWSPDGSLLGVA-YSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVTGS 476 (1092)
Q Consensus 403 ~~spdg~~las~-~~d--~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~-~d~--~i~vwd~~~~~ 476 (1092)
+|+|||+.|+.. +.+ ..|++||+.++... .+..+........|+|||++ |+..+ .++ .|.++|+.+++
T Consensus 240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred EECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCC
Confidence 999999988754 333 35889999876432 34445555667899999994 44443 333 58888887776
Q ss_pred eeEEEecCCcceEEEeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCC
Q 001358 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
.. .+..+...+....| ++++.+++.++.++ .|.+||+.+..... +... .......|+|||++|+.....+ +
T Consensus 314 ~~-~l~~~~~~~~~~~~--spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~-~ 387 (417)
T TIGR02800 314 VR-RLTFRGGYNASPSW--SPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRG-G 387 (417)
T ss_pred EE-EeecCCCCccCeEE--CCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCC-C
Confidence 43 44445555666667 45677888887765 78888887744332 2222 2234568999999998877543 3
Q ss_pred ceeEEEEeCCCCeEEEEEe
Q 001358 554 ESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~ 572 (1092)
...+++.+.. +.....+.
T Consensus 388 ~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 388 RGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred cEEEEEEECC-CceeeECC
Confidence 4566666643 44444443
No 268
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=5.5e-10 Score=128.37 Aligned_cols=210 Identities=15% Similarity=0.075 Sum_probs=138.5
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC--c
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 466 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~ 466 (1092)
+..+...+...+|||||++||.++.+ ..|++||+.+++.. .+..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44567789999999999999988643 47999999987532 23345566778999999985 334444444 5
Q ss_pred EEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEec-CC--eEEEEEcCCCCceEEecCCCCceEEEEEecCCCE
Q 001358 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 543 (1092)
|++||+.++... .+..+........|+ +|++.|+..+. ++ .|.++++.+.+. ..+...........|+|+|++
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence 889998887643 344444444455664 47777766554 33 477777765543 333334456677899999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceEEEEe
Q 001358 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~ 617 (1092)
++...... +...|++||+.++.... +... .......|+|++++|+..+.++ .+++.+. ++.....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~----~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGERV-LTDT----GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeEE-ccCC----CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence 99887533 35579999998865432 2221 1234558999999998876543 3555554 344444443
No 269
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.30 E-value=6.8e-10 Score=110.35 Aligned_cols=357 Identities=14% Similarity=0.211 Sum_probs=211.9
Q ss_pred ccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc-----eeEEEecCC------------cceEEEeecccCCccEEE
Q 001358 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHG------------APVYSLCPHAKENIHFIF 503 (1092)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~------------~~v~~i~~~~~~~~~~l~ 503 (1092)
..-|.++.|..+|. +|++|..+|.|.++.-+... ....++.|. ..|+.+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45688999999999 89999999999999643322 223344443 357788888888888899
Q ss_pred EEecCCeEEEEEcCCCCceEE-----ecCCCCceEEEEE---ecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001358 504 SISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 504 s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~i~~~~~---s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
..+.|.+|++|.+........ .......++++.. .+-...+. ..+.+.+..
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aN-- 161 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYAN-- 161 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccc--
Confidence 999999999998876544331 1111112222211 11111111 112222221
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eEEEEeCCCC-----CCCCceEEEcc-CCCEEEEEeCCCeEEE
Q 001358 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGG-----LPENPRICFNK-NGTLLAVIANENRIKI 648 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~-----~~~v~~v~~s~-~~~~l~~~~~dg~i~i 648 (1092)
.|...|+++.++.|...++++. |=.|.+|+++--. .......... ...|++..|+| ..++++-.+..|+|++
T Consensus 162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 1247799999999998887764 6779999987432 2222221111 12377888999 4567788888899999
Q ss_pred EECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceeccc
Q 001358 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1092)
Q Consensus 649 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 728 (1092)
-|++....-... -+++..
T Consensus 241 cDmR~~aLCd~h-------------------------------------------------sKlfEe------------- 258 (433)
T KOG1354|consen 241 CDMRQSALCDAH-------------------------------------------------SKLFEE------------- 258 (433)
T ss_pred eechhhhhhcch-------------------------------------------------hhhhcc-------------
Confidence 998743211100 001100
Q ss_pred CCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001358 729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 808 (1092)
Q Consensus 729 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~ 808 (1092)
|. .|..+. ... +--..|..+
T Consensus 259 pe------------dp~~rs------------------------------------------ffs------eiIsSISDv 278 (433)
T KOG1354|consen 259 PE------------DPSSRS------------------------------------------FFS------EIISSISDV 278 (433)
T ss_pred cc------------CCcchh------------------------------------------hHH------HHhhhhhce
Confidence 00 000000 000 123456778
Q ss_pred EEecCCCEEEEEeCCeEEEEEcC-CceeeEEecCCC------------CCe---EEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001358 809 ALSKNDAYLFSASGGVISLYIVM-TFKTILTIMPPS------------PTA---TSLAFNPHDNNVIAIGMDDSTILIYN 872 (1092)
Q Consensus 809 ~~s~dg~~l~~~sdg~i~iwd~~-~~~~~~~~~~~~------------~~i---~~l~~s~~d~~~lasg~~dg~v~iwd 872 (1092)
.|+++|+|+++-+--+|++||+. ..+++.+++-|. ..| ..++|+- ++.+++||+....+++|+
T Consensus 279 KFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 279 KFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEec
Confidence 89999999988877889999983 455555555443 122 4678888 788999999999999999
Q ss_pred cCCceee-EeeccccCC--eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC
Q 001358 873 ARSSEVI-SKLEGHSKR--VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 873 ~~~~~~~-~~l~~h~~~--V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
+..|... .++...... ...+ ..-+.+.+++......+|-.. .. ....+...+|+|...
T Consensus 358 ~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~------------ld----f~kkilh~aWhp~en 418 (433)
T KOG1354|consen 358 LARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA------------LD----FRKKILHTAWHPKEN 418 (433)
T ss_pred CCCCcceeecccccccCCccccc---ccceeeecCCCccccccccch------------hh----hhhHHHhhccCCccc
Confidence 7766432 333322221 1111 112334444443332222110 00 001367789999999
Q ss_pred EEEEEeCCcEEEEE
Q 001358 950 RFLLVHETHLAIYE 963 (1092)
Q Consensus 950 ~la~~~d~~v~lwd 963 (1092)
.+|++.-+.+++|.
T Consensus 419 ~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 419 SIAVAATNNLYIFQ 432 (433)
T ss_pred eeeeeecCceEEec
Confidence 99998777787763
No 270
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=2.4e-10 Score=113.50 Aligned_cols=265 Identities=12% Similarity=0.181 Sum_probs=174.7
Q ss_pred CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecc-cccceeEEeeecCCCCcEEEEEECCCCC--E
Q 001358 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIG-ACSMLFKTALVRDPGVSVNRVVWSPDGS--L 410 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~-~~~~~~~~~~l~~h~~~V~~l~~spdg~--~ 410 (1092)
.+-|.+|.|..+|. +||+|..+|.|.++.-+.... . ++..+-.. .....|....--.-...|..+.|.+++. .
T Consensus 25 adiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~ 100 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-G--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE 100 (433)
T ss_pred hcceeeEEeecccc-eEeecCCCCeEEEeecccccc-c--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence 56899999999999 699999999999997544321 0 11111000 0001111100111246789999999764 4
Q ss_pred EEEEeCCCEEEEEEccCCCCcc------------------c--------------eEE-ecccccceeEEEeeCCCCcEE
Q 001358 411 LGVAYSKHIVQLYAYHGGSDAR------------------Q--------------QLE-IDAHVGNVNDLAFSAPCKQIS 457 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~------------------~--------------~~~-l~~h~~~v~~~~~s~d~~~l~ 457 (1092)
++..+.|.+|++|.+....... . ... -.+|+.-|.++.++.|+. .
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E--t 178 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE--T 178 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--e
Confidence 5666789999999986432111 0 001 135788899999999998 5
Q ss_pred EEEEeCCCcEEEEECCCCcee---EEEec-----CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc------eE
Q 001358 458 VITCGDDKTIKVWDAVTGSRT---YSFEG-----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA------RV 523 (1092)
Q Consensus 458 l~s~~~d~~i~vwd~~~~~~~---~~~~~-----~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------~~ 523 (1092)
++++. |=.|.+|+++--..- ..++. -...|++..|+|... ..++-.+..|+|++.|++.... ..
T Consensus 179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 66654 788999998743221 22222 234677888888644 5788888999999999984321 11
Q ss_pred EecC----------CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC-CCCeEEEEEeeccc---------cCCce--
Q 001358 524 DYDA----------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAIKRTYQGLQL---------QHNSV-- 581 (1092)
Q Consensus 524 ~~~~----------~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~-~~~~~~~~~~~~~~---------~~~~v-- 581 (1092)
.... .-..|..+.|+++|+++++-. -.+|.+||+ ...+.+.+++.|.. ..+.|
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~Ifd 331 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFD 331 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhh
Confidence 1111 112578899999999999853 456999999 45667777776652 12222
Q ss_pred -EEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001358 582 -SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 582 -~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
..++|+.++.++++|+....+++++...|.
T Consensus 332 KFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 332 KFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 357899999999999999999999966543
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.28 E-value=5.5e-11 Score=118.14 Aligned_cols=357 Identities=14% Similarity=0.139 Sum_probs=226.6
Q ss_pred eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE--EecCCCCceEEEEEecCCCEEEEEecCCCCc
Q 001358 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
.++.++||.+.++.....+..+ -+++.+.|.++|+|--+...+.. .......+++++.+.++.+.|+++-. .
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~----n 89 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD----N 89 (404)
T ss_pred hhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----c
Confidence 4567789999998887766554 59999999999999654433322 22334567899999999999998875 4
Q ss_pred eeEEEEeC----CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358 555 SFLVEWNE----SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 555 ~~i~iwd~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
+.+.-+.. +.....+.+..|. ..+..+-|+-...++++.+.|..+.---.+.+..+........ ..++.+
T Consensus 90 gtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~~ 163 (404)
T KOG1409|consen 90 GTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQF 163 (404)
T ss_pred ceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCce
Confidence 45666544 3445556666666 8899999999899999999988775444455554433222111 111222
Q ss_pred ccCCCEEEEEeCCCeEEEEECC--CCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccc
Q 001358 631 NKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1092)
Q Consensus 631 s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 708 (1092)
.-. +..+|...|.+.+..+. .-..+..+.+|.+.+.++++. +....+.++..|.
T Consensus 164 d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd----------------------~~~~~LfSg~~d~ 219 (404)
T KOG1409|consen 164 DAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD----------------------PGQRLLFSGASDH 219 (404)
T ss_pred eeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc----------------------CCCcEEEeccccC
Confidence 211 55666667777766544 346788899999999999997 5677889999999
Q ss_pred ccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccc-----cCCccc
Q 001358 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK-----VPPRLY 783 (1092)
Q Consensus 709 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~-----~~~~~~ 783 (1092)
.+.+||+........ ...+|...|..+...+--+.+++++.||.|.+|++........+..... ..+..|
T Consensus 220 ~vi~wdigg~~g~~~-----el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffw 294 (404)
T KOG1409|consen 220 SVIMWDIGGRKGTAY-----ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFW 294 (404)
T ss_pred ceEEEeccCCcceee-----eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHH
Confidence 999999875443333 2345888999999888899999999999999999986654333322211 223333
Q ss_pred cCCCCCceeeecCCCC--CC-CCCeeEEEEecCCCEEEEEeCCeEEEEEcC-------CceeeEEecCCCCCeEEEEEcC
Q 001358 784 QPRHGPQFMVNDTTDS--NS-QEAVPCFALSKNDAYLFSASGGVISLYIVM-------TFKTILTIMPPSPTATSLAFNP 853 (1092)
Q Consensus 784 ~~~~~~~~~~~~l~~~--~~-~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~s~ 853 (1092)
+...--.....-+..+ .+ ...+...+-+....+...+.+-.+|+-|.- +...+..+......|+++.+..
T Consensus 295 n~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe 374 (404)
T KOG1409|consen 295 NFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE 374 (404)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh
Confidence 3211000000000000 01 112222222222222233333334444421 1122333433445789999988
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC
Q 001358 854 HDNNVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 854 ~d~~~lasg~~dg~v~iwd~~~ 875 (1092)
.-.+|+|++.|..|+|||+..
T Consensus 375 -tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 375 -TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred -hccceeecCCceEEEEEechh
Confidence 677999999999999999874
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=2.3e-09 Score=115.13 Aligned_cols=194 Identities=12% Similarity=0.179 Sum_probs=155.1
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEee------C------------CCCcEEEEEEeCCCc
Q 001358 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------A------------PCKQISVITCGDDKT 466 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s------~------------d~~~l~l~s~~~d~~ 466 (1092)
.|.+.|+|....||.++|||...++..........-++..++..|. | .+.+..++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 4567899999999999999999987554332222234444555552 1 123337888999999
Q ss_pred EEEEECCCCceeEEEe--cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEE
Q 001358 467 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 544 (1092)
|.+++...|+....+. .|.+.|+++.++. +-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999988885 6899999987643 44689999999999999999988888888888899999999999999
Q ss_pred EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC-----CCEEEEE-eCCCeEEEEECCC
Q 001358 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILAA-GDDHVIKIWDMNK 609 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-s~dg~i~iwd~~~ 609 (1092)
++++. .|.+||+++++.+..|.||. ++|.++.|..+ |.+++++ ..+..+.+|-...
T Consensus 160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98854 59999999999999999999 99999999877 7777774 4556677886554
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=3e-09 Score=114.27 Aligned_cols=188 Identities=14% Similarity=0.229 Sum_probs=147.9
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCceeeEEecCC---CCCeEEEEE------cC-------------CCCCEEEEEeCCCeE
Q 001358 812 KNDAYLFSAS-GGVISLYIVMTFKTILTIMPP---SPTATSLAF------NP-------------HDNNVIAIGMDDSTI 868 (1092)
Q Consensus 812 ~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~------s~-------------~d~~~lasg~~dg~v 868 (1092)
|.+.++|... ||.+++|+...++....+.+. .+..++.+| +| .|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456777775 799999999999887776542 223333333 11 155688889999999
Q ss_pred EEEEcCCceeeEeec--cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEec
Q 001358 869 LIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 946 (1092)
Q Consensus 869 ~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 946 (1092)
.+|+...|+....+. .|.+.|.++.++.+-..|-|++.|+.+..|+..... .+........ .+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence 999999999888886 499999999999999999999999999999999843 3333333333 588999999
Q ss_pred CCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecC-----CCEEEE-EeCCCcEEEEECCC
Q 001358 947 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-----CRMVFT-SFVDGTLSIHEASN 1009 (1092)
Q Consensus 947 dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~d-----g~~l~t-~s~Dg~i~vwd~~~ 1009 (1092)
||+.|+++ .++|++||+++++.+.. +.||.++|.++.|-.+ |.++++ ...+..+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988875 46899999999999987 7899999999999887 666664 44456688887765
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.17 E-value=3.1e-08 Score=111.74 Aligned_cols=183 Identities=13% Similarity=0.070 Sum_probs=111.9
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001358 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 536 (1092)
.++.++.++.|..+|..+|+.+............... ++..++.++.+|.+..+|..+++.......... +.+..
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~p 141 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSPP 141 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecCC
Confidence 5778888999999999999998776544332222222 446788889999999999998888776554332 22111
Q ss_pred EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce-----EEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001358 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
.. .+..++.+.. ++.++.||..+|+.+-.+.... ... ...... +..++.+..+|.+..+|..+|+
T Consensus 142 ~v-~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~---~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 142 LV-ANGLVVVRTN----DGRLTALDAATGERLWTYSRVT---PALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred EE-ECCEEEEECC----CCeEEEEEcCCCceeeEEccCC---CceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence 11 2345555443 5679999999999877665432 111 111111 2467888889999999999998
Q ss_pred eEEEEeCCCCC--CCC---ceEEEcc--CCCEEEEEeCCCeEEEEECCCC
Q 001358 612 LLTTIDAGGGL--PEN---PRICFNK--NGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 612 ~~~~~~~~~~~--~~v---~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.+......... ..+ ..+.-+| .+..+++++.+|.+..||..++
T Consensus 212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 87654322110 000 0000011 2345555666666666666544
No 275
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.17 E-value=1.7e-10 Score=110.61 Aligned_cols=167 Identities=22% Similarity=0.309 Sum_probs=123.1
Q ss_pred chhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---------HHHHHHHhcCcCHHHHHHHhccCCC--cCCccccch
Q 001358 3 KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFD---------MKFFEDMILDGKWEDVEQYLSSFTK--VDDNRYSTK 71 (1092)
Q Consensus 3 ~~~~~~~~li~q~L~~~G~~~s~~~L~~Esg~~~~---------~~~~~~~i~~G~w~~~~~~l~~~~~--~~~~~~~~~ 71 (1092)
..++|+-|||+.||-..||.++|+.+.+|+|+..+ -...|.+|..|+-++|+..+.++-. ++.+. .
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~---~ 100 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR---E 100 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch---h
Confidence 46789999999999999999999999999999761 4778999999999999999988732 33332 3
Q ss_pred hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcc---cCcccccccccccCCChHHHHHHHHHH
Q 001358 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL---DDIRDHELLSKYYGDALSARKNMMLEL 148 (1092)
Q Consensus 72 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~---~~~~~~~~~~~~~~~~~~~R~~l~~~l 148 (1092)
+.|.+.+|+++|++..+...+|++++|++|.|+...+++.++.|...|.. ...++.+...-| ....|.++...+
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~---~~s~R~kvA~~v 177 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELL---SQSLRQKVASEV 177 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHH---HHHHHHHHHHHH
Confidence 88999999999999999999999999999999988777776666665543 222221111101 134476777777
Q ss_pred HhhcccCcccccccCCCCCccHHHHHHHHHHHHHH
Q 001358 149 KQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQ 183 (1092)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q 183 (1092)
+..|-...- .. -..+|..||+.-...|
T Consensus 178 N~aiL~~~~---~~-----~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 178 NSAILASQE---HE-----SEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHHHHhc---cc-----ccchHHHHHHHHHHHH
Confidence 766543221 01 2457888886655555
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.15 E-value=1.1e-07 Score=107.31 Aligned_cols=210 Identities=9% Similarity=0.060 Sum_probs=125.8
Q ss_pred eCCeEEEEEcCCceeeEEecCCCCCe-----EEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccC----C---
Q 001358 821 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----R--- 888 (1092)
Q Consensus 821 sdg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~----~--- 888 (1092)
.++.+..||.++|+.+..+....... .+..+. + ..++.+..+|.+..+|..+|+.+.+...... .
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER 229 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence 35677777777777666554322211 112222 3 3677788899999999999987755431100 0
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcC
Q 001358 889 VTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAE 965 (1092)
Q Consensus 889 V~~l~~sp--dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~ 965 (1092)
+..+.-+| .+..+..++.+|.+..||..+++..-... ... ....+ .++..+.+ ..++.+..+|..
T Consensus 230 ~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~---~~~-------~~~p~--~~~~~vyv~~~~G~l~~~d~~ 297 (377)
T TIGR03300 230 LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD---ASS-------YQGPA--VDDNRLYVTDADGVVVALDRR 297 (377)
T ss_pred hhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec---cCC-------ccCce--EeCCEEEEECCCCeEEEEECC
Confidence 00010011 35577778889999999999886432111 111 11122 23445554 678999999999
Q ss_pred CceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCE
Q 001358 966 ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ 1045 (1092)
Q Consensus 966 ~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~ 1045 (1092)
+|+.+............+... .+..|++++.+|.|+++|..+|+.+.++.... ..+... -++. ++.
T Consensus 298 tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~--------~~~~~s-p~~~---~~~ 363 (377)
T TIGR03300 298 SGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG--------SGIASP-PVVV---GDG 363 (377)
T ss_pred CCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CccccC-CEEE---CCE
Confidence 998765431111112222222 46688899999999999999999998876222 111110 1112 356
Q ss_pred EEEEeCCCcEEEEe
Q 001358 1046 FAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1046 l~~~~~dg~v~~w~ 1059 (1092)
|++++.||.|+.|.
T Consensus 364 l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 364 LLVQTRDGDLYAFR 377 (377)
T ss_pred EEEEeCCceEEEeC
Confidence 99999999998763
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=4.5e-08 Score=109.65 Aligned_cols=205 Identities=14% Similarity=0.023 Sum_probs=129.6
Q ss_pred eEecccCCCCceEEeecCCCceEEEEEcC---cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~---d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.+.+.... .+....|||||+++++..+. +..|.++|+.+|+... +....+.+...+
T Consensus 181 ~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~ 239 (419)
T PRK04043 181 QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSD 239 (419)
T ss_pred eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeE
Confidence 34343333 77889999999864554333 3569999999887654 223445667788
Q ss_pred ECCCCCEEEEEeC---CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC--cEEEEECCCCcee
Q 001358 404 WSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRT 478 (1092)
Q Consensus 404 ~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~ 478 (1092)
|||||+.|+.... +..|.++|+.+++. + .+..+........|+|||+.+++++. ..+ .|.+.|+.+|+..
T Consensus 240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeE
Confidence 9999998876532 34688889887752 2 23334433445689999996444432 233 6888898888764
Q ss_pred EEEecCCcceEEEeecccCCccEEEEEecC---------CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEec
Q 001358 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
+.... ... ...| ++||+.|+..+.. ..|.+.|++++.... +... .......|+|||+.++....
T Consensus 315 rlt~~-g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 315 QVVFH-GKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred eCccC-CCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEc
Confidence 43321 111 1245 5677777766543 257777877765433 3322 23335889999999988765
Q ss_pred CCCCceeEEEEeCCCC
Q 001358 550 SKEGESFLVEWNESEG 565 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~ 565 (1092)
. .+...+.+.++...
T Consensus 388 ~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 388 L-GNQSALGIIRLNYN 402 (419)
T ss_pred c-CCcEEEEEEecCCC
Confidence 4 33556778887544
No 278
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.04 E-value=1.7e-08 Score=98.67 Aligned_cols=251 Identities=15% Similarity=0.098 Sum_probs=161.2
Q ss_pred CceEEeec---CCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC---cEEEEEECCCCC
Q 001358 336 SPMSMDFH---PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGS 409 (1092)
Q Consensus 336 ~V~~v~~s---pdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~ 409 (1092)
.+..+.|. .+|...++-+-.+|.|.++.....+....+. + +..-.- .--++.|++-|.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~-----------~-----ls~~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLR-----------G-----LSSKKISVVEALSLDISTSGT 134 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeec-----------c-----cchhhhhheeeeEEEeeccCc
Confidence 56666665 3454456667777888888765433222100 0 111111 234678999999
Q ss_pred EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC-CCceeEE-EecCCcc
Q 001358 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYS-FEGHGAP 487 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~~~~~-~~~~~~~ 487 (1092)
.++++-.+|.+.+-+..... +....++++|....+-+.|+..... ++.+||.|+.+..||++ .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 99999999988855444322 3333468899999999999877665 79999999999999998 4455543 5678888
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCC--EEEEEecCCCCceeEEEEeCCC-
Q 001358 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR--RLFSCGTSKEGESFLVEWNESE- 564 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~--~l~~~~~~~~~~~~i~iwd~~~- 564 (1092)
|.++.-++. .+.++++|+.|-.|++||.+.......-..-.+.|..+..+|.-. .|++|-.++ ..+.+.+.
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEeccc
Confidence 998876653 668999999999999999997666555555567899999998543 444443322 33444332
Q ss_pred -CeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEE-EEECCCC
Q 001358 565 -GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNKV 610 (1092)
Q Consensus 565 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~-iwd~~~~ 610 (1092)
.+....+..+..|..-.+.-.|......+++++ .|+.++ +|-..++
T Consensus 287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 221122333332225555555544445677755 555544 6654443
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=1.9e-07 Score=116.37 Aligned_cols=260 Identities=12% Similarity=0.090 Sum_probs=162.0
Q ss_pred EEEEEecC-CcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCE
Q 001358 738 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 816 (1092)
Q Consensus 738 ~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~ 816 (1092)
..++++++ +..+++-..++.|.+|+.........+.... .....|. +. ...-.....+++++++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~------~G~~dG~------~~-~a~f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE------EGLRDGS------FE-DATFNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC------cCCCCCc------hh-ccccCCCcEEEEeCCCCE
Confidence 45778764 5566666667888888754321100000000 0000010 00 012234578999999887
Q ss_pred EEEEe--CCeEEEEEcCCceeeEEecCC-----------------CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001358 817 LFSAS--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1092)
Q Consensus 817 l~~~s--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1092)
|.++. ++.|+++|..++. +.++.+. -.....++++|+++.++++.+.++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 77665 4779999987764 3333210 11336799999556677777788999999998775
Q ss_pred eeEeecc---------c------cCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCceeeee--------eeecC---C
Q 001358 878 VISKLEG---------H------SKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCR--------SLQTP---D 930 (1092)
Q Consensus 878 ~~~~l~~---------h------~~~V~~l~~spdg~-~l~s~s~Dg~i~iwd~~~~~~~~~~--------~~~~~---~ 930 (1092)
.. .+.+ + -.....|+++||++ ++++-+.++.|++||+.++...... .+... .
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 42 1111 1 12356799999998 4555566789999999876532100 00000 0
Q ss_pred CC--cCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccC------------CCcCEEEEEEecCCCEEEE
Q 001358 931 GV--MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFT 995 (1092)
Q Consensus 931 ~~--~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t 995 (1092)
+. .........++++++|.++++ ..+++|++||..++......-.+ .-.....+++++||+.+++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 00 000113568999999997777 57889999999887655322111 1235778999999999999
Q ss_pred EeCCCcEEEEECCCCce
Q 001358 996 SFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 996 ~s~Dg~i~vwd~~~~~~ 1012 (1092)
-+.+++|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 98999999999999875
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=3.7e-09 Score=111.12 Aligned_cols=244 Identities=14% Similarity=0.218 Sum_probs=170.0
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC-CCcc---ceEEecccccceeEEEeeCCCCcEEEEEEeCCCcE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~---~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
+.||+..|..++--.+.+-+++++.|++|++|.+... ..+. ...++..|+.+|.++.|..+-+ .++++ ||.|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~gi 806 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGGI 806 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCcc
Confidence 7899999999988888899999999999999998742 2222 4557889999999999999988 56665 8899
Q ss_pred EEEECCCCceeEEEec--CCcceEEEeecccCCccEEEEE-ecCCeEEEEEcCCCCceEEe-----cCCCCceEEEEEec
Q 001358 468 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYSA 539 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~-----~~~~~~i~~~~~s~ 539 (1092)
.+||.--|+.+..+.. ..+.+..+...++-+..+++.| +...+|+++|.+..+-...+ .++..-+.+++..+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9999988887754321 1122233332234355566665 78899999999887655443 33445688999999
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEE-EECCCCceEEEEeC
Q 001358 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI-WDMNKVQLLTTIDA 618 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i-wd~~~~~~~~~~~~ 618 (1092)
.|+.++++-. +++|.+.|.++|+.+....... -....++ .|..+.++....|.++.+ |..-+|....+...
T Consensus 887 ~GN~lAa~LS----nGci~~LDaR~G~vINswrpme---cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 887 KGNKLAAALS----NGCIAILDARNGKVINSWRPME---CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred CcchhhHHhc----CCcEEEEecCCCceeccCCccc---chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 9999998765 6779999999999877665443 2222222 345566777778888888 98877766555442
Q ss_pred CCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358 619 GGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
+.. ..--...-|.-++++.....+.+|.-
T Consensus 959 ppe----pahflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 959 PPE----PAHFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCc----chhhhhccCceeEEeccCcEEEEEec
Confidence 211 00011123556777777777777753
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.97 E-value=3.1e-07 Score=114.58 Aligned_cols=255 Identities=11% Similarity=0.093 Sum_probs=159.0
Q ss_pred eEEEEecCCC-EEEEEe-CCeEEEEEcCCceeeEEecC--C------------CCCeEEEEEcCCCCCEEEEEe-CCCeE
Q 001358 806 PCFALSKNDA-YLFSAS-GGVISLYIVMTFKTILTIMP--P------------SPTATSLAFNPHDNNVIAIGM-DDSTI 868 (1092)
Q Consensus 806 ~~~~~s~dg~-~l~~~s-dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~d~~~lasg~-~dg~v 868 (1092)
..+++++++. ++++-+ ++.|+++|.. +..+..+.+ . -.....+++++ ++..|+++. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 4678887644 444433 5889999986 444443332 1 12357899998 666555554 45789
Q ss_pred EEEEcCCceeeEeeccc-----------------cCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeee---ee
Q 001358 869 LIYNARSSEVISKLEGH-----------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ 927 (1092)
Q Consensus 869 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~ 927 (1092)
+++|..++.. .++.+- -.....++|+| ++.++++.+.++.|++||..++......- ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999887653 333210 12346799999 56677777888999999998765321100 00
Q ss_pred cCCCCc---CCCCCceEEEEecCCCEEEE--EeCCcEEEEEcCCceeeeee------------ccC--------CCcCEE
Q 001358 928 TPDGVM---TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQW------------FPI--------SSVPIS 982 (1092)
Q Consensus 928 ~~~~~~---~~~~~v~~l~~s~dg~~la~--~~d~~v~lwd~~~~~~~~~~------------~~~--------h~~~v~ 982 (1092)
...+.. ........++++|||+.|.+ ..+++|++||+.++...... +.. .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 000100 00124678999999986655 46689999999876532110 000 011346
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccc-cCCCC--ccCcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001358 983 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-LRPTT--SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 983 ~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~-~~~~~--~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
.++|++||..+++-+.+++|++||..++........... ...+. ...--.|..++++| ++..+++-+.++.|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 889999999999888999999999998876543321100 00000 00011356788888 578888888999999999
Q ss_pred cCCCC
Q 001358 1060 PNEPG 1064 (1092)
Q Consensus 1060 ~~~~~ 1064 (1092)
+....
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 96543
No 282
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.97 E-value=0.00023 Score=82.08 Aligned_cols=619 Identities=11% Similarity=0.072 Sum_probs=301.2
Q ss_pred cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-C---
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-D--- 407 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-d--- 407 (1092)
|..+-..|+.+-++| +|.+||.-|.=.+-.+.+......+. ..++. + ..-++|..++.-. |
T Consensus 304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~----------~ilet--~-~NLgPI~Dm~Vvd~d~q~ 368 (1096)
T KOG1897|consen 304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYV----------VILET--F-VNLGPIVDMCVVDLDRQG 368 (1096)
T ss_pred CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchh----------hhhhh--c-ccccceeeEEEEeccccC
Confidence 444456677777888 57888876665666665433221100 00000 0 1224677666543 2
Q ss_pred CCEEEEEe---CCCEEEEEEccCCCCccceEEecccccceeEEE--eeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001358 408 GSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 408 g~~las~~---~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~--~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
+..+++|+ .||+++|..-.-+-.......+.| -..++.+. +.+.-...++++-. + .-++..+...-......
T Consensus 369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~-~-eTrvl~i~~e~ee~~~~ 445 (1096)
T KOG1897|consen 369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI-S-ETRVLNISEEVEETEDP 445 (1096)
T ss_pred CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec-c-ceEEEEEccceEEeccc
Confidence 34566654 578899887654422222224555 33466666 43332221333322 2 23344433221111122
Q ss_pred cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+.......+..+.- +++.|+-.. ...||+++-. .....+..+. .++....+.+...++.++. ...+...++
T Consensus 446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~----~~~l~y~~i 516 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGG----GLALFYLEI 516 (1096)
T ss_pred cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecC----ccEEEEEEe
Confidence 22222333322211 112222211 2235555432 2223333333 3333344444445555543 233555565
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCC------CEEEEEeCCCeEEEE-ECCCCceEEEEeCCCC--CCCCceEEEccC
Q 001358 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAK------DQILAAGDDHVIKIW-DMNKVQLLTTIDAGGG--LPENPRICFNKN 633 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~s~dg~i~iw-d~~~~~~~~~~~~~~~--~~~v~~v~~s~~ 633 (1092)
..+.+....+.. -...|.|+.++|-+ ++++.|..+..+.+. -..+...+........ ...|...++-.|
T Consensus 517 ~~~~l~e~~~~~--~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 517 EDGGLREVSHKE--FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred eccceeeeeehe--ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence 555432222211 24679999998752 266777765554443 3344444433322211 122444555567
Q ss_pred CCEEEEEeCCCeEEEEECC--CCCeeeecc--cccccceeeeec----------CCcccccccccCCceeecCCC-----
Q 001358 634 GTLLAVIANENRIKILETP--ESNSVDAAG--VLSDNLRKLSVN----------PISTVTGAGIANGSVSVNEDP----- 694 (1092)
Q Consensus 634 ~~~l~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~v~~~~~~----------~~~~~~~~~~~~~~~~~~~~~----- 694 (1092)
..+|.++..||.+.-|.+. ++..-...+ -...++.--.|. .+.+.+. =..++...|.+-.
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~vi-Y~~n~kLv~spls~kev~ 673 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVI-YSSNGKLVYSPLSLKEVN 673 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEE-EecCCcEEEeccchHHhh
Confidence 8899999999998876554 332111110 011111111111 1111111 1111112221100
Q ss_pred ------CCC-cccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCc
Q 001358 695 ------KED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1092)
Q Consensus 695 ------s~d-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~ 767 (1092)
++. +..++++. .+.+++..++.-.....+.+ | -......+++.+....+.+.+.......=
T Consensus 674 ~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtv--p---l~~~prrI~~q~~sl~~~v~s~r~e~~~~------ 741 (1096)
T KOG1897|consen 674 HMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTV--P---LGESPRRICYQESSLTFGVLSNRIESSAE------ 741 (1096)
T ss_pred hhcccccccCCceEEEec-CCceEEEEecchhhcceeee--c---CCCChhheEecccceEEEEEecccccchh------
Confidence 111 12222222 24455555443222222221 1 12234455665534333333322111100
Q ss_pred cccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC-CCEEEEEe-----------CCeEEEEEcCCcee
Q 001358 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----------GGVISLYIVMTFKT 835 (1092)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~d-g~~l~~~s-----------dg~i~iwd~~~~~~ 835 (1092)
..+.......++++|..+-..+...++...+....+.++.|..| +.++++|. .|.|.++....+..
T Consensus 742 --~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 742 --YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred --hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 00111122345667766665555544443333444555568877 77887774 26788888877444
Q ss_pred eEEecCC--CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001358 836 ILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 913 (1092)
Q Consensus 836 ~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iw 913 (1092)
++....+ .+.+.++..- +|++|| +-...|++|+..+.+.+..-..|..++..+...-.|..++.|.--+.+.+-
T Consensus 820 L~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 820 LELVAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred eeeeeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 4443322 2344444332 576766 445789999999987777777899999999999999999999988888777
Q ss_pred EcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCc-------------------eeeeeec
Q 001358 914 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL-------------------TCLKQWF 974 (1092)
Q Consensus 914 d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~-------------------~~~~~~~ 974 (1092)
.....+.......+...+ .+++++.+-.+..++.+-.++.+++....+. +.+..+
T Consensus 896 ~y~~~eg~f~evArD~~p-----~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f- 969 (1096)
T KOG1897|consen 896 QYKGDEGNFEEVARDYNP-----NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKF- 969 (1096)
T ss_pred EEeccCCceEEeehhhCc-----cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeee-
Confidence 666544222112222211 3788999999988888877777666544321 111111
Q ss_pred cCCCcCEEE--EEEecCCCEEEEEeCCCcEEEE
Q 001358 975 PISSVPISQ--ATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 975 ~~h~~~v~~--l~fs~dg~~l~t~s~Dg~i~vw 1005 (1092)
.|..-|.. -..+|-+..+..|+.+|+|-+-
T Consensus 970 -~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 970 -RHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred -eecceEeeccccccCCCCcEEEEEccceEEEE
Confidence 13333333 1223444457778889988764
No 283
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=2.7e-08 Score=110.15 Aligned_cols=506 Identities=12% Similarity=0.109 Sum_probs=261.0
Q ss_pred ceEEeecCCCceEEEEEcC----cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358 337 PMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~----d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
-+-..|+|... ++|+++. .|+|.|+- ++|++-+..+++ -.+++++|+|..-.||
T Consensus 18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P--------------------~hatSLCWHpe~~vLa 75 (1416)
T KOG3617|consen 18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTYP--------------------VHATSLCWHPEEFVLA 75 (1416)
T ss_pred ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccccc--------------------eehhhhccChHHHHHh
Confidence 34557888887 7887764 47888885 667655432221 2356699999999999
Q ss_pred EEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE--EecC--Ccce
Q 001358 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--FEGH--GAPV 488 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~--~~~~--~~~v 488 (1092)
+|..-|.+.+|...+.+.-. ....|..+|.-+.||++|. .++|+..-|.|.+|....-..++. +-.| ...+
T Consensus 76 ~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~l 150 (1416)
T KOG3617|consen 76 QGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQL 150 (1416)
T ss_pred hccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhcee
Confidence 99999999999988754222 3446999999999999999 899999999999998763222221 1122 2344
Q ss_pred EEEeecccCCcc------EEEEEecCCeEE-EEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEe
Q 001358 489 YSLCPHAKENIH------FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 489 ~~i~~~~~~~~~------~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1092)
+-++|.-+.++. ..+..+.+..+- .+++.......... -.-.|+|..++.++. +|+|+-.|
T Consensus 151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--------ksgv~~g~~F~~~~~----~GtVyyvd 218 (1416)
T KOG3617|consen 151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--------KSGVPKGTEFLFAGK----SGTVYYVD 218 (1416)
T ss_pred eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--------ccCCCCCcEEEEEcC----CceEEEEc
Confidence 555554443321 122233333222 33332111100000 112367777777765 55677666
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCc---------------e-------------
Q 001358 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN-KVQ---------------L------------- 612 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~-~~~---------------~------------- 612 (1092)
- .|......+... . ..+-|.+...-+++.-.+-.+.++-.. +|. .
T Consensus 219 q-~g~~~~V~k~dS----~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvL 292 (1416)
T KOG3617|consen 219 Q-NGRQRTVHKLDS----E-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVL 292 (1416)
T ss_pred C-CCcEEEEEEccc----h-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccc
Confidence 3 344333332211 1 112222222222222222222222110 100 0
Q ss_pred --EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCe----------eeecccccccceeeeecCCccccc
Q 001358 613 --LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS----------VDAAGVLSDNLRKLSVNPISTVTG 680 (1092)
Q Consensus 613 --~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1092)
...+.. .....+.+++++..+..++.|...|.+.+|.-..... +...+...+.|..+.|+|..+.++
T Consensus 293 r~~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~a 371 (1416)
T KOG3617|consen 293 RKSEKYGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAA 371 (1416)
T ss_pred cCCcchhh-hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhh
Confidence 000000 1123588999999999999999999999996543311 112223334455555555444333
Q ss_pred ccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEE
Q 001358 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 760 (1092)
Q Consensus 681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~l 760 (1092)
+.+....+.+.... .+ ..|.....++.-+.++-.|..+.
T Consensus 372 vn~~~~v~ll~E~~-----l~-----------------------------~~h~~~~~A~q~ss~S~~L~hc~------- 410 (1416)
T KOG3617|consen 372 VNTEEDVVLLGENS-----LT-----------------------------VKHRGKMAAIQTSSNSFTLLHCT------- 410 (1416)
T ss_pred hhhhhheeeeccCc-----hH-----------------------------HHHhhhhHHhhhcCCceEEEeec-------
Confidence 32222111110000 00 00111111111111111111110
Q ss_pred eeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeE--E
Q 001358 761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL--T 838 (1092)
Q Consensus 761 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~--~ 838 (1092)
+|... . + ...-++..++.+. ..+++..+.+|..|++.+..... .
T Consensus 411 --------------------------sGv~~-~--l---~~~~~~~gi~l~e--~~lvvwNgr~v~~y~lq~SG~la~~~ 456 (1416)
T KOG3617|consen 411 --------------------------SGVSQ-D--L---KLSIPSAGICLGE--KQLVVWNGRTVVTYDLQTSGSLATIQ 456 (1416)
T ss_pred --------------------------cchhh-h--h---hhccchhhheecc--ceEEEEcCceEEEEEecccchhHHHh
Confidence 11000 0 0 0122334444433 34666667888899986332111 1
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEe--eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001358 839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916 (1092)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~ 916 (1092)
........+++++.. .++...++.+ |.++.+. |...+. +..-.+.|.-+.++ |.+++.....+.++-+|+.
T Consensus 457 ~~tF~cet~~la~~n--qN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi~--g~~l~v~t~~~~~k~~dvs 529 (1416)
T KOG3617|consen 457 CTTFSCETTSLAIVN--QNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDIM--GELLIVQTVSTVAKRLDVS 529 (1416)
T ss_pred hhhhccccchHhHhh--cceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhhc--cceeEEeehHHHHHHhhhh
Confidence 111223344555553 4455555544 5554443 333222 22234455555554 7899988888888888888
Q ss_pred CCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE---EeC----CcEEEEEcCCceee
Q 001358 917 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL---VHE----THLAIYEAEELTCL 970 (1092)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~---~~d----~~v~lwd~~~~~~~ 970 (1092)
..+...........+.....+.+..+..+..|.-+.+ ..+ .++..||.++++..
T Consensus 530 r~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~ 590 (1416)
T KOG3617|consen 530 RAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQ 590 (1416)
T ss_pred hhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHH
Confidence 7665544444444444444456788888877766544 222 47999999877643
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.96 E-value=3.3e-07 Score=90.59 Aligned_cols=209 Identities=18% Similarity=0.138 Sum_probs=139.9
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCc--eeeEE---ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee
Q 001358 808 FALSKNDAYLFSASGGVISLYIVMTF--KTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 808 ~~~s~dg~~l~~~sdg~i~iwd~~~~--~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1092)
++.++||++||+.-|..|.|-..++. ..+.+ .+.....=+.++||| |+.+||.+...|+|++||+....+ ..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 67889999999999999888876542 12222 222334558899999 999999999999999999986443 233
Q ss_pred cc-------ccCCeEEEEEcCCC------CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC
Q 001358 883 EG-------HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 883 ~~-------h~~~V~~l~~spdg------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
.. -...|..|.|.+-. ..|.....+|.++=|-+..+..........+.-.......|.++.+.|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 22 23567777776432 246667788888877764432111111111111111124799999999999
Q ss_pred EEEEEe-----C-------CcEEEEEcCCceeeee--------------------ec--------cCCCcCEEEEEEecC
Q 001358 950 RFLLVH-----E-------THLAIYEAEELTCLKQ--------------------WF--------PISSVPISQATFSCD 989 (1092)
Q Consensus 950 ~la~~~-----d-------~~v~lwd~~~~~~~~~--------------------~~--------~~h~~~v~~l~fs~d 989 (1092)
+|+++. + --+.-|.+-++.+-.. +. ......|..|..|||
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence 988841 1 1366676533211100 00 113678999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEeecc
Q 001358 990 CRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 990 g~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
|+.||+...+|.|.+|++++.++...+..
T Consensus 241 g~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 99999999999999999999999888763
No 285
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.95 E-value=1.5e-07 Score=92.21 Aligned_cols=198 Identities=15% Similarity=0.113 Sum_probs=135.3
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC-CceeeE
Q 001358 805 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVIS 880 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~~ 880 (1092)
..++.|++.+..+++.. +|.+.+-+...... ++..++|.-++....|+..+.+++.+|+.|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45778888888887775 58888666554443 447889999999999998788899999999999999998 344444
Q ss_pred e-eccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC--EEEEEeC
Q 001358 881 K-LEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT--RFLLVHE 956 (1092)
Q Consensus 881 ~-l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~--~la~~~d 956 (1092)
. .+-|...|.++.-+| ++.+++||+.|..|++||...-. +++ ......+.|..+..+|.-. .|+++.-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~----kPl----~~~~v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG----KPL----FKAKVGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc----Ccc----ccCccccceEEEEecchhhhHHHHHHHh
Confidence 4 456999999998886 57899999999999999998511 111 1112225799999998643 4445544
Q ss_pred CcEEEEEcCCcee----eeeeccCCCcCEEEEEEecCCCEEEEEe-CCCcEE-EEECCCC
Q 001358 957 THLAIYEAEELTC----LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLS-IHEASNL 1010 (1092)
Q Consensus 957 ~~v~lwd~~~~~~----~~~~~~~h~~~v~~l~fs~dg~~l~t~s-~Dg~i~-vwd~~~~ 1010 (1092)
+..+|.+...+.. .......|.+-...-.|..-..+|+||+ .|+.++ +|-..++
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 5556665543322 2222344555555555543345788865 466644 6755544
No 286
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.93 E-value=5.5e-09 Score=124.85 Aligned_cols=200 Identities=16% Similarity=0.252 Sum_probs=159.9
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEEC
Q 001358 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 472 (1092)
..|-..|.++.=+|...+.++|+.||.|++|.+..+..+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeeccc
Confidence 345678888988999999999999999999999998877655443 33 8899999999999 6888888999999996
Q ss_pred CCCceeEEEecCCcceEEEeecccCCccEEEEEe---cCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEEEEe
Q 001358 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
. .+.....+.|........|.. ..+++++ .++.+.+||...... -.....|.+.++++++.|..+.+++|+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred C-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 6 666677788888888887754 3455553 567899998654332 223377889999999999999999998
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001358 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
. +|.|++||++..++++.++. +. ...++++|+..|.++||++.....+.++..
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 7 55599999998887666553 33 467899999999999999998888777654
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=7.2e-09 Score=109.00 Aligned_cols=294 Identities=10% Similarity=0.106 Sum_probs=186.4
Q ss_pred eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCC-CceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
-+..+.||+..|..++--.+.+ -+++++.|++|++|.+... ..+.+ +.|..+ +..|+.+|..+.|
T Consensus 727 rL~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~t--------saCQfT-----Y~aHkk~i~~igf 792 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGT--------SACQFT-----YQAHKKPIHDIGF 792 (1034)
T ss_pred eeecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCcccc--------ceeeeE-----hhhccCcccceee
Confidence 3467789999999998777766 4789999999999999753 32321 122222 6679999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC-CCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001358 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 483 (1092)
-.|-++++++ ||-|++||.--|+.+.+...-..| +.+..+..-++ .+.++++.|+...+|+++|.+.++....++.
T Consensus 793 L~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 793 LADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred eeccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence 9999999876 677999999887766543222222 22333333333 3443555568899999999999887766643
Q ss_pred -----CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358 484 -----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 484 -----~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
...-+.++++.+ .|..++.+-..|.|.+.|.+++..+..+.........++ .|..+.++.... +..+.
T Consensus 870 cna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHsla 942 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHSLA 942 (1034)
T ss_pred ccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----cceeE
Confidence 345577887754 556899999999999999998877665554443333332 244455554433 44566
Q ss_pred E-EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC----CceEEEEeCCCCCCCCceEEEccC
Q 001358 559 E-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 559 i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
+ |....|......+... .+.. ....-|..++++.....+.+|--.. ...+..+....-....++++.-|-
T Consensus 943 VnWhaldgimh~q~kppp---epah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPL 1017 (1034)
T KOG4190|consen 943 VNWHALDGIMHLQDKPPP---EPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPL 1017 (1034)
T ss_pred eeehhcCCeeeeccCCCC---cchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccc
Confidence 6 8766665544433222 1111 1112355677777767777774221 122222322222223567777776
Q ss_pred CCEEEEEeCCCeEEE
Q 001358 634 GTLLAVIANENRIKI 648 (1092)
Q Consensus 634 ~~~l~~~~~dg~i~i 648 (1092)
..-+..|...|.|.+
T Consensus 1018 N~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1018 NCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cchhhccCCCCceee
Confidence 666677777787765
No 288
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.91 E-value=7.4e-09 Score=123.75 Aligned_cols=224 Identities=13% Similarity=0.184 Sum_probs=166.4
Q ss_pred CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCc
Q 001358 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGA 486 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~ 486 (1092)
++..+....++...-|..+.+.. .++.+-..|.++.=+|... +.+||+.||.|++|....+..+..++. ...
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred cccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence 34444444455555565554332 2334556788888888877 799999999999999999988877743 336
Q ss_pred ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC-
Q 001358 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 565 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~- 565 (1092)
.|+.+.|+ ..|..+..+..||.+.+|... .........|......+.|-. ..+++.+.+.+ ++.+.+||..-.
T Consensus 2253 ~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFN--HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhhhhhc--ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence 78888774 456688889999999999877 455556677777777777765 66777766555 778999997532
Q ss_pred --eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001358 566 --AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 566 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
.++. ..|. +.++++++.|..+.+++|+.+|.|++||++..++.++++. +. ...++++++..
T Consensus 2327 ~~s~v~--~~H~---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~ 2389 (2439)
T KOG1064|consen 2327 MNSLVH--TCHD---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSE 2389 (2439)
T ss_pred ccceee--eecC---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcc
Confidence 2222 5555 8999999999999999999999999999998887766643 33 46789999999
Q ss_pred CeEEEEECCCCCeeeecc
Q 001358 644 NRIKILETPESNSVDAAG 661 (1092)
Q Consensus 644 g~i~iw~~~~~~~~~~~~ 661 (1092)
|.++||++.....+..+.
T Consensus 2390 g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2390 GNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cceEEEEccccchhhcCc
Confidence 999999999776555544
No 289
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.88 E-value=3.1e-06 Score=95.76 Aligned_cols=220 Identities=10% Similarity=0.058 Sum_probs=127.6
Q ss_pred CCEEEEEeCCeEEEEEcCCceeeEEecCCCCC-----eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccC-
Q 001358 814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK- 887 (1092)
Q Consensus 814 g~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~- 887 (1092)
+..++...++.+..+|.++|+.+......... ..+.+.. ++ .++.++.+|.+..+|..+|+.+........
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~ 237 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPT 237 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence 33333334677777888888777665432111 0111222 23 566688899999999999987665431100
Q ss_pred ------CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcE
Q 001358 888 ------RVTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHL 959 (1092)
Q Consensus 888 ------~V~~l~~sp--dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v 959 (1092)
....+.-+| .+..+..++.+|.+..+|..+++..-... .+. ...+.. .++...+...++.+
T Consensus 238 ~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~~~------~~~~~~-~~~~vy~~~~~g~l 306 (394)
T PRK11138 238 GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----YGS------VNDFAV-DGGRIYLVDQNDRV 306 (394)
T ss_pred CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----CCC------ccCcEE-ECCEEEEEcCCCeE
Confidence 011111122 24566677789999999999886432111 111 111221 23444444678999
Q ss_pred EEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEEC
Q 001358 960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1039 (1092)
Q Consensus 960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1039 (1092)
..+|..+|+.+-...........+... .+.+|+.++.||.+...|..+|+.+.+..... ..+.+.-+ ..
T Consensus 307 ~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~--------~~~~s~P~-~~ 375 (394)
T PRK11138 307 YALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS--------SGFLSEPV-VA 375 (394)
T ss_pred EEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CcceeCCE-EE
Confidence 999999987654321111111222222 24567788999999999999999988775311 11111001 11
Q ss_pred CCCCCEEEEEeCCCcEEEEecC
Q 001358 1040 PLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1040 p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
+..|++++.||.|+.++.+
T Consensus 376 ---~~~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 376 ---DDKLLIQARDGTVYAITRP 394 (394)
T ss_pred ---CCEEEEEeCCceEEEEeCC
Confidence 3589999999999998763
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=1.2e-06 Score=98.35 Aligned_cols=212 Identities=9% Similarity=0.005 Sum_probs=131.3
Q ss_pred eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC-EEEEEeCC---CeEEEEEcCCceeeEeeccccCCeEEEEEcCCCC
Q 001358 824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899 (1092)
Q Consensus 824 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 899 (1092)
.|.+-|..... .+.+... +.+....|+| |++ .++..+.+ ..|+++|+.+++...... ..+......|||||+
T Consensus 170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCc-eeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 45555554333 3333333 3678899999 776 36654443 479999998887544333 455566788999998
Q ss_pred EEEEE-eCC--CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCC----cEEEEEcCCceeeee
Q 001358 900 ILVSS-GGD--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ 972 (1092)
Q Consensus 900 ~l~s~-s~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~----~v~lwd~~~~~~~~~ 972 (1092)
.|+.. +.+ ..|.++|+.+++.. .+....+ ......|+|||+.|+..++. .|+++|+.+++..+.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~---~LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT---QITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE---EcccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 77644 333 46888888776522 2322222 12345799999998875433 689999988877554
Q ss_pred eccCCCcCEEEEEEecCCCEEEEEeCC---------CcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCC
Q 001358 973 WFPISSVPISQATFSCDCRMVFTSFVD---------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1043 (1092)
Q Consensus 973 ~~~~h~~~v~~l~fs~dg~~l~t~s~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~ 1043 (1092)
...+. ....|||||++|+..+.. ..|.+.|+.++... .+... . . ....+|+| ||
T Consensus 317 t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~---~---~~~p~~SP-DG 379 (419)
T PRK04043 317 VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G---V---NQFPRFSS-DG 379 (419)
T ss_pred ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C---C---cCCeEECC-CC
Confidence 33222 124899999999877654 26888898888653 23211 0 0 11367899 47
Q ss_pred CEEEEEeCC-CcEEEEecCCCCC
Q 001358 1044 TQFAVGLTN-GEVYVIEPNEPGD 1065 (1092)
Q Consensus 1044 ~~l~~~~~d-g~v~~w~~~~~~~ 1065 (1092)
..++..+.+ +.-.+|-+.-.+.
T Consensus 380 ~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 380 GSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CEEEEEEccCCcEEEEEEecCCC
Confidence 777666654 4444555554443
No 291
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.85 E-value=2.1e-08 Score=109.51 Aligned_cols=212 Identities=16% Similarity=0.252 Sum_probs=147.0
Q ss_pred EEeeecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCc
Q 001358 388 KTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1092)
Q Consensus 388 ~~~~l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~ 466 (1092)
...++.||+..|+.+.|.|. -..||+++.|..+..||+.+... .......-...-..++|+-... .+...+..+.
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~ 181 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVLASSHGND 181 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chhhhccCCc
Confidence 34458899999999999995 56889999999999999987642 2223334445567889987666 3555666778
Q ss_pred EEEEECCCC-ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCceEEEEEecCCCEE
Q 001358 467 IKVWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRL 544 (1092)
Q Consensus 467 i~vwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l 544 (1092)
|++||...| .++..+++|...|+.+.|..... ..+.+.+.||+|++||.+........ .....++..-.+.|-|.-.
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence 999999876 56788999999999998864433 36889999999999999865543322 2234466666677755543
Q ss_pred EEEecCCCCceeEEE---------EeCCC-CeEEEEEeeccccCCceEEEEEcCC----------CCEEEEEeCCCeEEE
Q 001358 545 FSCGTSKEGESFLVE---------WNESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKI 604 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~i---------wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~s~dg~i~i 604 (1092)
+.--..+ .+.+.+ |+..+ .+.+..|.||. +.|....|-.. .-+|++-+.|.++++
T Consensus 261 ~~mp~~G--~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl 335 (1081)
T KOG0309|consen 261 CIMPMVG--GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL 335 (1081)
T ss_pred EeccccC--CeeeeeccccchhhhhccccCCcceeeecCcc---hHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence 3322211 223333 33332 35688899988 66655444322 236899999999999
Q ss_pred EECCC
Q 001358 605 WDMNK 609 (1092)
Q Consensus 605 wd~~~ 609 (1092)
|-+.+
T Consensus 336 WpI~~ 340 (1081)
T KOG0309|consen 336 WPIDS 340 (1081)
T ss_pred eeccH
Confidence 98754
No 292
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.83 E-value=6e-06 Score=84.80 Aligned_cols=205 Identities=15% Similarity=0.112 Sum_probs=141.2
Q ss_pred eEEEEec-CCCEEEEEe-C-CeEEEEEcCCceeeEEecCCCCCe--EEEEEcCCCCCEEEEEeC-----CCeEEEEEcC-
Q 001358 806 PCFALSK-NDAYLFSAS-G-GVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMD-----DSTILIYNAR- 874 (1092)
Q Consensus 806 ~~~~~s~-dg~~l~~~s-d-g~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~~-----dg~v~iwd~~- 874 (1092)
-.++.+| ++..++.+. - ....+||..+++....+....+.- -.-+||+ ||++|++.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence 3577888 555666665 3 458899999999988877655433 3578999 8999988643 4799999999
Q ss_pred CceeeEeeccccCCeEEEEEcCCCCEEEEEeC------------------CCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001358 875 SSEVISKLEGHSKRVTGLVFSDALNILVSSGG------------------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1092)
Q Consensus 875 ~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~------------------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1092)
+.+.+..+..|.-.-..+.+.|||+.|+.+-. +-.+..-|..+|+......+......
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~---- 162 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ---- 162 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc----
Confidence 67888889888777778999999988887521 22355566666664443222111122
Q ss_pred CCceEEEEecCCCEEEEE-eCC-------cEEEEEcCCceeeeeecc------CCCcCEEEEEEecCCCEEE-EEeCCCc
Q 001358 937 PSETHIQFHKDQTRFLLV-HET-------HLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVF-TSFVDGT 1001 (1092)
Q Consensus 937 ~~v~~l~~s~dg~~la~~-~d~-------~v~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~-t~s~Dg~ 1001 (1092)
.++..+++.++|..++.. ..+ -|.+++-.. .+..+.. .-...+-+|+++++|.+++ |+-.-++
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 259999999999987763 111 144444332 2221111 1267899999999998775 5556788
Q ss_pred EEEEECCCCceEEeec
Q 001358 1002 LSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 1002 i~vwd~~~~~~~~~~~ 1017 (1092)
+.+||..+|+++....
T Consensus 241 ~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEEECCCCCEeeccc
Confidence 9999999999986655
No 293
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.82 E-value=0.00077 Score=78.01 Aligned_cols=581 Identities=11% Similarity=0.109 Sum_probs=289.3
Q ss_pred EECCCCCEEEEEeCCCEEEEEEcc-CCCCccc---eEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358 403 VWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQ---QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~-~~~~~~~---~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
...++|...+.+..+|.+...-+. +++.... ....-+...-..|+...++| .+..|+.-|.=++-.+.+..-.
T Consensus 264 ~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d~ 340 (1096)
T KOG1897|consen 264 RVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPDV 340 (1096)
T ss_pred cccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCCC
Confidence 345678888888888877666555 4443322 12233555567788888887 4778887665555554432211
Q ss_pred -------EEEecCCcceEEEeecccC--CccEEEEEe---cCCeEEEEEcCCCCceE---EecCCCCceEEEE-------
Q 001358 479 -------YSFEGHGAPVYSLCPHAKE--NIHFIFSIS---VDGKIKAWLYDSLGARV---DYDAPGLGCTRMA------- 536 (1092)
Q Consensus 479 -------~~~~~~~~~v~~i~~~~~~--~~~~l~s~~---~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~------- 536 (1092)
.++. .-+||..++..... .+..+++++ .||++|+..-.-+-... .+.+ -..+..+.
T Consensus 341 gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~ 418 (1096)
T KOG1897|consen 341 GSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENY 418 (1096)
T ss_pred Cchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccC
Confidence 2332 34578887765432 233455543 57888887432111111 1111 01112221
Q ss_pred ----------------------------EecCCCEEEEEecCCCC-----ceeEEEEeCCCCeEEEEEeeccccCCceEE
Q 001358 537 ----------------------------YSANGRRLFSCGTSKEG-----ESFLVEWNESEGAIKRTYQGLQLQHNSVSV 583 (1092)
Q Consensus 537 ----------------------------~s~dg~~l~~~~~~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 583 (1092)
|+.+.+.+++....++. ...|++++.. ........ .+.++.
T Consensus 419 d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~----p~~~ti 492 (1096)
T KOG1897|consen 419 DNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRP----PGKITI 492 (1096)
T ss_pred CcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccC----CCceEE
Confidence 11122222222211110 0112333221 01111111 123333
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccC--C----CEEEEEeCCCeEEEEE-CCCCCe
Q 001358 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--G----TLLAVIANENRIKILE-TPESNS 656 (1092)
Q Consensus 584 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~l~~~~~dg~i~iw~-~~~~~~ 656 (1092)
...+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|- + +++++|..+..+.+.- .++...
T Consensus 493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~ 571 (1096)
T KOG1897|consen 493 GVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL 571 (1096)
T ss_pred EEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence 4444455577777777777777777665 333322233346888888873 2 3788887765555443 333322
Q ss_pred eeecccccccc-eeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccC--ccceecccCCccc
Q 001358 657 VDAAGVLSDNL-RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP--SECQSLLLPSKVK 733 (1092)
Q Consensus 657 ~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~--~~~~~~~~~~~~~ 733 (1092)
+.........+ .++-+. .+ -.|..+|.++..||.+.-|-++.... ....... -.
T Consensus 572 ~~~~~l~~~~iPRSIl~~---------------~~----e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~----lG 628 (1096)
T KOG1897|consen 572 ITHEQLSGEIIPRSILLT---------------TF----EGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVT----LG 628 (1096)
T ss_pred eeeeccCCCccchheeeE---------------Ee----eccceEEEEEcCCceEEEEEEEcccceEccccccc----cC
Confidence 22111111100 001110 11 23578888999999887666553321 1111111 12
Q ss_pred cccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec-
Q 001358 734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK- 812 (1092)
Q Consensus 734 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~- 812 (1092)
..++.--.|+..++.-+.+.+|.-..+|..... .+.....++...| + +.|+.
T Consensus 629 t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k----------------------Lv~spls~kev~~---~--c~f~s~ 681 (1096)
T KOG1897|consen 629 TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK----------------------LVYSPLSLKEVNH---M--CPFNSD 681 (1096)
T ss_pred CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc----------------------EEEeccchHHhhh---h--cccccc
Confidence 344555566666555555555544444432111 0011111110001 1 11222
Q ss_pred -CCCEEEEEeCCeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCC--------------CeEEEEEcCC
Q 001358 813 -NDAYLFSASGGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD--------------STILIYNARS 875 (1092)
Q Consensus 813 -dg~~l~~~sdg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--------------g~v~iwd~~~ 875 (1092)
-...++++..+.+++.-+..-+. ++++. -......+++.+ ....+++.+.- ..++++|-++
T Consensus 682 a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT 759 (1096)
T KOG1897|consen 682 AYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT 759 (1096)
T ss_pred cCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCc
Confidence 23467777777777776654332 23322 223455666665 34444443321 1466777766
Q ss_pred ceeeEeecc-c---cCCeEEEEEcCC-CCEEEEEeC----------CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001358 876 SEVISKLEG-H---SKRVTGLVFSDA-LNILVSSGG----------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 940 (1092)
Q Consensus 876 ~~~~~~l~~-h---~~~V~~l~~spd-g~~l~s~s~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1092)
-+.+...+- . .-.|.++.|..| +.+++.|.. .|.|.|+.+..+.. .+.+....-. +.+
T Consensus 760 f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~--L~~v~e~~v~----Gav- 832 (1096)
T KOG1897|consen 760 FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS--LELVAETVVK----GAV- 832 (1096)
T ss_pred eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc--eeeeeeeeec----cce-
Confidence 554433221 1 123455568877 677777643 36677777776221 1111111100 112
Q ss_pred EEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeecccc
Q 001358 941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 941 ~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
.+.---...++++-...|++|++.+.+.++. ...|..++..+...-.|..+++|.-=+++.+-.....+-........
T Consensus 833 -~aL~~fngkllA~In~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD 910 (1096)
T KOG1897|consen 833 -YALVEFNGKLLAGINQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD 910 (1096)
T ss_pred -eehhhhCCeEEEecCcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh
Confidence 2222223345556667899999998866665 55678899999999999999999887887766555444211111222
Q ss_pred ccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001358 1021 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus 1021 ~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
+.|. +..++..- +...++-+..+|.+.+-.......
T Consensus 911 ~~p~-------Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~~ 946 (1096)
T KOG1897|consen 911 YNPN-------WMTAVEIL--DDDTYLGAENSGNLFTVRKDSDAT 946 (1096)
T ss_pred hCcc-------ceeeEEEe--cCceEEeecccccEEEEEecCCCC
Confidence 2222 22233332 356788888889888877764443
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.82 E-value=5.5e-08 Score=99.80 Aligned_cols=165 Identities=21% Similarity=0.171 Sum_probs=115.5
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE-
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~- 414 (1092)
.++.+..+|.++ ++|++..++...++++...... .+.+|.. .. ...-+++.|-.+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~~---------~v---~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDVS---------CV---PKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeEe---------ec---ccCcceeeeeeccceEEEEe
Confidence 556667788887 7888888888777777654431 1122210 01 1223344454555555444
Q ss_pred --eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcceEEE
Q 001358 415 --YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 491 (1092)
Q Consensus 415 --~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~i 491 (1092)
+....+.+|....+.+. .+-||-..++.++|+||++ .++++..|..|+|-....-..+..| -||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44556677776654433 3558999999999999999 8999999999999877666555554 5799999999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001358 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 526 (1092)
+.. +++.|++++.|+++++||+.+++...++.
T Consensus 201 sl~---~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLT---DNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eec---cCceeeecCCCCcEEEEecccCCcccccc
Confidence 974 33579999999999999999988775443
No 295
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=6.9e-07 Score=99.39 Aligned_cols=339 Identities=14% Similarity=0.112 Sum_probs=189.2
Q ss_pred EEEEEECCCCCEEEEEe----CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC
Q 001358 399 VNRVVWSPDGSLLGVAY----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 399 V~~l~~spdg~~las~~----~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
-+-..|+|...++|+++ ..|.|.||- ++|+.-+.. +. .-.+++++|+|..- .|+.|-.-|.+.+|...+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~---P~hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TY---PVHATSLCWHPEEF--VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-cc---ceehhhhccChHHH--HHhhccccceeEEEecCC
Confidence 34467999999999886 357788874 445533211 22 22366799999866 788888899999999877
Q ss_pred CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CC--Cc--eEEEEEecCCCEEE---
Q 001358 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PG--LG--CTRMAYSANGRRLF--- 545 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~--~~--i~~~~~s~dg~~l~--- 545 (1092)
.+.-.....|..+|..+.|+ ++|..++++..-|.+.+|.++..+....... |. .. ..+...++++.-++
T Consensus 91 ~e~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ceeeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 77666667899999999995 5778999999999999998875444332221 11 12 23444566643221
Q ss_pred EEecCCCCc--eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001358 546 SCGTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 546 ~~~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
-++-.++.. ....-|..++.. +... -.-.|+|..++.++.+|+|+--|- +|+..........
T Consensus 169 KaaVtgDe~alD~~fnwk~~~a~--rs~~-----------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~-- 232 (1416)
T KOG3617|consen 169 KAAVTGDESALDEPFNWKESLAE--RSDE-----------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE-- 232 (1416)
T ss_pred hhhccCchhhhcccccCccchhh--cccc-----------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--
Confidence 111111111 112222211111 0110 012468888999999999988774 4555555544322
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECC-CCCeeeecccccccceeeeecCCcccccccccCCceeecCCC-CCCcccc
Q 001358 624 ENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-KEDVKPE 701 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~~l 701 (1092)
..+-|.+...-+++...+-++.++-.. +|.. ..+..+..+ +.. ...|. +
T Consensus 233 --vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~--------ee~~~vk~s------------------gk~GgrqGg-i 283 (1416)
T KOG3617|consen 233 --VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTS--------EERCAVKVS------------------GKLGGRQGG-I 283 (1416)
T ss_pred --HHHHHhcccceEEEEeeeceeeEEEecCCCch--------HHhhhhhhc------------------cccCCccCc-c
Confidence 335555545555555554444444332 2211 111111111 000 00111 3
Q ss_pred eeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCc
Q 001358 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1092)
Q Consensus 702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~ 781 (1092)
+++...|.++- ..... ......+.+++++..+..+.++...|.+.+|.-....+ ....++.
T Consensus 284 A~sEssGvLr~--------~eKyg-----~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f------~g~p~~d 344 (1416)
T KOG3617|consen 284 ACSESSGVLRK--------SEKYG-----LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGF------QGDPTID 344 (1416)
T ss_pred ccccccccccC--------Ccchh-----hhcCCceEEEEEeccceEEEecccCCcEEEeeecCccc------cCCCCcc
Confidence 33333231111 00111 11456789999999999999999999999997433222 1112344
Q ss_pred cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE
Q 001358 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 820 (1092)
Q Consensus 782 ~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~ 820 (1092)
+|.+.+.. ...+.|+.+.|.|--..+++-
T Consensus 345 ~w~l~~~~----------e~~g~I~~i~Wg~~k~~~avn 373 (1416)
T KOG3617|consen 345 VWTLNGKR----------ESLGKISLIRWGPIKSTAAVN 373 (1416)
T ss_pred eEEecCch----------hhccceEEEEeccccchhhhh
Confidence 55544332 245677788887755444443
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.77 E-value=9.3e-06 Score=91.93 Aligned_cols=153 Identities=19% Similarity=0.115 Sum_probs=93.5
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCc--ceE-----EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001358 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVY-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~v~-----~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 529 (1092)
.++.++.++.+.-+|.++|+.+.+...... ... .+.-.+.-++..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 467777788999999999998876643220 000 0000011123467788899999999999998887766543
Q ss_pred CceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC--CceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
....+... .++ .++.+.. ++.++.+|..+|+.+-.+....... ....+-.. .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v-~~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVV-SDG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEE-ECC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 22211122 234 4444432 5679999999999887765432000 00001111 1346777888999999999
Q ss_pred CCCceEEEEe
Q 001358 608 NKVQLLTTID 617 (1092)
Q Consensus 608 ~~~~~~~~~~ 617 (1092)
.+|+.+....
T Consensus 223 ~~G~~~W~~~ 232 (394)
T PRK11138 223 EQGQLIWQQR 232 (394)
T ss_pred cCChhhheec
Confidence 9988766543
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.77 E-value=7.6e-08 Score=98.82 Aligned_cols=160 Identities=9% Similarity=0.083 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCce----eeEeeccccCCeEEEEEcCCCCEEE---EEeCCCcEEEEEcCCCc
Q 001358 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDALNILV---SSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 847 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~l~---s~s~Dg~i~iwd~~~~~ 919 (1092)
..+..++ ++++||++..+....+++..... ++..... ...-+++.|..+..... .+++...+.+|+...+.
T Consensus 66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3445666 88899988888887777765433 2222221 12233344444443333 34555666777766422
Q ss_pred eeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeC
Q 001358 920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~ 998 (1092)
....-||.. .+..+++|||+++|+++ .|..|++-.+...-.+..+.-||..-|..++.-+ +..|+++|.
T Consensus 144 ------~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sG 213 (390)
T KOG3914|consen 144 ------CEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSG 213 (390)
T ss_pred ------cchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCC
Confidence 233445655 79999999999999996 7889999999888888888899999999999865 456999999
Q ss_pred CCcEEEEECCCCceEEeecc
Q 001358 999 DGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 999 Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
|++|++||+.+|+.+..+..
T Consensus 214 D~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CCcEEEEecccCCcccccch
Confidence 99999999999999877653
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.76 E-value=1.5e-05 Score=81.88 Aligned_cols=234 Identities=16% Similarity=0.156 Sum_probs=153.1
Q ss_pred ceEEeecCCCceEEEEEcCcCc-EEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE-
Q 001358 337 PMSMDFHPVQHTLLLVGTNVGD-TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~d~~-i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~- 414 (1092)
...++.+|+....++.+-.-|+ ..+||..+|+.+....- -....+.|| -+||+||++|++.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-----------~~gRHFyGH------g~fs~dG~~LytTE 69 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-----------PPGRHFYGH------GVFSPDGRLLYTTE 69 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-----------CCCCEEecC------EEEcCCCCEEEEec
Confidence 3458889966657888877665 78999999988764211 011114445 5899999999987
Q ss_pred ----eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEe----------------CCCcEEEEECCC
Q 001358 415 ----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------------DDKTIKVWDAVT 474 (1092)
Q Consensus 415 ----~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~----------------~d~~i~vwd~~~ 474 (1092)
...|.|-|||...+ ++...++..|.-.-..+.+.|||+.|.++-|+ .+.++..-|..+
T Consensus 70 nd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 70 NDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred cccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 34578999999832 45555777776667788999999854444443 234566778888
Q ss_pred CceeEE--E--ecCCcceEEEeecccCCccEEEEEecCCe-------EEEEEcCCCCceEEec-------CCCCceEEEE
Q 001358 475 GSRTYS--F--EGHGAPVYSLCPHAKENIHFIFSISVDGK-------IKAWLYDSLGARVDYD-------APGLGCTRMA 536 (1092)
Q Consensus 475 ~~~~~~--~--~~~~~~v~~i~~~~~~~~~~l~s~~~dg~-------i~vwd~~~~~~~~~~~-------~~~~~i~~~~ 536 (1092)
|+.+.. + .-|...|..+++.. +|..++..-..|. +-+++ ..+....+. .-.+-+-+|+
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred CceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEE
Confidence 988766 4 33777888888844 4444443332222 23332 222222222 2234688999
Q ss_pred EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEE
Q 001358 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1092)
+++++..+++.+. ..+.+.+||..+++.+....-. .+..++..+++ ++..+..|.+.
T Consensus 224 ~~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~-----D~cGva~~~~~--f~~ssG~G~~~ 280 (305)
T PF07433_consen 224 ADRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLP-----DACGVAPTDDG--FLVSSGQGQLI 280 (305)
T ss_pred EeCCCCEEEEECC---CCCEEEEEECCCCCEeeccccC-----ceeeeeecCCc--eEEeCCCccEE
Confidence 9999998877764 2567999999999998777653 36677776666 44444445533
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.75 E-value=6.7e-06 Score=81.51 Aligned_cols=248 Identities=10% Similarity=0.109 Sum_probs=135.0
Q ss_pred eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001358 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d 417 (1092)
|.++.++||+ +||.- .|..|.|=.....-.....++ .+.+...-.=..++||||+.+||.+...
T Consensus 1 W~~~~~~~Gk-~lAi~-qd~~iEiRsa~Ddf~si~~kc--------------qVpkD~~PQWRkl~WSpD~tlLa~a~S~ 64 (282)
T PF15492_consen 1 WHLALSSDGK-LLAIL-QDQCIEIRSAKDDFSSIIGKC--------------QVPKDPNPQWRKLAWSPDCTLLAYAEST 64 (282)
T ss_pred CceeecCCCc-EEEEE-eccEEEEEeccCCchheeEEE--------------ecCCCCCchheEEEECCCCcEEEEEcCC
Confidence 4578899998 66654 456777766554321111111 1123334455679999999999999999
Q ss_pred CEEEEEEccCCCCcc--ceEEec-ccccceeEEEeeCCC-----CcEEEEEEeCCCcEEEEECCC-----CceeEEEec-
Q 001358 418 HIVQLYAYHGGSDAR--QQLEID-AHVGNVNDLAFSAPC-----KQISVITCGDDKTIKVWDAVT-----GSRTYSFEG- 483 (1092)
Q Consensus 418 ~~i~iwd~~~~~~~~--~~~~l~-~h~~~v~~~~~s~d~-----~~l~l~s~~~d~~i~vwd~~~-----~~~~~~~~~- 483 (1092)
|+|+++|+.+..... ...... .-...|..+.|.+-. .. .|+.-..+|.++=+-+.. .+..+++..
T Consensus 65 G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~ 143 (282)
T PF15492_consen 65 GTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS 143 (282)
T ss_pred CeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEec
Confidence 999999998744321 000011 123467777776542 11 345556677776665422 233444432
Q ss_pred --CCcceEEEeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEe---cCCCEEEEEecCCC--Cce
Q 001358 484 --HGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYS---ANGRRLFSCGTSKE--GES 555 (1092)
Q Consensus 484 --~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s---~dg~~l~~~~~~~~--~~~ 555 (1092)
+...|.++++++.. ++|+.|+. ...-..+ ......+++-.+- |..+.+. ...+.. ...
T Consensus 144 ~~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~-~~~~~~~~~~~ 209 (282)
T PF15492_consen 144 SHYPHGINSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVT-SSEDDITASSK 209 (282)
T ss_pred ccCCCceeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEcc-ccCcccccccc
Confidence 46689999997654 45555543 2210000 0011111111111 1111111 110000 000
Q ss_pred eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001358 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
+..+|.+-+... +.........|..|..+|||+.|++...+|.|.+|++.+-++......+
T Consensus 210 ~~~~~~~~~~~~---fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 210 RRGLLRIPSFKF---FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccceeeccceee---eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 112233222211 1111222478999999999999999999999999999987776665443
No 300
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.75 E-value=1.2e-06 Score=84.86 Aligned_cols=148 Identities=11% Similarity=-0.035 Sum_probs=107.8
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
+.++++|+|++++++.+....|..|.+...............++.=.+..|+.... .++++..||++.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 88999999999999999999999999886544332223444555566889998887 7999999999999999865443
Q ss_pred E-----EEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--------CceEEEEEecCCCEEE
Q 001358 479 Y-----SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--------LGCTRMAYSANGRRLF 545 (1092)
Q Consensus 479 ~-----~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--------~~i~~~~~s~dg~~l~ 545 (1092)
. +-..|.+.+..+.|++.+--.+|+..-.-+.+++.|+++......+.... ..|..-.|+.++.-+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 2 22458899999999875555677777777889999999877654333222 2355566666665555
Q ss_pred EEe
Q 001358 546 SCG 548 (1092)
Q Consensus 546 ~~~ 548 (1092)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 443
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.73 E-value=1.6e-07 Score=92.32 Aligned_cols=261 Identities=14% Similarity=0.198 Sum_probs=164.9
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCce-----eeEEecCCCC------------CeEEEEEcCC-CCCEEEE
Q 001358 801 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-----TILTIMPPSP------------TATSLAFNPH-DNNVIAI 861 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~-----~~~~~~~~~~------------~i~~l~~s~~-d~~~las 861 (1092)
....|+++.|...|.|+++|. +|+|.+|.-+... ....+++|.. .|..+.|..+ +...+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 567789999999999999998 6889998765332 2234555542 3566666542 2335556
Q ss_pred EeCCCeEEEEEcCCcee-------------------------------------e----E-ee-ccccCCeEEEEEcCCC
Q 001358 862 GMDDSTILIYNARSSEV-------------------------------------I----S-KL-EGHSKRVTGLVFSDAL 898 (1092)
Q Consensus 862 g~~dg~v~iwd~~~~~~-------------------------------------~----~-~l-~~h~~~V~~l~~spdg 898 (1092)
.+.|++|++|.+..... + . .. ..|.-.|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 77899999998753210 0 1 11 3577788899999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE--EeCCcEEEEEcCCcee------e
Q 001358 899 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTC------L 970 (1092)
Q Consensus 899 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~--~~d~~v~lwd~~~~~~------~ 970 (1092)
..++++ .|-.|.+|+++-......-+--.+.........|++..|+|....+.. ++.|.|++-|++.... +
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 888876 566799999875332111111111111111135788999998765554 6789999999873211 1
Q ss_pred -ee--------eccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ceEEeeccccc----cCCCCccCcccc-eE
Q 001358 971 -KQ--------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAY----LRPTTSCLHVYP-HA 1035 (1092)
Q Consensus 971 -~~--------~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~-~~~~~~~~~~~----~~~~~~~~~v~~-~~ 1035 (1092)
.. ++.+-...|..+.||++|+++++-.. -+|++||+... ..+.++..+.. +..-+-.+.|+. ..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 00 11122667889999999999998654 58999999865 34444432111 111122344544 56
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001358 1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1036 ~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
+.|+.+ ...+++|+..+...++-...++
T Consensus 343 isfSgd-~~~v~sgsy~NNfgiyp~~ssg 370 (460)
T COG5170 343 ISFSGD-DKHVLSGSYSNNFGIYPTDSSG 370 (460)
T ss_pred EEecCC-cccccccccccceeeeccccCC
Confidence 778874 5778888887777777644433
No 302
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.72 E-value=1.3e-07 Score=103.61 Aligned_cols=294 Identities=13% Similarity=0.160 Sum_probs=188.2
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC-CccceEEecccc--cceeEEEeeCCCCcE-EEEEEeCCCcEEEEE
Q 001358 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHV--GNVNDLAFSAPCKQI-SVITCGDDKTIKVWD 471 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~l~~h~--~~v~~~~~s~d~~~l-~l~s~~~d~~i~vwd 471 (1092)
.+.+.++..+|.|+-+|.++.-| +.+-|+...- ..+ +-.|. -.|-...|+|....- .+|+.+ .....+|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr----~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPR----WLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWN 97 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCce----eeeccCcchhcceecccCCCCceeEEecC-cchhhhhh
Confidence 46788899999999999999888 6677776432 222 11232 246778888865433 455444 45567898
Q ss_pred CCCC---ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEecCCCEEEEE
Q 001358 472 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 472 ~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
+... ..-..+.+|...|+.+.|++.. ...+++++.|-.+..||+++..... ....-......+.|+.....+.+.
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence 7643 3345668999999999998753 3689999999999999999866544 333334455678887754444433
Q ss_pred ecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCC
Q 001358 548 GTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
+. ...|.+||.+.| ..+..+++|. ..|+.+.|..- ...+.+.+.||+|+.||............... ..+
T Consensus 177 sh----g~~i~vwd~r~gs~pl~s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~-~pi 248 (1081)
T KOG0309|consen 177 SH----GNDIFVWDLRKGSTPLCSLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN-FPI 248 (1081)
T ss_pred cc----CCceEEEeccCCCcceEEecccc---eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecccc-Ccc
Confidence 32 334999999865 5667777766 77888888653 35678899999999999875433222111111 235
Q ss_pred ceEEEccCCCEEEE--EeCCCeEEE---------EECCC-CCeeeecccccccceeeeecCCcccccccccCCceeecCC
Q 001358 626 PRICFNKNGTLLAV--IANENRIKI---------LETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 693 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~--~~~dg~i~i---------w~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1092)
..-.+-|-|.-.++ .-.+..+.+ |+..+ .+++..+.||.+.|....|-...... ++
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~------------~d 316 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECD------------GD 316 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccccc------------CC
Confidence 55555553332222 111223333 33333 36788888999888766664332211 11
Q ss_pred CCCCcccceeeccccccceecee
Q 001358 694 PKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 694 ~s~d~~~l~s~~~d~~i~~w~~~ 716 (1092)
.....-.|++-+.|.++|+|.+.
T Consensus 317 ~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 317 YDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred CCccceeEEEeecCCceEeeecc
Confidence 12233468899999999999875
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.69 E-value=2.3e-05 Score=82.30 Aligned_cols=221 Identities=19% Similarity=0.181 Sum_probs=141.3
Q ss_pred EEEECC-CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEee-CCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358 401 RVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS-APCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 401 ~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s-~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
+++|.+ +|.++++-...+.|..|+..++.... +... . ...+++. +++. ++.+... .+.++|..+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~~-~-~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDLP-G-PNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EESS-S-EEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----EecC-C-CceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 467888 67777776678999999998874221 2211 2 6677777 6655 5555544 4566699998655
Q ss_pred EEEec-----CCcceEEEeecccCCccEEEEEecC--------CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEE
Q 001358 479 YSFEG-----HGAPVYSLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 479 ~~~~~-----~~~~v~~i~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
..... .....+.+++ .++|.+.++.... |.|..++.. .........-.....++|+||++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~v--d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAV--DPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEE--cCCCCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 44432 3345677777 4567777766544 456666655 22332222334567899999999887
Q ss_pred EEecCCCCceeEEEEeCCCCe--E--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001358 546 SCGTSKEGESFLVEWNESEGA--I--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1092)
.+.. ..+.|+.++..... . .+.+.......+....+++..+|+..++....+.|.+++.+ |+.+..+....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~- 224 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV- 224 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS-
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC-
Confidence 6543 25568888875322 2 22332222111347889999999888888889999999987 89988888763
Q ss_pred CCCCceEEEc-cCCCEEEEEe
Q 001358 622 LPENPRICFN-KNGTLLAVIA 641 (1092)
Q Consensus 622 ~~~v~~v~~s-~~~~~l~~~~ 641 (1092)
..+++++|. ++.+.|.+.+
T Consensus 225 -~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 -PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -SSEEEEEEESTTSSEEEEEE
T ss_pred -CCEEEEEEECCCCCEEEEEe
Confidence 357899994 6766666544
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=1.6e-08 Score=112.52 Aligned_cols=217 Identities=15% Similarity=0.236 Sum_probs=157.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..|...-+|++||-+.+.|++|+..|.|+++++.+|.... ....|..+|+.+.=+.||..++..+....--..+|+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 66789999999999999999999999999999999997665 567899999999999999953222223333578999
Q ss_pred CCC-CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC----CCceEEEEEecCCCEEEE
Q 001358 472 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 472 ~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~i~~~~~s~dg~~l~~ 546 (1092)
+.+ +...++|.+- .++.|+.+ .+.-+.|+......+||+++.....++-.. ...-....|+|+.+.++-
T Consensus 1174 ~~s~~~~~Hsf~ed----~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDED----KAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred cccccCcccccccc----ceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 764 5556666532 34455433 233445555567889999998876653221 123356789999988875
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCc
Q 001358 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1092)
-| .+||.+..+.++.|.... .. ..-.|+|.|..++.-++ |||+++.+.++..+.-. -.
T Consensus 1248 dG---------vLWDvR~~~aIh~FD~ft---~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld----qc 1305 (1516)
T KOG1832|consen 1248 DG---------VLWDVRIPEAIHRFDQFT---DY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD----QC 1305 (1516)
T ss_pred Cc---------eeeeeccHHHHhhhhhhe---ec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc----ce
Confidence 32 579999888887776544 11 23359999999998775 99999999887765432 25
Q ss_pred eEEEccCCCEEEE
Q 001358 627 RICFNKNGTLLAV 639 (1092)
Q Consensus 627 ~v~~s~~~~~l~~ 639 (1092)
.+.|+..|..+..
T Consensus 1306 ~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYA 1318 (1516)
T ss_pred EEEeccCccchhh
Confidence 6788887776543
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.65 E-value=7.2e-06 Score=86.01 Aligned_cols=223 Identities=13% Similarity=0.122 Sum_probs=139.0
Q ss_pred CCeEEEEEcCCceeeEEecCC--CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCC
Q 001358 822 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899 (1092)
Q Consensus 822 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 899 (1092)
+|.|..||..+|+.+....-. .....+.++. ++..+++++.++.++.||..+|+.+.+... .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999998877531 1222222332 345777778999999999999999877764 22211111 22455
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCC
Q 001358 900 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS 978 (1092)
Q Consensus 900 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~~~~~~~~~~~h~ 978 (1092)
.++.++.|+.|..+|..+++..-.......+... .........++..++++ .++.|..+|..+|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 6677778889999999998754431111111110 12233344447777775 589999999999998776543221
Q ss_pred c---------CEEEEEEecCCCEEEEEeCCCc-EEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEE
Q 001358 979 V---------PISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1048 (1092)
Q Consensus 979 ~---------~v~~l~fs~dg~~l~t~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~ 1048 (1092)
. .+..-....++ .++.++.++. +.+ |+.+|+.+.+.. ... .... ..+ ++..+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~~~---~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IYSL---PSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------ECEC---EEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----ccCC---cee-eCCEEEE
Confidence 1 12222233345 7777777886 555 999998663221 111 1110 222 3577888
Q ss_pred EeCCCcEEEEecCCCCCccc
Q 001358 1049 GLTNGEVYVIEPNEPGDTWA 1068 (1092)
Q Consensus 1049 ~~~dg~v~~w~~~~~~~~~~ 1068 (1092)
++.++.|..||+...+..|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 88999999999998887774
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.63 E-value=6.6e-05 Score=78.85 Aligned_cols=219 Identities=16% Similarity=0.135 Sum_probs=143.2
Q ss_pred EEeecC-CCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC-CCCCEEEEEeC
Q 001358 339 SMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-PDGSLLGVAYS 416 (1092)
Q Consensus 339 ~v~~sp-dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s-pdg~~las~~~ 416 (1092)
+++|.+ +|. |+.+-...+.|..|+..++..... . . .....+++. ++|+++ ++..
T Consensus 4 gp~~d~~~g~-l~~~D~~~~~i~~~~~~~~~~~~~--------------------~-~-~~~~G~~~~~~~g~l~-v~~~ 59 (246)
T PF08450_consen 4 GPVWDPRDGR-LYWVDIPGGRIYRVDPDTGEVEVI--------------------D-L-PGPNGMAFDRPDGRLY-VADS 59 (246)
T ss_dssp EEEEETTTTE-EEEEETTTTEEEEEETTTTEEEEE--------------------E-S-SSEEEEEEECTTSEEE-EEET
T ss_pred ceEEECCCCE-EEEEEcCCCEEEEEECCCCeEEEE--------------------e-c-CCCceEEEEccCCEEE-EEEc
Confidence 578888 555 788887889999999988765421 1 1 126677777 665554 4445
Q ss_pred CCEEEEEEccCCCCccceEEec--c-cccceeEEEeeCCCCcEEEEEEeCC--------CcEEEEECCCCceeEEEecCC
Q 001358 417 KHIVQLYAYHGGSDARQQLEID--A-HVGNVNDLAFSAPCKQISVITCGDD--------KTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~l~--~-h~~~v~~~~~s~d~~~l~l~s~~~d--------~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
.+ +.++|..+++.. ...... . .....+.+++.++|+ +.++.... |.|..++.. ++...... .-
T Consensus 60 ~~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~ 133 (246)
T PF08450_consen 60 GG-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL 133 (246)
T ss_dssp TC-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred Cc-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence 55 566699887533 222331 2 345788999999999 56665533 457777766 55443333 34
Q ss_pred cceEEEeecccCCccEE-EEEecCCeEEEEEcCCCCc----eE---EecCCCCceEEEEEecCCCEEEEEecCCCCceeE
Q 001358 486 APVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGA----RV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~----~~---~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
...+.++|++ +++.| ++-+..+.|..++++.... .. .+....+....+++..+|+..++... .+.|
T Consensus 134 ~~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I 207 (246)
T PF08450_consen 134 GFPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRI 207 (246)
T ss_dssp SSEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEE
T ss_pred ccccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEE
Confidence 5567888865 55555 5667788899999865433 11 12222234788999999987777553 5569
Q ss_pred EEEeCCCCeEEEEEeeccccCCceEEEEE-cCCCCEEEEEe
Q 001358 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAG 597 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~s 597 (1092)
.++|.. |+.+..+.... ..+++++| .++.+.|++.+
T Consensus 208 ~~~~p~-G~~~~~i~~p~---~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELPV---PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEETT-SCEEEEEE-SS---SSEEEEEEESTTSSEEEEEE
T ss_pred EEECCC-ccEEEEEcCCC---CCEEEEEEECCCCCEEEEEe
Confidence 999988 88888887764 57899999 46767776654
No 307
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.62 E-value=2.9e-05 Score=80.78 Aligned_cols=232 Identities=14% Similarity=0.145 Sum_probs=143.5
Q ss_pred CccccCCCCCceeeecCCCC---CCCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcC
Q 001358 780 PRLYQPRHGPQFMVNDTTDS---NSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 853 (1092)
Q Consensus 780 ~~~~~~~~~~~~~~~~l~~~---~~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 853 (1092)
+.+||..+-.......++.. ........+++|.||+++.+.. .-.|.|.|+...+.+..+..+. .. -.-|
T Consensus 69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C~---~iyP 144 (342)
T PF06433_consen 69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-CW---LIYP 144 (342)
T ss_dssp EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-EE---EEEE
T ss_pred EEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-EE---EEEe
Confidence 34455555444444444431 0112334578999999999886 4779999999999988876432 11 1122
Q ss_pred CCCCEEEEEeCCCeEEEEEcC-CceeeEe----eccccCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 001358 854 HDNNVIAIGMDDSTILIYNAR-SSEVISK----LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ 927 (1092)
Q Consensus 854 ~d~~~lasg~~dg~v~iwd~~-~~~~~~~----l~~h~~~V-~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 927 (1092)
..++-+.+-|.||++.-..+. .|+...+ |..-.+++ ..-+++.++..++..+..|.|+--|+............
T Consensus 145 ~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~ 224 (342)
T PF06433_consen 145 SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS 224 (342)
T ss_dssp EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence 234567788999999999887 4554322 11122222 23445556666776889999999999887655544443
Q ss_pred cCCCCc---CC-CCCceEEEEecCCCEEEE----EeCC-------cEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC-
Q 001358 928 TPDGVM---TL-APSETHIQFHKDQTRFLL----VHET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR- 991 (1092)
Q Consensus 928 ~~~~~~---~~-~~~v~~l~~s~dg~~la~----~~d~-------~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~- 991 (1092)
...... .. .+.-.-+++++....|.+ +.++ .|.+||+.+++.+..+... .++.++..|.|.+
T Consensus 225 ~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 225 LLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKP 302 (342)
T ss_dssp SS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-
T ss_pred ccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCc
Confidence 321100 00 034566899887766655 2222 4888999999999886543 3577999999887
Q ss_pred EEEEE-eCCCcEEEEECCCCceEEeec
Q 001358 992 MVFTS-FVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 992 ~l~t~-s~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
+|++. ..++.+.+||..+|+.+.++.
T Consensus 303 ~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 303 LLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 45444 457899999999999998887
No 308
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=9.7e-07 Score=91.61 Aligned_cols=298 Identities=13% Similarity=0.139 Sum_probs=190.9
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
|...|+.+..+ -.+++++++-||.++.|.-..- .|..+.. ....|...+.+++.+.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i--------------------sGvEfVK---hFraHL~~I~sl~~S~ 63 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI--------------------SGVEFVK---HFRAHLGVILSLAVSY 63 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCc--------------------cceeehh---hhHHHHHHHHhhhccc
Confidence 66667666544 4567999999999999862110 1111111 1113777888999999
Q ss_pred CCCEEEEEe--CCeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCC--CEEEEEeCCCeEEEEEcCCce-eeEee-ccc
Q 001358 813 NDAYLFSAS--GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDN--NVIAIGMDDSTILIYNARSSE-VISKL-EGH 885 (1092)
Q Consensus 813 dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~--~~lasg~~dg~v~iwd~~~~~-~~~~l-~~h 885 (1092)
+|.++.+.+ |..++++|+++...+..++-.. ....+...++.|. .+-++.-.+|.+.++|-.... ....+ .-|
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH 143 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH 143 (558)
T ss_pred cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence 999999976 6889999998776654333211 1122333344111 233334467899999976543 33333 349
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee--eee------eecCCCCcCCCCCceEEEEecCCCEEEE-EeC
Q 001358 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT--CRS------LQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE 956 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~--~~~------~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d 956 (1092)
..+|.++.+++-+..++|....|.|.-|..+. ..+. ... -..+-+.........++.|+|+|..+++ +.|
T Consensus 144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D 222 (558)
T KOG0882|consen 144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD 222 (558)
T ss_pred cCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence 99999999999999999999999999999884 1000 000 0001111122245789999999999999 788
Q ss_pred CcEEEEEcCCceeeeeeccC-------------------------------C-CcCEEEEEEecCCCEEEEEeCCCcEEE
Q 001358 957 THLAIYEAEELTCLKQWFPI-------------------------------S-SVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus 957 ~~v~lwd~~~~~~~~~~~~~-------------------------------h-~~~v~~l~fs~dg~~l~t~s~Dg~i~v 1004 (1092)
..|++++..+|+.++.+-.. | ...-+.++|...|.+|+-++-=| |+|
T Consensus 223 rkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikv 301 (558)
T KOG0882|consen 223 RKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKV 301 (558)
T ss_pred cEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEE
Confidence 99999999998766542111 2 34456788999999999887654 899
Q ss_pred EECCCCceEEeecccc---------ccCCCC-ccC------cccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001358 1005 HEASNLEVQCRILSTA---------YLRPTT-SCL------HVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus 1005 wd~~~~~~~~~~~~~~---------~~~~~~-~~~------~v~~~~~~~~p~~~~~l~~~~~dg~v~~w 1058 (1092)
.++.++.+.+.+.-.. +..... +.. ...++ +.+.+ |+..+.++-.-..+++|
T Consensus 302 in~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~-~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 302 INLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL-LEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc-cccCC-CCeEEEeeeecceEEEE
Confidence 9999998876553111 111000 000 01111 22444 57888888888899998
No 309
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.61 E-value=1e-05 Score=78.47 Aligned_cols=202 Identities=13% Similarity=0.092 Sum_probs=135.1
Q ss_pred CEEEEEe-CCeEEEEEcCCceee-EEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEE
Q 001358 815 AYLFSAS-GGVISLYIVMTFKTI-LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892 (1092)
Q Consensus 815 ~~l~~~s-dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 892 (1092)
-+||.++ .|...+|...+.+.. .....+...|+-+.-.-+...-+..++.|.++++.+++.+.....+.-..-.+.++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 4566664 689999999866543 33333444332221111122345567888888888887654333222111237889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceee-
Q 001358 893 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCL- 970 (1092)
Q Consensus 893 ~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~- 970 (1092)
++|+|++++++.++...|..|.++.......+....... ..-.+..||.....+|+ ..||++.|||++.....
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-----D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-----DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-----CCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 999999999999999999999998754333221111111 23568899999999998 58999999999865432
Q ss_pred ---eeeccCCCcCEEEEEEecCCC--EEEEEeCCCcEEEEECCCCceEEeeccccc
Q 001358 971 ---KQWFPISSVPISQATFSCDCR--MVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021 (1092)
Q Consensus 971 ---~~~~~~h~~~v~~l~fs~dg~--~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~ 1021 (1092)
....+.|.+.+..+.||+-|. +|+..-.-+.+.|-|++++.-...+.....
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence 223456899999999998663 455555667899999999988877764443
No 310
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.59 E-value=9.7e-07 Score=86.97 Aligned_cols=160 Identities=21% Similarity=0.279 Sum_probs=109.8
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce---eeEEecCCC-----CCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001358 800 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---TILTIMPPS-----PTATSLAFNPHDNNVIAIGMDDSTILIY 871 (1092)
Q Consensus 800 ~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~---~~~~~~~~~-----~~i~~l~~s~~d~~~lasg~~dg~v~iw 871 (1092)
.|...+.++.|..|...++++.|=.|-+|+++--. .+..+++|. .-|++..|+|.....+...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 48888999999999999999999999999986322 234455554 3578999999777888889999999999
Q ss_pred EcCCcee----------------eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001358 872 NARSSEV----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 872 d~~~~~~----------------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
|++...+ ..-+.+-...|..+.|+++|+++++-+. -+|+|||+...+. ++.+..-|...
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~----pikTi~~h~~l 324 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN----PIKTIPMHCDL 324 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC----CceeechHHHH
Confidence 9973211 1112223457888999999999997654 5699999986431 22222111100
Q ss_pred ---------CCC---ceEEEEecCCCEEEEE-eCCcEEEEEc
Q 001358 936 ---------APS---ETHIQFHKDQTRFLLV-HETHLAIYEA 964 (1092)
Q Consensus 936 ---------~~~---v~~l~~s~dg~~la~~-~d~~v~lwd~ 964 (1092)
... -..+.||.|.+.+.+| ..+...+|-+
T Consensus 325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 011 2457889888888874 4555556553
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.56 E-value=1.6e-05 Score=83.35 Aligned_cols=195 Identities=13% Similarity=0.092 Sum_probs=121.1
Q ss_pred CCCEEEEE-eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee-cccc---C
Q 001358 813 NDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHS---K 887 (1092)
Q Consensus 813 dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~---~ 887 (1092)
++..++++ .++.+..||..+|+.+..+............ .+..+++++.++.++.+|..+|+.+.+. .... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 45555555 5799999999999998887653221122222 3346666778899999999999998874 3221 1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC--CCCCceEEEEecCCCEEEEEeCCc-EEEEEc
Q 001358 888 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT--LAPSETHIQFHKDQTRFLLVHETH-LAIYEA 964 (1092)
Q Consensus 888 ~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~s~dg~~la~~~d~~-v~lwd~ 964 (1092)
.........++..++.+..++.|..+|.++|+..-............ ....+..-....++..+++..++. +.+ |+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~ 190 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DL 190 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ET
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-EC
Confidence 12223333347888888889999999999987654333322221110 000122333333554444456665 555 99
Q ss_pred CCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEe
Q 001358 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~ 1015 (1092)
.+++.+-... ...+.. ....++..|+.++.++.|..||+.+|+....
T Consensus 191 ~tg~~~w~~~---~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 191 ATGEKLWSKP---ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEEEC---SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEec---CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 9998663211 122222 2457788888888999999999999988743
No 312
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.56 E-value=7.8e-05 Score=77.61 Aligned_cols=282 Identities=13% Similarity=0.146 Sum_probs=154.7
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceEEEEeCCCC---
Q 001358 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG--- 621 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~--- 621 (1092)
..++++|..+++.+..+..- -...+..+|+++.+++++ ..-.|.+||..+-.....+..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g-----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG-----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeecc-----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 46999999999988888763 355577899999998754 344699999999988887765543
Q ss_pred --CCCCceEEEccCCCEEEEEeC--CCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCC
Q 001358 622 --LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 697 (1092)
Q Consensus 622 --~~~v~~v~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 697 (1092)
.......+++.||+++.+... ..+|.|.|+..++.+..+.... |.-+-|.+
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~--------------------- 146 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSG--------------------- 146 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEE---------------------
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecC---------------------
Confidence 123456788889988877643 4678888888776655443211 10111100
Q ss_pred cccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccc--
Q 001358 698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT-- 775 (1092)
Q Consensus 698 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~-- 775 (1092)
.+.+.+-+.||.+....++............-......-+..-++...+..++-.+-+|.++--++............
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccccc
Confidence 011333344444444433311111100000000111112223344555555666677777776666544321100000
Q ss_pred -cccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe----CC-------eEEEEEcCCceeeEEecCCC
Q 001358 776 -TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GG-------VISLYIVMTFKTILTIMPPS 843 (1092)
Q Consensus 776 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s----dg-------~i~iwd~~~~~~~~~~~~~~ 843 (1092)
....-.-|.+. .-.-+++++..+.|.+.- ++ .|.++|+.+++.+.++.. .
T Consensus 227 t~~e~~~~WrPG-----------------G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~ 288 (342)
T PF06433_consen 227 TDAEKADGWRPG-----------------GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-E 288 (342)
T ss_dssp -HHHHHTTEEE------------------SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-E
T ss_pred CccccccCcCCc-----------------ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-C
Confidence 00000113222 223456666554444331 11 388999999999998873 2
Q ss_pred CCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCCceeeEeecc
Q 001358 844 PTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
..+.+++++.++..+|++.+ .++.+.+||..+|+.+.++.+
T Consensus 289 ~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 289 HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 45779999996666776554 578999999999999988874
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.55 E-value=8.4e-05 Score=87.55 Aligned_cols=251 Identities=14% Similarity=0.157 Sum_probs=147.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeee
Q 001358 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1092)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1092)
..|.++.|..+.+.++.+...|.|.+-|.++......-... ..|.+++|+||+..++..+..+++.+-... -.++.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTKD-FEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchh
Confidence 57999999999999999999999999988876554333333 348999999999999999998888765432 11110
Q ss_pred ecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEE
Q 001358 659 AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS 738 (1092)
Q Consensus 659 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~ 738 (1092)
...-+. ...+.+....+|++.....|.|. ...
T Consensus 145 E~~L~~------d~~~~sk~v~VGwGrkeTqfrgs------------------------------------------~gr 176 (1265)
T KOG1920|consen 145 EKPLDA------DDERKSKFVNVGWGRKETQFRGS------------------------------------------EGR 176 (1265)
T ss_pred cccccc------ccccccccceecccccceeeecc------------------------------------------hhh
Confidence 000000 00001111111111111111000 000
Q ss_pred EEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE
Q 001358 739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 818 (1092)
Q Consensus 739 ~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~ 818 (1092)
..+.-+... .. ..+. ......-..++|.-||+++|
T Consensus 177 ~~~~~~~~~--------------------------ek----------~~~~---------~~~~~~~~~IsWRgDg~~fA 211 (1265)
T KOG1920|consen 177 QAARQKIEK--------------------------EK----------ALEQ---------IEQDDHKTSISWRGDGEYFA 211 (1265)
T ss_pred hcccccccc--------------------------cc----------cccc---------hhhccCCceEEEccCCcEEE
Confidence 000000000 00 0000 00122235689999999999
Q ss_pred EEe-----C-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe---CCCeEEEEEcCC---ceeeEeecccc
Q 001358 819 SAS-----G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DDSTILIYNARS---SEVISKLEGHS 886 (1092)
Q Consensus 819 ~~s-----d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~---~~~~~~l~~h~ 886 (1092)
+.. + ..|++||-+ |..-..-....+.-.+++|-| .|.++|+-. .|+.|.+|.-+. |+....+....
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 853 4 679999987 544433333445557899999 888888753 455799998553 22233334344
Q ss_pred CCeEEEEEcCCCCEEEE---EeCCCcEEEEEcCCCceeeeeeeec
Q 001358 887 KRVTGLVFSDALNILVS---SGGDAQIFVWDVDGWGIQTCRSLQT 928 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s---~s~Dg~i~iwd~~~~~~~~~~~~~~ 928 (1092)
.+|..++|+.++..||+ ......|++|-+.+........+..
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~ 334 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQF 334 (1265)
T ss_pred cchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEec
Confidence 55999999999999998 4555569999999865444334433
No 314
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.54 E-value=1.5e-06 Score=83.78 Aligned_cols=209 Identities=14% Similarity=0.204 Sum_probs=126.1
Q ss_pred ceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001358 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~ 416 (1092)
|+.+.|+-+- .|+++..++.+.....-++.+.. .|.=.....+++. +..|+++-.+-+.+--++.+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~~~--~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPFKV--LAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCceee--eeccCCCCCcccccccCCceEecCC
Confidence 6667777664 57888777777777665554432 2221111122222 2235544444455556889999999
Q ss_pred CCEEEEEEccCCCCccceEEec-ccccceeEEEeeCCCCcEEEEEEe-----CCCcEEEEECCCCceeEEEecCCcceEE
Q 001358 417 KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~l~l~s~~-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1092)
||.+.+.+.+.-..+. ..+. .|.+. .+.+....+. .+.+++ .-+..++|+++..+.+..-......|.+
T Consensus 110 dg~~~v~s~~~~~~~~--~~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALM--SRIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhh--hhcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999987622211 1111 12221 1222333344 233222 2234566666544333222222334888
Q ss_pred EeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEec-CCCEEEEEecCCCCceeEEEEeCCC
Q 001358 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
++-+|... +.+++|+.||.+-+||++...... .+..|+.++..+.|+| ++..|++++. ++.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 88877644 688999999999999999875443 5677888999999999 5678888876 55699999654
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.51 E-value=1.9e-05 Score=88.85 Aligned_cols=136 Identities=13% Similarity=0.061 Sum_probs=90.4
Q ss_pred EecCCCEEEEEeCCeEEEEEcCC----c-eeeEEecCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCCcee-----
Q 001358 810 LSKNDAYLFSASGGVISLYIVMT----F-KTILTIMPPSPTATSLAFNPHDNNVIAIG-MDDSTILIYNARSSEV----- 878 (1092)
Q Consensus 810 ~s~dg~~l~~~sdg~i~iwd~~~----~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg-~~dg~v~iwd~~~~~~----- 878 (1092)
+.++|++... .++.|.+.|..+ + +.+..+. -......++++| |+++++++ ..+.+|.|+|+.+.+.
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 4557887665 467899999988 3 4444443 455677899999 77766654 5588999999988552
Q ss_pred -------eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------CceeeeeeeecCCCCcCCCCCceEEEE-
Q 001358 879 -------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG------WGIQTCRSLQTPDGVMTLAPSETHIQF- 944 (1092)
Q Consensus 879 -------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~v~~l~~- 944 (1092)
+.+.+-- ..-...+|.++|+...|..-|..|..|++.. ++. ....+....-+.. +-.+.-
T Consensus 361 ~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~-~~~v~~k~dV~y~----pgh~~~~ 434 (635)
T PRK02888 361 IKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEK-VDPIVQKLDVHYQ----PGHNHAS 434 (635)
T ss_pred CCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhcccc-CCcceecccCCCc----cceeeec
Confidence 3333322 2334578999999999999999999999986 111 1123333332222 223333
Q ss_pred -----ecCCCEEEEE
Q 001358 945 -----HKDQTRFLLV 954 (1092)
Q Consensus 945 -----s~dg~~la~~ 954 (1092)
.|||++|++.
T Consensus 435 ~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 435 MGETKEADGKWLVSL 449 (635)
T ss_pred CCCcCCCCCCEEEEc
Confidence 7899999883
No 316
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.50 E-value=4.1e-05 Score=86.15 Aligned_cols=182 Identities=12% Similarity=0.072 Sum_probs=117.4
Q ss_pred EecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC----eEEEEEcCCceeeEeec
Q 001358 810 LSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLE 883 (1092)
Q Consensus 810 ~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~ 883 (1092)
++|||+.+...+ .+.+.+.|.++.+...++.-.. ....++++| +++++++.+.+. ++..-+..+...+..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 567887765554 4778899999888777765332 456789999 888888776322 22222222211111111
Q ss_pred cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC----CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCC
Q 001358 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HET 957 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~ 957 (1092)
-- .+ -++.++|++... .++.|.+.|..+ +. .....+.... ....+++||||++++++ .+.
T Consensus 278 i~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIPVGK-------sPHGV~vSPDGkylyVanklS~ 343 (635)
T PRK02888 278 IA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVPVPK-------NPHGVNTSPDGKYFIANGKLSP 343 (635)
T ss_pred hH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEECCC-------CccceEECCCCCEEEEeCCCCC
Confidence 00 00 133457877665 367799999887 22 1122333332 35689999999999984 578
Q ss_pred cEEEEEcCCcee------------eeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001358 958 HLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 958 ~v~lwd~~~~~~------------~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~ 1009 (1092)
++.|+|+.+.+. ..+... .......+|.++|....|-.-|..|..|++..
T Consensus 344 tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999999987553 222221 34455678999999888899999999999987
No 317
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.48 E-value=0.00098 Score=64.98 Aligned_cols=136 Identities=13% Similarity=-0.019 Sum_probs=88.9
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC
Q 001358 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 579 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1092)
.+++.|+..+.+.--|..++........ +.++.+-+.- -|++++.+.. .+-+++.+.++|.....+.... .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~---~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILE---T 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehh---h
Confidence 4667777777777777777665554332 2233333322 4667777776 4459999999998888777654 2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE
Q 001358 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1092)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 646 (1092)
--......+++..+.+|+.|++.+..|..+...+...+..+.. ..+-+..|-...|.++...|.+
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceE
Confidence 2233456788999999999999999999999999887766553 2334455522333334444443
No 318
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.47 E-value=4.5e-07 Score=63.34 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=37.2
Q ss_pred ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001358 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd 914 (1092)
|+++.++.+|.+.|++|+|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 319
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.47 E-value=4.2e-07 Score=86.11 Aligned_cols=135 Identities=22% Similarity=0.273 Sum_probs=98.4
Q ss_pred hHHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001358 37 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELA 116 (1092)
Q Consensus 37 ~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~ 116 (1092)
+...++++|++||++.|++.+......-... ...+.|.|++|+|+|+|..++..+|+.+.|+++.|......+.++++.
T Consensus 4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~ 82 (145)
T PF10607_consen 4 ERKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3678999999999999999998752111111 123889999999999999999999999999999766543567788888
Q ss_pred HhhcccCccc--ccccccccCCChHHHHHHHHHHHhhcccCcccccccCCCCCc-cHHHHHHHHHHHHHH
Q 001358 117 QLLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNWQ 183 (1092)
Q Consensus 117 ~ll~~~~~~~--~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~Ll~qa~~~q 183 (1092)
.+|...+..+ ...+..+.+ .+.|+++.+.+.+.+-...- +| .+.|..++++....+
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~~--~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELLS--PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHcCCcccccchHHHHHhC--hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 8888877654 223232212 36788888888887655332 34 567888888776554
No 320
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.46 E-value=0.00017 Score=80.06 Aligned_cols=255 Identities=16% Similarity=0.222 Sum_probs=131.7
Q ss_pred cCCCceEEEEE--------cCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358 343 HPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 343 spdg~~llasg--------~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
|||++++|..- +..+.+.|+|+++++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 78998665522 123678889998876543 22225678889999999999998
Q ss_pred eCCCEEEEEEccCCCCccceEEecc-------c---------ccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358 415 YSKHIVQLYAYHGGSDARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~-------h---------~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
. ++.|.+++..++...+. +..| - -+.-..+.|||||+++.++.. .+..|..+.+.
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~-d~~~v~~~~~~----- 131 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF-DEREVPEYPLP----- 131 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE-E-TTS-EEEEE-----
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE-CCcCCceEEee-----
Confidence 5 56799999887743321 2222 0 112356889999995333322 23444444321
Q ss_pred EEEecCCc---ceEEEeecccCCccEEEEEecCC--eEEEEEcCCCCceE-Ee----cCCCCceEEEEEecCCCEEEEEe
Q 001358 479 YSFEGHGA---PVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARV-DY----DAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 479 ~~~~~~~~---~v~~i~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~-~~----~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
....... .+..+.+ |.+ |..+- .+.++|+.+++... .. .....-+..+.|+++++.++..-
T Consensus 132 -~~~~~~~~yp~~~~~~Y-Pk~-------G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~ 202 (353)
T PF00930_consen 132 -DYSPPDSQYPEVESIRY-PKA-------GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQW 202 (353)
T ss_dssp -EESSSTESS-EEEEEE---BT-------TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEE
T ss_pred -ccCCccccCCccccccc-CCC-------CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEE
Confidence 0111110 1222222 111 11111 35667777666532 21 23345688999999999444433
Q ss_pred cC-CCCceeEEEEeCCCCeEEEEEeeccccCCce---EEEEEc-CCCCEEEE-EeCCCe--EEEEECCCCceEEEEeCCC
Q 001358 549 TS-KEGESFLVEWNESEGAIKRTYQGLQLQHNSV---SVVHFD-TAKDQILA-AGDDHV--IKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 549 ~~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~l~~-~s~dg~--i~iwd~~~~~~~~~~~~~~ 620 (1092)
.+ ......+.+.|..++.......... ...| ....+. +++..++. ...+|. |++++..++... .+..
T Consensus 203 ~nR~q~~~~l~~~d~~tg~~~~~~~e~~--~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~-- 277 (353)
T PF00930_consen 203 LNRDQNRLDLVLCDASTGETRVVLEETS--DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTS-- 277 (353)
T ss_dssp EETTSTEEEEEEEEECTTTCEEEEEEES--SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS---
T ss_pred cccCCCEEEEEEEECCCCceeEEEEecC--CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-cccc--
Confidence 33 3345667788988876654443332 2222 244444 66655544 446665 444565555533 3322
Q ss_pred CCCCCc-eEEEccCCCEEEEE
Q 001358 621 GLPENP-RICFNKNGTLLAVI 640 (1092)
Q Consensus 621 ~~~~v~-~v~~s~~~~~l~~~ 640 (1092)
+.-.|. -+.++++++.+...
T Consensus 278 G~~~V~~i~~~d~~~~~iyf~ 298 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYFT 298 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEEE
T ss_pred CceeecccceEcCCCCEEEEE
Confidence 122343 36667766655433
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.2e-05 Score=80.82 Aligned_cols=251 Identities=13% Similarity=0.154 Sum_probs=147.3
Q ss_pred eecCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358 391 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
++.+|...|..++|||..+ +|..++.+..|+|.|+++...+. .+..| ..+++++|.-|... ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999877 78888999999999999976554 44456 78999999999876 8889999999999
Q ss_pred EECCCCce-eEEEec--CCcceEEEeeccc----CCccEEEEEecCCeEEEEEcCCCCc--eEEec-CCCCceEEEEEec
Q 001358 470 WDAVTGSR-TYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA--RVDYD-APGLGCTRMAYSA 539 (1092)
Q Consensus 470 wd~~~~~~-~~~~~~--~~~~v~~i~~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~-~~~~~i~~~~~s~ 539 (1092)
||++..+- +..+.+ ...+|..++..+. +.+.+++..+.+ +..|.+.-... ..... ...+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986542 223322 2234444432211 122344444433 34454432221 22222 2244566666666
Q ss_pred CCCEEEEEecCCCCceeEE----EEeCCCCeEEEEEe----ecccc-CCceEEEEEcCCCCEEEE-EeCCCeEEEEECCC
Q 001358 540 NGRRLFSCGTSKEGESFLV----EWNESEGAIKRTYQ----GLQLQ-HNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 609 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~----~~~~~-~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~ 609 (1092)
-.+.++.....+....+++ --|-.+|..+..-+ |.... ...-..+.-.+++++++. ++..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6666666554321111111 11222333221111 11000 001112222345566655 55778899999999
Q ss_pred CceEEEEeCCCCCCCCceEEEcc-C-CCEEEEEeCCCeEEEEECC
Q 001358 610 VQLLTTIDAGGGLPENPRICFNK-N-GTLLAVIANENRIKILETP 652 (1092)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~~~~~dg~i~iw~~~ 652 (1092)
++.++++.... .|..++... + +.+|++-++ ..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LTd-~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLTD-DRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhheec-ceEEEEecC
Confidence 99999998763 355555443 2 446666554 578887654
No 322
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=5e-06 Score=86.49 Aligned_cols=259 Identities=15% Similarity=0.106 Sum_probs=175.7
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC-CCcEEEEECC
Q 001358 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAV 473 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~ 473 (1092)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|-+.|.+++.+-|+. ++.|.+. |..++++|++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence 77778777655 567999999999999998765233333335668999999999999998 7888777 9999999988
Q ss_pred CCceeEEEecCCcceEEEeecccCCc--cEEEEEecCCeEEEEEcCCCCce--EEecCCCCceEEEEEecCCCEEEEEec
Q 001358 474 TGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
+-..+.-++-..-|=.+-.+...+|- .+-++.-.+|.+.++|-....+. ..-..|..+|..+.+.+-+..+++.-
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD- 163 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID- 163 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc-
Confidence 65544322211111111111111111 23344456788999987655433 34455778999999999999888764
Q ss_pred CCCCceeEEEEeCCC------CeEEEEE------eeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001358 550 SKEGESFLVEWNESE------GAIKRTY------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~------~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
..+.|..|.... .+..-.+ -+.........++.|+|++..+.+-+.|..|++++..+|+.++.+.
T Consensus 164 ---~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 164 ---ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ---ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 367899998763 1111111 1111123567889999999999999999999999999988765443
Q ss_pred CCC-------------------------------CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecc
Q 001358 618 AGG-------------------------------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 618 ~~~-------------------------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
... ....-..++|...|++|+-++-- .|++.++.+++..+.+.
T Consensus 241 E~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 241 EVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILG 314 (558)
T ss_pred ccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEec
Confidence 210 11123457888889999888775 48899999887766554
No 323
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=7e-07 Score=89.54 Aligned_cols=169 Identities=16% Similarity=0.117 Sum_probs=126.9
Q ss_pred ceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001358 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~ 416 (1092)
-+.++||-+-.-+-++.+.+..|-+-|+++|-... + ...+.|.++.|...+.++..|+.
T Consensus 214 a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcR 272 (425)
T KOG2695|consen 214 AWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCR 272 (425)
T ss_pred chhhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEeccc
Confidence 34457775432233445566789999999985432 1 25678999999999999999999
Q ss_pred CCEEEEEEccCCCC--ccceEEecccccceeEEEeeC-CCCcEEEEEEeCCCcEEEEECCCCce---eEEEecCCcceEE
Q 001358 417 KHIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYS 490 (1092)
Q Consensus 417 d~~i~iwd~~~~~~--~~~~~~l~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~ 490 (1092)
+|.|...|+..+.. ......+ .|...|+++.... +++ .|.+.+.+|+|++||.+--++ ++++.||-..-.-
T Consensus 273 ngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~ 349 (425)
T KOG2695|consen 273 NGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAY 349 (425)
T ss_pred CCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccc
Confidence 99999999986521 1111122 5889999998877 455 788899999999999886666 8889999776666
Q ss_pred EeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001358 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529 (1092)
Q Consensus 491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 529 (1092)
+-++..+....+++++.|...|+|.++.+....++....
T Consensus 350 l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 350 LPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred cccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 666666777799999999999999999887776665443
No 324
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.43 E-value=2.8e-06 Score=82.05 Aligned_cols=207 Identities=15% Similarity=0.175 Sum_probs=124.2
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce-eeEeecc-ccCCeEEEEEcCCCCEEEEEeC-----CCcE
Q 001358 838 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGG-----DAQI 910 (1092)
Q Consensus 838 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~-h~~~V~~l~~spdg~~l~s~s~-----Dg~i 910 (1092)
.+..|..+-.+-+.+- -+.-++++..||.+.+++.+.-. ...++.. |.+. -+......++.+.+++. -+..
T Consensus 84 ~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~ 161 (319)
T KOG4714|consen 84 VLAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNF 161 (319)
T ss_pred eeeccCCCCCcccccc-cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccce
Confidence 3333443333333444 46688999999999999877521 1111111 2221 11222234444443321 1235
Q ss_pred EEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-E-eCCcEEEEEcCCceeeeeeccCCCcCEEEEEEec
Q 001358 911 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC 988 (1092)
Q Consensus 911 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~ 988 (1092)
++|+++..+ ++.........|.+++-.|..+.+++ | .||.+.+||.+.......++..|..+|+.+.|.|
T Consensus 162 ~a~~~~p~~--------t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHp 233 (319)
T KOG4714|consen 162 YANTLDPIK--------TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHP 233 (319)
T ss_pred eeecccccc--------cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccC
Confidence 666666421 11111111124888999998777666 4 6789999999999888888889999999999998
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCceEEeec---cccccCCCCccCcccc------------eEE-EECCCCCCEEEEEeC
Q 001358 989 -DCRMVFTSFVDGTLSIHEASNLEVQCRIL---STAYLRPTTSCLHVYP------------HAI-AAHPLKPTQFAVGLT 1051 (1092)
Q Consensus 989 -dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~v~~------------~~~-~~~p~~~~~l~~~~~ 1051 (1092)
++..|+++++||.+--||..+--+-.... ...|+.. +++++ .++ +|+- -+..|++|++
T Consensus 234 k~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsg----D~v~s~i~i~~ll~~~~~SinsfDV-~g~~lVcgtd 308 (319)
T KOG4714|consen 234 KNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSG----DPVKSRIEITSLLPSRSLSINSFDV-LGPCLVCGTD 308 (319)
T ss_pred CCchheeEecCCCcEEEEcCCCceEEecCccccccccccC----CcccceEeeeccccccceeeeeeec-cCceEEeccc
Confidence 67899999999999999988633221111 1112222 22222 111 1222 2568999999
Q ss_pred CCcEEEEe
Q 001358 1052 NGEVYVIE 1059 (1092)
Q Consensus 1052 dg~v~~w~ 1059 (1092)
-+.|++.+
T Consensus 309 ~eaIyl~~ 316 (319)
T KOG4714|consen 309 AEAIYLTR 316 (319)
T ss_pred cceEEEec
Confidence 99999876
No 325
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.41 E-value=5.2e-06 Score=93.92 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=131.4
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEE
Q 001358 813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891 (1092)
Q Consensus 813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1092)
++..++.|+ ...+..+|+.+.+..+...-..+.++-+.. +++++.+|...|+|.+-|..+.+.++++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 334455554 677888999988887776655555655555 6789999999999999999999999999999999977
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC--CCEEEEEeCCcEE
Q 001358 892 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD--QTRFLLVHETHLA 960 (1092)
Q Consensus 892 l~~spdg~~l~s~s~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d--g~~la~~~d~~v~ 960 (1092)
+.. .|+.|+++|. |.-|+|||+..-+... +++.+.+ ..-+.|.|. .+..+++..|+..
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence 655 6889999986 4568999998733222 3333333 234677775 3344447888999
Q ss_pred EEEcCC---ceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001358 961 IYEAEE---LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus 961 lwd~~~---~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd 1006 (1092)
+-|..+ ...-.......+..+..+++|++|..++.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 888432 2111111223356699999999999999999999999997
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.39 E-value=8.7e-05 Score=87.45 Aligned_cols=282 Identities=11% Similarity=0.152 Sum_probs=159.5
Q ss_pred CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE
Q 001358 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
.+.|.++.|.-++.. +..+..+|.|.+-|.++..... ...-...|.+++||||++.++.
T Consensus 68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence 469999999999975 6667778999999988876553 2234578999999999999999
Q ss_pred EeCCCEEEEEEccCCCCccceEEecc---cccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEecCCcceE
Q 001358 414 AYSKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVY 489 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l~~---h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~ 489 (1092)
.+..+++.+-+-. -..+... .+.. ..+....+-|-....+ +-|+ .|....-+.... +.+.... ....=+
T Consensus 127 iT~~~tll~mT~~-f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~-~~~~~~ 199 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKD-FEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIE-QDDHKT 199 (1265)
T ss_pred EeCCcEEEEEecc-ccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchh-hccCCc
Confidence 9988877654432 1111110 0100 0111222333222211 0111 111111110000 0000001 111223
Q ss_pred EEeecccCCccEEEEE-----ecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC
Q 001358 490 SLCPHAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
+++| .+||+++++. ...+.|+|||-+ +.....-....+.-.+++|-|.|..+++.....+ +..|.++..+
T Consensus 200 ~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN- 274 (1265)
T KOG1920|consen 200 SISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN- 274 (1265)
T ss_pred eEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC-
Confidence 4566 6688888873 233789999876 3322232333334567999999999988775544 5568888743
Q ss_pred CeEEEEEeeccc-cCCceEEEEEcCCCCEEEE---EeCCCeEEEEECCCCceE--EEEeCCCCCCCCceEEEccC-CCEE
Q 001358 565 GAIKRTYQGLQL-QHNSVSVVHFDTAKDQILA---AGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKN-GTLL 637 (1092)
Q Consensus 565 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~---~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~-~~~l 637 (1092)
|-.-..|.-... ....+..++|+.++..|++ ......|++|-..+.... +.+..... .-+.|+|. ...+
T Consensus 275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L 350 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTL 350 (1265)
T ss_pred CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeE
Confidence 333232222111 1134899999999998887 455566999998775543 33333222 22778883 2334
Q ss_pred EEEeCCCeEEEEECC
Q 001358 638 AVIANENRIKILETP 652 (1092)
Q Consensus 638 ~~~~~dg~i~iw~~~ 652 (1092)
.+-..+|...+++..
T Consensus 351 ~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 351 HVLRESGQRLVRDFA 365 (1265)
T ss_pred EEEecCCcEEEEEEE
Confidence 444466666665543
No 327
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=0.00066 Score=66.11 Aligned_cols=115 Identities=15% Similarity=0.120 Sum_probs=80.9
Q ss_pred ecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEE
Q 001358 342 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 421 (1092)
Q Consensus 342 ~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~ 421 (1092)
.-+|.++++..|+..+.+.--|..+|+..-... -...|.+-+.- -|++++.|...|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i--------------------lg~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--------------------LGVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh--------------------hCceeeeeeEE-ECCEEEEEEccCcEE
Confidence 345556789999999999999999998765311 11222222222 477899999999999
Q ss_pred EEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001358 422 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 422 iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
+-+.++|+.......+..- .+ .....+++. ++..|+.|++.+.-|..+..++...+
T Consensus 77 fl~~~tGs~~w~f~~~~~v--k~-~a~~d~~~g--lIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILETV--KV-RAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EEEecchhheeeeeehhhh--cc-ceEEcCCCc--eEEEecCCCcEEEecccccceEEecc
Confidence 9999999766543322211 11 234456777 89999999999999999988887654
No 328
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.38 E-value=7.9e-07 Score=62.10 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=35.3
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEe
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 363 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd 363 (1092)
++++++.+|++.|++++|+|++. ++++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 46789999999999999999998 799999999999997
No 329
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.37 E-value=0.00029 Score=78.19 Aligned_cols=303 Identities=12% Similarity=0.103 Sum_probs=156.0
Q ss_pred ecCCCEEEEEecCC-----CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 001358 538 SANGRRLFSCGTSK-----EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 538 s~dg~~l~~~~~~~-----~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1092)
|||+++++...... +..+.++++|+.+++....... . ..+....|+|+|+.++... ++.|++++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 57888877643211 1245689999999877665554 2 5788899999999988876 47899999888744
Q ss_pred EEEEeCCCC----------------CCCCceEEEccCCCEEEEEeCC-CeEEEEECC---CCCeeeecccccccceeeee
Q 001358 613 LTTIDAGGG----------------LPENPRICFNKNGTLLAVIANE-NRIKILETP---ESNSVDAAGVLSDNLRKLSV 672 (1092)
Q Consensus 613 ~~~~~~~~~----------------~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~~---~~~~~~~~~~~~~~v~~~~~ 672 (1092)
.+ +...+. ...-..+.|||||++|+....| ..+..+.+. .... ....+..+.+
T Consensus 76 ~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~Y 148 (353)
T PF00930_consen 76 TQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRY 148 (353)
T ss_dssp EE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE-
T ss_pred EE-eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCccccccc
Confidence 33 322220 1223578999999999887553 333333222 1110 0001111111
Q ss_pred cCCcccccccccCCceeecCCCCCCcccceeeccccc--cceeceeeccCccceecccC--CccccccEEEEEEecCCcE
Q 001358 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK--SEVEKPLFARPSECQSLLLP--SKVKANKISRLTYNNGGQA 748 (1092)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~--i~~w~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~g~~ 748 (1092)
. ..|..... +.++++..++.. .+..+ .......+..+.|.++++.
T Consensus 149 P----------------------------k~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~ 197 (353)
T PF00930_consen 149 P----------------------------KAGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKR 197 (353)
T ss_dssp -----------------------------BTTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEE
T ss_pred C----------------------------CCCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcE
Confidence 1 11111122 223343322221 11111 1224567889999999984
Q ss_pred EEEeecC---CeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe-cCCCEEEEEe--C
Q 001358 749 IFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--G 822 (1092)
Q Consensus 749 l~~~~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s-~dg~~l~~~s--d 822 (1092)
++..-.+ ..+.+.. +|+.++.+.........+--.......+. +++..++..+ +
T Consensus 198 l~~~~~nR~q~~~~l~~--------------------~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 198 LWVQWLNRDQNRLDLVL--------------------CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp EEEEEEETTSTEEEEEE--------------------EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred EEEEEcccCCCEEEEEE--------------------EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 4444332 2233322 23333332222211111111222355655 7776666665 4
Q ss_pred C--eEEEEEcCCceeeEEecCCCCCeEE-EEEcCCCCCEEEEEeCCC----eEEEEEcCCceeeEeeccccCCeEEEEEc
Q 001358 823 G--VISLYIVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFS 895 (1092)
Q Consensus 823 g--~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 895 (1092)
| .|.+++...+.. ..+....-.|+. +.++++++.+.+++..++ .++.-++.++..+..+....+.-..+.||
T Consensus 258 G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S 336 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS 336 (353)
T ss_dssp SSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred CCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence 4 477777776663 455545556744 678884455555666533 56666677233445555433333689999
Q ss_pred CCCCEEEEE
Q 001358 896 DALNILVSS 904 (1092)
Q Consensus 896 pdg~~l~s~ 904 (1092)
|+|++++-.
T Consensus 337 pdg~y~v~~ 345 (353)
T PF00930_consen 337 PDGKYYVDT 345 (353)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEEE
Confidence 999998754
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.36 E-value=8.8e-05 Score=82.42 Aligned_cols=138 Identities=10% Similarity=0.071 Sum_probs=101.1
Q ss_pred CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|.--+++..++ +++.|+.-|.+.+++-.+|+.+... ..+-.+.+..+..|++..++|.|
T Consensus 34 ~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvAag 94 (726)
T KOG3621|consen 34 ARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVAAG 94 (726)
T ss_pred ceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhhhh
Confidence 3666667777888 6899999999999999888776521 22345667778899999999999
Q ss_pred eCCCEEEEEEccCCCCccceEE---ecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC----ceeEEEecCCcc
Q 001358 415 YSKHIVQLYAYHGGSDARQQLE---IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHGAP 487 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~---l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~ 487 (1092)
+..|.|.++-++.+........ -..|...|++++|++|+. .+++|...|+|..-.+.+. ...+.+......
T Consensus 95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~ 172 (726)
T KOG3621|consen 95 TASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSE 172 (726)
T ss_pred cCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCcc
Confidence 9999999998887433222111 123778999999999999 7999999999999887772 112333334556
Q ss_pred eEEEee
Q 001358 488 VYSLCP 493 (1092)
Q Consensus 488 v~~i~~ 493 (1092)
|..+..
T Consensus 173 IVQlD~ 178 (726)
T KOG3621|consen 173 IVQLDY 178 (726)
T ss_pred eEEeec
Confidence 655554
No 331
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=2.3e-06 Score=87.14 Aligned_cols=167 Identities=17% Similarity=0.246 Sum_probs=116.9
Q ss_pred HHHHHHHHHhhhhcChhHHHHHHHHhcCCC--------hhHHHHHHHhcCcCHHHHHHHhccC-CCcCCccccchhhhHh
Q 001358 6 KDLVFLILQFLNEEGFTESAHMLERESRFY--------FDMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFEI 76 (1092)
Q Consensus 6 ~~~~~li~q~L~~~G~~~s~~~L~~Esg~~--------~~~~~~~~~i~~G~w~~~~~~l~~~-~~~~~~~~~~~~~~~i 76 (1092)
+-+-|+|..||..+||.++|..|-++|.+. .++...+++|++|+...|+..++.- ..+. +..-.+-|.+
T Consensus 116 ~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~l 193 (389)
T KOG0396|consen 116 NKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhHH
Confidence 446789999999999999999999999974 2378889999999999999887542 1111 1122367999
Q ss_pred HHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCc
Q 001358 77 RKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANP 156 (1092)
Q Consensus 77 ~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~ 156 (1092)
+.|.|+||+..+++.+|+.+.|+.|.|........++....++.++...+... +.+-....| ++.|+.++..+.
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sk---y~~l~~~~r---w~~l~~lF~s~a 267 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSK---YLNLLTADR---WSVLADLFLSEA 267 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCccc---ccCcccHHH---HHHHHHHhhHHH
Confidence 99999999999999999999999999998777888898888998865432211 111112223 233333333222
Q ss_pred ccccccCCCCCccHHHHHHHHHHHHHHH
Q 001358 157 ILQGKLKFPSIKRQRLRRLINQSLNWQH 184 (1092)
Q Consensus 157 ~~~~~~~~~~~p~~rL~~Ll~qa~~~q~ 184 (1092)
. .-..+|+-| +|.++|+--+..|.
T Consensus 268 ~--~l~~i~~~~--~L~~~l~~GLsalK 291 (389)
T KOG0396|consen 268 L--KLFGIPINP--ALTIYLQAGLSALK 291 (389)
T ss_pred H--HHhCCCCCc--HHHHHHHhhhhhcc
Confidence 1 112223222 48888887777774
No 332
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=1.7e-06 Score=86.88 Aligned_cols=151 Identities=15% Similarity=0.156 Sum_probs=112.2
Q ss_pred EEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-----eeeEeeccccCCeEE
Q 001358 817 LFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-----EVISKLEGHSKRVTG 891 (1092)
Q Consensus 817 l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-----~~~~~l~~h~~~V~~ 891 (1092)
+++|.+-.+-+-++++|-. +.|. ..+.|.++.|.. .+.++..|+.+|.|..+|++.+ .+...+. |.+.|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence 4455567788888887643 3333 567888899987 7889999999999999999874 3555665 9999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCcee
Q 001358 892 LVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC 969 (1092)
Q Consensus 892 l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~ 969 (1092)
+..-. ++++|.+.+.+|.|++||+..-+... -+...+||......+ -+...+....+++ |.|-..+||.+..|..
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~--~V~qYeGHvN~~a~l-~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKK--SVMQYEGHVNLSAYL-PAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhccc--ceeeeeccccccccc-ccccccccceEEEccCeeEEEEEecccCce
Confidence 88776 78899999999999999998743221 367777776522222 2234555555655 7888999999999998
Q ss_pred eeeec
Q 001358 970 LKQWF 974 (1092)
Q Consensus 970 ~~~~~ 974 (1092)
+.+..
T Consensus 381 l~tip 385 (425)
T KOG2695|consen 381 LCTIP 385 (425)
T ss_pred eeccC
Confidence 88754
No 333
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.31 E-value=0.0023 Score=68.28 Aligned_cols=278 Identities=13% Similarity=0.126 Sum_probs=139.5
Q ss_pred eecCCCceEEEEEcCcCc--EEEEecCCCCceeeeeeeeeecccccceeEEeeecCCC-CcEEEEEECCCCCEEEEEeCC
Q 001358 341 DFHPVQHTLLLVGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSK 417 (1092)
Q Consensus 341 ~~spdg~~llasg~~d~~--i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~las~~~d 417 (1092)
+|.+||++||.++..||. +.+-|+.+++..+ |+... .......++|+++.++.....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence 689999888888877765 6666888887664 33332 222246778999998777666
Q ss_pred CEEEEEEccCCCCccceEEecccccceeEEEee--CCCCcEEEEEEe----------------------CCCcEEEEECC
Q 001358 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCG----------------------DDKTIKVWDAV 473 (1092)
Q Consensus 418 ~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s--~d~~~l~l~s~~----------------------~d~~i~vwd~~ 473 (1092)
..|+--|+++.+.. . .+......+-...|. .|+. .++..- ..+.|.--|+.
T Consensus 102 ~~l~~vdL~T~e~~-~--vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEER-V--VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EE-E--EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEE-E--EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 78888899987532 2 233344444445553 4555 333221 12346666888
Q ss_pred CCceeEEEecCCcceEEEeecccCCccEEEEEec---CCe-EEEEEcCCCCce-EEecC--CCCceEEEEEecCCCEEEE
Q 001358 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGK-IKAWLYDSLGAR-VDYDA--PGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~-i~vwd~~~~~~~-~~~~~--~~~~i~~~~~s~dg~~l~~ 546 (1092)
+|+....+. -...+..+.|+|.. ..+|+-|-. +.. -|+|-+++.... ..+.. ....+..=-|.|||..+..
T Consensus 177 tG~~~~v~~-~~~wlgH~~fsP~d-p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 177 TGERKVVFE-DTDWLGHVQFSPTD-PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp T--EEEEEE-ESS-EEEEEEETTE-EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCceeEEEe-cCccccCcccCCCC-CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 887654443 55667778887653 234444322 221 366765543322 22221 2224555568999998876
Q ss_pred Eec-CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC----------------CeEEEEECCC
Q 001358 547 CGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNK 609 (1092)
Q Consensus 547 ~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~ 609 (1092)
.+. .+..+..|.-+|+.+++....... .......-++|+++++-=+.| .-|++++++.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~ 329 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA 329 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTT
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc
Confidence 544 344466788899998876543332 234455667888777652222 2567788887
Q ss_pred CceEEEEeCC--------CCCCCCceEEEccCCCEEEEEeC-CCeEEEEE
Q 001358 610 VQLLTTIDAG--------GGLPENPRICFNKNGTLLAVIAN-ENRIKILE 650 (1092)
Q Consensus 610 ~~~~~~~~~~--------~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~ 650 (1092)
+......... .....-....|+|||++++..++ .|...||-
T Consensus 330 ~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 330 GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 6654322211 00011256899999999887765 56665554
No 334
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=5.1e-05 Score=78.27 Aligned_cols=250 Identities=12% Similarity=0.099 Sum_probs=141.5
Q ss_pred eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
.+.|.+|...|..++|||..+=|+..++.+..|+|.|+++...+.. +..| ..+.+++|.-
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDl 245 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDL 245 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeecc
Confidence 4577889999999999998876789999999999999999877754 3334 7899999998
Q ss_pred CC-CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEe------eCCCCcEEEEEEeCCCcEEEEECCC--Cce
Q 001358 407 DG-SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAPCKQISVITCGDDKTIKVWDAVT--GSR 477 (1092)
Q Consensus 407 dg-~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~------s~d~~~l~l~s~~~d~~i~vwd~~~--~~~ 477 (1092)
|. .+|..|...|.|.|||+...+.......-.-...+|..++. .+-|. +++....+ +..|++.- +..
T Consensus 246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECL 321 (463)
T ss_pred CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCC
Confidence 65 56667778999999999865432211111112234444433 23344 34444433 55666432 111
Q ss_pred eEEEe-cCCcceEEEeecccCCccEEEEEecCCe---EE---E-EEcCCCCceEE-ecCC-CC------ceEEEEEecCC
Q 001358 478 TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGK---IK---A-WLYDSLGARVD-YDAP-GL------GCTRMAYSANG 541 (1092)
Q Consensus 478 ~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~---i~---v-wd~~~~~~~~~-~~~~-~~------~i~~~~~s~dg 541 (1092)
...++ +..+...++...+..+ ..|++.-.+.+ ++ . -|...+..+.. ...+ +. .-..+.-.++.
T Consensus 322 p~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred CcccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 22111 2244455555544322 34444433211 00 0 01111111110 0000 00 01122234566
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 001358 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~ 608 (1092)
++++..+. ..+.+.+||+.+++.++++.... +|..++... ++.-++..-.|..++||..+
T Consensus 401 n~iv~~gd---~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 401 NYIVVVGD---STNELILQDPHSFEVVQTLALSE----PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cEEEEecC---CcceeEEeccchhheeeecccCc----ceeecceeecCCcchhhheecceEEEEecC
Confidence 66665543 46779999999999999887643 666665443 33334444455678887654
No 335
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.00011 Score=83.27 Aligned_cols=207 Identities=15% Similarity=0.175 Sum_probs=133.0
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCC-eEEEEEcCCCCEEEEEeCCCc-----EEEEEcCCCceee-
Q 001358 850 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQT- 922 (1092)
Q Consensus 850 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s~s~Dg~-----i~iwd~~~~~~~~- 922 (1092)
++++ ++..+|.|+.+|.|.+.+-. -+.+..++++... |+.+-...+..+|++.+.|+. |+||+++..+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 67799999999999888643 3445777777766 555554445579999988765 9999998653333
Q ss_pred eeee---ecCC-CCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcC--Cceeeee-eccCCCcCEEEEEEecCCCEEE
Q 001358 923 CRSL---QTPD-GVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE--ELTCLKQ-WFPISSVPISQATFSCDCRMVF 994 (1092)
Q Consensus 923 ~~~~---~~~~-~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~--~~~~~~~-~~~~h~~~v~~l~fs~dg~~l~ 994 (1092)
..++ .... .......++.+++.|.+-+.+|+| .+|.|..+.-. ...-.+. ....-..+|+.++|..|++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 3333 2111 111112468999999999999997 77888888532 1111111 1112378999999999998744
Q ss_pred EEeCCCcEEEEECCCCce-EEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCccccC
Q 001358 995 TSFVDGTLSIHEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1070 (1092)
Q Consensus 995 t~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~ 1070 (1092)
.+..-..|.+|.+.+... .+... . ++ +..-|.++++.. ..|++++ +..|.+|+.++.++.|+..
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld------~--~G--~~lnCss~~~~t-~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLD------N--NG--ISLNCSSFSDGT-YQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEecceeEEEEecCCCcceeeec------c--CC--ccceeeecCCCC-ccEEEec-CceEEEEcCCCcceeeeec
Confidence 444456799999984331 21122 1 12 333477788632 2355553 5578999999988888654
No 336
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=4.1e-05 Score=86.05 Aligned_cols=188 Identities=12% Similarity=0.123 Sum_probs=129.6
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001358 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 923 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~ 923 (1092)
..++|++++ +++++-|+.+|.|++++... .. .+...|+.. ..+|.+++|||.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 456778885 47999999999999999874 33 344446554 56899999999999999999888653332
Q ss_pred eeeecCCCCcCCCCCceEEEEecC-----CCEEEEEeCCcEEEEEcCCc-eeeeeeccCCCcCEEEEEEecCCCEEEEEe
Q 001358 924 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 924 ~~~~~~~~~~~~~~~v~~l~~s~d-----g~~la~~~d~~v~lwd~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s 997 (1092)
.-++ .++.+++++|| .+.+++|+...+.++.-.=. .........-.++|.++.| .|.++|=++
T Consensus 109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence 2221 25889999998 45566654433777754311 1111123334789999998 477888887
Q ss_pred CCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358 998 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 998 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.+| |+|||+.++..+..+.+....+. ....+..+.|.+ ...|+.| ...+|++..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQD--EDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecC--CCeEEEe-cCCeEEEEEEe
Confidence 665 89999999999888775442222 235556678886 3556555 67788888887
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00042 Score=78.85 Aligned_cols=202 Identities=11% Similarity=0.114 Sum_probs=136.3
Q ss_pred EEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCC-eEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCc----
Q 001358 808 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDS-----TILIYNARSS---- 876 (1092)
Q Consensus 808 ~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~---- 876 (1092)
-++++.+..++.|+ +|.|.+.+- ..+.++.++.+... +..+-... +..+|++.+.|+ .++||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678888888887 688877774 34555777777766 44444443 557888877775 5899998643
Q ss_pred --eee--Eeecc-----ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC
Q 001358 877 --EVI--SKLEG-----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 877 --~~~--~~l~~-----h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 947 (1092)
.++ .++.+ ...++.+++.|.+-+.+|.|-.+|.|..+.-+--..+..+..-...+. .+|+.+++..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 223 12222 346788999999999999999999998885432221112222222332 36999999999
Q ss_pred CCE-EEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEee
Q 001358 948 QTR-FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 948 g~~-la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
++. +.++.-..|.+|.+....+.......|+....|..|++....+++++ +..+.+|+.+.......|
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 988 45567788999999844433444666788999999887655355454 457999999855444333
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.11 E-value=0.0038 Score=72.52 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=80.0
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCC------ceE--EEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001358 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGL------GCT--RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------~i~--~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
..++.++.++.+.-.|..+++....+..... .+. .+++ .++..++.+.. ++.|+-+|..+|+.+-.+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 3566777788888889888877766544322 000 1111 12245555543 667999999999998776
Q ss_pred eecccc--CCceE-EEEEcCCCCEEEEEe---------CCCeEEEEECCCCceEEEEeCCCCCC----------------
Q 001358 572 QGLQLQ--HNSVS-VVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLP---------------- 623 (1092)
Q Consensus 572 ~~~~~~--~~~v~-~~~~~~~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~---------------- 623 (1092)
...... ...+. ...+. +..++.++ .+|.++.+|..+|+.+..........
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 643300 00011 11122 24555554 36889999999999988776531100
Q ss_pred --CC-ceEEEccCCCEEEEEeCCC
Q 001358 624 --EN-PRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 624 --~v-~~v~~s~~~~~l~~~~~dg 644 (1092)
.+ ...++.+.+..+++++.++
T Consensus 215 g~~vw~~pa~d~~~g~V~vg~~~g 238 (488)
T cd00216 215 GGTSWASPTYDPKTNLVYVGTGNG 238 (488)
T ss_pred CCCccCCeeEeCCCCEEEEECCCC
Confidence 01 1345555567777777665
No 339
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.09 E-value=6.5e-05 Score=85.40 Aligned_cols=187 Identities=14% Similarity=0.116 Sum_probs=142.8
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001358 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 536 (1092)
.++.|+....+..+|+.+.+..+...-....|.-|+. +++++.+|...|+|.+-|..+.+.+.++..|.+.+. .
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--D 222 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--D 222 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeecccccee--e
Confidence 5777888888999999999888777655555766654 668999999999999999999999999999998885 4
Q ss_pred EecCCCEEEEEecCCC-----CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCC-
Q 001358 537 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK- 609 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~- 609 (1092)
|+-.|+.|++||.+.. .|..|.+||+++.+.+..+.-+. ++ .-+.|.|. ...+++++..|...+-|..+
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---Cc-hhhhhcccccceEEEEecccceeecccccc
Confidence 5667999999987553 35678999999888776665544 22 45667776 35678888899999988432
Q ss_pred Cce-EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358 610 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 610 ~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
+.+ ......+...+.+..++++++|..++.+..+|.|.+|.-..
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence 111 12222222234588999999999999999999999998443
No 340
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.08 E-value=2e-06 Score=66.34 Aligned_cols=53 Identities=34% Similarity=0.595 Sum_probs=42.6
Q ss_pred hHHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCCCH
Q 001358 37 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI 90 (1092)
Q Consensus 37 ~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~ 90 (1092)
++..++++|++|+|++|++.+...........+ .+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 478899999999999999999876433222222 48999999999999998764
No 341
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.08 E-value=0.00082 Score=78.38 Aligned_cols=222 Identities=14% Similarity=0.100 Sum_probs=121.6
Q ss_pred CCeEEEEEcCCCCCEEEEEe------CCC--eEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC-CcEEEEE
Q 001358 844 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWD 914 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D-g~i~iwd 914 (1092)
..+.+.++|| +++.+|... .|+ .+.+++.. +.......+. ..+.-.|+|||+.|++.+.. ..+++.+
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999 777776654 244 45555542 3332223332 37889999999988887643 2233332
Q ss_pred cCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEE---EEcCCcee-e---eeeccCCCcCEEEEEEe
Q 001358 915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTC-L---KQWFPISSVPISQATFS 987 (1092)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~l---wd~~~~~~-~---~~~~~~h~~~v~~l~fs 987 (1092)
-..........+..........+.|..+.|||||+.+|...+++|++ -....|+. + ..+..+-...+.++.|.
T Consensus 426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 21111000000110000001123699999999999999966788887 44445541 1 11122223446889999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCcc
Q 001358 988 CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1067 (1092)
Q Consensus 988 ~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~ 1067 (1092)
.++.++ ++..++...+|.+.-............+. .. ..+++..| ..+.++..+|.+.+=.-......|
T Consensus 506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~-----~~--v~~vaa~~---~~iyv~~~~g~~~l~~~~~~~~~W 574 (591)
T PRK13616 506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLS-----AP--VVAVAASP---STVYVTDARAVLQLPNSDSGDQYW 574 (591)
T ss_pred cCCEEE-EEecCCCCceEEEecCCccccccCCCCcc-----Cc--eEEEecCC---ceEEEEcCCceEEecCCCCCCCCc
Confidence 999855 55555555566554332221111111111 11 24566665 356677777765555444556679
Q ss_pred ccCCCCCcccCCC
Q 001358 1068 AVLPPDEIVGDQP 1080 (1092)
Q Consensus 1068 ~~~~~~~~~~~~~ 1080 (1092)
...|+..-.+..|
T Consensus 575 ~ev~~l~g~~~~p 587 (591)
T PRK13616 575 REVPGLMGPRAAP 587 (591)
T ss_pred eECccccCCCccc
Confidence 8888776555444
No 342
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00043 Score=78.24 Aligned_cols=186 Identities=13% Similarity=0.142 Sum_probs=124.2
Q ss_pred cEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001358 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
.+.+.+++ ++.++.|+.+|.+++++.+.... +. + .|... ..+|.
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~------------------------~~-~---~~s~~------~~~Ge 84 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNPK------------------------TN-F---DHSSS------ILEGE 84 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCccc------------------------cc-c---ccccc------ccCCc
Confidence 34444443 56688888999999987654310 00 0 02211 55899
Q ss_pred EEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC----CCCEEEEEeCCCeEEEEEcCCc--eeeEeeccccCC
Q 001358 816 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKR 888 (1092)
Q Consensus 816 ~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~ 888 (1092)
++++++ ||+|.|-.+.+.+...++. ...++.+++++|+ ..+.+++|+.-| +.++.-.-- +.-..+..-.++
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 999999 6999999998888777665 4568999999993 256888899888 777753321 111134456789
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcC
Q 001358 889 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 965 (1092)
Q Consensus 889 V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~ 965 (1092)
|.++.|. |+++|-++.+| |+|||+..+.... .++.+............+.|.++.+ |+.|...+|+|..+.
T Consensus 163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred eEEEEec--CcEEEEecCCC-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 9999995 88999999888 9999999865333 2222222222122345677766655 566777788888877
No 343
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.01 E-value=0.032 Score=64.99 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=43.3
Q ss_pred CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccc
Q 001358 823 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 885 (1092)
Q Consensus 823 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 885 (1092)
|.+.-+|+.+++..-+.............. .+.+++.++.+|.++.+|.++|+.+.+.+-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 568888999998887665333222222222 3447777888999999999999999887643
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.98 E-value=0.00064 Score=75.89 Aligned_cols=198 Identities=19% Similarity=0.156 Sum_probs=118.6
Q ss_pred cceeEecccCCCCceEEeecCCCceEEEEEcCc---CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEE
Q 001358 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d---~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~ 400 (1092)
....+.+..-...+..-+|+|+++.+....-.. ..+.++|+++++.....+ -.+.-.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~ 241 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNG 241 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccC
Confidence 344455665566888899999998644442222 359999999998765433 223334
Q ss_pred EEEECCCCCEEEEEe-CCC--EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCc--EEEEECCCC
Q 001358 401 RVVWSPDGSLLGVAY-SKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTG 475 (1092)
Q Consensus 401 ~l~~spdg~~las~~-~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~ 475 (1092)
..+|||||++||.+. .|| .|.+.|+.++...+ +..-.+.-+.=.|+|||++ ++.+.+..|. |.+.|++.+
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence 568999999998774 444 47777887765222 3333333446789999996 3344444554 556676665
Q ss_pred ceeEEEecCCcceEEEeecccCCccEEEEEecC-Ce--EEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
.. ..+......-. ....++||.+++..+.. |. |.+.|+.+... ..............+.++|+.++..+..
T Consensus 317 ~~-~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 317 QV-TRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ce-eEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence 54 33322221111 23346788888777643 44 55555555543 2222223334456788899888876643
No 345
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.96 E-value=0.013 Score=67.03 Aligned_cols=252 Identities=14% Similarity=0.084 Sum_probs=138.4
Q ss_pred CceEEeecCCCceEEEEEcCcC----cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.+...++||||++++.+-+..| ++++.|+++|+.+.. .+ .. ..-..++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEE
Confidence 3446789999997655545544 499999999976643 11 11 112239999999988
Q ss_pred EEEeCC-----------CEEEEEEccCCCCccceEEecccccc--eeEEEeeCCCCcEEEEEEeCC--CcEEEEECCCC-
Q 001358 412 GVAYSK-----------HIVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGDD--KTIKVWDAVTG- 475 (1092)
Q Consensus 412 as~~~d-----------~~i~iwd~~~~~~~~~~~~l~~h~~~--v~~~~~s~d~~~l~l~s~~~d--~~i~vwd~~~~- 475 (1092)
+....+ ..|+.|++.++..-. ...+.+.... ...+..++|++++++.+.+.. ..+.+-|...+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 776432 247777877654321 1234443333 567889999996333333322 35777788775
Q ss_pred ---ceeEEEecCCcceE-EEeecccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCCCCceEEEEEecCCCEEE
Q 001358 476 ---SRTYSFEGHGAPVY-SLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 476 ---~~~~~~~~~~~~v~-~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
.....+......+. .+... ++.+++... ..+.|...++..... ...+..+...+.-..+...+.+|+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 23344433333333 33321 333444332 235676677777653 224444444333334445566666
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE--Ee--CCCeEEEEECCCCceEE
Q 001358 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AG--DDHVIKIWDMNKVQLLT 614 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s--~dg~i~iwd~~~~~~~~ 614 (1092)
.... .++...|++++...+.....+.... .+.|..+...++++.+.. .| .-++++.||+.+++...
T Consensus 341 l~~~-~~~~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 341 LSYR-ENGSSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEE-ETTEEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEE-ECCccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 5543 3457789999998455555554443 355666666666665543 22 34678888988877643
No 346
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.94 E-value=0.013 Score=62.87 Aligned_cols=228 Identities=12% Similarity=0.049 Sum_probs=112.7
Q ss_pred EEECCCCCEEEEEeC---CCEEEEEEccCCCCccceEEecccc-cceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce
Q 001358 402 VVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1092)
Q Consensus 402 l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 477 (1092)
=+|.+||+.|+.++. ...+.+-|+++++..+ |.... ........+|+++ .++-......|+--|+++.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcE
Confidence 367899988887765 4468888999976443 33332 2233466788888 454444556888899999887
Q ss_pred eEEEecCCcceEEEeecccCCccEEEEEec----------------------CCeEEEEEcCCCCceEEecCCCCceEEE
Q 001358 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISV----------------------DGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~----------------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 535 (1092)
...+......+-...+..+.|+..++..-. ...|.-.|+.+++....+. ....+..+
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~ 193 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV 193 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence 666666666666666665667666554321 1234445666655444433 44567788
Q ss_pred EEecCCCE-EEEEecCCCCce---eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-----CCCeEEEEE
Q 001358 536 AYSANGRR-LFSCGTSKEGES---FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----DDHVIKIWD 606 (1092)
Q Consensus 536 ~~s~dg~~-l~~~~~~~~~~~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-----~dg~i~iwd 606 (1092)
.|+|.... |..|.. +..+. .|.+.+.. |...+.+..+. ....+..=.|.|||..+.--+ .+..|.-+|
T Consensus 194 ~fsP~dp~li~fCHE-Gpw~~Vd~RiW~i~~d-g~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d 270 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHE-GPWDLVDQRIWTINTD-GSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYD 270 (386)
T ss_dssp EEETTEEEEEEEEE--S-TTTSS-SEEEEETT-S---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-
T ss_pred ccCCCCCCEEEEecc-CCcceeceEEEEEEcC-CCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeC
Confidence 99996554 445543 32222 34444433 33333333322 123455557999998876522 345677788
Q ss_pred CCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001358 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
+.+++.......+ .....-.++||++++-=+.|
T Consensus 271 ~~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 271 PDTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 8887665433322 23345556788877654444
No 347
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.91 E-value=0.0054 Score=67.87 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=79.8
Q ss_pred ceEEEEecC-CCEEEEE-----eCCc----EEEEEcCCce--eeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001358 939 ETHIQFHKD-QTRFLLV-----HETH----LAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus 939 v~~l~~s~d-g~~la~~-----~d~~----v~lwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd 1006 (1092)
..++.||-. ...+.+. .+|. -.+|+....+ ++..........|.+++++|+...|+.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 467777763 3334331 2332 5577776553 23333345688999999999999999999999999999
Q ss_pred CCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358 1007 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
...+.....- ..+.|..++||| ++..+++|+..|.+.+||+.
T Consensus 288 ~~~~~t~~~k------------a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 288 TTRGVTLLAK------------AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCCeeeeee------------ecccceEEEEcC-CCcEEEEEcCCceEEEEEee
Confidence 9888444221 124566799999 58999999999999999974
No 348
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.91 E-value=0.0033 Score=69.54 Aligned_cols=245 Identities=13% Similarity=0.157 Sum_probs=132.2
Q ss_pred cEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001358 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
.|..+.|+++...++++...|.+.+|.+..++......... -..+.+.+-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~----------------------------~~~~~~~~~-- 52 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPP----------------------------DLDYNFRRF-- 52 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------------------------------S---
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCc----------------------------ccCcccccc--
Confidence 47889999998899999999999999988764321000000 000000000
Q ss_pred EEEEEeCCeEEEEEcCC---------ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEe--ecc
Q 001358 816 YLFSASGGVISLYIVMT---------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEG 884 (1092)
Q Consensus 816 ~l~~~sdg~i~iwd~~~---------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l~~ 884 (1092)
...++.-.+-|+.. ......+....++|++++.|. =-++|+|..+|.+.|.|++....+.. +..
T Consensus 53 ---~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~ 127 (395)
T PF08596_consen 53 ---SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRE 127 (395)
T ss_dssp ----GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred ---cccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccc
Confidence 00000111112111 122333444578999999985 44999999999999999987776544 222
Q ss_pred ------ccCCeEEEEEcC-----CC---CEEEEEeCCCcEEEEEcCC--CceeeeeeeecCCCCcCCCCCceEEE-EecC
Q 001358 885 ------HSKRVTGLVFSD-----AL---NILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQ-FHKD 947 (1092)
Q Consensus 885 ------h~~~V~~l~~sp-----dg---~~l~s~s~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~-~s~d 947 (1092)
....|+++.|+. |+ -.|+.|...|.+.+|.+-- +..-..........+. +.|..+. |+.+
T Consensus 128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---~~i~~I~~i~~~ 204 (395)
T PF08596_consen 128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---SPILSIIPINAD 204 (395)
T ss_dssp --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETT
T ss_pred cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---CceEEEEEEECC
Confidence 334688888872 33 5688889999999998752 1111111111111111 2344443 4322
Q ss_pred ---------------------CCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEE-----ecCCCEEEEEeCCCc
Q 001358 948 ---------------------QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATF-----SCDCRMVFTSFVDGT 1001 (1092)
Q Consensus 948 ---------------------g~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~f-----s~dg~~l~t~s~Dg~ 1001 (1092)
..+++++++..++++...+.+...... ........+++ ...+..|++-..+|.
T Consensus 205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~ 283 (395)
T PF08596_consen 205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGS 283 (395)
T ss_dssp T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE
T ss_pred CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCc
Confidence 125666889999999998887766644 22233344555 236778888999999
Q ss_pred EEEEECCCCceEEeeccc
Q 001358 1002 LSIHEASNLEVQCRILST 1019 (1092)
Q Consensus 1002 i~vwd~~~~~~~~~~~~~ 1019 (1092)
|+++.+...+.+......
T Consensus 284 i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 284 IRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp EEEEETTT--EEEEEE-S
T ss_pred EEEEECCCchHhhcccCC
Confidence 999999999999887743
No 349
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.91 E-value=0.0056 Score=71.06 Aligned_cols=248 Identities=13% Similarity=0.107 Sum_probs=139.7
Q ss_pred EEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC--CCCEEEEEe---------CCC
Q 001358 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAY---------SKH 418 (1092)
Q Consensus 350 lasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~las~~---------~d~ 418 (1092)
+..++.++.|.-+|.++|+.+-.+... .+...-..+.-+| .+..+++++ .++
T Consensus 113 V~v~~~~g~v~AlD~~TG~~~W~~~~~-----------------~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g 175 (488)
T cd00216 113 VFFGTFDGRLVALDAETGKQVWKFGNN-----------------DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRG 175 (488)
T ss_pred EEEecCCCeEEEEECCCCCEeeeecCC-----------------CCcCcceEecCCCEEECCEEEEeccccccccCCCCc
Confidence 566778899999999999987543211 1100000011111 124444443 357
Q ss_pred EEEEEEccCCCCccceEEecc----------------cc-cce-eEEEeeCCCCcEEEEEEeCCC---------------
Q 001358 419 IVQLYAYHGGSDARQQLEIDA----------------HV-GNV-NDLAFSAPCKQISVITCGDDK--------------- 465 (1092)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~l~~----------------h~-~~v-~~~~~s~d~~~l~l~s~~~d~--------------- 465 (1092)
.+.-+|.++|+.+-....... +. ..| ...++.+.+. .++.++.++
T Consensus 176 ~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g--~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 176 ALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN--LVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred EEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC--EEEEECCCCCCCccCCccCCCCCC
Confidence 788889988875542211100 00 011 1234444455 456565454
Q ss_pred ---cEEEEECCCCceeEEEecCCcceE------EEeecc--cCCc---cEEEEEecCCeEEEEEcCCCCceEEecCCCCc
Q 001358 466 ---TIKVWDAVTGSRTYSFEGHGAPVY------SLCPHA--KENI---HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG 531 (1092)
Q Consensus 466 ---~i~vwd~~~~~~~~~~~~~~~~v~------~i~~~~--~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 531 (1092)
.|.-.|.++|+.+..++.-..... ...+.. .-++ ..++.++.+|.+...|..+++.+.......
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-- 331 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-- 331 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--
Confidence 799999999999987642111110 001100 0122 267888899999999999998877654321
Q ss_pred eEEEEEecCCCEEEEEecC--------------CCCceeEEEEeCCCCeEEEEEeeccccC-----CceEEEEEcCCCCE
Q 001358 532 CTRMAYSANGRRLFSCGTS--------------KEGESFLVEWNESEGAIKRTYQGLQLQH-----NSVSVVHFDTAKDQ 592 (1092)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~--------------~~~~~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~ 592 (1092)
..++.+| ..++..... ...++.+.-.|..+|+.+-......... .+...-.....+..
T Consensus 332 -~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~ 408 (488)
T cd00216 332 -QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNL 408 (488)
T ss_pred -cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCe
Confidence 1133334 333332110 1235678899999998876665431000 01111111124578
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001358 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1092)
+++++.||.++.+|..+|+.+...+....
T Consensus 409 v~~g~~dG~l~ald~~tG~~lW~~~~~~~ 437 (488)
T cd00216 409 VFAGAADGYFRAFDATTGKELWKFRTPSG 437 (488)
T ss_pred EEEECCCCeEEEEECCCCceeeEEECCCC
Confidence 89999999999999999999998876543
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.89 E-value=0.0052 Score=62.87 Aligned_cols=197 Identities=9% Similarity=0.094 Sum_probs=112.2
Q ss_pred EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+.|.+-.++++.++|.|+.+.|+|+....+.|...+. +|+.++... +.+ -+..-.|++..+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~ 75 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGN 75 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-ST
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECC
Confidence 5677777789999999997778999998899988886 477776533 333 357788999988
Q ss_pred CCEEEEEeCCCEEEEEEccCCCCccce-----EEec---ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC---Cc
Q 001358 408 GSLLGVAYSKHIVQLYAYHGGSDARQQ-----LEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GS 476 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~-----~~l~---~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---~~ 476 (1092)
+.++++--.++.+.++++......... ..+. .+...+-.++|.+.++. |+.+-...-..++.+.. +.
T Consensus 76 ~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 76 GRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp TEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS
T ss_pred CEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCcc
Confidence 888887667899999998543211111 1111 24456899999999885 44444555555665443 22
Q ss_pred eeEEE--------ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CceEEEEEec
Q 001358 477 RTYSF--------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSA 539 (1092)
Q Consensus 477 ~~~~~--------~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s~ 539 (1092)
.+... ......+.++++++. .+++++....+..|..+| ..++.+..+.... .....|+|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred ceeeccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence 22111 113345678888765 557888888888899888 4444433332222 2467899999
Q ss_pred CCCEEEEE
Q 001358 540 NGRRLFSC 547 (1092)
Q Consensus 540 dg~~l~~~ 547 (1092)
+|+..++.
T Consensus 232 ~G~LYIvs 239 (248)
T PF06977_consen 232 DGNLYIVS 239 (248)
T ss_dssp T--EEEEE
T ss_pred CCCEEEEc
Confidence 99766664
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.88 E-value=0.0054 Score=62.72 Aligned_cols=216 Identities=12% Similarity=0.104 Sum_probs=116.7
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccc-cCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 001358 837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIFVWDV 915 (1092)
Q Consensus 837 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~ 915 (1092)
+.+.+-...+..++|.|+++.++++....+.|..++.+ |+.+.++.-. .+..-.|++..++.++++.-+++.+.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34555666799999999557788888888999989874 7877776532 356888999988877777667999999998
Q ss_pred CCCc--eeee--eeeecCCCCcCCCCCceEEEEecCCCEEEEEeC-CcEEEEEcCC---ceeeee-----e--ccCCCcC
Q 001358 916 DGWG--IQTC--RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE-THLAIYEAEE---LTCLKQ-----W--FPISSVP 980 (1092)
Q Consensus 916 ~~~~--~~~~--~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-~~v~lwd~~~---~~~~~~-----~--~~~h~~~ 980 (1092)
.... .... ..+..... ......+..++|.|.++.|.++.+ .-..||.+.. ...+.. + .......
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 4422 1111 11121111 111135899999998777777544 4456666653 111110 0 1113556
Q ss_pred EEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001358 981 ISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus 981 v~~l~fs~d-g~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w 1058 (1092)
+++++|.|. |.+++.+.....|..+| ..|+.+..+....-...- ...--.+--++++| +| .|...+.-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl-~~~~~QpEGIa~d~-~G-~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL-SKDIPQPEGIAFDP-DG-NLYIVSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG--SS---SEEEEEE-T-T---EEEEETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc-ccccCCccEEEECC-CC-CEEEEcCCceEEEe
Confidence 888999885 45666677778899999 667777666533311000 01111245688998 34 55556677776665
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.84 E-value=0.0039 Score=69.93 Aligned_cols=225 Identities=10% Similarity=0.067 Sum_probs=118.9
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+......+..+.++|+|++++++ .+|.-.|+..... +. ...+.-...+|.+.++ +++-...++|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 44455668899999999999995 5666777773321 21 1234556788999665 66666688899974
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
--+.+....+... ..+..+.. |.+|...+. +.|.+||+.+.+.+..+... +|..+.|+++|.+++..+.
T Consensus 96 n~~~~~~k~i~~~-~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~-- 164 (443)
T PF04053_consen 96 NFKNEVVKSIKLP-FSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK-- 164 (443)
T ss_dssp TTEE-TT-----S-S-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--
T ss_pred cCccccceEEcCC-cccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC--
Confidence 2233332333221 12333321 455555544 48999999999888877754 3889999999999998873
Q ss_pred CCceeEEEEeCCCC-----------eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC
Q 001358 552 EGESFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1092)
..+++++.... .....+.... ..|.+.+|..+ .++-.+.. .++.+--.....+..+.
T Consensus 165 ---~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkYl~~Ge~~~i~~ld--- 232 (443)
T PF04053_consen 165 ---DSIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKYLVNGETGIIAHLD--- 232 (443)
T ss_dssp ----SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEEEETTEEEEEEE-S---
T ss_pred ---CeEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEEEEcCCcceEEEcC---
Confidence 33666654332 0222222212 57888888866 44444444 66663322222333332
Q ss_pred CCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358 621 GLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
..+.-+.+.++.+.+.....++.+..+.+..
T Consensus 233 --~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 --KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp --S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred --CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 2366777888778888888888888887763
No 353
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.83 E-value=0.0007 Score=74.59 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=82.9
Q ss_pred CCCeeEEEEecC-CCEEEEEe-----CCe----EEEEEcCCceeeEE---ecCCCCCeEEEEEcCCCCCEEEEEeCCCeE
Q 001358 802 QEAVPCFALSKN-DAYLFSAS-----GGV----ISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTI 868 (1092)
Q Consensus 802 ~~~v~~~~~s~d-g~~l~~~s-----dg~----i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v 868 (1092)
+....++.||.. ...+.+.. +|. -++|++...+..+. --.....+.+++++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 344567777763 33343332 233 56777765543221 123667899999999 88999999999999
Q ss_pred EEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001358 869 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 869 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~ 919 (1092)
.+||...+.. .+..+.-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 9999887632 233345567889999999999999999999999987643
No 354
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.0034 Score=70.18 Aligned_cols=193 Identities=15% Similarity=0.114 Sum_probs=121.1
Q ss_pred ecccccceeEEEeeCCCCcEEEEEEeCCC--cEEEEECCCCceeEEEe--cCCcceEEEeecccCCccEE-EEEecCCeE
Q 001358 437 IDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFI-FSISVDGKI 511 (1092)
Q Consensus 437 l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i 511 (1092)
+..-...+..-+|+|+++.+..++-...+ .+.++|+++++....+. ++.. .-.| ++||+.| ++...||..
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~f--spDG~~l~f~~~rdg~~ 262 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAF--SPDGSKLAFSSSRDGSP 262 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccC--CCCCCEEEEEECCCCCc
Confidence 33444567778999999975444444444 59999999887655443 3322 2244 4566554 556677775
Q ss_pred EE--EEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001358 512 KA--WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 512 ~v--wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
.+ .|+....... +....+.-..-.|+|||+.++..+ ++.+.-.|++.+...+...+...... .. ..-.|+||
T Consensus 263 ~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~---~~-~~p~~Spd 336 (425)
T COG0823 263 DIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGG---GN-SNPVWSPD 336 (425)
T ss_pred cEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCC---CC-cCccCCCC
Confidence 54 5665555333 333333334678999999999886 55667789999988777643333222 22 26679999
Q ss_pred CCEEEEEeC-CCe--EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001358 590 KDQILAAGD-DHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 590 ~~~l~~~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
|++++..+. +|. |.+.|+.++.....+.... ....-.|.++++.+...+..
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 999988663 344 6667776666544443322 23456778888877766554
No 355
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.80 E-value=3e-05 Score=51.97 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001358 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1092)
Q Consensus 4 ~~~~~~~li~q~L~~~G~~~s~~~L~~Esg~~ 35 (1092)
.++++.++|+|||...||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
No 356
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.76 E-value=0.0074 Score=66.79 Aligned_cols=254 Identities=13% Similarity=0.117 Sum_probs=134.7
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCcee------ee------------eeeeeeccccc------ceeEEee
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF------IR------------NFKVWDIGACS------MLFKTAL 391 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~------~~------------~~~~~d~~~~~------~~~~~~~ 391 (1092)
.|+++.|+++.. -||+|...|.|.||.+...+.-. .. .-.+-|+.... ......+
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 588999999976 48888999999999876532221 00 12233443221 2233445
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecc------cccceeEEEeeC-----CC-CcEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFSA-----PC-KQISVI 459 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~------h~~~v~~~~~s~-----d~-~~l~l~ 459 (1092)
+....++|++++.| |=-++|.|+.+|.+.|.|+.+...+.. ..+.. ....|+++.|+- |+ ..+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66678999999998 677999999999999999976654432 12222 334688888862 22 124788
Q ss_pred EEeCCCcEEEEECC--C-Ccee----EEEecCCcceEEEeecccCCc-------------------cEEEEEecCCeEEE
Q 001358 460 TCGDDKTIKVWDAV--T-GSRT----YSFEGHGAPVYSLCPHAKENI-------------------HFIFSISVDGKIKA 513 (1092)
Q Consensus 460 s~~~d~~i~vwd~~--~-~~~~----~~~~~~~~~v~~i~~~~~~~~-------------------~~l~s~~~dg~i~v 513 (1092)
.|...|.+.+|.+. . +... .....+.++|..+......+| .-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999764 1 2221 112246677766653311111 22455556788999
Q ss_pred EEcCCCCceEEecCCCCceEEEEEe-----cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc-cCCceEEEEEc
Q 001358 514 WLYDSLGARVDYDAPGLGCTRMAYS-----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFD 587 (1092)
Q Consensus 514 wd~~~~~~~~~~~~~~~~i~~~~~s-----~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~ 587 (1092)
+...+.+..............+++- ..+..|++... ++.++++.+..-+.+..+.-... ....+....++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888776655544332334445553 34556666654 66799999988887776665320 11223345566
Q ss_pred CCCCEEEEE
Q 001358 588 TAKDQILAA 596 (1092)
Q Consensus 588 ~~~~~l~~~ 596 (1092)
++|..++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 666644444
No 357
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.73 E-value=0.026 Score=64.67 Aligned_cols=249 Identities=13% Similarity=0.115 Sum_probs=128.1
Q ss_pred cEEEEEECCCCCEEEEE-eCC----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEe-C--------
Q 001358 398 SVNRVVWSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-D-------- 463 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~-~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~-~-------- 463 (1092)
.+..+++||||+++|.+ +.. ..++++|+++|+.+.. .+... ....+.|.+|++. ++.+.. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 44568899999999976 333 3699999999864432 11111 1223999999985 333332 2
Q ss_pred -CCcEEEEECCCCcee--EEEecCCcceEEEeecccCCccEEEEEecCC----eEEEEEcCCC----CceEEecCCCCce
Q 001358 464 -DKTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSL----GARVDYDAPGLGC 532 (1092)
Q Consensus 464 -d~~i~vwd~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg----~i~vwd~~~~----~~~~~~~~~~~~i 532 (1092)
...|+.|.+.++..- ..+.........+....+.|+++++..+..+ .+.+.++... .....+......+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~ 279 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV 279 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence 224788888776433 4444444443223333366777776544332 3666677664 2233333233333
Q ss_pred EEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE---EEEEeeccccCCceEEEEEcCCCCEEEE-EeCCC--eEEEEE
Q 001358 533 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH--VIKIWD 606 (1092)
Q Consensus 533 ~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg--~i~iwd 606 (1092)
....-+. +..++..+..+...+.|...++..... ...+..+. ....+..+.. .+++|+. ...++ .|++++
T Consensus 280 ~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~-~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 280 EYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED-EDVSLEDVSL--FKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S-SSEEEEEEEE--ETTEEEEEEEETTEEEEEEEE
T ss_pred EEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC-CceeEEEEEE--ECCEEEEEEEECCccEEEEEE
Confidence 3333233 443333333444567788888877653 22444333 0113444444 4455555 34443 578899
Q ss_pred CCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCCe
Q 001358 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS 656 (1092)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~~ 656 (1092)
+..+.....+..... ..|..+...+++..+..... -+++..||+.+++.
T Consensus 356 ~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 356 LDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 984555555554432 22344444455554443322 26777788887754
No 358
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.71 E-value=5.5e-05 Score=46.58 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhhcChhHHHHHHHHhc
Q 001358 6 KDLVFLILQFLNEEGFTESAHMLERES 32 (1092)
Q Consensus 6 ~~~~~li~q~L~~~G~~~s~~~L~~Es 32 (1092)
+++-+||++||.+.||.+||++|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 578899999999999999999999997
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.71 E-value=0.023 Score=63.95 Aligned_cols=199 Identities=16% Similarity=0.150 Sum_probs=109.6
Q ss_pred EEEecCCCEEEEEeCC------------eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001358 808 FALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 808 ~~~s~dg~~l~~~sdg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 875 (1092)
++.+|.|..+|...+. .|+||+.. |+.+..+.=..+.+.++.|+. +. .|++-..||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence 4556666666666544 58889875 555655443348999999997 44 555677899999999863
Q ss_pred ce------eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee-eeeeeec-CCCCcC--CCCCceE-EEE
Q 001358 876 SE------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-TCRSLQT-PDGVMT--LAPSETH-IQF 944 (1092)
Q Consensus 876 ~~------~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~-~~~~~~~-~~~~~~--~~~~v~~-l~~ 944 (1092)
.. .+....-....+....+..+|-.+. ..++.+.+- .+.... ..+.+.. +..... ....... ..+
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEE--eCccccchhhccccCCCcccccccccccccceEe
Confidence 22 1111111222233334444553333 334433333 222111 0011111 110000 0001111 335
Q ss_pred ecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeecc
Q 001358 945 HKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 945 s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
+.+....+. ..++.+.+.+....+. . ...+++..++.||+|++||.-..+|.+.+...+-.+..+.+..
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 555554444 4455666454432211 1 1246899999999999999999999999998877777777663
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.70 E-value=0.12 Score=60.20 Aligned_cols=105 Identities=10% Similarity=-0.030 Sum_probs=62.7
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccC-Cce-------EEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCC
Q 001358 554 ESFLVEWNESEGAIKRTYQGLQLQH-NSV-------SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~-~~v-------~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
.+.|+-+|..+|+.+-.+....... ... ..+++ .+..++.++.|+.+.-.|..+|+.+.......... -
T Consensus 78 ~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~-~ 154 (527)
T TIGR03075 78 YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKA-G 154 (527)
T ss_pred CCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecccccccc-c
Confidence 3458888998988876665321000 000 01122 23568888899999999999999987765432110 0
Q ss_pred ceEEEcc--CCCEEEEEeC------CCeEEEEECCCCCeeeecc
Q 001358 626 PRICFNK--NGTLLAVIAN------ENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 626 ~~v~~s~--~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~ 661 (1092)
..+.-+| .+..++++.. +|.|.-+|..+++.+-...
T Consensus 155 ~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 155 YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 0111112 1334555442 6899999999998776654
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.013 Score=65.48 Aligned_cols=206 Identities=13% Similarity=0.159 Sum_probs=145.3
Q ss_pred eeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeC---CCeEEEEEcCCceee
Q 001358 805 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSEVI 879 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~---dg~v~iwd~~~~~~~ 879 (1092)
...+++++++..+.... ++.|.+.|..+.+......... ....++++| +++.+.++.. ++.+.+.|..+++..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45678888888665554 5889999988777766654322 667899999 6656655554 689999999998888
Q ss_pred EeeccccCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eC
Q 001358 880 SKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HE 956 (1092)
Q Consensus 880 ~~l~~h~~~V~~l~~spdg~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d 956 (1092)
.....-..+ ..++++|+|+.+..+ ..++.|.+.|........ ...............++++|+|.++.+. .+
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 775543344 889999999966555 478899999987744221 1111111112245789999999987763 22
Q ss_pred --CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCC-CcEEEEECCCCceEEeec
Q 001358 957 --THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-GTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 957 --~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~D-g~i~vwd~~~~~~~~~~~ 1017 (1092)
+.+...|..++.........-......+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 5899999988877765222211156678999999998887444 889999999988876665
No 362
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.68 E-value=0.0094 Score=66.93 Aligned_cols=218 Identities=17% Similarity=0.184 Sum_probs=119.7
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEe
Q 001358 802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 881 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 881 (1092)
...+..+.++|+|++++++++|...|+.....+.... +....++|.+ .++ +|+-...++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 3446789999999999999999999999655554332 3345788988 564 56666688999974333333233
Q ss_pred eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEE
Q 001358 882 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI 961 (1092)
Q Consensus 882 l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~l 961 (1092)
+... ..+..+-. |.+|...+.+ .|.+||+++++ .+....-. .|..+.||++|.++|...+..+.|
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~-----~i~~i~v~-----~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK-----LIRRIDVS-----AVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT-------EEEEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc-----eeeEEecC-----CCcEEEEECCCCEEEEEeCCeEEE
Confidence 3321 23444433 8888877665 79999999865 33333321 378999999999999988889998
Q ss_pred EEcCCc-----------eeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce--EEeeccccccCCCCcc
Q 001358 962 YEAEEL-----------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV--QCRILSTAYLRPTTSC 1028 (1092)
Q Consensus 962 wd~~~~-----------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~ 1028 (1092)
++.... ..+.. ...-...|.+.+|-.| -++.|. .. .++. +.+|+. ++.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~-~~E~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i~~ld----------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFEL-IHEISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETGIIAHLD----------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEE-EEEE-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S-----------
T ss_pred EEecchhcccccccCchhceEE-EEEecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcceEEEcC-----------
Confidence 886533 01111 1111568899999877 444444 33 6776 455543 22222
Q ss_pred CcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358 1029 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1029 ~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.+++. +.+.|. .+.+.....|+.|..+.++
T Consensus 233 ~~~yl--lgy~~~-~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 233 KPLYL--LGYLPK-ENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp S--EE--EEEETT-TTEEEEE-TT--EEEEE--
T ss_pred CceEE--EEEEcc-CCEEEEEECCCCEEEEEEC
Confidence 22443 344442 4688888899999888775
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.63 E-value=0.048 Score=61.43 Aligned_cols=231 Identities=12% Similarity=0.080 Sum_probs=111.8
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCc---cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE-C
Q 001358 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD-A 472 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd-~ 472 (1092)
+.|.++.|+.+.+++ +...||.++++|+.+.... .......-....+.+..+..+|- .++++ ++.+.+-+ .
T Consensus 81 ~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCeEE-EEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEECC--CCeEEEEeCc
Confidence 799999999865554 5569999999998743200 00001111122233334444442 33333 44444433 2
Q ss_pred CCCceeEEE---ecCCc------ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCE
Q 001358 473 VTGSRTYSF---EGHGA------PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 473 ~~~~~~~~~---~~~~~------~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 543 (1092)
......+.+ .+... ....+ .....+....+....++.+.+.+-..... ....+++..+++||+|++
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~ 230 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKF 230 (410)
T ss_pred cccchhhccccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCE
Confidence 211111111 11000 00000 01122334445555555565443222111 112458999999999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001358 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
++.... ++.+.+....-.+....+.... ......+.|..+...++.- ...+.+.....
T Consensus 231 iAl~t~----~g~l~v~ssDf~~~~~e~~~~~--~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~-------------- 288 (410)
T PF04841_consen 231 IALFTD----SGNLWVVSSDFSEKLCEFDTDS--KSPPKQMAWCGNDAVVLSW--EDELLLVGPDG-------------- 288 (410)
T ss_pred EEEEEC----CCCEEEEECcccceeEEeecCc--CCCCcEEEEECCCcEEEEe--CCEEEEECCCC--------------
Confidence 998865 4557777766555555555442 2455666676553222221 22333332111
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeeccc
Q 001358 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1092)
..+.|.-++..++..-.|| +||.....-..++....
T Consensus 289 --~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~ 324 (410)
T PF04841_consen 289 --DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPD 324 (410)
T ss_pred --CceEEeccCceEEeccCCc-eEEEeCCceEEEEECCH
Confidence 2244444444444444454 77776665555555443
No 364
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.00047 Score=76.83 Aligned_cols=209 Identities=16% Similarity=0.084 Sum_probs=127.6
Q ss_pred CCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEe-cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001358 801 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTI-MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1092)
+...+.--+++..+++++.|++ |.+++|+-..++....- .+..+.+....+|+ +..++|.|+..|.|.++-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence 4555666678889999999985 99999998777654332 23445566777888 888999999999999998876432
Q ss_pred -----eEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEE
Q 001358 879 -----ISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952 (1092)
Q Consensus 879 -----~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 952 (1092)
+..+. .|...|++++|++|+..+.+|...|.|..-.++....... ..+... .....|..+... ..+|+
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~-~~q~il---~~ds~IVQlD~~--q~~LL 184 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLS-KSQEIL---SEDSEIVQLDYL--QSYLL 184 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcc-ccceee---ccCcceEEeecc--cceeh
Confidence 12222 3788999999999999999999999999988887211111 111111 111234444443 33344
Q ss_pred EEeCCcEEEEEcCCceeeeeeccCCCc-CEEEEEEecC----CCEEEEEeCCCcEEEEECC-CCceEEeec
Q 001358 953 LVHETHLAIYEAEELTCLKQWFPISSV-PISQATFSCD----CRMVFTSFVDGTLSIHEAS-NLEVQCRIL 1017 (1092)
Q Consensus 953 ~~~d~~v~lwd~~~~~~~~~~~~~h~~-~v~~l~fs~d----g~~l~t~s~Dg~i~vwd~~-~~~~~~~~~ 1017 (1092)
++.--.-.+++++.+...+.-.....+ .-...+|-|. .+-.+.++.-| .|+|..+ .|+...+..
T Consensus 185 VStl~r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Thq 254 (726)
T KOG3621|consen 185 VSTLTRCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTHQ 254 (726)
T ss_pred HhhhhhhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEeee
Confidence 333333445555433311110011111 2345666654 33445566665 6899876 455555443
No 365
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.58 E-value=0.0041 Score=72.66 Aligned_cols=183 Identities=9% Similarity=0.067 Sum_probs=105.0
Q ss_pred CCeeEEEEecCCCEEEEEe-------CC--eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC--------
Q 001358 803 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------- 865 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d-------- 865 (1092)
..+.+.++||||+.++... +. .+.+++.. +.. ..+.. ....+.-.|+| |+..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3567899999999988765 33 35555642 222 33322 22478899999 77777766432
Q ss_pred ----CeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEE---EEcCCCceeeeeeeecCCCCcCCCCC
Q 001358 866 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS 938 (1092)
Q Consensus 866 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1092)
+.+.+.+++.++... ...+.|..+.|||||+.+|... ++.|.+ -....|+...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 234333444443322 2356799999999999998876 477777 444444421111111111111 23
Q ss_pred ceEEEEecCCCEEEEEeCCc--EEEEEcCCceeeeeeccC--CCcCEEEEEEecCCCEEEEEeCCC
Q 001358 939 ETHIQFHKDQTRFLLVHETH--LAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus 939 v~~l~~s~dg~~la~~~d~~--v~lwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~s~Dg 1000 (1092)
+.+++|.+++.+++...++. +...++. |..... ..+ ...++..++-+++ .|+....+|
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecC-Cccccc-cCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 57899999999765544333 4444444 222221 122 2567777777663 355555566
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.18 Score=56.44 Aligned_cols=251 Identities=13% Similarity=0.118 Sum_probs=162.1
Q ss_pred cEEEEEECCCCCEEEEEeCCC-EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001358 398 SVNRVVWSPDGSLLGVAYSKH-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~-~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
....++..|+|..+....... .+..-+..... ... ....-...-..++.++++.. .+++...++.|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~-~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNT-VTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccce-eee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 556688889886665553222 44444444211 111 11111133457788888886 55666667899999988888
Q ss_pred eeEEEecCCcceEEEeecccCCccEEEEEec---CCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCC
Q 001358 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
..+...--. ....+++. ++++.+..+.. ++++.+.|-.+............+ ..++++|+|..++.+. ..
T Consensus 108 ~~~~~~vG~-~P~~~~~~--~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~---~~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVD--PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN---SD 180 (381)
T ss_pred eeeEeeecc-CCceEEEC--CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe---cC
Confidence 777664333 44456664 45555555444 688888888877776664333334 8899999999888775 23
Q ss_pred ceeEEEEeCCCCeEEEEEeec--cccCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceEEEEeCCCCCCCCceE
Q 001358 554 ESFLVEWNESEGAIKRTYQGL--QLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1092)
++.|.+.|..+....+ -... .........+.++|+++.+++.... +.+...|..++.........+.. ....+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 7789999977766653 1100 1012345678899999987775433 59999999998877763222222 35678
Q ss_pred EEccCCCEEEEEeCC-CeEEEEECCCCCeeeecc
Q 001358 629 CFNKNGTLLAVIANE-NRIKILETPESNSVDAAG 661 (1092)
Q Consensus 629 ~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~ 661 (1092)
.++|+|+.+.+.... +.+.+.|..+........
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 999999999888554 888888888776555443
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.038 Score=55.20 Aligned_cols=232 Identities=16% Similarity=0.085 Sum_probs=136.9
Q ss_pred EEEEecCCC-EEEEEe-CCe-EEEEEcCCceeeEEecCCCCC--eEEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCc
Q 001358 807 CFALSKNDA-YLFSAS-GGV-ISLYIVMTFKTILTIMPPSPT--ATSLAFNPHDNNVIAIGMDD-----STILIYNARSS 876 (1092)
Q Consensus 807 ~~~~s~dg~-~l~~~s-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~ 876 (1092)
.++++|.-. -++.+- -|+ ..++|..+.+.+.++....+. --.=.||| ||.+|+..-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 567777543 344444 355 778999888777665433321 12346999 89998865443 68999999864
Q ss_pred -eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEE--------------------EEcCCCceeeeeeeecCCCCcCC
Q 001358 877 -EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV--------------------WDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 877 -~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~i--------------------wd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
+.+..+..|.-.-..+.+.+||+.|+.+. |-|.. .|-.++.......+.....+
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~--- 225 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ--- 225 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh---
Confidence 56778888888888899999999998764 32333 33333322221111111112
Q ss_pred CCCceEEEEecCCCEEEEE-e-----CCcEEEEEcCCceeeeeecc------CCCcCEEEEEEecCCCEEE-EEeCCCcE
Q 001358 936 APSETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVF-TSFVDGTL 1002 (1092)
Q Consensus 936 ~~~v~~l~~s~dg~~la~~-~-----d~~v~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~-t~s~Dg~i 1002 (1092)
..+..++.-+||+.++.+ . |---.+=-...++.+.-+-. .-...|-+++..-+..+++ |+-..++.
T Consensus 226 -lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 226 -LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred -cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 258889999999887763 1 11111111112222221110 1144667777776555555 44455678
Q ss_pred EEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001358 1003 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1003 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
.+||..+|.++....... . . -++.. ..-|++.+.+|.++++.-
T Consensus 305 vi~da~tG~vv~~a~l~d----a------a--Gva~~---~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 305 VIWDAATGAVVSEAALPD----A------A--GVAAA---KGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred EEEEcCCCcEEecccccc----c------c--cceec---cCceEEecCCceEEeccc
Confidence 899999999884443111 1 1 12222 345888889999998854
No 368
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.46 E-value=0.071 Score=53.38 Aligned_cols=256 Identities=16% Similarity=0.154 Sum_probs=139.7
Q ss_pred ceEEEEEcCCCCE-EEEEeCCCe-EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-----CeEEEEECC
Q 001358 580 SVSVVHFDTAKDQ-ILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETP 652 (1092)
Q Consensus 580 ~v~~~~~~~~~~~-l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~ 652 (1092)
.-..++++|.... ++.+-.-|+ ..++|..+.+...++.........-.-+|||||.+|...-+| |.|-|||..
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 3445778887544 344555554 578999988887777654332223346799999999876543 677788776
Q ss_pred CC-CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCc
Q 001358 653 ES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 731 (1092)
Q Consensus 653 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 731 (1092)
.+ +.+..+..
T Consensus 149 ~~fqrvgE~~t--------------------------------------------------------------------- 159 (366)
T COG3490 149 EGFQRVGEFST--------------------------------------------------------------------- 159 (366)
T ss_pred cccceeccccc---------------------------------------------------------------------
Confidence 43 11111111
Q ss_pred cccccEEEEEEecCCcEEEEeecCCeeEEe-eecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001358 732 VKANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
|.-....+.+.+||+.++.+.. -|..- ++...+...+ ...-.+.+.+..+|..+....++..-+...+..++.
T Consensus 160 -~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNld---sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~ 233 (366)
T COG3490 160 -HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLD---SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDI 233 (366)
T ss_pred -CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchh---hcCccEEEEeccccchhhhccCchhhhhcceeeeee
Confidence 2222334566677775554432 12221 1111111000 001123345556666566666654446778899999
Q ss_pred ecCCCEEEEEe-CC----e-EEEEEcCCceeeEEecC-------CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001358 811 SKNDAYLFSAS-GG----V-ISLYIVMTFKTILTIMP-------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1092)
Q Consensus 811 s~dg~~l~~~s-dg----~-i~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1092)
.+||..++.+- .| . .-+=-...++.+.-+.- ..+.|-+++.+.+++-..+|.-..+...+||..+|.
T Consensus 234 g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 234 GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 99998877663 11 1 11111223444333322 224677888887555555555556678899999998
Q ss_pred eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001358 878 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 878 ~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd 914 (1092)
++..-.-- ....++ +...-++..+.+|.+.++.
T Consensus 314 vv~~a~l~--daaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 314 VVSEAALP--DAAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEeccccc--ccccce--eccCceEEecCCceEEecc
Confidence 76543211 111222 2344455566778787773
No 369
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.45 E-value=0.11 Score=55.55 Aligned_cols=231 Identities=11% Similarity=0.125 Sum_probs=131.2
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE----
Q 001358 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---- 481 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~---- 481 (1092)
..++.|+.|+.+| +.+++......... . .+...|..+...++-+ .++.-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3588999999999 99999933222221 1 2333499999999887 444443 599999998754433211
Q ss_pred ----------ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCC-----CceEEecCCCCceEEEEEecCCCEEEE
Q 001358 482 ----------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-----GARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 482 ----------~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
......+...+......+...+......+|.+|.+... ....++... ..+..++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence 11222344443112233344455555668998887763 222333333 567788888 566666
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccc---------cCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE--E
Q 001358 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T 615 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~ 615 (1092)
+.. ....+.|+.++.....+..... ...++..+.. +++.++++- +..-.+.|. .|+... .
T Consensus 154 ~~~-----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GTS-----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred EeC-----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 653 2378889987776554432210 0123333333 345566553 222233343 444333 3
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeeccc
Q 001358 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1092)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1092)
+.-.. ....+++. ..++++.+. +.|.||++.+++.++.+..
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 33222 24556653 457776666 5699999999988887764
No 370
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.41 E-value=0.0089 Score=70.72 Aligned_cols=149 Identities=12% Similarity=0.118 Sum_probs=102.6
Q ss_pred CCCEEEEE-eCCCeEEEEEcCCceeeEeeccccCC-eEEEEEcC-----CCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 001358 855 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSD-----ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ 927 (1092)
Q Consensus 855 d~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~sp-----dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 927 (1092)
+..+|+.- .....|+-.|++.|+.+..+..|... |..++-.. +...-+.|=.+..+..||..-.. .+++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC---Cceee
Confidence 45555543 34578999999999999999987754 55543221 12233456667779999987532 11222
Q ss_pred cCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001358 928 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 928 ~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
............++++-+.+|.+.+.+.+|.|++||- .|....+.+++-..+|.+|..+.||+||++.+ +..+.++++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1111112223578888888888777789999999994 45555666777789999999999999998664 667888886
Q ss_pred C
Q 001358 1008 S 1008 (1092)
Q Consensus 1008 ~ 1008 (1092)
.
T Consensus 647 ~ 647 (794)
T PF08553_consen 647 L 647 (794)
T ss_pred e
Confidence 3
No 371
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.41 E-value=0.13 Score=55.02 Aligned_cols=229 Identities=14% Similarity=0.069 Sum_probs=129.0
Q ss_pred CCceEEEEEcCcCcEEEEecCC-CCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Q 001358 345 VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 423 (1092)
Q Consensus 345 dg~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iw 423 (1092)
.++ .|+.|+.+| +.+++... ...... .+...|..+...|+-+.|++-+ |+.+.++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i---------------------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRI---------------------LKLSSITQLSVLPELNLLLVLS-DGQLYVY 61 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccceeE---------------------eecceEEEEEEecccCEEEEEc-CCccEEE
Confidence 345 477888877 99999832 222211 1333499999999888877775 4889999
Q ss_pred EccCCCCccceEE-----------ecccccceeEEE--eeCCCCcEEEEEEeCCCcEEEEECCCC-----ceeEEEecCC
Q 001358 424 AYHGGSDARQQLE-----------IDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHG 485 (1092)
Q Consensus 424 d~~~~~~~~~~~~-----------l~~h~~~v~~~~--~s~d~~~l~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~~ 485 (1092)
++..-........ --.....+...+ -...+.. .|+.+ ..+.|.+|.+... +..+++. -.
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp 138 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LP 138 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEE-ECCEEEEEEEECCcccccceeEEEE-cC
Confidence 9876443321100 011222344444 1123332 34444 4558888877653 3555654 44
Q ss_pred cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-----------CceEEEEEecCCCEEEEEecCCCCc
Q 001358 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-----------LGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----------~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
..+.+++|. +..++.|..+ ...+.|+.++.......... .....+.--+++.+|++..
T Consensus 139 ~~~~~i~~~----~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~------ 207 (275)
T PF00780_consen 139 DPPSSIAFL----GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYD------ 207 (275)
T ss_pred CCcEEEEEe----CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEec------
Confidence 678888885 2356666644 46778888665544332111 1112222334456666532
Q ss_pred eeEEEEeCCCCeEEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001358 555 SFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
. +-++=-..|+..+ .+.- . .....+++. ..++++.+. +.|.||++.++++++.+..+
T Consensus 208 ~-~g~fv~~~G~~~r~~~i~W-~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 N-IGVFVNKNGEPSRKSTIQW-S---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred c-eEEEEcCCCCcCcccEEEc-C---CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 1 3333233454443 2221 1 344555553 357777666 45999999999999998754
No 372
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.38 E-value=0.00012 Score=80.23 Aligned_cols=203 Identities=13% Similarity=0.103 Sum_probs=129.1
Q ss_pred ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCce--EEecCCCCceEEEEEec-CCCEEEEEecCCCCceeEEEEeCC
Q 001358 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
.+.+++.....+..+++.|..+|.|-+-.++..... .....+...+++++|++ |.+.|+++-..-+.+..+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 344555444445567888899999998877654432 33445566889999988 566777765544567789999998
Q ss_pred CC--eEEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCCCceEEEcc-CCCEE
Q 001358 564 EG--AIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNK-NGTLL 637 (1092)
Q Consensus 564 ~~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~-~~~~l 637 (1092)
++ .+.. .+.+. ......+++|..+.+.+++|.....+.++|++- ......+. +..+..+..+| .+.++
T Consensus 138 s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCce
Confidence 87 2221 22221 124556888998889999999989999999872 22222221 12366778888 77787
Q ss_pred EEEeCCCeEEEEECC-CC-Ceeeeccccc----ccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccc
Q 001358 638 AVIANENRIKILETP-ES-NSVDAAGVLS----DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1092)
Q Consensus 638 ~~~~~dg~i~iw~~~-~~-~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1092)
++-. ||.|.+||.. .- .++..+.... ..+..++++|..+ |...+.....++|+
T Consensus 212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--------------------glla~l~RdS~tIr 270 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--------------------GLLAVLSRDSITIR 270 (783)
T ss_pred eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------------chhhhhccCcceEE
Confidence 7665 8999999943 21 2233222222 2477888887643 33333334456788
Q ss_pred eecee
Q 001358 712 VEKPL 716 (1092)
Q Consensus 712 ~w~~~ 716 (1092)
++++.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 88754
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.049 Score=58.01 Aligned_cols=223 Identities=15% Similarity=0.089 Sum_probs=135.6
Q ss_pred EeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001358 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1092)
Q Consensus 340 v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1092)
-.|.|+...|+.+--..+.|.-|+..+|+... +. +...+.++..-.++..|+++. .+
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~-~g- 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE-HG- 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc-cc-
Confidence 45778887777777778899999998775432 11 333445555544555555543 33
Q ss_pred EEEEEccCCCCccceEEec-cc-ccceeEEEeeCCCCcEEEEEEeCC----------CcEEEEECC-CCceeEEEecCCc
Q 001358 420 VQLYAYHGGSDARQQLEID-AH-VGNVNDLAFSAPCKQISVITCGDD----------KTIKVWDAV-TGSRTYSFEGHGA 486 (1092)
Q Consensus 420 i~iwd~~~~~~~~~~~~l~-~h-~~~v~~~~~s~d~~~l~l~s~~~d----------~~i~vwd~~-~~~~~~~~~~~~~ 486 (1092)
+.+++.+++.......... +. ...-+.+...|+|. +.+ +... ..-.+|-+. .+..++.+..+-.
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~ 163 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLT 163 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcCCCCEEEeecCcEE
Confidence 6777876655422221111 11 24567888899998 333 3322 112344444 5666666666666
Q ss_pred ceEEEeecccCCccEEEEE-ecCCeEEEEEcCC-----CCc--eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358 487 PVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDS-----LGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~-~~dg~i~vwd~~~-----~~~--~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
.-+.++|++ |++.++.+ +..+.|.-|+++. ... ........+..-.++...+|.+-+++... ...|.
T Consensus 164 ~~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v~ 238 (307)
T COG3386 164 IPNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRVV 238 (307)
T ss_pred ecCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceEE
Confidence 678899965 55555555 4458888887763 111 22233344556678888888887644321 23699
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEe
Q 001358 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG 597 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s 597 (1092)
.|+.. |+++..+.... ..+.+++|. |+.+.|++.+
T Consensus 239 ~~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 239 RFNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEe
Confidence 99998 99998888875 566777774 4556665554
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.071 Score=56.81 Aligned_cols=199 Identities=13% Similarity=0.081 Sum_probs=115.2
Q ss_pred EEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec--
Q 001358 808 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-- 883 (1092)
Q Consensus 808 ~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-- 883 (1092)
..|.++...|.... .+.|.-|+..+++. ..+..+......+.+.. ++ .|+++. . -+++++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~-~g-~Lv~~~-~-g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDA-GG-RLIACE-H-GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecC-CC-eEEEEc-c-ccEEEeccCCceeEEeccc
Confidence 35667777666665 68899999876643 23332222223333443 34 444332 3 36677766655422221
Q ss_pred --c-ccCCeEEEEEcCCCCEEEEEeC-----C----CcEEEEEcC-CCceeeeeeeecCCCCcCCCCCceEEEEecCCCE
Q 001358 884 --G-HSKRVTGLVFSDALNILVSSGG-----D----AQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950 (1092)
Q Consensus 884 --~-h~~~V~~l~~spdg~~l~s~s~-----D----g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 950 (1092)
+ -......+...|+|.+.++... . ..=.||.+. .+. ..+....+.. .-..++||||++.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~~---~~NGla~SpDg~t 176 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDLT---IPNGLAFSPDGKT 176 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcEE---ecCceEECCCCCE
Confidence 1 1234556788899988876544 0 112455555 222 1122222111 2467999999988
Q ss_pred EEEE--eCCcEEEEEcCC--ce----eeeeeccCCCcCEEEEEEecCCCEEEEEeCCC-cEEEEECCCCceEEeecccc
Q 001358 951 FLLV--HETHLAIYEAEE--LT----CLKQWFPISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 951 la~~--~d~~v~lwd~~~--~~----~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg-~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
|..+ ..+.|.-|++.. +. ..........+....++...+|.+.+++..+| .|.+|+.+ |+++..+....
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~ 254 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV 254 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence 7774 447788887752 21 11122223467778888889998886554444 89999999 99998887443
No 375
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.32 E-value=9.4e-05 Score=80.96 Aligned_cols=203 Identities=12% Similarity=0.165 Sum_probs=128.0
Q ss_pred CCCceEEeecCCCc-eEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-CCCEE
Q 001358 334 SSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1092)
Q Consensus 334 ~~~V~~v~~spdg~-~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l 411 (1092)
+..+.|++++-+.+ -++++|..+|.|.+-.+....-- ...+..+|....+++||++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 34788888876543 58999999999998877543211 0122567888999999999 77888
Q ss_pred EEEe----CCCEEEEEEccCC--CCccceEEecc-cccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEec
Q 001358 412 GVAY----SKHIVQLYAYHGG--SDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG 483 (1092)
Q Consensus 412 as~~----~d~~i~iwd~~~~--~~~~~~~~l~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~ 483 (1092)
|+|- .|..+.|||+.++ ...... .+.+ ......+++|..|.+ ++.+|.....+.++|++... ....+
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--
Confidence 8873 3557999999987 222111 1222 334566889998877 78888888899999976321 11111
Q ss_pred CCcceEEEeecccCCccEEEEEecCCeEEEEE-cCCCCceE-EecCC----CCceEEEEEecCCCE-EEEEecCCCCcee
Q 001358 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWL-YDSLGARV-DYDAP----GLGCTRMAYSANGRR-LFSCGTSKEGESF 556 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~-~~~~~----~~~i~~~~~s~dg~~-l~~~~~~~~~~~~ 556 (1092)
.+..+..+.+.|- .+.++++-. ||.|-+|| ...-+... .+... ...+..++|.|-..- ++++.. ..++
T Consensus 194 nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~t 268 (783)
T KOG1008|consen 194 NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSIT 268 (783)
T ss_pred hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---Ccce
Confidence 2233444455442 223565544 99999999 43333222 11111 124788999996543 444433 2667
Q ss_pred EEEEeCC
Q 001358 557 LVEWNES 563 (1092)
Q Consensus 557 i~iwd~~ 563 (1092)
|+++|+.
T Consensus 269 Irlydi~ 275 (783)
T KOG1008|consen 269 IRLYDIC 275 (783)
T ss_pred EEEeccc
Confidence 8998875
No 376
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.29 E-value=0.77 Score=55.60 Aligned_cols=205 Identities=13% Similarity=0.145 Sum_probs=120.7
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcc--------eEEEeeccc--------------CCccEEEEEecCCeEEEE
Q 001358 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHAK--------------ENIHFIFSISVDGKIKAW 514 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--------v~~i~~~~~--------------~~~~~l~s~~~dg~i~vw 514 (1092)
.++.++.++.|.-.|.++|+.+.++...... ...+++... ..+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666777888888898888888776432211 112222211 133478888999999999
Q ss_pred EcCCCCceEEecCCCC------------ceEEEEEec--CCCEEEEEecCCC------CceeEEEEeCCCCeEEEEEeec
Q 001358 515 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 515 d~~~~~~~~~~~~~~~------------~i~~~~~s~--dg~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
|.++++....+..... ....+.-+| .+..++.++...+ ..+.|+-+|..+|+.+-.+..-
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9998888765532111 000111112 1334555543222 2678999999999998776531
Q ss_pred cc--------------cCCce-EEEEEcCCCCEEEEEe------------------CCCeEEEEECCCCceEEEEeCCCC
Q 001358 575 QL--------------QHNSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 575 ~~--------------~~~~v-~~~~~~~~~~~l~~~s------------------~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1092)
.. ....+ ..+++.++...++.+. ..+.|.-.|.++|+....++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 10 00011 2345555555555422 234566778889988877754221
Q ss_pred C-------CCCceEEEcc-CCC---EEEEEeCCCeEEEEECCCCCeeeecc
Q 001358 622 L-------PENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 622 ~-------~~v~~v~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
. ....-+.+.. +|+ .++.++.+|.+.++|..+++.+....
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 0 0111122322 553 78999999999999999998876554
No 377
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.13 E-value=0.14 Score=56.19 Aligned_cols=217 Identities=12% Similarity=0.048 Sum_probs=119.0
Q ss_pred CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC----CCEEEEEeC---------C-CEEEE
Q 001358 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLLGVAYS---------K-HIVQL 422 (1092)
Q Consensus 357 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd----g~~las~~~---------d-~~i~i 422 (1092)
..|+|.|..+.+.+..+.++ -..+-..+..+.|..+ ..+|++|+. . |.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 35888898888877665543 0111123334445543 578888743 2 88999
Q ss_pred EEccCC----CCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEe-cCCcceEEEeeccc
Q 001358 423 YAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFE-GHGAPVYSLCPHAK 496 (1092)
Q Consensus 423 wd~~~~----~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~-~~~~~v~~i~~~~~ 496 (1092)
+++... ..++.... ....++|++++-- ++. ++.+. .+.|.+|++...+ ....-. .....+.++...
T Consensus 67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~---lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-- 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR---LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-- 138 (321)
T ss_dssp EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE---EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE---EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence 999984 22333222 2457789998776 343 44333 4789999998887 433222 122355665542
Q ss_pred CCccEEEEEecCCeEEEEEcCCCCc-eE--EecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC-------C-
Q 001358 497 ENIHFIFSISVDGKIKAWLYDSLGA-RV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-------G- 565 (1092)
Q Consensus 497 ~~~~~l~s~~~dg~i~vwd~~~~~~-~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-------~- 565 (1092)
+.+++.|.....+.++.++.... .. ........++++.|-++++.++.+-. .+.+.++.... +
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~~~~~~~~~~~ 212 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYNPEIPNSRDGD 212 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-SS-SSTTTTT
T ss_pred --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEECCCCccccccc
Confidence 34899999988888886655332 22 22333456888889877776665533 55566655431 2
Q ss_pred -eEEEEEeeccccCCceEEE---EEcCC--C------CEEEEEeCCCeEEE
Q 001358 566 -AIKRTYQGLQLQHNSVSVV---HFDTA--K------DQILAAGDDHVIKI 604 (1092)
Q Consensus 566 -~~~~~~~~~~~~~~~v~~~---~~~~~--~------~~l~~~s~dg~i~i 604 (1092)
.......-|- ...|+++ .+.|. + ..++.++.+|.|.+
T Consensus 213 ~~L~~~~~f~l--g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 213 PKLERISSFHL--GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TBEEEEEEEE---SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccceeEEEEEC--CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 2222223232 2456665 44441 1 13666777777663
No 378
>PRK10115 protease 2; Provisional
Probab=97.13 E-value=0.63 Score=56.39 Aligned_cols=245 Identities=9% Similarity=0.040 Sum_probs=123.4
Q ss_pred CcEEEEEECCCCCEEEEEeCC-----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC-----Cc
Q 001358 397 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT 466 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~ 466 (1092)
-.+..+.|||||++||.+... ..|++-|+.+|..+.. .+.+ . -..++|++|++.+ +++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~~-~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWTF-YYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCEE-EEEEecCCCCCCCE
Confidence 356678999999999987332 3689999998864321 1222 1 1458999999863 3333222 46
Q ss_pred EEEEECCCC--ceeEEEecCCcceEEEeecccCCccEEEEEecC---CeEEEEEcCC--CCceEEecCCCCceEEEEEec
Q 001358 467 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA 539 (1092)
Q Consensus 467 i~vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~ 539 (1092)
|..+++.++ +....+........ +....+.++.+++..+.. +.+.+++.+. ......+.........+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence 888898888 33334443333333 222224455655544433 4688888533 222222222222222222 2
Q ss_pred CCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEe
Q 001358 540 NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTID 617 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~ 617 (1092)
.+..+...+..+.....|...++. .++. ..+..+. ....+..+.+.. +..+++...+|.-+++-+.. +..+..+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~-~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPR-ENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCC-CCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 234444444333334456556665 2322 2333331 123677777773 34555566677655554432 22334433
Q ss_pred CCCCCCCCceEEEc--cCCC-EEEEEeC---CCeEEEEECCCC
Q 001358 618 AGGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPES 654 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iw~~~~~ 654 (1092)
.... ..+..+.++ +++. ++++.+. -+.+..+|..++
T Consensus 355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 2111 112222334 3433 3333332 367777887765
No 379
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.12 E-value=0.028 Score=61.67 Aligned_cols=214 Identities=11% Similarity=0.115 Sum_probs=116.8
Q ss_pred ccccCCCCCceeeecCCCCCCCCCeeEEEEecC----CCEEEEEe----------C-CeEEEEEcCCc----eeeEEe--
Q 001358 781 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN----DAYLFSAS----------G-GVISLYIVMTF----KTILTI-- 839 (1092)
Q Consensus 781 ~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~d----g~~l~~~s----------d-g~i~iwd~~~~----~~~~~~-- 839 (1092)
++.|+.+...+....+...++...+..+.+..+ ..++++|. . |.+.++++... ..+..+
T Consensus 5 ~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~ 84 (321)
T PF03178_consen 5 RLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS 84 (321)
T ss_dssp EEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE
T ss_pred EEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE
Confidence 344455555455555543222222333344432 56777774 1 77999999884 122211
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce-eeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001358 840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~ 917 (1092)
....++|++++--. ++ |+++. .+.|.+|++...+ ....-.- ....++++... +++++.|+..+.+.++.++.
T Consensus 85 ~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 85 TEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEET
T ss_pred EeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEc
Confidence 22467888888763 44 44443 5789999998877 4333221 22255555554 66999999888899886664
Q ss_pred CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCC-------ce-eeeeeccCC-CcCEEEE---
Q 001358 918 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE-------LT-CLKQWFPIS-SVPISQA--- 984 (1092)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~-------~~-~~~~~~~~h-~~~v~~l--- 984 (1092)
... ....+..-... ..++++.|-+|++.++++ .+|.+.++.... +. .+.....-| ...|+++
T Consensus 159 ~~~-~l~~va~d~~~----~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 159 ENN-KLILVARDYQP----RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG 233 (321)
T ss_dssp TTE--EEEEEEESS-----BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred cCC-EEEEEEecCCC----ccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence 221 11222221111 258899998777655554 678899988762 11 222212122 5677777
Q ss_pred EEec--CCC------EEEEEeCCCcEEEE
Q 001358 985 TFSC--DCR------MVFTSFVDGTLSIH 1005 (1092)
Q Consensus 985 ~fs~--dg~------~l~t~s~Dg~i~vw 1005 (1092)
.+.| .+. .++.++.+|.|.+.
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4445 222 47778899998843
No 380
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.12 E-value=0.16 Score=56.22 Aligned_cols=83 Identities=8% Similarity=0.056 Sum_probs=56.7
Q ss_pred CCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEecCCCCCeEE-EEEcCCC----------------CC-EEEE
Q 001358 801 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATS-LAFNPHD----------------NN-VIAI 861 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d----------------~~-~las 861 (1092)
....+.+++.+|++++.|+.++ |.|.++|+.++..++.+++..+.-.. +...... .. +++-
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 4566889999999998888764 99999999999888877765432111 1110001 11 3444
Q ss_pred EeCCCeEEEEEcCCceeeEeec
Q 001358 862 GMDDSTILIYNARSSEVISKLE 883 (1092)
Q Consensus 862 g~~dg~v~iwd~~~~~~~~~l~ 883 (1092)
+-.-|.|.||.+.+|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 6678899999999887666554
No 381
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.10 E-value=0.19 Score=52.47 Aligned_cols=147 Identities=17% Similarity=0.136 Sum_probs=89.9
Q ss_pred CeEEEEEcCCCCCEEEEEe-CC--CeEEEEEcCCceeeEe-eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE-cCCCc
Q 001358 845 TATSLAFNPHDNNVIAIGM-DD--STILIYNARSSEVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWG 919 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~-~d--g~v~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd-~~~~~ 919 (1092)
.+.+.++++ ++..+|... .+ ..++++.. +..... +.+ ..++...|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 677666554 23 35555543 332332 233 3688899999988777777677777774 23332
Q ss_pred eeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe----CCcEEEEEcC---Cc--eee---eeeccCCCcCEEEEEEe
Q 001358 920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCL---KQWFPISSVPISQATFS 987 (1092)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~----d~~v~lwd~~---~~--~~~---~~~~~~h~~~v~~l~fs 987 (1092)
... ..+...... ..|..+++||||..+|... ++.|.+--+. .+ ..+ ..........++.+.|.
T Consensus 100 ~~~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GEP-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred cee-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 211 112221111 1599999999999999843 5677777553 23 111 01111235688999999
Q ss_pred cCCCEEEEEeCCCc
Q 001358 988 CDCRMVFTSFVDGT 1001 (1092)
Q Consensus 988 ~dg~~l~t~s~Dg~ 1001 (1092)
+++.+++.+...+.
T Consensus 175 ~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 175 DDSTLVVLGRSAGG 188 (253)
T ss_pred CCCEEEEEeCCCCC
Confidence 99998777665443
No 382
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0031 Score=66.00 Aligned_cols=104 Identities=14% Similarity=0.267 Sum_probs=84.9
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHhcCCCh----------hHHHHHHHhcCcCHHHHHHHhccC-CCcCCccccchhhhHh
Q 001358 8 LVFLILQFLNEEGFTESAHMLERESRFYF----------DMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFEI 76 (1092)
Q Consensus 8 ~~~li~q~L~~~G~~~s~~~L~~Esg~~~----------~~~~~~~~i~~G~w~~~~~~l~~~-~~~~~~~~~~~~~~~i 76 (1092)
+-.+|..++...|+.+.+..|-+|+|... ++.++-++|.+||-.-|++.+.+- ..+.+. ..++.|.+
T Consensus 119 ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~~L 196 (394)
T KOG2817|consen 119 LNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEFKL 196 (394)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHHHH
Confidence 57789999999999999999999999864 278889999999999999998663 222222 12378999
Q ss_pred HHhhhhhhccCCCHH--HHHHHHHhhccccCCCCHHHHH
Q 001358 77 RKQNFFEALDGHDIA--KALNILKKDLKDFAPGNEELFK 113 (1092)
Q Consensus 77 ~~q~~~Ell~~~~~~--~a~~~l~~~l~~~~~~~~~~~~ 113 (1092)
..+.|++++..|... +|++..|+.++|+........+
T Consensus 197 h~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQ 235 (394)
T KOG2817|consen 197 HSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQ 235 (394)
T ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHH
Confidence 999999999999888 9999999999999655433333
No 383
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.07 E-value=0.13 Score=56.69 Aligned_cols=84 Identities=12% Similarity=0.248 Sum_probs=58.9
Q ss_pred CceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC-----------------CE
Q 001358 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-----------------DQ 592 (1092)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~ 592 (1092)
..+.+++.+|++++.++. |.-+.|.++|..++..++..+|.. +..+.-+.....+ .+
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEE
Confidence 357889999998877764 346789999999999999998876 2222222221111 12
Q ss_pred E-EEEeCCCeEEEEECCCCceEEEEeCC
Q 001358 593 I-LAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 593 l-~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
| +-+..-|.|.||.+..|..+..+...
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 2 33667899999999999888877654
No 384
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.02 E-value=0.61 Score=49.43 Aligned_cols=158 Identities=11% Similarity=0.037 Sum_probs=83.3
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001358 840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~ 919 (1092)
....+.+..+..++ |+++++++..-....-||--...-...-..-+..|.+|.|+||+.+.+. ...|.|+.=+.....
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCc
Confidence 34457788899999 8999988765555567775432111222224678999999999877664 488888887722211
Q ss_pred eeeeeee-ecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeecc--CCCcCEEEEEEecCCCEEEEE
Q 001358 920 IQTCRSL-QTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTS 996 (1092)
Q Consensus 920 ~~~~~~~-~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~t~ 996 (1092)
..-.+.+ ...... -.+..++|.+++...|++..+.+ +.....|+.-..-.. .-......+.|.++.+-++ .
T Consensus 219 ~~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-l 292 (302)
T PF14870_consen 219 ETWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-L 292 (302)
T ss_dssp EEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E
T ss_pred cccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-E
Confidence 1111111 111111 13789999999999998887755 345555654443322 2255688899987765555 4
Q ss_pred eCCCcEEEE
Q 001358 997 FVDGTLSIH 1005 (1092)
Q Consensus 997 s~Dg~i~vw 1005 (1092)
+.+|.+.-|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 578887655
No 385
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0027 Score=70.17 Aligned_cols=93 Identities=22% Similarity=0.430 Sum_probs=72.4
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEE-EEEECCCCCEEEEE
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGVA 414 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~-~l~~spdg~~las~ 414 (1092)
.|..+.|+|.-. ++|.+..+|.|.+..++ -+.+ |+ +.-|+..++ +++|.|||+.||+|
T Consensus 22 ~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGkllaVg 80 (665)
T KOG4640|consen 22 NIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLAVG 80 (665)
T ss_pred ceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEEEE
Confidence 788999999988 89999999999998887 4433 33 333666666 99999999999999
Q ss_pred eCCCEEEEEEccCCCCccceEEecccccceeEEEeeC
Q 001358 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~ 451 (1092)
-.||+|++-|+++|..+... ...-...|.++-|.+
T Consensus 81 ~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 81 FKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred ecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 99999999999998765431 123345677777763
No 386
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.92 E-value=0.0022 Score=43.87 Aligned_cols=39 Identities=36% Similarity=0.622 Sum_probs=34.6
Q ss_pred ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001358 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd 914 (1092)
+++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 387
>PRK10115 protease 2; Provisional
Probab=96.86 E-value=1.9 Score=52.43 Aligned_cols=244 Identities=9% Similarity=0.024 Sum_probs=121.6
Q ss_pred CceEEeecCCCceEEEEEcCcC----cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.+..+.+||||++++.+.+.+| .|++-|+.+|..+.. . +.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~-----------------i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-L-----------------LDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-c-----------------ccC---cceEEEEeeCCCEE
Confidence 5777899999996555444443 488999988864421 0 111 11459999999988
Q ss_pred EEEeCC------CEEEEEEccCCCCccceEEeccccccee-EEEeeCCCCcEEEEEEe-CCCcEEEEECC--CCceeEEE
Q 001358 412 GVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSF 481 (1092)
Q Consensus 412 as~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v~-~~~~s~d~~~l~l~s~~-~d~~i~vwd~~--~~~~~~~~ 481 (1092)
+....+ ..|..+++.++..-... .+.+...... .+..+.|++++++-+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l-v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL-VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE-EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 776442 35788888877311111 2222222233 33345588853322222 34578888843 34422222
Q ss_pred ecCCcceEEEeecccCCccEEEEEecC-Ce--EEEEEcCCCCc-eEEecC-CCCceEEEEEecCCCEEEEEecCCCCcee
Q 001358 482 EGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGA-RVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~--i~vwd~~~~~~-~~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1092)
.........+. + . ++.+++....+ .. |...++..... ...+.. ....+..+.+. ++.|+..... .+...
T Consensus 266 ~~~~~~~~~~~-~-~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-H-Y-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLTS 339 (686)
T ss_pred ECCCCCEEEEE-e-C-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEEE
Confidence 21222222222 1 1 22333333222 23 33344442122 223333 23367777776 4455544432 34666
Q ss_pred EEEEeCCCCeEEEEEe-eccccCCceEEEEEc--CCCC-EEEEEe---CCCeEEEEECCCCc
Q 001358 557 LVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ 611 (1092)
Q Consensus 557 i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~--~~~~-~l~~~s---~dg~i~iwd~~~~~ 611 (1092)
+++++..++.. ..+. ... ..+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 340 l~~~~~~~~~~-~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTREV-IGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCce-EEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 78888654433 3332 111 223333344 3444 333332 45678888988765
No 388
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.047 Score=59.38 Aligned_cols=146 Identities=9% Similarity=0.105 Sum_probs=101.6
Q ss_pred EEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCE--E-----EEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001358 858 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI--L-----VSSGGDAQIFVWDVDGWGIQTCRSLQTPD 930 (1092)
Q Consensus 858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~--l-----~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 930 (1092)
+|.++.....++--|++.|+.+..+.-|.. |.-+.+.|+.+. | +.|=.|..|.-||..-.........+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 444556666888899999999999997777 778888887532 2 22445777899987642221111112111
Q ss_pred CCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358 931 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 931 ~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
- .......|.+-..+|..++.+.+|.|++||- .+....+.+++-..+|..+..+.||++|+.. .+..+.+-++.
T Consensus 427 y--~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 427 Y--STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred c--ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 1 1112356677777777766789999999997 6666666788889999999999999999855 46677777654
No 389
>PHA02713 hypothetical protein; Provisional
Probab=96.80 E-value=0.074 Score=62.70 Aligned_cols=199 Identities=9% Similarity=-0.002 Sum_probs=107.8
Q ss_pred CCCEEEEEeCC------CeEEEEEcCCcee--eEeeccccCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCcee
Q 001358 855 DNNVIAIGMDD------STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQ 921 (1092)
Q Consensus 855 d~~~lasg~~d------g~v~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg-----~i~iwd~~~~~~~ 921 (1092)
++.+.+.|+.+ ..+..||..+..- +..+.........+ .-+|+..+.||.++ ++..||..+++..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 56777888754 3578888877542 22222111112222 23678888888764 4788998876533
Q ss_pred eeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eC-----------------------CcEEEEEcCCceeeeeeccCC
Q 001358 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----------------------THLAIYEAEELTCLKQWFPIS 977 (1092)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d-----------------------~~v~lwd~~~~~~~~~~~~~h 977 (1092)
....+..... ... +..-+|++.++| .+ +.+..||..+.+-... .+-.
T Consensus 381 ~~~~mp~~r~------~~~--~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~ 451 (557)
T PHA02713 381 MLPDMPIALS------SYG--MCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFW 451 (557)
T ss_pred ECCCCCcccc------ccc--EEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec-CCCC
Confidence 3222211111 111 223367766664 22 2477888876654322 1111
Q ss_pred CcCEEEEEEecCCCEEEEEeCCC------cEEEEECCC-CceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEe
Q 001358 978 SVPISQATFSCDCRMVFTSFVDG------TLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1050 (1092)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~s~Dg------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~ 1050 (1092)
.......+..-+|+..+.||.++ .+..||..+ .+.... ...+.. .....++.. ++...++|+
T Consensus 452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~----~~m~~~-----r~~~~~~~~--~~~iyv~Gg 520 (557)
T PHA02713 452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI----TTTESR-----LSALHTILH--DNTIMMLHC 520 (557)
T ss_pred cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc----cccCcc-----cccceeEEE--CCEEEEEee
Confidence 11222222345677777787642 467788887 444311 111111 112223333 478999999
Q ss_pred CCC--cEEEEecCCCCCccccCCCCCccc
Q 001358 1051 TNG--EVYVIEPNEPGDTWAVLPPDEIVG 1077 (1092)
Q Consensus 1051 ~dg--~v~~w~~~~~~~~~~~~~~~~~~~ 1077 (1092)
.|| ++..||+ ...+|...+|.-.+.
T Consensus 521 ~~~~~~~e~yd~--~~~~W~~~~~~~~~~ 547 (557)
T PHA02713 521 YESYMLQDTFNV--YTYEWNHICHQHSNS 547 (557)
T ss_pred ecceeehhhcCc--ccccccchhhhcCCc
Confidence 999 7778888 455699888876544
No 390
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0056 Score=67.73 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=69.0
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001358 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 922 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~ 922 (1092)
..+.-+.|+| .-.++|++..+|.|.++.+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4677899999 88899999999999999998 777888887888888 99999999999999999999999999976443
No 391
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.75 E-value=0.23 Score=51.84 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=91.3
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE-cCCceee
Q 001358 803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI 879 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd-~~~~~~~ 879 (1092)
..+.+.++|+|++.+|... ++.-.+|-...+....... ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3678999999999888776 5444444444333333332 233788889999 677777777677777774 3333321
Q ss_pred -Eeec--cccCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCcee----eeeeeecCCCCcCCCCCceEEEEecCCC
Q 001358 880 -SKLE--GHSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQ----TCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 880 -~~l~--~h~~~V~~l~~spdg~~l~s~s---~Dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
..+. .-.+.|+.+.+||||..+|... .++.|.+=-+...... ....+...... ...+..++|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCCCE
Confidence 1121 1122899999999999988766 3567777766532221 11111222111 23689999999999
Q ss_pred EEEEE
Q 001358 950 RFLLV 954 (1092)
Q Consensus 950 ~la~~ 954 (1092)
+++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88874
No 392
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.75 E-value=0.036 Score=65.74 Aligned_cols=145 Identities=12% Similarity=0.117 Sum_probs=98.4
Q ss_pred CcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc-eEEEeeccc---CCccEEEEEecCCeEEEEEcCCCCceEE-ec--
Q 001358 454 KQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP-VYSLCPHAK---ENIHFIFSISVDGKIKAWLYDSLGARVD-YD-- 526 (1092)
Q Consensus 454 ~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~i~~~~~---~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~-- 526 (1092)
+.++|........|+-.|+++|+.+..+..|... |..++.... -+..-.+.|-.+..+..||.+....... -.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3334555556688999999999999999888754 777654211 0123456777888899999987543221 11
Q ss_pred --CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001358 527 --APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 527 --~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
.......|++-+.+|. ||+|+. +|-|++||.-..+....+.+.. .+|..+..+.||+++++.+. ..+.+
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~-tyLlL 643 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLG---DPIIGIDVTADGKWILATCK-TYLLL 643 (794)
T ss_pred ccccCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCC---CCeeEEEecCCCcEEEEeec-ceEEE
Confidence 1233577887777774 666665 4459999965444444555555 89999999999999988775 45556
Q ss_pred EEC
Q 001358 605 WDM 607 (1092)
Q Consensus 605 wd~ 607 (1092)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 654
No 393
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.73 E-value=0.04 Score=61.00 Aligned_cols=161 Identities=14% Similarity=0.112 Sum_probs=94.7
Q ss_pred CCeEEEEEcCCCCCEEEEEe--CCCeEEEEEcCCceeeEeeccccCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCC
Q 001358 844 PTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spd----g~~l~s~s~Dg~i~iwd~~~ 917 (1092)
.++..+||.. +.+.+.+.- .+|.+++= +.+.+.+|+ .|..+.|+|- -..|...-.-+.|.||.+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfG---ds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFG---DSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccC---CccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4778899984 444444432 33443332 223455554 4889999985 33455567788899999873
Q ss_pred Cceeeeeee--ecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEE
Q 001358 918 WGIQTCRSL--QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 994 (1092)
Q Consensus 918 ~~~~~~~~~--~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 994 (1092)
......+.+ ++-+-.....--...+.|+|....|++ ...+.-.++++......-..-....+.|.|.+|..||+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 322222222 222211111123467899999999988 44444455666533322221223478999999999998877
Q ss_pred EEe-CCCcEEEEECCCCce
Q 001358 995 TSF-VDGTLSIHEASNLEV 1012 (1092)
Q Consensus 995 t~s-~Dg~i~vwd~~~~~~ 1012 (1092)
++- ..=.-++||-....+
T Consensus 172 VAvGSsLHSyiWd~~qKtL 190 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQKTL 190 (671)
T ss_pred EEeCCeEEEEEecCchhhh
Confidence 653 333467998665533
No 394
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.037 Score=60.16 Aligned_cols=144 Identities=13% Similarity=0.143 Sum_probs=95.3
Q ss_pred CCCEEEE-EeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEE-----EEEeCCCcEEEEECCCC-c-ee
Q 001358 407 DGSLLGV-AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV-----ITCGDDKTIKVWDAVTG-S-RT 478 (1092)
Q Consensus 407 dg~~las-~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l-----~s~~~d~~i~vwd~~~~-~-~~ 478 (1092)
+..+|.. +.....++--|++.|+.+. ++.-|.. |+-+.+.|+.+.--+ +.|-.|..|+-||++-. . .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 4444443 4444558888999998776 4555555 888888887652111 23556888999998732 2 23
Q ss_pred EEEecCC----cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCc
Q 001358 479 YSFEGHG----APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 479 ~~~~~~~----~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
...++|. ....|.+ ...+| +++.||.+|.||+||--.......+.+-+.+|..+..+.||+++++.+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~a--TT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFA--TTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceee--ecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 2223332 1233333 34444 899999999999998744445556777888999999999999998765 4
Q ss_pred eeEEEEeC
Q 001358 555 SFLVEWNE 562 (1092)
Q Consensus 555 ~~i~iwd~ 562 (1092)
.++.+.+.
T Consensus 492 tyLlLi~t 499 (644)
T KOG2395|consen 492 TYLLLIDT 499 (644)
T ss_pred cEEEEEEE
Confidence 45666654
No 395
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.66 E-value=0.0036 Score=42.72 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=32.6
Q ss_pred eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEe
Q 001358 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 363 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd 363 (1092)
....+..|.+.|.++.|+|++. ++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 4566778999999999999997 789999999999996
No 396
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.58 E-value=0.094 Score=45.22 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=66.9
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEc
Q 001358 889 VTGLVFSD---AL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 964 (1092)
Q Consensus 889 V~~l~~sp---dg-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~ 964 (1092)
|++|++.. || +.|+.||.|..|++|+=+. .+...... ..|++++-...+++..+-.+|+|.+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~----~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET----DKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc----cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 67777765 32 6799999999999998765 22222222 2588888888877777778999999985
Q ss_pred CCceeeeeeccCCCcCEEEEEEec---CC-CEEEEEeCCCcEEE
Q 001358 965 EELTCLKQWFPISSVPISQATFSC---DC-RMVFTSFVDGTLSI 1004 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~---dg-~~l~t~s~Dg~i~v 1004 (1092)
. .+.|.......++++++.. || .-|++|-.+|.|-+
T Consensus 71 ~----~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 S----QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred c----ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 3 2223333344567766543 33 25888888887653
No 397
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.52 E-value=0.22 Score=58.53 Aligned_cols=235 Identities=11% Similarity=0.023 Sum_probs=124.7
Q ss_pred CCCEEEEEeCC------CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC------CcEEEEECCC
Q 001358 407 DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVT 474 (1092)
Q Consensus 407 dg~~las~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~~ 474 (1092)
.+.++++|+.+ ..+..+|..+++-.. ...+. +...-.++++.. +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 45566666655 358888988763221 11222 222234445443 44 78888888 3577888887
Q ss_pred CceeE--EEecCCcceEEEeecccCCccEEEEEecCCe-----EEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEE
Q 001358 475 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 475 ~~~~~--~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
++-.. .+...........+ +|.+.+.|+.||. +..||..+.+-...-......-..-...-+|+..++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 76432 11111111111111 6678899998875 6667665544322222222122222334467777777
Q ss_pred ecCCCCc--eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCceEEEEeCCC
Q 001358 548 GTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 548 ~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~ 620 (1092)
|.++..+ ..+..||+.+++....-.... ...... ++. -++...++||.|+ +|..||..+.+....-....
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 7655432 678899998876644332222 001122 222 2455666677665 37788988877655532222
Q ss_pred CCCCCceEEEccCCCEEEEEeCCC-----eEEEEECCCCC
Q 001358 621 GLPENPRICFNKNGTLLAVIANEN-----RIKILETPESN 655 (1092)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~ 655 (1092)
....+..+ .-++...++|+.|| ++..||..+.+
T Consensus 512 ~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 512 PRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ccccccEE--EECCEEEEEecccCccccceeEEcCCCCCc
Confidence 21111112 23577778887764 46666666553
No 398
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.52 E-value=1.1 Score=49.14 Aligned_cols=113 Identities=23% Similarity=0.272 Sum_probs=59.1
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC---CCEEE
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLLG 412 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~la 412 (1092)
..+.|+|.|||+ ++++ ...|.|++++ ..+..... +-++ ..+..........++|+|+ ..+|.
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~~----v~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKTP----VADL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECEE----EEE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcce----eccc--------ccccccccCCcccceeccccCCCCEEE
Confidence 568999999997 6665 4589999999 44543110 0000 0123345678899999995 33443
Q ss_pred -EEeCC--------CEEEEEEccCCC-Ccc---ce-EEecc---cccceeEEEeeCCCCcEEEEEEeCCC
Q 001358 413 -VAYSK--------HIVQLYAYHGGS-DAR---QQ-LEIDA---HVGNVNDLAFSAPCKQISVITCGDDK 465 (1092)
Q Consensus 413 -s~~~d--------~~i~iwd~~~~~-~~~---~~-~~l~~---h~~~v~~~~~s~d~~~l~l~s~~~d~ 465 (1092)
+.+.. ..|.-|....+. .+. .+ ..+.. ....-..|+|.|||. +.++.+..+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~ 135 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG 135 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence 33321 245555555441 111 11 01111 223456799999996 555555443
No 399
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.51 E-value=1 Score=50.11 Aligned_cols=284 Identities=12% Similarity=0.104 Sum_probs=147.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCc-----eEEEEeCCCCCCCCceEEEc---c--CCCEEEEEeCCCeEEEEECCCC--C--
Q 001358 590 KDQILAAGDDHVIKIWDMNKVQ-----LLTTIDAGGGLPENPRICFN---K--NGTLLAVIANENRIKILETPES--N-- 655 (1092)
Q Consensus 590 ~~~l~~~s~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~s---~--~~~~l~~~~~dg~i~iw~~~~~--~-- 655 (1092)
...+++||..|.++||+...+. .+-..+.. .+|..+... + +...||+ -.-..+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~---~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK---DPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecC---CcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 4689999999999999986543 22222222 235555432 2 2344555 34567888876311 1
Q ss_pred -----eeeecccccc--cceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceeccc
Q 001358 656 -----SVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1092)
Q Consensus 656 -----~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 728 (1092)
.+.....|.- ...++.+.|.+. ......+..-+.||.+.+++-+... ....+
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg-----------------~~~~~~IcVQS~DG~L~~feqe~~~----f~~~l 171 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGG-----------------VKGRDFICVQSMDGSLSFFEQESFA----FSRFL 171 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCC-----------------CCCceEEEEEecCceEEEEeCCcEE----EEEEc
Confidence 1111111111 111122222211 1224567778899999999854221 11122
Q ss_pred CCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCccc----------ccccCCccccCCCCCceeeecCCC
Q 001358 729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA----------TTKVPPRLYQPRHGPQFMVNDTTD 798 (1092)
Q Consensus 729 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~ 798 (1092)
+..-. ...+.|.+....+++++++..+..|+++.-....+... ....-..-|...-|+...
T Consensus 172 p~~ll---PgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l------ 242 (418)
T PF14727_consen 172 PDFLL---PGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL------ 242 (418)
T ss_pred CCCCC---CcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE------
Confidence 22112 23468888888899999999999988754222111110 111122335544444222
Q ss_pred CCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEE-E------cCCCCCEEEEEeCCCeEEEE
Q 001358 799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA-F------NPHDNNVIAIGMDDSTILIY 871 (1092)
Q Consensus 799 ~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~-~------s~~d~~~lasg~~dg~v~iw 871 (1092)
.+..+.++.....+++-+...+.+.+-. |......+ ......|++ | .+..+..+++++.++++.||
T Consensus 243 -----~i~v~~~~~~~~~IvvLger~Lf~l~~~-G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy 315 (418)
T PF14727_consen 243 -----DIQVVRFSSSESDIVVLGERSLFCLKDN-GSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVY 315 (418)
T ss_pred -----EEEEEEcCCCCceEEEEecceEEEEcCC-CeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEE
Confidence 2333444444455666666777666653 44332222 122222222 1 12112358889999999999
Q ss_pred EcCCceeeEeeccccCCeEEEE---EcCCCCEEEEEeCCCcEEEEEcCC
Q 001358 872 NARSSEVISKLEGHSKRVTGLV---FSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 872 d~~~~~~~~~l~~h~~~V~~l~---~spdg~~l~s~s~Dg~i~iwd~~~ 917 (1092)
.= .+.+...+....+| ++. |..-...+++-+.+|.+.+-=+.+
T Consensus 316 ~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 316 ED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred eC--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 53 34444444333333 333 223356888889999988876655
No 400
>PHA02713 hypothetical protein; Provisional
Probab=96.48 E-value=0.13 Score=60.62 Aligned_cols=202 Identities=8% Similarity=-0.018 Sum_probs=101.5
Q ss_pred CCCcEEEEEEeCC------CcEEEEECCCCceeE--EEecCCcceEEEeecccCCccEEEEEecCC-----eEEEEEcCC
Q 001358 452 PCKQISVITCGDD------KTIKVWDAVTGSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS 518 (1092)
Q Consensus 452 d~~~l~l~s~~~d------~~i~vwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~ 518 (1092)
++. +++.||.+ ..+..||+.+..... .+.........+.+ ++.+.+.|+.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence 555 56667643 347788887765321 11111111111222 556777787664 377888765
Q ss_pred CCceEEecCCCCceEEEEEecCCCEEEEEecCCC-------------------CceeEEEEeCCCCeEEEEEeeccccCC
Q 001358 519 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-------------------GESFLVEWNESEGAIKRTYQGLQLQHN 579 (1092)
Q Consensus 519 ~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~-------------------~~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1092)
..=...-..+.......+..-+|+..+.||.++. ....+..||+.+.+....-.-.. ...
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-~r~ 455 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-GTI 455 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc-ccc
Confidence 4322111111111111122346776666664321 02458889988876543222111 011
Q ss_pred ceEEEEEcCCCCEEEEEeCC------CeEEEEECCC-CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC--eEEEEE
Q 001358 580 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE 650 (1092)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iw~ 650 (1092)
....+ .-++...+.|+.+ ..+..||..+ .+....-...........++ -+++..++|+.++ .+..||
T Consensus 456 ~~~~~--~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 456 RPGVV--SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cCcEE--EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence 11112 2245555566643 2467899887 55543333222221222222 2688889999888 777888
Q ss_pred CCCCCeeeeccccc
Q 001358 651 TPESNSVDAAGVLS 664 (1092)
Q Consensus 651 ~~~~~~~~~~~~~~ 664 (1092)
..+.+.......|.
T Consensus 532 ~~~~~W~~~~~~~~ 545 (557)
T PHA02713 532 VYTYEWNHICHQHS 545 (557)
T ss_pred cccccccchhhhcC
Confidence 88776555444443
No 401
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.42 E-value=1.4 Score=48.23 Aligned_cols=239 Identities=13% Similarity=0.141 Sum_probs=120.0
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCcee---eEEe----cCCCCCeEEEEEcCC---CCCEEEEEeCC--------
Q 001358 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI----MPPSPTATSLAFNPH---DNNVIAIGMDD-------- 865 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~---~~~~----~~~~~~i~~l~~s~~---d~~~lasg~~d-------- 865 (1092)
..+.|+|.|||+++++-..|.|++++ ..+.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999998877789999999 44443 2222 223456799999992 13333333321
Q ss_pred CeEEEEEcCCc-------ee-eEeecc---ccCCeEEEEEcCCCCEEEEEeCCCc-----------EEEEEcCC-Cceee
Q 001358 866 STILIYNARSS-------EV-ISKLEG---HSKRVTGLVFSDALNILVSSGGDAQ-----------IFVWDVDG-WGIQT 922 (1092)
Q Consensus 866 g~v~iwd~~~~-------~~-~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~-----------i~iwd~~~-~~~~~ 922 (1092)
..|.-|....+ +. +..+.. ....-..|+|.|||.+.++.+..+. =+|+.+.. +....
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 13444444332 11 122222 2223456999999988888776543 01121111 00000
Q ss_pred -----------eeeeecCCCCcCCCCCceEEEEecC-CCEEEE--EeCCcEEEEEcCCcee----------------e--
Q 001358 923 -----------CRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL--VHETHLAIYEAEELTC----------------L-- 970 (1092)
Q Consensus 923 -----------~~~~~~~~~~~~~~~~v~~l~~s~d-g~~la~--~~d~~v~lwd~~~~~~----------------~-- 970 (1092)
..... .|. .....++|.|. |++.++ +.+..=.|.-+..|.- .
T Consensus 162 dnP~~~~~~~~~~i~A--~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~ 235 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYA--YGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGD 235 (331)
T ss_dssp TSTTTTSTTSTTTEEE--E------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECT
T ss_pred CCccccCCCceEEEEE--eCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccc
Confidence 00000 011 12477999999 887776 4443322322322210 0
Q ss_pred ---------eeeccCCCcCEEEEEEec-------CCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccce
Q 001358 971 ---------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus 971 ---------~~~~~~h~~~v~~l~fs~-------dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
..+.-.+...+..+.|-. .|.++++.-..+.|....+..+........ .. . ...-+++
T Consensus 236 ~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~---~~~~r~~ 309 (331)
T PF07995_consen 236 APSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FL-G---GFGGRPR 309 (331)
T ss_dssp GSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--EC-T---TSSS-EE
T ss_pred ccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--cc-c---cCCCCce
Confidence 000111345677777753 455676666567787777775533322221 11 1 1122456
Q ss_pred EEEECCCCCCEEEEEeCCCcEE
Q 001358 1035 AIAAHPLKPTQFAVGLTNGEVY 1056 (1092)
Q Consensus 1035 ~~~~~p~~~~~l~~~~~dg~v~ 1056 (1092)
.+++.| ||.++++.+.+|.|+
T Consensus 310 ~v~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 310 DVAQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEET-TSEEEEEE-TTTTEE
T ss_pred EEEEcC-CCeEEEEECCCCeEe
Confidence 888988 588888888888875
No 402
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.05 Score=64.37 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=78.6
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001358 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
-+..++.|+..|.+-..|+.+. +.....-..-.++|++++|+.||+ .++.|-.+|.|.+||+.+++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4567888988899988888764 221111223457999999999999 788999999999999999999999998888
Q ss_pred ceEEEeecc-cCCccEEEEEecCCeEEEEEc
Q 001358 487 PVYSLCPHA-KENIHFIFSISVDGKIKAWLY 516 (1092)
Q Consensus 487 ~v~~i~~~~-~~~~~~l~s~~~dg~i~vwd~ 516 (1092)
+.+.+-+.. ..++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 887765432 334456777777776 5543
No 403
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.26 E-value=1.7 Score=44.58 Aligned_cols=185 Identities=9% Similarity=0.095 Sum_probs=113.5
Q ss_pred CeeEEEEecCCCEEEEEe-C--CeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceee
Q 001358 804 AVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 879 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s-d--g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 879 (1092)
-...+.|..+|.++-+.+ . ..|+.+|+.+++......-.. ----.++.. ++++..-.-.++...+||..+-+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 345688878888877776 2 469999999998776544322 233445555 4556666788999999999999988
Q ss_pred EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCc
Q 001358 880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 958 (1092)
Q Consensus 880 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~ 958 (1092)
.++. ..+.=+.++ .|++.|+.......|.++|.++-+......+....... ..+.-+.+- +|...|=. ....
T Consensus 124 ~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv---~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 124 GTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV---SNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE------EEEEEEE-TTEEEEEETTSSE
T ss_pred EEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEEC---CCcEeEEEE-cCEEEEEeCCCCe
Confidence 8886 345567777 46777777666777999998875544433333221111 245666665 55544433 5567
Q ss_pred EEEEEcCCceeeeeecc-----------CC---CcCEEEEEEecCCCEEEEEe
Q 001358 959 LAIYEAEELTCLKQWFP-----------IS---SVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 959 v~lwd~~~~~~~~~~~~-----------~h---~~~v~~l~fs~dg~~l~t~s 997 (1092)
|...|..+|+....+-. .+ ..-...+++.|++..+...|
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 88888888887764311 01 34578899988766555444
No 404
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.18 E-value=2.9 Score=46.62 Aligned_cols=277 Identities=13% Similarity=0.102 Sum_probs=149.5
Q ss_pred CCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec-----CCCEEEE
Q 001358 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFS 819 (1092)
Q Consensus 745 ~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~-----dg~~l~~ 819 (1092)
+...+++|+..|.+++|+-......+. ..+...+ -..+|..++.-+ +...||+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-----------------~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaV 93 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE-----------------DLLLETQ-----LKDPILQVECGKFVSGSEDLQLAV 93 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc-----------------cEEEEEe-----cCCcEEEEEeccccCCCCcceEEE
Confidence 345688899999999998533221111 1122222 345666665432 3456777
Q ss_pred EeCCeEEEEEcCC--ce-------eeEEecCCC--CCeEEEEEcCC----CCCEEEEEeCCCeEEEEEcCCceeeEeecc
Q 001358 820 ASGGVISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPH----DNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 820 ~sdg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
-.-..+.||.+.. |. .+..+..|. .....++.-|. +..++++=+.||.+.+|+-+.-.....+.+
T Consensus 94 LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~ 173 (418)
T PF14727_consen 94 LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD 173 (418)
T ss_pred ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC
Confidence 6778888888731 11 112222232 23334444332 246899999999999999876554455544
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee---------------------eeeeeecCCCCcCCCCCceEEE
Q 001358 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ---------------------TCRSLQTPDGVMTLAPSETHIQ 943 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~---------------------~~~~~~~~~~~~~~~~~v~~l~ 943 (1092)
.--...+++++.-..+++++.+..|.-|....-... ....+...+... .+..+.
T Consensus 174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l----~i~v~~ 248 (418)
T PF14727_consen 174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL----DIQVVR 248 (418)
T ss_pred -CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE----EEEEEE
Confidence 222334788888889999999988888875321000 000000111100 233344
Q ss_pred EecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEE-Eec----CCC---EEEEEeCCCcEEEEECCCCceEEe
Q 001358 944 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQAT-FSC----DCR---MVFTSFVDGTLSIHEASNLEVQCR 1015 (1092)
Q Consensus 944 ~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~-fs~----dg~---~l~t~s~Dg~i~vwd~~~~~~~~~ 1015 (1092)
++.....+++-.+..+...+.. |.......- .....+++ |.. ++. .++.++.++++.||.=.+....+.
T Consensus 249 ~~~~~~~IvvLger~Lf~l~~~-G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~ 325 (418)
T PF14727_consen 249 FSSSESDIVVLGERSLFCLKDN-GSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQ 325 (418)
T ss_pred cCCCCceEEEEecceEEEEcCC-CeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecC
Confidence 4444445555556667776653 443332211 22222222 222 222 477788999999986554444433
Q ss_pred eccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001358 1016 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 1016 ~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
.. ..+|. +.++.-++-...|++-+.+|.+.+-=+-.
T Consensus 326 l~----------~~PVa-l~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 326 LP----------HVPVA-LSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred CC----------CCCEE-EEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 32 11222 22333222357899999999998865543
No 405
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.12 Score=61.71 Aligned_cols=249 Identities=9% Similarity=0.041 Sum_probs=143.5
Q ss_pred CCCeeEEEEecCCCEEEEEe--C-CeEEEEEcCCceeeE-----EecCC------CCCeEEEEEcCCCCCEEEEEeCCCe
Q 001358 802 QEAVPCFALSKNDAYLFSAS--G-GVISLYIVMTFKTIL-----TIMPP------SPTATSLAFNPHDNNVIAIGMDDST 867 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~s--d-g~i~iwd~~~~~~~~-----~~~~~------~~~i~~l~~s~~d~~~lasg~~dg~ 867 (1092)
...+..+...+|+...++.. + -.|..||+.+...-. .+..| .....++.|.|.=....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 44566777788887766664 3 358999987543221 12212 2344677888743445667788999
Q ss_pred EEEEEcCCce-eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEec
Q 001358 868 ILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 946 (1092)
Q Consensus 868 v~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 946 (1092)
|++..+.-.. .+..+. -...+++++|+|.|+.++.|-..|++.-|........ .+..+.... ...|.+|.|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence 9988775432 223333 5567899999999999999999999998876653211 222222111 13688888888
Q ss_pred CCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCC
Q 001358 947 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1026 (1092)
Q Consensus 947 dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1026 (1092)
.-.++++-... ++ ....+...+++.+. -.-||.+.+-..-.+..- | ..++...
T Consensus 254 t~eflvvy~n~--------ts--------~~~dpd~y~~~~~k------~kp~g~~nF~E~~d~tpp--f---g~~~rq~ 306 (1405)
T KOG3630|consen 254 TQEFLVVYGNV--------TS--------ETDDPDSYDQKMYK------IKPDGSANFQETFDITPP--F---GQIVRQP 306 (1405)
T ss_pred ceeEEEEeccc--------cc--------CcCCchhhhhcccc------ccCcceeeeccccCCCCC--c---cccCccc
Confidence 77777761110 00 00111111121111 113444444333222221 1 0111111
Q ss_pred ccCcccceEEEECCCCCCEEEEEeCC-CcEEEEecCCCCCccccCCCCCcccCCCCCCccccc
Q 001358 1027 SCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDR 1088 (1092)
Q Consensus 1027 ~~~~v~~~~~~~~p~~~~~l~~~~~d-g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1088 (1092)
| .....-..|.|++...++++..- ..|-+|... ..|....+.|-.++..+.+.++|+
T Consensus 307 h--~y~~~L~~W~~~~~~vVvvansaSsEvsila~~---~qW~~w~~vde~ra~LP~s~k~d~ 364 (1405)
T KOG3630|consen 307 H--MYKVTLSGWIEPDANVVVVANSASSEVSILASM---KQWIEWSQVDEKRAVLPISEKTDK 364 (1405)
T ss_pred h--hHHHhhhhhcccccceEEEecccccchhhhhhh---cceeeccccccceeeecccccCCC
Confidence 1 11122346777666666655543 468899882 569999999988999999988883
No 406
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.12 E-value=0.73 Score=50.18 Aligned_cols=189 Identities=13% Similarity=0.126 Sum_probs=95.8
Q ss_pred EEEecCCCEEEEEe---C----CeEEEEEcCCceeeEEecCCC---CCeEEEEEcCCCCCEEEEEe--------------
Q 001358 808 FALSKNDAYLFSAS---G----GVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGM-------------- 863 (1092)
Q Consensus 808 ~~~s~dg~~l~~~s---d----g~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~lasg~-------------- 863 (1092)
+-.-|+|+.++++- + |.+.++|-++.+......... ..-..+-+.| ..+.++|..
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TT
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChh
Confidence 34457888888772 1 458899999888877765432 2346677788 677777753
Q ss_pred ------CCCeEEEEEcCCceeeEeecccc--CCeEEEEEcCC--CCEE-EEEeCCCcEEEE-EcCCCceeeeeeeecCCC
Q 001358 864 ------DDSTILIYNARSSEVISKLEGHS--KRVTGLVFSDA--LNIL-VSSGGDAQIFVW-DVDGWGIQTCRSLQTPDG 931 (1092)
Q Consensus 864 ------~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~spd--g~~l-~s~s~Dg~i~iw-d~~~~~~~~~~~~~~~~~ 931 (1092)
...++.+||+.+.+.++++.--. ..+..+.|..+ ..+= +.+.-...|..| .-+.++....+++..+..
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 23489999999999998886422 23556777654 4443 333334444444 435666555556655433
Q ss_pred Cc------CC-------CCCceEEEEecCCCEEEEE--eCCcEEEEEcCCce---eeeeeccC-------C--------C
Q 001358 932 VM------TL-------APSETHIQFHKDQTRFLLV--HETHLAIYEAEELT---CLKQWFPI-------S--------S 978 (1092)
Q Consensus 932 ~~------~~-------~~~v~~l~~s~dg~~la~~--~d~~v~lwd~~~~~---~~~~~~~~-------h--------~ 978 (1092)
.. .. .+-|+.+.+|.|.++|.++ ..|.|+.||+.... ...+...+ | .
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~ 373 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR 373 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence 11 00 2358999999999999985 68999999997543 23222211 0 2
Q ss_pred cCEEEEEEecCCCEEEEEe
Q 001358 979 VPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 979 ~~v~~l~fs~dg~~l~t~s 997 (1092)
+...-+..|-||+.|...+
T Consensus 374 GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 374 GGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S----EEE-TTSSEEEEE-
T ss_pred CCCCeEEEccCCeEEEEEe
Confidence 3346678899998877654
No 407
>PRK13684 Ycf48-like protein; Provisional
Probab=95.99 E-value=3.2 Score=45.45 Aligned_cols=157 Identities=10% Similarity=0.027 Sum_probs=87.4
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcC
Q 001358 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 965 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~ 965 (1092)
.+.+.++.+.|++.++++ +..|.+.. ..+.+. .....+..... ..+.++++.++++.++++..|.+.+=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~-s~~~gg-~tW~~~~~~~~-----~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYS-TWEPGQ-TAWTPHQRNSS-----RRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEE-EcCCCC-CeEEEeeCCCc-----ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 456889999999876655 45564432 211111 11222222211 35889999999999888877766533344
Q ss_pred CceeeeeeccC---CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCC
Q 001358 966 ELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1042 (1092)
Q Consensus 966 ~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~ 1042 (1092)
.|..-.....+ ....+..+.|.+++..++ ++.+|.+. ...+.|+.-.........+. ..+ .+.+..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~-----~~~--~~~~~~-- 312 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPS-----NFY--KIVFLD-- 312 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCc-----ceE--EEEEeC--
Confidence 44433221111 234578899999887666 44677554 45565554333221111111 123 344442
Q ss_pred CCEEEEEeCCCcEEEEecC
Q 001358 1043 PTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1043 ~~~l~~~~~dg~v~~w~~~ 1061 (1092)
++....++..|.|-.|+-.
T Consensus 313 ~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 313 PEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCceEEECCCceEEEecCC
Confidence 3456667788998887754
No 408
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.96 E-value=2.2 Score=43.77 Aligned_cols=204 Identities=16% Similarity=0.227 Sum_probs=121.9
Q ss_pred cccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001358 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 811 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s 811 (1092)
+....+.+++|+|+.+.|++........++= ...|..+.+..+.+ -.....+.+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyi 137 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYI 137 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEe
Confidence 3445599999999999999998876555432 23455566666654 2334567777
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCceeeEE-------ec--CC-CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce---
Q 001358 812 KNDAYLFSAS-GGVISLYIVMTFKTILT-------IM--PP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--- 877 (1092)
Q Consensus 812 ~dg~~l~~~s-dg~i~iwd~~~~~~~~~-------~~--~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--- 877 (1092)
.+|+++++-- ++.+.++.+.....+.. +. .+ ....-.+||+| .+..|..+-+-.-+.||....+.
T Consensus 138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence 7888777665 57788777665432221 11 12 44567899999 66677777777767777665332
Q ss_pred eeEeeccc-------cCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC
Q 001358 878 VISKLEGH-------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 878 ~~~~l~~h-------~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
.+.....+ -..|.++.|.+ .+.+|+-+.+++.+.-.|....-...........+-...-.....+++.++|.
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 11111112 23467788876 45666767778878777777643222112222222221113456788888888
Q ss_pred EEEEEeCCcEEE
Q 001358 950 RFLLVHETHLAI 961 (1092)
Q Consensus 950 ~la~~~d~~v~l 961 (1092)
+-+++..+-.+.
T Consensus 297 lYIvSEPnlfy~ 308 (316)
T COG3204 297 LYIVSEPNLFYR 308 (316)
T ss_pred EEEEecCCccee
Confidence 777765554443
No 409
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.87 E-value=3.1 Score=44.28 Aligned_cols=230 Identities=11% Similarity=0.069 Sum_probs=110.9
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEec---CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-cee-
Q 001358 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEV- 878 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~- 878 (1092)
...++.|..+ ..++++..+ +.+...+.|+.-..+. .-.+....+.... ++..++ ++..|.| |...+ |+.
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~i--y~T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAI--YRTTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--E--EEESSTTSSE
T ss_pred eEEEEEecCC-ceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcE--EEeCCCCCCe
Confidence 4567777654 445555545 3334444343332221 1222333333333 333333 3444543 33333 321
Q ss_pred eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCc
Q 001358 879 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 958 (1092)
Q Consensus 879 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~ 958 (1092)
......-.+.+..+.-++||+++++++.-....-||-.... ......... ..|..+.|+||+.+.+++..+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~~-----~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNSS-----RRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--SS-----S-EEEEEE-TTS-EEEEETTTE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCcc-----ceehhceecCCCCEEEEeCCcE
Confidence 22233445778899999999999887766666677765422 112222211 3699999999999988888888
Q ss_pred EEEEE-cCCceeeeee-cc--CCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccce
Q 001358 959 LAIYE-AEELTCLKQW-FP--ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus 959 v~lwd-~~~~~~~~~~-~~--~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
|+.=+ ....+..... .+ ...-.+..++|.+++...++|+ .|+ .+...+.|+.-.+.......+.. ++
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~-l~~S~DgGktW~~~~~~~~~~~n-----~~-- 279 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGT-LLVSTDGGKTWQKDRVGENVPSN-----LY-- 279 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT--EEEESSTTSS-EE-GGGTTSSS----------
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-Ccc-EEEeCCCCccceECccccCCCCc-----eE--
Confidence 88877 2223222211 11 1244588999999988877665 454 45677778776666544444444 44
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEE
Q 001358 1035 AIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus 1035 ~~~~~p~~~~~l~~~~~dg~v~~w 1058 (1092)
.+.|.+ ++.-.+.+.+|.|--|
T Consensus 280 ~i~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 280 RIVFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEEE--TTEEEEE-STTEEEEE
T ss_pred EEEEcC--CCceEEECCCcEEEEe
Confidence 455543 2455566688877655
No 410
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.83 E-value=0.27 Score=42.44 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=65.0
Q ss_pred ceEEee---cCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE
Q 001358 337 PMSMDF---HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 337 V~~v~~---spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
|+++++ .-||..-|++|+.|..|+||+=+ +.+.. + ...+.|++++-... .+++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E--i------------------~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE--I------------------TETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE--E------------------ecccceEEEEEcCC-CEEEE
Confidence 455554 55676679999999999999944 33322 1 14567888887766 66888
Q ss_pred EeCCCEEEEEEccCCCCccceEEecccccceeEEEee---CCCCcEEEEEEeCCCcEE
Q 001358 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS---APCKQISVITCGDDKTIK 468 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s---~d~~~l~l~s~~~d~~i~ 468 (1092)
+..+|+|-+|+-.. +.. ..+... .++++++. .||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~----RlW-RiKSK~-~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQ----RLW-RIKSKN-QVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcc----eee-eeccCC-CeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 99999999987643 111 222222 25555443 34443 588888888764
No 411
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.70 E-value=1.8 Score=42.41 Aligned_cols=137 Identities=14% Similarity=0.093 Sum_probs=77.4
Q ss_pred ccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC--------cceEEEeecccCCc-cEEEEEecCCeE
Q 001358 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG--------APVYSLCPHAKENI-HFIFSISVDGKI 511 (1092)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--------~~v~~i~~~~~~~~-~~l~s~~~dg~i 511 (1092)
..+.+.-..+|+|+ +++-.-.|-.- +.....|..-.-+.+|. .--+.++|. .+. .+.+.-+.+-.|
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd--~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWD--SDAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCc--eeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCcccccc--ccCcEEEEEccCceEE
Confidence 34667778899999 43322122111 11111222222222332 223445564 233 344555667778
Q ss_pred EEEEcC--CC-----CceEEecC----CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCc
Q 001358 512 KAWLYD--SL-----GARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 580 (1092)
Q Consensus 512 ~vwd~~--~~-----~~~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 580 (1092)
.-||.+ ++ +.+..+.. .......+++..+|+..+++-. .++|+..|+.+|+.+..+.-.. ..
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt---~q 255 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPT---PQ 255 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCC---Cc
Confidence 778743 22 22222222 1112345666778888777764 5569999999999999998876 88
Q ss_pred eEEEEEcCC
Q 001358 581 VSVVHFDTA 589 (1092)
Q Consensus 581 v~~~~~~~~ 589 (1092)
+++++|...
T Consensus 256 itsccFgGk 264 (310)
T KOG4499|consen 256 ITSCCFGGK 264 (310)
T ss_pred eEEEEecCC
Confidence 999999754
No 412
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.62 E-value=2.5 Score=41.53 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=39.2
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcC
Q 001358 807 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 853 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 853 (1092)
.+++..+|.+.++.- .++|.-.|..+|+.+..+.-+...|++++|--
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 455566777766664 68999999999999999998999999999964
No 413
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.62 E-value=3.2 Score=42.64 Aligned_cols=171 Identities=13% Similarity=0.192 Sum_probs=107.9
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001358 839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~ 917 (1092)
+.+....+.++.|+| +.+.|++......-.|+=...|+.+.++.- --.....+.+..+|++.++--.++.+.+..++.
T Consensus 81 i~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 344556699999999 777777777777777776677888877652 122345688888888888888899999998876
Q ss_pred Ccee-eeeeeecCCCCcCC-CCCceEEEEecCCCEEEEEeCC-cEEEEEcCCce-eeee-eccCC-------CcCEEEEE
Q 001358 918 WGIQ-TCRSLQTPDGVMTL-APSETHIQFHKDQTRFLLVHET-HLAIYEAEELT-CLKQ-WFPIS-------SVPISQAT 985 (1092)
Q Consensus 918 ~~~~-~~~~~~~~~~~~~~-~~~v~~l~~s~dg~~la~~~d~-~v~lwd~~~~~-~~~~-~~~~h-------~~~v~~l~ 985 (1092)
.... .....+..-+.... ......+||.|.+..|..+.+. -+.||.++.+. .+.. ....+ -..|+++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 5321 11111111111111 2357899999999988887554 46666665332 1110 01111 23567777
Q ss_pred Eec-CCCEEEEEeCCCcEEEEECCCC
Q 001358 986 FSC-DCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 986 fs~-dg~~l~t~s~Dg~i~vwd~~~~ 1010 (1092)
|.+ .+.+|+-+.+++.+.-.|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 875 4556666666777777776644
No 414
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.61 E-value=0.032 Score=54.19 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=71.1
Q ss_pred EEEEE-eCCeEEEEEcCCceee-EEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecccc-CCeEEE
Q 001358 816 YLFSA-SGGVISLYIVMTFKTI-LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGL 892 (1092)
Q Consensus 816 ~l~~~-sdg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l 892 (1092)
-+++| ++|.|.+|........ .....-...|-++.-.-+++.+..+++.||.|+.|++.-++.+.....|. .++..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 34444 5899999987622211 11111223333333333356699999999999999999999888888888 677777
Q ss_pred EEcCCCCEEEEE--eCCCcEEEEEcCC
Q 001358 893 VFSDALNILVSS--GGDAQIFVWDVDG 917 (1092)
Q Consensus 893 ~~spdg~~l~s~--s~Dg~i~iwd~~~ 917 (1092)
..+..++.++++ |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 777777788887 8888888888875
No 415
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.58 E-value=1.9 Score=47.06 Aligned_cols=253 Identities=10% Similarity=0.049 Sum_probs=106.1
Q ss_pred CccEEEEEe-cCCeEEEEEcCCCC--c--eEEecC---CC----CceEEEEEecCCCEEEEEec--CCCCceeEEEEeCC
Q 001358 498 NIHFIFSIS-VDGKIKAWLYDSLG--A--RVDYDA---PG----LGCTRMAYSANGRRLFSCGT--SKEGESFLVEWNES 563 (1092)
Q Consensus 498 ~~~~l~s~~-~dg~i~vwd~~~~~--~--~~~~~~---~~----~~i~~~~~s~dg~~l~~~~~--~~~~~~~i~iwd~~ 563 (1092)
+.++|+..+ ..++|.|.|+.+.- + ...++. .. .....+-.-|+|+.++++-. ++++.+-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345676666 67889999987432 1 112221 00 12233445589988887654 34556678899988
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe--------------------CCCeEEEEECCCCceEEEEeCCCCCC
Q 001358 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--------------------DDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
+.+.............--+.+.+.|..+.+++.. ...++.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 8888877765442223456678888888888854 23679999999999999998764322
Q ss_pred CCceEEEc--cCCCEEEEEeC-CCeEEEEEC-CCCCeee--ecccccccceeeeecCC-cccccccccCCceeecCCCCC
Q 001358 624 ENPRICFN--KNGTLLAVIAN-ENRIKILET-PESNSVD--AAGVLSDNLRKLSVNPI-STVTGAGIANGSVSVNEDPKE 696 (1092)
Q Consensus 624 ~v~~v~~s--~~~~~l~~~~~-dg~i~iw~~-~~~~~~~--~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~ 696 (1092)
....+.|. |+..+-++++. ..+|..|-- ..+.... .+......+..-.+-+. ....++.+-.-.+.+ |.
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i----Sl 321 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI----SL 321 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-----T
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE----cc
Confidence 34456665 44444444332 344544433 3332111 11100000000000000 000000000001112 45
Q ss_pred Ccccc-eeeccccccceeceeec-cCccceecccCCc------------cccccEEEEEEecCCcEEEEeec
Q 001358 697 DVKPE-ISVEAENKSEVEKPLFA-RPSECQSLLLPSK------------VKANKISRLTYNNGGQAIFALAS 754 (1092)
Q Consensus 697 d~~~l-~s~~~d~~i~~w~~~~~-~~~~~~~~~~~~~------------~~~~~i~~l~~s~~g~~l~~~~~ 754 (1092)
|.++| +++-..|.+|.||+... .+.....+.+... .-.+...-+..|-||++|..+.+
T Consensus 322 DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 322 DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 66655 56677899999997532 2222222222111 11223356778888888877654
No 416
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.47 E-value=0.064 Score=38.41 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=28.7
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEcc
Q 001358 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 426 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~ 426 (1092)
...|.+++|+|...+||.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999994
No 417
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.45 E-value=1.2 Score=52.65 Aligned_cols=234 Identities=12% Similarity=0.084 Sum_probs=129.3
Q ss_pred cCCCEEEEEe-C------CeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCC-C-----eEEEEEcCCc
Q 001358 812 KNDAYLFSAS-G------GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD-S-----TILIYNARSS 876 (1092)
Q Consensus 812 ~dg~~l~~~s-d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d-g-----~v~iwd~~~~ 876 (1092)
..+.++++|+ . ..+..||..++.-.. .+. ....-.++++. ++.+.++|+.| | ++..||..+.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 3455555554 2 348888888764332 222 22233455555 56788899999 3 7788888776
Q ss_pred ee--eEeeccccCCeEEEEEcCCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC
Q 001358 877 EV--ISKLEGHSKRVTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 877 ~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
+= +..+........... -+|.+.|+||.||. |-.||..+.+......+... .-..-.-.-+|+
T Consensus 360 ~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGK 429 (571)
T ss_pred ceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCE
Confidence 42 223322222222222 27889999999974 67788777553321111111 112233345666
Q ss_pred EEEE-EeC------CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCc-----EEEEECCCCceEEeec
Q 001358 950 RFLL-VHE------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-----LSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 950 ~la~-~~d------~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~-----i~vwd~~~~~~~~~~~ 1017 (1092)
+.++ |.+ .++..||..+..........-...-.. .-.-++...+.||.|+. |..||..+.+....-
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~- 507 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA- 507 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc-
Confidence 6666 323 358889988776443211111111112 23457788888888863 777888877665221
Q ss_pred cccccCCCCccCcccceEEEECCCCCCEEEEEeCCC-----cEEEEecCCCCCccccCCC
Q 001358 1018 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1072 (1092)
Q Consensus 1018 ~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~~ 1072 (1092)
..... .....++.. ++...++|+.|| +|..||. ...+|...++
T Consensus 508 ---~m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp--~~d~W~~~~~ 555 (571)
T KOG4441|consen 508 ---PMTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP--ETDTWTEVTE 555 (571)
T ss_pred ---cCccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCC--CCCceeeCCC
Confidence 11111 111112222 468899999887 5667765 5566877766
No 418
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.29 E-value=0.046 Score=39.12 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=29.4
Q ss_pred CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCc
Q 001358 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK 369 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~ 369 (1092)
..|.+++|+|... |+|.|+.+|.|.|+.+ +++.
T Consensus 12 ~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 4799999999998 8999999999999998 5554
No 419
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.20 E-value=5.1 Score=48.76 Aligned_cols=204 Identities=12% Similarity=0.098 Sum_probs=118.2
Q ss_pred CCCEEEEEeCCeEEEEEcCCceeeEEecCCCCC--------eEEEEEcC---------------CCCCEEEEEeCCCeEE
Q 001358 813 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPT--------ATSLAFNP---------------HDNNVIAIGMDDSTIL 869 (1092)
Q Consensus 813 dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~d~~~lasg~~dg~v~ 869 (1092)
++.++++..++.|.-.|..+|+.+.++...... .+.+++.. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 454444444788888999999888776543211 12233321 0234788899999999
Q ss_pred EEEcCCceeeEeeccccCCeE-------------EEEEcC--CCCEEEEEeC----------CCcEEEEEcCCCceeeee
Q 001358 870 IYNARSSEVISKLEGHSKRVT-------------GLVFSD--ALNILVSSGG----------DAQIFVWDVDGWGIQTCR 924 (1092)
Q Consensus 870 iwd~~~~~~~~~l~~h~~~V~-------------~l~~sp--dg~~l~s~s~----------Dg~i~iwd~~~~~~~~~~ 924 (1092)
-.|.++|+.+..+.. .+.|. .+.-+| .+..++.++. +|.|+-+|..+|+..-..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998877642 22211 111112 1345555542 688999999998854322
Q ss_pred eeecCCCCcC---------CCCCc-eEEEEecCCCEEEEE-------------------eCCcEEEEEcCCceeeeeecc
Q 001358 925 SLQTPDGVMT---------LAPSE-THIQFHKDQTRFLLV-------------------HETHLAIYEAEELTCLKQWFP 975 (1092)
Q Consensus 925 ~~~~~~~~~~---------~~~~v-~~l~~s~dg~~la~~-------------------~d~~v~lwd~~~~~~~~~~~~ 975 (1092)
-...+..... -...+ ...++.++..++... ..+.|.-.|.++|+..-.+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 1111100000 00111 234555555554431 123466678888887766544
Q ss_pred CC--------CcCEEEEEEec-CCC---EEEEEeCCCcEEEEECCCCceEEeec
Q 001358 976 IS--------SVPISQATFSC-DCR---MVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 976 ~h--------~~~v~~l~fs~-dg~---~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
.| .....-+.+.. ||+ .++.++.+|.+.+.|-++|+.+....
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 22 11122233433 664 78999999999999999999987643
No 420
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.19 E-value=10 Score=45.86 Aligned_cols=122 Identities=13% Similarity=-0.016 Sum_probs=80.0
Q ss_pred EEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCC-CcCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ceEEeeccc
Q 001358 942 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNL-EVQCRILST 1019 (1092)
Q Consensus 942 l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~-~~~~~~~~~ 1019 (1092)
.|+.|-..++++|....+++||+...+.++.....+ ...|+.+.+ .+..+++|...-+|.++..... +.+-.+. .
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fa-d 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFA-D 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEe-C
Confidence 567787779999999999999999888777655444 566777775 4556777776666666555443 3332332 1
Q ss_pred cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCccccCCCCCc
Q 001358 1020 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEI 1075 (1092)
Q Consensus 1020 ~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~ 1075 (1092)
...|. .|.. ++.- |-..+|.|..=|.+.+-.++..-++-....|.+.
T Consensus 1016 D~~pR-----~Vt~---~~~l-D~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~~ 1062 (1205)
T KOG1898|consen 1016 DPVPR-----HVTA---LELL-DYDTVAGADRFGNIAVVRIPPDVSEEASEDPTEL 1062 (1205)
T ss_pred CCccc-----eeeE---EEEe-cCCceeeccccCcEEEEECCCcchhhhccCCccc
Confidence 22221 1332 2222 4578999999999999999877766655555553
No 421
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.02 E-value=4.9 Score=41.25 Aligned_cols=191 Identities=12% Similarity=0.069 Sum_probs=112.4
Q ss_pred ccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001358 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1092)
Q Consensus 735 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg 814 (1092)
.-...+.|..+|..+-+++.-|.-.+ +.+++.+|+......++. ..--..++...|.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l--------------------~~~d~~tg~~~~~~~l~~---~~FgEGit~~~d~ 101 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSL--------------------RKVDLETGKVLQSVPLPP---RYFGEGITILGDK 101 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEE--------------------EEEETTTSSEEEEEE-TT---T--EEEEEEETTE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEE--------------------EEEECCCCcEEEEEECCc---cccceeEEEECCE
Confidence 34567888888888888877764333 334556666555555542 3333456666565
Q ss_pred CEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecccc-----CCe
Q 001358 815 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-----KRV 889 (1092)
Q Consensus 815 ~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~~V 889 (1092)
-+.++--++...+||..+.+.+.++.- .+.=..++. |++.|+.......++++|..+-+....+.-.. ..+
T Consensus 102 l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred EEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence 555555689999999999999988863 356666773 56677777767789999998877666554321 234
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC-------CCcCCCCCceEEEEecCCCEEEE
Q 001358 890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 890 ~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
.-|.+- +|...|=.=....|..-|..+|+.....-+.... .......-...+|+.|.+..+.+
T Consensus 178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~v 247 (264)
T PF05096_consen 178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFV 247 (264)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEE
T ss_pred EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEE
Confidence 446664 6666665555566777777777655432221110 11111235789999988776665
No 422
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.99 E-value=12 Score=45.44 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=66.9
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCceeeEEe--cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeeEeecc
Q 001358 808 FALSKNDAYLFSASGGVISLYIVMTFKTILTI--MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG 884 (1092)
Q Consensus 808 ~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~ 884 (1092)
.|+.|...++.+|-+..+++||+...++++.. +.....|+.+.+ .+..+++|...-.|.++..+. ++.+..+..
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 46678777888888999999999877666543 323566777777 455777777666665543332 333444432
Q ss_pred --ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001358 885 --HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 885 --h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~ 917 (1092)
-...|+++.+- |-..+|.+..=|.+.+-.+..
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 22346666665 445677777767666655543
No 423
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=0.082 Score=62.67 Aligned_cols=102 Identities=12% Similarity=0.124 Sum_probs=75.4
Q ss_pred cEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC
Q 001358 500 HFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 578 (1092)
..++.|+..|.+-..|+...-. ...-....++|++++|+.+|+.++.|-. +|.|.+||...++..+.+..+....
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~----~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLG----DGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccC----CCcEEEEEccCCcceeeeeecCCcc
Confidence 4688888888888887765322 1222334568999999999999998865 6779999999999999988877444
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
..+..+.+..++..++++...|. +|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 55555666667777888777776 5543
No 424
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.91 E-value=6.3 Score=43.99 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=79.6
Q ss_pred CCeeEEEEecCCCEEEEEe------------C-CeEEEEEcCC--ce--eeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001358 803 EAVPCFALSKNDAYLFSAS------------G-GVISLYIVMT--FK--TILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s------------d-g~i~iwd~~~--~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1092)
.....|+|.++|+++++-. . +.|.+++-.+ |+ ....+.........+++.+ ++ +++ ++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 3456899999999887752 1 2677776442 32 2234443444568899998 77 444 4444
Q ss_pred CeEEEEEcCCc-----e--e-eEeecc----ccCCeEEEEEcCCCCEEEEEeCC-------------------CcEEEEE
Q 001358 866 STILIYNARSS-----E--V-ISKLEG----HSKRVTGLVFSDALNILVSSGGD-------------------AQIFVWD 914 (1092)
Q Consensus 866 g~v~iwd~~~~-----~--~-~~~l~~----h~~~V~~l~~spdg~~l~s~s~D-------------------g~i~iwd 914 (1092)
...++.|.... + . +..+.. +......++|.|||.+.++.+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 43334454321 1 1 122322 13447789999999988866621 3344444
Q ss_pred cCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001358 915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
.++++. ..+. .+.. ....++|+++|+++++
T Consensus 171 pdg~~~---e~~a--~G~r----np~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 171 PDGGKL---RVVA--HGFQ----NPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCeE---EEEe--cCcC----CCccceECCCCCEEEE
Confidence 444331 1221 2222 3568999999999887
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.54 E-value=13 Score=45.10 Aligned_cols=94 Identities=10% Similarity=0.034 Sum_probs=56.2
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCC-ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceee
Q 001358 801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 879 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 879 (1092)
....|..+.++|+|++++..+...|.|..+.. +.....+.+....|.|=.+.- +..++
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~-------------------- 141 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF-------------------- 141 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc--------------------
Confidence 44678999999999999999877777766632 111111221112222222211 11111
Q ss_pred EeeccccCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCC
Q 001358 880 SKLEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 880 ~~l~~h~~~V~~l~~spd---g~~l~s~s~Dg~i~iwd~~~ 917 (1092)
...+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 1124456778888875 47888888889999999875
No 426
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.53 E-value=0.87 Score=52.98 Aligned_cols=113 Identities=13% Similarity=0.180 Sum_probs=78.2
Q ss_pred ceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe-cCCcceEEEeecccCCccEEEEEecCCeEEEEEc-----
Q 001358 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY----- 516 (1092)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~----- 516 (1092)
...-+.-|.-++ ..+.-+....+.|||...+...++-. ...+.|.++.|...++++.+++.+..+.|.++--
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 444555555555 44444455689999999887554332 3578899999999999999999999999999843
Q ss_pred CCCCc----eE--EecC-CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358 517 DSLGA----RV--DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 517 ~~~~~----~~--~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
....+ +. .+.. ..++|...+|.++|..++.++. .+.++|..
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECCC
Confidence 11111 11 2222 3367889999999998877643 48888753
No 427
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.42 E-value=0.067 Score=61.82 Aligned_cols=131 Identities=16% Similarity=0.198 Sum_probs=83.7
Q ss_pred ecccCCCCceEEeec----CCCceEEEEEcCcCcEEEEecCC--CCceeeeeeeeeecccccceeEEeeecCCCCcEEEE
Q 001358 329 TLIEGSSSPMSMDFH----PVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~s----pdg~~llasg~~d~~i~iwd~~~--~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
.++|.+++|-.++|- |.+.. + -|...|||++- |+......++ ....-...+.-+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~~-~-----vg~lfVy~vd~l~G~iq~~l~v~--------------~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGRR-L-----VGELFVYDVDVLQGEIQPQLEVT--------------PITPYGSDPQLV 186 (1283)
T ss_pred HHhcCCCCcccccccccCChHHHH-H-----hhhhheeehHhhccccccceEEe--------------ecCcCCCCccee
Confidence 456777788888883 44431 2 27788998863 4444332222 122334455666
Q ss_pred EECC---CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEe-----------eCCCCcEEEEEEeCCCcEE
Q 001358 403 VWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-----------SAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 403 ~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~-----------s~d~~~l~l~s~~~d~~i~ 468 (1092)
.|.| +.-++..+-.+++|++.++.+... . -+.+|...+..++| ||||+ .++.+..||.++
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVG 260 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccc
Confidence 6665 667777787888888877765432 1 24568777666654 88999 889999999888
Q ss_pred EEECC-----CCceeEEEecCC
Q 001358 469 VWDAV-----TGSRTYSFEGHG 485 (1092)
Q Consensus 469 vwd~~-----~~~~~~~~~~~~ 485 (1092)
.|.+- .-+|++..+.|.
T Consensus 261 f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 261 FYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeeeeeccccHhhhhccCCCC
Confidence 88643 234566666676
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.31 E-value=0.91 Score=54.51 Aligned_cols=93 Identities=15% Similarity=0.246 Sum_probs=63.3
Q ss_pred CcCEEEEEEecCCCEEEEEeCCCcEEEEECCC----------C--ceEEeecc-ccccCCCCccCcccceEEEECCC--C
Q 001358 978 SVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------L--EVQCRILS-TAYLRPTTSCLHVYPHAIAAHPL--K 1042 (1092)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~----------~--~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~p~--~ 1042 (1092)
.-.|..+.++++|++|+..|..| |.|-.+.. | ...|+..+ ...+-. .+..+....+.|||. +
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~--~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT--SNSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhcc--CCCCceEEEEEEcCCCCC
Confidence 56788999999999999988765 55555542 1 22343321 111111 133355568899995 3
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCccccCCCC
Q 001358 1043 PTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1073 (1092)
Q Consensus 1043 ~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~ 1073 (1092)
+..|++-+.|+++++||+.+...-|.+.+-.
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p~~v~~~~ 191 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHPWQVLSLS 191 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCCeEEEEcc
Confidence 5789999999999999998877767777633
No 429
>PHA03098 kelch-like protein; Provisional
Probab=94.06 E-value=2 Score=51.06 Aligned_cols=153 Identities=8% Similarity=-0.022 Sum_probs=73.7
Q ss_pred CccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCC--CceeEEEEeCCCCeEEEE
Q 001358 498 NIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 498 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~ 570 (1092)
++.+++.|+.++ .+..||..+..-...-..+.......+..-+++..+.||.... .-..+..||+.+++....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 456777777652 3666776654322111111111111222345666666663222 125688999887655332
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
-.... ..... ++ ...++..++.|+.+ ..+.+||..+.+....-..... .....+..-+++.++.|+.
T Consensus 422 ~~~p~-~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPI-SHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGGD 496 (534)
T ss_pred CCCCc-cccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEEECCEEEEEcCC
Confidence 21111 01111 12 22244555556532 2388899888765443222111 1111112236777777765
Q ss_pred C-----CeEEEEECCCCC
Q 001358 643 E-----NRIKILETPESN 655 (1092)
Q Consensus 643 d-----g~i~iw~~~~~~ 655 (1092)
+ ..+.+||..+.+
T Consensus 497 ~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cCCcccceeEEEeCCCCE
Confidence 4 467788877654
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.98 E-value=1.4 Score=51.47 Aligned_cols=122 Identities=8% Similarity=0.086 Sum_probs=76.4
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec-cccCCeEEEEEc--CCCCEEEEEeCCCcEEEEEc
Q 001358 839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHSKRVTGLVFS--DALNILVSSGGDAQIFVWDV 915 (1092)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~s--pdg~~l~s~s~Dg~i~iwd~ 915 (1092)
+...-..++-+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|. |||+.+++.|..+.|.++.-
T Consensus 25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333334455555555 45555555555689999999876432222 357889999985 78999999999999999864
Q ss_pred CC----CceeeeeeeecC--CCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEc
Q 001358 916 DG----WGIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 964 (1092)
Q Consensus 916 ~~----~~~~~~~~~~~~--~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~ 964 (1092)
.. ........++.. ..+.+ .+|....|.+||.++++ .++++.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV~-sGNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVVG-SGNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEEE-eCCEEEEECC
Confidence 21 111111122221 11221 36889999999986554 4667888764
No 431
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.98 E-value=2.2 Score=41.91 Aligned_cols=150 Identities=11% Similarity=0.095 Sum_probs=83.6
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE----eCC---cEEEE-EcC----C
Q 001358 899 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HET---HLAIY-EAE----E 966 (1092)
Q Consensus 899 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~----~d~---~v~lw-d~~----~ 966 (1092)
+.|..+.....|.+|++...+......+.+. +.|..++++.-|++|++- ... .+++| ++. .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-------hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 4444445667799999995443333333333 258899999999999993 122 46665 222 1
Q ss_pred ceeeeeeccCC---------------------CcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-EEeeccccccCC
Q 001358 967 LTCLKQWFPIS---------------------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV-QCRILSTAYLRP 1024 (1092)
Q Consensus 967 ~~~~~~~~~~h---------------------~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~ 1024 (1092)
...++....|| +.++.+++-.|-..-|+.|+ ++.+.+|.+..... ...+....+...
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~ 180 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERS 180 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhh
Confidence 22222212232 44566666666433445454 56899998876655 322222222111
Q ss_pred C-CccCcccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001358 1025 T-TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1025 ~-~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
. .|...+.+..+++. +.++|.. ++-.+++..+
T Consensus 181 l~~~~~~~~p~~v~ic---~~yiA~~-s~~ev~Vlkl 213 (215)
T PF14761_consen 181 LIDHIDNFKPTQVAIC---EGYIAVM-SDLEVLVLKL 213 (215)
T ss_pred hhheecCceEEEEEEE---eeEEEEe-cCCEEEEEEE
Confidence 1 13344556667776 3555555 5666777765
No 432
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.94 E-value=6.2 Score=40.01 Aligned_cols=193 Identities=12% Similarity=0.095 Sum_probs=125.3
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001358 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 924 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~ 924 (1092)
.-..++-+| ||..-+++...|.|--.|-.+|+....--+....-..+..-|||..-++-+.. .|.-.|-++.+...
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-- 138 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-- 138 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE--
Confidence 345677888 88888888888888888888988766655555666778888999877764433 45555665555333
Q ss_pred eeecCCCCcCCCCCceEEEEecCCCEEEEEeC----------CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEE
Q 001358 925 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE----------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 994 (1092)
Q Consensus 925 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d----------~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 994 (1092)
...+..+.. .......|.++|.+-.++.. +.|++|+.. .......||..|||...+
T Consensus 139 -f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-----------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 139 -FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-----------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred -eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------CCCCCcceEECCCCcEEE
Confidence 222222222 35778999999999888543 235555543 344567789999999988
Q ss_pred EEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001358 995 TSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 995 t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
+.-.+..|..-|..++. ...+.....+..+ +..+-.+|+ +..-++....+.++-+|.....
T Consensus 205 aslagnaiaridp~~~~-aev~p~P~~~~~g-------sRriwsdpi-g~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 205 ASLAGNAIARIDPFAGH-AEVVPQPNALKAG-------SRRIWSDPI-GRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EeccccceEEcccccCC-cceecCCCccccc-------ccccccCcc-CcEEEeccCCceeeEeCccccc
Confidence 87778888888877772 2223222221111 123445564 6777777777777777765433
No 433
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.94 E-value=0.19 Score=49.04 Aligned_cols=106 Identities=12% Similarity=0.050 Sum_probs=64.1
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEE-eeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001358 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA-FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~-~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
-+..+++|+.+|.|.+|++..-...... ...-...|.++. -..++. +..+++.|+.|+.|++.-++.+.....|.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~--~~s~~e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDR--VCSGEESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHh--hhcccccceeccccccccc--eeEEeccCCceeeeccccCceeeeecccc
Confidence 3568899999999999998732111100 111122333332 233344 67888999999999999998887777676
Q ss_pred -cceEEEeecccCCccEEEEE--ecCCeEEEEEcCC
Q 001358 486 -APVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDS 518 (1092)
Q Consensus 486 -~~v~~i~~~~~~~~~~l~s~--~~dg~i~vwd~~~ 518 (1092)
.++...... ..+.+++.+ |.|..++.|++..
T Consensus 145 ~~~~e~~ivv--~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVV--GSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEe--cCCceEEeeccccchhhhhcchhh
Confidence 444433332 123455555 5666666666543
No 434
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.36 E-value=1.2 Score=48.88 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=71.2
Q ss_pred CcCEEEEEEecCCCEEEEEeCCCcEEEEE---------CCCCc--eEEeeccccccCCCCccCcccceEEEECCCC--CC
Q 001358 978 SVPISQATFSCDCRMVFTSFVDGTLSIHE---------ASNLE--VQCRILSTAYLRPTTSCLHVYPHAIAAHPLK--PT 1044 (1092)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd---------~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~--~~ 1044 (1092)
.-.|..+..|+.|..++-.|.+|.+.++= +++|+ ..|+..... ..-...+.++....++|||+. ..
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~-~~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA-ERFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc-ceeeccCCceeeeeccccCCccCCc
Confidence 45677888899999999999998544331 23342 233332111 000012345666778999963 46
Q ss_pred EEEEEeCCCcEEEEecCCCCCccccCCCCCcccCCCCCCcccccC
Q 001358 1045 QFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRA 1089 (1092)
Q Consensus 1045 ~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1089 (1092)
.|+.-+.|..|++|++++....|..++|.-..+.-...-+=|+.+
T Consensus 182 hL~iL~sdnviRiy~lS~~telylqpgepgRS~tn~Si~sFGe~~ 226 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTELYLQPGEPGRSPTNVSILSFGEEE 226 (741)
T ss_pred eEEEEecCcEEEEEecCCcchhhccCCCcCCCCccceeeccCCcc
Confidence 788889999999999998888888877665544433333444443
No 435
>PHA03098 kelch-like protein; Provisional
Probab=93.28 E-value=2.6 Score=50.08 Aligned_cols=196 Identities=11% Similarity=0.005 Sum_probs=90.8
Q ss_pred CCCCEEEEEeCCC------EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC-----CcEEEEECCC
Q 001358 406 PDGSLLGVAYSKH------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVT 474 (1092)
Q Consensus 406 pdg~~las~~~d~------~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~ 474 (1092)
.++..++.|+.++ .+..||..+++-.. ...+.........+ .-+++ +++.||.+ ..+..||..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~--~~~~~--lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVT--VFNNR--IYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEE--EECCE--EEEEeCCCCCEecceEEEEcCCC
Confidence 3556666665432 47788887754321 11111111111222 23555 56667655 3577888877
Q ss_pred CceeEE--EecCCcceEEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEE
Q 001358 475 GSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 475 ~~~~~~--~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
++-... +....... +++. -++.+.+.|+.+ ..+..||..+.+=...-..+.......+...+++..+.
T Consensus 368 ~~W~~~~~lp~~r~~~-~~~~---~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 368 SKWREEPPLIFPRYNP-CVVN---VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVI 443 (534)
T ss_pred CceeeCCCcCcCCccc-eEEE---ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEE
Confidence 653321 11111111 1111 145666777632 34777877654322111111111111233345666666
Q ss_pred EecCCCC----ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceE
Q 001358 547 CGTSKEG----ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLL 613 (1092)
Q Consensus 547 ~~~~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~ 613 (1092)
||..... -..+.+||+.+++....-.... .......+.+ ++..++.|+.+ +.+.+||..+.+..
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNF-PRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCc-ccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 6543221 2348899998776543211111 0111222222 55556666643 46788887776543
No 436
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.18 E-value=19 Score=41.01 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=41.9
Q ss_pred eEEEEecCCCEEEEEeC--CcEEEEEcCCc--eeeeeeccCCCcCEEEEEEecCCCEEEEEeC
Q 001358 940 THIQFHKDQTRFLLVHE--THLAIYEAEEL--TCLKQWFPISSVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 940 ~~l~~s~dg~~la~~~d--~~v~lwd~~~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~ 998 (1092)
--+||.|....+|++++ +.|.||.+... ..++.+.-....+...++|-.|.-+|+..|.
T Consensus 342 DliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 342 DLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred ceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecc
Confidence 35899999999999655 57999988642 2233333334678888999988877776653
No 437
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.93 E-value=3.4 Score=44.69 Aligned_cols=145 Identities=8% Similarity=0.041 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc--e-eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001358 846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSS--E-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 922 (1092)
Q Consensus 846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~--~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~ 922 (1092)
.+.+-|.. .++.|+ +...|.+.=|-.... . ++..-....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus 25 sngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 34555654 333333 333454555554432 1 222222356799999999999999999999999999986543222
Q ss_pred eeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEe
Q 001358 923 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 923 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s 997 (1092)
........+. ..|....|+.. .-+|...+..+-+|-....+..-.....|...|.--.|.++-+.++-++
T Consensus 103 ~~~~~ck~k~----~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 103 EYTQECKTKN----ANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHHHhccCc----ceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 1111111111 24888888877 6677767777778876544433333556788888888999887655443
No 438
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.90 E-value=7.2 Score=45.35 Aligned_cols=185 Identities=12% Similarity=0.140 Sum_probs=99.2
Q ss_pred eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEe--e--ccccCCeEEEEEcCCCC
Q 001358 824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALN 899 (1092)
Q Consensus 824 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~spdg~ 899 (1092)
.|+||++. |..+..+.-..+.+..+.|+. + .-|++...+|++++|++.. +.+.. . +.....|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~-eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-D-EELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC-C-ceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence 37888874 555555443444888999996 4 4666688999999999864 32222 1 22233455566666664
Q ss_pred EEEEEeCCCcEE-EEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCE--EEEEeC--CcEEEEEcCCceeeeeec
Q 001358 900 ILVSSGGDAQIF-VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLVHE--THLAIYEAEELTCLKQWF 974 (1092)
Q Consensus 900 ~l~s~s~Dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~--la~~~d--~~v~lwd~~~~~~~~~~~ 974 (1092)
.+.+. +|.+. +-+++..... .+...++... .-.+....+++.. +...-+ -...++..+.+......+
T Consensus 141 avlt~--~g~v~~i~~~~~~~~~---~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLTV--SGQVILINGVEEPKLR---KMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEec--CCcEEEEcCCCcchhh---hCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 44443 34333 3333331111 1111111111 1133333333221 111111 011222222221111111
Q ss_pred cCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeecccc
Q 001358 975 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 975 ~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
....+.+..+..||+.++|+--..+|.|.+-+.+..+..+.+....
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~ 258 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD 258 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCC
Confidence 1113578889999999999999999999999999988888887433
No 439
>PRK13684 Ycf48-like protein; Provisional
Probab=92.87 E-value=17 Score=39.80 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=92.3
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeE
Q 001358 802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 880 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 880 (1092)
...+.++.+.+++.+++++..|.+..-.-..++.-.. .......++++++.+ +++.+++| ..|.+++=..+.|..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCccc
Confidence 4567889999999998888888655321112221222 223446789999999 78777665 46766532344443222
Q ss_pred eecc----ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeC
Q 001358 881 KLEG----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956 (1092)
Q Consensus 881 ~l~~----h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d 956 (1092)
.... -...+.++++.|++..++ ++.+|.|. ...+.++ ....+....+.. .....+.|..+++.++++..
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~--tW~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGK--TWEKDPVGEEVP---SNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCC--CCeECCcCCCCC---cceEEEEEeCCCceEEECCC
Confidence 1111 123578899999877655 55677554 4445433 111221111111 24778888889999999998
Q ss_pred CcEEEEEc
Q 001358 957 THLAIYEA 964 (1092)
Q Consensus 957 ~~v~lwd~ 964 (1092)
|.|.-|+-
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 88877763
No 440
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.76 E-value=11 Score=40.02 Aligned_cols=170 Identities=10% Similarity=0.061 Sum_probs=94.9
Q ss_pred eEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCC----CEEEEEe-CCCeEEEEEcCCceeeEeeccc-------
Q 001358 824 VISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAIGM-DDSTILIYNARSSEVISKLEGH------- 885 (1092)
Q Consensus 824 ~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~----~~lasg~-~dg~v~iwd~~~~~~~~~l~~h------- 885 (1092)
+|.+||+.+.+.++++.-+ ......+.+...++ .++..+. ..+-+.|+|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5889999999988876432 34567777765222 2444333 3358999999998754443321
Q ss_pred ------------cCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCceeee-----e----eeecCCCCcCCCCCceE
Q 001358 886 ------------SKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGWGIQTC-----R----SLQTPDGVMTLAPSETH 941 (1092)
Q Consensus 886 ------------~~~V~~l~~sp---dg~~l~s~s~Dg~i~iwd~~~~~~~~~-----~----~~~~~~~~~~~~~~v~~ 941 (1092)
.+.+..++.+| |+++|....-.+ -++|.+.+...... . .++.. +... .....
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKG--SQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccC--CCCce
Confidence 23366677765 666777665544 34555443211100 0 00110 0000 13567
Q ss_pred EEEecCCCEEEE-EeCCcEEEEEcCCce---eeeeec-cCC-CcCEEEEEEec--CCCEEEEEe
Q 001358 942 IQFHKDQTRFLL-VHETHLAIYEAEELT---CLKQWF-PIS-SVPISQATFSC--DCRMVFTSF 997 (1092)
Q Consensus 942 l~~s~dg~~la~-~~d~~v~lwd~~~~~---~~~~~~-~~h-~~~v~~l~fs~--dg~~l~t~s 997 (1092)
++++++|.+..+ ...+.|..|+..+.- ....+. ... -..+..+.+.+ +|.+.+.+.
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 899999998888 578899999987621 111111 122 35778888988 777666553
No 441
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.61 E-value=15 Score=38.32 Aligned_cols=214 Identities=12% Similarity=0.129 Sum_probs=123.4
Q ss_pred ceeEEEeeCCCCcEEEEEEeCCCcEEEEECC------CC-ceeEEEec-----CCcceEEEeecccC------C----cc
Q 001358 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TG-SRTYSFEG-----HGAPVYSLCPHAKE------N----IH 500 (1092)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~------~~-~~~~~~~~-----~~~~v~~i~~~~~~------~----~~ 500 (1092)
.-+.++|+|.+. +-++...-+...+||.. .. ..+-++.. .....+.+.|+... + ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 457899999987 67777778889999986 12 22333332 12345555554321 1 12
Q ss_pred EEEEEecCCeEEEEEcCCCCc-----eEEecC--CCCceEEEEEecC--CCEEEEEecCCCCceeEEEEeCCCCeEE--E
Q 001358 501 FIFSISVDGKIKAWLYDSLGA-----RVDYDA--PGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIK--R 569 (1092)
Q Consensus 501 ~l~s~~~dg~i~vwd~~~~~~-----~~~~~~--~~~~i~~~~~s~d--g~~l~~~~~~~~~~~~i~iwd~~~~~~~--~ 569 (1092)
.++.+++||+|.-|...-... ...+.. ...-...+++... +.+|+.+-. ..++|.++|-.-.... .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 478889999999997532222 122221 1223445666543 566766543 2567888875432211 0
Q ss_pred EEeeccc--cCCc-----------eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc----
Q 001358 570 TYQGLQL--QHNS-----------VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---- 632 (1092)
Q Consensus 570 ~~~~~~~--~~~~-----------v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 632 (1092)
.+..... .-.+ |+-..-.++...=+.|..-|.|-+||. .|.+++++...+....-..++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 1111000 0000 111111222222333445578999997 578888887666555667777755
Q ss_pred --CCCEEEEEeCCCeEEEEECCCCCeeeeccc
Q 001358 633 --NGTLLAVIANENRIKILETPESNSVDAAGV 662 (1092)
Q Consensus 633 --~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1092)
.+.+|+---.||+|..||..+++.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 467777777799999999998887766664
No 442
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.39 E-value=8.4 Score=38.02 Aligned_cols=112 Identities=12% Similarity=0.170 Sum_probs=68.2
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcC--CceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC------eEEEE---E
Q 001358 804 AVPCFALSKNDAYLFSASGGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS------TILIY---N 872 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg------~v~iw---d 872 (1092)
+...++-+..+.++++++.+.|.+|++. ..+...+|..- +.|..++++. .|++|+|--.+. .+|+| +
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 3345555554555555678899999988 34556666643 7899999999 899999854332 55664 3
Q ss_pred cC--Ccee-eEeeccc---------------------cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001358 873 AR--SSEV-ISKLEGH---------------------SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 918 (1092)
Q Consensus 873 ~~--~~~~-~~~l~~h---------------------~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~ 918 (1092)
.. ..+. ..++-|| +.++.+++-.|-..-|+.|+ ++.+.+|.+...
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 22 1111 1122232 24566777777443444444 456999988763
No 443
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.33 E-value=4.3 Score=45.33 Aligned_cols=103 Identities=9% Similarity=0.099 Sum_probs=57.0
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEEcCCC--ceeeeeeeecCCCCcCCCCCceEEEEecCCCEEE
Q 001358 887 KRVTGLVFSDALNILVSSG-----------GDA-QIFVWDVDGW--GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s~s-----------~Dg-~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 952 (1092)
.....|+|.++|+++++-. ..+ .|.+++-..+ .......+..... ....+++.++| +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~------~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELS------MVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCC------CccceeEecCC-EEE
Confidence 3466789999998887653 223 5777765432 2222222222111 35789999999 544
Q ss_pred EEeCCcEEEE-EcCC-------ceeeeeeccC----CCcCEEEEEEecCCCEEEEEe
Q 001358 953 LVHETHLAIY-EAEE-------LTCLKQWFPI----SSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 953 ~~~d~~v~lw-d~~~-------~~~~~~~~~~----h~~~v~~l~fs~dg~~l~t~s 997 (1092)
+. ...|..| |... .+.+..-+.. +......++|.|||.+.++-+
T Consensus 87 ~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 87 AT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 43 4445544 4431 1112121211 234577899999998777655
No 444
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.26 E-value=23 Score=39.69 Aligned_cols=201 Identities=12% Similarity=0.017 Sum_probs=105.2
Q ss_pred EecCCCEEEEEeCCeEEEEEcCCceeeEEecCCC--CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecccc-
Q 001358 810 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS- 886 (1092)
Q Consensus 810 ~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~- 886 (1092)
...|++.++...+|.+.-.|..+++.+....... ..+..-.+.. +|+ ++.++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 4456766666667888888888887664433221 2333333333 565 6778899999999998999888777555
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe--CCcEEEEEc
Q 001358 887 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEA 964 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--d~~v~lwd~ 964 (1092)
-.+..-..-.++..++ .+.++.+.-.+-.+++..-.......... .+..-....++...+... ++.+.-.|.
T Consensus 143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAPLSL-----SIYGSPAIASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCcccc-----ccccCceeecceEEEecCCCcceEEEEEc
Confidence 1122222222332222 23566666666665543221111110000 011111133444433333 445666677
Q ss_pred CCceeeeeeccCCCcC---EEEEEEec-----CCCEEEEEeCCCcEEEEECCCCceEEeecc
Q 001358 965 EELTCLKQWFPISSVP---ISQATFSC-----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~---v~~l~fs~-----dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
.+|.........+... +....... .+.-+..++.++.+.-.+..+|+.+.++..
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 7776665422111111 10011111 112235666778888889999999888774
No 445
>PHA02790 Kelch-like protein; Provisional
Probab=92.19 E-value=5.9 Score=46.07 Aligned_cols=184 Identities=11% Similarity=-0.010 Sum_probs=93.4
Q ss_pred CCCEEEEEe-C-----CeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCce--eeE
Q 001358 813 NDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSE--VIS 880 (1092)
Q Consensus 813 dg~~l~~~s-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~--~~~ 880 (1092)
++.++++|+ + ..+..||..+.+-.. .+.........++ - ++.+.+.|+.++ .+..||..+++ .+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455555554 2 246778877654322 2222222222222 3 677888888643 67888876543 222
Q ss_pred eeccccCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCC
Q 001358 881 KLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 957 (1092)
Q Consensus 881 ~l~~h~~~V~~l~~spdg~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~ 957 (1092)
.+.........+ .-+|+..+.||.++ .+..||..+++......+..+. -...+..-+|++.++| |
T Consensus 348 ~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r--------~~~~~~~~~~~IYv~G--G 415 (480)
T PHA02790 348 SLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH--------YKSCALVFGRRLFLVG--R 415 (480)
T ss_pred CCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc--------ccceEEEECCEEEEEC--C
Confidence 332111111222 23688888888654 4678888775533322221111 1122334566666665 3
Q ss_pred cEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCce
Q 001358 958 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 1012 (1092)
Q Consensus 958 ~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~D-----g~i~vwd~~~~~~ 1012 (1092)
.+.+||..+.+-...-...+...-.+++ .-+|+..+.||.+ .++..||..+++.
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 5778888766543221111111111222 3477888888765 3466777766544
No 446
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.90 E-value=18 Score=37.73 Aligned_cols=251 Identities=11% Similarity=0.084 Sum_probs=123.4
Q ss_pred CceEEEccCCCEEEEEeCCCeEEEEECCCC-------Ceeeeccc-----ccccceeeeecCCcccccccccCCceeecC
Q 001358 625 NPRICFNKNGTLLAVIANENRIKILETPES-------NSVDAAGV-----LSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1092)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1092)
-..++++|.+.+-++....+...+||.... ..+-.+.. .....+.+.|+........+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~---------- 94 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG---------- 94 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC----------
Confidence 468999999888777777889999998621 11112211 11123333343222111111
Q ss_pred CCCCCcccceeeccccccceeceeeccC---ccceecccCCccccccEEEEEEec--CCcEEEEeec-CCeeEEeeecCC
Q 001358 693 DPKEDVKPEISVEAENKSEVEKPLFARP---SECQSLLLPSKVKANKISRLTYNN--GGQAIFALAS-NGVHLMWRWPRN 766 (1092)
Q Consensus 693 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~s~--~g~~l~~~~~-dg~i~lw~~~~~ 766 (1092)
........++.+++||+|.-|....... ..... ........--..+++.. .+.+|.++.- +++|.+||-...
T Consensus 95 ~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~--~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 95 EGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIV--VDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred CCcccceeEEEEeCCceEEeecCcCCcccccccEEE--EccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 0011123367889999999999543333 11111 11111122223455443 3555555543 578888775443
Q ss_pred ccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-eCCeEEEEEcCCceeeEEecC--CC
Q 001358 767 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMP--PS 843 (1092)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~--~~ 843 (1092)
+....+...... +..+....- +.-.+..--|+-..-.++++.=+.+ .-|.|-+||.. |..++++.. .-
T Consensus 173 ~~~~~g~F~DP~------iPagyAPFn--Iqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~L 243 (336)
T TIGR03118 173 PPPLPGSFIDPA------LPAGYAPFN--VQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRL 243 (336)
T ss_pred cccCCCCccCCC------CCCCCCCcc--eEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcc
Confidence 322212111000 000000000 0000000000101111122111112 13679999985 777777742 22
Q ss_pred CCeEEEEEcC-----CCCCEEEEEeCCCeEEEEEcCCceeeEeeccccC------CeEEEEEcC
Q 001358 844 PTATSLAFNP-----HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK------RVTGLVFSD 896 (1092)
Q Consensus 844 ~~i~~l~~s~-----~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~------~V~~l~~sp 896 (1092)
+.-..|+..| -.+.+|+---.||+|..||..+|+.+..+..-.+ .++.|+|-.
T Consensus 244 NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 244 NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 3445666544 2567888777899999999999998888775433 456677754
No 447
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.52 E-value=5.7 Score=46.98 Aligned_cols=176 Identities=13% Similarity=0.087 Sum_probs=93.8
Q ss_pred CCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEE
Q 001358 814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 893 (1092)
Q Consensus 814 g~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 893 (1092)
+.+++++..+.|.||+........ ...++..+...| .+ +...|+.+..|. . .|+=.-..+.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p--~--------PHtIN~i~v~ 109 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP--F--------PHTINFIKVG 109 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC--C--------CceeeEEEec
Confidence 788888999999999986432211 011112222222 11 122344333332 1 1221111122
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCc---------ee--eeeeeecCCCCcCCCCCceEEEEe--cCCCEEEEEeCC-cE
Q 001358 894 FSDALNILVSSGGDAQIFVWDVDGWG---------IQ--TCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHET-HL 959 (1092)
Q Consensus 894 ~spdg~~l~s~s~Dg~i~iwd~~~~~---------~~--~~~~~~~~~~~~~~~~~v~~l~~s--~dg~~la~~~d~-~v 959 (1092)
.--+...|+.+.+||.|.+|.+++-- .. .......+.-........+++++. ...++||+++++ .|
T Consensus 110 ~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~V 189 (717)
T PF08728_consen 110 DLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEV 189 (717)
T ss_pred ccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceE
Confidence 22345678888888888888653200 00 000000011111122468899998 888899997654 46
Q ss_pred EEEEcCC--ceeeeeeccCCCcCEEEEEEecCC---C---EEEEEeCCCcEEEEECC
Q 001358 960 AIYEAEE--LTCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 960 ~lwd~~~--~~~~~~~~~~h~~~v~~l~fs~dg---~---~l~t~s~Dg~i~vwd~~ 1008 (1092)
.||-... .+........|...|-++.|-++. . +|++++-.|.+.+|++.
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 6654433 221111112356789999997754 2 78888899999998883
No 448
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.44 E-value=0.29 Score=56.96 Aligned_cols=235 Identities=16% Similarity=0.175 Sum_probs=122.6
Q ss_pred CeEEEEEcC--CceeeEE-----ecCCCCCeEEEEEcCC--CCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEE
Q 001358 823 GVISLYIVM--TFKTILT-----IMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 893 (1092)
Q Consensus 823 g~i~iwd~~--~~~~~~~-----~~~~~~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 893 (1092)
|.+.|||+. .|+.... .......+.-+.|.|. +..++..+..+++|++....+... ..+.+|+..++.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 678888875 3433222 2222333344444431 456778888889999877765432 55566887776654
Q ss_pred -----------EcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCC---------CEEEE
Q 001358 894 -----------FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ---------TRFLL 953 (1092)
Q Consensus 894 -----------~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg---------~~la~ 953 (1092)
.||||+.+|.++.||.++.|.+.-......+++..-+.|.. .+-.|.-|...- .++++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence 48999999999999999999876432223334443333332 122222233321 22334
Q ss_pred EeC--CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC------------EEEEEeCCCcEEEEECCCCceEEeeccc
Q 001358 954 VHE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR------------MVFTSFVDGTLSIHEASNLEVQCRILST 1019 (1092)
Q Consensus 954 ~~d--~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~------------~l~t~s~Dg~i~vwd~~~~~~~~~~~~~ 1019 (1092)
+.| ..+++|.....+|+..+. ...|..+. -+||+ .+++.+-|++|.+|.-..- +.....
T Consensus 310 ttd~nre~k~w~~a~w~Cll~~~---~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a---~~~~vs 382 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCLLDKL---IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKA---QPLVVS 382 (1283)
T ss_pred cccCCcceeEeeccchhhhhhhc---ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchh---hhhhhh
Confidence 433 458999887777763221 12333333 33332 1344556788888854331 111111
Q ss_pred cccCCCCccCcccceEEEECCC--CCCEEEEEeC-CCcEEEEecCCCCCccccCCCCC
Q 001358 1020 AYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLT-NGEVYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus 1020 ~~~~~~~~~~~v~~~~~~~~p~--~~~~l~~~~~-dg~v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
. +.. +.+|.+.-...+|. +-..+.+|+. ...+.+|...-.+ +++.|.+
T Consensus 383 ~--~~~--~hpV~S~i~v~S~~R~~h~e~~~~~~~nr~~~i~~s~g~~---g~ls~a~ 433 (1283)
T KOG1916|consen 383 R--PHD--GHPVLSAIFVTSPERPDHIELITGGPLNRELKIWVSAGEE---GWLSPAD 433 (1283)
T ss_pred h--hhh--cceeccccccccCCCccccccccCCcchhhhhhhhhcccc---cccchhh
Confidence 1 111 22344333344442 1123444444 3456788775444 4455555
No 449
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.14 E-value=30 Score=38.78 Aligned_cols=150 Identities=8% Similarity=0.024 Sum_probs=86.2
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce-eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee---
Q 001358 846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--- 921 (1092)
Q Consensus 846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~--- 921 (1092)
...+..++ ++.++++|..-..++-||--... .... ..-...++++.|.+++.+++.+ .+|.+ +|....+..-
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~-~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHN-RASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEec-CCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence 34456677 77777766544333334432110 1111 2234568999999998887755 66654 4444443211
Q ss_pred eeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeec--cCCCcCEEEEEEecCCCEEEEEeCC
Q 001358 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFVD 999 (1092)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~t~s~D 999 (1092)
....+...... ..+.++.|.+++..++++..|.+.... ..|+.-.... ..-......+.|.++++.+++| .+
T Consensus 317 ~f~~~~~~~~~----~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~ 390 (398)
T PLN00033 317 DFEEADIKSRG----FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-ND 390 (398)
T ss_pred ceeecccCCCC----cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CC
Confidence 11111111111 147899999999999999888776654 3444332222 2224578899998888777755 67
Q ss_pred CcEEEE
Q 001358 1000 GTLSIH 1005 (1092)
Q Consensus 1000 g~i~vw 1005 (1092)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 877654
No 450
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.11 E-value=32 Score=39.07 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=41.7
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC
Q 001358 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
++...-+..+.|+|.|||+ +|++--..|.|++++-.++.......+ ..............|+|+|+-
T Consensus 24 ~va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 3344445889999999997 677654469999998665542211111 000011136778899999874
No 451
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.00 E-value=10 Score=36.84 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=61.2
Q ss_pred CCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeE--EEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccC
Q 001358 813 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTAT--SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 887 (1092)
Q Consensus 813 dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~--~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 887 (1092)
+|+++.+.+ ...|++||+.+++.+..-.-....+. .+.-. ++.+.+-...+|.-..+|.++.+++..+. -.+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 556666665 35699999999988765432221111 11111 33455556778999999999988887765 333
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001358 888 RVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 888 ~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~ 917 (1092)
.=+.++ .|++-|..++...+++.-|-++
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHH
Confidence 344444 3666677665555666666554
No 452
>PHA02790 Kelch-like protein; Provisional
Probab=90.97 E-value=10 Score=44.16 Aligned_cols=149 Identities=9% Similarity=-0.016 Sum_probs=72.8
Q ss_pred CccEEEEEecCC--eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001358 498 NIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 498 ~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
++.+.+.|+.++ .+..||..+.+-...-..+.......+..-+|+..+.||.++. ...+..||+.+.+-...-.-..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCC
Confidence 556777777543 4677776543221111111111122233446776667665332 3567889988776543211111
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-----CeEEEEE
Q 001358 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILE 650 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~ 650 (1092)
.......+ .-++...+.| |.+.+||..+.+....-..... ....-+..-+++..++|+.+ ..+..||
T Consensus 397 -~r~~~~~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~--r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 397 -PHYKSCAL--VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYP--RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred -ccccceEE--EECCEEEEEC---CceEEecCCCCcEeEcCCCCCC--ccccEEEEECCEEEEECCcCCCcccceEEEEE
Confidence 01111122 2234444445 3577899887766543322211 11222222367778887754 3566777
Q ss_pred CCCCC
Q 001358 651 TPESN 655 (1092)
Q Consensus 651 ~~~~~ 655 (1092)
..+++
T Consensus 469 ~~~~~ 473 (480)
T PHA02790 469 NRTYS 473 (480)
T ss_pred CCCCe
Confidence 66553
No 453
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.96 E-value=50 Score=41.05 Aligned_cols=174 Identities=15% Similarity=0.151 Sum_probs=102.5
Q ss_pred CCCCeeEEEEe---c----CCCEEEEEeCCeEEEEEcCCc---------------eeeEEecC---CCCCeEEEEEcCCC
Q 001358 801 SQEAVPCFALS---K----NDAYLFSASGGVISLYIVMTF---------------KTILTIMP---PSPTATSLAFNPHD 855 (1092)
Q Consensus 801 ~~~~v~~~~~s---~----dg~~l~~~sdg~i~iwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~d 855 (1092)
...+|..|+|+ . ..++|++-....+.|+...-. ..+..+.. ...+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46678888887 2 235788777778888772211 12223321 12355677888877
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001358 856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
...+|+....|...||++..+... +. .. +-+.....|.| +.|...-
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~-~~----------~~~~~~~~gsi-~~d~~e~----------------- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKR-----KS-SN----------LRLSRNISGSI-IFDPEEL----------------- 203 (765)
T ss_pred cceEEEEeccCcEEEEEecccccc-----CC-cc----------eeeccCCCccc-cCCCccc-----------------
Confidence 778888888888888887221100 00 01 11111222333 2222210
Q ss_pred CCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeee-eeccCCCcCEEEEEEecCC-CEEEEEeCCCcEEEEECCCC
Q 001358 936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 936 ~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~-~~~~~h~~~v~~l~fs~dg-~~l~t~s~Dg~i~vwd~~~~ 1010 (1092)
..-..+.|.++-..|++.....+.++|+.+..... .........|..+.-+++. .+++.- ....|...++...
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence 12447889999899999888999999998776643 2233346788888888872 222222 2356888888773
No 454
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.89 E-value=1.4 Score=47.50 Aligned_cols=122 Identities=11% Similarity=0.153 Sum_probs=81.7
Q ss_pred CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE
Q 001358 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
+++|.++.||+|.+ ++|+--.+++|.+.+....+.......+ ....+..|....|+.. .-+|.
T Consensus 66 ~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~---------------ck~k~~~IlGF~W~~s-~e~A~ 128 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQE---------------CKTKNANILGFCWTSS-TEIAF 128 (657)
T ss_pred CCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHH---------------hccCcceeEEEEEecC-eeEEE
Confidence 45999999999998 8999999999999998554433221111 2224456888999865 77777
Q ss_pred EeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC
Q 001358 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
.+..| +.+|-+...+ +.....+.|...|....|.++.+-.+|+|+-..+++.=+.+.++
T Consensus 129 i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 129 ITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 77777 7788765432 22224557888999999999988533444434444443443433
No 455
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.83 E-value=18 Score=42.25 Aligned_cols=164 Identities=11% Similarity=0.131 Sum_probs=78.8
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccce-EEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001358 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~-~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
.+..+.||.+..+|+ ...+|++++|++-... +... .-.......|..+.|..+|= .+. ..+|.+.+-+-....
T Consensus 85 ~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avl--t~~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEELIC-VQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVL--TVSGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCCceEEE-EeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEE--ecCCcEEEEcCCCcc
Confidence 888999997776655 4699999999987532 2210 01122333466666666553 233 334444443312211
Q ss_pred eeEEEec-CCcceEEEeecccCC---ccEEEEEe-cCCeEEEEEcCCCC-ceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358 477 RTYSFEG-HGAPVYSLCPHAKEN---IHFIFSIS-VDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 477 ~~~~~~~-~~~~v~~i~~~~~~~---~~~l~s~~-~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
.++++.. ........||....+ ...++-.. ..+ ..++..+... ....+......+..+++||+.++|+.-..
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~- 236 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE- 236 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec-
Confidence 2222221 111111112211111 11111111 000 0111111111 12233333457888999999999988765
Q ss_pred CCCceeEEEEeCCCCeEEEEEe
Q 001358 551 KEGESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~ 572 (1092)
.|.|.+-+....+....+.
T Consensus 237 ---~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 237 ---TGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ---CCcEEEEecchhhhhhccC
Confidence 4557777766666655555
No 456
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.79 E-value=14 Score=46.14 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=97.1
Q ss_pred eCCCeEEEEEcCCceeeEeeccccCCeEEEEE--------cCCCCEEEEEeCCCcEEEEEcCCCceeeeee-eecCCCCc
Q 001358 863 MDDSTILIYNARSSEVISKLEGHSKRVTGLVF--------SDALNILVSSGGDAQIFVWDVDGWGIQTCRS-LQTPDGVM 933 (1092)
Q Consensus 863 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--------spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~ 933 (1092)
+.|+.+.+|+.+++.....+.+-+..|..+.. -|.=++|...+.--.|.|+-+.-.+...... ....-...
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35788999999998888888877777777654 3343555555555667777655433221110 00000000
Q ss_pred CCCCCceEEEEecCCCEEEEEeCCcEEE--EEcCCc---e-ee----------------eeeccCCCcCEEEEEEecCCC
Q 001358 934 TLAPSETHIQFHKDQTRFLLVHETHLAI--YEAEEL---T-CL----------------KQWFPISSVPISQATFSCDCR 991 (1092)
Q Consensus 934 ~~~~~v~~l~~s~dg~~la~~~d~~v~l--wd~~~~---~-~~----------------~~~~~~h~~~v~~l~fs~dg~ 991 (1092)
..+..|.++....+|+.+.+|.||.|+= |....| + |. ..+...+..+|..++....-.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 1113588999899999999999985442 222221 0 10 111124577999999988888
Q ss_pred EEEEEeCCCcEEEEECCC-CceEEee
Q 001358 992 MVFTSFVDGTLSIHEASN-LEVQCRI 1016 (1092)
Q Consensus 992 ~l~t~s~Dg~i~vwd~~~-~~~~~~~ 1016 (1092)
.+.+-+..|+|++|++.. |....++
T Consensus 256 IlY~lsek~~v~~Y~i~~~G~~~~r~ 281 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGNGLGGPRF 281 (1311)
T ss_pred eeeeeccCceEEEEEccCCCccceee
Confidence 899999999999999987 5444443
No 457
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=90.70 E-value=41 Score=43.49 Aligned_cols=150 Identities=15% Similarity=0.196 Sum_probs=87.1
Q ss_pred cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.|-..++.|.-+|+|.++ =. .|+.++.||..++. |... -......++.++-.-||+..
T Consensus 360 aH~A~LTgv~~~~~ge~l-Rl--Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lY 417 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQL-RL--HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLY 417 (1774)
T ss_pred HHHHHhhccccCCCCCeE-Ee--ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceE
Confidence 466677788888888743 22 56778888876542 2210 01123455566666677776
Q ss_pred EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC------ce--eEEEec
Q 001358 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------SR--TYSFEG 483 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~------~~--~~~~~~ 483 (1092)
| =+.+ .+-|+..+.... ..-..+.+...+++|.- .+.++-....+.+|++... ++ .-.+.+
T Consensus 418 A-k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d 486 (1774)
T PF11725_consen 418 A-KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD 486 (1774)
T ss_pred e-cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccC
Confidence 6 2222 234555543111 12235777888999983 3566666667799998754 11 122333
Q ss_pred CCcceEEEeecccCCccEEEEEecCCeEEEEEcCC
Q 001358 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~ 518 (1092)
-.....++.++ ++ .|+.+..+|.+..=++..
T Consensus 487 G~a~A~~VgLs--~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 487 GKAQAQSVGLS--ND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred Cchhhhheeec--CC--eEEEEeCCCCEEeccccc
Confidence 33355566663 33 688889999888776654
No 458
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.32 E-value=27 Score=37.27 Aligned_cols=167 Identities=11% Similarity=0.071 Sum_probs=89.1
Q ss_pred cEEEEECCCCceeEEEecC------CcceEEEeecccCC----ccEEEEEecCCeEEEEEcCCCCceEEecCCC------
Q 001358 466 TIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAPG------ 529 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------ 529 (1092)
.|.+||+.+++.++++.-. ...++.+.+...+. +...++-+..+-|.|+|+.+++.........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6888999999988777432 34566777655332 2334444555689999998866544332211
Q ss_pred -------------CceEEEEEec---CCCEEEEEecCCCCceeEEEEeCCC-----Ce---------EEEEEeeccccCC
Q 001358 530 -------------LGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESE-----GA---------IKRTYQGLQLQHN 579 (1092)
Q Consensus 530 -------------~~i~~~~~s~---dg~~l~~~~~~~~~~~~i~iwd~~~-----~~---------~~~~~~~~~~~~~ 579 (1092)
..+..++.+| +|+.|+.....+ -.+|.+.+ .. .++.+ +.. ..
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~ 186 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS 186 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence 1245556554 666666554321 11221111 10 01111 221 13
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEEeC-CCCCCCCceEEEcc--CCCEEEEE
Q 001358 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTIDA-GGGLPENPRICFNK--NGTLLAVI 640 (1092)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~-~~~~~~v~~v~~s~--~~~~l~~~ 640 (1092)
....++++++|..+++--..+.|..|+..+. +....+.. ......+..+.+.+ +|.+.+..
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 5567888999988888889999999998861 12222222 22133456777777 55544443
No 459
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.30 E-value=2.6 Score=51.00 Aligned_cols=147 Identities=11% Similarity=0.036 Sum_probs=90.7
Q ss_pred ceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee-----EEEec----CCc--ceEEEeecccCCccEEEEEecCCeE
Q 001358 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-----YSFEG----HGA--PVYSLCPHAKENIHFIFSISVDGKI 511 (1092)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-----~~~~~----~~~--~v~~i~~~~~~~~~~l~s~~~dg~i 511 (1092)
+|..+..++|++...++..+.+-.|..+|+++-..- .-+.. ... ...++.|+|... ...+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 566777778877545555566567889998743211 11111 112 233455655432 245667788888
Q ss_pred EEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc-CCceEEEEEcCCC
Q 001358 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAK 590 (1092)
Q Consensus 512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~ 590 (1092)
++..+........--.-....++++|+|.|+.++.+-. .+++.-|.. +++....+.+.... ...|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeec-ccceeecccCCCcCCCcceeEEEEecce
Confidence 88766543333332233456899999999999999854 556776654 34555555544322 3679999998877
Q ss_pred CEEEE
Q 001358 591 DQILA 595 (1092)
Q Consensus 591 ~~l~~ 595 (1092)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 77766
No 460
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.28 E-value=31 Score=37.66 Aligned_cols=71 Identities=8% Similarity=-0.060 Sum_probs=35.9
Q ss_pred CccEEEEEecC-----CeEEEEEcCCCCceEEecCCC-CceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001358 498 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 498 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
++.+.+.|+.. ..+..||+.+.+=...-..+. ......+...+++..+.++.++.....+..||+.+.+-.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 44566666642 346777766543222111111 122233344567777776654322234678898876643
No 461
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.06 E-value=36 Score=38.04 Aligned_cols=198 Identities=16% Similarity=0.124 Sum_probs=104.5
Q ss_pred EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc-ceEE
Q 001358 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-PVYS 490 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~ 490 (1092)
.++..+|.|.-.|.+++..+-..... +....+..-.+..+|+ ++.++.++.+...|..+|+.+........ .+..
T Consensus 72 ~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 72 YVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred EEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 33356677777777776533111011 1112233333334776 77788899999999889999887765551 1111
Q ss_pred EeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---CceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001358 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
-.+ -.+ ..+..++.+|.+...+..++.......... ..+..-....++. ++.+... . +..+.-.|..+|..
T Consensus 148 ~~v--~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~-~-~~~~~a~~~~~G~~ 221 (370)
T COG1520 148 PPV--VGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDG-Y-DGILYALNAEDGTL 221 (370)
T ss_pred CcE--EcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCC-C-cceEEEEEccCCcE
Confidence 111 112 244444467888777777777666543322 1111111122333 3333221 1 33577778888877
Q ss_pred EEEEeeccccC-CceEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001358 568 KRTYQGLQLQH-NSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 568 ~~~~~~~~~~~-~~v~~~~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
.-......... ..+........ +..++.++.++.+...|..+++.+......
T Consensus 222 ~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 222 KWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 66643222000 01100001011 223466777888999999999999888754
No 462
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.89 E-value=38 Score=37.96 Aligned_cols=150 Identities=9% Similarity=0.005 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCce
Q 001358 889 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT 968 (1092)
Q Consensus 889 V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~ 968 (1092)
...+..++||.+++.+..-..++-||-.... ...+..... ..+.++.|.++|.+++++..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~~~~~-----~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHNRASA-----RRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEecCCCc-----cceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 4456677888777765444333334432210 012222211 2588999999999999887777544 333343
Q ss_pred -----eeeeeccC-CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCC
Q 001358 969 -----CLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1042 (1092)
Q Consensus 969 -----~~~~~~~~-h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~ 1042 (1092)
........ ....+..+.|.+|+..+++| ..|.+... .+.|+.-.+......++. .+| .+.|.+
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~-----~ly--~v~f~~-- 380 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAA-----NLY--SVKFFD-- 380 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCc-----cee--EEEEcC--
Confidence 11211111 12458899999888766655 67766654 455555433321122222 244 566654
Q ss_pred CCEEEEEeCCCcEEEE
Q 001358 1043 PTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus 1043 ~~~l~~~~~dg~v~~w 1058 (1092)
++...+.+.+|.|.-|
T Consensus 381 ~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCceEEEeCCcEEEEe
Confidence 3556666788887655
No 463
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.75 E-value=0.89 Score=31.54 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=26.8
Q ss_pred CCceEEeecCCCc--eEEEEEcCcCcEEEEecCCC
Q 001358 335 SSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSG 367 (1092)
Q Consensus 335 ~~V~~v~~spdg~--~llasg~~d~~i~iwd~~~~ 367 (1092)
+.|.+++|||+.. -||+.+-.-+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3689999997543 47888888899999999864
No 464
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.64 E-value=1.2 Score=30.87 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=26.5
Q ss_pred CcEEEEEECCC-C--CEEEEEeCCCEEEEEEccCC
Q 001358 397 VSVNRVVWSPD-G--SLLGVAYSKHIVQLYAYHGG 428 (1092)
Q Consensus 397 ~~V~~l~~spd-g--~~las~~~d~~i~iwd~~~~ 428 (1092)
+.|.++.|||+ + .+|+.+-..+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46889999984 4 58888888899999999863
No 465
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.63 E-value=36 Score=38.12 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=18.9
Q ss_pred EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
+.+||.++.+....-..+.. .....+..-+++++++|+.
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~ 352 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGE 352 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCC
Confidence 45788877654322222111 1122233345667777765
No 466
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.46 E-value=43 Score=38.05 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=48.9
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC
Q 001358 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
...+|.++.+...|.+ -+|+.|| +..||..+++.++.. ......+|.++.-+-.|+ +..|+.+| |.+.+.+.
T Consensus 163 ~d~~V~aLv~D~~g~l-WvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGRL-WVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCcE-EEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 3467888999888854 4567888 888888887655421 112335777777777777 67777665 67777555
No 467
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.27 E-value=23 Score=34.58 Aligned_cols=175 Identities=15% Similarity=0.076 Sum_probs=95.6
Q ss_pred EEEEEeCC--CcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE
Q 001358 457 SVITCGDD--KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 534 (1092)
Q Consensus 457 ~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 534 (1092)
++.+.+.- ..|++||+.+|+.+.+-.-....+..=-....+| .+..-.=.+|.-..+|.++.++.-.+...+.. .
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG-W- 134 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGEG-W- 134 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCcc-e-
Confidence 56666543 3699999999998866543211111111100112 22333446777788888887776655444322 2
Q ss_pred EEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc--cCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 001358 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1092)
....|++.|+.+ ++..+++.-|+.+-....+...... ....++-+.|- +|...+-.-.+..|...+.++|+.
T Consensus 135 -gLt~d~~~Lims----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 135 -GLTSDDKNLIMS----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred -eeecCCcceEee----CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 334566666665 3466788888877655444332220 01223333332 344444444555666777788887
Q ss_pred EEEEeCCC----------CCCCCceEEEccCCCEEEEE
Q 001358 613 LTTIDAGG----------GLPENPRICFNKNGTLLAVI 640 (1092)
Q Consensus 613 ~~~~~~~~----------~~~~v~~v~~s~~~~~l~~~ 640 (1092)
+..+...+ +....+.+++.|++..+...
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence 76665432 12235678998877444433
No 468
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.10 E-value=46 Score=37.86 Aligned_cols=272 Identities=16% Similarity=0.097 Sum_probs=134.4
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
.|..+.+.-.|. +-.|+.|| +..+|..+|+.+.... .....+|.++.-+-.| .|.+|+
T Consensus 166 ~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg-~LWVGT 223 (671)
T COG3292 166 PVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQG-RLWVGT 223 (671)
T ss_pred cceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcC-cEEEEe
Confidence 788999999997 34555555 6677877777664211 0011345555555444 456677
Q ss_pred CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCC--cceEEEe
Q 001358 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHG--APVYSLC 492 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~--~~v~~i~ 492 (1092)
.+| |.+.+.++.+.... -..-..+.|..+.=..+|. +-.|+..|..+. ....+...... +-|. ..|+++.
T Consensus 224 dqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~ 296 (671)
T COG3292 224 DQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLW 296 (671)
T ss_pred ccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCcccccccee
Confidence 777 88888776321110 0111233455444444444 444555543322 22333222222 1121 2233333
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEec--CCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001358 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1092)
. +.+| -|-+++.+|.+++-+-+-..........+..+...+.+| .+..+-.... .+.+.+-+..+|..++.
T Consensus 297 ~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns----~g~L~van~stG~~v~s 369 (671)
T COG3292 297 L--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS----IGELMVANGSTGELVRS 369 (671)
T ss_pred e--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc----cceEEEecCCCCcEEEE
Confidence 2 3333 466666676666543221111111111111111122222 1111111111 22355666677777776
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001358 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1092)
..... ...|+.+++.. +..+-.|+...-+..|+..+ +......... ..+.|..+.=.|+++ |..|+.+|.++.
T Consensus 370 v~q~R--g~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 370 VHQLR--GMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred eeecc--ccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec
Confidence 54433 35567777776 44566677665566677666 3333333222 234577777788887 778888776543
No 469
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.76 E-value=16 Score=40.49 Aligned_cols=151 Identities=9% Similarity=0.102 Sum_probs=92.4
Q ss_pred EEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccC------CccEEEEEecCCeEEEEEcCCC
Q 001358 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYDSL 519 (1092)
Q Consensus 446 ~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~------~~~~l~s~~~dg~i~vwd~~~~ 519 (1092)
.+-...+.+.+++..|+....++--|++.|+.+..+..|...| +.+.|.. +.+.|+--| +..|.-.|.+..
T Consensus 471 K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~ 547 (776)
T COG5167 471 KIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRAR 547 (776)
T ss_pred hceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeec-ccceEEeccccc
Confidence 3334444444567778888889999999999999998887664 3343321 223454444 444444565544
Q ss_pred CceEEecCCCC-----ceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEE
Q 001358 520 GARVDYDAPGL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1092)
Q Consensus 520 ~~~~~~~~~~~-----~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 594 (1092)
........... ...+.. ....-++++++..++ |++||.-.-.....+.+.. ..|..+..+.+|.+++
T Consensus 548 gNKi~v~esKdY~tKn~Fss~~-tTesGyIa~as~kGD----irLyDRig~rAKtalP~lG---~aIk~idvta~Gk~il 619 (776)
T COG5167 548 GNKIKVVESKDYKTKNKFSSGM-TTESGYIAAASRKGD----IRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKHIL 619 (776)
T ss_pred CCceeeeeehhccccccccccc-cccCceEEEecCCCc----eeeehhhcchhhhcCcccc---cceeeeEeecCCcEEE
Confidence 43222211111 122222 223457888876443 9999976666656666665 7899999999999998
Q ss_pred EEeCCCeEEEEECC
Q 001358 595 AAGDDHVIKIWDMN 608 (1092)
Q Consensus 595 ~~s~dg~i~iwd~~ 608 (1092)
+.+. ..+.+-|+.
T Consensus 620 aTCk-~yllL~d~~ 632 (776)
T COG5167 620 ATCK-NYLLLTDVP 632 (776)
T ss_pred Eeec-ceEEEEecc
Confidence 8775 345555543
No 470
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.70 E-value=18 Score=32.70 Aligned_cols=124 Identities=13% Similarity=0.083 Sum_probs=69.8
Q ss_pred EEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-----CCCEEEE
Q 001358 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGSLLGV 413 (1092)
Q Consensus 339 ~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-----dg~~las 413 (1092)
.-.|..... -|++++.-|.|.|.+.......... ++ ... .+-.-...|++++-.+ +...|+.
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~----~~-----~~i---~~LNin~~italaaG~l~~~~~~D~Lli 69 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR----QD-----SDI---SFLNINQEITALAAGRLKPDDGRDCLLI 69 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCcccccccc----cc-----Cce---eEEECCCceEEEEEEecCCCCCcCEEEE
Confidence 334555554 4777778899999987754322110 00 000 0112345777776443 3456777
Q ss_pred EeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCC--cEEEEEEeCCCcEEEEECCCCceeEEE
Q 001358 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK--QISVITCGDDKTIKVWDAVTGSRTYSF 481 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~--~l~l~s~~~d~~i~vwd~~~~~~~~~~ 481 (1092)
|+.. .+..||++....+. .+.-.+.|.++.+-.-+. . -++..+.+..|.-+|.+..+...+.
T Consensus 70 Gt~t-~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~-~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 70 GTQT-SLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPS-PLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred eccc-eEEEEEcccCchhh----hhhCccceeEEEEEecCCCCC-cEEEECceEEEEEeCCCCcEEEEEe
Confidence 7655 59999999876553 334456677777632111 1 2444444778888885555544443
No 471
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.64 E-value=36 Score=37.21 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=85.4
Q ss_pred CCCCeeEEEEec-CCCEEEEEeCCe------EEEEEcCC--c--eee-----EEecCCCC--------CeEEEEEcCCCC
Q 001358 801 SQEAVPCFALSK-NDAYLFSASGGV------ISLYIVMT--F--KTI-----LTIMPPSP--------TATSLAFNPHDN 856 (1092)
Q Consensus 801 ~~~~v~~~~~s~-dg~~l~~~sdg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~i~~l~~s~~d~ 856 (1092)
.-+..+.+.+.+ ++.+++...+|. +..+++.. + ..+ ..+....+ ..-++++.+ ++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence 345678889985 555555554455 54444432 1 111 11222221 344788866 78
Q ss_pred CEEEEEeCC------CeEEEEEcCCceeeEeec---------------cccCCeEEEEEcCCCCEEEEEeC-----CC--
Q 001358 857 NVIAIGMDD------STILIYNARSSEVISKLE---------------GHSKRVTGLVFSDALNILVSSGG-----DA-- 908 (1092)
Q Consensus 857 ~~lasg~~d------g~v~iwd~~~~~~~~~l~---------------~h~~~V~~l~~spdg~~l~s~s~-----Dg-- 908 (1092)
.++++.-.+ ..|+.++.. |+.+..+. ..+....+|+++|||+.|.++.+ |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 888876666 788888876 65544331 13456889999999997666543 22
Q ss_pred c-------EEEEEcCCCc---eeeeeeeecCC-CCcCCCCCceEEEEecCCCEEEE
Q 001358 909 Q-------IFVWDVDGWG---IQTCRSLQTPD-GVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 909 ~-------i~iwd~~~~~---~~~~~~~~~~~-~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
. ++|+.+.... ........... ........++.+.+-+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 5665554321 11112222221 00001136899999999998887
No 472
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=88.60 E-value=77 Score=39.84 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=18.5
Q ss_pred ccccEEEEEEecCCcEEEEeecCCe
Q 001358 733 KANKISRLTYNNGGQAIFALASNGV 757 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~ 757 (1092)
+-+.+.+++++|||...++-..+-.
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~r 684 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNSR 684 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCchh
Confidence 5667889999999997766555433
No 473
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.25 E-value=44 Score=36.56 Aligned_cols=164 Identities=13% Similarity=0.117 Sum_probs=90.8
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCe------EEEEEcCC--c--eee-----EeeccccC--------CeEEEEEcCCCC
Q 001358 843 SPTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EVI-----SKLEGHSK--------RVTGLVFSDALN 899 (1092)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~spdg~ 899 (1092)
-+.+..+++.++++ .+++.+.+|. +..+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 35678888987344 4555666776 66665543 1 111 11111111 344788888888
Q ss_pred EEEEEeCC------CcEEEEEcCCCceeeeeeeecCC-------CCcCCCCCceEEEEecCCCEEEEE------eCC--c
Q 001358 900 ILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV------HET--H 958 (1092)
Q Consensus 900 ~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~l~~s~dg~~la~~------~d~--~ 958 (1092)
++++.-.+ ..|..++.. +.......+...- ..........+++++|||+.|.+. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88877666 678888876 4432211111110 112233578999999999955442 222 1
Q ss_pred -------EEE--EEcCC-ceeeeee---ccC-----CCcCEEEEEEecCCCEEEEEe-----CCCcEEEEECC
Q 001358 959 -------LAI--YEAEE-LTCLKQW---FPI-----SSVPISQATFSCDCRMVFTSF-----VDGTLSIHEAS 1008 (1092)
Q Consensus 959 -------v~l--wd~~~-~~~~~~~---~~~-----h~~~v~~l~fs~dg~~l~t~s-----~Dg~i~vwd~~ 1008 (1092)
+++ ||..+ ++....+ ... ....|+.+.+-+|+++|+--= ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 45444 3222221 111 357889999999999777421 23456666554
No 474
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=87.62 E-value=65 Score=37.86 Aligned_cols=80 Identities=10% Similarity=0.165 Sum_probs=48.3
Q ss_pred CCEEEEEeCCeEEEEEcCCceeeEEecCC-CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec-c----ccC
Q 001358 814 DAYLFSASGGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-G----HSK 887 (1092)
Q Consensus 814 g~~l~~~sdg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~----h~~ 887 (1092)
+..++-.....|++.+...++........ ...|.+.+.. +.+++.+..++.+..+.+.......... . ...
T Consensus 418 ~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~---~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (504)
T PF10433_consen 418 DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIN---DPQVLVALSGGELVYFELDDNKISVSDNDETILELDN 494 (504)
T ss_dssp TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEES---SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS
T ss_pred CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEEC---CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC
Confidence 56666666777999998877777665443 3456666664 3467777778999999988766542222 1 457
Q ss_pred CeEEEEEcC
Q 001358 888 RVTGLVFSD 896 (1092)
Q Consensus 888 ~V~~l~~sp 896 (1092)
.|.|+...|
T Consensus 495 eis~l~i~p 503 (504)
T PF10433_consen 495 EISCLSIEP 503 (504)
T ss_dssp -EEEEE---
T ss_pred ceEEEEeCC
Confidence 788888765
No 475
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.62 E-value=6.6 Score=48.78 Aligned_cols=172 Identities=14% Similarity=0.184 Sum_probs=99.8
Q ss_pred cccCCCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC
Q 001358 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
.+..+|+..+..+. |...=+.+-+-|.=.+ |--+.|+.+.+|+.+++..... +.+-..
T Consensus 63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~-------------------~d~~sh 120 (1311)
T KOG1900|consen 63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAE-------------------YDGLSH 120 (1311)
T ss_pred ccccCCHHHHHHhc-Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCcccc-------------------ccchhh
Confidence 44566776665555 4434444555554332 3335689999999999765542 233334
Q ss_pred cEEEEE--------ECCCCCEEEEEeCCCEEEEEEccCCCCccce------EEecccccceeEEEeeCCCCcEEEEEEeC
Q 001358 398 SVNRVV--------WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1092)
Q Consensus 398 ~V~~l~--------~spdg~~las~~~d~~i~iwd~~~~~~~~~~------~~l~~h~~~v~~~~~s~d~~~l~l~s~~~ 463 (1092)
.|..+. |-|.=++|.+...--.|.|+-+.-.+..... .++.-..-.|.|+....+|+ ++. +|.
T Consensus 121 tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~ 197 (1311)
T KOG1900|consen 121 TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGR 197 (1311)
T ss_pred hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eec
Confidence 444443 4444566666555556777766533221111 11222245789999888888 455 555
Q ss_pred CCcEEEEEC----CCC---c-e----------------eEEEe-cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC
Q 001358 464 DKTIKVWDA----VTG---S-R----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1092)
Q Consensus 464 d~~i~vwd~----~~~---~-~----------------~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~ 518 (1092)
|| .+|.+ ..| + + +-.+. .+..+|..+.+.. ....+.+-+..|+|.+||+..
T Consensus 198 dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 198 DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 66 45543 111 1 1 11222 4567888888843 346888899999999999875
No 476
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=87.60 E-value=65 Score=37.85 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=61.6
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCc--eEEecCC-CCceEEEEEecCC-CEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001358 496 KENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAP-GLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~-~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
..++..++.+..+|.+....+..... ....-+. .....++++-.+| .+++.++.. +++.+..|....-+.+..+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~--gds~l~~~~~~~l~~~~~~ 296 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEF--GDSQLLQISLSNLEVLDSL 296 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESS--S-EEEEEEESESEEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEec--CCcEEEEEeCCCcEEEEec
Confidence 45667889999999998877665442 1222112 3344566665555 467777664 4688888886666777777
Q ss_pred eeccccCCceEEEEEcCC----CC------EEEEEe---CCCeEEEEE
Q 001358 572 QGLQLQHNSVSVVHFDTA----KD------QILAAG---DDHVIKIWD 606 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~----~~------~l~~~s---~dg~i~iwd 606 (1092)
... ++|..+++.+. .. .+++++ .+|.+++..
T Consensus 297 ~N~----~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 297 PNW----GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp --------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred cCc----CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 654 48888887532 22 566654 567787764
No 477
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.54 E-value=62 Score=37.54 Aligned_cols=193 Identities=12% Similarity=0.154 Sum_probs=91.7
Q ss_pred EEEEEE---eCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCc-
Q 001358 456 ISVITC---GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG- 531 (1092)
Q Consensus 456 l~l~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~- 531 (1092)
+++++. ...+...+.| ..|.....+......... |...++|.+++... +.+..+|+.. +....+......
T Consensus 116 l~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~~~~~ 189 (477)
T PF05935_consen 116 LYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDLPGGYY 189 (477)
T ss_dssp EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred EEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce--eeEcCCCCEEEecC--CceEEEcCCC-CEEEeeecCCccc
Confidence 355555 3445566667 556655555332222111 23355776666554 7777777753 333333333321
Q ss_pred --eEEEEEecCCCEEEEEec---------CCCCceeEEEEeCCCCeEEEEEeeccc----------------------c-
Q 001358 532 --CTRMAYSANGRRLFSCGT---------SKEGESFLVEWNESEGAIKRTYQGLQL----------------------Q- 577 (1092)
Q Consensus 532 --i~~~~~s~dg~~l~~~~~---------~~~~~~~i~iwd~~~~~~~~~~~~~~~----------------------~- 577 (1092)
-..+...|+|++|+.+.. .......|..+| .+|+.+..+..... .
T Consensus 190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 234677799999887762 111123466777 77877665432210 0
Q ss_pred -CCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceEEEEeCCCCCCCC-ceEEEcc------------------CCCE
Q 001358 578 -HNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPEN-PRICFNK------------------NGTL 636 (1092)
Q Consensus 578 -~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~v~~s~------------------~~~~ 636 (1092)
--.++++.+.+....|+..+. -..|...|..+++....+..++....- ....+.| -|++
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH 348 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQH 348 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-E
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCccccccc
Confidence 023788999895555655555 448899999999998888765432211 1111111 2566
Q ss_pred EEEEeCCC---eEEEEECCCCC
Q 001358 637 LAVIANEN---RIKILETPESN 655 (1092)
Q Consensus 637 l~~~~~dg---~i~iw~~~~~~ 655 (1092)
-+.-..+| .|.+||-...+
T Consensus 349 ~~~~~~~g~~~~l~vFDNg~~r 370 (477)
T PF05935_consen 349 TAHLIPDGPQGNLLVFDNGNGR 370 (477)
T ss_dssp EEEE-TTS---SEEEEE--TTG
T ss_pred ceEEcCCCCeEEEEEEECCCCC
Confidence 66666777 88888876553
No 478
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.49 E-value=1.9 Score=29.53 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=22.0
Q ss_pred cCCCCceEEeecCCCceEEEEEcCc--CcEEEE
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLW 362 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d--~~i~iw 362 (1092)
.....-...+|||||++++.++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445778899999999877777776 666665
No 479
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=87.15 E-value=49 Score=42.90 Aligned_cols=134 Identities=13% Similarity=0.055 Sum_probs=80.3
Q ss_pred EeCCCeEEEEEcCCce-------eeEee---------ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001358 862 GMDDSTILIYNARSSE-------VISKL---------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS 925 (1092)
Q Consensus 862 g~~dg~v~iwd~~~~~-------~~~~l---------~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 925 (1092)
|-.||.|.-||-.+.. -+..| .-..+.|..+.+++...-++-+. +..+.+=-.. .+......
T Consensus 619 ~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~~r-~~~e~G~~ 696 (1774)
T PF11725_consen 619 GLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQRR-NKVELGDA 696 (1774)
T ss_pred eeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-Cccccccccc-CCCCCCcc
Confidence 4568999999976521 11111 11346677777777655554332 2222210000 11111223
Q ss_pred eecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEE
Q 001358 926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus 926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~v 1004 (1092)
+...+ ...|+++|+-.+.++++....|.+.... ..+..+..-..+-.+.|..++......+.+ -..+|.++-
T Consensus 697 l~Gl~-----~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf~ 768 (1774)
T PF11725_consen 697 LEGLE-----DRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYA-LTSTGELFR 768 (1774)
T ss_pred ccCCC-----cCcceeEEEEcCCceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeE-ecCCCceee
Confidence 33333 1368999999999999998889999888 667665554555689999999988765444 556776553
No 480
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.08 E-value=16 Score=40.44 Aligned_cols=142 Identities=15% Similarity=0.221 Sum_probs=87.7
Q ss_pred cCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC-------CCCEEEEEeCCCeEEEEEcCC-ceeeEe
Q 001358 812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH-------DNNVIAIGMDDSTILIYNARS-SEVISK 881 (1092)
Q Consensus 812 ~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-------d~~~lasg~~dg~v~iwd~~~-~~~~~~ 881 (1092)
.|..++..-+ ...++-.|++.|+.+.....|... -+.|.|. +.+.|+ |-.+..|.-.|.+- |..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence 3444444443 266888899999999888877655 4566662 233444 55555555555442 322222
Q ss_pred eccccCCeEEEEEc----CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCC
Q 001358 882 LEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 957 (1092)
Q Consensus 882 l~~h~~~V~~l~~s----pdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~ 957 (1092)
-+ ...-++.-.|| ....++|.+|.-|.|++||--.....+ .+ + ..+..|..+..+.+|+++++....
T Consensus 554 ~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt--al---P---~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 554 VE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT--AL---P---GLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhh--cC---c---ccccceeeeEeecCCcEEEEeecc
Confidence 11 12222323333 245689999999999999965522111 11 1 122468899999999999998888
Q ss_pred cEEEEEcC
Q 001358 958 HLAIYEAE 965 (1092)
Q Consensus 958 ~v~lwd~~ 965 (1092)
.+.+.|+.
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 88888875
No 481
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.03 E-value=9.3 Score=48.20 Aligned_cols=69 Identities=10% Similarity=0.164 Sum_probs=45.5
Q ss_pred CceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 001358 938 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 938 ~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~ 1012 (1092)
.+.+..+......+.....+.+.+|+.........+...+... +.++..++++-.||.+.+||...|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE------SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC------ccCCceEEEEEecCCEEeeecCCCce
Confidence 3445555555555555556666666655444444433222212 88999999999999999999999866
No 482
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=86.90 E-value=55 Score=36.21 Aligned_cols=54 Identities=4% Similarity=-0.187 Sum_probs=26.7
Q ss_pred CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCC------cEEEEECCCC
Q 001358 957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG------TLSIHEASNL 1010 (1092)
Q Consensus 957 ~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg------~i~vwd~~~~ 1010 (1092)
+.+..||..+.+-...-.......-...+...++++.+.|+.+. .+.++++...
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~ 227 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGG 227 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCC
Confidence 45888998766533221111111111222345778888887542 2445565443
No 483
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=86.43 E-value=37 Score=39.35 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=73.0
Q ss_pred CCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEE
Q 001358 864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943 (1092)
Q Consensus 864 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1092)
..+...++|.. |..+..+.........+.+.++|.+++..+ ..++.+|+.... .....+ ..+... .=..+.
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v-~~~~~l--~~~~~~---~HHD~~ 196 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV-IWEYDL--PGGYYD---FHHDID 196 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E-EEEEE----TTEE----B-S-EE
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE-EEeeec--CCcccc---cccccE
Confidence 34455666644 455444432221111166678998887665 678888887532 221122 211100 012577
Q ss_pred EecCCCEEEEEe--------------CCcEEEEEcCCceeeeeeccC-C-------------------------CcCEEE
Q 001358 944 FHKDQTRFLLVH--------------ETHLAIYEAEELTCLKQWFPI-S-------------------------SVPISQ 983 (1092)
Q Consensus 944 ~s~dg~~la~~~--------------d~~v~lwd~~~~~~~~~~~~~-h-------------------------~~~v~~ 983 (1092)
.-|+|++|+.+. +..|..+| .+|+.+..|... | ---+.+
T Consensus 197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns 275 (477)
T PF05935_consen 197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS 275 (477)
T ss_dssp E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence 889999988754 23466666 677666554211 1 134788
Q ss_pred EEEec-CCCEEEEEeCCCcEEEEECCCCceEEeecccccc
Q 001358 984 ATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL 1022 (1092)
Q Consensus 984 l~fs~-dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 1022 (1092)
+.+.+ |+.+|+++=.-..|...|..++++...+......
T Consensus 276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w 315 (477)
T PF05935_consen 276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGW 315 (477)
T ss_dssp EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT-
T ss_pred cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCC
Confidence 89988 5555555544458888898899998888754433
No 484
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.39 E-value=3.4 Score=40.25 Aligned_cols=32 Identities=38% Similarity=0.591 Sum_probs=26.3
Q ss_pred CcEEEEEECCCC------CEEEEEeCCCEEEEEEccCC
Q 001358 397 VSVNRVVWSPDG------SLLGVAYSKHIVQLYAYHGG 428 (1092)
Q Consensus 397 ~~V~~l~~spdg------~~las~~~d~~i~iwd~~~~ 428 (1092)
..|.+++|||-| -+||+.+.++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 389999999954 47888899999999987643
No 485
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.34 E-value=0.14 Score=55.29 Aligned_cols=243 Identities=16% Similarity=0.105 Sum_probs=136.9
Q ss_pred EEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE
Q 001358 739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 818 (1092)
Q Consensus 739 ~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~ 818 (1092)
...+.+.+.-++.++.+..+..||-.... .... ........+++..++..++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~-----------------------~le~-----n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV-----------------------ILEL-----NPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce-----------------------eccc-----CCchhHhhhhhccccchhh
Confidence 34566666668888877777776632211 1111 1233445677777787776
Q ss_pred EEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcC
Q 001358 819 SAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 896 (1092)
Q Consensus 819 ~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp 896 (1092)
... .+.+.+||+.+....+--.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|...++++++.+
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 665 58899999975432211111111222278999 889999999999999999988776666666999999999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCC--CCceEEEEecCCCEEEEEeCCcEEEE--Ec--CCceee
Q 001358 897 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA--PSETHIQFHKDQTRFLLVHETHLAIY--EA--EELTCL 970 (1092)
Q Consensus 897 dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~s~dg~~la~~~d~~v~lw--d~--~~~~~~ 970 (1092)
.+ +.+.++.|..+.+-...+..... ....+...-. -....=.|..-|..+.....+.+.+. .+ ..+ +.
T Consensus 170 Ed-~vil~dcd~~L~v~~qegeta~l----tevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~-pv 243 (615)
T KOG2247|consen 170 ED-YVILCDCDNTLSVTTQEGETASL----TEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDE-PV 243 (615)
T ss_pred cc-eeeecCcHHHHHHhhhccceeee----eeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCC-cc
Confidence 85 55667777665544433311111 0001110000 00111123334444444222221111 11 111 11
Q ss_pred eeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeec
Q 001358 971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 971 ~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
...+....+.+.++.|--||.. .-+-.-|.|..-.+.++++...|.
T Consensus 244 al~fq~~~gni~cyrwylDg~i-~igf~ag~iV~iS~h~aeLgaeff 289 (615)
T KOG2247|consen 244 ALQFQEKYGNIHCYRWYLDGYI-LIGFDAGYIVSISAHNAELGAEFF 289 (615)
T ss_pred ceEeeecCCceeEEEEeccccc-cccccceeEEEEeccchHHHHHHH
Confidence 1112233567888888888854 446666777777788887765554
No 486
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.25 E-value=4.9 Score=40.71 Aligned_cols=72 Identities=10% Similarity=-0.028 Sum_probs=55.2
Q ss_pred EEEecCCCEEEE-EeCCcEEEEEcCCceeeeee------cc-------CCCcCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001358 942 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 942 l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~------~~-------~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
+.+..++.+|++ ..+|.+++||+.+++.+... +. .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 446667777776 89999999999998766442 22 2467889999999998888765 588999998
Q ss_pred CCCceEE
Q 001358 1008 SNLEVQC 1014 (1092)
Q Consensus 1008 ~~~~~~~ 1014 (1092)
+-+....
T Consensus 95 ~L~~W~~ 101 (219)
T PF07569_consen 95 DLGCWIR 101 (219)
T ss_pred ccceeEE
Confidence 8776654
No 487
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.16 E-value=2.8 Score=42.44 Aligned_cols=74 Identities=9% Similarity=0.122 Sum_probs=51.6
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCceeeee-eee-cCCCC----cCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCc
Q 001358 894 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR-SLQ-TPDGV----MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 967 (1092)
Q Consensus 894 ~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~-~~~~~----~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~ 967 (1092)
+..++++|+..+.+|.+++||+.+.+..... .+. ..... ......|..+.++.+|.-|++-++|..+.|+..=+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999987644322 111 11100 02224689999999999888877788899987633
No 488
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=85.97 E-value=15 Score=37.56 Aligned_cols=148 Identities=11% Similarity=0.043 Sum_probs=83.0
Q ss_pred EEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC---CeEEEEEeeccccCCceEEEEEcC
Q 001358 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
.+||+.+.+..........-+.+-++-+||+.+.+++. .++...+++++..+ ..........-.....-.+...-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 46888776554433233334445567899999988875 44667788888765 111111111001113344456678
Q ss_pred CCCEEEEEeCCC-eEEEEECCC-CceEEEE---e---CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeec
Q 001358 589 AKDQILAAGDDH-VIKIWDMNK-VQLLTTI---D---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1092)
Q Consensus 589 ~~~~l~~~s~dg-~i~iwd~~~-~~~~~~~---~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 660 (1092)
||+.++.|+... +..+|.... ......+ . .......-..+...|+|++++.+..+ -.|||..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence 999999987654 445555422 1111111 1 01111223467788999999888765 456688877665555
Q ss_pred cc
Q 001358 661 GV 662 (1092)
Q Consensus 661 ~~ 662 (1092)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 43
No 489
>PRK13614 lipoprotein LpqB; Provisional
Probab=85.51 E-value=47 Score=38.99 Aligned_cols=158 Identities=14% Similarity=0.118 Sum_probs=88.5
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceee-EeeccccCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCC-Cce
Q 001358 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDG-WGI 920 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--~i~iwd~~~-~~~ 920 (1092)
.+.+++.++ ++..+|....++. .+|-...+... ..+.+ ..++.-.|.++| ++-++..+. .|....-.. ++.
T Consensus 344 ~~~s~avS~-~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g--~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~ 418 (573)
T PRK13614 344 GPASPAESP-VSQTVAFLNGSRT-TLYTVSPGQPARALTSG--STLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEG 418 (573)
T ss_pred cccceeecC-CCceEEEecCCCc-EEEEecCCCcceeeecC--CCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccc
Confidence 678899999 8888888777762 33432223322 23333 346777888887 666655443 444443221 111
Q ss_pred eeee--eeecCCCCcCCCCCceEEEEecCCCEEEE--EeCCc--EEEEEc---CCceeeee--ec-cCCCcCEEEEEEec
Q 001358 921 QTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETH--LAIYEA---EELTCLKQ--WF-PISSVPISQATFSC 988 (1092)
Q Consensus 921 ~~~~--~~~~~~~~~~~~~~v~~l~~s~dg~~la~--~~d~~--v~lwd~---~~~~~~~~--~~-~~h~~~v~~l~fs~ 988 (1092)
.... .+.. . ......|..+..|+||..+|. ..++. |+|--+ ..|..... .. .++...+.++.|..
T Consensus 419 ~~~~~~~v~~-~--~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~ 495 (573)
T PRK13614 419 AQAPTVTLTA-D--WLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVG 495 (573)
T ss_pred ccccceeecc-c--ccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcC
Confidence 0000 1111 1 111124999999999999887 34665 666544 24432211 11 12246889999999
Q ss_pred CCCEEEEEeC-C--CcEEEEECCCC
Q 001358 989 DCRMVFTSFV-D--GTLSIHEASNL 1010 (1092)
Q Consensus 989 dg~~l~t~s~-D--g~i~vwd~~~~ 1010 (1092)
++.+++.+.. + ..+++..+..|
T Consensus 496 ~~sl~V~~~~~~~~~~~~~v~v~~g 520 (573)
T PRK13614 496 DSTVVVTKASATSNVVPELLSVDAG 520 (573)
T ss_pred CCEEEEEeccCCCcceEEEEEeCCC
Confidence 9987776542 2 34566666544
No 490
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=85.36 E-value=49 Score=34.26 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=46.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 001358 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
+.+..+.++ +++++.+..+.-++|.|+.+......+..-.... ..-.+.-.|++..++.-|.-+.+.|+.+..
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g--yaygv~vsGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG--YAYGVYVSGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCc--eEEEEEecCCEEEEeeccCcEEEEECCCCC
Confidence 455666665 4678888888889999998765443332211101 223344458888888866677788887653
No 491
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.20 E-value=63 Score=35.31 Aligned_cols=111 Identities=8% Similarity=-0.029 Sum_probs=55.3
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCcee-eeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe------CCcEEEEEc
Q 001358 897 ALNILVSSGGDA-----QIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH------ETHLAIYEA 964 (1092)
Q Consensus 897 dg~~l~s~s~Dg-----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~------d~~v~lwd~ 964 (1092)
++++++.|+.++ .+..+|+.+.+.. ....+...... .-...+..-++++.+.+. ...+..||.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-----~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-----FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-----ccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence 566777777653 4666777664421 11111111111 011122233566656542 135888898
Q ss_pred CCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCc----EEEEECCCCce
Q 001358 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT----LSIHEASNLEV 1012 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~----i~vwd~~~~~~ 1012 (1092)
.+.+-...-......+....+...++++.+.|+.++. +..||..+.+.
T Consensus 147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 7665332210111122233334567888888887643 56788887654
No 492
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.03 E-value=3.3 Score=44.71 Aligned_cols=159 Identities=9% Similarity=0.078 Sum_probs=97.4
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceee-EEec-CCCC----CeE-EEEEcCCCCCEEEEEeCCCeEEEE-E
Q 001358 801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI-LTIM-PPSP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N 872 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~-~~~~-~~~~----~i~-~l~~s~~d~~~lasg~~dg~v~iw-d 872 (1092)
....+..+-..|||+.+..-+..++.++++.+.... +.+. ...+ .|+ ++..-. ++.-|.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 345677888999999999988889999988754322 1221 1112 122 222233 67778889999988776 4
Q ss_pred cCCc-e----eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC
Q 001358 873 ARSS-E----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 873 ~~~~-~----~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 947 (1092)
...+ . .+..++-...++..+.--.+.+-+++-+..|++.++.....+.. ..+..- ..+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l---L~~~~~------~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL---LFERAY------QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce---ehhhhh------cCcceeeeCcc
Confidence 4332 1 12222222233443333334466777888888887765442211 111111 13667999999
Q ss_pred CCEEEEEeCCcEEEEEcCCcee
Q 001358 948 QTRFLLVHETHLAIYEAEELTC 969 (1092)
Q Consensus 948 g~~la~~~d~~v~lwd~~~~~~ 969 (1092)
+.+|++-..+.++++.+++...
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred cchheeecCCceEEEEecCCCC
Confidence 9999998889999998876543
No 493
>PRK13613 lipoprotein LpqB; Provisional
Probab=84.74 E-value=93 Score=37.02 Aligned_cols=188 Identities=10% Similarity=0.017 Sum_probs=101.5
Q ss_pred CeeEEEEecCCCEEEEEeC-C-eEEEEEcCCcee----e-EEecCCCCCeEEEEEcCCCCCEEEEEeC--CC--eEEEEE
Q 001358 804 AVPCFALSKNDAYLFSASG-G-VISLYIVMTFKT----I-LTIMPPSPTATSLAFNPHDNNVIAIGMD--DS--TILIYN 872 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sd-g-~i~iwd~~~~~~----~-~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg--~v~iwd 872 (1092)
.+.+++.|+++..+|...+ + .+.+..+..+.. . ..+. ....+.-.|.+ ++ .+-+... ++ .+++..
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~ 439 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQ 439 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcC-CC-CEEEecCCCCCceEEEEEc
Confidence 5778999999999887763 3 466655533322 1 1121 23466667777 45 3434322 22 255554
Q ss_pred cCCceee--EeeccccC-CeEEEEEcCCCCEEEEEeC---CCcEEEEEcCC---CceeeeeeeecCCCCcCCCCCceEEE
Q 001358 873 ARSSEVI--SKLEGHSK-RVTGLVFSDALNILVSSGG---DAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQ 943 (1092)
Q Consensus 873 ~~~~~~~--~~l~~h~~-~V~~l~~spdg~~l~s~s~---Dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1092)
- +|+.. .. ....+ .|+.+..|+||-++|.... .+.|.|=-+.. +.......+....+. ..+.+++
T Consensus 440 ~-~G~~~~V~~-~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~ 513 (599)
T PRK13613 440 G-DGEPVEVRT-PELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMS 513 (599)
T ss_pred C-CCcEEEeec-cccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeE
Confidence 3 44432 11 12233 7999999999988776554 35565554433 221111112221221 2488999
Q ss_pred EecCCCEEEEE--eC--CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEeCCCcE
Q 001358 944 FHKDQTRFLLV--HE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTL 1002 (1092)
Q Consensus 944 ~s~dg~~la~~--~d--~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~s~Dg~i 1002 (1092)
|..++.+++.+ .+ ..+.+.++........ ..+.-..+..++-..+.+ .|+.+..++.|
T Consensus 514 W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~-~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 514 WAGDSQLVVLGREEGGVQQARYVQVDGSTPPAS-APAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred EcCCCEEEEEeccCCCCcceEEEecCCcCcccc-cccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 99999988854 23 3344445443322211 112344566677776666 45543555554
No 494
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.23 E-value=71 Score=35.18 Aligned_cols=188 Identities=13% Similarity=0.143 Sum_probs=101.5
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeec--ccCCccE--EEEEe-cC---CeEEEEEcCCCCceE-EecC
Q 001358 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHF--IFSIS-VD---GKIKAWLYDSLGARV-DYDA 527 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~--~~~~~~~--l~s~~-~d---g~i~vwd~~~~~~~~-~~~~ 527 (1092)
+++....++-+.+||+ .|+.++.+. .+.++.+.+. ..-+++. |+.++ .+ .+|++|.++...... .+..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6777778888999995 556666664 2344444321 1112222 33333 32 469999886533222 2221
Q ss_pred -------CCCceEEEEEe--c-CCCEEEEEecCCCCceeEEEEeC---CCC----eEEEEEeeccccCCceEEEEEcCCC
Q 001358 528 -------PGLGCTRMAYS--A-NGRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK 590 (1092)
Q Consensus 528 -------~~~~i~~~~~s--~-dg~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1092)
....++.+|+- + +|.+.+.... + ++.+..|.+ ..+ +.++.|... ..+..|......
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k--~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-K--DGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDDET 219 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-T--TSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEETTT
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec-C--CceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEeccc
Confidence 11246677763 3 4554444332 1 334555443 344 456777653 478899999999
Q ss_pred CEEEEEeCCCeEEEEECCCC-----ceEEEEeCCCCCCCCceEEEc--cCC-CEEEEEe-CCCeEEEEECCCC
Q 001358 591 DQILAAGDDHVIKIWDMNKV-----QLLTTIDAGGGLPENPRICFN--KNG-TLLAVIA-NENRIKILETPES 654 (1092)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~v~~s--~~~-~~l~~~~-~dg~i~iw~~~~~ 654 (1092)
.+|+.+-++.-|.-|+.+.. ..+.......-...+-.++.- .++ .||++.+ .+++..+|+....
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999999988888887622 222222222223446666664 343 3444444 4788999998753
No 495
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=83.99 E-value=26 Score=39.78 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=60.9
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCC------CEEEEE--e-
Q 001358 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLLV--H- 955 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg------~~la~~--~- 955 (1092)
.-...+.|+|.|||++|++--..|.|++++-.++.......+...... .-......|+|+|+- .+|.++ .
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~-~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVND-AQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceecc-CCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 345678999999998888765569999998665432211111100000 012357899999884 344442 1
Q ss_pred --------CCcEEEEEcCCc--ee--eeeeccC----CCcCEEEEEEecCCCEEEEEeCC
Q 001358 956 --------ETHLAIYEAEEL--TC--LKQWFPI----SSVPISQATFSCDCRMVFTSFVD 999 (1092)
Q Consensus 956 --------d~~v~lwd~~~~--~~--~~~~~~~----h~~~v~~l~fs~dg~~l~t~s~D 999 (1092)
...|.-|.+... .. ...++.+ ....-..|+|.|||.++++.+..
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 123444544311 00 1111111 01224467899999877766544
No 496
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=83.45 E-value=72 Score=37.75 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=35.4
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001358 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la 860 (1092)
.+...+|.-....++.+..+.+.+|-.....-.....-....+.-+.|+|.....|.
T Consensus 297 k~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~ 353 (1243)
T COG5290 297 KAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLL 353 (1243)
T ss_pred hhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEE
Confidence 344556666666666667788999998765433333333456677889984443443
No 497
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.92 E-value=7.3 Score=37.90 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCC------CEEEEEeCCCcEEEEEcCC
Q 001358 887 KRVTGLVFSDAL------NILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 887 ~~V~~l~~spdg------~~l~s~s~Dg~i~iwd~~~ 917 (1092)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999954 5789999999999998775
No 498
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=82.78 E-value=38 Score=37.01 Aligned_cols=162 Identities=13% Similarity=0.131 Sum_probs=88.8
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCee-EEEEe
Q 001358 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP-CFALS 811 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~-~~~~s 811 (1092)
....+..+-..|||+.+..-+. ..+.++++........ ++.+-..|. ....|+ .+..-
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r---------kl~~dspg~-----------~~~~Vte~l~lL 277 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR---------KLVDDSPGD-----------SRHQVTEQLYLL 277 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh---------hhhhcCCCc-----------hHHHHHHHHHHH
Confidence 4456778889999998887776 5788888766543111 000100110 001111 11112
Q ss_pred cCCCEEEEEe-CCeEEEE-EcCCc-----eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecc
Q 001358 812 KNDAYLFSAS-GGVISLY-IVMTF-----KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 812 ~dg~~l~~~s-dg~i~iw-d~~~~-----~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
..|..+.+++ ||.|.-| |...+ ..++.++-...++..+.--. ..+-+++-+..|++.++.....+.+-.-.
T Consensus 278 ~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~- 355 (733)
T COG4590 278 SGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER- 355 (733)
T ss_pred hCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh-
Confidence 2343444443 6666555 44322 12233332333444444333 45667777888888888765544332222
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001358 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 918 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~ 918 (1092)
--..+.-+++||.+.+|++-. .|.|+++.+++.
T Consensus 356 ~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 356 AYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred hhcCcceeeeCcccchheeec-CCceEEEEecCC
Confidence 223566789999999999754 456999988764
No 499
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=82.49 E-value=76 Score=34.20 Aligned_cols=210 Identities=13% Similarity=0.012 Sum_probs=103.2
Q ss_pred CCCcEEEEEECCCCCEEEEEeC-CCEEEEEEccCCCC-----------ccc-eEEecccccceeEEEeeCCCCcEEEEEE
Q 001358 395 PGVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSD-----------ARQ-QLEIDAHVGNVNDLAFSAPCKQISVITC 461 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~-d~~i~iwd~~~~~~-----------~~~-~~~l~~h~~~v~~~~~s~d~~~l~l~s~ 461 (1092)
+...|+++...+.-+.|++-+. ...++.+++..-.. .+. ....-+|......++.. .++...++.+
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~-~~~~~~~l~~ 119 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVV-NGKRSLFLCV 119 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEE-cCCCcEEEEE
Confidence 5668999999998877776643 44599999843221 000 00112344444444444 3333345555
Q ss_pred eCCCcEEEEECCCC----ceeEEE---e-cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC--CCce-----EEec
Q 001358 462 GDDKTIKVWDAVTG----SRTYSF---E-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS--LGAR-----VDYD 526 (1092)
Q Consensus 462 ~~d~~i~vwd~~~~----~~~~~~---~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~-----~~~~ 526 (1092)
....+|.++.+... ...+.+ . .-..++..+..+.+.....+..|+..+-..++++.. .... ....
T Consensus 120 A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~ 199 (302)
T smart00036 120 ALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSE 199 (302)
T ss_pred EcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccccccccc
Confidence 55667777654322 111211 0 112233333333333345666676643334444432 1100 0011
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001358 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
.......++..-+++.+|++- +......|.......+ .+. .. ....++++.. .++++-+. ..|.|
T Consensus 200 ~~~~~p~~i~~l~~~e~Llc~------~~~~v~Vn~~G~~~~r~~~l~-w~---~~p~~~~~~~--pyll~~~~-~~iev 266 (302)
T smart00036 200 ETSLKPISVVQVPRDEFLLCY------DEFGVFVNLYGKRRSRNPILH-WE---FMPESFAYHS--PYLLAFHD-NGIEI 266 (302)
T ss_pred ccccCceEEEEECCCeEEEEE------CcEEEEEeCCCCccccceEEE-cC---CcccEEEEEC--CEEEEEcC-CcEEE
Confidence 111023334444556666554 2234444544212211 121 11 3455666653 67777665 45999
Q ss_pred EECCCCceEEEEeC
Q 001358 605 WDMNKVQLLTTIDA 618 (1092)
Q Consensus 605 wd~~~~~~~~~~~~ 618 (1092)
+++.++..++++..
T Consensus 267 r~l~~~~l~q~i~~ 280 (302)
T smart00036 267 RSIKTGELLQELAD 280 (302)
T ss_pred EECCCCceEEEEec
Confidence 99999999888864
No 500
>PRK13615 lipoprotein LpqB; Provisional
Probab=81.93 E-value=1.1e+02 Score=35.82 Aligned_cols=152 Identities=9% Similarity=0.014 Sum_probs=90.9
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-Cceeeee
Q 001358 846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCR 924 (1092)
Q Consensus 846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~-~~~~~~~ 924 (1092)
..+++.++ ++..+|....++.+.++... +.....+. ...++.-.|.++| ++-++..+...++..... ++..
T Consensus 336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~--- 407 (557)
T PRK13615 336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH--- 407 (557)
T ss_pred cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE---
Confidence 37889999 88888888778888887665 22222232 2346677888887 666655544455555433 2221
Q ss_pred eeecCCCCcCCCCCceEEEEecCCCEEEEEe----CCcEEEEEcCC--c--eee----eeeccCCCcCEEEEEEecCCCE
Q 001358 925 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEE--L--TCL----KQWFPISSVPISQATFSCDCRM 992 (1092)
Q Consensus 925 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~----d~~v~lwd~~~--~--~~~----~~~~~~h~~~v~~l~fs~dg~~ 992 (1092)
.+..... ..+.|..+..|+||..+|.-. .++|.|--+.. + ..+ .....+ ...+.++.|..++.+
T Consensus 408 ~v~v~~~---~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~-l~~v~sl~W~~~~~l 483 (557)
T PRK13615 408 PVAVSWT---ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLAS-PGTPLDATWVDELDV 483 (557)
T ss_pred Eeecccc---CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccC-cCcceeeEEcCCCEE
Confidence 1111111 224799999999999998832 25676644432 2 122 111112 348899999999987
Q ss_pred EEEEe---CCCcEEEEECCC
Q 001358 993 VFTSF---VDGTLSIHEASN 1009 (1092)
Q Consensus 993 l~t~s---~Dg~i~vwd~~~ 1009 (1092)
++.+. .+..+++-.+..
T Consensus 484 aVl~~~~~~~~~v~~v~v~g 503 (557)
T PRK13615 484 ATLTLAPDGERQVELHQVGG 503 (557)
T ss_pred EEEeccCCCCceEEEEECCC
Confidence 66652 234566666653
Done!