Query 001358
Match_columns 1092
No_of_seqs 899 out of 5044
Neff 10.6
Searched_HMMs 29240
Date Tue Mar 26 00:03:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001358.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001358hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 7E-69 2.4E-73 648.5 77.6 567 327-1006 9-577 (577)
2 2ymu_A WD-40 repeat protein; u 100.0 8.2E-67 2.8E-71 630.4 79.5 565 391-1059 11-577 (577)
3 1nr0_A Actin interacting prote 100.0 8.1E-67 2.8E-71 630.4 74.9 576 332-1008 16-610 (611)
4 3sfz_A APAF-1, apoptotic pepti 100.0 7.1E-65 2.4E-69 670.0 64.7 619 326-1062 607-1249(1249)
5 1nr0_A Actin interacting prote 100.0 1.5E-63 5.1E-68 601.9 70.5 572 394-1061 16-610 (611)
6 1pgu_A Actin interacting prote 100.0 1.1E-60 3.9E-65 582.0 68.9 559 331-1010 15-615 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-58 7.9E-63 608.0 70.0 587 392-1065 611-1210(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 2.2E-57 7.4E-62 566.7 68.8 593 328-1018 11-792 (902)
9 1pgu_A Actin interacting prote 100.0 4.3E-57 1.5E-61 550.4 64.8 556 392-1061 14-613 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 4.4E-56 1.5E-60 554.9 58.7 597 392-1066 13-787 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 9.7E-48 3.3E-52 484.2 60.6 559 325-1010 4-602 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 3.2E-46 1.1E-50 470.3 59.2 480 392-965 9-503 (814)
13 1vyh_C Platelet-activating fac 100.0 1.3E-45 4.5E-50 421.9 40.8 288 328-651 102-409 (410)
14 1got_B GT-beta; complex (GTP-b 100.0 8.4E-40 2.9E-44 364.0 45.1 296 323-650 44-340 (340)
15 2pbi_B Guanine nucleotide-bind 100.0 1.2E-39 4.1E-44 364.4 44.9 298 324-650 54-354 (354)
16 3ow8_A WD repeat-containing pr 100.0 5.4E-40 1.8E-44 361.4 41.2 294 325-652 23-320 (321)
17 2ynn_A Coatomer subunit beta'; 100.0 3.5E-39 1.2E-43 352.7 40.0 293 325-653 4-302 (304)
18 3frx_A Guanine nucleotide-bind 100.0 7.3E-39 2.5E-43 352.7 41.0 301 325-654 8-318 (319)
19 3iz6_a 40S ribosomal protein R 100.0 1.9E-39 6.5E-44 367.1 35.5 306 324-655 56-377 (380)
20 1vyh_C Platelet-activating fac 100.0 1.8E-38 6.2E-43 362.7 39.2 286 392-715 104-409 (410)
21 1got_B GT-beta; complex (GTP-b 100.0 8.3E-38 2.8E-42 347.9 43.0 286 392-714 51-340 (340)
22 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.6E-38 1.6E-42 350.6 40.3 306 325-658 6-340 (345)
23 4g56_B MGC81050 protein; prote 100.0 4.2E-39 1.4E-43 360.1 31.7 320 701-1065 19-346 (357)
24 3ow8_A WD repeat-containing pr 100.0 7.1E-38 2.4E-42 344.5 38.9 288 392-715 28-319 (321)
25 4ery_A WD repeat-containing pr 100.0 3.8E-37 1.3E-41 338.8 44.2 295 325-652 14-311 (312)
26 4g56_B MGC81050 protein; prote 100.0 3.4E-38 1.2E-42 352.8 35.1 295 330-654 38-344 (357)
27 4gqb_B Methylosome protein 50; 100.0 1.3E-37 4.5E-42 344.6 38.4 299 331-654 27-332 (344)
28 4gqb_B Methylosome protein 50; 100.0 7.6E-38 2.6E-42 346.6 34.0 296 733-1063 29-332 (344)
29 1r5m_A SIR4-interacting protei 100.0 4E-37 1.4E-41 355.3 39.3 340 332-716 43-424 (425)
30 2pbi_B Guanine nucleotide-bind 100.0 1.3E-36 4.5E-41 339.7 42.2 287 392-714 60-354 (354)
31 2hes_X YDR267CP; beta-propelle 100.0 1E-36 3.4E-41 337.4 40.2 296 325-653 5-328 (330)
32 2xzm_R RACK1; ribosome, transl 100.0 9.9E-37 3.4E-41 339.8 40.5 302 324-654 11-341 (343)
33 1r5m_A SIR4-interacting protei 100.0 1.1E-36 3.6E-41 351.8 42.0 327 394-917 43-425 (425)
34 1erj_A Transcriptional repress 100.0 2E-36 6.9E-41 344.0 42.3 303 332-653 62-389 (393)
35 2ynn_A Coatomer subunit beta'; 100.0 1.8E-36 6.2E-41 331.2 40.3 268 392-674 9-280 (304)
36 1k32_A Tricorn protease; prote 100.0 1.5E-35 5E-40 380.2 55.3 523 333-1011 13-639 (1045)
37 1gxr_A ESG1, transducin-like e 100.0 5.1E-36 1.8E-40 334.0 42.0 324 333-763 8-335 (337)
38 3iz6_a 40S ribosomal protein R 100.0 2.9E-37 1E-41 349.1 32.2 290 392-716 62-374 (380)
39 4aow_A Guanine nucleotide-bind 100.0 6.1E-36 2.1E-40 333.9 42.3 303 325-655 29-339 (340)
40 3frx_A Guanine nucleotide-bind 100.0 1.6E-35 5.3E-40 326.1 44.2 297 391-765 12-317 (319)
41 2pm9_A Protein WEB1, protein t 100.0 2.6E-37 8.8E-42 355.9 31.1 353 335-717 13-414 (416)
42 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.2E-36 1.4E-40 334.7 39.7 301 732-1065 13-338 (345)
43 4ery_A WD repeat-containing pr 100.0 2.4E-35 8.1E-40 324.4 42.5 291 391-716 18-311 (312)
44 2hes_X YDR267CP; beta-propelle 100.0 5.5E-35 1.9E-39 323.4 43.6 306 564-1009 3-328 (330)
45 1erj_A Transcriptional repress 100.0 3.9E-35 1.3E-39 333.4 40.8 290 394-717 62-389 (393)
46 1k32_A Tricorn protease; prote 100.0 6.9E-34 2.4E-38 364.7 57.2 529 395-1064 13-639 (1045)
47 3vl1_A 26S proteasome regulato 100.0 1.2E-35 4.1E-40 342.4 36.4 346 398-917 58-419 (420)
48 3gre_A Serine/threonine-protei 100.0 7.1E-36 2.4E-40 346.0 34.6 382 341-914 34-437 (437)
49 1gxr_A ESG1, transducin-like e 100.0 1.6E-34 5.5E-39 321.9 42.4 322 439-916 7-336 (337)
50 3vl1_A 26S proteasome regulato 100.0 1.2E-35 4E-40 342.4 34.1 350 335-764 57-418 (420)
51 3dm0_A Maltose-binding peripla 100.0 5.7E-35 1.9E-39 358.8 40.6 299 326-652 374-692 (694)
52 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.3E-34 1.8E-38 330.8 46.2 328 326-765 110-442 (445)
53 2xzm_R RACK1; ribosome, transl 100.0 3.6E-34 1.2E-38 319.1 42.8 289 390-717 15-340 (343)
54 2pm9_A Protein WEB1, protein t 100.0 3.3E-36 1.1E-40 346.6 26.6 337 579-1010 13-415 (416)
55 3v7d_B Cell division control p 100.0 7.2E-34 2.5E-38 332.0 45.8 305 324-673 111-442 (464)
56 3ei3_B DNA damage-binding prot 100.0 1.5E-34 5E-39 328.5 38.5 298 324-653 63-382 (383)
57 1sq9_A Antiviral protein SKI8; 100.0 2.2E-34 7.5E-39 329.0 38.2 299 325-654 7-396 (397)
58 2j04_B YDR362CP, TAU91; beta p 100.0 5E-36 1.7E-40 348.5 24.7 341 326-716 126-516 (524)
59 3zwl_B Eukaryotic translation 100.0 1.4E-33 4.9E-38 318.6 42.8 292 326-655 24-348 (369)
60 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-33 4.3E-38 311.0 40.2 293 324-658 8-301 (313)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.9E-33 1.7E-37 322.7 45.8 319 392-875 114-442 (445)
62 3v7d_B Cell division control p 100.0 4.2E-33 1.4E-37 325.6 44.9 319 392-872 117-460 (464)
63 2j04_B YDR362CP, TAU91; beta p 100.0 4.8E-35 1.6E-39 340.3 27.5 350 395-875 132-517 (524)
64 3i2n_A WD repeat-containing pr 100.0 4E-34 1.4E-38 321.6 34.2 300 323-655 7-355 (357)
65 4aow_A Guanine nucleotide-bind 100.0 9.9E-33 3.4E-37 307.9 43.1 299 392-766 34-338 (340)
66 3gre_A Serine/threonine-protei 100.0 8.5E-34 2.9E-38 328.6 35.6 274 322-656 50-362 (437)
67 3k26_A Polycomb protein EED; W 100.0 5.6E-34 1.9E-38 321.6 32.6 295 328-652 12-365 (366)
68 4h5i_A Guanine nucleotide-exch 100.0 3.8E-33 1.3E-37 312.7 37.8 203 801-1010 132-344 (365)
69 4e54_B DNA damage-binding prot 100.0 3E-34 1E-38 331.2 29.5 303 326-656 111-433 (435)
70 1k8k_C P40, ARP2/3 complex 41 100.0 4.3E-33 1.5E-37 315.2 36.1 291 330-654 4-362 (372)
71 4a11_B DNA excision repair pro 100.0 2.3E-33 7.8E-38 321.9 33.9 348 555-1061 23-404 (408)
72 4e54_B DNA damage-binding prot 100.0 1.7E-33 5.9E-38 324.8 32.4 303 568-1013 112-434 (435)
73 3zwl_B Eukaryotic translation 100.0 3.1E-32 1.1E-36 307.6 42.1 289 390-718 26-347 (369)
74 3ei3_B DNA damage-binding prot 100.0 6.9E-33 2.4E-37 314.7 36.5 307 559-1009 57-382 (383)
75 4h5i_A Guanine nucleotide-exch 100.0 3.4E-33 1.2E-37 313.0 32.6 298 336-654 16-344 (365)
76 4aez_A CDC20, WD repeat-contai 100.0 1.8E-32 6.2E-37 312.8 38.4 299 328-659 85-386 (401)
77 2pm7_B Protein transport prote 100.0 1.4E-32 4.8E-37 299.2 35.4 252 327-608 2-284 (297)
78 3dwl_C Actin-related protein 2 100.0 3.8E-34 1.3E-38 324.5 23.9 289 330-651 7-377 (377)
79 4gga_A P55CDC, cell division c 100.0 9.5E-32 3.2E-36 308.8 44.1 289 336-661 107-403 (420)
80 2j04_A TAU60, YPL007P, hypothe 100.0 4.9E-33 1.7E-37 311.8 30.6 317 331-754 12-350 (588)
81 3dm0_A Maltose-binding peripla 100.0 9.9E-32 3.4E-36 330.0 44.3 212 435-655 376-594 (694)
82 1sq9_A Antiviral protein SKI8; 100.0 3E-32 1E-36 311.3 37.0 296 478-918 9-396 (397)
83 4a11_B DNA excision repair pro 100.0 7.9E-32 2.7E-36 309.1 38.5 347 325-716 34-404 (408)
84 2pm7_B Protein transport prote 100.0 4.1E-32 1.4E-36 295.5 34.2 252 392-653 5-285 (297)
85 2j04_A TAU60, YPL007P, hypothe 100.0 9.9E-34 3.4E-38 317.4 20.6 330 528-997 14-349 (588)
86 4ggc_A P55CDC, cell division c 100.0 1E-30 3.5E-35 288.5 43.0 282 337-654 28-316 (318)
87 1k8k_C P40, ARP2/3 complex 41 100.0 6.4E-32 2.2E-36 305.5 34.2 290 392-717 4-361 (372)
88 3dwl_C Actin-related protein 2 100.0 2.3E-32 7.8E-37 309.8 27.4 245 733-1008 10-280 (377)
89 3bg1_A Protein SEC13 homolog; 100.0 3.2E-32 1.1E-36 299.1 27.3 253 328-608 7-292 (316)
90 3dw8_B Serine/threonine-protei 100.0 1.3E-31 4.4E-36 311.4 33.9 301 332-652 26-445 (447)
91 3k26_A Polycomb protein EED; W 100.0 1.3E-31 4.5E-36 302.2 31.9 294 390-716 12-365 (366)
92 3i2n_A WD repeat-containing pr 100.0 2.9E-31 1E-35 298.2 33.6 293 390-716 12-352 (357)
93 3odt_A Protein DOA1; ubiquitin 100.0 1.4E-30 4.9E-35 286.5 38.3 281 391-719 13-298 (313)
94 1yfq_A Cell cycle arrest prote 100.0 3.3E-31 1.1E-35 295.7 32.2 287 328-650 5-321 (342)
95 3mmy_A MRNA export factor; mRN 100.0 7.1E-31 2.4E-35 296.3 34.9 294 322-651 27-344 (368)
96 1p22_A F-BOX/WD-repeat protein 100.0 9E-31 3.1E-35 302.4 36.4 280 328-657 127-418 (435)
97 4gga_A P55CDC, cell division c 100.0 1.1E-30 3.9E-35 299.8 37.0 281 398-719 107-397 (420)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-30 4E-35 298.2 32.1 298 335-655 35-344 (402)
99 3bg1_A Protein SEC13 homolog; 100.0 2.6E-31 9E-36 291.8 25.5 251 391-653 8-293 (316)
100 3f3f_A Nucleoporin SEH1; struc 100.0 7.2E-30 2.4E-34 285.7 34.7 264 328-616 5-344 (351)
101 4aez_A CDC20, WD repeat-contai 100.0 4.5E-30 1.5E-34 293.0 33.6 285 392-718 87-381 (401)
102 3dw8_B Serine/threonine-protei 100.0 4.7E-30 1.6E-34 298.2 34.0 253 395-657 27-377 (447)
103 4ggc_A P55CDC, cell division c 100.0 1.8E-29 6.2E-34 278.4 36.9 277 399-716 28-314 (318)
104 3jrp_A Fusion protein of prote 100.0 7.7E-30 2.6E-34 289.2 33.0 255 392-656 7-290 (379)
105 3jrp_A Fusion protein of prote 100.0 6.7E-30 2.3E-34 289.7 32.2 263 326-613 3-291 (379)
106 1p22_A F-BOX/WD-repeat protein 100.0 1.8E-29 6.1E-34 291.5 35.9 274 393-718 130-415 (435)
107 3mmy_A MRNA export factor; mRN 100.0 1.5E-29 5E-34 285.6 33.5 290 392-716 35-345 (368)
108 3f3f_A Nucleoporin SEH1; struc 100.0 2.4E-29 8.4E-34 281.3 34.0 259 391-660 6-344 (351)
109 1yfq_A Cell cycle arrest prote 100.0 2.2E-29 7.4E-34 281.0 31.3 285 392-715 7-322 (342)
110 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2E-28 6.9E-33 283.9 36.6 305 336-653 6-391 (450)
111 1l0q_A Surface layer protein; 100.0 1.5E-27 5E-32 271.7 41.1 349 348-753 3-366 (391)
112 3vu4_A KMHSV2; beta-propeller 100.0 1E-28 3.6E-33 275.8 30.8 282 326-653 11-336 (355)
113 1l0q_A Surface layer protein; 100.0 8.3E-27 2.8E-31 265.5 43.5 328 457-953 4-364 (391)
114 2aq5_A Coronin-1A; WD40 repeat 100.0 2.3E-28 7.9E-33 279.1 30.4 285 397-716 35-341 (402)
115 3jro_A Fusion protein of prote 100.0 3.3E-29 1.1E-33 308.8 24.7 260 327-611 2-287 (753)
116 3bws_A Protein LP49; two-domai 100.0 2.1E-26 7.2E-31 266.1 44.4 355 395-917 26-432 (433)
117 2w18_A PALB2, fancn, partner a 100.0 2.7E-27 9.2E-32 248.9 33.1 270 636-1007 56-355 (356)
118 2xyi_A Probable histone-bindin 100.0 8.9E-28 3E-32 276.4 32.0 256 327-610 121-411 (430)
119 3bws_A Protein LP49; two-domai 100.0 9.8E-27 3.3E-31 268.9 40.7 300 397-764 123-431 (433)
120 3jro_A Fusion protein of prote 100.0 1.2E-28 4.1E-33 303.8 26.1 255 391-655 4-287 (753)
121 3vu4_A KMHSV2; beta-propeller 100.0 3.3E-27 1.1E-31 263.6 34.5 299 392-719 15-338 (355)
122 3lrv_A PRE-mRNA-splicing facto 100.0 2.7E-27 9.3E-32 263.6 31.3 278 448-917 43-333 (343)
123 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.4E-27 2.2E-31 271.3 34.3 265 397-674 5-364 (450)
124 2xyi_A Probable histone-bindin 100.0 9.8E-27 3.4E-31 267.6 34.8 256 388-654 120-411 (430)
125 3lrv_A PRE-mRNA-splicing facto 100.0 7E-28 2.4E-32 268.3 24.4 271 340-652 42-332 (343)
126 2w18_A PALB2, fancn, partner a 100.0 2.1E-26 7.1E-31 242.1 33.4 285 337-651 42-355 (356)
127 1nir_A Nitrite reductase; hemo 100.0 9.7E-26 3.3E-30 264.6 41.6 345 341-885 144-524 (543)
128 1nir_A Nitrite reductase; hemo 100.0 4.6E-26 1.6E-30 267.3 38.5 343 536-974 144-522 (543)
129 4gq1_A NUP37; propeller, trans 100.0 3.5E-27 1.2E-31 267.5 25.5 295 343-651 27-387 (393)
130 4gq1_A NUP37; propeller, trans 99.9 6.6E-27 2.3E-31 265.2 22.7 252 328-607 83-387 (393)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.1E-25 1.1E-29 252.7 31.4 307 334-677 62-410 (415)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 9.1E-24 3.1E-28 240.6 32.6 307 440-899 61-410 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.9 1.8E-23 6.3E-28 259.3 37.4 303 334-652 36-412 (741)
134 2ecf_A Dipeptidyl peptidase IV 99.9 1.4E-22 4.6E-27 251.5 36.2 330 441-918 36-460 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 2.1E-23 7.3E-28 258.1 28.4 309 336-675 18-420 (723)
136 1xfd_A DIP, dipeptidyl aminope 99.9 9.2E-23 3.1E-27 252.4 31.2 385 531-1016 18-450 (723)
137 3u4y_A Uncharacterized protein 99.9 1.8E-21 6.2E-26 215.5 37.3 281 340-654 3-305 (331)
138 2z3z_A Dipeptidyl aminopeptida 99.9 4.5E-21 1.5E-25 236.3 38.0 238 399-652 28-341 (706)
139 3vgz_A Uncharacterized protein 99.9 5.9E-21 2E-25 213.6 35.3 274 335-644 41-335 (353)
140 2z3z_A Dipeptidyl aminopeptida 99.9 2.2E-21 7.5E-26 239.1 33.7 243 804-1064 122-437 (706)
141 1ri6_A Putative isomerase YBHE 99.9 2.2E-20 7.6E-25 207.9 36.7 277 346-652 4-307 (343)
142 1ri6_A Putative isomerase YBHE 99.9 2.6E-20 8.8E-25 207.4 36.3 205 804-1012 85-313 (343)
143 1pby_B Quinohemoprotein amine 99.9 4.1E-20 1.4E-24 205.1 33.1 278 591-1018 2-319 (337)
144 1pby_B Quinohemoprotein amine 99.9 2.9E-20 9.8E-25 206.4 31.7 280 349-662 3-319 (337)
145 3u4y_A Uncharacterized protein 99.9 1.1E-19 3.7E-24 201.2 35.5 284 741-1064 4-306 (331)
146 2ojh_A Uncharacterized protein 99.9 8.9E-21 3.1E-25 206.0 25.6 257 352-644 17-293 (297)
147 3vgz_A Uncharacterized protein 99.9 2.3E-19 7.8E-24 200.6 37.0 249 396-659 40-309 (353)
148 1z68_A Fibroblast activation p 99.9 1.4E-20 4.8E-25 232.3 26.5 378 534-1017 20-451 (719)
149 3o4h_A Acylamino-acid-releasin 99.8 5.8E-20 2E-24 220.4 25.8 272 334-652 21-314 (582)
150 2ojh_A Uncharacterized protein 99.8 1.2E-19 4.2E-24 196.9 26.1 245 324-600 31-293 (297)
151 3hfq_A Uncharacterized protein 99.8 1.8E-18 6E-23 192.8 34.3 249 801-1066 38-321 (347)
152 1z68_A Fibroblast activation p 99.8 4.7E-20 1.6E-24 227.6 23.7 279 338-653 19-391 (719)
153 3hfq_A Uncharacterized protein 99.8 9.6E-19 3.3E-23 194.9 31.9 277 707-1013 15-323 (347)
154 3pe7_A Oligogalacturonate lyas 99.8 6.1E-19 2.1E-23 200.1 29.9 309 318-652 14-381 (388)
155 4a5s_A Dipeptidyl peptidase 4 99.8 6.7E-19 2.3E-23 216.9 31.8 279 335-655 17-355 (740)
156 3scy_A Hypothetical bacterial 99.8 1.2E-17 4.1E-22 187.1 37.8 300 342-672 9-359 (361)
157 3scy_A Hypothetical bacterial 99.8 1.4E-17 4.7E-22 186.6 38.0 312 539-987 11-360 (361)
158 2oit_A Nucleoporin 214KDA; NH2 99.8 2.5E-19 8.7E-24 204.3 23.1 272 802-1087 36-358 (434)
159 1jmx_B Amine dehydrogenase; ox 99.8 3.7E-18 1.3E-22 190.4 32.0 283 338-661 3-333 (349)
160 4a5s_A Dipeptidyl peptidase 4 99.8 7.2E-18 2.5E-22 207.7 36.6 379 532-1016 19-456 (740)
161 2oit_A Nucleoporin 214KDA; NH2 99.8 1.4E-18 4.7E-23 198.2 27.1 221 334-565 36-279 (434)
162 3o4h_A Acylamino-acid-releasin 99.8 1.2E-18 4.1E-23 209.0 27.6 236 396-651 21-274 (582)
163 3pe7_A Oligogalacturonate lyas 99.8 4.6E-18 1.6E-22 192.8 28.5 256 392-655 26-331 (388)
164 1jmx_B Amine dehydrogenase; ox 99.8 2E-17 6.9E-22 184.4 31.6 297 496-885 8-335 (349)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.8E-17 1.3E-21 183.0 30.9 249 803-1063 40-342 (365)
166 2oiz_A Aromatic amine dehydrog 99.8 1.6E-16 5.4E-21 176.7 33.2 296 344-675 13-358 (361)
167 3c5m_A Oligogalacturonate lyas 99.8 4.4E-17 1.5E-21 185.2 28.3 299 323-654 19-385 (396)
168 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.3E-16 4.5E-21 178.6 30.7 250 395-654 38-342 (365)
169 2oiz_A Aromatic amine dehydrog 99.8 4.7E-16 1.6E-20 172.9 33.9 313 498-899 14-360 (361)
170 1qks_A Cytochrome CD1 nitrite 99.7 1.9E-14 6.4E-19 167.8 39.5 329 554-974 176-546 (567)
171 1qks_A Cytochrome CD1 nitrite 99.7 8.7E-14 3E-18 162.1 44.4 246 344-653 165-421 (567)
172 3azo_A Aminopeptidase; POP fam 99.7 1.1E-15 3.7E-20 186.6 29.8 295 328-658 17-374 (662)
173 2gop_A Trilobed protease; beta 99.7 2.5E-15 8.7E-20 167.1 29.4 262 336-652 16-330 (347)
174 3c5m_A Oligogalacturonate lyas 99.7 7.5E-16 2.6E-20 175.0 23.2 244 399-656 38-332 (396)
175 1q7f_A NHL, brain tumor CG1071 99.7 2.7E-14 9.3E-19 153.7 32.0 242 801-1064 28-282 (286)
176 3fvz_A Peptidyl-glycine alpha- 99.7 1.6E-14 5.3E-19 158.8 30.5 248 335-609 24-322 (329)
177 4a2l_A BT_4663, two-component 99.7 2.7E-10 9.1E-15 141.4 71.5 587 335-1061 43-658 (795)
178 3fvz_A Peptidyl-glycine alpha- 99.7 1.4E-14 4.7E-19 159.3 29.1 248 802-1062 23-322 (329)
179 3azo_A Aminopeptidase; POP fam 99.7 1.4E-14 4.7E-19 176.8 30.7 249 392-650 19-320 (662)
180 4a2l_A BT_4663, two-component 99.7 4.2E-10 1.4E-14 139.6 69.3 535 335-1008 88-658 (795)
181 1q7f_A NHL, brain tumor CG1071 99.7 1.7E-13 5.8E-18 147.5 33.8 248 331-610 26-281 (286)
182 2dg1_A DRP35, lactonase; beta 99.6 1.1E-13 3.8E-18 152.8 30.6 274 335-644 6-301 (333)
183 2xdw_A Prolyl endopeptidase; a 99.6 1.4E-13 4.7E-18 168.8 32.2 250 394-655 122-416 (710)
184 3e5z_A Putative gluconolactona 99.6 1.9E-13 6.4E-18 148.0 29.0 249 325-612 18-289 (296)
185 3v9f_A Two-component system se 99.6 3.9E-09 1.3E-13 130.6 70.1 588 335-1061 19-655 (781)
186 2xdw_A Prolyl endopeptidase; a 99.6 1.4E-13 4.7E-18 168.7 29.1 250 332-611 122-416 (710)
187 2gop_A Trilobed protease; beta 99.6 3.9E-13 1.3E-17 149.4 30.2 285 580-1011 16-332 (347)
188 3no2_A Uncharacterized protein 99.6 1.1E-12 3.6E-17 139.2 30.0 245 349-629 7-272 (276)
189 3dsm_A Uncharacterized protein 99.6 3.6E-13 1.2E-17 147.6 27.2 278 355-661 15-309 (328)
190 2bkl_A Prolyl endopeptidase; m 99.6 2E-13 6.9E-18 166.7 27.2 248 394-655 118-399 (695)
191 2dg1_A DRP35, lactonase; beta 99.6 3.2E-12 1.1E-16 141.0 34.4 246 324-600 34-301 (333)
192 2z2n_A Virginiamycin B lyase; 99.6 1.6E-11 5.3E-16 133.0 38.9 285 330-654 10-296 (299)
193 3sjl_D Methylamine dehydrogena 99.6 4.3E-12 1.5E-16 137.8 33.0 204 805-1017 139-371 (386)
194 3sjl_D Methylamine dehydrogena 99.6 6.2E-13 2.1E-17 144.4 26.4 288 339-663 37-373 (386)
195 2mad_H Methylamine dehydrogena 99.6 1.4E-11 4.9E-16 136.5 38.1 203 806-1016 128-357 (373)
196 2mad_H Methylamine dehydrogena 99.6 1.4E-11 4.6E-16 136.7 37.8 281 341-659 27-356 (373)
197 3e5z_A Putative gluconolactona 99.6 1.2E-12 4.1E-17 141.6 28.3 238 392-654 23-287 (296)
198 3dsm_A Uncharacterized protein 99.5 1.7E-12 5.8E-17 142.2 28.6 272 706-1017 15-309 (328)
199 3v9f_A Two-component system se 99.5 1.2E-08 4E-13 126.3 65.4 536 335-1008 66-655 (781)
200 2bkl_A Prolyl endopeptidase; m 99.5 3.4E-13 1.2E-17 164.6 23.4 250 332-613 118-401 (695)
201 3no2_A Uncharacterized protein 99.5 2.4E-12 8.2E-17 136.4 26.8 247 813-1075 4-265 (276)
202 2z2n_A Virginiamycin B lyase; 99.5 9.6E-11 3.3E-15 126.7 39.2 241 392-651 10-253 (299)
203 1rwi_B Serine/threonine-protei 99.5 2.6E-12 8.7E-17 136.9 25.2 240 336-611 25-266 (270)
204 1yr2_A Prolyl oligopeptidase; 99.5 1.7E-12 6E-17 159.5 26.7 247 394-655 160-443 (741)
205 2qc5_A Streptogramin B lactona 99.5 1.6E-10 5.6E-15 124.9 37.9 280 332-651 17-298 (300)
206 1rwi_B Serine/threonine-protei 99.5 6.7E-12 2.3E-16 133.6 25.7 240 398-655 25-266 (270)
207 3c75_H MADH, methylamine dehyd 99.5 2.2E-11 7.7E-16 135.0 30.2 205 806-1016 180-409 (426)
208 3c75_H MADH, methylamine dehyd 99.5 1.1E-11 3.7E-16 137.5 26.3 281 344-660 82-409 (426)
209 1yr2_A Prolyl oligopeptidase; 99.4 7.9E-12 2.7E-16 153.7 25.5 249 332-612 160-444 (741)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.1E-10 3.7E-15 127.3 29.0 250 331-609 14-299 (314)
211 2qc5_A Streptogramin B lactona 99.4 1.6E-09 5.5E-14 117.0 37.2 243 392-652 15-259 (300)
212 3hrp_A Uncharacterized protein 99.4 3.9E-10 1.3E-14 126.9 31.4 242 335-607 131-408 (409)
213 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 2E-10 6.9E-15 125.2 28.0 245 736-1010 19-300 (314)
214 3iuj_A Prolyl endopeptidase; h 99.3 2.3E-10 7.9E-15 139.1 29.1 252 332-613 126-409 (693)
215 1xip_A Nucleoporin NUP159; bet 99.3 3.4E-10 1.2E-14 123.6 27.3 256 804-1085 39-330 (388)
216 3g4e_A Regucalcin; six bladed 99.3 9E-10 3.1E-14 118.6 29.1 228 736-998 14-261 (297)
217 3g4e_A Regucalcin; six bladed 99.3 9.5E-10 3.2E-14 118.5 28.9 233 331-598 9-261 (297)
218 4a0p_A LRP6, LRP-6, low-densit 99.3 8E-06 2.7E-10 96.4 64.6 532 410-1016 8-556 (628)
219 2qe8_A Uncharacterized protein 99.3 6.2E-11 2.1E-15 130.7 19.4 273 335-646 17-314 (343)
220 3dr2_A Exported gluconolactona 99.3 6.3E-10 2.2E-14 120.4 26.1 239 324-601 34-299 (305)
221 1mda_H Methylamine dehydrogena 99.3 2.1E-10 7.2E-15 125.2 21.3 272 348-663 33-356 (368)
222 3iuj_A Prolyl endopeptidase; h 99.3 3.7E-10 1.3E-14 137.3 25.7 245 394-655 126-407 (693)
223 1mda_H Methylamine dehydrogena 99.2 3.1E-10 1.1E-14 123.8 21.3 196 806-1017 127-354 (368)
224 3hrp_A Uncharacterized protein 99.2 3.9E-09 1.3E-13 118.7 31.0 241 397-651 131-408 (409)
225 2ghs_A AGR_C_1268P; regucalcin 99.2 5.8E-09 2E-13 113.9 30.1 225 336-599 50-292 (326)
226 2qe8_A Uncharacterized protein 99.2 7.6E-10 2.6E-14 121.9 22.6 273 735-1059 17-318 (343)
227 1kb0_A Quinohemoprotein alcoho 99.2 1.2E-08 4.1E-13 122.5 34.0 199 457-660 79-353 (677)
228 1kb0_A Quinohemoprotein alcoho 99.2 7.6E-09 2.6E-13 124.2 31.7 194 822-1018 189-516 (677)
229 1yiq_A Quinohemoprotein alcoho 99.2 7.6E-09 2.6E-13 124.5 31.0 383 457-903 72-534 (689)
230 3s94_A LRP-6, low-density lipo 99.2 1.9E-05 6.4E-10 93.2 59.0 520 417-1011 17-553 (619)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.2 6.5E-08 2.2E-12 108.2 36.4 151 457-619 55-217 (376)
232 1xip_A Nucleoporin NUP159; bet 99.2 4.7E-10 1.6E-14 122.5 17.9 176 398-595 39-230 (388)
233 2ghs_A AGR_C_1268P; regucalcin 99.2 1.3E-08 4.4E-13 111.1 29.5 225 737-999 51-292 (326)
234 3dr2_A Exported gluconolactona 99.2 7.4E-09 2.5E-13 112.0 27.3 232 394-645 42-299 (305)
235 3q7m_A Lipoprotein YFGL, BAMB; 99.1 7.8E-08 2.7E-12 107.6 34.7 276 350-662 56-346 (376)
236 2ece_A 462AA long hypothetical 99.1 8.7E-08 3E-12 104.3 32.5 233 809-1050 88-399 (462)
237 1yiq_A Quinohemoprotein alcoho 99.1 1.6E-08 5.5E-13 121.7 28.9 290 350-663 73-515 (689)
238 3hxj_A Pyrrolo-quinoline quino 99.1 8.4E-09 2.9E-13 113.2 21.8 301 446-917 24-324 (330)
239 2ece_A 462AA long hypothetical 99.1 4.9E-08 1.7E-12 106.3 26.9 239 341-597 88-399 (462)
240 1fwx_A Nitrous oxide reductase 99.0 7.1E-08 2.4E-12 109.0 27.9 346 455-922 15-436 (595)
241 3hxj_A Pyrrolo-quinoline quino 99.0 1.1E-08 3.6E-13 112.4 20.8 269 338-661 23-291 (330)
242 2hz6_A Endoplasmic reticulum t 99.0 7.2E-10 2.5E-14 123.1 8.7 192 407-619 8-202 (369)
243 3ei3_A DNA damage-binding prot 98.9 0.00049 1.7E-08 86.7 61.2 609 338-1007 330-1060(1158)
244 2hz6_A Endoplasmic reticulum t 98.9 4.7E-10 1.6E-14 124.6 4.7 190 855-1070 8-200 (369)
245 4a0p_A LRP6, LRP-6, low-densit 98.9 0.00041 1.4E-08 81.8 64.9 535 348-972 8-555 (628)
246 1npe_A Nidogen, entactin; glyc 98.9 6E-06 2.1E-10 86.9 34.1 224 397-635 36-263 (267)
247 1kv9_A Type II quinohemoprotei 98.9 1.2E-06 4.1E-11 105.0 32.1 375 457-905 68-520 (668)
248 1fwx_A Nitrous oxide reductase 98.9 1E-07 3.5E-12 107.8 21.0 235 812-1064 99-433 (595)
249 1npe_A Nidogen, entactin; glyc 98.8 9.4E-06 3.2E-10 85.4 34.5 257 408-675 1-261 (267)
250 3ei3_A DNA damage-binding prot 98.8 0.0012 4E-08 83.3 66.0 572 399-1063 329-1000(1158)
251 1kv9_A Type II quinohemoprotei 98.8 2.6E-06 8.8E-11 102.2 33.2 168 848-1018 234-497 (668)
252 1w6s_A Methanol dehydrogenase 98.8 5.7E-06 1.9E-10 96.6 33.9 167 848-1018 245-512 (599)
253 2iwa_A Glutamine cyclotransfer 98.7 1.3E-06 4.5E-11 89.6 23.2 200 804-1011 22-239 (266)
254 3s94_A LRP-6, low-density lipo 98.7 0.0013 4.3E-08 77.6 62.4 502 395-967 38-552 (619)
255 2ad6_A Methanol dehydrogenase 98.7 2.7E-05 9.2E-10 91.2 35.6 378 457-903 64-523 (571)
256 2iwa_A Glutamine cyclotransfer 98.7 3.3E-06 1.1E-10 86.6 23.9 216 833-1063 9-238 (266)
257 1flg_A Protein (quinoprotein e 98.7 3.9E-05 1.3E-09 89.9 36.4 379 458-903 71-545 (582)
258 1w6s_A Methanol dehydrogenase 98.7 1.4E-05 4.9E-10 93.2 31.8 383 457-902 64-531 (599)
259 2ad6_A Methanol dehydrogenase 98.7 1.1E-05 3.7E-10 94.6 30.8 111 501-619 64-195 (571)
260 1flg_A Protein (quinoprotein e 98.6 5.7E-05 2E-09 88.5 35.7 167 848-1018 250-525 (582)
261 3nol_A Glutamine cyclotransfer 98.6 5E-06 1.7E-10 83.9 22.0 185 444-642 45-244 (262)
262 2xe4_A Oligopeptidase B; hydro 98.6 1.1E-05 3.7E-10 98.4 27.7 250 336-612 175-461 (751)
263 3ott_A Two-component system se 98.5 0.0066 2.2E-07 74.3 72.0 572 334-1062 21-626 (758)
264 3nol_A Glutamine cyclotransfer 98.5 8.2E-06 2.8E-10 82.4 20.0 184 805-998 45-244 (262)
265 2fp8_A Strictosidine synthase; 98.5 6.8E-05 2.3E-09 81.3 29.4 268 329-609 13-313 (322)
266 2fp8_A Strictosidine synthase; 98.5 2.7E-05 9.3E-10 84.4 26.0 240 397-653 19-313 (322)
267 3nok_A Glutaminyl cyclase; bet 98.5 3.9E-05 1.3E-09 77.3 24.1 185 397-598 55-254 (268)
268 2p4o_A Hypothetical protein; p 98.5 8.9E-05 3.1E-09 79.6 29.1 228 397-643 32-278 (306)
269 3nok_A Glutaminyl cyclase; bet 98.5 6.6E-06 2.3E-10 82.9 18.2 184 804-998 56-254 (268)
270 2xbg_A YCF48-like protein; pho 98.4 0.00048 1.7E-08 74.4 34.3 234 802-1059 79-319 (327)
271 1k3i_A Galactose oxidase precu 98.4 1.1E-05 3.7E-10 97.1 22.7 277 339-642 190-530 (656)
272 3v64_C Agrin; beta propeller, 98.4 0.0008 2.7E-08 73.4 35.7 249 334-617 33-283 (349)
273 3mbr_X Glutamine cyclotransfer 98.4 6.9E-05 2.3E-09 75.0 24.2 186 443-642 22-223 (243)
274 3qqz_A Putative uncharacterize 98.4 0.00017 5.9E-09 73.4 27.2 207 328-562 20-251 (255)
275 1k3i_A Galactose oxidase precu 98.4 6.5E-05 2.2E-09 90.3 27.4 121 534-655 190-325 (656)
276 2p4o_A Hypothetical protein; p 98.4 0.0004 1.4E-08 74.5 30.9 227 735-1000 32-279 (306)
277 1ijq_A LDL receptor, low-densi 98.4 0.0012 3.9E-08 71.0 34.3 238 410-660 3-245 (316)
278 3mbr_X Glutamine cyclotransfer 98.3 7.6E-05 2.6E-09 74.7 22.8 187 802-998 20-223 (243)
279 3v65_B Low-density lipoprotein 98.3 0.00062 2.1E-08 75.4 32.7 249 335-618 77-327 (386)
280 3ott_A Two-component system se 98.3 0.017 5.8E-07 70.7 61.1 525 335-1008 63-625 (758)
281 3v64_C Agrin; beta propeller, 98.3 0.0011 3.9E-08 72.1 33.5 249 397-661 34-283 (349)
282 3v65_B Low-density lipoprotein 98.3 0.00077 2.6E-08 74.7 32.5 246 400-661 80-326 (386)
283 1ijq_A LDL receptor, low-densi 98.3 0.0019 6.5E-08 69.3 33.5 232 357-617 10-246 (316)
284 2xe4_A Oligopeptidase B; hydro 98.3 0.00018 6.3E-09 87.6 28.4 246 394-655 170-460 (751)
285 3qqz_A Putative uncharacterize 98.3 0.001 3.5E-08 67.6 29.2 217 838-1060 21-251 (255)
286 3p5b_L Low density lipoprotein 98.2 0.0023 7.9E-08 71.1 33.9 240 410-662 85-329 (400)
287 2xbg_A YCF48-like protein; pho 98.2 0.0043 1.5E-07 66.9 33.5 281 335-651 36-320 (327)
288 4hw6_A Hypothetical protein, I 98.1 0.0005 1.7E-08 77.3 26.5 248 804-1061 140-432 (433)
289 3tc9_A Hypothetical hydrolase; 98.1 0.00053 1.8E-08 77.1 26.7 246 804-1061 138-429 (430)
290 3p5b_L Low density lipoprotein 98.0 0.0087 3E-07 66.4 33.2 250 338-617 76-328 (400)
291 3tc9_A Hypothetical hydrolase; 98.0 0.0026 8.9E-08 71.4 28.9 239 336-608 138-429 (430)
292 4hw6_A Hypothetical protein, I 98.0 0.0019 6.6E-08 72.5 27.0 238 336-608 140-432 (433)
293 3sov_A LRP-6, low-density lipo 98.0 0.012 4.1E-07 62.8 32.0 239 410-661 6-246 (318)
294 3m0c_C LDL receptor, low-densi 97.9 0.012 4.2E-07 70.8 33.6 238 410-660 397-639 (791)
295 3sov_A LRP-6, low-density lipo 97.9 0.01 3.4E-07 63.4 29.6 233 356-618 12-247 (318)
296 3amr_A 3-phytase; beta-propell 97.8 0.0071 2.4E-07 63.8 26.2 197 814-1019 40-274 (355)
297 3kya_A Putative phosphatase; s 97.8 0.0058 2E-07 68.5 27.1 250 398-657 140-479 (496)
298 3m0c_C LDL receptor, low-densi 97.8 0.026 9E-07 67.9 33.9 251 336-617 386-640 (791)
299 3kya_A Putative phosphatase; s 97.7 0.016 5.6E-07 64.9 29.1 253 336-614 140-480 (496)
300 3amr_A 3-phytase; beta-propell 97.7 0.0073 2.5E-07 63.7 24.3 194 457-661 42-272 (355)
301 2xzh_A Clathrin heavy chain 1; 97.7 0.059 2E-06 55.5 31.5 235 341-610 73-333 (365)
302 2p9w_A MAL S 1 allergenic prot 97.6 0.0066 2.3E-07 63.4 22.4 202 804-1009 14-265 (334)
303 3a9g_A Putative uncharacterize 97.6 0.022 7.4E-07 61.9 27.0 226 803-1050 29-330 (354)
304 1n7d_A LDL receptor, low-densi 97.6 0.00039 1.3E-08 83.3 14.2 234 417-662 385-623 (699)
305 2ism_A Putative oxidoreductase 97.6 0.016 5.4E-07 63.1 25.3 228 804-1050 32-333 (352)
306 1n7d_A LDL receptor, low-densi 97.5 0.00042 1.5E-08 83.1 13.6 205 803-1017 406-622 (699)
307 1bpo_A Protein (clathrin); cla 97.5 0.12 4.2E-06 55.4 29.7 236 340-610 71-332 (494)
308 2xzh_A Clathrin heavy chain 1; 97.4 0.18 6.3E-06 51.9 35.4 231 807-1063 71-333 (365)
309 2g8s_A Glucose/sorbosone dehyd 97.3 0.046 1.6E-06 59.3 24.5 236 804-1060 19-350 (353)
310 2p9w_A MAL S 1 allergenic prot 97.3 0.16 5.4E-06 53.1 26.8 170 332-519 10-216 (334)
311 3sre_A PON1, serum paraoxonase 97.3 0.043 1.5E-06 58.8 23.4 208 398-617 51-308 (355)
312 2ism_A Putative oxidoreductase 97.2 0.098 3.3E-06 56.7 26.8 107 335-461 31-152 (352)
313 3a9g_A Putative uncharacterize 97.2 0.25 8.4E-06 53.5 29.3 233 334-597 28-330 (354)
314 3pbp_A Nucleoporin NUP82; beta 97.1 0.026 8.7E-07 60.7 19.5 110 807-918 25-159 (452)
315 2vpj_A Kelch-like protein 12; 97.1 0.029 9.9E-07 59.5 20.1 224 823-1073 31-287 (301)
316 3ii7_A Kelch-like protein 7; p 97.1 0.041 1.4E-06 58.5 21.2 233 815-1074 13-282 (306)
317 1bpo_A Protein (clathrin); cla 97.0 0.54 1.8E-05 50.6 34.2 259 554-918 47-332 (494)
318 2vpj_A Kelch-like protein 12; 97.0 0.041 1.4E-06 58.4 20.2 236 407-656 14-281 (301)
319 2xn4_A Kelch-like protein 2; s 96.9 0.083 2.8E-06 55.9 22.2 222 823-1071 30-283 (302)
320 2g8s_A Glucose/sorbosone dehyd 96.9 0.23 8E-06 53.7 25.5 237 397-641 18-341 (353)
321 3ii7_A Kelch-like protein 7; p 96.8 0.075 2.6E-06 56.4 20.8 235 409-657 13-276 (306)
322 4asc_A Kelch repeat and BTB do 96.8 0.13 4.3E-06 54.9 22.4 229 821-1074 11-287 (315)
323 3das_A Putative oxidoreductase 96.8 0.77 2.6E-05 48.9 29.6 99 805-905 204-326 (347)
324 2xn4_A Kelch-like protein 2; s 96.8 0.089 3.1E-06 55.7 20.7 235 408-656 16-279 (302)
325 1zgk_A Kelch-like ECH-associat 96.7 0.085 2.9E-06 56.1 19.7 236 811-1073 22-296 (308)
326 3sbq_A Nitrous-oxide reductase 96.6 1.2 4E-05 49.6 27.8 113 804-919 324-480 (638)
327 4asc_A Kelch repeat and BTB do 96.6 0.18 6E-06 53.8 21.9 232 411-657 8-281 (315)
328 2xtc_A F-box-like/WD repeat-co 96.5 0.0021 7.3E-08 51.4 3.9 35 1-35 1-35 (90)
329 3sre_A PON1, serum paraoxonase 96.5 0.67 2.3E-05 49.5 24.7 189 443-642 51-286 (355)
330 1tl2_A L10, protein (tachylect 96.3 0.038 1.3E-06 53.5 11.9 142 855-1008 3-162 (236)
331 3pbp_A Nucleoporin NUP82; beta 96.2 0.1 3.4E-06 56.2 15.9 123 336-470 67-208 (452)
332 1xi4_A Clathrin heavy chain; a 96.1 0.31 1.1E-05 60.7 21.4 233 807-1063 70-332 (1630)
333 2uvk_A YJHT; unknown function, 96.0 0.43 1.5E-05 51.7 21.1 239 812-1076 18-354 (357)
334 2be1_A Serine/threonine-protei 96.0 0.05 1.7E-06 57.7 12.5 198 857-1067 11-236 (339)
335 1zgk_A Kelch-like ECH-associat 95.9 0.24 8.2E-06 52.5 18.2 238 405-656 22-290 (308)
336 2woz_A Kelch repeat and BTB do 95.9 0.71 2.4E-05 49.0 21.6 227 419-658 25-292 (318)
337 1tl2_A L10, protein (tachylect 95.9 0.089 3E-06 51.0 12.3 149 845-1007 42-206 (236)
338 2woz_A Kelch repeat and BTB do 95.5 0.92 3.1E-05 48.1 20.9 224 823-1071 24-294 (318)
339 1xi4_A Clathrin heavy chain; a 95.5 0.43 1.5E-05 59.4 19.4 236 342-612 73-334 (1630)
340 1cru_A Protein (soluble quinop 95.4 1.6 5.4E-05 48.9 22.6 111 886-998 26-163 (454)
341 3das_A Putative oxidoreductase 95.3 3.8 0.00013 43.5 30.6 122 325-462 22-158 (347)
342 2uvk_A YJHT; unknown function, 95.0 1.2 4.2E-05 48.1 20.2 141 866-1015 168-348 (357)
343 1cru_A Protein (soluble quinop 94.7 2.8 9.6E-05 46.8 22.2 163 844-1010 27-260 (454)
344 3s25_A Hypothetical 7-bladed b 94.7 4.9 0.00017 41.9 24.3 183 339-567 57-258 (302)
345 3sbq_A Nitrous-oxide reductase 94.6 3.3 0.00011 46.2 21.1 195 812-1010 140-409 (638)
346 2be1_A Serine/threonine-protei 94.5 0.095 3.2E-06 55.6 8.8 194 457-658 12-236 (339)
347 1uuj_A Platelet-activating fac 94.2 0.037 1.3E-06 44.0 3.6 55 5-59 10-66 (88)
348 3b7f_A Glycosyl hydrolase, BNR 93.8 9.3 0.00032 41.7 28.0 260 802-1071 54-379 (394)
349 2zwa_A Leucine carboxyl methyl 92.5 5 0.00017 47.8 20.3 196 812-1013 396-639 (695)
350 2wg3_C Hedgehog-interacting pr 92.1 18 0.0006 40.3 26.3 56 397-452 14-79 (463)
351 4hvt_A Ritya.17583.B, post-pro 90.9 30 0.001 40.8 27.3 246 339-612 133-432 (711)
352 3qhy_B Beta-lactamase inhibito 90.9 15 0.0005 37.8 19.4 222 336-609 25-246 (282)
353 3s25_A Hypothetical 7-bladed b 90.5 18 0.00062 37.5 30.3 181 402-611 58-257 (302)
354 2zwa_A Leucine carboxyl methyl 90.0 11 0.00038 44.7 19.9 201 451-656 396-638 (695)
355 3q6k_A 43.2 kDa salivary prote 90.0 22 0.00074 38.1 19.9 171 466-639 124-340 (381)
356 4hvt_A Ritya.17583.B, post-pro 89.5 20 0.0007 42.3 21.3 241 404-652 137-429 (711)
357 3q6k_A 43.2 kDa salivary prote 88.6 14 0.00047 39.6 17.1 172 824-997 124-342 (381)
358 3b7f_A Glycosyl hydrolase, BNR 88.3 31 0.0011 37.3 22.3 205 856-1071 22-269 (394)
359 3qhy_B Beta-lactamase inhibito 87.6 27 0.00093 35.7 19.5 225 804-1065 25-249 (282)
360 2j4b_A TAF5, transcription ini 84.6 0.83 2.8E-05 40.9 4.2 55 72-127 33-87 (138)
361 2nxp_A Transcription initiatio 83.1 1.3 4.6E-05 40.6 5.1 57 72-128 52-108 (156)
362 3uc1_A DNA gyrase subunit A; D 80.9 58 0.002 34.1 26.3 158 802-966 94-279 (327)
363 2wg3_C Hedgehog-interacting pr 80.2 77 0.0026 35.1 30.3 105 804-908 15-160 (463)
364 4gq2_M Nucleoporin NUP120; bet 77.3 8.3 0.00028 47.6 11.0 42 979-1020 236-277 (950)
365 3no0_A DNA gyrase subunit A; D 77.0 67 0.0023 32.6 18.7 193 856-1061 35-245 (276)
366 3no0_A DNA gyrase subunit A; D 74.9 76 0.0026 32.2 21.0 193 809-1011 31-248 (276)
367 2j49_A Transcription initiatio 74.5 0.84 2.9E-05 41.3 0.9 34 67-102 31-64 (148)
368 4gq2_M Nucleoporin NUP120; bet 73.6 66 0.0023 39.6 17.7 37 845-882 237-273 (950)
369 3kci_A Probable E3 ubiquitin-p 69.8 1.2E+02 0.0042 32.4 27.0 162 737-916 107-292 (389)
370 4gco_A Protein STI-1; structur 61.8 33 0.0011 29.7 8.7 100 13-119 20-125 (126)
371 1zi0_A DNA gyrase subunit A; b 59.3 1.6E+02 0.0056 30.2 27.8 151 745-917 108-277 (307)
372 3kci_A Probable E3 ubiquitin-p 58.2 2E+02 0.0068 30.8 26.2 194 805-1009 107-345 (389)
373 3mkr_A Coatomer subunit epsilo 57.5 31 0.0011 35.4 9.0 54 6-59 65-126 (291)
374 4a9v_A PHOX; hydrolase, beta-p 56.0 28 0.00097 39.2 8.5 60 938-997 477-549 (592)
375 3zwu_A Alkaline phosphatase PH 55.6 22 0.00074 40.7 7.8 60 938-997 477-549 (592)
376 3mez_B Mannose-specific lectin 54.7 54 0.0019 27.8 8.5 59 940-1009 26-84 (113)
377 2k9m_A RNA polymerase sigma fa 53.9 17 0.00057 32.0 5.0 91 2-104 18-122 (130)
378 3f7f_A Nucleoporin NUP120; nuc 52.8 2E+02 0.007 33.4 15.1 30 855-884 230-259 (729)
379 3lpz_A GET4 (YOR164C homolog); 49.3 32 0.0011 35.8 7.1 113 38-190 16-132 (336)
380 4fhn_B Nucleoporin NUP120; pro 48.2 66 0.0022 40.6 11.4 37 845-882 239-275 (1139)
381 2wpv_A GET4, UPF0363 protein Y 45.7 40 0.0014 34.8 7.2 112 38-189 17-129 (312)
382 3uc1_A DNA gyrase subunit A; D 45.5 2.8E+02 0.0095 28.8 25.9 164 843-1012 94-282 (327)
383 4ga2_A E3 SUMO-protein ligase 43.1 1.2E+02 0.004 26.9 9.6 94 21-121 13-111 (150)
384 4fhn_B Nucleoporin NUP120; pro 43.1 9.5 0.00032 48.4 2.5 43 980-1022 239-281 (1139)
385 1suu_A DNA gyrase subunit A; t 41.6 3.1E+02 0.011 28.2 28.0 109 745-875 113-231 (312)
386 3f7f_A Nucleoporin NUP120; nuc 40.4 1.1E+02 0.0037 35.7 10.3 37 980-1018 223-259 (729)
387 3l6v_A GYRA, DNA gyrase subuni 39.8 3.6E+02 0.012 28.5 27.6 64 587-651 4-74 (370)
388 3zwu_A Alkaline phosphatase PH 39.5 90 0.0031 35.6 9.5 64 531-596 477-548 (592)
389 4a9v_A PHOX; hydrolase, beta-p 37.7 1.3E+02 0.0045 33.9 10.2 65 531-597 477-549 (592)
390 2vgx_A Chaperone SYCD; alterna 37.2 1E+02 0.0034 27.4 8.0 14 86-99 101-114 (148)
391 2zux_A YESW protein; beta-prop 37.1 4.9E+02 0.017 29.2 26.7 166 439-619 176-410 (591)
392 3u4t_A TPR repeat-containing p 36.9 87 0.003 31.0 8.5 112 5-120 2-119 (272)
393 2d68_A FOP, FGFR1OP; alpha hel 35.3 36 0.0012 26.8 3.7 29 7-35 20-48 (82)
394 1vk8_A Hypothetical protein TM 34.4 4.5 0.00015 33.9 -1.6 35 25-60 38-72 (106)
395 3upv_A Heat shock protein STI1 34.2 1.1E+02 0.0037 25.8 7.5 87 9-101 7-99 (126)
396 2zux_A YESW protein; beta-prop 34.0 5.5E+02 0.019 28.8 26.3 190 444-656 328-535 (591)
397 1kdl_A YOPD protein; yersinia, 32.0 26 0.00088 20.1 1.7 16 4-19 3-18 (26)
398 1wp5_A Topoisomerase IV; broke 31.4 4.5E+02 0.015 27.1 26.1 238 812-1062 3-277 (323)
399 2cn3_A Xyloglucanase, beta-1,4 31.3 7E+02 0.024 29.2 38.6 62 579-641 23-91 (737)
400 4gof_A Small glutamine-rich te 31.3 23 0.00079 25.0 1.8 16 4-19 1-16 (52)
401 2lni_A Stress-induced-phosphop 31.0 1.9E+02 0.0066 24.0 8.8 82 14-101 25-111 (133)
402 2kck_A TPR repeat; tetratricop 30.6 58 0.002 26.4 4.9 55 44-102 50-105 (112)
403 2k9l_A RNA polymerase sigma fa 30.5 46 0.0016 25.9 3.7 36 2-37 27-63 (76)
404 2dba_A Smooth muscle cell asso 30.5 2.2E+02 0.0074 24.3 9.2 15 45-59 76-90 (148)
405 3mkr_A Coatomer subunit epsilo 30.4 2.5E+02 0.0084 28.4 10.7 108 5-120 100-211 (291)
406 2xcb_A PCRH, regulatory protei 29.3 1.5E+02 0.005 25.8 7.7 14 86-99 64-77 (142)
407 4gcn_A Protein STI-1; structur 28.5 1.1E+02 0.0037 26.2 6.4 100 15-116 17-123 (127)
408 1zi0_A DNA gyrase subunit A; b 28.5 4.9E+02 0.017 26.5 30.0 113 802-917 94-226 (307)
409 1na0_A Designed protein CTPR3; 28.0 2.4E+02 0.0082 22.9 8.7 103 8-117 11-119 (125)
410 4asv_A Small glutamine-rich te 27.9 33 0.0011 27.4 2.4 19 1-19 15-33 (92)
411 3vtx_A MAMA; tetratricopeptide 27.5 1.6E+02 0.0055 26.8 8.0 15 86-100 119-133 (184)
412 3iug_A RHO/CDC42/RAC GTPase-ac 27.1 39 0.0013 33.2 3.5 89 8-104 40-141 (229)
413 3qou_A Protein YBBN; thioredox 26.9 2.1E+02 0.0072 28.8 9.4 94 21-121 133-231 (287)
414 4h3o_A Lectin; cadmium, plant 26.1 2.8E+02 0.0095 22.9 10.4 25 806-831 53-77 (105)
415 1elr_A TPR2A-domain of HOP; HO 26.0 1.7E+02 0.0057 24.3 7.3 95 8-102 6-107 (131)
416 3gyz_A Chaperone protein IPGC; 25.8 1.3E+02 0.0043 27.0 6.5 87 6-104 9-102 (151)
417 3mez_A Mannose-specific lectin 25.8 2.6E+02 0.0088 23.4 8.0 88 890-1009 22-109 (111)
418 3sz7_A HSC70 cochaperone (SGT) 25.3 1.4E+02 0.0049 26.6 7.0 89 7-101 12-106 (164)
419 3bu8_A Telomeric repeat-bindin 25.2 1.3E+02 0.0044 28.6 6.1 101 69-189 109-209 (235)
420 3q49_B STIP1 homology and U bo 24.9 1.6E+02 0.0055 25.0 7.0 89 6-100 9-103 (137)
421 2ho1_A Type 4 fimbrial biogene 24.4 3E+02 0.01 26.4 9.8 15 45-59 82-96 (252)
422 1elw_A TPR1-domain of HOP; HOP 24.0 2.8E+02 0.0094 22.1 8.7 99 11-116 10-113 (118)
423 2vyi_A SGTA protein; chaperone 23.5 3E+02 0.01 22.4 8.8 89 8-102 14-108 (131)
424 2zuy_A YESX protein; beta-prop 23.1 8.5E+02 0.029 27.5 25.6 42 579-620 368-415 (620)
425 3hx6_A Type 4 fimbrial biogene 23.1 5.2E+02 0.018 29.0 11.7 75 987-1065 203-287 (570)
426 2ho1_A Type 4 fimbrial biogene 23.0 4.6E+02 0.016 25.0 11.0 110 6-120 71-186 (252)
427 4i17_A Hypothetical protein; T 22.3 2.3E+02 0.0078 26.9 8.3 91 12-102 48-145 (228)
428 1wp5_A Topoisomerase IV; broke 21.7 6.7E+02 0.023 25.8 27.5 200 803-1009 39-277 (323)
429 1hxi_A PEX5, peroxisome target 21.7 1.2E+02 0.004 25.7 5.2 72 42-120 25-96 (121)
430 2ibo_A Hypothetical protein SP 21.6 8.4 0.00029 32.2 -2.2 32 28-60 28-59 (104)
431 2fo7_A Synthetic consensus TPR 21.3 2.3E+02 0.0078 23.4 7.3 101 13-120 8-114 (136)
432 2nsz_A Programmed cell death p 21.3 1E+02 0.0035 26.8 4.6 24 80-103 13-36 (129)
433 1oyi_A Double-stranded RNA-bin 21.2 61 0.0021 25.6 2.7 30 6-37 16-45 (82)
434 1lxj_A YBL001C, hypothetical 1 21.1 8.6 0.00029 32.2 -2.3 37 23-60 27-63 (104)
435 2ion_A PDCD4, programmed cell 21.0 1E+02 0.0035 27.8 4.6 21 80-100 15-35 (152)
436 2ovj_A Mgcracgap, RAC GTPase-a 20.7 62 0.0021 31.0 3.4 90 8-104 20-120 (201)
437 1yqh_A DUF77, IG hypothetical 20.7 10 0.00035 32.0 -1.9 33 27-60 32-64 (109)
438 4gyw_A UDP-N-acetylglucosamine 20.7 2.1E+02 0.0072 33.7 8.7 109 5-120 8-122 (723)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7e-69 Score=648.49 Aligned_cols=567 Identities=22% Similarity=0.338 Sum_probs=490.0
Q ss_pred eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
.+.|+||++.|++++|||||+ +||+|+.|++|+|||. +++.+.. +.+|...|.+++|||
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fsp 67 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSP 67 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECT
T ss_pred eeEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECC
Confidence 467999999999999999998 6899999999999995 6666654 778999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001358 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
||++||+++.|++|+|||+. ++.+ ..+.+|...|.+++|+||++ +|++++.|+.+++|+.. ........+|..
T Consensus 68 dg~~las~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~ 140 (577)
T 2ymu_A 68 DGQTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSS 140 (577)
T ss_dssp TSSEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSS
T ss_pred CCCEEEEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCC
Confidence 99999999999999999975 4433 37889999999999999999 89999999999999954 455667788999
Q ss_pred ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001358 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
.+..+.+.+ ++..+++++.++.+++|+... ........+...+..+.++|+++++++++. ++.|++||. +++
T Consensus 141 ~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~ 212 (577)
T 2ymu_A 141 SVWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQ 212 (577)
T ss_dssp CEEEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSC
T ss_pred ceeeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCc
Confidence 999998854 667899999999999998543 445566678889999999999999999986 667999995 677
Q ss_pred EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE
Q 001358 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 646 (1092)
.+..+.+|. ..|.+++|+|+++++++++.|+.|++||. +++.+..+..+ ...|.+++|+|+++++++++.|+.|
T Consensus 213 ~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i 286 (577)
T 2ymu_A 213 LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTV 286 (577)
T ss_dssp EEEEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEEecCC---CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 888888887 89999999999999999999999999996 46777777655 3468999999999999999999999
Q ss_pred EEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceec
Q 001358 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1092)
Q Consensus 647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 726 (1092)
++|+.. ++....+.+|...+.+++++ |+++.+++++.|+.+++|+..... ...
T Consensus 287 ~~w~~~-~~~~~~~~~h~~~v~~~~~~----------------------~~~~~l~t~~~d~~i~~w~~~~~~---~~~- 339 (577)
T 2ymu_A 287 KLWNRN-GQLLQTLTGHSSSVWGVAFS----------------------PDGQTIASASDDKTVKLWNRNGQH---LQT- 339 (577)
T ss_dssp EEEETT-SCEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTSCE---EEE-
T ss_pred EEEeCC-CcEEEEEecCCCCeEEEEEC----------------------CCCCEEEEEeCCCeEEEEeCCCCe---eEE-
Confidence 999964 56777888999999988886 788899999999999999965321 111
Q ss_pred ccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001358 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1092)
Q Consensus 727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~ 806 (1092)
+ .+|...+.+++|+|+++.+++++.+|.+++|+... ..+.... +|...|.
T Consensus 340 -~--~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~~~~----~~~~~v~ 389 (577)
T 2ymu_A 340 -L--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-----------------------QLLQTLT----GHSSSVR 389 (577)
T ss_dssp -E--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-----------------------CEEEEEE----CCSSCEE
T ss_pred -E--eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----------------------CEEEEec----CCCCCeE
Confidence 1 34788999999999999999999999999998422 1122221 3888999
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccc
Q 001358 807 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 885 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 885 (1092)
+++|+|||++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|
T Consensus 390 ~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~ 466 (577)
T 2ymu_A 390 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGH 466 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC
Confidence 999999999999998 799999995 5778889999999999999999 8999999999999999996 56788899999
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEc
Q 001358 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEA 964 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~ 964 (1092)
...|++++|+||+++|++++.|+.|++||... + .++...+|.. .|.+++|+|||++||+ +.|+.|++||.
T Consensus 467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~~---~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCSS---CEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCCC---CEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 99999999999999999999999999999654 2 3344455544 7999999999999999 57899999996
Q ss_pred CCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001358 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd 1006 (1092)
+++++.. +.+|.+.|++++|+|||++|+|++.|++|++||
T Consensus 538 -~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 538 -NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 5777766 568999999999999999999999999999997
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.2e-67 Score=630.38 Aligned_cols=565 Identities=21% Similarity=0.315 Sum_probs=484.2
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
.|.||++.|++++|||||++||+|+.|++|+|||. +++.+ .++.+|.+.|++++|+||++ +|++++.|++|+||
T Consensus 11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~---~~l~gh~~~V~~l~fspdg~--~las~~~d~~i~vW 84 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL---QTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLW 84 (577)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEE---EEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEE---EEEeCCCCCEEEEEECCCCC--EEEEEeCCCEEEEE
Confidence 38899999999999999999999999999999996 45444 37889999999999999999 89999999999999
Q ss_pred ECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
| .+++.+..+.+|...|.+++|++ ++.+|++++.|+.+++|+... ........+...+..+.++|+++.++.++.
T Consensus 85 d-~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~- 159 (577)
T 2ymu_A 85 N-RNGQLLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD- 159 (577)
T ss_dssp E-TTSCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTC-CEEEEECCCSSCEEEEEECTTSSCEEEEET-
T ss_pred E-CCCCEEEEEECCCCCEEEEEECC--CCCEEEEEcCCCceeeccccc-ceeeeccCCCCceeeeeeecCCccceeccc-
Confidence 9 57889999999999999999954 778999999999999999754 445566777889999999999999998875
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
+..+.+|+.. .........+. ..+..+.++|+++++++++.|+.|++||. +++.+..+..+. ..|.+++|
T Consensus 160 ---~~~~~~~~~~-~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~--~~v~~~~~ 229 (577)
T 2ymu_A 160 ---DKTVKLWNRN-GQLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVRGVAF 229 (577)
T ss_dssp ---TSEEEEECTT-SCEEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS--SCEEEEEE
T ss_pred ---ccceeccccc-eeeeeeccCCC---cceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCC--CCEEEEEE
Confidence 5568888864 44455556655 89999999999999999999999999996 567777777654 46899999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccccc
Q 001358 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1092)
Q Consensus 631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 710 (1092)
+|++++|++++.|+.|++|+.. ++.+..+.+|...+.+++++ |+++.+++++.|+.+
T Consensus 230 s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~----------------------~d~~~l~~~~~d~~i 286 (577)
T 2ymu_A 230 SPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFR----------------------PDGQTIASASDDKTV 286 (577)
T ss_dssp CTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCE
T ss_pred CCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEc----------------------CCCCEEEEEeCCCEE
Confidence 9999999999999999999964 56788888999999988886 788899999999999
Q ss_pred ceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCc
Q 001358 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 790 (1092)
Q Consensus 711 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1092)
++|+.... ... ...+|...|.+++|+|+++.+++++.||.+++|+.....
T Consensus 287 ~~w~~~~~---~~~----~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~----------------------- 336 (577)
T 2ymu_A 287 KLWNRNGQ---LLQ----TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH----------------------- 336 (577)
T ss_dssp EEEETTSC---EEE----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----------------------
T ss_pred EEEeCCCc---EEE----EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----------------------
Confidence 99995421 111 113588899999999999999999999999999854321
Q ss_pred eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 001358 791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 869 (1092)
Q Consensus 791 ~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~ 869 (1092)
+... . +|...+.+++|+|+++++++++ ++.+++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|+
T Consensus 337 ~~~~--~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 337 LQTL--T--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVK 410 (577)
T ss_dssp EEEE--C--CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEE
T ss_pred eEEE--e--CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEE
Confidence 2221 1 3888999999999999999998 699999995 5788889999999999999999 899999999999999
Q ss_pred EEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC
Q 001358 870 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 870 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
+||. +++.+..+.+|...|++++|+||+++|++++.|++|++||.... .+....++.. .|.+++|+||++
T Consensus 411 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~~---~v~~~~~spd~~ 480 (577)
T 2ymu_A 411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHSS---SVRGVAFSPDGQ 480 (577)
T ss_dssp EECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCSS---CEEEEEECTTSC
T ss_pred EEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCCC---CEEEEEEcCCCC
Confidence 9995 57888999999999999999999999999999999999997642 2333344443 799999999999
Q ss_pred EEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCcc
Q 001358 950 RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1028 (1092)
Q Consensus 950 ~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1028 (1092)
+|++ +.|+.|++||. +++++.. +.+|...|++++|+|||++|++++.||.|++||. +++.+..+. .|.
T Consensus 481 ~las~~~d~~i~iw~~-~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--------~h~ 549 (577)
T 2ymu_A 481 TIASASDDKTVKLWNR-NGQLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--------GHS 549 (577)
T ss_dssp EEEEEETTSEEEEEET-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--------CCS
T ss_pred EEEEEeCCCEEEEEcC-CCCEEEE-EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--------CCC
Confidence 9999 57899999995 5777766 5689999999999999999999999999999996 577776665 245
Q ss_pred CcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001358 1029 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1029 ~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
..|. +++|+| |+.+|++++.||+|++||
T Consensus 550 ~~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 550 SSVW--GVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CCEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 5665 678999 589999999999999997
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.1e-67 Score=630.41 Aligned_cols=576 Identities=15% Similarity=0.183 Sum_probs=476.5
Q ss_pred cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.+++.+.+++|||||+ +||+++ +++|+|||+.+++.... +.+|...|++++|||||++|
T Consensus 16 ~~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~l 74 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC 74 (611)
T ss_dssp CCTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred cccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEE
Confidence 4577899999999998 578876 57999999998876654 77999999999999999999
Q ss_pred EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC----CcEEEEECCCCceeEEEecCCcc
Q 001358 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
|+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+||++ .|++++.+ +.|++|| +++.+..+.+|...
T Consensus 75 asg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~ 149 (611)
T 1nr0_A 75 ASGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARA 149 (611)
T ss_dssp EEEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSC
T ss_pred EEEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCC
Confidence 999999999999998665432 236789999999999999999 67777754 3566666 67778889999999
Q ss_pred eEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001358 488 VYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 488 v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
|++++|+| ++. .|++++.|++|++||..+.+....+..|...|.+++|+|||++|++++. ++.|++||..+++
T Consensus 150 v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 150 MNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGT 223 (611)
T ss_dssp EEEEEECS--SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCC
T ss_pred ceEEEECC--CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCc
Confidence 99999976 444 6999999999999999888888889999999999999999999999986 6679999999999
Q ss_pred EEEEEe-------eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCC-CCCceEEEccCCCEEE
Q 001358 567 IKRTYQ-------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLA 638 (1092)
Q Consensus 567 ~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~ 638 (1092)
.+..+. +|. +.|.+++|+|++++|++++.|++|++||+.+++.+..+..+... ..+..+.| ++..++
T Consensus 224 ~~~~~~~~~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 298 (611)
T 1nr0_A 224 KTGVFEDDSLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALV 298 (611)
T ss_dssp EEEECBCTTSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEE
T ss_pred EeeeeccccccccccC---CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEE
Confidence 888874 455 89999999999999999999999999999999998888654221 12334445 788999
Q ss_pred EEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeec
Q 001358 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~ 718 (1092)
+++.|+.+++|+...+.....+.+|...|.+++++ ||++++++++.|++|++||+..+
T Consensus 299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s----------------------pdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSS----------------------ADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTTC
T ss_pred EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe----------------------CCCCEEEEEeCCCcEEEEECCCC
Confidence 99999999999999988888889999999999996 78999999999999999998643
Q ss_pred cCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCC
Q 001358 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 798 (1092)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 798 (1092)
... .....+|...|.+++|++++ .+++++.|+.+++|+......... . .....
T Consensus 357 ~~~-----~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~-~~~~~--- 409 (611)
T 1nr0_A 357 ISN-----RVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------K-AVANK--- 409 (611)
T ss_dssp CEE-----ECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------S-CCEEE---
T ss_pred cee-----eecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------c-eeeee---
Confidence 221 11123588899999999877 588999999999998754321000 0 00001
Q ss_pred CCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001358 799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 799 ~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1092)
......+++|+|+|+.++++.++.+++|+ .++ +..+. |...+.+++|+| |+++||+|+.|++|++||+.++..
T Consensus 410 --~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~ 482 (611)
T 1nr0_A 410 --LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASV 482 (611)
T ss_dssp --CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEE
T ss_pred --cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCce
Confidence 23346789999999988888899999999 344 45554 778899999999 899999999999999999987653
Q ss_pred --eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-E
Q 001358 879 --ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V 954 (1092)
Q Consensus 879 --~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~ 954 (1092)
+.. .+|...|++++|||||++|++++.|++|++|++.+ ++... .....+|. ..|.+++|+|||++||+ +
T Consensus 483 ~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~---~~V~~v~fspdg~~lasgs 555 (611)
T 1nr0_A 483 SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHT---AKVACVSWSPDNVRLATGS 555 (611)
T ss_dssp EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCS---SCEEEEEECTTSSEEEEEE
T ss_pred eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeecc---cceeEEEECCCCCEEEEEE
Confidence 334 67999999999999999999999999999999987 33211 00122244 37999999999999999 6
Q ss_pred eCCcEEEEEcCCceeee-eeccCC-CcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358 955 HETHLAIYEAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 955 ~d~~v~lwd~~~~~~~~-~~~~~h-~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
.|++|++||+.++.... ....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus 556 ~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 556 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 89999999998876332 446789 89999999999998 9999999999999974
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.1e-65 Score=670.05 Aligned_cols=619 Identities=14% Similarity=0.178 Sum_probs=513.1
Q ss_pred eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
....+.+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s 666 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFS 666 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred ceEEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEe
Confidence 3457789999999999999998 689999999999999999987765 77899999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001358 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
|||++||+++.|++|+|||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.
T Consensus 667 ~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~ 743 (1249)
T 3sfz_A 667 SDDSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 743 (1249)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred cCCCEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence 999999999999999999999987655 67899999999999997655589999999999999999999999999999
Q ss_pred cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------------CCCceEEEEEecCCCEEEEEecCCC
Q 001358 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------------PGLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------------~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
..|.+++|++ ++.++++++.||.|++||+.+......+.. ....+.+++|+|+|+.+++++
T Consensus 744 ~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---- 817 (1249)
T 3sfz_A 744 NSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA---- 817 (1249)
T ss_dssp SCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE----
T ss_pred CCEEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc----
Confidence 9999999965 678999999999999999988766554432 123678899999999999986
Q ss_pred CceeEEEEeCCCCeEEEEEe-eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358 553 GESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
++.+.+||..++.....+. +|. ..+.+++|+|++..+++++.||.|++||+.++..+..+..|. ..|.+++|+
T Consensus 818 -~~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~s 891 (1249)
T 3sfz_A 818 -KNKVLLFDIHTSGLLAEIHTGHH---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFS 891 (1249)
T ss_dssp -TTEEEEEETTTCCEEEEEECSSS---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEEC
T ss_pred -CCcEEEEEecCCCceeEEcCCCC---CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceEEEEEC
Confidence 4569999999999888776 444 899999999999999999999999999999999998887664 469999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccc
Q 001358 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1092)
|+++++++++.||.|++|+..+......... .......+ .+++..++.....+.+.
T Consensus 892 pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 947 (1249)
T 3sfz_A 892 PDGSSFLTASDDQTIRVWETKKVCKNSAIVL--KQEIDVVF----------------------QENETMVLAVDNIRGLQ 947 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEEHHHHHSCCSSSE--EEEEEEEE----------------------ETTEEEEEEEESSSSEE
T ss_pred CCCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeEEE----------------------cCCCcEEEEecCCcceE
Confidence 9999999999999999999764321111110 00011111 13344444455555555
Q ss_pred eeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCce
Q 001358 712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 791 (1092)
Q Consensus 712 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1092)
++...... .. ......+.+++++|+++.+++++.+|.+++|++.... ..
T Consensus 948 ~~~~~~~~---~~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~----------------------~~ 996 (1249)
T 3sfz_A 948 LIAGKTGQ---ID------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR----------------------VF 996 (1249)
T ss_dssp EEEESSCC---EE------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS----------------------CE
T ss_pred EEecCcce---EE------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc----------------------ee
Confidence 55533211 11 1135679999999999999999999999999875432 12
Q ss_pred eeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001358 792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 870 (1092)
Q Consensus 792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i 870 (1092)
.. +. +|...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...+.+++|+| ++ .+++++.||.|++
T Consensus 997 ~~--~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 997 SS--GV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKV 1069 (1249)
T ss_dssp EE--CC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEE
T ss_pred ee--cc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEE
Confidence 22 11 4889999999999999999997 7999999999988764 557899999999999 65 6788999999999
Q ss_pred EEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCE
Q 001358 871 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950 (1092)
Q Consensus 871 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 950 (1092)
||+.+++.+..+.+|.+.|++++|+||+++|++++.||+|++||+.+++ .+....+|.. .|.+++|+|||++
T Consensus 1070 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~~ 1141 (1249)
T 3sfz_A 1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGIL 1141 (1249)
T ss_dssp EETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSSE
T ss_pred EECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eeeeeccCCC---cEEEEEECCCCCE
Confidence 9999999999999999999999999999999999999999999999865 3445555554 7999999999999
Q ss_pred EEE-EeCCcEEEEEcCCceeeeee--------ccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccc
Q 001358 951 FLL-VHETHLAIYEAEELTCLKQW--------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021 (1092)
Q Consensus 951 la~-~~d~~v~lwd~~~~~~~~~~--------~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~ 1021 (1092)
|++ +.|+.|++||+.+++.+..+ ..+|.+.|++++|||||++|++++ |.|++||+.+++.+..+.
T Consensus 1142 lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~---- 1215 (1249)
T 3sfz_A 1142 LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFY---- 1215 (1249)
T ss_dssp EEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCC----
T ss_pred EEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeee----
Confidence 999 57899999999999887654 256899999999999999999885 899999999998876554
Q ss_pred cCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001358 1022 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 1022 ~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
.|...|. +++|+| |+.+|++++.||.|++|++.+
T Consensus 1216 ----~~~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1216 ----TNGTNLK--KIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp ----CSSCCCC--CCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred ----ccCCccc--EEEECC-CCCEEEEecCCcEEEEEeecC
Confidence 1234454 567888 578999999999999999864
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.5e-63 Score=601.88 Aligned_cols=572 Identities=11% Similarity=0.106 Sum_probs=456.6
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC
Q 001358 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~ 473 (1092)
.+.+.+.+++|+|||++||+++ ++.|++|++.+++... .+.+|...|++++|+|||+ +|++|+.|++|+|||+.
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~--~lasg~~d~~v~lWd~~ 89 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDTT 89 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEESS
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe---EecCCCCceEEEEECCCCc--EEEEEeCCCCEEEeECC
Confidence 4677889999999999999997 4689999998876554 6889999999999999999 89999999999999987
Q ss_pred CCc--eeEEEecCCcceEEEeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCceEEEEEecCCC-EEEE
Q 001358 474 TGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFS 546 (1092)
Q Consensus 474 ~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~ 546 (1092)
+++ ....+.+|.++|.+++|++ ++++|++++.+ +.|++|| .+.....+.+|...|.+++|+|++. .|++
T Consensus 90 ~~~~~~~~~~~~~~~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s 165 (611)
T 1nr0_A 90 QTTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIIS 165 (611)
T ss_dssp STTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred CCcceeeEeecccCCceEEEEECC--CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEE
Confidence 554 4567889999999999955 67889988865 3677776 5556667888999999999999997 5888
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----CC
Q 001358 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GG 621 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~ 621 (1092)
++. ++.|++||..+++....+.+|. ..|.+++|+|+++++++++.|++|++||..+++.+..+... ++
T Consensus 166 ~s~----D~~v~lwd~~~~~~~~~l~~H~---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h 238 (611)
T 1nr0_A 166 GSD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 238 (611)
T ss_dssp EET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred EeC----CCeEEEEECCCCeEeeeecccc---CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccccccc
Confidence 876 6679999999999999999888 89999999999999999999999999999999988887421 34
Q ss_pred CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccc---cceeeeecCCcccccccccCCceeecCCCCCCc
Q 001358 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD---NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV 698 (1092)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 698 (1092)
...|.+++|+|++++|++++.|++|++||+.+++.+..+..+.. ....+. .++
T Consensus 239 ~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~ 294 (611)
T 1nr0_A 239 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII------------------------WTK 294 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE------------------------ECS
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE------------------------EcC
Confidence 45799999999999999999999999999998877766543211 111111 247
Q ss_pred ccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCccccccc
Q 001358 699 KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKV 778 (1092)
Q Consensus 699 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~ 778 (1092)
+.+++++.|+.+++|+....... ....+|...|.+++|+|+|+.+++++.|+.+++|++...
T Consensus 295 ~~l~s~s~d~~i~~~~~~~~~~~------~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~------------ 356 (611)
T 1nr0_A 295 QALVSISANGFINFVNPELGSID------QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG------------ 356 (611)
T ss_dssp SCEEEEETTCCEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------------
T ss_pred CEEEEEeCCCcEEEEeCCCCCcc------eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC------------
Confidence 78999999999999996533211 112358899999999999999999999999999986543
Q ss_pred CCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEE---ecCCCCCeEEEEEcCCC
Q 001358 779 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT---IMPPSPTATSLAFNPHD 855 (1092)
Q Consensus 779 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d 855 (1092)
.+... + ..+|...|.+++|++++.++..+.|+.+++|+..++..... .........+++|+| +
T Consensus 357 ----------~~~~~--~-~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d 422 (611)
T 1nr0_A 357 ----------ISNRV--F-PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-D 422 (611)
T ss_dssp ----------CEEEC--S-SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-T
T ss_pred ----------ceeee--c-ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-C
Confidence 21111 1 12488999999999888655555589999999876543210 011234567899999 7
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001358 856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
+.+++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++.... +.. .+|.
T Consensus 423 g~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~-- 491 (611)
T 1nr0_A 423 GDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP-- 491 (611)
T ss_dssp SSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS--
T ss_pred CcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC--
Confidence 8777776 467899998 344 55555 88899999999999999999999999999998754322 122 2333
Q ss_pred CCCceEEEEecCCCEEEE-EeCCcEEEEEcCC-ceeeee-eccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 001358 936 APSETHIQFHKDQTRFLL-VHETHLAIYEAEE-LTCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 936 ~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~-~~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~ 1012 (1092)
..|.+++|||||++|++ +.|++|++||+.+ ++.... ...+|...|.+++|||||++|++++.|++|++|++.++..
T Consensus 492 -~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 492 -AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp -SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred -CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence 37999999999999999 6889999999987 666554 3445999999999999999999999999999999998753
Q ss_pred EE-eeccccccCCCCc-cCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358 1013 QC-RILSTAYLRPTTS-CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1013 ~~-~~~~~~~~~~~~~-~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.. ... ..| ...|. +++|+|+ +. |++++.||+|++|+++
T Consensus 571 ~~~~~~-------~~h~~~~v~--~v~fs~d-~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 571 HPIIIK-------GAHAMSSVN--SVIWLNE-TT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp CCEEET-------TSSTTSCEE--EEEEEET-TE-EEEEETTSCEEEEECC
T ss_pred ccchhh-------ccCcccCee--EEEEcCC-CE-EEEecCCCCEEEEecc
Confidence 21 111 113 34455 6788884 55 9999999999999983
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-60 Score=581.95 Aligned_cols=559 Identities=11% Similarity=0.155 Sum_probs=484.6
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCC----CceeeeeeeeeecccccceeEEeeecCCCCc-EEEEEEC
Q 001358 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWS 405 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~----~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~-V~~l~~s 405 (1092)
..|.+.|.+++|||||+ +||+++ ++.|+|||+.++ +.... +.+|... |.+++|+
T Consensus 15 ~~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~s 73 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFS 73 (615)
T ss_dssp CCCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEEC
T ss_pred CCccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEEC
Confidence 36888999999999999 577776 789999999988 65544 7789999 9999999
Q ss_pred C--CCCEEEEEeCCCEEEEEEccCCC-----CccceEEecccccceeEEEeeCCCCcEEEEEEeCC----CcEEEEECCC
Q 001358 406 P--DGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVT 474 (1092)
Q Consensus 406 p--dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~ 474 (1092)
| |+++||+++.||.|++||+.++. .......+.+|...|.+++|+|+++ ++++++.+ +.|++|| +
T Consensus 74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~ 149 (615)
T 1pgu_A 74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--S 149 (615)
T ss_dssp SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--T
T ss_pred cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--C
Confidence 9 99999999999999999997651 1123346778999999999999999 78888877 6788887 7
Q ss_pred CceeEEEecCCcceEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCceEEecCCCC---ceEEEEEecC-CCEEEEEec
Q 001358 475 GSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGT 549 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~i~~~~~s~d-g~~l~~~~~ 549 (1092)
++.+..+.+|...|.+++|++ ++. ++++++.||.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred CCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence 788899999999999999965 444 899999999999999999888888888888 9999999999 999999986
Q ss_pred CCCCceeEEEEeCCCCeEEEEE-e---eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC--CC
Q 001358 550 SKEGESFLVEWNESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LP 623 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~ 623 (1092)
++.|++||+.+++.+..+ . .|. ..|.+++|+ +++++++++.|+.|++||+.+++.+..+..+.. ..
T Consensus 228 ----dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 228 ----DRKISCFDGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299 (615)
T ss_dssp ----TCCEEEEETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred ----CCeEEEEECCCCCEeEEecccccccC---CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence 567999999999999888 5 565 899999999 999999999999999999999999988876521 12
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccccee
Q 001358 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
.+.++.|+ +++++++++.||.|++|++.+++.+..+.+|...+.++++ |. +++
T Consensus 300 ~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-------------------------l~~ 352 (615)
T 1pgu_A 300 QQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-------------------------LIS 352 (615)
T ss_dssp CEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-------------------------TEE
T ss_pred ceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-------------------------cEE
Confidence 45677775 8999999999999999999999899999999999998888 52 788
Q ss_pred eccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccc
Q 001358 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 783 (1092)
Q Consensus 704 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~ 783 (1092)
++.|+.+++|++. .+. ..|...|.+++| +++..+++++.|+.+++|++....
T Consensus 353 ~~~dg~i~~w~~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~---------------- 404 (615)
T 1pgu_A 353 GSYDGRIMEWSSS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHE---------------- 404 (615)
T ss_dssp EETTSCEEETTTT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEE----------------
T ss_pred ECCCCeEEEEEch--------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCc----------------
Confidence 9999999999976 111 458899999999 667789999999999999875432
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 001358 784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 863 (1092)
Q Consensus 784 ~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~ 863 (1092)
....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.+++|+ +++|++++
T Consensus 405 -----------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~ 463 (615)
T 1pgu_A 405 -----------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGL 463 (615)
T ss_dssp -----------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEE
T ss_pred -----------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEee
Confidence 1125788999999999999888999999999999988887 88899999998 67999999
Q ss_pred C-CCeEEEEEcCCceee-EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC-CcCCCCCce
Q 001358 864 D-DSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSET 940 (1092)
Q Consensus 864 ~-dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~ 940 (1092)
. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++ .+....+ |.. .|.
T Consensus 464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~h~~---~v~ 535 (615)
T 1pgu_A 464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-----VKTSRWAFRTS---KIN 535 (615)
T ss_dssp TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEECCSCCCSS---CEE
T ss_pred cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc-----ceeEeecCCCC---cee
Confidence 9 999999999988766 7788899999999999999999999999999999999865 3344444 443 799
Q ss_pred EEEEec----------CCCEEEE-EeCCcEEEEEcCCc-eeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358 941 HIQFHK----------DQTRFLL-VHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 941 ~l~~s~----------dg~~la~-~~d~~v~lwd~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
+++|+| ++++|++ +.|+.|++||+.++ +++.. +.+|...|.+++|+|||+ |++++.||+|++|++.
T Consensus 536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh-hhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 999999 9999999 57899999999988 55554 678999999999999999 9999999999999997
Q ss_pred CC
Q 001358 1009 NL 1010 (1092)
Q Consensus 1009 ~~ 1010 (1092)
++
T Consensus 614 ~~ 615 (615)
T 1pgu_A 614 LE 615 (615)
T ss_dssp --
T ss_pred cC
Confidence 53
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.3e-58 Score=607.96 Aligned_cols=587 Identities=16% Similarity=0.188 Sum_probs=497.5
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.+++|||||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|++|++||
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIWD 685 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEEE
Confidence 77899999999999999999999999999999999987554 7889999999999999999 899999999999999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+.+++.+..+.+|...|.+++|++..++.++++++.||.|++||+.++.....+..|...|.+++|+|+++++++++.
T Consensus 686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~-- 763 (1249)
T 3sfz_A 686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA-- 763 (1249)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES--
T ss_pred CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC--
Confidence 999999999999999999999988778889999999999999999999999999999999999999999999999986
Q ss_pred CCceeEEEEeCCCCeEEEEEeecc----------ccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001358 552 EGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1092)
++.|++||+.+++....+.... .....+.+++|+|++..+++++ ++.+.+||..++.....+... +
T Consensus 764 --dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~-~ 839 (1249)
T 3sfz_A 764 --DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG-H 839 (1249)
T ss_dssp --SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS-S
T ss_pred --CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC-C
Confidence 6679999999998877765321 0123688899999999999887 689999999999988877632 2
Q ss_pred CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccc
Q 001358 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
...+.+++|+|+++++++++.||.|++|+..++..+..+.+|...|.+++++ |+++.+
T Consensus 840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------------------pdg~~l 897 (1249)
T 3sfz_A 840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS----------------------PDGSSF 897 (1249)
T ss_dssp SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC----------------------CCCCEE
Confidence 3579999999999999999999999999999999999999999999999996 688899
Q ss_pred eeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCc
Q 001358 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1092)
Q Consensus 702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~ 781 (1092)
++++.|+.+++|++......... .......+.+.+++..+++....+.+.++.....
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 954 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAI--------VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG--------------- 954 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSS--------SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC---------------
T ss_pred EEEeCCCeEEEEEccccceeeee--------cccceeeEEEcCCCcEEEEecCCcceEEEecCcc---------------
Confidence 99999999999997643222111 1223345667777777777777777777654322
Q ss_pred cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001358 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860 (1092)
Q Consensus 782 ~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la 860 (1092)
..... +...+.+++|+|+++++++++ +|.|++||+.+++....+.+|...|++++|+| ++++|+
T Consensus 955 -------~~~~~-------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~ 1019 (1249)
T 3sfz_A 955 -------QIDYL-------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLI 1019 (1249)
T ss_dssp -------CEEEE-------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEE
T ss_pred -------eEEEc-------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEE
Confidence 11111 456799999999999999998 69999999999999999999999999999999 899999
Q ss_pred EEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001358 861 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 940 (1092)
Q Consensus 861 sg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1092)
+++.||.|++||+.+++... +.+|...|.+++|+|++ .+++++.||.|++||+.+++.. ....++.. .|.
T Consensus 1020 s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~~~~~~~---~v~ 1089 (1249)
T 3sfz_A 1020 SSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIE-----RDFTCHQG---TVL 1089 (1249)
T ss_dssp EECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCC-----EEEECCSS---CCC
T ss_pred EEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCcee-----EEEcccCC---cEE
Confidence 99999999999999988764 56799999999999975 6788999999999999987633 23333433 689
Q ss_pred EEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccc
Q 001358 941 HIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019 (1092)
Q Consensus 941 ~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~ 1019 (1092)
+++|+|||+++++ +.|++|++||+.+++++.. +.+|...|++++|||||++|++++.||+|++||+.+++....+.+.
T Consensus 1090 ~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~ 1168 (1249)
T 3sfz_A 1090 SCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1168 (1249)
T ss_dssp CEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCC
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCcceeee-eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccc
Confidence 9999999999999 5889999999999988876 5689999999999999999999999999999999999887665322
Q ss_pred cccCC-CCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001358 1020 AYLRP-TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus 1020 ~~~~~-~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
..... ..|...|. +++|+| |+.++++++ |.|++||+.....
T Consensus 1169 ~~~~~~~~~~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1169 SVEEGTATHGGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp C-------CCSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred cccccccccCceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 21111 12445555 788999 578888885 9999999976553
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-57 Score=566.66 Aligned_cols=593 Identities=11% Similarity=0.093 Sum_probs=449.5
Q ss_pred EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
....||.+.|++++|+|||+ +||+|+.||+|+|||..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 34459999999999999998 79999999999999988765543 224788999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee---------
Q 001358 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT--------- 478 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~--------- 478 (1092)
|++|++++.|++|++||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||+|++||++++++.
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999987655 443 678899999999999 8999999999999999988764
Q ss_pred --EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------------------CCceEEEEEe
Q 001358 479 --YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYS 538 (1092)
Q Consensus 479 --~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------------------~~~i~~~~~s 538 (1092)
..+.+|.++|.+++|+|. ++..+++|+.||.| +||+++.+....+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 234679999999999764 34689999999999 9999998877766654 3579999999
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCCCeEEEE--Ee---ecc----------ccCCceEEEEEc----CCC-CEEEEEeC
Q 001358 539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFD----TAK-DQILAAGD 598 (1092)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~~----------~~~~~v~~~~~~----~~~-~~l~~~s~ 598 (1092)
|+|++|++++. ++.|++||..+++.+.. +. +|. .+...|.+++|+ |++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999987 66799999999987654 21 121 123479999995 443 45666766
Q ss_pred C-----CeEEEEECC------------------CCceEEEEeCCCCCCCCceEEEcc----------CCCEEEEEeCCCe
Q 001358 599 D-----HVIKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENR 645 (1092)
Q Consensus 599 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~~~~~dg~ 645 (1092)
+ +.+.+|++. +++....+... +...+..+++.+ ++..+++++.||.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899842 22334444321 123567777755 3457899999999
Q ss_pred EEEEECCCCCeeee-------cccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeec
Q 001358 646 IKILETPESNSVDA-------AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 646 i~iw~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~ 718 (1092)
|++|++.++..... +..|...|+++++++ ...++|+....
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~---------------------------------~~~~~w~~~~~ 422 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAAS---------------------------------VPNKLWLGALS 422 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEE---------------------------------EEHHHHHHHHH
T ss_pred EEEEECCCCCcccccccCCCcccccCCCeeEEEEEE---------------------------------cCHHHHHHHHh
Confidence 99999977643322 334445566555542 12234542211
Q ss_pred cCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecC--
Q 001358 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT-- 796 (1092)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-- 796 (1092)
..... ..+..+|...+..++|+|+++.+++++.|++|++||+....... ..+ ....+
T Consensus 423 ~~~~~---~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~~---------~~~~l~~ 481 (902)
T 2oaj_A 423 AAQNK---DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NAS---------FEVNLSR 481 (902)
T ss_dssp TTBCC---CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TBC---------EEEEHHH
T ss_pred cccCC---CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------Cce---------EEeechh
Confidence 11011 11234577778889999999999999999999999987642100 000 00000
Q ss_pred -CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCc-----------------------------------------
Q 001358 797 -TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTF----------------------------------------- 833 (1092)
Q Consensus 797 -~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~----------------------------------------- 833 (1092)
...+|...|.+++|+|||++||+++ ||+|+|||+.++
T Consensus 482 ~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (902)
T 2oaj_A 482 TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGV 561 (902)
T ss_dssp HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTC
T ss_pred hcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCC
Confidence 0114888999999999999999998 799999999866
Q ss_pred ----eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeE-----eec-cccCCeEEEEEc-----CCC
Q 001358 834 ----KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL 898 (1092)
Q Consensus 834 ----~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----pdg 898 (1092)
+++..+.+|.+.|++++||| || +||+|+.|++|+|||+.++..+. .+. +|.+.|++++|| |||
T Consensus 562 ~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg 639 (902)
T 2oaj_A 562 RQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDG 639 (902)
T ss_dssp SEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSS
T ss_pred CCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCC
Confidence 24677889999999999999 88 99999999999999998877653 343 899999999999 886
Q ss_pred ---CEEEEEeCCCcEEEEEc---CCCceeeeeeeecCCCCcC--CCCCceEEE-Ee----------------------cC
Q 001358 899 ---NILVSSGGDAQIFVWDV---DGWGIQTCRSLQTPDGVMT--LAPSETHIQ-FH----------------------KD 947 (1092)
Q Consensus 899 ---~~l~s~s~Dg~i~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~l~-~s----------------------~d 947 (1092)
++|++++.|++|++||+ .+++... .+.++.. ..+.|.+++ |+ ++
T Consensus 640 ~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 714 (902)
T 2oaj_A 640 YSSILMVCGTDMGEVITYKILPASGGKFDV-----QLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIP 714 (902)
T ss_dssp SEEEEEEEEETTSEEEEEEEEECGGGCEEE-----EEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCC
T ss_pred CcceEEEEEecCCcEEEEEEecCCCCcEEE-----EecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCC
Confidence 89999999999999999 5555322 2222211 113566666 66 45
Q ss_pred CCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEE---E------EecCCCEEEEEeCCCcEEEEECCCCceEEeecc
Q 001358 948 QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 948 g~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l---~------fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
|.+|++ .+..++||++.++++.+.. ..|...+.++ . |+++|..|++++.||+|++|++.+++.+..+..
T Consensus 715 ~~~l~~-~~~~ir~~~~~~~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~ 792 (902)
T 2oaj_A 715 GIVLIT-GFDDIRLITLGKSKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHI 792 (902)
T ss_dssp EEEEEE-CSSEEEEECTTCCCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred eEEEEE-eccceEEEeCccccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccC
Confidence 555444 4889999999999998875 4565666666 5 789999999999999999999999999988874
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.3e-57 Score=550.45 Aligned_cols=556 Identities=11% Similarity=0.107 Sum_probs=467.3
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC----CCccceEEecccccc-eeEEEeeC--CCCcEEEEEEeCC
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDD 464 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~~~~~~l~~h~~~-v~~~~~s~--d~~~l~l~s~~~d 464 (1092)
...|.+.|.+++|||||++||+++ ++.|++||+.++ +... .+.+|... |++++|+| +++ +|++++.|
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~d 87 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDES 87 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETT
T ss_pred CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCC
Confidence 346889999999999999999998 789999999987 4443 78899999 99999999 999 89999999
Q ss_pred CcEEEEECCCC--------ceeEEEecCCcceEEEeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCce
Q 001358 465 KTIKVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGC 532 (1092)
Q Consensus 465 ~~i~vwd~~~~--------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~i 532 (1092)
+.|++||+.++ +.+..+..|..+|.+++|+ +++.+|++++.+ +.|++|| ..+....+..|...|
T Consensus 88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v 163 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD--FEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRI 163 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC--TTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCE
T ss_pred CEEEEEeCCCCcccccccccccchhhcccccEEEEEEe--CCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccE
Confidence 99999999855 6778889999999999995 477899999988 6788886 566777888899999
Q ss_pred EEEEEecCCC-EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC---ceEEEEEcCC-CCEEEEEeCCCeEEEEEC
Q 001358 533 TRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 533 ~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~s~dg~i~iwd~ 607 (1092)
.+++|+|+++ .+++++. ++.|++||..+++.+..+.+|. . .|.+++|+|+ ++++++++.||.|++||+
T Consensus 164 ~~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp EEEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred EEEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 9999999998 6888775 6779999999999999999887 6 8999999999 999999999999999999
Q ss_pred CCCceEEEEeCC--CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeeccccc----ccceeeeecCCcccccc
Q 001358 608 NKVQLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVTGA 681 (1092)
Q Consensus 608 ~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~ 681 (1092)
.+++.+..+... .+...|.+++|+ +++++++++.|+.|++||+.+++.+..+..+. ..+.++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 306 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA--------- 306 (615)
T ss_dssp TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE---------
T ss_pred CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe---------
Confidence 999999888321 223569999999 99999999999999999999988877776653 23333333
Q ss_pred cccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEe
Q 001358 682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW 761 (1092)
Q Consensus 682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw 761 (1092)
++++.+++++.++.+++|++........ ..+|...|.+++| |+ +++++.||.+++|
T Consensus 307 --------------~~~~~l~~~~~~g~i~~~d~~~~~~~~~------~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w 362 (615)
T 1pgu_A 307 --------------TGNGRIISLSLDGTLNFYELGHDEVLKT------ISGHNKGITALTV-NP---LISGSYDGRIMEW 362 (615)
T ss_dssp --------------EETTEEEEEETTSCEEEEETTEEEEEEE------ECCCSSCEEEEET-TT---TEEEETTSCEEET
T ss_pred --------------CCCCeEEEEECCCCEEEEECCCCcEEEE------EeCCCCCEEEEEe-cC---cEEECCCCeEEEE
Confidence 3688899999999999999775332211 1348899999999 88 9999999999998
Q ss_pred eecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEec
Q 001358 762 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIM 840 (1092)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~ 840 (1092)
++. ++. .+|...|.+++| +++..+++++ |+.+++||+.+++...
T Consensus 363 ~~~-------------------------~~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~--- 407 (615)
T 1pgu_A 363 SSS-------------------------SMH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS--- 407 (615)
T ss_dssp TTT-------------------------EEE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS---
T ss_pred Ech-------------------------hhc------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC---
Confidence 753 011 148899999999 5566666666 8999999998765433
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCc
Q 001358 841 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWG 919 (1092)
Q Consensus 841 ~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iwd~~~~~ 919 (1092)
.+.+++++| ++.+++++ .++.+.+|++.+++.+..+. |...+.+++|+ +++|++++. |+.|++||+.+++
T Consensus 408 ----~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~ 478 (615)
T 1pgu_A 408 ----QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE 478 (615)
T ss_dssp ----CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEE
T ss_pred ----CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcc
Confidence 678999999 88888877 88999999999999888887 88999999999 889999999 9999999999854
Q ss_pred eeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEec----------
Q 001358 920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC---------- 988 (1092)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~---------- 988 (1092)
... ....++.. .|.+++|+|+|++|++ +.|+.|++||+.+++.+..+...|...|++++|+|
T Consensus 479 ~~~----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~ 551 (615)
T 1pgu_A 479 VSF----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEI 551 (615)
T ss_dssp EEE----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CC
T ss_pred ccc----cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccccc
Confidence 221 34444443 7999999999999999 57899999999999998875444999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-ceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358 989 DCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 989 dg~~l~t~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
|+++|++++.||+|++||+.++ ..+..+. .|...|. +++|+|+ +. |++++.||.|++|++.
T Consensus 552 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~h~~~v~--~l~~s~~-~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 552 EEDLVATGSLDTNIFIYSVKRPMKIIKALN--------AHKDGVN--NLLWETP-ST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp SCCEEEEEETTSCEEEEESSCTTCCEEETT--------SSTTCEE--EEEEEET-TE-EEEEETTSCEEEEEEC
T ss_pred CCCEEEEEcCCCcEEEEECCCCceechhhh--------cCccceE--EEEEcCC-CC-eEEecCCceEEEEeee
Confidence 9999999999999999999998 5665544 2445555 6778884 56 9999999999999985
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-56 Score=554.86 Aligned_cols=597 Identities=9% Similarity=0.042 Sum_probs=436.0
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
..+|...|.+++|+|||++||+|+.||+|+||+..+++... ...|...|.+++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 55799999999999999999999999999999988764332 235788999999999 77 799999999999999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCce-----------EEecCCCCceEEEEEecC
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN 540 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~i~~~~~s~d 540 (1092)
+.+++++..+. |...|++++|++ ++.+|++|+.||.|++||+++.... .....|..+|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999998886 778999999954 6789999999999999999876643 123557789999999996
Q ss_pred C-CEEEEEecCCCCceeEEEEeCCCCeEEEEEeec---------------cccCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001358 541 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 541 g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
+ ..+++++. ++.| +||+.+++.+..+..+ ..|...|.+++|+|++++|++++.||+|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 66777654 6779 9999999999888776 112367999999999999999999999999
Q ss_pred EECCCCceEEEEeC-----CC-----------CCCCCceEEEcc----CC-CEEEEEeCC-----CeEEEEECCC-----
Q 001358 605 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFNK----NG-TLLAVIANE-----NRIKILETPE----- 653 (1092)
Q Consensus 605 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s~----~~-~~l~~~~~d-----g~i~iw~~~~----- 653 (1092)
||+.+++.+..... +. +...|.+++|++ ++ .++++++.+ +.+.+|+...
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 99999988764221 21 123588999964 43 567777665 3788888431
Q ss_pred -------------CCeeeecc-cccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeecc
Q 001358 654 -------------SNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1092)
Q Consensus 654 -------------~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~ 719 (1092)
.+....+. .+...+..+.+.+.......+ ..++..+++++.|+.+++|++..+.
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g------------~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAG------------CHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHH------------TBSCSEEEEEETTSCEEEEETTTCC
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCC------------CCCceeEEEEcCCCcEEEEECCCCC
Confidence 11122221 233444444443311100000 1345578888899999999974321
Q ss_pred Cccc-eecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCC
Q 001358 720 PSEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 798 (1092)
Q Consensus 720 ~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 798 (1092)
.... .........|...|.++++++... .+|+..... . +... ..+
T Consensus 386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~------------------~-~~~~--~~l-- 431 (902)
T 2oaj_A 386 FTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSA------------------A-QNKD--YLL-- 431 (902)
T ss_dssp EECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHT------------------T-BCCC--CSC--
T ss_pred cccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhc------------------c-cCCC--Ccc--
Confidence 1110 000111223557888888865322 224321100 0 0000 012
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee--EEe----c-----CCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001358 799 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTI----M-----PPSPTATSLAFNPHDNNVIAIGMDDS 866 (1092)
Q Consensus 799 ~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~--~~~----~-----~~~~~i~~l~~s~~d~~~lasg~~dg 866 (1092)
.+|...+.+++|+|++++|++++ |++|++||+.++... ..+ . +|...|.+++|+| |+++||+|+.||
T Consensus 432 ~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~Dg 510 (902)
T 2oaj_A 432 KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETG 510 (902)
T ss_dssp CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTS
T ss_pred cCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCc
Confidence 24777888899999999999998 899999999877421 111 1 7888999999999 999999999999
Q ss_pred eEEEEEcCCc---------------------------------------------eeeEeeccccCCeEEEEEcCCCCEE
Q 001358 867 TILIYNARSS---------------------------------------------EVISKLEGHSKRVTGLVFSDALNIL 901 (1092)
Q Consensus 867 ~v~iwd~~~~---------------------------------------------~~~~~l~~h~~~V~~l~~spdg~~l 901 (1092)
+|+||++.++ +++..+.+|.+.|++++||||| +|
T Consensus 511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l 589 (902)
T 2oaj_A 511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV 589 (902)
T ss_dssp CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EE
Confidence 9999999876 2467888999999999999999 99
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeecCC-CCcCCCCCceEEEEe-----cCC---CEEEE-EeCCcEEEEEc---CCce
Q 001358 902 VSSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLL-VHETHLAIYEA---EELT 968 (1092)
Q Consensus 902 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~s-----~dg---~~la~-~~d~~v~lwd~---~~~~ 968 (1092)
|+|+.|++|+|||+.++.......+.... +|.. .|++++|| ||| ++|++ +.|++|++||+ .+|+
T Consensus 590 Asgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 590 GIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred EEEeCCCcEEEEECCCCeEEEEeehhHhcccccc---ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 99999999999999876543221223343 5554 89999999 886 78888 68899999999 7888
Q ss_pred eeeeeccCC-----CcCEEEEE-Ee----------------------cCCCEEEEEeCCCcEEEEECCCCceEEeecccc
Q 001358 969 CLKQWFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 969 ~~~~~~~~h-----~~~v~~l~-fs----------------------~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
+... +.+| .++|..++ |+ ++|..|+++ +..|+||++.+++.......
T Consensus 667 ~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~-- 741 (902)
T 2oaj_A 667 FDVQ-LMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFK-- 741 (902)
T ss_dssp EEEE-EEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECS--
T ss_pred EEEE-ecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcc--
Confidence 7766 3344 47787777 76 455544443 77899999999988765531
Q ss_pred ccCCCCccCcccceE-EE------ECCCCCCEEEEEeCCCcEEEEecCCCCCc
Q 001358 1021 YLRPTTSCLHVYPHA-IA------AHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1066 (1092)
Q Consensus 1021 ~~~~~~~~~~v~~~~-~~------~~p~~~~~l~~~~~dg~v~~w~~~~~~~~ 1066 (1092)
|...+..++ +. +++ ++..|++++.||+|++|++++.+.-
T Consensus 742 ------~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~ 787 (902)
T 2oaj_A 742 ------YPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQ 787 (902)
T ss_dssp ------SCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEE
T ss_pred ------cceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHH
Confidence 111122221 24 566 4789999999999999999877643
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.7e-48 Score=484.15 Aligned_cols=559 Identities=14% Similarity=0.174 Sum_probs=428.4
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
...+.+.+|++.|++++|||||+ +||+|+.||.|+|||+.+++.+.. +.+|...|.+++|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEE
Confidence 34578899999999999999998 689999999999999999887764 6689999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEec
Q 001358 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~ 483 (1092)
+|+|++||+++.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ .|++++.|+.|++||+.++ .....+.+
T Consensus 64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence 9999999999999999999999987554 6788999999999999999 7999999999999999987 67788899
Q ss_pred CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEec--CCCEEEEEecCCCCceeEEEE
Q 001358 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iw 560 (1092)
|...|.+++|++. ++..+++++.||.|++||+........+..+. ..+..++|+| ++.++++++. ++.|++|
T Consensus 139 ~~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~ 213 (814)
T 3mkq_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (814)
T ss_dssp CSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEE
T ss_pred CCCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEE
Confidence 9999999999652 56799999999999999998888777666554 7899999999 9999999875 6679999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCE-EEE
Q 001358 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL-LAV 639 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~~ 639 (1092)
|..+++.+..+.+|. ..|.+++|+|+++++++++.||.|++||+.+++.+..+..+. ..+.+++|+|++.. +++
T Consensus 214 d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~ 288 (814)
T 3mkq_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA 288 (814)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS--SSEEEEEECTTCGGGEEE
T ss_pred ECCCCcEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC--CcEEEEEEccCCCceEEE
Confidence 999999999999887 899999999999999999999999999999999999887664 46899999999873 244
Q ss_pred EeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccc--------
Q 001358 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE-------- 711 (1092)
Q Consensus 640 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~-------- 711 (1092)
++.++.+.+|+....... +.+ +|+++.+++++.+....
T Consensus 289 ~~~~~~~~~~~~~~~~~~------------~~~----------------------~~~g~~~~~~~~~~~~~~~~~~~~~ 334 (814)
T 3mkq_A 289 SGFDNGFTVLSLGNDEPT------------LSL----------------------DPVGKLVWSGGKNAAASDIFTAVIR 334 (814)
T ss_dssp EEETTEEEEEECSCCSCC------------EEE----------------------CSSSEEEEECCTTSCTTCEEEEECC
T ss_pred EEeCCCEEEEEcCCCCce------------eEE----------------------CCCCCEEEECcccccceeeeeeecc
Confidence 445677889987655322 222 24455555444333211
Q ss_pred -eeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCc
Q 001358 712 -VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 790 (1092)
Q Consensus 712 -~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1092)
.|++............. ..+...+.+++|+|+|+.+++++ +|.+.+|++.....
T Consensus 335 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~---------------------- 389 (814)
T 3mkq_A 335 GNEEVEQDEPLSLQTKEL--GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN---------------------- 389 (814)
T ss_dssp SCCCCCSSSCBCCCCEEE--CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE----------------------
T ss_pred cccccccCccceeeeecC--CCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc----------------------
Confidence 12222111111111111 22556788999999999888887 89999998532110
Q ss_pred eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCC---CEEEEEeCCC
Q 001358 791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN---NVIAIGMDDS 866 (1092)
Q Consensus 791 ~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~---~~lasg~~dg 866 (1092)
.+...+.+++|+|+++++++++ ++.+++|+. +.+|...+.+++|+| ++ .+|++++.|+
T Consensus 390 ---------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~-dg~~~~~l~~~~~d~ 451 (814)
T 3mkq_A 390 ---------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAI-DRLFSGALLGVKSDG 451 (814)
T ss_dssp ---------EEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCC-CEEECSSSEEEEETT
T ss_pred ---------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCc-cceecceEEEEecCC
Confidence 1345678999999999999997 699999963 345777889999999 77 5888899999
Q ss_pred eEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE------eCCCcEEEEEcCC---------------Cceeeeee
Q 001358 867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS------GGDAQIFVWDVDG---------------WGIQTCRS 925 (1092)
Q Consensus 867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~------s~Dg~i~iwd~~~---------------~~~~~~~~ 925 (1092)
.|++||+.+++.+..+.+|.. .++|+|||++|+++ +.++.+.+|--.. +.......
T Consensus 452 ~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (814)
T 3mkq_A 452 FVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDV 528 (814)
T ss_dssp EEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEE
T ss_pred EEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheee
Confidence 999999999999999998875 89999999999999 6666555554210 00000111
Q ss_pred eecCCCCcCCCCCceEEEEecCCCEEEEEe-CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEE
Q 001358 926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus 926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~v 1004 (1092)
+.... ..+.+..|. +..++... .+.+..+- .++... .......+..+.|.+++..++....++.+..
T Consensus 529 ~~~~~------~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 596 (814)
T 3mkq_A 529 LYELS------ESITSGKWV--GDVFIFTTATNRLNYFV--GGKTYN--LAHYTKEMYLLGYLARDNKVYLADREVHVYG 596 (814)
T ss_dssp EEEEC------SCCSEEEEE--TTEEEEECTTSEEEEEE--TTEEEE--EEECSSCCEEEEEEGGGTEEEEECTTCCEEE
T ss_pred eeEec------cEEEeeEEe--CCEEEEEcCCCeEEEEe--CCeeEE--EEECCccEEEEEEEecCCEEEEEcCCCCEEE
Confidence 11111 135556664 34433332 34444432 222211 1123456777778899999999999999999
Q ss_pred EECCCC
Q 001358 1005 HEASNL 1010 (1092)
Q Consensus 1005 wd~~~~ 1010 (1092)
|++...
T Consensus 597 ~~l~~~ 602 (814)
T 3mkq_A 597 YEISLE 602 (814)
T ss_dssp EECCHH
T ss_pred EEECcH
Confidence 998654
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.2e-46 Score=470.31 Aligned_cols=480 Identities=15% Similarity=0.181 Sum_probs=392.7
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.+++|+|||++||+++.||.|+|||+.+++.+. .+.+|.++|.+++|+|+++ +|++++.||.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 77899999999999999999999999999999999986554 6779999999999999999 899999999999999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEec-CCCEEEEEec
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~ 549 (1092)
+.+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+++. .....+..+...+.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999955 6689999999999999999887 45567788899999999999 8889999876
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
++.|++||+.++.....+..+. ...+.+++|+| ++.++++++.||.|++||+.+++.+..+..+. ..|.+
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~ 233 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEE
Confidence 6679999999888877777654 47899999999 99999999999999999999999998887664 46899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccc-ceeecc
Q 001358 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP-EISVEA 706 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~-l~s~~~ 706 (1092)
++|+|+++++++++.||.|++|+..+++....+..+...+.+++++ |++.. +++.+.
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----------------------~~~~~~~~~~~~ 291 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH----------------------PTGRKNYIASGF 291 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEEC----------------------TTCGGGEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEc----------------------cCCCceEEEEEe
Confidence 9999999999999999999999999999999999999999999987 45543 355666
Q ss_pred ccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCee-EEeeecCCccccCcccccccCCccccC
Q 001358 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQP 785 (1092)
Q Consensus 707 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i-~lw~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1092)
++.+.+|++... ...+.++|+|+.+++++.+... .++.... ...|+.
T Consensus 292 ~~~~~~~~~~~~------------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 339 (814)
T 3mkq_A 292 DNGFTVLSLGND------------------EPTLSLDPVGKLVWSGGKNAAASDIFTAVI--------------RGNEEV 339 (814)
T ss_dssp TTEEEEEECSCC------------------SCCEEECSSSEEEEECCTTSCTTCEEEEEC--------------CSCCCC
T ss_pred CCCEEEEEcCCC------------------CceeEECCCCCEEEECcccccceeeeeeec--------------cccccc
Confidence 777888875421 2346788999988877665321 1111000 011222
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001358 786 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865 (1092)
Q Consensus 786 ~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1092)
..+............+...+.+++|+|+|+++++++++.+.+|++....... .+.+.+++|+| +++++|+++.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-dg~~la~~~~~ 413 (814)
T 3mkq_A 340 EQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-DSNSYALIDET 413 (814)
T ss_dssp CSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-TSSCEEEECTT
T ss_pred ccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-CCCeEEEEeCC
Confidence 2222221111111136677899999999999999999999999987654432 35678999999 89999999999
Q ss_pred CeEEEEEcCCceeeEeeccccCCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEE
Q 001358 866 STILIYNARSSEVISKLEGHSKRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 942 (1092)
Q Consensus 866 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg---~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l 942 (1092)
|.|++|+ .+.+|...|.+++|+||+ .+|++++.|+.|++||+.+++ .+.....+. ..+
T Consensus 414 g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~~------~~v 474 (814)
T 3mkq_A 414 GQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVNA------KDV 474 (814)
T ss_dssp CCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSCE------EEE
T ss_pred CcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecCC------CEE
Confidence 9999995 445688889999999998 689999999999999999865 333333332 389
Q ss_pred EEecCCCEEEEE------eCCcEEEEEcC
Q 001358 943 QFHKDQTRFLLV------HETHLAIYEAE 965 (1092)
Q Consensus 943 ~~s~dg~~la~~------~d~~v~lwd~~ 965 (1092)
+|+|||++|+++ .++.+.++...
T Consensus 475 ~~s~dg~~la~~~~~~~~~~~~~~~~~~~ 503 (814)
T 3mkq_A 475 IWSDNGELVMIVNTNSNGDEASGYTLLFN 503 (814)
T ss_dssp EECTTSSEEEEEECCCSSCSCSEEEEEEC
T ss_pred EEcCCCCEEEEEEcCcccCCceEEEEEec
Confidence 999999999997 66677766543
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-45 Score=421.86 Aligned_cols=288 Identities=22% Similarity=0.368 Sum_probs=267.3
Q ss_pred EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
..|.+|.+.|++++|+|+++ ++++|+.|++|+|||+.+++.... +.+|...|.+++|+|+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~ 161 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHS 161 (410)
T ss_dssp CEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTT
T ss_pred EeecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCC
Confidence 45789999999999999998 799999999999999999987765 7789999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
|++||+|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|++|++||+.++.++..+.+|...
T Consensus 162 ~~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~ 236 (410)
T 1vyh_C 162 GKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236 (410)
T ss_dssp SSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence 9999999999999999999886554 6789999999999999999 8999999999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecC--------------------CCEEEEE
Q 001358 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--------------------GRRLFSC 547 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d--------------------g~~l~~~ 547 (1092)
|.+++++ +++.+|++++.||+|++||+.+......+..|...|.+++|+|+ |.+++++
T Consensus 237 v~~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 237 VRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp EEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred EEEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 9999885 57789999999999999999999999999999999999999996 6689998
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+. ++.|++||+.++..+..+.+|. ..|.+++|+|++++|++|+.||+|++||+.+++.+..+..|. ..|.+
T Consensus 315 s~----D~~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~--~~v~~ 385 (410)
T 1vyh_C 315 SR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVTS 385 (410)
T ss_dssp ET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEEE
T ss_pred eC----CCeEEEEECCCCceEEEEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC--CcEEE
Confidence 86 6679999999999999999988 899999999999999999999999999999999999988664 46999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEC
Q 001358 628 ICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
++|+|++.+|++|+.||.|++|+.
T Consensus 386 l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999985
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.4e-40 Score=364.02 Aligned_cols=296 Identities=19% Similarity=0.269 Sum_probs=266.6
Q ss_pred CcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEE
Q 001358 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
+....++|.+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~ 103 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTC 103 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEE
Confidence 3456789999999999999999998 799999999999999999987764 56799999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCC-ccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001358 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~ 481 (1092)
+|+|+|++||+|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+
T Consensus 104 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEE
Confidence 9999999999999999999999987643 233446789999999999999875 889999999999999999999999
Q ss_pred ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEe
Q 001358 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1092)
.+|...|.+++|++ ++.++++|+.||.|++||+++......+..|...|.+++|+|++++|++++. ++.|++||
T Consensus 181 ~~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd 254 (340)
T 1got_B 181 TGHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFD 254 (340)
T ss_dssp CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEE
Confidence 99999999999965 6689999999999999999999999999999999999999999999999986 66799999
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001358 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
+.+++.+..+.... ....|.+++|+|+++++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+|.+|++++
T Consensus 255 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 255 LRADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp TTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSCEEEEE
T ss_pred CCCCcEEEEEccCC-cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCEEEEEc
Confidence 99998877765322 23579999999999999999999999999999999999888664 4699999999999999999
Q ss_pred CCCeEEEEE
Q 001358 642 NENRIKILE 650 (1092)
Q Consensus 642 ~dg~i~iw~ 650 (1092)
.|+.|++||
T Consensus 332 ~D~~i~iWd 340 (340)
T 1got_B 332 WDSFLKIWN 340 (340)
T ss_dssp TTSCEEEEC
T ss_pred CCccEEecC
Confidence 999999996
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-39 Score=364.35 Aligned_cols=298 Identities=17% Similarity=0.243 Sum_probs=268.4
Q ss_pred cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
....++|.+|++.|++++|+||++ +||+|+.|++|+|||..+++.... +..|...|.+++
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~ 113 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACA 113 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEE
Confidence 456789999999999999999998 799999999999999999887654 556889999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCC---ccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358 404 WSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
|+|+|++||+|+.|+.+++|++..... ......+.+|.+.|.+++|+|++. .|++++.|++|++||+++++.+..
T Consensus 114 ~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~ 191 (354)
T 2pbi_B 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQS 191 (354)
T ss_dssp ECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEE
Confidence 999999999999999999999875421 223446778999999999999999 799999999999999999999999
Q ss_pred EecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEE
Q 001358 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
+.+|...|.++++++.+++.+|++|+.||+|++||++++.....+..|...|.+++|+|+++++++++. ++.|++|
T Consensus 192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lw 267 (354)
T 2pbi_B 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLY 267 (354)
T ss_dssp EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEE
T ss_pred EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEE
Confidence 999999999999988888899999999999999999999999999999999999999999999999986 6679999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001358 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1092)
|+++++.+..+..+. ....+.+++|+|++.++++|+.|++|++||+.+++.+..+..|. ..|.+++|+|+|++|+++
T Consensus 268 d~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~--~~v~~l~~spdg~~l~sg 344 (354)
T 2pbi_B 268 DLRADREVAIYSKES-IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE--NRVSTLRVSPDGTAFCSG 344 (354)
T ss_dssp ETTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSCEEEE
T ss_pred ECCCCcEEEEEcCCC-cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC--CcEEEEEECCCCCEEEEE
Confidence 999998877766443 23478999999999999999999999999999999998887654 469999999999999999
Q ss_pred eCCCeEEEEE
Q 001358 641 ANENRIKILE 650 (1092)
Q Consensus 641 ~~dg~i~iw~ 650 (1092)
+.|+.|++|+
T Consensus 345 s~D~~v~vW~ 354 (354)
T 2pbi_B 345 SWDHTLRVWA 354 (354)
T ss_dssp ETTSEEEEEC
T ss_pred cCCCCEEecC
Confidence 9999999995
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.4e-40 Score=361.40 Aligned_cols=294 Identities=15% Similarity=0.234 Sum_probs=265.4
Q ss_pred ceeEecccCCCCceEEeecCC----CceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPV----QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spd----g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~ 400 (1092)
.....+++|.+.|++++|+|+ ++ +|++|+.|++|+|||+.+++.... ..+.+|...|.
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v~ 84 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGVV 84 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEE
T ss_pred heeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCEE
Confidence 445778899999999999985 44 799999999999999987654321 12779999999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++++.|+.|++||+++++....
T Consensus 85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEE
Confidence 99999999999999999999999999986554 6778889999999999999 899999999999999999999999
Q ss_pred EecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEE
Q 001358 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
+..|...|.+++|+ +++++|++++.||.|++||+.+++....+..+..+|.+++|+|++++|++++. ++.|++|
T Consensus 160 ~~~~~~~v~~~~~s--pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iw 233 (321)
T 3ow8_A 160 LDTRGKFILSIAYS--PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIY 233 (321)
T ss_dssp EECSSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEE
T ss_pred ecCCCceEEEEEEC--CCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 99999999999995 47789999999999999999999888899999999999999999999999976 6679999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001358 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1092)
|+.+++....+.+|. ..|.+++|+|++.+|++++.|++|++||+.+++++..+..+. ..|.+++|+|++++|+++
T Consensus 234 d~~~~~~~~~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 234 DVQHANLAGTLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp ETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEE
T ss_pred ECCCcceeEEEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEE
Confidence 999999999999888 899999999999999999999999999999999999987654 469999999999999999
Q ss_pred eCCCeEEEEECC
Q 001358 641 ANENRIKILETP 652 (1092)
Q Consensus 641 ~~dg~i~iw~~~ 652 (1092)
+.||.|++||.+
T Consensus 309 ~~d~~i~vwd~p 320 (321)
T 3ow8_A 309 GDDQEIHIYDCP 320 (321)
T ss_dssp ETTCCEEEEECC
T ss_pred eCCCeEEEEeCC
Confidence 999999999964
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.5e-39 Score=352.72 Aligned_cols=293 Identities=18% Similarity=0.309 Sum_probs=257.4
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
...++|.+|++.|++++|+|||+ +|++|+.||+|+|||+.++..+.. +.+|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 45678999999999999999998 789999999999999999887764 6679999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEec
Q 001358 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~ 483 (1092)
+|++++|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++||++++ .....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999987554 6889999999999999999 8999999999999999987 45578899
Q ss_pred CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCceEEEEEec--CCCEEEEEecCCCCceeEEEE
Q 001358 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iw 560 (1092)
|...|.+++|+|. ++.+|++|+.||+|++||+........+. .+...+..+.|+| ++.+|++++. ++.|++|
T Consensus 139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 9999999999763 45799999999999999998877666554 4556888999987 7789999986 6779999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC--EEE
Q 001358 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA 638 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~ 638 (1092)
|+.+++++..+.+|. ..|.+++|+|++++|++|+.||+|++||..+++.+..+..+. ..+.+++|+|++. +++
T Consensus 214 d~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEE
T ss_pred eCCCCccceeeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEE
Confidence 999999999999988 899999999999999999999999999999999999987653 4588999999875 577
Q ss_pred EEeCCCeEEEEECCC
Q 001358 639 VIANENRIKILETPE 653 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~ 653 (1092)
+++.| .+.+|++..
T Consensus 289 sg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 289 SGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEETT-EEEEEECC-
T ss_pred EecCC-ceEEEEecc
Confidence 77655 567777654
No 18
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.3e-39 Score=352.70 Aligned_cols=301 Identities=19% Similarity=0.239 Sum_probs=259.5
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+..+|.+|++.|++++|+|++..+|++|+.|++|++||+.+....... ....+.+|...|.+++|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~ 73 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTL 73 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEE
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEE
Confidence 3457899999999999999987448999999999999998754432211 11237799999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001358 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
+|||++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||+. ++++..+.+|
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h 147 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGH 147 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCC
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEecc
Confidence 9999999999999999999999986554 6889999999999999999 89999999999999975 6678889999
Q ss_pred CcceEEEeecccC----CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEE
Q 001358 485 GAPVYSLCPHAKE----NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 485 ~~~v~~i~~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
...|.++.+.+.. ++.++++++.|+.|++||++.......+..|...|.+++|+|+|++|++++. ++.|++|
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iw 223 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLW 223 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEE
Confidence 9999999997643 4568999999999999999998888889999999999999999999999986 6789999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC------CCCCCceEEEccCC
Q 001358 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNG 634 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~~ 634 (1092)
|+.+++.+..+..+ ..|.+++|+|++.++++++.+ .+++|++..+..+..+..+. +...+.+++|+|+|
T Consensus 224 d~~~~~~~~~~~~~----~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 298 (319)
T 3frx_A 224 NLAAKKAMYTLSAQ----DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298 (319)
T ss_dssp ETTTTEEEEEEECC----SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS
T ss_pred ECCCCcEEEEecCC----CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC
Confidence 99999999888764 479999999999988887755 59999999888777765331 22357799999999
Q ss_pred CEEEEEeCCCeEEEEECCCC
Q 001358 635 TLLAVIANENRIKILETPES 654 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~ 654 (1092)
++|++++.||.|++|++.++
T Consensus 299 ~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 299 QTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SEEEEEETTSCEEEEEEEEC
T ss_pred CEEEEeecCceEEEEEEeec
Confidence 99999999999999998653
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.9e-39 Score=367.11 Aligned_cols=306 Identities=17% Similarity=0.256 Sum_probs=265.7
Q ss_pred cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
..+.++|.||++.|++++|+|+|+ +|++|+.|++|+|||+.+++.... +.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence 456789999999999999999998 699999999999999999887654 667999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCC----ccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358 404 WSPDGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
|+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999976421 1222357799999999999998654 69999999999999999999998
Q ss_pred EE-----ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEecCCCEEEEEecCCCC
Q 001358 480 SF-----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 480 ~~-----~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
.+ .+|...|.++++++. ++.+|++|+.||+|++||++. ......+..|...|.+++|+|++++|++++.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---- 269 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD---- 269 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred EeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence 87 679999999998643 567999999999999999984 4667788899999999999999999999986
Q ss_pred ceeEEEEeCCCCeEEEEEeecccc----CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeC--CCCCCCCce
Q 001358 554 ESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA--GGGLPENPR 627 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~ 627 (1092)
++.|++||+.+++.+..+..+... ...|.+++|+|+++++++|+.||.|++||..+++.+..+.. .++...|.+
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 667999999999998888765411 13488999999999999999999999999999998877732 234567999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCC
Q 001358 628 ICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
++|+|+|++|++|+.|+.|++|++...+
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999999999987653
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-38 Score=362.69 Aligned_cols=286 Identities=18% Similarity=0.287 Sum_probs=266.9
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|..+|++++|+|++++|++|+.|++|+|||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 66899999999999999999999999999999999987665 7889999999999999999 899999999999999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+.+++++..+.+|...|.+++|++ ++.+|++|+.|++|++||+.++.....+..|...+.++.++|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 999999999999999999999965 6679999999999999999999999999999999999999999999999986
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC--------------------CCEEEEEeCCCeEEEEECCCCc
Q 001358 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--------------------KDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
++.|++||+.+++....+.+|. ..|.+++|+|+ +.++++|+.|++|++||+.++.
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred --CCeEEEEECCCCceeeEecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 6679999999999999998887 89999999996 6789999999999999999999
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeec
Q 001358 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1092)
.+..+..|. ..|.+++|+|++++|++++.||.|++||..+++.+..+.+|...|.+++|+
T Consensus 330 ~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------ 389 (410)
T 1vyh_C 330 CLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH------------------ 389 (410)
T ss_dssp EEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC------------------
T ss_pred eEEEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc------------------
Confidence 999988664 468999999999999999999999999999999999999999999999996
Q ss_pred CCCCCCcccceeeccccccceece
Q 001358 692 EDPKEDVKPEISVEAENKSEVEKP 715 (1092)
Q Consensus 692 ~~~s~d~~~l~s~~~d~~i~~w~~ 715 (1092)
|++.++++++.|++|++|+.
T Consensus 390 ----~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 390 ----KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ----SSSSCEEEEETTSEEEEEC-
T ss_pred ----CCCCEEEEEeCCCcEEEEeC
Confidence 67889999999999999985
No 21
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.3e-38 Score=347.89 Aligned_cols=286 Identities=14% Similarity=0.182 Sum_probs=262.9
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.+++|+||+++|++|+.|++|++||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 77999999999999999999999999999999999886554 6778999999999999999 899999999999999
Q ss_pred CCCC----ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEE
Q 001358 472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 472 ~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
+.++ +....+.+|...|.++.|.+. + .+++++.|++|++||+.++.....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9876 356778899999999999653 3 59999999999999999999888999999999999999999999999
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+. ++.|++||+.++..+..+.+|. ..|.+++|+|+++++++|+.||+|++||+.+++.+..+..+.....|.+
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 86 6679999999999999999888 8999999999999999999999999999999988888765555456899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
++|+|+|+++++++.|+.|++||..++..+..+.+|...|.+++++ |++.++++++.|
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~s~s~D 333 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD 333 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc----------------------CCCCEEEEEcCC
Confidence 9999999999999999999999999999999999999999999996 789999999999
Q ss_pred cccceec
Q 001358 708 NKSEVEK 714 (1092)
Q Consensus 708 ~~i~~w~ 714 (1092)
++|++|+
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-38 Score=350.55 Aligned_cols=306 Identities=15% Similarity=0.244 Sum_probs=250.5
Q ss_pred ceeEecccCCC-CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 325 TVAQTLIEGSS-SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 325 ~~~~~l~~h~~-~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.++++|.+|.+ .|++++|+|||+ +||+|+.|++|+|||+.++..... .....+|...|.+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~ 68 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVA 68 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEE
T ss_pred EEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEE
Confidence 56788999988 999999999998 699999999999999988754321 112468999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc---eeEE
Q 001358 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYS 480 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~---~~~~ 480 (1092)
|+|+|++||+|+.|++|++||+.++.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++. ++..
T Consensus 69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 69 WSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 999999999999999999999987642 23447889999999999999999 89999999999999998763 4667
Q ss_pred EecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
+.+|...|.+++|++ ++.+|++++.|++|++||..... ....+..|...|.+++|+|+|++|++++. ++.|+
T Consensus 146 ~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~ 219 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVR 219 (345)
T ss_dssp ECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEE
T ss_pred ecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEE
Confidence 889999999999965 66799999999999999998765 34577889999999999999999999986 66799
Q ss_pred EEeCCCC---------------eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-------EEEE
Q 001358 559 EWNESEG---------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL-------LTTI 616 (1092)
Q Consensus 559 iwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~-------~~~~ 616 (1092)
+||.... .++..+.+. +...|.+++|+|++..+++++.|+.|++|+...+.. ....
T Consensus 220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 297 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH 297 (345)
T ss_dssp EEEEECTTCTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred EeccccCCCCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence 9996321 233344442 247899999999999999999999999999875431 1111
Q ss_pred eCCCCCCCCceEEEccCC-CEEEEEeCCCeEEEEECCCCCeee
Q 001358 617 DAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD 658 (1092)
Q Consensus 617 ~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1092)
...++...|.+++|+|++ .+|++++.||.|++|+..+++...
T Consensus 298 ~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp ETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred ecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 122445679999999987 599999999999999998876543
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.2e-39 Score=360.14 Aligned_cols=320 Identities=16% Similarity=0.206 Sum_probs=230.7
Q ss_pred ceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCC
Q 001358 701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 780 (1092)
Q Consensus 701 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~ 780 (1092)
++.++.+.....|++....+ ..|...|.+++|+|||++|++++.|. +++||- .+
T Consensus 19 ~~~~~g~~~~~~w~~p~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~---------------~v 72 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVTAP----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG---------------SI 72 (357)
T ss_dssp -------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------EE
T ss_pred EEecCCCccccccCCCCCCc----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------eE
Confidence 34455567778888653322 24888999999999999999998742 233331 23
Q ss_pred ccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeE----EecCCCCCeEEEEEcCCCC
Q 001358 781 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLAFNPHDN 856 (1092)
Q Consensus 781 ~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~d~ 856 (1092)
++|+..++...........+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++|+| ++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg 151 (357)
T 4g56_B 73 WVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DG 151 (357)
T ss_dssp EEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SS
T ss_pred EEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CC
Confidence 334443333222211112247889999999999988877778999999999877543 3457899999999999 89
Q ss_pred CEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001358 857 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++. ++++++.||+|++||+.+++.... +. ...+.
T Consensus 152 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--~~-~~~~~-- 226 (357)
T 4g56_B 152 TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--ID-FCASD-- 226 (357)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB--CC-CTTCC--
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee--ee-ecccc--
Confidence 9999999999999999999999999999999999999999875 789999999999999988653321 11 11122
Q ss_pred CCCceEEEEecCC-CEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCce
Q 001358 936 APSETHIQFHKDQ-TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 936 ~~~v~~l~~s~dg-~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~s~Dg~i~vwd~~~~~~ 1012 (1092)
..+.+++|+|++ .+|++ +.|+.|++||+.+++++.. +.+|...|++++|+|++ ++|++|+.||+|+|||+.+++.
T Consensus 227 -~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 227 -TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp -SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred -ccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 368999999985 56777 5789999999999998876 56899999999999997 5899999999999999999987
Q ss_pred EEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001358 1013 QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
+..+. |...|. +++|+|.|+.+|++++.||+|++|+++..+.
T Consensus 305 ~~~~~---------H~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 305 FRDLS---------HRDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEECC---------CSSCEE--EEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred eEECC---------CCCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 75432 455565 7889997789999999999999999986654
No 24
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.1e-38 Score=344.46 Aligned_cols=288 Identities=16% Similarity=0.245 Sum_probs=263.3
Q ss_pred ecCCCCcEEEEEECCC----CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcE
Q 001358 392 VRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
+.+|.+.|.+++|+|+ +++|++|+.|++|+|||+.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 5689999999999985 67999999999999999987643 22336889999999999999999 89999999999
Q ss_pred EEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEE
Q 001358 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
++||+.+++.+..+..|...+.+++|+ +++++|++++.||.|++|++++......+..+...+.+++|+|+|++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFS--PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEEC--TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEEC--CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 999999999999999999999999995 477899999999999999999999988888888999999999999999999
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++++.|++|++||+.+++....+..|. ..|.+
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~--~~v~~ 253 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA--SWVLN 253 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS--SCEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC--CceEE
Confidence 86 5679999999999999999887 899999999999999999999999999999999998887654 46899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+ |+++.+++++.|
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s----------------------~~g~~l~s~~~d 311 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN----------------------GNGSKIVSVGDD 311 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETT
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEEC----------------------CCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999996 788899999999
Q ss_pred cccceece
Q 001358 708 NKSEVEKP 715 (1092)
Q Consensus 708 ~~i~~w~~ 715 (1092)
++|++||.
T Consensus 312 ~~i~vwd~ 319 (321)
T 3ow8_A 312 QEIHIYDC 319 (321)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEeC
Confidence 99999995
No 25
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.8e-37 Score=338.81 Aligned_cols=295 Identities=18% Similarity=0.310 Sum_probs=261.4
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
....++.+|.+.|++++|+|+|+ +|++|+.|+.|+||++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 45678899999999999999998 689999999999999999887654 6789999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001358 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
+|++++|++++.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++||+.+++.+..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999986554 6789999999999999999 8999999999999999999999999999
Q ss_pred CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
..+|.+++|++ ++.++++++.||.|++||+.+.+....+. .+...+..++|+|+++++++++. ++.|++||+.
T Consensus 149 ~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 99999999954 67899999999999999999888766554 45567999999999999999986 6679999999
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe--
Q 001358 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-- 641 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-- 641 (1092)
+++.+..+.+|......+......+++.++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+++++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--DVVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC--CcEEEEeecCcCCceEEEEcc
Confidence 999999998887333334444455778899999999999999999999999988664 4689999999999999997
Q ss_pred CCCeEEEEECC
Q 001358 642 NENRIKILETP 652 (1092)
Q Consensus 642 ~dg~i~iw~~~ 652 (1092)
.|+.|++|+..
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999864
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.4e-38 Score=352.77 Aligned_cols=295 Identities=13% Similarity=0.154 Sum_probs=239.2
Q ss_pred cccCCCCceEEeecCCCceEEEEEcC------cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 330 LIEGSSSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~------d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
..+|+..|++++|||||+ +||+|+. |++|++|+..++........ ...+|...|.+++
T Consensus 38 p~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~V~~~~ 101 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---------------AGVQTEAGVTDVA 101 (357)
T ss_dssp --CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCS---------------EEEECSSCEEEEE
T ss_pred cccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEec---------------ccCCCCCCEEEEE
Confidence 357999999999999998 6889887 67899999888765432111 1446899999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCCccc-eEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001358 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~-~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
|+|++++| +++.||+|+|||+.+++.... .....+|...|++++|+|+++ +|++|+.|++|++||+.+++.+..+.
T Consensus 102 ~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~ 178 (357)
T 4g56_B 102 WVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYN 178 (357)
T ss_dssp EETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 99998655 567899999999998865432 224558999999999999999 89999999999999999999999999
Q ss_pred cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEecCC-CEEEEEecCCCCceeEEE
Q 001358 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANG-RRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~i 559 (1092)
+|...|++++|++..+ .++++++.||+|++||+++.+....+. .+...+.+++|+|++ .++++++. ++.|++
T Consensus 179 ~h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~ 253 (357)
T 4g56_B 179 AHSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSL 253 (357)
T ss_dssp CCSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEE
T ss_pred CCCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeE
Confidence 9999999999976533 478999999999999999887765443 456679999999985 56777765 567999
Q ss_pred EeCCCCeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEE
Q 001358 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLL 637 (1092)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l 637 (1092)
||+.+++.+..+.+|. ..|.+++|+|++ ++|++|+.|++|+|||+++++.+..+. +...|.+++|+| ++.+|
T Consensus 254 wd~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~---H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 254 VNIKNPDSAQTSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS---HRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp EESSCGGGCEEECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC---CSSCEEEEEECSSSTTEE
T ss_pred EECCCCcEeEEEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC---CCCCEEEEEEeCCCCCEE
Confidence 9999999999999888 899999999987 578899999999999999998877652 345799999998 89999
Q ss_pred EEEeCCCeEEEEECCCC
Q 001358 638 AVIANENRIKILETPES 654 (1092)
Q Consensus 638 ~~~~~dg~i~iw~~~~~ 654 (1092)
++++.||+|++|++...
T Consensus 328 ~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEETTSCEEEEECC--
T ss_pred EEEcCCCeEEEEECCCC
Confidence 99999999999999764
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=344.63 Aligned_cols=299 Identities=14% Similarity=0.116 Sum_probs=239.2
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeeccccc-ceeEEeeecCCCCcEEEEEECCCCC
Q 001358 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS-MLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~-~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
..|...|.+++|||||+ +|++++ |+++++||... .+|+..... ..-.......|...|.+++|+||+
T Consensus 27 ~~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~- 94 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER- 94 (344)
T ss_dssp SSCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-
T ss_pred ccccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-
Confidence 35667899999999998 677776 77888887321 111110000 000000122366789999999985
Q ss_pred EEEEEeCCCEEEEEEccCCCCccce-EEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce
Q 001358 410 LLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~-~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
+|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|||+ +|++|+.|++|++||+.+++++..+.+|...|
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence 6889999999999999998876432 24568999999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEecCC-CEEEEEecCCCCceeEEEEeCCCC
Q 001358 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.+++|++.. ..+|++++.||+|++||+++.+....+. .+...+.+++|+|++ +++++++. ++.|++||++++
T Consensus 173 ~~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~ 247 (344)
T 4gqb_B 173 TCVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKST 247 (344)
T ss_dssp EEEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC-
T ss_pred EEEEecCCC-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCC
Confidence 999997643 2588999999999999999988877664 345578999999965 56777765 678999999999
Q ss_pred eEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCC
Q 001358 566 AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANE 643 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~d 643 (1092)
+.+..+.+|. ..|.+++|+|++ ++|++|+.|++|++||+.++++.. +.. +...|.+++|+|+++ +|++++.|
T Consensus 248 ~~~~~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~--H~~~V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 248 SCVLSSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQA--HRDFVRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp -CCEEEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECC--CSSCEEEEEECSSSTTEEEEEETT
T ss_pred cEEEEEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcC--CCCCEEEEEEeCCCCeEEEEEcCC
Confidence 9999999988 899999999998 578899999999999999987654 443 445799999999886 67789999
Q ss_pred CeEEEEECCCC
Q 001358 644 NRIKILETPES 654 (1092)
Q Consensus 644 g~i~iw~~~~~ 654 (1092)
++|++|++.+.
T Consensus 322 ~~v~~w~v~~~ 332 (344)
T 4gqb_B 322 HQVVHHVVPTE 332 (344)
T ss_dssp SCEEEEECCC-
T ss_pred CeEEEEECCCC
Confidence 99999999865
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.6e-38 Score=346.58 Aligned_cols=296 Identities=13% Similarity=0.158 Sum_probs=227.6
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
+...|.+++|+|||+.+++++ |+.+++|+.... +|+................+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 566799999999999777665 778888874321 1111000000000000002567899999999
Q ss_pred CCCEEEEEeCCeEEEEEcCCceeeEE----ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCC
Q 001358 813 NDAYLFSASGGVISLYIVMTFKTILT----IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 888 (1092)
Q Consensus 813 dg~~l~~~sdg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 888 (1092)
++.+++.+.||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ 171 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence 97655444489999999998876543 458999999999999 8999999999999999999999999999999999
Q ss_pred eEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC-CCEEEE-EeCCcEEEEEcC
Q 001358 889 VTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAE 965 (1092)
Q Consensus 889 V~~l~~spdg-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~la~-~~d~~v~lwd~~ 965 (1092)
|++++|+|++ .+|++++.|++|++||+.+++.... +.. ..+. ..+.+++|+|+ +++|++ +.|+.|++||+.
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeee--eec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 9999999998 4789999999999999998663321 111 1111 25889999995 567777 578999999999
Q ss_pred CceeeeeeccCCCcCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCC
Q 001358 966 ELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1044 (1092)
Q Consensus 966 ~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~ 1044 (1092)
+++++.. +.+|...|++++|+||| ++|++|+.|++|+|||+.++++.. +. .|...|. +++|+|++..
T Consensus 246 ~~~~~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--------~H~~~V~--~v~~sp~~~~ 313 (344)
T 4gqb_B 246 STSCVLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--------AHRDFVR--DATWSPLNHS 313 (344)
T ss_dssp C--CCEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--------CCSSCEE--EEEECSSSTT
T ss_pred CCcEEEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--------CCCCCEE--EEEEeCCCCe
Confidence 9998887 56899999999999998 589999999999999999997653 22 2556666 7889997666
Q ss_pred EEEEEeCCCcEEEEecCCC
Q 001358 1045 QFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 1045 ~l~~~~~dg~v~~w~~~~~ 1063 (1092)
+|++++.||+|++|+++..
T Consensus 314 llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEEETTSCEEEEECCC-
T ss_pred EEEEEcCCCeEEEEECCCC
Confidence 7889999999999999754
No 29
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-37 Score=355.32 Aligned_cols=340 Identities=13% Similarity=0.176 Sum_probs=281.3
Q ss_pred cCCCCceEEeecCCCceEEEEEcCcCcEEEEec----CCCCceeeeeeeeeecccccceeE-EeeecCCCCcEEEEEECC
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV----NSGQKLFIRNFKVWDIGACSMLFK-TALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~----~~~~~~~~~~~~~~d~~~~~~~~~-~~~l~~h~~~V~~l~~sp 406 (1092)
.|.+.|++++|+|+|+.+||+|+.|+.|+|||+ .+++.+...... ..+ ..++. .....+|...|.+++|+|
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTII-AEL---RHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEE-EEE---ECCCCCC------CBCEEEEEECT
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccc-ccc---cccccccccccCCCCceEEEEEcC
Confidence 455899999999999845899999999999999 888732110000 000 00000 001223788999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001358 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
++++|++++.|+.|++|| .+++.+ ..+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+..+..
T Consensus 119 ~~~~l~~~~~dg~i~i~~-~~~~~~---~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 192 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWN-KTGALL---NVLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFELKET 192 (425)
T ss_dssp TSSEEEEEETTSCEEEEE-TTSCEE---EEECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred CCCEEEEEeCCCeEEEEe-CCCCee---eeccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence 999999999999999999 444433 36789999999999999999 899999999999999999999999988887
Q ss_pred c---------------eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358 487 P---------------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 487 ~---------------v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
. +.+++|++. ..+++++.+|.|++||+........+..+...|.+++|+|++++|++++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 267 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD-- 267 (425)
T ss_dssp -------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET--
T ss_pred CccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC--
Confidence 7 888888653 46999999999999999999888888899999999999999999999986
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
++.|++||..+++.+..+.+|. ..+.+++|+|++ .+++++.|+.|++||+.+++.+..+..+. ..+.+++|+
T Consensus 268 --d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~s 339 (425)
T 1r5m_A 268 --DGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG--VPIFAGRIS 339 (425)
T ss_dssp --TSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT--CCEEEEEEC
T ss_pred --CCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC--ccEEEEEEc
Confidence 5669999999999999998877 899999999999 99999999999999999999998888654 468999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCC--------------------eeeecccccc--cceeeeecCCcccccccccCCcee
Q 001358 632 KNGTLLAVIANENRIKILETPESN--------------------SVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSVS 689 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~~--------------------~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~ 689 (1092)
|++++|++++.||.|++|++.++. .+..+..+.. .+.+++|+
T Consensus 340 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---------------- 403 (425)
T 1r5m_A 340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN---------------- 403 (425)
T ss_dssp TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC----------------
T ss_pred CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc----------------
Confidence 999999999999999999999877 7778888866 88888885
Q ss_pred ecCCCCCCcccceeeccccccceecee
Q 001358 690 VNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 690 ~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1092)
|+++++++++.|+.+++|++.
T Consensus 404 ------~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 404 ------CAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ------TTSSEEEEEESSSCCEEEECC
T ss_pred ------CCCceEEEEecCceEEEEeec
Confidence 788899999999999999964
No 30
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-36 Score=339.69 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=261.0
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|...|.+++|+||+++||+|+.|++|+|||..+++... .+..|...|.+++|+|+|. .+++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 77899999999999999999999999999999998876444 5678999999999999999 899999999999999
Q ss_pred CCCC------ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEec--CCCE
Q 001358 472 AVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRR 543 (1092)
Q Consensus 472 ~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--dg~~ 543 (1092)
+... .....+.+|...|.+++|++ ++..|++++.||+|++||+++++....+..|...|.+++++| +|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8654 34577889999999999965 567999999999999999999999999999999999999987 5789
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001358 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
+++++. ++.|++||+++++.+..+.+|. ..|.+++|+|+++++++++.|++|++||+.+++.+..+..+....
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence 999986 6679999999999999998887 899999999999999999999999999999998887776655445
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccccee
Q 001358 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
.+.+++|+|+++++++++.|+.|++||+.++..+..+.+|...|.+++|+ ||++++++
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s----------------------pdg~~l~s 343 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS----------------------PDGTAFCS 343 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC----------------------TTSSCEEE
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC----------------------CCCCEEEE
Confidence 67899999999999999999999999999999999999999999999996 78999999
Q ss_pred eccccccceec
Q 001358 704 VEAENKSEVEK 714 (1092)
Q Consensus 704 ~~~d~~i~~w~ 714 (1092)
++.|+++++|+
T Consensus 344 gs~D~~v~vW~ 354 (354)
T 2pbi_B 344 GSWDHTLRVWA 354 (354)
T ss_dssp EETTSEEEEEC
T ss_pred EcCCCCEEecC
Confidence 99999999996
No 31
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-36 Score=337.41 Aligned_cols=296 Identities=17% Similarity=0.195 Sum_probs=234.7
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeee-cC-CCCcEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RD-PGVSVNRV 402 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l-~~-h~~~V~~l 402 (1092)
.++++|.+|++.|++++|+|+ +||+|+.|++|+|||+.++..... ..+ .+ |...|.++
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~-----------------~~~~~~~h~~~v~~v 64 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI-----------------DVLDETAHKKAIRSV 64 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE-----------------EEECTTCCCSCEEEE
T ss_pred ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE-----------------EEEecCCccCCEEEE
Confidence 467889999999999999998 689999999999999987642211 013 34 99999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCC----CccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC----
Q 001358 403 VWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---- 474 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~----~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---- 474 (1092)
+|+|++++||+|+.|++|+|||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+..
T Consensus 65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCC
T ss_pred EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCC
Confidence 999999999999999999999996432 1233446889999999999999999 899999999999999943
Q ss_pred CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCceEEEEEecC--CCEEEEEecC
Q 001358 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSAN--GRRLFSCGTS 550 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~~~ 550 (1092)
.+++..+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+..|...|.+++|+|+ +.+|++++.
T Consensus 143 ~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~- 219 (330)
T 2hes_X 143 YECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD- 219 (330)
T ss_dssp CEEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-
T ss_pred eEEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-
Confidence 256788899999999999965 6689999999999999998765 456678889999999999999 678999886
Q ss_pred CCCceeEEEEeCCCC--------eEEEEEee-ccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--EEEEeCC
Q 001358 551 KEGESFLVEWNESEG--------AIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAG 619 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~--------~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~ 619 (1092)
++.|++||+.++ .....+.+ |. ..|.+++|++++ .+++++.||.|++|+..+++. .... ..
T Consensus 220 ---D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~ 291 (330)
T 2hes_X 220 ---DSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-AL 291 (330)
T ss_dssp ---TSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SC
T ss_pred ---CCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cc
Confidence 667999998765 33344443 44 889999999765 899999999999999988743 3222 12
Q ss_pred CCCC-CCceEEEcc--CCCEEEEEeCCCeEEEEECCC
Q 001358 620 GGLP-ENPRICFNK--NGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 620 ~~~~-~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
.+.. .|.+++|+| ++++|++++.||.|++|++..
T Consensus 292 ~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 292 CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2333 689999999 789999999999999999864
No 32
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.9e-37 Score=339.83 Aligned_cols=302 Identities=17% Similarity=0.271 Sum_probs=245.0
Q ss_pred cceeEecccCCCCceEEee-----cC-CCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC
Q 001358 324 KTVAQTLIEGSSSPMSMDF-----HP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~-----sp-dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
..+..+|.||++.|++++| +| |++ +|++|+.|++|+|||+.+++.... .......+.+|..
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~ 77 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNH 77 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSS
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCC
Confidence 3456789999999999999 77 887 799999999999999987543211 0011223789999
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce
Q 001358 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 477 (1092)
.|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.. ..
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~ 151 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-EC 151 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Cc
Confidence 99999999999999999999999999999986554 6789999999999999999 899999999999999874 44
Q ss_pred eEEEe---cCCcceEEEeecccCC--------ccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEE
Q 001358 478 TYSFE---GHGAPVYSLCPHAKEN--------IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 478 ~~~~~---~~~~~v~~i~~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
..... +|...|.+++|++... +.++++++.||.|++||. .......+..|...|.+++|+|+|++|++
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE
Confidence 43333 7889999999976532 268999999999999994 44556677889999999999999999999
Q ss_pred EecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE--EEeCC----
Q 001358 547 CGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG---- 619 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~---- 619 (1092)
++. ++.|++||+.+ ......+. +. ..|.+++|+|++.+++ ++.|+.|++||+.+++... .+...
T Consensus 231 gs~----dg~v~iwd~~~~~~~~~~~~-~~---~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 301 (343)
T 2xzm_R 231 GGK----DKKLLIWDILNLTYPQREFD-AG---STINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITK 301 (343)
T ss_dssp EET----TCEEEEEESSCCSSCSEEEE-CS---SCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred EcC----CCeEEEEECCCCcccceeec-CC---CcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchh
Confidence 986 67799999944 44444442 23 5799999999987765 4567889999998876543 33311
Q ss_pred -----CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358 620 -----GGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 620 -----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
++...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 302 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 34456889999999999999999999999997643
No 33
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=351.79 Aligned_cols=327 Identities=16% Similarity=0.227 Sum_probs=269.4
Q ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEc----cCCCCcc---ceEEecc----------cccceeEEEeeCCCCc
Q 001358 394 DPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAY----HGGSDAR---QQLEIDA----------HVGNVNDLAFSAPCKQ 455 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~----~~~~~~~---~~~~l~~----------h~~~v~~~~~s~d~~~ 455 (1092)
.|...|.+++|+|+|+ +||+|+.|+.|++||+ .+++.+. ....+.. |.+.|++++|+|+++
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~- 121 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN- 121 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS-
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC-
Confidence 4678999999999999 9999999999999999 8876200 1112222 688999999999999
Q ss_pred EEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCc----
Q 001358 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG---- 531 (1092)
Q Consensus 456 l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~---- 531 (1092)
+|++++.|+.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+.+......+..+...
T Consensus 122 -~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 122 -SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp -EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred -EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 899999999999999 78889999999999999999955 6789999999999999999998888877777666
Q ss_pred -----------eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC
Q 001358 532 -----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1092)
Q Consensus 532 -----------i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 600 (1092)
+.+++|++++. +++++. ++.|++||..+++.+..+..|. ..|.+++|+|+++++++++.||
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~ 269 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHH---GPISVLEFNDTNKLLLSASDDG 269 (425)
T ss_dssp --------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCS---SCEEEEEEETTTTEEEEEETTS
T ss_pred eeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCC---CceEEEEECCCCCEEEEEcCCC
Confidence 88999999865 556554 6679999999998888888776 7888888888888888888888
Q ss_pred eEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccccc
Q 001358 601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1092)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1092)
.|++||+.+++.+..+.
T Consensus 270 ~i~i~d~~~~~~~~~~~--------------------------------------------------------------- 286 (425)
T 1r5m_A 270 TLRIWHGGNGNSQNCFY--------------------------------------------------------------- 286 (425)
T ss_dssp CEEEECSSSBSCSEEEC---------------------------------------------------------------
T ss_pred EEEEEECCCCccceEec---------------------------------------------------------------
Confidence 88888876542111110
Q ss_pred ccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEE
Q 001358 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 760 (1092)
Q Consensus 681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~l 760 (1092)
T Consensus 287 -------------------------------------------------------------------------------- 286 (425)
T 1r5m_A 287 -------------------------------------------------------------------------------- 286 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEe
Q 001358 761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI 839 (1092)
Q Consensus 761 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~ 839 (1092)
.|...+.+++|+|++ ++++++ ++.|++||+.+++.+..+
T Consensus 287 ---------------------------------------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~ 326 (425)
T 1r5m_A 287 ---------------------------------------GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS 326 (425)
T ss_dssp ---------------------------------------CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ---------------------------------------CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec
Confidence 144556677777777 666665 688888888888888888
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce--------------------eeEeeccccC--CeEEEEEcCC
Q 001358 840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------VISKLEGHSK--RVTGLVFSDA 897 (1092)
Q Consensus 840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~~spd 897 (1092)
..|...+.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|++++|+|+
T Consensus 327 ~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 405 (425)
T 1r5m_A 327 IVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA 405 (425)
T ss_dssp ECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT
T ss_pred ccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC
Confidence 88999999999999 89999999999999999999988 8899999977 9999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 001358 898 LNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 898 g~~l~s~s~Dg~i~iwd~~~ 917 (1092)
+++|++++.||.|++|+++.
T Consensus 406 ~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 406 GNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp SSEEEEEESSSCCEEEECCC
T ss_pred CceEEEEecCceEEEEeecC
Confidence 99999999999999999863
No 34
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2e-36 Score=344.02 Aligned_cols=303 Identities=15% Similarity=0.231 Sum_probs=247.5
Q ss_pred cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
+|++.|++++|||||+ +||+|+ +++++||++.+|+.+.......-.. .....+.......+...|.+++|+|||++|
T Consensus 62 ~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEECCCCCEE
Confidence 6999999999999998 688876 6899999999998776422100000 000000011112344469999999999999
Q ss_pred EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEE
Q 001358 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
|+|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ .|++++.|++|++||+.++++...+. +...+.++
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 999999999999999886444 6889999999999999999 89999999999999999999888876 56778999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC
Q 001358 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
++++. ++.+|++++.||.|++||++++.....+ ..|...|.+++|+|+|++|++++. ++.|++||+.+
T Consensus 213 ~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQN 287 (393)
T ss_dssp EECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC--
T ss_pred EEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEECCC
Confidence 98653 6789999999999999999988766655 467789999999999999999986 67799999875
Q ss_pred C------------eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358 565 G------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 565 ~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
. .+...+.+|. ..|.+++|+|++.++++|+.|+.|++||..+++.+..+..|. ..|.+++|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~--~~v~~v~~~~ 362 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVISVAVAN 362 (393)
T ss_dssp -------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS
T ss_pred CCCcccccCCCCCcceEEEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC--CCEEEEEecC
Confidence 3 3455677776 889999999999999999999999999999999999888764 4689999886
Q ss_pred ------CCCEEEEEeCCCeEEEEECCC
Q 001358 633 ------NGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 633 ------~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
++++|++++.||.|++|+...
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999764
No 35
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.8e-36 Score=331.15 Aligned_cols=268 Identities=19% Similarity=0.254 Sum_probs=241.6
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.+++|+|||++||+++.||+|++||+.++..+. .+..|..+|.+++|+|+++ +|++|+.|++|++||
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence 77899999999999999999999999999999999986554 6788999999999999999 899999999999999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEec-CCCEEEEEec
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~-dg~~l~~~~~ 549 (1092)
+.+++.+..+.+|...|.+++|++ ++.+|++|+.||+|++||+++... ...+..|...|.+++|+| ++..|++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 999999999999999999999965 668999999999999999988744 457788999999999999 6789999986
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
++.|++||+.++.....+..+. ...+..+.|+| ++.++++|+.|++|++||+.+++++..+..|. ..|.+
T Consensus 162 ----D~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~ 233 (304)
T 2ynn_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (304)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred ----CCeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEE
Confidence 6779999998887766665433 36788999986 67899999999999999999999999998764 46899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecC
Q 001358 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNP 674 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 674 (1092)
++|+|++++|++++.||.|++||..+++....+..+...+.++++.|
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 99999999999999999999999999999999999999999999874
No 36
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.5e-35 Score=380.20 Aligned_cols=523 Identities=13% Similarity=0.065 Sum_probs=378.0
Q ss_pred CCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
+...+.+++|||+ + ||.++. +.|++|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 3557899999964 3 455444 789999999887543 667999999999999999999
Q ss_pred EEeCC------CEEEEEEccCCCCccceEEecccccce-------eEEEeeCCCCcEEEEEEeCC------CcEEEEECC
Q 001358 413 VAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDD------KTIKVWDAV 473 (1092)
Q Consensus 413 s~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v-------~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~ 473 (1092)
+++.+ ..|++||+.+++. ..+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 3799999988752 2577888888 9999999998 67777754 458888887
Q ss_pred CCceeEEEecCCcceEEEeecccCCccEEEEEec------------CCeEEEEEcCCCCceEEecCCCCceEEEEEecCC
Q 001358 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV------------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg 541 (1092)
+++... +..+ ....++|++ | ++++++. +...++|..........+..+...+.++.|+++
T Consensus 143 ~g~~~~-l~~~--~~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFVP-LNLG--PATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEEE-CCSC--SCSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeEE-ecCC--CcceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 776543 3323 234556754 5 7887753 345677755444555566788889999999988
Q ss_pred CEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC
Q 001358 542 RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1092)
..++++.. ++.+.+|.... +.....+..+. .+...+|+|+|++++.+. ++.|++|++.... +..+..+.
T Consensus 215 ~l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~----~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~ 284 (1045)
T 1k32_A 215 RIYFITDI----DGFGQIYSTDLDGKDLRKHTSFT----DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGD 284 (1045)
T ss_dssp EEEEEECT----TSSCEEEEEETTSCSCEECCCCC----SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCC
T ss_pred EEEEEEec----cCceEEEEEeCCCCcceEecCCC----CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCc
Confidence 44444432 33455565432 33334444443 356679999999988874 8999999995444 33444321
Q ss_pred ---------CCCCCceEEEc-cCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceee
Q 001358 621 ---------GLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690 (1092)
Q Consensus 621 ---------~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 690 (1092)
+...+..++|+ |||+++++++ ++.+.+|+...+.... +.
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~----------------------------- 333 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP----------------------------- 333 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----------------------------
T ss_pred ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----------------------------
Confidence 11247899999 9999999888 7899999877553221 10
Q ss_pred cCCCCCCcccceeeccccccceeceeeccCccceecccCCccccc-cEEEEEEecCCcEEEEeecCCeeE-EeeecCCcc
Q 001358 691 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN-KISRLTYNNGGQAIFALASNGVHL-MWRWPRNDL 768 (1092)
Q Consensus 691 ~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~~~~~dg~i~-lw~~~~~~~ 768 (1092)
.+.. .+..++|+ +|+.++.++.++.+. +|++..
T Consensus 334 -----------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~--- 368 (1045)
T 1k32_A 334 -----------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT--- 368 (1045)
T ss_dssp -----------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT---
T ss_pred -----------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC---
Confidence 0233 57788899 999888888766666 666432
Q ss_pred ccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeE
Q 001358 769 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTAT 847 (1092)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~ 847 (1092)
+. ... +. ++...+..++|||||++|++++ ++.|++||+.+++....+..|...+.
T Consensus 369 -------------------~~-~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~ 424 (1045)
T 1k32_A 369 -------------------GK-AEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 424 (1045)
T ss_dssp -------------------CC-EEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred -------------------CC-ceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence 22 111 11 2667899999999999999988 58999999999998888878889999
Q ss_pred EEEEcCCCCCEEEEEeCCC----------eEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001358 848 SLAFNPHDNNVIAIGMDDS----------TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 848 ~l~~s~~d~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~ 917 (1092)
+++||| |+++|++++.++ .|++||+.+++ +..+..|...+..++|+|||++|++++.++...+|+...
T Consensus 425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 999999 899998887654 99999999887 677888988999999999999999999988888887543
Q ss_pred Cceeee-----eeeec-----------------------CCC-------CcCCCCCceEEEEecCCCEEEE---------
Q 001358 918 WGIQTC-----RSLQT-----------------------PDG-------VMTLAPSETHIQFHKDQTRFLL--------- 953 (1092)
Q Consensus 918 ~~~~~~-----~~~~~-----------------------~~~-------~~~~~~~v~~l~~s~dg~~la~--------- 953 (1092)
...... ..+.. ..+ .....+.+..++|+|||+++++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~ 582 (1045)
T 1k32_A 503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 582 (1045)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence 321000 00000 000 0011235789999999997775
Q ss_pred ---E--eCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001358 954 ---V--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 954 ---~--~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~ 1011 (1092)
+ ....|.+||+.+++.... . ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 583 ~~~~~~~~~~l~~~d~~~~~~~~l-~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 583 YYQGAPEKGVLLKYDVKTRKVTEV-K----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HHHCCCCCEEEEEEETTTCCEEEE-E----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cccccCCCceEEEEECCCCcEEEe-e----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 234688999988875432 2 568899999999999999866 89999998887
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.1e-36 Score=334.01 Aligned_cols=324 Identities=13% Similarity=0.163 Sum_probs=272.6
Q ss_pred CCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
|.+.|.+++|||||+ +++++..++.+.+|+........ ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 456899999999998 57777766666666544322221 1447999999999999999999
Q ss_pred EEeCCCEEEEEEccCCCCccceEEec--ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc--eeEEEecCCcce
Q 001358 413 VAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV 488 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v 488 (1092)
+++ |+.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999887655544444 7999999999999999 89999999999999999887 667788999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001358 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
.+++|++ ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+.+++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999965 6789999999999999999998888888889999999999999999999986 667999999999988
Q ss_pred EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001358 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1092)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1092)
..+.. . ..+.+++|+|+++++++++.++.|++||+.+++... +.. +...+.+++|+|+++++++++.||.|++
T Consensus 219 ~~~~~-~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 219 QQHDF-T---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHL--HESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp EEEEC-S---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECC--CSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeecC-C---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcC--CccceeEEEECCCCCEEEEecCCCcEEE
Confidence 77753 3 689999999999999999999999999999887653 333 3456899999999999999999999999
Q ss_pred EECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceeccc
Q 001358 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1092)
Q Consensus 649 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 728 (1092)
|++.+++.+...
T Consensus 292 ~~~~~~~~~~~~-------------------------------------------------------------------- 303 (337)
T 1gxr_A 292 WRTPYGASIFQS-------------------------------------------------------------------- 303 (337)
T ss_dssp EETTTCCEEEEE--------------------------------------------------------------------
T ss_pred EECCCCeEEEEe--------------------------------------------------------------------
Confidence 999876543211
Q ss_pred CCccccccEEEEEEecCCcEEEEeecCCeeEEeee
Q 001358 729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1092)
Q Consensus 729 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~ 763 (1092)
.+...+.+++|+|+++.+++++.||.+++|++
T Consensus 304 ---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 304 ---KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ---cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 14556788888899988888888999998885
No 38
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.9e-37 Score=349.14 Aligned_cols=290 Identities=15% Similarity=0.167 Sum_probs=255.8
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.+++|+|+|++||+|+.|++|+|||+.+++... .+.+|...|.+++|+|+|+ +|++|+.|+.|++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 78999999999999999999999999999999999886544 6789999999999999999 899999999999999
Q ss_pred CCCCc-------eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-----cCCCCceEEEEEec
Q 001358 472 AVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYSA 539 (1092)
Q Consensus 472 ~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~~~~~~i~~~~~s~ 539 (1092)
+.+.. ....+.+|.+.|.++.|.+.. +..|++|+.|++|++||+.++.....+ ..|...|.++++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87532 345678999999999997653 357999999999999999998887766 56778899999987
Q ss_pred -CCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001358 540 -NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 540 -dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
+++++++++. ++.|++||++ .+..+..+.+|. ..|.+++|+|+++++++|+.||+|++||+.++..+..+.
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHE---GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCS---SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcC---CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 8899999986 6679999997 567788888888 899999999999999999999999999999999988876
Q ss_pred CCCC-----CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeec----ccccccceeeeecCCcccccccccCCce
Q 001358 618 AGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA----GVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1092)
Q Consensus 618 ~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 688 (1092)
.+.. ...+.+++|+|+|+++++|+.||.|++||...++.+..+ .+|...|.+++++
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s--------------- 353 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS--------------- 353 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC---------------
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC---------------
Confidence 5422 234889999999999999999999999999988877665 6788899999886
Q ss_pred eecCCCCCCcccceeeccccccceecee
Q 001358 689 SVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1092)
|||+++++++.|+++++|++.
T Consensus 354 -------~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 354 -------SDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp -------SSSSEEEEECTTSCEEEEECC
T ss_pred -------CCCCEEEEeeCCCCEEEEecC
Confidence 789999999999999999976
No 39
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.1e-36 Score=333.93 Aligned_cols=303 Identities=18% Similarity=0.262 Sum_probs=260.6
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+..+|+||++.|++|+|+|++..+||||+.|++|+|||+.+++..... ....+.+|...|.+++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEE
Confidence 4456899999999999999985348999999999999999887654321 12237899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee-EEEec
Q 001358 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEG 483 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~ 483 (1092)
+|||++|++++.|+.|++|+...+.... ....+...+..+.+++++. .+++++.|+.+++||....... ....+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence 9999999999999999999998875443 5567888899999999999 7999999999999998766543 44578
Q ss_pred CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
|...+..++|.+.+...++++++.|+.|++||+.+......+..|...|.+++|+|++++|++++. ++.|++||+.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~ 245 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLN 245 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEec
Confidence 999999999988877789999999999999999999999999999999999999999999999986 6779999999
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-------CCCCCCceEEEccCCCE
Q 001358 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-------GGLPENPRICFNKNGTL 636 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~~~ 636 (1092)
+++.+..+..+ ..+.+++|+|++ .+++++.|+.|++||++++..+..+..+ .+...|.+++|+|+|++
T Consensus 246 ~~~~~~~~~~~----~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 246 EGKHLYTLDGG----DIINALCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp TTEEEEEEECS----SCEEEEEECSSS-SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred cCceeeeecCC----ceEEeeecCCCC-ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 99999888764 479999999986 4666778999999999998887766532 34557899999999999
Q ss_pred EEEEeCCCeEEEEECCCCC
Q 001358 637 LAVIANENRIKILETPESN 655 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~ 655 (1092)
|++|+.||.|+||++.+|.
T Consensus 321 l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTSCEEEEEEEC--
T ss_pred EEEEeCCCEEEEEeCCCcC
Confidence 9999999999999998763
No 40
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.6e-35 Score=326.07 Aligned_cols=297 Identities=21% Similarity=0.275 Sum_probs=253.0
Q ss_pred eecCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEEccCCCCc--cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcE
Q 001358 391 LVRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~~--~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 488999999999999965 89999999999999999754321 23446889999999999999999 89999999999
Q ss_pred EEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecC------C
Q 001358 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN------G 541 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d------g 541 (1092)
++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||++. .....+..|...+.++.++|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999999999999999999999999955 668999999999999999964 566677889999999999985 4
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001358 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1092)
..+++++. ++.|++||+.+++....+.+|. ..|.+++|+|++++|++++.||+|++||+.+++.+..+..+
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-- 237 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-- 237 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--
Confidence 47888876 6679999999999999999888 89999999999999999999999999999999999888765
Q ss_pred CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccc
Q 001358 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
..+.+++|+|++.++++++.+ .+++|++.....+..+..+...
T Consensus 238 -~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~----------------------------------- 280 (319)
T 3frx_A 238 -DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG----------------------------------- 280 (319)
T ss_dssp -SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT-----------------------------------
T ss_pred -CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc-----------------------------------
Confidence 358999999999999988765 5999998865444333211000
Q ss_pred eeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecC
Q 001358 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1092)
Q Consensus 702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~ 765 (1092)
....+...+.+++|+|+|++|++++.||.|++|++..
T Consensus 281 ---------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 281 ---------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp ---------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred ---------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 0012456788999999999999999999999999754
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-37 Score=355.87 Aligned_cols=353 Identities=13% Similarity=0.186 Sum_probs=274.4
Q ss_pred CCceEEeecCCCceEEEEE----------cCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 335 SSPMSMDFHPVQHTLLLVG----------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg----------~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
..|.+++|+|+|+.++|+| +.|+.|+|||+.++...... ....|...|.+++|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~-----------------~~~~~~~~v~~~~~ 75 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI-----------------ASLQVDSKFNDLDW 75 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS-----------------CCCCCSSCEEEEEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE-----------------EEEecCCceEEEEE
Confidence 4799999999997689999 88999999999987633110 02358899999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCC-ccceEEecccccceeEEEeeCC-CCcEEEEEEeCCCcEEEEECCCCc------
Q 001358 405 SPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS------ 476 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~------ 476 (1092)
+|++++|++++.|+.|++||+.+... ......+.+|...|.+++|+|+ ++ +|++++.|+.|++||+.+++
T Consensus 76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccccc
Confidence 99999999999999999999987211 1234467899999999999999 66 79999999999999999887
Q ss_pred eeE---EEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCceEEEEEecCC-CEEEE
Q 001358 477 RTY---SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANG-RRLFS 546 (1092)
Q Consensus 477 ~~~---~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~dg-~~l~~ 546 (1092)
... .+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+..+ ...+.+++|+|++ .++++
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred cccccccccCCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence 333 34679999999999764 2579999999999999999998888877776 6789999999998 57777
Q ss_pred EecCCCCceeEEEEeCCCC-eEEEEEe-eccccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001358 547 CGTSKEGESFLVEWNESEG-AIKRTYQ-GLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~-~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
++.++ .++.|++||+.++ ..+..+. +|. ..|.+++|+| +++++++++.||.|++||+.+++.+..+..+. .
T Consensus 233 ~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~--~ 306 (416)
T 2pm9_A 233 ATGSD-NDPSILIWDLRNANTPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG--N 306 (416)
T ss_dssp EECCS-SSCCCCEEETTSTTSCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS--S
T ss_pred EECCC-CCceEEEEeCCCCCCCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC--C
Confidence 76532 1237999999986 6667776 676 8999999999 89999999999999999999999999988664 4
Q ss_pred CCceEEEccCC-CEEEEEeCCCeEEEEECCCCCeeeeccc--ccccceeeeecCCccccc---------------ccccC
Q 001358 624 ENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGV--LSDNLRKLSVNPISTVTG---------------AGIAN 685 (1092)
Q Consensus 624 ~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---------------~~~~~ 685 (1092)
.|.+++|+|++ .++++++.|+.|++|++.+......... .........+.+.....+ .....
T Consensus 307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (416)
T 2pm9_A 307 WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPS 386 (416)
T ss_dssp CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCS
T ss_pred ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCc
Confidence 68999999998 8999999999999999987754332211 000000001111000000 00111
Q ss_pred CceeecCCCCCCcccceeeccccccceeceee
Q 001358 686 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 686 ~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 717 (1092)
..++| +|||+++++++.|+.|++|++.+
T Consensus 387 ~~~~~----s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 387 PAAHW----AFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCCEE----ETTTEEECBCTTSSCBCCBCCCC
T ss_pred cceEE----eeCCeEEEEeCCCCeEEEEEecc
Confidence 13344 78999999999999999999763
No 42
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-36 Score=334.71 Aligned_cols=301 Identities=17% Similarity=0.206 Sum_probs=239.8
Q ss_pred cccc-cEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001358 732 VKAN-KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 732 ~~~~-~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
+|.. .|..++|+|+|+.|++++.|+.|++|++..... .....+ ..+|...|.+++|
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------------------~~~~~~-~~~h~~~v~~~~~ 69 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------------------ICKSVL-SEGHQRTVRKVAW 69 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------------------EEEEEE-CSSCSSCEEEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------------------eeeeee-ccccCCcEEEEEE
Confidence 3666 899999999999999999999999999764321 000001 1248999999999
Q ss_pred ecCCCEEEEEe-CCeEEEEEcCCc--eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---eeeEeecc
Q 001358 811 SKNDAYLFSAS-GGVISLYIVMTF--KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEG 884 (1092)
Q Consensus 811 s~dg~~l~~~s-dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~ 884 (1092)
+|++++|++++ |+++++||..++ +.+..+.+|...|.+++|+| ++++|++|+.|+.|++||+.++ +++..+.+
T Consensus 70 sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 148 (345)
T 3fm0_A 70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence 99999999998 799999999866 46788999999999999999 8999999999999999999876 45677889
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEE
Q 001358 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 963 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd 963 (1092)
|...|.+++|+|++++|++++.|++|++||+..++. .+.....+|.. .|.+++|+|+|++|++ +.|++|++||
T Consensus 149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~---~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHES---TVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCC---ceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 999999999999999999999999999999987542 23344556554 7999999999999999 6889999999
Q ss_pred cCCc---------------eeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE--eeccccccCCCC
Q 001358 964 AEEL---------------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC--RILSTAYLRPTT 1026 (1092)
Q Consensus 964 ~~~~---------------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~--~~~~~~~~~~~~ 1026 (1092)
.... +++..+...|...|.+++|+|++..|++++.|+.|++|+...+.... .+....... ..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~ 301 (345)
T 3fm0_A 223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH-QA 301 (345)
T ss_dssp EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET-TS
T ss_pred cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec-cc
Confidence 6321 23334344489999999999999999999999999999988653210 010000111 12
Q ss_pred ccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001358 1027 SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus 1027 ~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
|...|. +++|+|+++.+||+|+.||+|++|++...+.
T Consensus 302 h~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 302 HSQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp SSSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred ccCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 455555 7899996557999999999999999976664
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.4e-35 Score=324.42 Aligned_cols=291 Identities=20% Similarity=0.287 Sum_probs=260.3
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
.+.+|...|.+++|+|+|++||+++.|+.|++|++.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 378999999999999999999999999999999999886544 6789999999999999999 89999999999999
Q ss_pred ECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
|+.+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+++.+....+..+..+|.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9999999999999999999999965 6689999999999999999999988899999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
++.|++||+.+++.+..+.... ...+..++|+|+++++++++.||.|++||+.+++.+..+..+..........+
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred ---CCcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence 5679999999998887765443 46799999999999999999999999999999999998877654333334444
Q ss_pred c-cCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeec--cc
Q 001358 631 N-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--AE 707 (1092)
Q Consensus 631 s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~d 707 (1092)
+ +++.++++++.||.|++||+.+++.+..+.+|...+.+++++ |+++.+++++ .|
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----------------------p~~~~l~s~~~~~d 302 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH----------------------PTENIIASAALEND 302 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------SSSSEEEEEECTTT
T ss_pred EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec----------------------CcCCceEEEEccCC
Confidence 4 678999999999999999999999999999999999999996 6777888876 68
Q ss_pred cccceecee
Q 001358 708 NKSEVEKPL 716 (1092)
Q Consensus 708 ~~i~~w~~~ 716 (1092)
++|++|+.+
T Consensus 303 ~~i~~W~~d 311 (312)
T 4ery_A 303 KTIKLWKSD 311 (312)
T ss_dssp CCEEEEECC
T ss_pred ccEEEecCC
Confidence 999999854
No 44
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-35 Score=323.42 Aligned_cols=306 Identities=15% Similarity=0.182 Sum_probs=232.9
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001358 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
+.+.+..+.+|. ..|.+++|+|+ +|++|+.|++|++||+.++ .....+....+...|.+++|+|++++|++++
T Consensus 3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 456677888888 89999999987 8999999999999999875 3445553322456799999999999999999
Q ss_pred CCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCc
Q 001358 642 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 721 (1092)
Q Consensus 642 ~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~ 721 (1092)
.|+.|++|+........
T Consensus 78 ~D~~v~iw~~~~~~~~~--------------------------------------------------------------- 94 (330)
T 2hes_X 78 FDSTVSIWAKEESADRT--------------------------------------------------------------- 94 (330)
T ss_dssp TTSCEEEEEC----------------------------------------------------------------------
T ss_pred CCCcEEEEEcccCcCcc---------------------------------------------------------------
Confidence 99999999975321000
Q ss_pred cceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCC
Q 001358 722 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 801 (1092)
Q Consensus 722 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 801 (1092)
. ..+ . ... + .+|
T Consensus 95 -----------~-----------~~~-~-----------------------------------------~~~--~--~~h 106 (330)
T 2hes_X 95 -----------F-----------EMD-L-----------------------------------------LAI--I--EGH 106 (330)
T ss_dssp -----------C-----------CCE-E-----------------------------------------EEE--E--C--
T ss_pred -----------c-----------cce-e-----------------------------------------EEE--E--cCC
Confidence 0 000 0 000 0 037
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC----ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001358 802 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
...|.+++|+|++++|++++ |++|++||+.. .+++..+.+|...|.+++|+| ++.+|++|+.|++|++||..++
T Consensus 107 ~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp --CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCC
Confidence 77888888888888888887 78899998842 356778899999999999999 8999999999999999999876
Q ss_pred --eeeEeeccccCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCce---eeeeeeecCCC-CcCCCCCceEEEEecCC
Q 001358 877 --EVISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGI---QTCRSLQTPDG-VMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 877 --~~~~~l~~h~~~V~~l~~spd--g~~l~s~s~Dg~i~iwd~~~~~~---~~~~~~~~~~~-~~~~~~~v~~l~~s~dg 948 (1092)
+++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+.. ..........+ |. ..|.+++|++++
T Consensus 186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~ 262 (330)
T 2hes_X 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG 262 (330)
T ss_dssp EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS
T ss_pred CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC
Confidence 678899999999999999999 77999999999999999975421 11123333333 33 379999999877
Q ss_pred CEEEEEeCCcEEEEEcCCce--eeeeeccCCCc-CEEEEEEec--CCCEEEEEeCCCcEEEEECCC
Q 001358 949 TRFLLVHETHLAIYEAEELT--CLKQWFPISSV-PISQATFSC--DCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 949 ~~la~~~d~~v~lwd~~~~~--~~~~~~~~h~~-~v~~l~fs~--dg~~l~t~s~Dg~i~vwd~~~ 1009 (1092)
.++..+.|+.|++||..+++ .......+|.. .|.+++|+| |+++|++|+.||+|++|++..
T Consensus 263 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 263 LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 54444789999999998774 34444467876 899999999 789999999999999999875
No 45
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.9e-35 Score=333.39 Aligned_cols=290 Identities=17% Similarity=0.228 Sum_probs=248.4
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccc------------------cceeEEEeeCCCCc
Q 001358 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV------------------GNVNDLAFSAPCKQ 455 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~------------------~~v~~~~~s~d~~~ 455 (1092)
+|...|.+++|||||++||+|+ ++.+++|++.+++.+. .+..|. ..|.+++|+|||+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 6789999999987554 343332 2499999999999
Q ss_pred EEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEE
Q 001358 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1092)
Q Consensus 456 l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 535 (1092)
+|++|+.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+++++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 899999999999999999999999999999999999965 66899999999999999999887766665 44578999
Q ss_pred EEec-CCCEEEEEecCCCCceeEEEEeCCCCeEEEEE-------eeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358 536 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTY-------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 536 ~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
+|+| +++++++++. ++.|++||..++..+..+ .+|. ..|.+++|+|+++++++|+.|++|++||+
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHK---DSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9999 8999999986 566999999999888776 3444 89999999999999999999999999999
Q ss_pred CCCc------------eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCC
Q 001358 608 NKVQ------------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1092)
Q Consensus 608 ~~~~------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1092)
.+.. +...+..| ...|.+++|+|++.+|++++.|+.|++||..+++.+..+.+|...|.++++++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~ 363 (393)
T 1erj_A 286 QNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 363 (393)
T ss_dssp ---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred CCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC
Confidence 7643 33444444 446899999999999999999999999999999999999999999999999864
Q ss_pred cccccccccCCceeecCCCCCCcccceeeccccccceeceee
Q 001358 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 717 (1092)
... +|+++.+++++.|+++++|++..
T Consensus 364 ~~~----------------~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 364 SSL----------------GPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CTT----------------CTTCEEEEEEETTSEEEEEEEEE
T ss_pred cCc----------------CCCCCEEEEECCCCcEEECcccc
Confidence 322 57899999999999999999763
No 46
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=6.9e-34 Score=364.66 Aligned_cols=529 Identities=10% Similarity=0.019 Sum_probs=372.3
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC------CCcEE
Q 001358 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIK 468 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~ 468 (1092)
+...+.+.+||| +.||.++. +.|++|++.+++.. .+.+|...+.+++|||||+ .|++++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456789999995 58888876 68999999987532 4678999999999999999 5665543 34799
Q ss_pred EEECCCCceeEEEecCCcce-------EEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEE
Q 001358 469 VWDAVTGSRTYSFEGHGAPV-------YSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v-------~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~ 535 (1092)
+||+.+++ ...+..|...+ ..++|++ ||+++++++.+ ..|..|++..+....... . ....+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~--~~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL-G--PATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS-C--SCSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEEecC-C--Cccee
Confidence 99998876 56788888888 8888855 66677777754 357777776654433222 2 23457
Q ss_pred EEecCCCEEEEEecCCC--------CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358 536 AYSANGRRLFSCGTSKE--------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
+|+| | .+++++...+ +.....+|....+.....+.+|. ..+.++.|+++ ..+++++.++.+.+|.+
T Consensus 158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~---~~v~~~~~s~d-~l~~~~~~dg~~~l~~~ 231 (1045)
T 1k32_A 158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGH-RIYFITDIDGFGQIYST 231 (1045)
T ss_dssp EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC---CcccceEEeCC-EEEEEEeccCceEEEEE
Confidence 7999 8 7777643211 12234455432223445556666 88999999998 56667788899999976
Q ss_pred CC-CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCC
Q 001358 608 NK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1092)
Q Consensus 608 ~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 686 (1092)
.. +.....+..+. .+...+|+|||++++.+. ++.|++|+.... .+..+..+....
T Consensus 232 ~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~------------------- 287 (1045)
T 1k32_A 232 DLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLES------------------- 287 (1045)
T ss_dssp ETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCB-------------------
T ss_pred eCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccc-------------------
Confidence 53 33444444332 367789999999998884 789999998432 222222100000
Q ss_pred ceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEe-cCCcEEEEeecCCeeEEeeecC
Q 001358 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPR 765 (1092)
Q Consensus 687 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~lw~~~~ 765 (1092)
.. .| ..+...+..++|+ |||+.+++++ ++.+.+|+...
T Consensus 288 ----------------------~~-~~-----------------~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~ 326 (1045)
T 1k32_A 288 ----------------------PE-DR-----------------IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG 326 (1045)
T ss_dssp ----------------------CC-SE-----------------EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred ----------------------cc-cc-----------------cccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence 00 00 0144567789999 9999888877 77888876543
Q ss_pred CccccCcccccccCCccccCCCCCceeeecCCCCCCCC-CeeEEEEecCCCEEEEEeC-CeEE-EEEcCCceeeEEecCC
Q 001358 766 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE-AVPCFALSKNDAYLFSASG-GVIS-LYIVMTFKTILTIMPP 842 (1092)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~v~~~~~s~dg~~l~~~sd-g~i~-iwd~~~~~~~~~~~~~ 842 (1092)
. . ... +. .+.. .+..++|+ ||+.++++++ +.+. +|++.+++.. .+.+|
T Consensus 327 ~----------------------~-~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~ 377 (1045)
T 1k32_A 327 T----------------------Y-VLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN 377 (1045)
T ss_dssp S----------------------B-EEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC
T ss_pred C----------------------c-eEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCC
Confidence 2 1 111 11 2555 78899999 9999999885 6688 8899877654 34477
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC----------cEEE
Q 001358 843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA----------QIFV 912 (1092)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg----------~i~i 912 (1092)
...+..++|+| |+++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++ .|++
T Consensus 378 ~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 378 LGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp CCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred ccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 78999999999 899999999999999999999998888878999999999999999999887654 8999
Q ss_pred EEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCcee----------------------
Q 001358 913 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC---------------------- 969 (1092)
Q Consensus 913 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~---------------------- 969 (1092)
||+.+++. .....+.. .+..++|+|||++|+. +.++...+|+......
T Consensus 457 ~d~~~g~~------~~l~~~~~---~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1045)
T 1k32_A 457 YDMEGRKI------FAATTENS---HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 527 (1045)
T ss_dssp EETTTTEE------EECSCSSS---BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred EECCCCcE------EEeeCCCc---ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence 99998641 11222222 4778999999999988 4445555554322111
Q ss_pred --------------------eeeeccCCCcCEEEEEEecCCCEEEE-------------EeCCCcEEEEECCCCceEEee
Q 001358 970 --------------------LKQWFPISSVPISQATFSCDCRMVFT-------------SFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 970 --------------------~~~~~~~h~~~v~~l~fs~dg~~l~t-------------~s~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
....+..|.+.+..++|+|||+++++ ...+..|.+||+.+++.....
T Consensus 528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 607 (1045)
T 1k32_A 528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK 607 (1045)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE
T ss_pred cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee
Confidence 01112346678999999999987875 123457888999988754222
Q ss_pred ccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001358 1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1017 ~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
. .+ ..++++| |+.+|++++.+ .|++||+....
T Consensus 608 ~------------~v--~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 608 N------------NL--TDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp E------------EE--EEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred c------------Cc--ceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 1 12 3678999 58999988766 89999996544
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.2e-35 Score=342.36 Aligned_cols=346 Identities=13% Similarity=0.120 Sum_probs=284.3
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce
Q 001358 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 477 (1092)
.+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcce
Confidence 35578999999999999999999999999876655 33445 4455668899999 899999999999999999999
Q ss_pred eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeE
Q 001358 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
...+.+|...|.+++|++ ++.+|++++.||.|++||+.+.+....+..|...|.+++|+|++++|++++. ++.|
T Consensus 132 ~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~v 205 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGTI 205 (420)
T ss_dssp EEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSCE
T ss_pred eeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCcE
Confidence 988889999999999965 6689999999999999999999999999999999999999999999999986 5669
Q ss_pred EEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE
Q 001358 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1092)
++||+.+++.+..+..+..+...+.++++.|.+...+ .. .+...+.+++|+|+++++
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------~~--~~~~~v~~~~~s~~~~~l 262 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL---------------------HE--ISTSKKNNLEFGTYGKYV 262 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC---------------------GG--GCCCCCCTTCSSCTTEEE
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEecCCccee---------------------ee--cccCcccceEEcCCCCEE
Confidence 9999999999999998766668899998887653220 01 112457889999999999
Q ss_pred EEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceee
Q 001358 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 638 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 717 (1092)
++++.||.|++||+.+++....+.
T Consensus 263 ~~~~~dg~i~i~d~~~~~~~~~~~-------------------------------------------------------- 286 (420)
T 3vl1_A 263 IAGHVSGVITVHNVFSKEQTIQLP-------------------------------------------------------- 286 (420)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC--------------------------------------------------------
T ss_pred EEEcCCCeEEEEECCCCceeEEcc--------------------------------------------------------
Confidence 999999999999987543221100
Q ss_pred ccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCC
Q 001358 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797 (1092)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 797 (1092)
T Consensus 287 -------------------------------------------------------------------------------- 286 (420)
T 3vl1_A 287 -------------------------------------------------------------------------------- 286 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeEEEEecCCC-EEEEEe-CCeEEEEEcCCcee-eEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001358 798 DSNSQEAVPCFALSKNDA-YLFSAS-GGVISLYIVMTFKT-ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 873 (1092)
Q Consensus 798 ~~~~~~~v~~~~~s~dg~-~l~~~s-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~ 873 (1092)
..|...+.+++|+|+++ ++++++ ||.|++||+.+++. +..+.. |...+.++.+. ++++|++++.||.|++|++
T Consensus 287 -~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 287 -SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp -CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEE
T ss_pred -cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEec
Confidence 02566788888888888 888877 68899999887754 566665 56677888654 5779999999999999999
Q ss_pred CCc---------eeeEeeccccCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCC
Q 001358 874 RSS---------EVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 874 ~~~---------~~~~~l~~h~~~V~~l~~spdg~---~l~s~s~Dg~i~iwd~~~ 917 (1092)
.+. .....+.+|.+.|.+++|+|+++ .+++++.+|.+.+|+++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 364 SDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 873 22334567899999999999999 788888899999999875
No 48
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-36 Score=346.04 Aligned_cols=382 Identities=13% Similarity=0.146 Sum_probs=287.4
Q ss_pred eecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeee-cCCCCcEEEEEECC-CCCEEEEEeCCC
Q 001358 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RDPGVSVNRVVWSP-DGSLLGVAYSKH 418 (1092)
Q Consensus 341 ~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l-~~h~~~V~~l~~sp-dg~~las~~~d~ 418 (1092)
.|+|+++ .+++++ .|+ .+++.+.. + .+|.+.|.+++|+| ++++||+|+.||
T Consensus 34 ~f~~~~~-~~~~~~------~w~-~~g~~~~~-------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg 86 (437)
T 3gre_A 34 EFGPIQE-IVRSPN------MGN-LRGKLIAT-------------------LMENEPNSITSSAVSPGETPYLITGSDQG 86 (437)
T ss_dssp GGCCCCC-CCCCCC------GGG-CCCCEEEE-------------------ECTTTTSCEEEEEEECSSSCEEEEEETTS
T ss_pred hcCCccc-cccccc------ccc-ccceEEee-------------------eccCCCCceEEEEECCCCCCEEEEecCCc
Confidence 5789998 455544 377 44555543 4 78999999999999 999999999999
Q ss_pred EEEEEEccC---CCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC---CCceeEEEecCCcceEEEe
Q 001358 419 IVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLC 492 (1092)
Q Consensus 419 ~i~iwd~~~---~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~i~ 492 (1092)
+|+|||+.+ +........+ +|...|.+++|+|+++ +|++|+.|++|++||++ +++.+..+.+| .+..+.
T Consensus 87 ~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~ 161 (437)
T 3gre_A 87 VIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKIN 161 (437)
T ss_dssp EEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEE
T ss_pred eEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEE
Confidence 999999987 5534333333 5999999999999999 89999999999999994 77877777766 677777
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE--EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001358 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~--~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1092)
+.+.+ +...+.++. +++++.++++++. ++.|++||+.+++.+..
T Consensus 162 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 162 LKNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERLQI 207 (437)
T ss_dssp GGGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEEEE
T ss_pred ccCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeeEE
Confidence 65431 112334444 6789999999986 66799999999999999
Q ss_pred Eee--ccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc----cCCCEEEEEeCCC
Q 001358 571 YQG--LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN----KNGTLLAVIANEN 644 (1092)
Q Consensus 571 ~~~--~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~dg 644 (1092)
+.+ |. ..|.+++|+|+++++++|+.||.|++||+++++.+..+..... ..|.+++|+ |++.++++++.||
T Consensus 208 ~~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~dg 283 (437)
T 3gre_A 208 IENSPRH---GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKT 283 (437)
T ss_dssp EECCGGG---CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred EccCCCC---CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEEcCCC
Confidence 998 55 8999999999999999999999999999999999988864322 368899665 4688999999999
Q ss_pred eEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccce
Q 001358 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~ 724 (1092)
.|++||+.+++.+..+.++...+..+.++|.+ +.+
T Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~l----------------------- 318 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIE----------------------KGL----------------------- 318 (437)
T ss_dssp EEEEEETTTTEEEEEEESSSSCCCGGGGSCBC----------------------SSG-----------------------
T ss_pred cEEEEEcCCCcEEEEEEcCCCCCccceecccc----------------------ccc-----------------------
Confidence 99999999998888777766655544444221 111
Q ss_pred ecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCC
Q 001358 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 804 (1092)
Q Consensus 725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 804 (1092)
.+. .+.+..|...
T Consensus 319 -----------------------------~~~--------------------------------------~~~~~~~~~~ 331 (437)
T 3gre_A 319 -----------------------------EEL--------------------------------------NFCGIRSLNA 331 (437)
T ss_dssp -----------------------------GGC--------------------------------------CCCCCCSGGG
T ss_pred -----------------------------ccc--------------------------------------eecccccCCc
Confidence 000 0000127788
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCC---CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeE
Q 001358 805 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP---TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 880 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~---~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 880 (1092)
|.+++|+ ++++|++++ |+.|++||+.+++....+.+|.. .+....+++ ...+++.. |+...+....
T Consensus 332 v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~ 401 (437)
T 3gre_A 332 LSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVD 401 (437)
T ss_dssp GCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC--------
T ss_pred eEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccC
Confidence 9999999 778899887 79999999999999988887643 456666776 55454443 3344455556
Q ss_pred eeccccCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 001358 881 KLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 881 ~l~~h~~~V~~l~~spd--g~~l~s~s~Dg~i~iwd 914 (1092)
....|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 402 ~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 402 DSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 66779999999999998 78999999999999995
No 49
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-34 Score=321.91 Aligned_cols=322 Identities=14% Similarity=0.136 Sum_probs=267.1
Q ss_pred ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC
Q 001358 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1092)
Q Consensus 439 ~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~ 518 (1092)
.|.++|.+++|+|||+ .++++..++.+.+|+...........+|...|.+++|++ +++++++++ ||.|++||+.+
T Consensus 7 ~~~~~v~~~~~s~dg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQ--MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEEECCEEEECSSSC--EEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTS
T ss_pred ccCCceeEEEECCCCC--EEEeecCCCcEeccccCCccccceeccCCCceEEEEEec--CCcEEEEcC-CCeEEEEECCC
Confidence 3667899999999999 787777777777776665555555558999999999954 778999998 99999999987
Q ss_pred CCceE---Eec--CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCC
Q 001358 519 LGARV---DYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 519 ~~~~~---~~~--~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1092)
..... .+. .+...+.+++|+|+++++++++. ++.|++||..+++ ....+..|. ..+.+++|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~ 154 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE----ASTLSIWDLAAPTPRIKAELTSSA---PACYALAISPDSK 154 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES----SSEEEEEECCCC--EEEEEEECSS---SCEEEEEECTTSS
T ss_pred CCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCCcceeeecccCC---CceEEEEECCCCC
Confidence 65322 222 67889999999999999999876 6679999999887 556666666 8899999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeee
Q 001358 592 QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS 671 (1092)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 671 (1092)
++++++.||.|++||+.+++.+..+..+. ..+.+++|+|+++++++++.||.|++||+.+++.....
T Consensus 155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----------- 221 (337)
T 1gxr_A 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----------- 221 (337)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------
T ss_pred EEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-----------
Confidence 99999999999999999999988887653 46899999999999999999999999998754221110
Q ss_pred ecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEE
Q 001358 672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 751 (1092)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 751 (1092)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEc
Q 001358 752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV 830 (1092)
Q Consensus 752 ~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~ 830 (1092)
.+...+.+++|+|+++++++++ ++.|++||+
T Consensus 222 ------------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 222 ------------------------------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp ------------------------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ------------------------------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 0334566778888888888777 578888888
Q ss_pred CCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcE
Q 001358 831 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 910 (1092)
Q Consensus 831 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i 910 (1092)
.+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|
T Consensus 254 ~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 254 NKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp TSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred CCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeE
Confidence 77665 45677899999999999 8999999999999999999999877554 488999999999999999999999999
Q ss_pred EEEEcC
Q 001358 911 FVWDVD 916 (1092)
Q Consensus 911 ~iwd~~ 916 (1092)
++|++.
T Consensus 331 ~iw~~~ 336 (337)
T 1gxr_A 331 TVYEVI 336 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999973
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.2e-35 Score=342.43 Aligned_cols=350 Identities=12% Similarity=0.113 Sum_probs=283.7
Q ss_pred CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
+.+++++|+|+|+ +|++|+.|+.|++||+.+++.... +..| ..+...+|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEE
Confidence 3456899999999 589999999999999998765542 3344 455566889999999999
Q ss_pred eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeec
Q 001358 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 494 (1092)
+.|+.|++||+.+++... .+.+|.+.|.+++|+|+++ +|++++.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999875443 5679999999999999999 89999999999999999999999999999999999996
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001358 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
+ ++.+|++++.||.|++||+++.+....+.. +...+.++++.+++...+ .
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------------------~ 243 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL-------------------------H 243 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC-------------------------G
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee-------------------------e
Confidence 5 678999999999999999999888777764 455788888776543221 1
Q ss_pred eeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEE
Q 001358 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILE 650 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~ 650 (1092)
..+ ...+.+++|+|+++++++++.||.|++||+.+++....+... +...+.+++|+|+++ ++++++.||.|++||
T Consensus 244 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd 319 (420)
T 3vl1_A 244 EIS---TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWD 319 (420)
T ss_dssp GGC---CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred ecc---cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 111 267888899999999999999999999999999888777542 335689999999999 999999999999999
Q ss_pred CCCCCe-eeeccc-ccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCcccee-cc
Q 001358 651 TPESNS-VDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS-LL 727 (1092)
Q Consensus 651 ~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~-~~ 727 (1092)
+.++.. +..+.. +...+.++.+ ++++++++++.|+.+++|++.......... ..
T Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~ 376 (420)
T 3vl1_A 320 LRSPECPVGEFLINEGTPINNVYF-----------------------AAGALFVSSGFDTSIKLDIISDPESERPAIEFE 376 (420)
T ss_dssp TTCTTSCSEEEEESTTSCEEEEEE-----------------------ETTEEEEEETTTEEEEEEEECCTTCCSCEECTT
T ss_pred cCCCcCchhhhhccCCCCceEEEe-----------------------CCCCEEEEecCCccEEEEeccCCCCCccceecc
Confidence 998743 566665 4555655543 467889999999999999987532221111 00
Q ss_pred --cCCccccccEEEEEEecCCc---EEEEeecCCeeEEeeec
Q 001358 728 --LPSKVKANKISRLTYNNGGQ---AIFALASNGVHLMWRWP 764 (1092)
Q Consensus 728 --~~~~~~~~~i~~l~~s~~g~---~l~~~~~dg~i~lw~~~ 764 (1092)
.....+...|.+++|+|+++ .+++++.+|.+.+|++.
T Consensus 377 ~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 377 TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp SCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred CccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 01134778899999999999 89999999999999864
No 51
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.7e-35 Score=358.79 Aligned_cols=299 Identities=18% Similarity=0.252 Sum_probs=253.3
Q ss_pred eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
....|++|++.|++++|+|++..+|++|+.|++|+|||+.++..... .....+.+|...|.+++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s 439 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLS 439 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEEC
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEEC
Confidence 34578999999999999998755899999999999999987643321 0112377999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE---e
Q 001358 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---E 482 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~---~ 482 (1092)
|+|++|++|+.|++|+|||+.++.... .+.+|...|.+++|+|+++ .|++|+.|++|++||.......... .
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence 999999999999999999999986554 6789999999999999999 7999999999999997655433222 4
Q ss_pred cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+|...|.+++|++......+++++.||+|++||++.......+..|...|.+++|+|+|++|++++. ++.|++||+
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~ 590 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL 590 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEET
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 6889999999987665578999999999999999999888899999999999999999999999986 667999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC-----------------CCCC
Q 001358 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------------LPEN 625 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v 625 (1092)
.+++.+..+..+ ..+.+++|+|++.++++++ ++.|++||+.++..+..+..+.. ...+
T Consensus 591 ~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
T 3dm0_A 591 AEGKKLYSLEAN----SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665 (694)
T ss_dssp TTTEEEECCBCS----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCE
T ss_pred CCCceEEEecCC----CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEe
Confidence 999988777543 5799999999987776665 56699999999998887754311 1125
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358 626 PRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
.+++|+|+|++|++|+.||.|++|++.
T Consensus 666 ~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 666 TSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 689999999999999999999999975
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.3e-34 Score=330.84 Aligned_cols=328 Identities=16% Similarity=0.223 Sum_probs=280.9
Q ss_pred eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
..+.+.+|.+.|.. +++++|+ ++++|+.||+|++||+.+++.+.. +.+|...|.+++|+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 168 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR 168 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE
T ss_pred eeEEecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec
Confidence 34678999987643 3556787 699999999999999999987765 77899999999997
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001358 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
+++|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++||+.+++.+..+.+|.
T Consensus 169 --~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 239 (445)
T 2ovr_B 169 --DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHV 239 (445)
T ss_dssp --TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred --CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCc
Confidence 6799999999999999999986554 788999999999996 44 69999999999999999999999999999
Q ss_pred cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
..|.++++ ++.++++++.||.|++||+++......+..+...+.+++| ++.++++++. ++.|++||..++
T Consensus 240 ~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~ 309 (445)
T 2ovr_B 240 AAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETG 309 (445)
T ss_dssp SCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTC
T ss_pred ccEEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCC
Confidence 99999988 5678999999999999999999888899999999999998 8899999986 566999999999
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC-CCCCCceEEEccCCCEEEEEeCCC
Q 001358 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
+.+..+.+|. ..+.++.++ ++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||
T Consensus 310 ~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 382 (445)
T 2ovr_B 310 NCIHTLTGHQ---SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG 382 (445)
T ss_dssp CEEEEECCCC---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CEEEEEcCCc---ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC
Confidence 9999998887 788887774 6799999999999999999999999987632 34568888885 68999999999
Q ss_pred eEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccce
Q 001358 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~ 724 (1092)
.|++|++.+++.+..+...
T Consensus 383 ~v~iwd~~~~~~~~~~~~~------------------------------------------------------------- 401 (445)
T 2ovr_B 383 TVKLWDLKTGEFIRNLVTL------------------------------------------------------------- 401 (445)
T ss_dssp EEEEEETTTCCEEEEEEEC-------------------------------------------------------------
T ss_pred eEEEEECCCCceeeeeecc-------------------------------------------------------------
Confidence 9999999988665544210
Q ss_pred ecccCCccccccEEEEEEecCCcEEEEeecCCe----eEEeeecC
Q 001358 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR 765 (1092)
Q Consensus 725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~----i~lw~~~~ 765 (1092)
....+...|.+++|+|++..+++++.||. +.+||+..
T Consensus 402 ----~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 402 ----ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp ----TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ----ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 00125677889999999999999999887 88888764
No 53
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.6e-34 Score=319.10 Aligned_cols=289 Identities=20% Similarity=0.222 Sum_probs=240.0
Q ss_pred eeecCCCCcEEEEEE-----CC-CCCEEEEEeCCCEEEEEEccCCCCc----cceEEecccccceeEEEeeCCCCcEEEE
Q 001358 390 ALVRDPGVSVNRVVW-----SP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVI 459 (1092)
Q Consensus 390 ~~l~~h~~~V~~l~~-----sp-dg~~las~~~d~~i~iwd~~~~~~~----~~~~~l~~h~~~v~~~~~s~d~~~l~l~ 459 (1092)
..+.+|...|.+++| ++ |+++||+|+.|++|++||+.+++.. .....+.+|...|.+++|+|++. +++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~ 92 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAI 92 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEE
Confidence 358899999999999 77 9999999999999999999865421 23446889999999999999999 899
Q ss_pred EEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEE
Q 001358 460 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMA 536 (1092)
Q Consensus 460 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~ 536 (1092)
+|+.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+... ...... .+...+.+++
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeee
Confidence 999999999999999999999999999999999965 6789999999999999999743 333322 5677899999
Q ss_pred EecCC----------CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001358 537 YSANG----------RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606 (1092)
Q Consensus 537 ~s~dg----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 606 (1092)
|+|++ .++++++. ++.|++|| .++.....+.+|. ..|.+++|+|++++|++|+.||.|++||
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~---~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHE---SNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred eccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCcc---ccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 99987 68888876 67799999 5567777888887 8999999999999999999999999999
Q ss_pred CC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeee--ecc-----------cccccceeeee
Q 001358 607 MN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----------VLSDNLRKLSV 672 (1092)
Q Consensus 607 ~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~-----------~~~~~v~~~~~ 672 (1092)
+. .......+... ..|.+++|+|++.+++++ .|+.+++|++.++.... .+. +|...+.+++|
T Consensus 242 ~~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (343)
T 2xzm_R 242 ILNLTYPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317 (343)
T ss_dssp SSCCSSCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEE
T ss_pred CCCCcccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEE
Confidence 94 44444444322 248999999999888755 57789999998765433 222 45556666666
Q ss_pred cCCcccccccccCCceeecCCCCCCcccceeeccccccceeceee
Q 001358 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 717 (1092)
+ |+|+++++++.||.|++|++..
T Consensus 318 s----------------------p~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 318 N----------------------ALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp C----------------------SSSCCEEEEETTSEEEEEEEEE
T ss_pred C----------------------CCCCeEEEecCCceEEEEEEEc
Confidence 4 7899999999999999999764
No 54
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-36 Score=346.65 Aligned_cols=337 Identities=15% Similarity=0.229 Sum_probs=264.2
Q ss_pred CceEEEEEcCCCC-EEEEE----------eCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001358 579 NSVSVVHFDTAKD-QILAA----------GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 579 ~~v~~~~~~~~~~-~l~~~----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
..+.+++|+|+++ +++++ +.|+.|++||+.++.....+....+...|.+++|+|++++|++++.||.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 3578899999987 88888 889999999999876332222222345699999999999999999999999
Q ss_pred EEECCCC----CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccc
Q 001358 648 ILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 723 (1092)
Q Consensus 648 iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~ 723 (1092)
+|++.+. .....+.
T Consensus 93 vw~~~~~~~~~~~~~~~~-------------------------------------------------------------- 110 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFS-------------------------------------------------------------- 110 (416)
T ss_dssp EECCSSTTSCCCEEEECC--------------------------------------------------------------
T ss_pred Eeecccccccccchhhcc--------------------------------------------------------------
Confidence 9998862 2222222
Q ss_pred eecccCCccccccEEEEEEecC-CcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCC
Q 001358 724 QSLLLPSKVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 802 (1092)
Q Consensus 724 ~~~~~~~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 802 (1092)
+|...|.+++|+|+ +..+++++.||.|++|++......... .... ..... ..|.
T Consensus 111 --------~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~~~--------~~~~~--~~~~ 165 (416)
T 2pm9_A 111 --------NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN-------YTPL--------TPGQS--MSSV 165 (416)
T ss_dssp --------CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT-------CCCB--------CCCCS--CCSS
T ss_pred --------CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc-------cccc--------ccccc--cCCC
Confidence 25666777888887 778888888888888887553210000 0000 00001 1488
Q ss_pred CCeeEEEEecC-CCEEEEEe-CCeEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCCCEEEEEeCCC---eEEEE
Q 001358 803 EAVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGMDDS---TILIY 871 (1092)
Q Consensus 803 ~~v~~~~~s~d-g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~~dg---~v~iw 871 (1092)
..|.+++|+|+ +.++++++ |+.|++||+.+++.+..+..+ ...+.+++|+|++..++++++.|+ .|++|
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~ 245 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW 245 (416)
T ss_dssp CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence 89999999999 78888887 799999999999999998876 788999999994447999999999 99999
Q ss_pred EcCCc-eeeEeec-cccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCC
Q 001358 872 NARSS-EVISKLE-GHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 872 d~~~~-~~~~~l~-~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 948 (1092)
|+.++ +.+..+. +|...|.+++|+| ++++|++++.|+.|++||+.+++. +....++.. .|.+++|+|++
T Consensus 246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-----~~~~~~~~~---~v~~~~~s~~~ 317 (416)
T 2pm9_A 246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ-----LSQFPARGN---WCFKTKFAPEA 317 (416)
T ss_dssp ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE-----EEEEECSSS---CCCCEEECTTC
T ss_pred eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc-----ceeecCCCC---ceEEEEECCCC
Confidence 99986 6778888 8999999999999 999999999999999999998653 333334433 69999999999
Q ss_pred -CEEEE-EeCCcEEEEEcCCceeeeeec----------------------------------cCCCcCEEEEEEecCCCE
Q 001358 949 -TRFLL-VHETHLAIYEAEELTCLKQWF----------------------------------PISSVPISQATFSCDCRM 992 (1092)
Q Consensus 949 -~~la~-~~d~~v~lwd~~~~~~~~~~~----------------------------------~~h~~~v~~l~fs~dg~~ 992 (1092)
.+|++ +.|+.|++||+.++....... ..|..++.+++|||||++
T Consensus 318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 397 (416)
T 2pm9_A 318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL 397 (416)
T ss_dssp TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE
T ss_pred CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE
Confidence 78888 678999999998776433210 115678889999999999
Q ss_pred EEEEeCCCcEEEEECCCC
Q 001358 993 VFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 993 l~t~s~Dg~i~vwd~~~~ 1010 (1092)
|++++.|++|+||++.+.
T Consensus 398 la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 398 VQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ECBCTTSSCBCCBCCCCC
T ss_pred EEEeCCCCeEEEEEeccC
Confidence 999999999999999875
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.2e-34 Score=332.04 Aligned_cols=305 Identities=17% Similarity=0.230 Sum_probs=266.7
Q ss_pred cceeEecccCCCCc-eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEE
Q 001358 324 KTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V-~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
.....++.+|.+.| .+++| +++ ++++|+.||+|++||+.+++.+.. +.+|.+.|.++
T Consensus 111 ~~~~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l 168 (464)
T 3v7d_B 111 VPQRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWAL 168 (464)
T ss_dssp CCEEEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEE
T ss_pred CcceEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEE
Confidence 34567899999886 56666 556 699999999999999999987765 77899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeC--CCCcEEEEEEeCCCcEEEEECCCCce---
Q 001358 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSR--- 477 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~--- 477 (1092)
+|+|++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ +++ ++++|+.|++|++||+.++..
T Consensus 169 ~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~ 242 (464)
T 3v7d_B 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPD 242 (464)
T ss_dssp EECSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC--
T ss_pred EEcCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccc
Confidence 999988 99999999999999999986544 7889999999999995 556 899999999999999987753
Q ss_pred --------------------eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEE
Q 001358 478 --------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 537 (1092)
Q Consensus 478 --------------------~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 537 (1092)
+..+.+|...|.++.. ++.++++++.||.|++||+.+.+....+..+...|.+++|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp ----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ccccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence 5567889999988843 5679999999999999999999999999999999999999
Q ss_pred ecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001358 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
+|+++++++++. ++.|++||..+++.+..+.+|. ..|.++.|+ ++++++++.||.|++||+.++.......
T Consensus 319 ~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 319 DHERKRCISASM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp ETTTTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec
Confidence 999999999986 5669999999999999999888 899999997 4799999999999999999988776665
Q ss_pred CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeee-cccccccceeeeec
Q 001358 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA-AGVLSDNLRKLSVN 673 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~ 673 (1092)
.. ..+..++|+++++++++++ ||.|++||+.+++.+.. ...+...|.+++++
T Consensus 390 ~~---~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 390 HT---NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp CT---TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred CC---CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 32 3477899999999999998 89999999999998875 66788888888885
No 56
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-34 Score=328.48 Aligned_cols=298 Identities=15% Similarity=0.138 Sum_probs=249.6
Q ss_pred cceeEecccCCCCceEEeecCCC-ceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEE
Q 001358 324 KTVAQTLIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg-~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
......+.+|.+.|++++|+|+| + +|++|+.|+.|+|||+.+++...... ..+|...|.++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------~~~h~~~v~~~ 124 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQ-----------------GMGPGDAITGM 124 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEEC-----------------CCSTTCBEEEE
T ss_pred cceEEeccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeee-----------------cCCcCCceeEE
Confidence 45667889999999999999999 6 79999999999999999887665421 34799999999
Q ss_pred EECC-CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001358 403 VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1092)
Q Consensus 403 ~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~ 481 (1092)
+|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++++.|+.|++||+ +++.+..+
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE 200 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence 9999 789999999999999999996 33332222334558899999999999 8999999999999998 68889999
Q ss_pred ecCCcceEEEeecccCCcc-EEEEEecCCeEEEEEcCC----CCceEEecCCCCceEEEEEec-CCCEEEEEecCCCCce
Q 001358 482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGES 555 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~ 555 (1092)
.+|...|.+++|++ ++. ++++++.|+.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++
T Consensus 201 ~~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~ 273 (383)
T 3ei3_B 201 KLHKAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN 273 (383)
T ss_dssp ECSSSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred ccCCCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence 99999999999965 556 999999999999999987 3344444 5788999999999 9999999986 66
Q ss_pred eEEEEeCCCCeEEEEEeecccc--------------CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001358 556 FLVEWNESEGAIKRTYQGLQLQ--------------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1092)
.|++||+.+++....+.+|... ...+..++|+|++++ +++.|+.|++||+.+++.+..+..+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 7999999999888777765411 133445666777666 777999999999999999999987655
Q ss_pred CCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358 622 LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
...+..++|+|++++|++++ |+.|++|++.+
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 55677789999999999997 89999999874
No 57
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.2e-34 Score=329.03 Aligned_cols=299 Identities=13% Similarity=0.128 Sum_probs=257.3
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCC------ceeeeeeeeeecccccceeEEeeecCCCCc
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ------KLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~------~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~ 398 (1092)
.+...+.+|.+.|++++|+| + +|++|+.||+|+|||+.+++ .+.. +.+|...
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------------------~~~h~~~ 64 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYS-------------------HFVHKSG 64 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEE-------------------EECCTTC
T ss_pred hhhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceE-------------------EecCCCc
Confidence 45678899999999999999 4 68999999999999999987 3332 6689999
Q ss_pred EEEEEECCC----C---CEEEEEeCCCEEEEEEccCCCCcc--ceEEeccc-----ccceeEEEee----CCCCcEE-EE
Q 001358 399 VNRVVWSPD----G---SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAH-----VGNVNDLAFS----APCKQIS-VI 459 (1092)
Q Consensus 399 V~~l~~spd----g---~~las~~~d~~i~iwd~~~~~~~~--~~~~l~~h-----~~~v~~~~~s----~d~~~l~-l~ 459 (1092)
|.+++|+|+ | ++|++++.|+.|++||+.+++... ....+..| ...|.+++|+ |+++ . |+
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~ 142 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLV 142 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEE
T ss_pred EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEE
Confidence 999999999 9 999999999999999999887510 03367778 5899999999 9999 7 99
Q ss_pred EEeCCCcEEEEECCC------CceeE-----EEec-------CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc
Q 001358 460 TCGDDKTIKVWDAVT------GSRTY-----SFEG-------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 521 (1092)
Q Consensus 460 s~~~d~~i~vwd~~~------~~~~~-----~~~~-------~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 521 (1092)
+++.|+.|++||+.+ ++.+. .+.+ |...|.+++|++ ++ ++++++.||.|++||+++...
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~ 219 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRP 219 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEE
T ss_pred EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCce
Confidence 999999999999998 77776 7744 889999999965 66 999999999999999999888
Q ss_pred eEEecC---C---CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee-------------ccccCCceE
Q 001358 522 RVDYDA---P---GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------LQLQHNSVS 582 (1092)
Q Consensus 522 ~~~~~~---~---~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------~~~~~~~v~ 582 (1092)
...+.. | ...+.+++|+|++++|++++.++ ..+.|++||+.+++.+..+.+ |. ..|.
T Consensus 220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~ 295 (397)
T 1sq9_A 220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVM 295 (397)
T ss_dssp EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEE
T ss_pred eEEEeccccccccCCccceEEECCCCCEEEEEecCC-CCceEEEEECCCCcccceeccCcccccccccccccC---CcEE
Confidence 888888 7 88999999999999999998620 017899999999999999988 66 8999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe------CC-------------CCCCCCceEEEccCC---------
Q 001358 583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID------AG-------------GGLPENPRICFNKNG--------- 634 (1092)
Q Consensus 583 ~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~~--------- 634 (1092)
+++|+|++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++
T Consensus 296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 375 (397)
T 1sq9_A 296 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADL 375 (397)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccc
Confidence 99999999999999999999999999999999988 43 014569999999998
Q ss_pred -CEEEEEeCCCeEEEEECCCC
Q 001358 635 -TLLAVIANENRIKILETPES 654 (1092)
Q Consensus 635 -~~l~~~~~dg~i~iw~~~~~ 654 (1092)
++|++++.||.|++|++.++
T Consensus 376 ~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 376 NESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp SCEEEEEETTTEEEEEEEEC-
T ss_pred cceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998765
No 58
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-36 Score=348.51 Aligned_cols=341 Identities=10% Similarity=0.058 Sum_probs=249.9
Q ss_pred eeEecccCCCCceEEeecCCC---------ceEEEE-------------------EcCcCcEEEEecCCCCceeeeeeee
Q 001358 326 VAQTLIEGSSSPMSMDFHPVQ---------HTLLLV-------------------GTNVGDTGLWDVNSGQKLFIRNFKV 377 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg---------~~llas-------------------g~~d~~i~iwd~~~~~~~~~~~~~~ 377 (1092)
+..++. +.+.|++|+|+|++ + +||+ |+.|++|+|||+.+++.....
T Consensus 126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~---- 199 (524)
T 2j04_B 126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK---- 199 (524)
T ss_dssp CEEEEE-CCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEEE----
T ss_pred ceEEEE-CCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE----
Confidence 333444 45689999999886 4 4555 456788999999887643210
Q ss_pred eecccccceeEEeeecCCCCcEEEEEECCC------CCEEEEEeCCCEEEEEEccCCCCc--------cceEEecccccc
Q 001358 378 WDIGACSMLFKTALVRDPGVSVNRVVWSPD------GSLLGVAYSKHIVQLYAYHGGSDA--------RQQLEIDAHVGN 443 (1092)
Q Consensus 378 ~d~~~~~~~~~~~~l~~h~~~V~~l~~spd------g~~las~~~d~~i~iwd~~~~~~~--------~~~~~l~~h~~~ 443 (1092)
...+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+.++... .....+.+|...
T Consensus 200 -----------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~ 268 (524)
T 2j04_B 200 -----------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL 268 (524)
T ss_dssp -----------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC
T ss_pred -----------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC
Confidence 1125568899999999997 679999999999999999877532 123367899999
Q ss_pred eeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEecCCcceEEEeecccCCc-cEEEEEecCCeEEEEEcCCCCc
Q 001358 444 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGA 521 (1092)
Q Consensus 444 v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~ 521 (1092)
|++++|++++ .|++|+.||+|++||+.++. ....+.+|...|.++++...+++ .+|++++.||+|++||+++.+.
T Consensus 269 v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 269 ITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp EEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred EEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 9999999864 59999999999999999874 45678999999999954335566 7999999999999999988766
Q ss_pred eEEecCCC--CceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC
Q 001358 522 RVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1092)
Q Consensus 522 ~~~~~~~~--~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 599 (1092)
...+..+. ..+.+++|+|+++.+++++. ++.|++||++++.++..+.+|. +.|.+++|+|+++.|++|+.|
T Consensus 346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~~~~l~gH~---~~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFAVHPLVSRE---TTITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp HCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTCCEEEEECS---SCEEEEECCSSCCBCEEEETT
T ss_pred ccccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccccceeeecCC---CceEEEEeCCCCCeEEEEECC
Confidence 55554443 35788999999999988865 6679999999999888898887 899999999999999999999
Q ss_pred CeEEEEECCCCceEEEEeCC---CCCCCCceEEEccCCCEEEEEeCCCeEEEEECC-CCCeeeecccccccceeeeecCC
Q 001358 600 HVIKIWDMNKVQLLTTIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPI 675 (1092)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~ 675 (1092)
|+|++||+..+ .+...... .....+..++|+|+++.+. ... .+.+|... ++..+..+.+|...|.+++|+|+
T Consensus 419 gtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~ 494 (524)
T 2j04_B 419 GSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNET 494 (524)
T ss_dssp TEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCS
T ss_pred CEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCC
Confidence 99999998654 21111100 0111356889999998553 222 23344332 45677788899999999999854
Q ss_pred cccccccccCCceeecCCCCCCcccceeeccccccceecee
Q 001358 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1092)
+ +.+..+++|+.+|.|+||++.
T Consensus 495 ~-------------------~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 495 S-------------------AGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp T-------------------TTTTEEEEECTTSEEEEEECS
T ss_pred C-------------------CccHHHHhhccCceEEEEEcc
Confidence 2 235689999999999999976
No 59
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=318.61 Aligned_cols=292 Identities=12% Similarity=0.099 Sum_probs=259.4
Q ss_pred eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
....|.+|++.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 83 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVD 83 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred ccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEc
Confidence 3467899999999999999998 789999999999999999987765 67899999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC-----CcEEEEECCCCc----
Q 001358 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGS---- 476 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~~---- 476 (1092)
|++++|++++.|+.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~ 157 (369)
T 3zwl_B 84 CFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHE 157 (369)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCcccee
Confidence 999999999999999999999987655 344 888999999999999 78999888 999999988664
Q ss_pred -------eeEEEecCCc--ceEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEecCCCEEEE
Q 001358 477 -------RTYSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 477 -------~~~~~~~~~~--~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
.+..+..|.. .+.+++|++ ++.+|++++.||.|++||+.+ ......+..+...|.+++|+|++++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 158 LTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT 235 (369)
T ss_dssp EEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE
Confidence 3455566666 899999965 668999999999999999998 6667788889999999999999999999
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC--------------eEEEEECCCCce
Q 001358 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------------VIKIWDMNKVQL 612 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--------------~i~iwd~~~~~~ 612 (1092)
++. ++.|++||+.+++.+..+.. . ..+..++|+|+++++++++.++ .+++||..+++.
T Consensus 236 ~~~----d~~i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 307 (369)
T 3zwl_B 236 SSR----DTNSFLVDVSTLQVLKKYET-D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE 307 (369)
T ss_dssp EET----TSEEEEEETTTCCEEEEEEC-S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred ecC----CceEEEEECCCCceeeeecC-C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence 976 66799999999999888873 3 6899999999999999999888 899999999999
Q ss_pred EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 001358 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
+..+..+. ..|.+++|+|++++|++++.||.|++|++..+.
T Consensus 308 ~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 308 IGRVQGHF--GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred hhheeccc--CcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 99988664 469999999999999999999999999998653
No 60
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=310.99 Aligned_cols=293 Identities=20% Similarity=0.269 Sum_probs=256.1
Q ss_pred cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
....++|.+|.+.|++++| |+++ +|++|+.||.|+|||+.+++.... +..|...|.+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~ 66 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC 66 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence 4677899999999999999 9998 689999999999999988776653 556899999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001358 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 483 (1092)
|+|++++|++++.|+.|++|++...........+.+|...|.+++| +++ .+++++.|+.|++|| .++.+..+..
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~ 140 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA 140 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence 9999999999999999999999876554555578899999999999 456 799999999999999 7888889999
Q ss_pred CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
|...+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||.
T Consensus 141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~ 212 (313)
T 3odt_A 141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDM 212 (313)
T ss_dssp CSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEET
T ss_pred CCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEEC
Confidence 9999999999763 557999999999999999 3445555555 788999999999999 777765 667999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
.+++.+..+.+|. ..|.+++|+|++ .+++++.||.|++||+.+++.+..+..+. ..+.+++|+|+++ +++++.
T Consensus 213 ~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~~~~~~ 285 (313)
T 3odt_A 213 HTGDVLRTYEGHE---SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA--ISIWSVDCMSNGD-IIVGSS 285 (313)
T ss_dssp TTCCEEEEEECCS---SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS--SCEEEEEECTTSC-EEEEET
T ss_pred CchhhhhhhhcCC---ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC--ceEEEEEEccCCC-EEEEeC
Confidence 9999999999887 899999999998 69999999999999999999999998764 3689999999998 667999
Q ss_pred CCeEEEEECCCCCeee
Q 001358 643 ENRIKILETPESNSVD 658 (1092)
Q Consensus 643 dg~i~iw~~~~~~~~~ 658 (1092)
||.|++|++.+++...
T Consensus 286 dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 286 DNLVRIFSQEKSRWAS 301 (313)
T ss_dssp TSCEEEEESCGGGCCC
T ss_pred CCcEEEEeCCCCceee
Confidence 9999999998775543
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.9e-33 Score=322.66 Aligned_cols=319 Identities=18% Similarity=0.280 Sum_probs=271.2
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +. ++++|+.|++|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 6789887543 355579999999999999999999987554 788999999999998 44 799999999999999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+.+++.+..+.+|...|.+++++ +..+++++.||.|++||+.+.+....+..+...+.++++ +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 99999999999999999999983 358999999999999999999998899999999999988 7889999886
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
++.|++||..+++.+..+.+|. ..|.++.| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.+
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~- 327 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL- 327 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE-
T ss_pred --CCEEEEEECCCCcEeEEecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE-
Confidence 5679999999999999998887 88999999 788999999999999999999999988876533 4555554
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccc
Q 001358 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1092)
+++++++++.||.|++||+.+++.+..+..+
T Consensus 328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------------ 358 (445)
T 2ovr_B 328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGP------------------------------------------------ 358 (445)
T ss_dssp -ETTEEEEEETTSCEEEEETTTCCEEEEECST------------------------------------------------
T ss_pred -eCCEEEEEeCCCeEEEEECCCCcEEEEEccC------------------------------------------------
Confidence 5779999999999999998765433222100
Q ss_pred eeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCce
Q 001358 712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 791 (1092)
Q Consensus 712 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1092)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEe-----cCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001358 792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDD 865 (1092)
Q Consensus 792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1092)
..|...|.+++|+ ++++++++ ||.|++||+.+++.+..+ ..|.+.|.+++|+| ++.++|+|+.|
T Consensus 359 -------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~d 428 (445)
T 2ovr_B 359 -------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRN 428 (445)
T ss_dssp -------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSS
T ss_pred -------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccC
Confidence 0155667777774 57888887 789999999999888887 46788999999999 89999999999
Q ss_pred Ce----EEEEEcCC
Q 001358 866 ST----ILIYNARS 875 (1092)
Q Consensus 866 g~----v~iwd~~~ 875 (1092)
|+ |.+||+..
T Consensus 429 g~~~~~l~v~df~~ 442 (445)
T 2ovr_B 429 GTEETKLLVLDFDV 442 (445)
T ss_dssp SSSCCEEEEEECCC
T ss_pred CCCccEEEEEECCC
Confidence 97 99999875
No 62
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.2e-33 Score=325.56 Aligned_cols=319 Identities=18% Similarity=0.263 Sum_probs=270.7
Q ss_pred ecCCCCcE-EEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358 392 VRDPGVSV-NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 392 l~~h~~~V-~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
+.+|...| .++.| ++++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|++ .+++|+.||+|++|
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 188 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEEE
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEE
Confidence 66898875 55555 67899999999999999999986554 788999999999999987 59999999999999
Q ss_pred ECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-----------------------eEEecC
Q 001358 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-----------------------RVDYDA 527 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----------------------~~~~~~ 527 (1092)
|+.+++.+..+.+|...|.++++.+.+++.++++++.||.|++||+..... ...+..
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 999999999999999999999999888889999999999999999987653 234556
Q ss_pred CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
+...+.++ +++++++++++. ++.|++||+.+++.+..+.+|. ..|.+++|+|+++++++|+.||.|++||+
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~sg~~dg~i~vwd~ 339 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHT---DRIYSTIYDHERKRCISASMDTTIRIWDL 339 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred ccceEEEE--cCCCCEEEEEeC----CCeEEEEECCCCcEEEEecCCC---CCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 66666655 788999999986 5669999999999999999887 89999999999999999999999999999
Q ss_pred CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCc
Q 001358 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1092)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 687 (1092)
.+++.+..+..|. ..|.+++|+ ++++++++.||.|++||+.+.......
T Consensus 340 ~~~~~~~~~~~h~--~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~--------------------------- 388 (464)
T 3v7d_B 340 ENGELMYTLQGHT--ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY--------------------------- 388 (464)
T ss_dssp TTTEEEEEECCCS--SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE---------------------------
T ss_pred CCCcEEEEEeCCC--CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee---------------------------
Confidence 9999999987664 468888887 689999999999999998753211000
Q ss_pred eeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCc
Q 001358 688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1092)
Q Consensus 688 ~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~ 767 (1092)
T Consensus 389 -------------------------------------------------------------------------------- 388 (464)
T 3v7d_B 389 -------------------------------------------------------------------------------- 388 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEE-ecCCCCCe
Q 001358 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT-IMPPSPTA 846 (1092)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~-~~~~~~~i 846 (1092)
.+...+..++|++++++++++++|.|++||+.+++.+.. +..|...|
T Consensus 389 --------------------------------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v 436 (464)
T 3v7d_B 389 --------------------------------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQI 436 (464)
T ss_dssp --------------------------------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEE
T ss_pred --------------------------------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcE
Confidence 033445678899999999999999999999999999886 66788999
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001358 847 TSLAFNPHDNNVIAIGMDDSTILIYN 872 (1092)
Q Consensus 847 ~~l~~s~~d~~~lasg~~dg~v~iwd 872 (1092)
.+++|+ ++.++++++.||.+.+|-
T Consensus 437 ~~v~~~--~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 437 WSVNFK--GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEEE--TTEEEEEEEETTEEEEEE
T ss_pred EEEEec--CCEEEEEEEeCCeEEEEE
Confidence 999997 466777778888666554
No 63
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-35 Score=340.28 Aligned_cols=350 Identities=10% Similarity=0.043 Sum_probs=242.7
Q ss_pred CCCcEEEEEECCCC---------CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC
Q 001358 395 PGVSVNRVVWSPDG---------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1092)
Q Consensus 395 h~~~V~~l~~spdg---------~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~ 465 (1092)
+.+.|.+++|+|++ ++||+|+.++. + ...+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C------------------Cccchhhh--hhccCCCCc
Confidence 57899999999987 89999986642 0 01378998 799999999
Q ss_pred cEEEEECCCCcee----EEEecCCcceEEEeeccc----CCccEEEEEecCCeEEEEEcCCCCc-----------eEEec
Q 001358 466 TIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA-----------RVDYD 526 (1092)
Q Consensus 466 ~i~vwd~~~~~~~----~~~~~~~~~v~~i~~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~ 526 (1092)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887653 456778899999999886 3467999999999999999976542 23567
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe-EEEEEeeccccCCceEEE--EEcCCC-CEEEEEeCCCeE
Q 001358 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVV--HFDTAK-DQILAAGDDHVI 602 (1092)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~s~dg~i 602 (1092)
.|...|.+++|++++ .|++++. ++.|++||+.++. ....+.+|. ..|.++ +|+|++ .+|++++.|++|
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~---~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHD---SYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSS---SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeeccc---ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 788899999999865 7888876 7789999999774 445677877 899999 578887 889999999999
Q ss_pred EEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccccccc
Q 001358 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 682 (1092)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (1092)
++||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++..+..+.+
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-------------------- 395 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-------------------- 395 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--------------------
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--------------------
Confidence 999999887766655443223478999999999999999999999999987654443333
Q ss_pred ccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEee
Q 001358 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 762 (1092)
Q Consensus 683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~ 762 (1092)
|.+.|.+++|+|+|+.|++++.||.+++|+
T Consensus 396 --------------------------------------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 396 --------------------------------------------------RETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp --------------------------------------------------CSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred --------------------------------------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 555677777777777777777777777776
Q ss_pred ecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcC-CceeeEEecC
Q 001358 763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP 841 (1092)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~-~~~~~~~~~~ 841 (1092)
..... +....+. ....+...+.+++|+|+++.+.. .+.+.+|+.. ++..+..+.+
T Consensus 426 ~~~~~---------------~~~~~~~-------~~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~g 481 (524)
T 2j04_B 426 AARRL---------------LHGIKNS-------SATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDA 481 (524)
T ss_dssp SCSST---------------TTCC-------------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------
T ss_pred chHhh---------------ccccccC-------ccceeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecC
Confidence 43210 0000000 00002234678899999985532 2233344433 5677888999
Q ss_pred CCCCeEEEEEcCCCC---CEEEEEeCCCeEEEEEcCC
Q 001358 842 PSPTATSLAFNPHDN---NVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 842 ~~~~i~~l~~s~~d~---~~lasg~~dg~v~iwd~~~ 875 (1092)
|...|.+++|+| ++ .++|+|+.||.|+||++..
T Consensus 482 h~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 482 HGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 999999999999 64 5999999999999999874
No 64
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=321.59 Aligned_cols=300 Identities=12% Similarity=0.209 Sum_probs=249.7
Q ss_pred CcceeEecccCCCCceEEeecCCCceEEEEEcC---cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcE
Q 001358 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~---d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
|......+.+|.+.|.+++|+|++..++++|+. |+.|+|||+.+++..... ..+|...|
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v 68 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPI 68 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcE
Confidence 445567778999999999999999878889987 999999999998765431 22589999
Q ss_pred EEEEECCC---CCEEEEEeCCCEEEEEEccCCC-CccceEEecccccceeEEE------eeCCCCcEEEEEEeCCCcEEE
Q 001358 400 NRVVWSPD---GSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLA------FSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 400 ~~l~~spd---g~~las~~~d~~i~iwd~~~~~-~~~~~~~l~~h~~~v~~~~------~s~d~~~l~l~s~~~d~~i~v 469 (1092)
.+++|+|+ |++|++|+.|+.|++||+.+++ .+. .+.+|...|.+++ |+|+++ .|++++.|+.|++
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~v 143 (357)
T 3i2n_A 69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKV 143 (357)
T ss_dssp EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEE
T ss_pred EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEE
Confidence 99999998 7999999999999999999886 443 6789999999995 568898 8999999999999
Q ss_pred EECCCCc-eeEEEecCCc----ceEEEeec--ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEec---
Q 001358 470 WDAVTGS-RTYSFEGHGA----PVYSLCPH--AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--- 539 (1092)
Q Consensus 470 wd~~~~~-~~~~~~~~~~----~v~~i~~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--- 539 (1092)
||+.+++ .+..+..|.+ .+.+++|. .++++.++++++.||.|++||+++...... ..+...+.+++|+|
T Consensus 144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSS
T ss_pred EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCC
Confidence 9999987 7788876665 78888742 245778999999999999999998776443 55677999999999
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe-----eccccCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCC---
Q 001358 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV--- 610 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~--- 610 (1092)
++.++++++. ++.|++||..+++....+. +|. ..|.+++|+|+++ ++++++.||.|++||+.++
T Consensus 223 ~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 223 SMNKLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp SCCEEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred CCCEEEEECC----CCeEEEEeCcCCCcccceeeeccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 9999999876 6679999999887665554 555 8999999999998 7999999999999998754
Q ss_pred ----------------ceEEEEeCCCCCCCCceEEEccCCCEEE-EEeCCCeEEEEECCCCC
Q 001358 611 ----------------QLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESN 655 (1092)
Q Consensus 611 ----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~ 655 (1092)
+.+..+..+ ...|.+++|+|++++|+ +++.||.|++|++.+..
T Consensus 296 ~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 296 SKKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp --CCTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ccccCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 345555554 45699999999999998 79999999999998653
No 65
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9.9e-33 Score=307.85 Aligned_cols=299 Identities=21% Similarity=0.304 Sum_probs=250.5
Q ss_pred ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCCc--cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEE
Q 001358 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~--~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 468 (1092)
|.||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i~ 111 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTLR 111 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccce
Confidence 8899999999999997 689999999999999999876543 23446789999999999999999 899999999999
Q ss_pred EEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEecCCC--EEE
Q 001358 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGR--RLF 545 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~--~l~ 545 (1092)
+|+...+........+...+..+.+.+ ++.+|++++.|+.+++||........ ....+...+..++|++++. .++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 112 LWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred EEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 999999999988888888888888754 56799999999999999987655433 4556778899999998764 566
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCC
Q 001358 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
+++. ++.|++||..+++.+..+.+|. ..|.+++|+|++++|++|+.||.|++||+.+++.+..+..+ ..+
T Consensus 190 s~~~----d~~i~i~d~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v 259 (340)
T 4aow_A 190 SCGW----DKLVKVWNLANCKLKTNHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG---DII 259 (340)
T ss_dssp EEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS---SCE
T ss_pred EEcC----CCEEEEEECCCCceeeEecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC---ceE
Confidence 6665 6679999999999999999888 89999999999999999999999999999999999888765 358
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeec
Q 001358 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1092)
.+++|+|++.++ +++.|+.|++||+.++..+..+.....
T Consensus 260 ~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------------------------------- 298 (340)
T 4aow_A 260 NALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVI---------------------------------------- 298 (340)
T ss_dssp EEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC------------------------------------------
T ss_pred EeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccce----------------------------------------
Confidence 999999987655 556789999999987765544432110
Q ss_pred cccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCC
Q 001358 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 766 (1092)
Q Consensus 706 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~ 766 (1092)
......|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus 299 ---------------------~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 299 ---------------------STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp --------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred ---------------------eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 0011237788999999999999999999999999998754
No 66
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-34 Score=328.55 Aligned_cols=274 Identities=12% Similarity=0.181 Sum_probs=212.4
Q ss_pred CCcceeEec-ccCCCCceEEeecC-CCceEEEEEcCcCcEEEEecCC---CCceeeeeeeeeecccccceeEEeeecCCC
Q 001358 322 FPKTVAQTL-IEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS---GQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1092)
Q Consensus 322 ~p~~~~~~l-~~h~~~V~~v~~sp-dg~~llasg~~d~~i~iwd~~~---~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~ 396 (1092)
.....+..+ .+|.+.|++++|+| +|+ +||+|+.||+|+|||+.+ +..... ....+|.
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-----------------~~~~~h~ 111 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS-----------------SLTYDCS 111 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC-----------------SEEEECS
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce-----------------eeeccCC
Confidence 335667777 89999999999999 998 799999999999999987 432210 0011499
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEcc---CCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC
Q 001358 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYH---GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~---~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~ 473 (1092)
..|.+++|+|++++|++|+.|+.|++||++ +++... .+.+| .+..+.|+|++
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~-------------------- 166 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG-------------------- 166 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS--------------------
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc--------------------
Confidence 999999999999999999999999999995 544332 34444 67777777643
Q ss_pred CCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCceEEEEEecCCCEEEEEecCC
Q 001358 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+...+.++.+...+++.+|++++.||.|++||+++.+....+.. |...|.+++|+|++++|++++.
T Consensus 167 ----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-- 234 (437)
T 3gre_A 167 ----------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-- 234 (437)
T ss_dssp ----------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET--
T ss_pred ----------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC--
Confidence 22334445544566788999999999999999999998888887 6789999999999999999987
Q ss_pred CCceeEEEEeCCCCeEEEEEe-eccccCCceEEEEEcC----CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC-----
Q 001358 552 EGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDT----AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----- 621 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~----~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----- 621 (1092)
++.|++||+++++.+..+. .+. ..|.+++|+| ++.++++++.||.|++||+.+++.+..+..+..
T Consensus 235 --dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 309 (437)
T 3gre_A 235 --RGIIDIWDIRFNVLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSME 309 (437)
T ss_dssp --TSCEEEEETTTTEEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGG
T ss_pred --CCeEEEEEcCCccEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccc
Confidence 5679999999999988886 544 6899996654 577999999999999999999999988875532
Q ss_pred -------------------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCe
Q 001358 622 -------------------LPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1092)
Q Consensus 622 -------------------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 656 (1092)
...|.+++|+ ++++|++++.|+.|++||+.+++.
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 310 HFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp GGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred eecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence 2235555665 455666666666666666655433
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.6e-34 Score=321.63 Aligned_cols=295 Identities=16% Similarity=0.218 Sum_probs=247.8
Q ss_pred EecccCCCCceEEeecCC---CceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 328 QTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spd---g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
..+.+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.... ......|...|.+++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~ 77 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAW 77 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEe
Confidence 455699999999999984 44356666666799999999887665321 1113347889999999
Q ss_pred CCC----CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeC-CCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358 405 SPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 405 spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
+|+ |++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.|+.|++||+.+++.+.
T Consensus 78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~ 152 (366)
T 3k26_A 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVA 152 (366)
T ss_dssp EECTTTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEE
Confidence 999 6799999999999999999986554 6778999999999999 788 89999999999999999999999
Q ss_pred EE---ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe----------------------------cCC
Q 001358 480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----------------------------DAP 528 (1092)
Q Consensus 480 ~~---~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----------------------------~~~ 528 (1092)
.+ .+|...|.+++|++ ++.+|++++.||.|++||+++.+....+ ..+
T Consensus 153 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 3k26_A 153 IFGGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH 230 (366)
T ss_dssp EECSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred EecccccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence 88 68999999999965 6689999999999999999876543322 237
Q ss_pred CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE--------------EEEEeeccccCCceEEEEEcCC--CCE
Q 001358 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--------------KRTYQGLQLQHNSVSVVHFDTA--KDQ 592 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~--~~~ 592 (1092)
...|.+++|+ ++++++++. ++.|++||+.++.. +..+.+|. ..|.+++|+|+ +++
T Consensus 231 ~~~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 231 RNYVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ---CDIWYMRFSMDFWQKM 301 (366)
T ss_dssp SSCCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS---CCSSCCCCEECTTSSE
T ss_pred cceEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccC---CcEEEEEEcCCCCCcE
Confidence 7889999998 778888875 67799999988744 66777776 78999999999 999
Q ss_pred EEEEeCCCeEEEEECCCCc----eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358 593 ILAAGDDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
+++++.||.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999875 44467666545679999999999999999999999999975
No 68
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.8e-33 Score=312.70 Aligned_cols=203 Identities=13% Similarity=0.127 Sum_probs=171.7
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001358 801 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1092)
+...+.+++|||||+++++++ |++|+|||+.+++++..+. |...|.+++|+| |+++|++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556688999999999988765 6899999999999998886 778899999999 99999999855 56677777766
Q ss_pred eeE--eeccccCCeEEEEEcCCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEE
Q 001358 878 VIS--KLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951 (1092)
Q Consensus 878 ~~~--~l~~h~~~V~~l~~spdg~~l~s~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 951 (1092)
.+. ...+|...|.+++|+||++++++++.|+ .+++|++......... .....++.. .|.+++|||||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~---~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-SKQVTNRFK---GITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-EEEEESSCS---CEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-eeeecCCCC---CeEeEEECCCCCce
Confidence 543 4456999999999999999999999887 6888998875433221 223334433 69999999999999
Q ss_pred EE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001358 952 LL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 952 a~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~ 1010 (1092)
|+ +.|++|+|||+.+++++..+..+|...|++++|||||++|||||.|++|+||+++..
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99 578999999999999999888899999999999999999999999999999999754
No 69
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3e-34 Score=331.18 Aligned_cols=303 Identities=17% Similarity=0.195 Sum_probs=239.1
Q ss_pred eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
......+|...|+|++|+|.+..+||+|+.||+|+|||+.+++...... +.+|.+.|++|+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-----------------~~gH~~~V~~l~f~ 173 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-----------------GIGAGGSITGLKFN 173 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-----------------CCSSSCCCCEEEEC
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-----------------ccCCCCCEEEEEEe
Confidence 3456678999999999999654489999999999999999886554311 56899999999999
Q ss_pred C-CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001358 406 P-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 406 p-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
| ++++|++|+.|++|++||++++. .........+...+.+++|+|+++ +|++|+.||.|++||++ ++.+..+.+|
T Consensus 174 p~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h 249 (435)
T 4e54_B 174 PLNTNQFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMH 249 (435)
T ss_dssp SSCTTEEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCC
T ss_pred CCCCCEEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecc
Confidence 8 78999999999999999998753 222212223445688999999999 89999999999999975 5667888999
Q ss_pred CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEe
Q 001358 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1092)
...|.+++|++.. ..++++++.|+.|++||++...... ....|...|.+++|+|+|++|++++. ++.|++||
T Consensus 250 ~~~v~~v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd 324 (435)
T 4e54_B 250 KKKVTHVALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYS 324 (435)
T ss_dssp SSCEEEEEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEE
T ss_pred cceEEeeeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEE
Confidence 9999999997653 3588999999999999998766543 33567789999999999999999986 66799999
Q ss_pred CCCCeEEEEEeeccccC---CceEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCceEEEEeCCCCCCCCc
Q 001358 562 ESEGAIKRTYQGLQLQH---NSVSVVHFDTAKDQILAAG------------DDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1092)
..++.....+..|.... ..+..+.|+|++..+++++ .++.|++||..+++.+..+..+. ...|.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~ 403 (435)
T 4e54_B 325 ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGIS 403 (435)
T ss_dssp SSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCC
T ss_pred CCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEE
Confidence 99998887776654111 1233456777777776654 34679999999999988875433 34577
Q ss_pred eE-EEccCCCEEEEEeCCCeEEEEECCCCCe
Q 001358 627 RI-CFNKNGTLLAVIANENRIKILETPESNS 656 (1092)
Q Consensus 627 ~v-~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 656 (1092)
++ +|+|+|++|++|+ |+.|+||++.+++.
T Consensus 404 s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 404 SLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 76 6999999999876 78999999988754
No 70
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.3e-33 Score=315.21 Aligned_cols=291 Identities=12% Similarity=0.073 Sum_probs=246.6
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCC--ceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+..|.+.|++++|+|||+ +|++|+.|+.|+|||+.+++ .+.. +.+|...|.+++|+|+
T Consensus 4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 63 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPD 63 (372)
T ss_dssp EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETT
T ss_pred ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCC
Confidence 456889999999999998 78999999999999999886 3332 6689999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce---eEEE-ec
Q 001358 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSF-EG 483 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~-~~ 483 (1092)
+++|++++.|+.|++||+.+++... ...+..|...|.+++|+|+++ ++++++.|+.|++||+.+++. ...+ .+
T Consensus 64 ~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 140 (372)
T 1k8k_C 64 SNRIVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKP 140 (372)
T ss_dssp TTEEEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecc
Confidence 9999999999999999998875332 224567999999999999999 899999999999999998873 3333 67
Q ss_pred CCcceEEEeecccCCccEEEEEecCCeEEEEEcC------------------CCCceEEecCCCCceEEEEEecCCCEEE
Q 001358 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------------SLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~------------------~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
|...|.+++|++ ++.+|++++.||.|++||+. .......+..+...+.+++|+|++++|+
T Consensus 141 ~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 141 IRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp CCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 899999999965 66899999999999999954 4566677778888999999999999999
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC--CceE----------
Q 001358 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLL---------- 613 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~~---------- 613 (1092)
+++. ++.|++||..+++.+..+..|. ..+.+++|+|++.+++++ .|+.|++|++.+ +...
T Consensus 219 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 219 WVSH----DSTVCLADADKKMAVATLASET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp EEET----TTEEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred EEeC----CCEEEEEECCCCceeEEEccCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 9986 6679999999999999999877 899999999999877777 999999999987 4311
Q ss_pred ----------------------------EEEeCCCCCCCCceEEEc-cCC---CEEEEEeCCCeEEEEECCCC
Q 001358 614 ----------------------------TTIDAGGGLPENPRICFN-KNG---TLLAVIANENRIKILETPES 654 (1092)
Q Consensus 614 ----------------------------~~~~~~~~~~~v~~v~~s-~~~---~~l~~~~~dg~i~iw~~~~~ 654 (1092)
..+. .++...|.+++|. ++| .+|++++.||.|++|++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred chhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 1111 2445679999866 566 99999999999999998754
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=321.89 Aligned_cols=348 Identities=11% Similarity=0.123 Sum_probs=242.8
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEeC-----------CCCC
Q 001358 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGL 622 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~ 622 (1092)
..+++|+...++....+.+|. ..|.+++|+| +++++++++.||.|++||+.++.....+.. ..+.
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHG---GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCS---SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred CcceeeccccCcceeeeeccC---CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 346778888888888888877 9999999999 999999999999999999998765444321 1244
Q ss_pred CCCceEEEcc-CCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccc
Q 001358 623 PENPRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 623 ~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
..|.+++|+| ++.++++++.||.|++|++.+++....+.
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------------------------- 139 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---------------------------------------- 139 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----------------------------------------
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----------------------------------------
Confidence 5789999999 77899999999999999987653222111
Q ss_pred eeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCc
Q 001358 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1092)
Q Consensus 702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~ 781 (1092)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCceeeecCCCCCCCCCeeEEEEec---CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC
Q 001358 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 857 (1092)
Q Consensus 782 ~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~---dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~ 857 (1092)
+...+.++++++ ++.++++++ ++.|++||+.+++.+..+..|...|++++|+| ++.
T Consensus 140 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 199 (408)
T 4a11_B 140 -------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYD 199 (408)
T ss_dssp -------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCT
T ss_pred -------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCC
Confidence 222344445544 445777776 68999999999999999999999999999999 666
Q ss_pred -EEEEEeCCCeEEEEEcCCce-eeEee---------------ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 001358 858 -VIAIGMDDSTILIYNARSSE-VISKL---------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 920 (1092)
Q Consensus 858 -~lasg~~dg~v~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~ 920 (1092)
++++|+.||.|++||+.++. .+..+ .+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence 69999999999999998765 33443 57999999999999999999999999999999998663
Q ss_pred eeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCC
Q 001358 921 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg 1000 (1092)
.............. .....+.....+.+++++.++.|++||+.+++.+.. +.+|...|.+++|+|||++|++++.||
T Consensus 280 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg 356 (408)
T 4a11_B 280 TLVNYGKVCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCCVFQSNFQELYSGSRDC 356 (408)
T ss_dssp CCCCCCCCCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE-ECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred ceeccccccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceee-eccCCCeEEEEEEcCCCCEEEEECCCC
Confidence 32111111111111 123334444556666668999999999999999887 568999999999999999999999999
Q ss_pred cEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358 1001 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1001 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.|++||+.+++.+....... ....+.|.....+.+.+.++.+++|+.+
T Consensus 357 ~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 357 NILAWVPSLYEPVPDDDETT-------------TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CEEEEEECC----------------------------------------------------
T ss_pred eEEEEeCCCCCccCCCCceE-------------eccccccccceeecccCccCceeecCCc
Confidence 99999999998775443111 1122333345677888899999999875
No 72
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.7e-33 Score=324.84 Aligned_cols=303 Identities=12% Similarity=0.117 Sum_probs=232.4
Q ss_pred EEEEeeccccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEEEeCCCe
Q 001358 568 KRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENR 645 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~ 645 (1092)
.....+|. ..|++++|+|. ++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++++|++++.||+
T Consensus 112 ~~~~~~~~---~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 112 LQKAAPFD---RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp CCEEEECS---SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred cccCCCCC---CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 34455555 78999999994 5789999999999999999887766666666667899999998 7899999999999
Q ss_pred EEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCcccee
Q 001358 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1092)
Q Consensus 646 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 725 (1092)
|++||+.++.... +
T Consensus 189 v~iwd~~~~~~~~-~----------------------------------------------------------------- 202 (435)
T 4e54_B 189 TRLQDFKGNILRV-F----------------------------------------------------------------- 202 (435)
T ss_dssp EEEEETTSCEEEE-E-----------------------------------------------------------------
T ss_pred EEEeeccCCceeE-E-----------------------------------------------------------------
Confidence 9999976431100 0
Q ss_pred cccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCe
Q 001358 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805 (1092)
Q Consensus 726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v 805 (1092)
... + .+...+
T Consensus 203 ----------------~~~----------~--------------------------------------------~~~~~~ 212 (435)
T 4e54_B 203 ----------------ASS----------D--------------------------------------------TINIWF 212 (435)
T ss_dssp ----------------ECC----------S--------------------------------------------SCSCCC
T ss_pred ----------------ecc----------C--------------------------------------------CCCccE
Confidence 000 0 133456
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEe---
Q 001358 806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--- 881 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--- 881 (1092)
.+++|+|++++|++++ ||.|++||+. ++.+..+.+|...|++++|+|++..++++|+.|+.|+|||+.+++....
T Consensus 213 ~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~ 291 (435)
T 4e54_B 213 CSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY 291 (435)
T ss_dssp CCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB
T ss_pred EEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE
Confidence 7889999999999998 7999999986 4667788899999999999995556899999999999999988765433
Q ss_pred eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-------
Q 001358 882 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------- 954 (1092)
Q Consensus 882 l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~------- 954 (1092)
..+|...|++++|+|||++|++++.||.|+|||+.+++.............. ...+....|+|++..++++
T Consensus 292 ~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~ 369 (435)
T 4e54_B 292 SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ--HLTPIKAAWHPRYNLIVVGRYPDPNF 369 (435)
T ss_dssp CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS--SSCCCBCEECSSSSCEEEECCCCTTS
T ss_pred eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccc--cceeEEEEEcCCCCEEEEEEcCCCCe
Confidence 3579999999999999999999999999999999987644322111111000 0123345566666665553
Q ss_pred ------eCCcEEEEEcCCceeeeeeccCCCcCEEEE-EEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001358 955 ------HETHLAIYEAEELTCLKQWFPISSVPISQA-TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1092)
Q Consensus 955 ------~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l-~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~ 1013 (1092)
.++.|++||..+++.+..+..+|...|.++ +|+|||++|++|+ |++|+||++++|+..
T Consensus 370 ~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 370 KSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 235799999999999988888899999987 6999999999875 889999999998754
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-32 Score=307.64 Aligned_cols=289 Identities=12% Similarity=0.146 Sum_probs=259.3
Q ss_pred eeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 390 ~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
..+.+|...|.+++|+|+|++|++++.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i 100 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKL 100 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEE
Confidence 3488999999999999999999999999999999999986554 7889999999999999999 8999999999999
Q ss_pred EECCCCceeEEEecCCcceEEEeecccCCccEEEEEecC-----CeEEEEEcCCCCc-----------eEEecCCCC--c
Q 001358 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGA-----------RVDYDAPGL--G 531 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~-----------~~~~~~~~~--~ 531 (1092)
||+.+++.+..+. +...|.+++|++ ++.++++++.+ |.|++||+..... ...+..+.. .
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 9999999999988 889999999955 67899999999 9999999976542 223344444 8
Q ss_pred eEEEEEecCCCEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001358 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1092)
+.+++|+|+++++++++. ++.|++||+.+ +..+..+..|. ..|.+++|+|+++++++++.||.|++||+.++
T Consensus 178 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHE---KSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp EEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred eeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCC---CceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 999999999999999876 66799999998 78888888877 89999999999999999999999999999999
Q ss_pred ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC--------------eEEEEECCCCCeeeecccccccceeeeecCCc
Q 001358 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--------------RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1092)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 676 (1092)
+.+..+... ..+..++|+|+++++++++.++ .+++|+..+++.+..+.+|...|.+++++
T Consensus 251 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s--- 324 (369)
T 3zwl_B 251 QVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS--- 324 (369)
T ss_dssp CEEEEEECS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC---
T ss_pred ceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC---
Confidence 999888743 4589999999999999999988 89999999999999999999999999996
Q ss_pred ccccccccCCceeecCCCCCCcccceeeccccccceeceeec
Q 001358 677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~ 718 (1092)
|+++++++++.|+.+++|++...
T Consensus 325 -------------------~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 325 -------------------PQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp -------------------TTSSEEEEEETTSEEEEEEECHH
T ss_pred -------------------CCCCEEEEEcCCCeEEEEECccc
Confidence 78899999999999999998743
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.9e-33 Score=314.66 Aligned_cols=307 Identities=16% Similarity=0.167 Sum_probs=244.5
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCE
Q 001358 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTL 636 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~ 636 (1092)
+|+.........+.+|. ..|.+++|+|++ +++++|+.||.|++||+.+++....+...++...|.+++|+| ++++
T Consensus 57 ~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFD---RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp HHHHTTCEEEEEECCCS---SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred cccccccceEEeccCCC---CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence 44556677777888877 899999999999 899999999999999999999888887655667899999999 7899
Q ss_pred EEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceecee
Q 001358 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1092)
|++++.|+.|++||+.+. .+..+..
T Consensus 134 l~s~~~d~~i~iwd~~~~-~~~~~~~------------------------------------------------------ 158 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGS-VIQVFAK------------------------------------------------------ 158 (383)
T ss_dssp EEEEETTTEEEEEETTSC-EEEEEEC------------------------------------------------------
T ss_pred EEEEeCCCEEEEEECCCC-ceEEEec------------------------------------------------------
Confidence 999999999999998732 1100000
Q ss_pred eccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecC
Q 001358 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 796 (1092)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 796 (1092)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC-EEEEEeCCCeEEEEEcC
Q 001358 797 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNAR 874 (1092)
Q Consensus 797 ~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~dg~v~iwd~~ 874 (1092)
..++...|.+++|+|+++++++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.|+.|++||+.
T Consensus 159 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 159 -TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp -CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGG
T ss_pred -cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCC
Confidence 001456788899999999999888 689999998 5778888999999999999999 777 99999999999999999
Q ss_pred C----ceeeEeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC--CCCcC-------CCCCce
Q 001358 875 S----SEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP--DGVMT-------LAPSET 940 (1092)
Q Consensus 875 ~----~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~--~~~~~-------~~~~v~ 940 (1092)
+ +.++..+ +|...|++++|+| ++++|++++.|+.|++||+.+++.......... ..+.. ....+.
T Consensus 236 ~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 314 (383)
T 3ei3_B 236 NIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLI 314 (383)
T ss_dssp GCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred CCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCce
Confidence 8 5666666 6999999999999 999999999999999999998664332111110 01110 012344
Q ss_pred EEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccC-CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001358 941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 941 ~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~ 1009 (1092)
.++|+|||++ ..+.|+.|++||+.+++.+..+... |...+..++|+|||++|++++ ||.|++||+++
T Consensus 315 ~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 315 VAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 4666666666 3357899999999999998875532 567788889999999999997 99999999875
No 75
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.4e-33 Score=313.05 Aligned_cols=298 Identities=11% Similarity=0.125 Sum_probs=231.5
Q ss_pred CceEEeecCCCceEEEEEcCc-------CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC
Q 001358 336 SPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d-------~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
+|++++|+|||+ +||+|+.| +.|+||++..+.......+ .......+.+|...|.+++++ +
T Consensus 16 PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~---------~~~~~~~l~~~~~~v~s~~~~--~ 83 (365)
T 4h5i_A 16 PAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF---------HILSEFALEDNDDSPTAIDAS--K 83 (365)
T ss_dssp CEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE---------EEEEEEECCTTSCCCCEEEEE--T
T ss_pred CEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeee---------eeeeEEEccCCCCceEEEEeC--C
Confidence 899999999998 78888653 3599999987654322111 111223477899999888765 5
Q ss_pred CEEEEEe-----------CCCEEEEEEccCCCCccc-eEE-----ecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 409 SLLGVAY-----------SKHIVQLYAYHGGSDARQ-QLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 409 ~~las~~-----------~d~~i~iwd~~~~~~~~~-~~~-----l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+++|+ .|+.+++|++.++..... ... ...+...+.+++|||||+.+.+++++.|++|+|||
T Consensus 84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd 163 (365)
T 4h5i_A 84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIID 163 (365)
T ss_dssp TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEE
T ss_pred CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeE
Confidence 5666653 567899999887643211 111 12345568999999999965556777899999999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE--EecCCCCceEEEEEecCCCEEEEEec
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
+++++++..+. |...|.+++|+ +||.++++++.+ .+++|+..++.... ....+...+.+++|+|+++++++++.
T Consensus 164 ~~~~~~~~~~~-~~~~V~~v~fs--pdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~ 239 (365)
T 4h5i_A 164 PSDLTEKFEIE-TRGEVKDLHFS--TDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL 239 (365)
T ss_dssp TTTTEEEEEEE-CSSCCCEEEEC--TTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCcEEEEeC-CCCceEEEEEc--cCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence 99999999886 77889999995 477899998855 56666666666544 34456778999999999999999988
Q ss_pred CCCCceeEEEEeCCCCeE----EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-eCCCCCCC
Q 001358 550 SKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLPE 624 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~ 624 (1092)
++.....++.|+...+.. ...+.+|. ..|.+++|+|++++|++|+.|++|+|||+.+++++..+ ..| ...
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~~ 314 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SFA 314 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SSC
T ss_pred CCcceeEEeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cCC
Confidence 766666889999877654 23455555 88999999999999999999999999999999998876 444 457
Q ss_pred CceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358 625 NPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
|++++|+|||++||+++.|++|+||+++..
T Consensus 315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999999754
No 76
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-32 Score=312.84 Aligned_cols=299 Identities=16% Similarity=0.231 Sum_probs=247.4
Q ss_pred EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
....+|.+.+.+.++++++.. +++++.|+.|+|||+.+++..... ...|...|.+++|+|+
T Consensus 85 ~~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~ 145 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHD 145 (401)
T ss_dssp EECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTT
T ss_pred eeCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCC
Confidence 344588777665555444453 566778999999999999876541 2238899999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC-CCceeEEEecCCc
Q 001358 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGA 486 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~ 486 (1092)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ ++ .+++++.|+.|++||+. .+..+..+.+|..
T Consensus 146 ~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 218 (401)
T 4aez_A 146 GSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218 (401)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred CCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence 9999999999999999999986554 678999999999994 45 79999999999999999 5677888999999
Q ss_pred ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001358 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
.|.+++|++ ++.+|++++.||.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||..+++
T Consensus 219 ~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 219 EVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGA 295 (401)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCC
T ss_pred CeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCC
Confidence 999999965 6789999999999999999998888889899999999999998866555432 1237789999999999
Q ss_pred EEEEEeeccccCCceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
.+..+.. . ..+.+++|+|+++.+++++ .||.|++||+.++.........++...|.+++|+|++++|++++.||
T Consensus 296 ~~~~~~~-~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 296 RVNTVDA-G---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp EEEEEEC-S---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred EEEEEeC-C---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 9888864 2 5899999999999999954 89999999999977766654444456799999999999999999999
Q ss_pred eEEEEECCCCCeeee
Q 001358 645 RIKILETPESNSVDA 659 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~ 659 (1092)
.|++|++.+++.+..
T Consensus 372 ~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 372 NLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEEEEECCC------
T ss_pred cEEEEECCCCccccc
Confidence 999999998866544
No 77
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.4e-32 Score=299.18 Aligned_cols=252 Identities=13% Similarity=0.167 Sum_probs=211.8
Q ss_pred eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCC--CceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
+..+.+|++.|++++|+|||+ +||+|+.|++|+|||+.++ +.+.. +.+|.+.|.+++|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~-------------------l~gH~~~V~~v~~ 61 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDW 61 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEE-------------------ECCCSSCEEEEEE
T ss_pred ceeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEE-------------------EccccCCeEEEEe
Confidence 356789999999999999998 6999999999999999754 33332 7799999999999
Q ss_pred CCC--CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEEEEECCCCc--ee
Q 001358 405 SPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RT 478 (1092)
Q Consensus 405 spd--g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~--~~ 478 (1092)
+|+ |++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||+.++. ..
T Consensus 62 s~~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 62 AHPKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp CCGGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCC
T ss_pred cCCCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceee
Confidence 874 899999999999999999987422 22357789999999999998 77 89999999999999998764 24
Q ss_pred EEEecCCcceEEEeecccC-----------CccEEEEEecCCeEEEEEcCCCC----ceEEecCCCCceEEEEEecCC--
Q 001358 479 YSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG-- 541 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~dg-- 541 (1092)
..+.+|...|.+++|++.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence 6778999999999998752 35799999999999999998766 345678899999999999995
Q ss_pred -CEEEEEecCCCCceeEEEEeCCCCe---EEEEE--eeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001358 542 -RRLFSCGTSKEGESFLVEWNESEGA---IKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 542 -~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1092)
++|++++. ++.|++||..++. ....+ ..+ ...|.+++|+|++++|++++.|++|++|+..
T Consensus 219 ~~~las~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 219 RSYMASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKF---PDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCC---SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ceEEEEEEC----CCcEEEEEeCCCCCccceeeeecccC---CCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 78999886 6679999988743 11222 233 3789999999999999999999999999976
No 78
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-34 Score=324.45 Aligned_cols=289 Identities=12% Similarity=0.063 Sum_probs=227.1
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCC--CceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
++.|.+.|++++|+|||+ +||+|+.|+.|+|||+.++ +.+.. +.+|...|.+++|+|+
T Consensus 7 ~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPK 66 (377)
T ss_dssp EEECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTT
T ss_pred EecCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCC
Confidence 445667999999999998 7999999999999999987 44432 6789999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc---eeEEEec-
Q 001358 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEG- 483 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~---~~~~~~~- 483 (1092)
+++|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+++++ ....+.+
T Consensus 67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (377)
T 3dwl_C 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRP 144 (377)
T ss_dssp TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence 99999999999999999999874444556788999999999999999 79999999999999999887 4778888
Q ss_pred CCcceEEEeecccCCccEEEEEecCCeEEEEEcCC------------------CCceEEecCCCCceEEEEEecCCCEEE
Q 001358 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS------------------LGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
|...|.+++|++ ++.+|++++.||.|++||+.. ......+ .|...|.+++|+|++++|+
T Consensus 145 h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 145 LRSTILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp CCSCEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred cCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence 999999999965 678999999999999999853 2233344 7788999999999999999
Q ss_pred EEecCCCCceeEEEEeCCCCeE----EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------
Q 001358 546 SCGTSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------- 611 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---------- 611 (1092)
+++. ++.|++||+.+++. +..+.+|. ..|.+++|+|+++++++++.++.+ +|+.....
T Consensus 222 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 293 (377)
T 3dwl_C 222 YAGH----DSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAG 293 (377)
T ss_dssp EEET----TTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred EEeC----CCcEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence 9986 66799999999987 77888877 899999999999999888877666 66554211
Q ss_pred -----------------------------eEEEEeC-----------CCCCCCCceEEEccC-CC---EEEEEeCCCeEE
Q 001358 612 -----------------------------LLTTIDA-----------GGGLPENPRICFNKN-GT---LLAVIANENRIK 647 (1092)
Q Consensus 612 -----------------------------~~~~~~~-----------~~~~~~v~~v~~s~~-~~---~l~~~~~dg~i~ 647 (1092)
....... ..+...|.++++.+. +. .+++++.||.|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~ 373 (377)
T 3dwl_C 294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV 373 (377)
T ss_dssp CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence 0000000 014456888886653 33 699999999999
Q ss_pred EEEC
Q 001358 648 ILET 651 (1092)
Q Consensus 648 iw~~ 651 (1092)
+||+
T Consensus 374 iWdl 377 (377)
T 3dwl_C 374 LWTL 377 (377)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 79
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.5e-32 Score=308.82 Aligned_cols=289 Identities=16% Similarity=0.256 Sum_probs=244.2
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
..+.|+||+++ +||+|. |++|+|||+.+|+.+.... +.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999875 688875 8999999999998776422 557889999999999999999999
Q ss_pred CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEecCCcceEEEeec
Q 001358 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~i~~~ 494 (1092)
.|++|+|||+++++.+. .+.+|...+.+++++ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987555 788999999998875 45 7999999999999998864 5567889999999999985
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEecCCCEE-EEEecCCCCceeEEEEeCCCCeEEE
Q 001358 495 AKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKR 569 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l-~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1092)
+ ++.++++++.||.+++|+....+. ......+...|.+++|+|++..+ ++++. ..++.|++||+.+++...
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 4 678999999999999999987653 34667788899999999977655 44433 337889999999999998
Q ss_pred EEeeccccCCceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001358 570 TYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
.+..+. .+.++.|+|+++.+++++ .|+.|+|||+.+++++..+..|. ..|.+++|+|+|++|++++.|++|+
T Consensus 316 ~~~~~~----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvr 389 (420)
T 4gga_A 316 AVDAHS----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLR 389 (420)
T ss_dssp EEECSS----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEE
T ss_pred eecccc----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEE
Confidence 887654 789999999999998865 78999999999999999998664 5799999999999999999999999
Q ss_pred EEECCCCCeeeecc
Q 001358 648 ILETPESNSVDAAG 661 (1092)
Q Consensus 648 iw~~~~~~~~~~~~ 661 (1092)
+|++.+..+.....
T Consensus 390 iWdv~~~~~~~~~~ 403 (420)
T 4gga_A 390 LWRCFELDPARRRE 403 (420)
T ss_dssp EECCSCSSCC----
T ss_pred EEECCCCCccchhh
Confidence 99998765544443
No 80
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-33 Score=311.77 Aligned_cols=317 Identities=11% Similarity=0.021 Sum_probs=247.7
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCE
Q 001358 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
+.-.+.|.+|+|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|||
T Consensus 12 ~~~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg-- 64 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE-- 64 (588)
T ss_dssp CCCSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC--
T ss_pred hHhhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC--
Confidence 34457999999999998 799999999999 7555532 45799999999999999
Q ss_pred EEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc----
Q 001358 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA---- 486 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~---- 486 (1092)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .|++++.||.|++||.++ ++..+. |..
T Consensus 65 -----~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 65 -----FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS 129 (588)
T ss_dssp -----CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred -----CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence 4555555554332212 12 5688999999999999 799999999999999544 667777 766
Q ss_pred -ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-------eEEe----cCCCCceEEEEEecCCCEEEEEecCCCCc
Q 001358 487 -PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-------RVDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 487 -~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~----~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
.|.+++|+ +||++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++. +
T Consensus 130 ~sv~svafS--PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D 201 (588)
T 2j04_A 130 RTYHCFEWN--PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----N 201 (588)
T ss_dssp TCEEEEEEC--SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----T
T ss_pred ccEEEEEEc--CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----C
Confidence 49999995 5789999999999999999998753 3444 5667899999999999 666665 6
Q ss_pred eeEEEEeCCCCeE---EEEEe-eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358 555 SFLVEWNESEGAI---KRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 555 ~~i~iwd~~~~~~---~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
+.|++||+.++.. .+++. +|. ..|.+++|+ ++.+++++ +++|++||+.+++....... +...+..++|
T Consensus 202 ~tVrlWd~~~~~~~~~~~tL~~~h~---~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~ 273 (588)
T 2j04_A 202 NSVFSMTVSASSHQPVSRMIQNASR---RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPL 273 (588)
T ss_dssp CCEEEECCCSSSSCCCEEEEECCCS---SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEE
T ss_pred CeEEEEECCCCccccceeeeccccc---CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEe
Confidence 6799999988874 34564 554 789999999 58888887 69999999998877444433 4467999999
Q ss_pred --ccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccc
Q 001358 631 --NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1092)
Q Consensus 631 --s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 708 (1092)
+|++..+++++.+|+ ++|.... +++ +||+..+++. |+
T Consensus 274 ~~s~d~~~La~a~edG~-klw~~d~----------------~~~----------------------spd~~l~a~~--d~ 312 (588)
T 2j04_A 274 NHEKESTILLMSNKTSY-KVLLEDE----------------LHV----------------------TADNIIAPYL--EK 312 (588)
T ss_dssp TTCSSCEEEEECSSCEE-EEEESSS----------------EEE----------------------ECCCSSHHHH--HH
T ss_pred eeCCCCCEEEEEcCCCC-EEEeecc----------------EEE----------------------CCCceEEEEc--CC
Confidence 999999999999999 9999771 222 4677777775 89
Q ss_pred ccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeec
Q 001358 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 754 (1092)
Q Consensus 709 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 754 (1092)
++++|+...+.. . ...+...|.+++|+|||+.+++++.
T Consensus 313 ~v~lW~~~g~~l------~--~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 313 KFKKWSTIWNEF------N--NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHHTTTTTTSS------S--SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEEECCCCce------e--eeccceEEEEEEECCCCCEEEEEEe
Confidence 999999743221 1 1124567999999999998887764
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=9.9e-32 Score=329.96 Aligned_cols=212 Identities=18% Similarity=0.295 Sum_probs=184.2
Q ss_pred EEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-----ceeEEEecCCcceEEEeecccCCccEEEEEecCC
Q 001358 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG 509 (1092)
Q Consensus 435 ~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg 509 (1092)
..+.+|.+.|++++|+|++.. +|+||+.|++|++||+.++ .....+.+|...|.+++|++ ++.+|++|+.||
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~Dg 452 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSWDG 452 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEETTS
T ss_pred hhcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeCCC
Confidence 357899999999999998644 8999999999999998763 45678899999999999954 778999999999
Q ss_pred eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001358 510 KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 510 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
+|++||+.+......+..|...|.+++|+|++++|++++. ++.|++||...............|...|.+++|+|+
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 9999999999888899999999999999999999999987 667999998766554443333334488999999998
Q ss_pred C--CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 001358 590 K--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 590 ~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
+ ..+++++.|++|++||+.+++....+..|. ..|.+++|+|++++|++++.||.|++||+.+++
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 6 579999999999999999999998887664 469999999999999999999999999988653
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3e-32 Score=311.26 Aligned_cols=296 Identities=16% Similarity=0.151 Sum_probs=250.3
Q ss_pred eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC------ceEEecCCCCceEEEEEecC----C---CEE
Q 001358 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYDAPGLGCTRMAYSAN----G---RRL 544 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~i~~~~~s~d----g---~~l 544 (1092)
...+.+|...|++++|++ .+|++++.||.|++||+.... ....+..|...|.+++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 456679999999999965 599999999999999999887 67788889999999999999 9 999
Q ss_pred EEEecCCCCceeEEEEeCCCCeE-----EEEEeecccc--CCceEEEEEc----CCCCE-EEEEeCCCeEEEEECCC---
Q 001358 545 FSCGTSKEGESFLVEWNESEGAI-----KRTYQGLQLQ--HNSVSVVHFD----TAKDQ-ILAAGDDHVIKIWDMNK--- 609 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~-----~~~~~~~~~~--~~~v~~~~~~----~~~~~-l~~~s~dg~i~iwd~~~--- 609 (1092)
++++. ++.|++||+.+++. ...+..|..+ ...|.+++|+ |++++ +++++.||.|++||+.+
T Consensus 85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99986 56699999998887 7888877322 3789999999 99999 99999999999999988
Q ss_pred ---CceEE-----EEeC-----CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCc
Q 001358 610 ---VQLLT-----TIDA-----GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1092)
Q Consensus 610 ---~~~~~-----~~~~-----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 676 (1092)
++.+. .+.. ..+...+.+++|+|++ ++++++.||.|++||+.+++.+..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------- 225 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES-------------- 225 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC--------------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec--------------
Confidence 66555 5543 3334568999999999 999999999999999875432211110
Q ss_pred ccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCC
Q 001358 677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 756 (1092)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 756 (1092)
T Consensus 226 -------------------------------------------------------------------------------- 225 (397)
T 1sq9_A 226 -------------------------------------------------------------------------------- 225 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCC---CCCeeEEEEecCCCEEEEEe-C---CeEEEEE
Q 001358 757 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS---QEAVPCFALSKNDAYLFSAS-G---GVISLYI 829 (1092)
Q Consensus 757 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~v~~~~~s~dg~~l~~~s-d---g~i~iwd 829 (1092)
. .+| ...+.+++|+|++++|++++ | +.|++||
T Consensus 226 ---------------------------------------~--~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d 264 (397)
T 1sq9_A 226 ---------------------------------------Q--HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE 264 (397)
T ss_dssp ---------------------------------------C--C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred ---------------------------------------c--ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEE
Confidence 0 014 66788999999999999887 6 8999999
Q ss_pred cCCceeeEEecC-------------CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec------cc-----
Q 001358 830 VMTFKTILTIMP-------------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------GH----- 885 (1092)
Q Consensus 830 ~~~~~~~~~~~~-------------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~------~h----- 885 (1092)
+.+++.+..+.. |...|.+++|+| ++++|++++.||.|++||+.+++.+..+. +|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
T 1sq9_A 265 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL 343 (397)
T ss_dssp TTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred CCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhh
Confidence 999999999988 999999999999 89999999999999999999999999999 88
Q ss_pred ----------cCCeEEEEEcCCC----------CEEEEEeCCCcEEEEEcCCC
Q 001358 886 ----------SKRVTGLVFSDAL----------NILVSSGGDAQIFVWDVDGW 918 (1092)
Q Consensus 886 ----------~~~V~~l~~spdg----------~~l~s~s~Dg~i~iwd~~~~ 918 (1092)
...|++++|+|++ ++|++++.||.|++|++.++
T Consensus 344 ~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 344 AVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999999875
No 83
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.9e-32 Score=309.05 Aligned_cols=347 Identities=14% Similarity=0.129 Sum_probs=247.5
Q ss_pred ceeEecccCCCCceEEeecC-CCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~sp-dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.....+.+|.+.|++++|+| +|+ +|++|+.||.|+|||+.+++.......... .........+|...|.+++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~ 106 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQ 106 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEE
T ss_pred cceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEE
Confidence 45577889999999999999 998 799999999999999999877654221100 0000001246999999999
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC---CCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d---~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
|+| ++++|++++.|+.|++||+.+++... .+ .+...+.+++|++. +. ++++++.|+.|++||+.+++.+.
T Consensus 107 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSH 180 (408)
T ss_dssp ECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCE
T ss_pred EccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceee
Confidence 999 88899999999999999999986554 33 37778999999884 44 79999999999999999999999
Q ss_pred EEecCCcceEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCc-eEEe---------------cCCCCceEEEEEecCCC
Q 001358 480 SFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA-RVDY---------------DAPGLGCTRMAYSANGR 542 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~-~~~~---------------~~~~~~i~~~~~s~dg~ 542 (1092)
.+.+|...|.+++|++ ++. ++++++.||.|++||++.... ...+ ..+...|.+++|+|+++
T Consensus 181 ~~~~~~~~v~~~~~~~--~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 181 ILQGHRQEILAVSWSP--RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp EECCCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred eecCCCCcEEEEEECC--CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 9999999999999966 445 699999999999999987652 2222 45677899999999999
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc--cCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC
Q 001358 543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1092)
+|++++. ++.|++||+.+++....+.++.. ....+........+..+++++.++.|++||+.+++.+..+..+.
T Consensus 259 ~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 259 HLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp EEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred EEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 9999986 56699999999887655543321 11222223333445677888889999999999999999998664
Q ss_pred CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccc
Q 001358 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 700 (1092)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 700 (1092)
..|.+++|+|++++|++++.||.|++|++.+.+.+......... ..+. ......
T Consensus 335 --~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~~~ 388 (408)
T 4a11_B 335 --KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLN---------------------PAFEDA 388 (408)
T ss_dssp --SCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------------
T ss_pred --CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccc---------------------ccccee
Confidence 46999999999999999999999999999988766544322111 1111 123445
Q ss_pred ceeeccccccceecee
Q 001358 701 EISVEAENKSEVEKPL 716 (1092)
Q Consensus 701 l~s~~~d~~i~~w~~~ 716 (1092)
..+.+.++.+++|+..
T Consensus 389 ~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 389 WSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ----------------
T ss_pred ecccCccCceeecCCc
Confidence 5677788999999853
No 84
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.1e-32 Score=295.47 Aligned_cols=252 Identities=17% Similarity=0.299 Sum_probs=213.3
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v 469 (1092)
+.+|...|.+++|+|||++||+|+.|++|+|||+.++.. ....++.+|.++|.+++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 778999999999999999999999999999999975421 223478899999999999864 77 8999999999999
Q ss_pred EECCCCc--eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEecC-----
Q 001358 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN----- 540 (1092)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d----- 540 (1092)
||+.+++ .+..+.+|...|.+++|++..++.+|++++.||+|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999998765578999999999999999987642 4567788889999999997
Q ss_pred --------CCEEEEEecCCCCceeEEEEeCCCCe----EEEEEeeccccCCceEEEEEcCCC---CEEEEEeCCCeEEEE
Q 001358 541 --------GRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIW 605 (1092)
Q Consensus 541 --------g~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iw 605 (1092)
+++|++++. ++.|++||..++. ....+.+|. ..|.+++|+|++ .+|++++.|++|++|
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC---CceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 578999886 6679999998765 566777777 899999999984 789999999999999
Q ss_pred ECCCCc--e-EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358 606 DMNKVQ--L-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 606 d~~~~~--~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
|+.++. . ...+....+...|.+++|+|++++|++++.|+.|++|+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 998753 2 22332233445689999999999999999999999999763
No 85
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-34 Score=317.39 Aligned_cols=330 Identities=10% Similarity=0.033 Sum_probs=248.8
Q ss_pred CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
-...|.+++|+|||+++++++. +++|+ |...++. +.+|. ..|.+++|+|+| .++.+.+|+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~----D~TV~--d~~~~~~---l~gh~---~~v~~V~FsPdg-------~~~~~~~~~~ 74 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFP----DISIG--QPKYAKD---INCNS---KNLFHVKEFPLE-------FENKLDFELA 74 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSS----SEEEE--EECCCSC---CSSBG---GGTEEEEEECCC-------CCCTTTTSCC
T ss_pred hhccEEEEEECCCCCEEEEEcC----Cceee--cccccce---ecCCC---ccEEEEEECCCC-------CcceEEEEeC
Confidence 4468899999999999999976 67788 7655544 35766 899999999998 4555555554
Q ss_pred CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCc
Q 001358 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1092)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 687 (1092)
+ ....+.... ...|.+++|||+|.+||+++.||.+++|+... .+..+. |...+
T Consensus 75 ~---~~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~-------------------- 127 (588)
T 2j04_A 75 Q---QNGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL-------------------- 127 (588)
T ss_dssp C---SSCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS--------------------
T ss_pred C---CceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc--------------------
Confidence 3 222232122 45799999999999999999999999999543 222221 11110
Q ss_pred eeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCc
Q 001358 688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1092)
Q Consensus 688 ~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~ 767 (1092)
....+.+++|||||+.|++++.||.|++|++..+.
T Consensus 128 ---------------------------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~ 162 (588)
T 2j04_A 128 ---------------------------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS 162 (588)
T ss_dssp ---------------------------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred ---------------------------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence 12358899999999999999999999999976531
Q ss_pred cccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee---eEEe-cCCC
Q 001358 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI-MPPS 843 (1092)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~---~~~~-~~~~ 843 (1092)
... +++ ..+........+|...|.+++|+||| +++++.|+++++||+.+++. .+++ .+|.
T Consensus 163 l~~---------~~~------i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~ 226 (588)
T 2j04_A 163 ENT---------PEF------YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASR 226 (588)
T ss_dssp TTC---------CCC------EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred ccc---------ccc------eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence 100 000 00122222223588999999999999 55555689999999988774 3566 4788
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEE--cCCCCEEEEEeCCCcEEEEEcCCCcee
Q 001358 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--SDALNILVSSGGDAQIFVWDVDGWGIQ 921 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--spdg~~l~s~s~Dg~i~iwd~~~~~~~ 921 (1092)
..|.+++|+ ++.||+++ +++|++||+.+++......+|.+.|..++| +||+..|+++++||+ ++|..+.
T Consensus 227 ~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~---- 297 (588)
T 2j04_A 227 RKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE---- 297 (588)
T ss_dssp SCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS----
T ss_pred CcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc----
Confidence 899999998 37899887 699999999988874444489999999999 999999999999999 9999872
Q ss_pred eeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEe
Q 001358 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s 997 (1092)
++|+||+..++.. |+++++|+...+. +.. +.+ ...|.+++|||||+.+|+++
T Consensus 298 --------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~-~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 298 --------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNN-YET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp --------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSS-SCC-EEEEEEEEECTTSSEEEEEE
T ss_pred --------------------EEECCCceEEEEc-CCEEEEEECCCCc-eee-ecc-ceEEEEEEECCCCCEEEEEE
Confidence 5699999988875 9999999976554 332 333 77899999999999999876
No 86
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1e-30 Score=288.45 Aligned_cols=282 Identities=16% Similarity=0.268 Sum_probs=237.0
Q ss_pred ceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001358 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~ 416 (1092)
.++|+||+++ +||+|. |++|+|||+.+|+.+.... +.+|...|.+++|+|+|++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5789999987 578774 8999999999998876522 5578999999999999999999999
Q ss_pred CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEecCCcceEEEeecc
Q 001358 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~i~~~~ 495 (1092)
|++|++||+++++.+. .+.+|...+.++.+ ++. .+++++.++.+++|+..++ ..+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999987655 67789988887665 455 7999999999999998876 45678889999999999854
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001358 496 KENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
++.++++++.||.|++||+.+.+. ......+...+..++++|++..++.... +..++.|++||...+......
T Consensus 161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 668999999999999999987653 3455667778999999998776553322 134778999999988877665
Q ss_pred eeccccCCceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEE
Q 001358 572 QGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1092)
... ..+..+.|+|+++.+++++ .|+.|++||+.+++++..+..|. ..|.+++|+|+|++|++++.||+|+||
T Consensus 238 ~~~----~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 238 DAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp ECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred cce----eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 543 5799999999999988765 79999999999999999998664 579999999999999999999999999
Q ss_pred ECCCC
Q 001358 650 ETPES 654 (1092)
Q Consensus 650 ~~~~~ 654 (1092)
|+.+.
T Consensus 312 d~~~~ 316 (318)
T 4ggc_A 312 RCFEL 316 (318)
T ss_dssp CCSCC
T ss_pred ECCCC
Confidence 98754
No 87
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.4e-32 Score=305.51 Aligned_cols=290 Identities=12% Similarity=0.103 Sum_probs=247.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..|..+|.+++|+|||++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 45699999999999999999999999999999999875 113346789999999999999999 899999999999999
Q ss_pred CCCCceeEEE--ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEecCCCEEE
Q 001358 472 AVTGSRTYSF--EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 472 ~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
+.+++....+ ..|...|.+++|++ ++.+|++++.||.|++||++.... ......+...|.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 9998765443 67999999999965 678999999999999999998774 233356788999999999999999
Q ss_pred EEecCCCCceeEEEEeC------------------CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358 546 SCGTSKEGESFLVEWNE------------------SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
+++. ++.|++||+ .+++.+..+.+|. ..+.+++|+|+++++++++.||.|++||+
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCC---CeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9986 566999994 4678888888777 89999999999999999999999999999
Q ss_pred CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC--CCe-----------------------------
Q 001358 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE--SNS----------------------------- 656 (1092)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~--~~~----------------------------- 656 (1092)
.+++.+..+..+. ..+.+++|+|++.+++++ .|+.|++|++.+ +..
T Consensus 232 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 232 DKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp GGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred CCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 9999999988663 468999999999988887 899999999987 310
Q ss_pred ----------eeecccccccceeeeecCCcccccccccCCceeecCCCCCCc---ccceeeccccccceeceee
Q 001358 657 ----------VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV---KPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 657 ----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~---~~l~s~~~d~~i~~w~~~~ 717 (1092)
.....+|...|.++++. +++| +++++++.||.|++|++..
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~---------------------~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNSVSQISVL---------------------SGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp C---------CCCSSSSSSCEEEEEEE---------------------ESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccccCccccccccccccCCcceeEEe---------------------cCCCcceeeEEEecCCCceEEEEecC
Confidence 11124777888888765 3566 8999999999999999764
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-32 Score=309.79 Aligned_cols=245 Identities=11% Similarity=0.136 Sum_probs=195.5
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
+...|.+++|+|+++++++++.||.+++|++..... .....+. +|...|.+++|+|
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~----------------------~~~~~~~--~h~~~v~~~~~s~ 65 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW----------------------KHARTFS--DHDKIVTCVDWAP 65 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE----------------------EECCCBC--CCSSCEEEEEECT
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce----------------------EEEEEEe--cCCceEEEEEEeC
Confidence 456899999999999999999999999999864310 0011121 4899999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCce---eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce---eeEeecc-
Q 001358 813 NDAYLFSAS-GGVISLYIVMTFK---TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---VISKLEG- 884 (1092)
Q Consensus 813 dg~~l~~~s-dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~---~~~~l~~- 884 (1092)
++++|++++ |+.|++||+.+++ ....+..|...|.+++|+| ++++|++|+.|+.|++||+.+++ ....+.+
T Consensus 66 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (377)
T 3dwl_C 66 KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP 144 (377)
T ss_dssp TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence 999999998 7999999999877 6777888999999999999 89999999999999999999887 4778887
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee-------------eeeeeecCCCCcCCCCCceEEEEecCCCEE
Q 001358 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-------------TCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 951 (1092)
|...|.+++|+|++++|++++.|+.|++||+...+.. ...++... ++.. .|.+++|+|+|++|
T Consensus 145 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~v~~~~~sp~~~~l 220 (377)
T 3dwl_C 145 LRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG---WVHAVGFSPSGNAL 220 (377)
T ss_dssp CCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS---SEEEEEECTTSSCE
T ss_pred cCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc---eEEEEEECCCCCEE
Confidence 9999999999999999999999999999999643211 13344444 4443 79999999999999
Q ss_pred EE-EeCCcEEEEEcCCcee----eeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358 952 LL-VHETHLAIYEAEELTC----LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 952 a~-~~d~~v~lwd~~~~~~----~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
++ +.|+.|++||+.+++. +.. +.+|...|.+++|+|||++|++++.|+.+ +|+..
T Consensus 221 ~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 221 AYAGHDSSVTIAYPSAPEQPPRALIT-VKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEEETTTEEC-CEECSTTSCEEECCC-EECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EEEeCCCcEEEEECCCCCCcceeeEe-ecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 98 5789999999999887 444 56799999999999999999998766655 67665
No 89
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.2e-32 Score=299.14 Aligned_cols=253 Identities=15% Similarity=0.205 Sum_probs=205.9
Q ss_pred EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp- 406 (1092)
..+.+|++.|++++|+|+|+ +||+|+.|++|+|||+.++..... ..+.+|...|.+++|+|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~ 68 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHP 68 (316)
T ss_dssp -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCG
T ss_pred eecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCC
Confidence 46789999999999999998 699999999999999988753211 12778999999999987
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEEEEECCCCce---eEE
Q 001358 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---TYS 480 (1092)
Q Consensus 407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~~---~~~ 480 (1092)
++++||+|+.|++|++||+.++... ....+.+|...|.+++|+|+ +. +|++|+.|++|++||+.++.. ...
T Consensus 69 ~~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~ 145 (316)
T 3bg1_A 69 MYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKI 145 (316)
T ss_dssp GGSSCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred CCCCEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeee
Confidence 4899999999999999999986422 23367899999999999998 66 799999999999999987632 345
Q ss_pred EecCCcceEEEeecccC---------------CccEEEEEecCCeEEEEEcCCCC---ceEEecCCCCceEEEEEecCC-
Q 001358 481 FEGHGAPVYSLCPHAKE---------------NIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSANG- 541 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~---------------~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~dg- 541 (1092)
+.+|...|.+++|++.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++
T Consensus 146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~ 225 (316)
T 3bg1_A 146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG 225 (316)
T ss_dssp TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence 67899999999997652 14689999999999999997553 455678889999999999987
Q ss_pred ---CEEEEEecCCCCceeEEEEeCCCCe----EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001358 542 ---RRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 542 ---~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1092)
++|++++. ++.|++||..+.. ....+..|. ..|.+++|+|++++|++++.|++|++|+..
T Consensus 226 ~~~~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 226 LPTSTIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFN---DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSCCEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCceEEEEcC----CCeEEEEEccCccccchhhhhhhcCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999886 6789999987631 223445555 899999999999999999999999999975
No 90
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-31 Score=311.42 Aligned_cols=301 Identities=13% Similarity=0.204 Sum_probs=233.1
Q ss_pred cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCC------------CcE
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG------------VSV 399 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~------------~~V 399 (1092)
.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++....... ...-....+.+|. ..|
T Consensus 26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCce
Confidence 4577999999999998 799999999999999998763110000 0000112266898 889
Q ss_pred EEEEECCCC--CEEEEEeCCCEEEEEEccCCCCcc------------------------------------ce-EEeccc
Q 001358 400 NRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSDAR------------------------------------QQ-LEIDAH 440 (1092)
Q Consensus 400 ~~l~~spdg--~~las~~~d~~i~iwd~~~~~~~~------------------------------------~~-~~l~~h 440 (1092)
.+++|+|++ .+|++++.|++|++||+.++.... .. ....+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 899999999999999998643210 00 113689
Q ss_pred ccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC-CceeE-------EEecCCcceEEEeecccCCc-cEEEEEecCCeE
Q 001358 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTY-------SFEGHGAPVYSLCPHAKENI-HFIFSISVDGKI 511 (1092)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~-------~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i 511 (1092)
...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|++ ++ .+|++++.||.|
T Consensus 177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTI 251 (447)
T ss_dssp SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeE
Confidence 99999999999999 78888 799999999984 44444 2568999999999965 55 799999999999
Q ss_pred EEEEcCCCCc----eEEecCCCC------------ceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC-CeEEEEEeec
Q 001358 512 KAWLYDSLGA----RVDYDAPGL------------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGL 574 (1092)
Q Consensus 512 ~vwd~~~~~~----~~~~~~~~~------------~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~ 574 (1092)
++||+++... ...+..+.. .|.+++|+|+|++|++++. +.|++||+.+ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccceeecc
Confidence 9999998876 667777765 8999999999999998863 5799999997 8888888887
Q ss_pred cccCC------------ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----------------------
Q 001358 575 QLQHN------------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----------------------- 619 (1092)
Q Consensus 575 ~~~~~------------~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----------------------- 619 (1092)
..... .+..++|+|++++|++|+.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 62111 1334899999999999999999999999998876422111
Q ss_pred -------CCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358 620 -------GGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 620 -------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
.....|..++|+|++++||+++.++ +++|...
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1123578899999999999998875 7777643
No 91
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.3e-31 Score=302.15 Aligned_cols=294 Identities=17% Similarity=0.223 Sum_probs=245.1
Q ss_pred eeecCCCCcEEEEEECCC----CCEEEEEeCCCEEEEEEccCCCCccceEEec--ccccceeEEEeeCC----CCcEEEE
Q 001358 390 ALVRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAP----CKQISVI 459 (1092)
Q Consensus 390 ~~l~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~v~~~~~s~d----~~~l~l~ 459 (1092)
.+..+|...|.+++|+|+ ...+++++.++.|++||+.+++.+....... .|...|.+++|+|+ ++ +|+
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~ 89 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLA 89 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEE
Confidence 346689999999999994 4566666677799999999887665443332 26688999999999 55 799
Q ss_pred EEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCCceEEEE
Q 001358 460 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMA 536 (1092)
Q Consensus 460 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~ 536 (1092)
+|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+ ..+...|.+++
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 9999999999999999999999999999999999652 5679999999999999999998887777 67888999999
Q ss_pred EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee-------------------------ccccCCceEEEEEcCCCC
Q 001358 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------------------LQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~v~~~~~~~~~~ 591 (1092)
|+|++++|++++. ++.|++||+.+++....+.. ...+...|.+++|+ ++
T Consensus 169 ~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 242 (366)
T 3k26_A 169 YDLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD 242 (366)
T ss_dssp ECTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT
T ss_pred ECCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC
Confidence 9999999999986 56699999998765543332 00133889999998 67
Q ss_pred EEEEEeCCCeEEEEECCCCce--------------EEEEeCCCCCCCCceEEEccC--CCEEEEEeCCCeEEEEECCCCC
Q 001358 592 QILAAGDDHVIKIWDMNKVQL--------------LTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
++++++.|+.|++||+.++.. +..+..+ ...|.+++|+|+ +++|++++.||.|++|++.+++
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 999999999999999987754 5666655 346899999999 9999999999999999999875
Q ss_pred ee----eecccc--cccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceecee
Q 001358 656 SV----DAAGVL--SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 656 ~~----~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1092)
.. ..+.+| ...|.+++|+ |+++++++++.|+.|++||+.
T Consensus 321 ~~~~~~~~~~~~~~~~~v~~~~~s----------------------~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 321 PHKAKCTTLTHHKCGAAIRQTSFS----------------------RDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGGCEEEEECCTTCCSCEEEEEEC----------------------TTSSEEEEEETTSEEEEEEC-
T ss_pred CccccceEEcccccCCceEEEEeC----------------------CCCCeEEEEeCCCEEEEEEec
Confidence 43 366666 6888888886 788999999999999999964
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.9e-31 Score=298.16 Aligned_cols=293 Identities=13% Similarity=0.164 Sum_probs=241.0
Q ss_pred eeecCCCCcEEEEEECCCCCEEE-EEeC---CCEEEEEEccCCCCccceEEecccccceeEEEeeCC---CCcEEEEEEe
Q 001358 390 ALVRDPGVSVNRVVWSPDGSLLG-VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG 462 (1092)
Q Consensus 390 ~~l~~h~~~V~~l~~spdg~~la-s~~~---d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d---~~~l~l~s~~ 462 (1092)
.++.+|...|.+++|+|++..++ +|+. |+.|++||+.+++.... ...+|...|.+++|+|+ ++ +|++|+
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEec
Confidence 34678999999999999997655 5554 89999999998764432 23379999999999999 57 799999
Q ss_pred CCCcEEEEECCCCc-eeEEEecCCcceEEEeecc----cCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCC----ce
Q 001358 463 DDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHA----KENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL----GC 532 (1092)
Q Consensus 463 ~d~~i~vwd~~~~~-~~~~~~~~~~~v~~i~~~~----~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~----~i 532 (1092)
.|+.|++||+.+++ .+..+.+|...|.+++|.+ ++++.+|++++.||.|++||+.... ....+..+.. .+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 99999999999998 8899999999999997643 5678899999999999999999887 5666655443 78
Q ss_pred EEEE----EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC---CCCEEEEEeCCCeEEEE
Q 001358 533 TRMA----YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT---AKDQILAAGDDHVIKIW 605 (1092)
Q Consensus 533 ~~~~----~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~s~dg~i~iw 605 (1092)
.+++ |+|+++++++++. ++.|++||+.+++.... ..+. ..|.+++|+| +++++++++.||.|++|
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~ 239 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVF 239 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence 8888 7889999999986 66799999999987544 4444 7899999999 99999999999999999
Q ss_pred ECCCCceEEEEe---CCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCCC-------------------Ceeeeccc
Q 001358 606 DMNKVQLLTTID---AGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES-------------------NSVDAAGV 662 (1092)
Q Consensus 606 d~~~~~~~~~~~---~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~-------------------~~~~~~~~ 662 (1092)
|+.+++....+. ...+...|.+++|+|+++ ++++++.||.|++|++..+ +.+..+.+
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (357)
T 3i2n_A 240 DMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL 319 (357)
T ss_dssp EEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred eCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence 998766544332 112345799999999998 8999999999999998754 24556777
Q ss_pred ccccceeeeecCCcccccccccCCceeecCCCCCCcccce-eeccccccceecee
Q 001358 663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI-SVEAENKSEVEKPL 716 (1092)
Q Consensus 663 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-s~~~d~~i~~w~~~ 716 (1092)
|...|.+++|+ |+++.++ +++.|+.+++|++.
T Consensus 320 ~~~~v~~~~~s----------------------~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 320 STQPISSLDWS----------------------PDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp CSSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCeeEEEEc----------------------CCCCeEEEEecCCCcEEEEECC
Confidence 88888888886 7788888 89999999999976
No 93
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-30 Score=286.47 Aligned_cols=281 Identities=15% Similarity=0.174 Sum_probs=247.0
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
.+.+|...|.+++| |++++|++++.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 37899999999999 999999999999999999998875444 5678999999999999999 89999999999999
Q ss_pred ECCCC---ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEec-CCCEEEE
Q 001358 471 DAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFS 546 (1092)
Q Consensus 471 d~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~ 546 (1092)
++... +.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.+++++| +++++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 98754 667888999999999998 346999999999999999 5666777888999999999998 9999999
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEee-ccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCC
Q 001358 547 CGTSKEGESFLVEWNESEGAIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
++. ++.|++|| .++....+.. +. ..+.+++|+|++. +++++.||.|++||+.+++.+..+..+. ..+
T Consensus 161 ~~~----d~~i~i~d--~~~~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i 228 (313)
T 3odt_A 161 ASA----DKTIKLWQ--NDKVIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFV 228 (313)
T ss_dssp EET----TSCEEEEE--TTEEEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS--SCE
T ss_pred EEC----CCCEEEEe--cCceEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC--ceE
Confidence 986 56699999 5666677776 44 8899999999987 9999999999999999999999988664 469
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeec
Q 001358 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1092)
.+++|+|++ .+++++.||.|++||+.+++....+..+...+.+++++ |+++ +++++
T Consensus 229 ~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~-~~~~~ 284 (313)
T 3odt_A 229 YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM----------------------SNGD-IIVGS 284 (313)
T ss_dssp EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC----------------------TTSC-EEEEE
T ss_pred EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc----------------------cCCC-EEEEe
Confidence 999999999 58899999999999999999999999999999999886 5666 66789
Q ss_pred cccccceeceeecc
Q 001358 706 AENKSEVEKPLFAR 719 (1092)
Q Consensus 706 ~d~~i~~w~~~~~~ 719 (1092)
.|+.+++|++....
T Consensus 285 ~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 285 SDNLVRIFSQEKSR 298 (313)
T ss_dssp TTSCEEEEESCGGG
T ss_pred CCCcEEEEeCCCCc
Confidence 99999999987543
No 94
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.3e-31 Score=295.74 Aligned_cols=287 Identities=9% Similarity=0.053 Sum_probs=242.4
Q ss_pred EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
....+|.+.|++++|+|+++ +|++|+.|+.|+|||+.++...... ..+.+|...|.+++|+|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~ 67 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDN 67 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEES
T ss_pred ecccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCC
Confidence 44568999999999999998 6899999999999999988722110 014479999999999999
Q ss_pred CC-EEEEEeCCCEEEEEEc-cCCCCccceEEecc--cccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC---------
Q 001358 408 GS-LLGVAYSKHIVQLYAY-HGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--------- 474 (1092)
Q Consensus 408 g~-~las~~~d~~i~iwd~-~~~~~~~~~~~l~~--h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~--------- 474 (1092)
++ +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| ++ .+++++.|+.|++||+.+
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred CCcEEEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEccccccccccccc
Confidence 99 9999999999999999 87643 36778 999999999999 77 899999999999999988
Q ss_pred CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC-CCc--eEEecCCCCceEEEEEec-CCCEEEEEecC
Q 001358 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGA--RVDYDAPGLGCTRMAYSA-NGRRLFSCGTS 550 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~--~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~ 550 (1092)
++++..+. |...|.+++|++ ++ +++++.||.|++||++. ... ......+...+.+++|+| +++++++++.
T Consensus 141 ~~~~~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~- 214 (342)
T 1yfq_A 141 NLNSNNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI- 214 (342)
T ss_dssp ESCSSSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-
T ss_pred CCeeeEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-
Confidence 77777776 889999999964 43 99999999999999988 443 335556777899999999 9999999986
Q ss_pred CCCceeEEEEeCCCC------eEEEEEeeccc------cCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001358 551 KEGESFLVEWNESEG------AIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~------~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
++.|++|+...+ +....+..|.. +...|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 215 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 215 ---DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp ---TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ---CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence 667999999887 77788888751 124899999999999999999999999999999999888875
Q ss_pred CCCCCCCceEEEccCCCEEEEEeCCCe-EEEEE
Q 001358 619 GGGLPENPRICFNKNGTLLAVIANENR-IKILE 650 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iw~ 650 (1092)
+. ...|.+++ |++++|++++.||. .+.+.
T Consensus 292 ~h-~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 292 FN-EDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CS-SSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cc-CCCceEec--CCCCeEEEEecCCccccccc
Confidence 51 24588888 99999999999998 55444
No 95
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=7.1e-31 Score=296.33 Aligned_cols=294 Identities=17% Similarity=0.207 Sum_probs=242.5
Q ss_pred CCcceeEecccCCCCceEEeecCC---CceEEEEEcCcCcEEEEecCC-CCceeeeeeeeeecccccceeEEeeecCCCC
Q 001358 322 FPKTVAQTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spd---g~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
.|...+..+.+|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|..
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~ 87 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTG 87 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSS
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccC
Confidence 456677899999999999999999 56 799999999999999998 443311 2667999
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEe--eCCCCcEEEEEEeCCCcEEEEECCCC
Q 001358 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~--s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
.|.+++|+|++++|++++.|+.|++||+.+++.+. +.+|...|.+++| +|+++ ++++++.|+.|++||+.++
T Consensus 88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCS
T ss_pred CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCC
Confidence 99999999999999999999999999999876443 5679999999999 88888 8999999999999999999
Q ss_pred ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEecCCCE----EEEEec
Q 001358 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRR----LFSCGT 549 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg~~----l~~~~~ 549 (1092)
+.+..+..+. .+.++.+. ...+++++.++.+++|+++......... .....+..+++.++... +++++.
T Consensus 162 ~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 162 NPMMVLQLPE-RCYCADVI----YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp SCSEEEECSS-CEEEEEEE----TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred cEEEEEecCC-CceEEEec----CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 9999998765 55566553 2478999999999999998766544332 23446677777776654 888875
Q ss_pred CCCCceeEEEEeCCCC---eEEEEEeecccc---------CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001358 550 SKEGESFLVEWNESEG---AIKRTYQGLQLQ---------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~---~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
++.|++||.... ..+..+.+|... ...|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 237 ----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (368)
T 3mmy_A 237 ----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE 312 (368)
T ss_dssp ----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred ----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence 677999999987 556677776610 1169999999999999999999999999999999998887
Q ss_pred CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
.+. ..|.+++|+|+|++|++++.|+..+.|+.
T Consensus 313 ~~~--~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 313 QLD--QPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CCS--SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CCC--CCceEEEECCCCCeEEEEecccccccccc
Confidence 653 46999999999999999999875555443
No 96
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=9e-31 Score=302.37 Aligned_cols=280 Identities=21% Similarity=0.311 Sum_probs=241.6
Q ss_pred EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
....+|...|.|++| |++ ++++|+.||+|++||+.+++.+.. +.+|...|.+++| +
T Consensus 127 ~~~~~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~ 182 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--D 182 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--C
T ss_pred ecccCCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--C
Confidence 344567778999887 777 699999999999999999987765 7789999999999 8
Q ss_pred CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee---EEEecC
Q 001358 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGH 484 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~---~~~~~~ 484 (1092)
+++|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++||+.+++.. ..+.+|
T Consensus 183 ~~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 255 (435)
T 1p22_A 183 ERVIITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255 (435)
T ss_dssp SSEEEEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence 9999999999999999999987554 6789999999999974 4 7999999999999999988766 677899
Q ss_pred CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC
Q 001358 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
...|.++++ ++.++++++.||.|++||+++.+....+..+...+.++.+ +++++++++. ++.|++||..+
T Consensus 256 ~~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~ 325 (435)
T 1p22_A 256 RAAVNVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIEC 325 (435)
T ss_dssp SSCEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTT
T ss_pred CCcEEEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCC
Confidence 999999988 5579999999999999999999999999999999999988 4789999886 66799999999
Q ss_pred CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------eEEEEeCCCCCCCCceEEEccCCC
Q 001358 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------LLTTIDAGGGLPENPRICFNKNGT 635 (1092)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1092)
++.+..+.+|. ..|.+++| ++.++++|+.||.|++||+.++. .+..+..|. ..|.+++| ++.
T Consensus 326 ~~~~~~~~~h~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~--~~~ 396 (435)
T 1p22_A 326 GACLRVLEGHE---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQF--DEF 396 (435)
T ss_dssp CCEEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEE--CSS
T ss_pred CCEEEEEeCCc---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC--CCeEEEEe--CCC
Confidence 99999999887 88999998 67899999999999999997766 777776554 46899999 788
Q ss_pred EEEEEeCCCeEEEEECCCCCee
Q 001358 636 LLAVIANENRIKILETPESNSV 657 (1092)
Q Consensus 636 ~l~~~~~dg~i~iw~~~~~~~~ 657 (1092)
++++++.||.|++||+.+....
T Consensus 397 ~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 397 QIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp CEEECCSSSEEEEEC-------
T ss_pred EEEEEeCCCEEEEEECCCCCCc
Confidence 9999999999999999876443
No 97
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-30 Score=299.81 Aligned_cols=281 Identities=19% Similarity=0.237 Sum_probs=242.4
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce
Q 001358 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 477 (1092)
..+.|+||++ ++||+|. |++|+|||..+|+..... .+.+|...|++++|+|||+ +|++|+.|++|+|||+++++.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~-~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEE-EecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 4677999986 5788775 899999999999765432 4567888999999999999 899999999999999999999
Q ss_pred eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEEEEecCCCCcee
Q 001358 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1092)
+..+.+|...+.++++ ++.+|++|+.|+.+++||...... ...+..|...+..+.++|+++++++++. ++.
T Consensus 182 ~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~----D~~ 253 (420)
T 4gga_A 182 LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNL 253 (420)
T ss_dssp EEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred EEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----ccc
Confidence 9999999999999877 446999999999999999987554 4577889999999999999999999986 667
Q ss_pred EEEEeCCCCeE----EEEEeeccccCCceEEEEEcCCCCEE-EE--EeCCCeEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001358 557 LVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQI-LA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 557 i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
+++|+..+++. +.....|. ..|.+++|+|.+..+ ++ |+.|++|++||+.+++....+..+. .+.++.
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~ 327 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSIL 327 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEEEEE
T ss_pred ceEEeeccccccceeeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---ceeeee
Confidence 99999987753 34455555 899999999987554 44 3579999999999999999887653 488999
Q ss_pred EccCCCEEEEEe--CCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358 630 FNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 630 ~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
|+|+++.+++++ .|+.|+|||+.+++.+..+.+|...|.+++|+ |||+++++++.|
T Consensus 328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D 385 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAAD 385 (420)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecC
Confidence 999999998876 68999999999999999999999999999996 789999999999
Q ss_pred cccceeceeecc
Q 001358 708 NKSEVEKPLFAR 719 (1092)
Q Consensus 708 ~~i~~w~~~~~~ 719 (1092)
++|++|++....
T Consensus 386 ~tvriWdv~~~~ 397 (420)
T 4gga_A 386 ETLRLWRCFELD 397 (420)
T ss_dssp TEEEEECCSCSS
T ss_pred CeEEEEECCCCC
Confidence 999999976443
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=1.2e-30 Score=298.22 Aligned_cols=298 Identities=13% Similarity=0.169 Sum_probs=241.9
Q ss_pred CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-CCCEEEE
Q 001358 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGV 413 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las 413 (1092)
....+++++|+...++++|+.||.|+||++........ . ...+.+|...|.+++|+| ++++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~-~--------------~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK-N--------------VPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT-T--------------CCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC-C--------------CceEecCCCCEEEEEeCCCCCCEEEE
Confidence 35667999999876777789999999999966432210 0 012678999999999999 9999999
Q ss_pred EeCCCEEEEEEccCCCCc----cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE--ecCCcc
Q 001358 414 AYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAP 487 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~----~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~~~ 487 (1092)
|+.||+|+|||+.++... .....+.+|...|.+++|+|+++. +|++++.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987432 233468899999999999999843 7999999999999999999999999 889999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCc-eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
|.+++|++ ++.+|++++.||.|++||+++.+....+ ..+... +..++|+|++++++++.. +..++.|++||..++
T Consensus 179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBC
T ss_pred eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccc
Confidence 99999965 7789999999999999999998888777 566654 899999999999888732 123788999999987
Q ss_pred eE-EEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCce-EEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358 566 AI-KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 566 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
+. +...... +...+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++ .
T Consensus 256 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~ 331 (402)
T 2aq5_A 256 EEPLSLQELD--TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K 331 (402)
T ss_dssp SSCSEEEECC--CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred cCCceEEecc--CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence 65 3333321 1367999999999999975 55799999999999884 555544444467999999999998764 5
Q ss_pred CCeEEEEECCCCC
Q 001358 643 ENRIKILETPESN 655 (1092)
Q Consensus 643 dg~i~iw~~~~~~ 655 (1092)
++.+++|++.++.
T Consensus 332 ~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 332 CEIARFYKLHERK 344 (402)
T ss_dssp TEEEEEEEEETTE
T ss_pred ceeEEEEEcCCCc
Confidence 6799999998763
No 99
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=2.6e-31 Score=291.84 Aligned_cols=251 Identities=18% Similarity=0.318 Sum_probs=205.6
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEE
Q 001358 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~ 468 (1092)
++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999886421 23468899999999999863 77 799999999999
Q ss_pred EEECCCC--ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEecC---
Q 001358 469 VWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN--- 540 (1092)
Q Consensus 469 vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d--- 540 (1092)
+||++++ +.+..+.+|...|.+++|++..++.+|++++.||+|++||+..... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 9999987 4667888999999999998876688999999999999999987643 2345667778999999998
Q ss_pred --------------CCEEEEEecCCCCceeEEEEeCCCC---eEEEEEeeccccCCceEEEEEcCCC----CEEEEEeCC
Q 001358 541 --------------GRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDD 599 (1092)
Q Consensus 541 --------------g~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~d 599 (1092)
+++|++++. ++.|++||...+ +.+..+.+|. ..|.+++|+|++ .+|++++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~---~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHS---DWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCS---SCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCC---CceEEEEecCCCCCCCceEEEEcCC
Confidence 468888875 667999999765 4566777777 899999999986 789999999
Q ss_pred CeEEEEECCCCc----eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358 600 HVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 600 g~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
++|++|++.+.. ....+..+ ...|.+++|+|++++|++++.|+.|++|+...
T Consensus 238 ~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 238 GRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999999987631 11223322 34689999999999999999999999999763
No 100
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=7.2e-30 Score=285.69 Aligned_cols=264 Identities=10% Similarity=0.117 Sum_probs=222.3
Q ss_pred EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp- 406 (1092)
..+.+|++.|++++|+|+|+ +||+|+.||.|+|||+.++...... ...+.+|...|.+++|+|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~ 68 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWASP 68 (351)
T ss_dssp CEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECCG
T ss_pred ccCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcCC
Confidence 56789999999999999998 6899999999999999987543211 112678999999999999
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCCCc------cceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEEEEECCCCce
Q 001358 407 -DGSLLGVAYSKHIVQLYAYHGGSDA------RQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR 477 (1092)
Q Consensus 407 -dg~~las~~~d~~i~iwd~~~~~~~------~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~~ 477 (1092)
|+++|++++.|+.|++||+.+++.. .....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++.
T Consensus 69 ~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~ 146 (351)
T 3f3f_A 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSD 146 (351)
T ss_dssp GGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTC
T ss_pred CCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHH
Confidence 6999999999999999999987431 334567899999999999999 88 899999999999999998876
Q ss_pred eEEEe-------------cCCcceEEEeeccc-CCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEecCC
Q 001358 478 TYSFE-------------GHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG 541 (1092)
Q Consensus 478 ~~~~~-------------~~~~~v~~i~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~dg 541 (1092)
+..+. +|...+.+++|++. .++.++++++.++.+.+|+...... ...+..|...|.+++|+|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~ 226 (351)
T 3f3f_A 147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSI 226 (351)
T ss_dssp TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCS
T ss_pred hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCC
Confidence 65443 57888999999764 1367999999999998888777665 55677788899999999998
Q ss_pred ----CEEEEEecCCCCceeEEEEeCCCC----------------------------------------------eEEEEE
Q 001358 542 ----RRLFSCGTSKEGESFLVEWNESEG----------------------------------------------AIKRTY 571 (1092)
Q Consensus 542 ----~~l~~~~~~~~~~~~i~iwd~~~~----------------------------------------------~~~~~~ 571 (1092)
++|++++. ++.|++||+.++ +.+..+
T Consensus 227 ~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (351)
T 3f3f_A 227 GRWYQLIATGCK----DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH 302 (351)
T ss_dssp SCSSEEEEEEET----TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred CCcceEEEEEcC----CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence 78999886 667999999875 555666
Q ss_pred eeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Q 001358 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1092)
.+|. ..|.+++|+|++++|++++.||.|++|++.+++....+
T Consensus 303 ~~h~---~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 303 DDHN---GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp CTTS---SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred eccc---ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 6666 89999999999999999999999999999988766554
No 101
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.5e-30 Score=293.00 Aligned_cols=285 Identities=15% Similarity=0.156 Sum_probs=242.2
Q ss_pred ecCCCCc--EEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358 392 VRDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 392 l~~h~~~--V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
..+|... +.+++|++ ..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~i 160 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDI 160 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEE
Confidence 3355554 45566664 56888889999999999998755422 223889999999999999 8999999999999
Q ss_pred EECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEecCCCEEEEEe
Q 001358 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
||+.+++.+..+.+|...|.+++| ++.++++++.||.|++||++. ......+..|...|.+++|+|+++++++++
T Consensus 161 wd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 161 YDVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EECcCCeEEEEecCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 999999999999999999999998 346999999999999999994 555667888999999999999999999998
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE-Ee--CCCeEEEEECCCCceEEEEeCCCCCCCC
Q 001358 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AG--DDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
. ++.|++||+.+++.+..+..|. ..|.+++|+|++..+++ ++ .|+.|++||+.+++.+..+..+ ..+
T Consensus 237 ~----d~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v 306 (401)
T 4aez_A 237 N----DNVVQIWDARSSIPKFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQV 306 (401)
T ss_dssp T----TSCEEEEETTCSSEEEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCE
T ss_pred C----CCeEEEccCCCCCccEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcE
Confidence 6 5679999999999999888877 89999999998765554 44 6999999999999999888754 358
Q ss_pred ceEEEccCCCEEEEEe--CCCeEEEEECCCCCeee--ecccccccceeeeecCCcccccccccCCceeecCCCCCCcccc
Q 001358 626 PRICFNKNGTLLAVIA--NENRIKILETPESNSVD--AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
.+++|+|+++++++++ .||.|++|++.++.... .+.+|...+.+++++ |+++++
T Consensus 307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l 364 (401)
T 4aez_A 307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS----------------------PDGRIL 364 (401)
T ss_dssp EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC----------------------TTSSEE
T ss_pred EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC----------------------CCCCEE
Confidence 9999999999999954 89999999999865444 456888889888886 789999
Q ss_pred eeeccccccceeceeec
Q 001358 702 ISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 702 ~s~~~d~~i~~w~~~~~ 718 (1092)
++++.|+.+++|++..+
T Consensus 365 ~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 365 STAASDENLKFWRVYDG 381 (401)
T ss_dssp EEECTTSEEEEEECCC-
T ss_pred EEEeCCCcEEEEECCCC
Confidence 99999999999998743
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=4.7e-30 Score=298.25 Aligned_cols=253 Identities=14% Similarity=0.227 Sum_probs=208.0
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCC--------ccceEEecccc------------cceeEEEeeCCC-
Q 001358 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHV------------GNVNDLAFSAPC- 453 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~l~~h~------------~~v~~~~~s~d~- 453 (1092)
|.+.|.+++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 678999999999999999999999999999998752 11344678998 889999999998
Q ss_pred -CcEEEEEEeCCCcEEEEECCCCcee---------------------------------------EE-EecCCcceEEEe
Q 001358 454 -KQISVITCGDDKTIKVWDAVTGSRT---------------------------------------YS-FEGHGAPVYSLC 492 (1092)
Q Consensus 454 -~~l~l~s~~~d~~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~v~~i~ 492 (1092)
. .+++++.|++|++||+.++... .. ..+|...|.+++
T Consensus 107 ~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred cc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 5 7999999999999998765432 12 367999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEE--------ecCCCCceEEEEEecCC-CEEEEEecCCCCceeEEEEeCC
Q 001358 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
|++ ++.+|+++ .||.|++||++....... +..|...|.+++|+|++ ++|++++. ++.|++||+.
T Consensus 185 ~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~ 257 (447)
T 3dw8_B 185 INS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDMR 257 (447)
T ss_dssp ECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEETT
T ss_pred EcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEECc
Confidence 965 67899998 799999999985443332 55778899999999999 89999986 5679999999
Q ss_pred CCeE----EEEEeeccc---------cCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCC-----
Q 001358 564 EGAI----KRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPE----- 624 (1092)
Q Consensus 564 ~~~~----~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~----- 624 (1092)
+++. +..+.++.. +...|.+++|+|+++++++++. +.|++||+.+ ++.+..+..+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence 9887 677877660 0128999999999999999999 9999999997 888888876643111
Q ss_pred --------CceEEEccCCCEEEEEeCCCeEEEEECCCCCee
Q 001358 625 --------NPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1092)
Q Consensus 625 --------v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 657 (1092)
+..++|+|++++|++++.||.|++||+.+++.+
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 234999999999999999999999999988665
No 103
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.8e-29 Score=278.41 Aligned_cols=277 Identities=19% Similarity=0.252 Sum_probs=236.9
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
.++|+||+++ +||+| .|++|+|||+++++.++.. .+.+|...|++++|+|+++ ++++|+.|++|++||+++++.+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence 5679999986 77776 5899999999999866533 4567888999999999999 8999999999999999999999
Q ss_pred EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeE
Q 001358 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
..+.+|...+.++.+ ++..+++++.++.+++|+...... ...+..|...+..+.++++++++++++. ++.|
T Consensus 103 ~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i 174 (318)
T 4ggc_A 103 RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLV 174 (318)
T ss_dssp EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec----Ccce
Confidence 999999999988765 346899999999999999887654 4567888899999999999999999986 6679
Q ss_pred EEEeCCCCeEE----EEEeeccccCCceEEEEEcCCCCEEE---EEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358 558 VEWNESEGAIK----RTYQGLQLQHNSVSVVHFDTAKDQIL---AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 558 ~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~---~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
++||..+++.. .....+ ...|.++.++|++..++ +++.+++|++||............. ..+..++|
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~---~~v~~~~~ 248 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQH---QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILW 248 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCC---CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS---SCEEEEEE
T ss_pred eEEECCCCcccccceeeeccc---CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce---eeeeeeee
Confidence 99999887643 233333 37899999999876554 4668899999999998887776544 34889999
Q ss_pred ccCCCEEEEEe--CCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccc
Q 001358 631 NKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1092)
Q Consensus 631 s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 708 (1092)
+|++..+++++ .|+.|++||+.+++.+..+.+|...|.+++|+ ||++++++++.|+
T Consensus 249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D~ 306 (318)
T 4ggc_A 249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAADE 306 (318)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETTT
T ss_pred cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecCC
Confidence 99999888765 68999999999999999999999999999996 7899999999999
Q ss_pred ccceecee
Q 001358 709 KSEVEKPL 716 (1092)
Q Consensus 709 ~i~~w~~~ 716 (1092)
+|++||+.
T Consensus 307 ~v~iWd~~ 314 (318)
T 4ggc_A 307 TLRLWRCF 314 (318)
T ss_dssp EEEEECCS
T ss_pred eEEEEECC
Confidence 99999975
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.7e-30 Score=289.21 Aligned_cols=255 Identities=17% Similarity=0.302 Sum_probs=217.7
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v 469 (1092)
+.+|...|.+++|+|++++||+|+.||.|+|||+..+. ......+.+|...|++++|+++ ++ +|++++.|+.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 77899999999999999999999999999999998432 2333468899999999999987 77 8999999999999
Q ss_pred EECCCCc--eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEec------
Q 001358 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 539 (1092)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~------ 539 (1092)
||+.+++ .+..+.+|...|.+++|++..++.+|++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999997 77888899999999999776437899999999999999998874 4456677888999999999
Q ss_pred -------CCCEEEEEecCCCCceeEEEEeCCCCe----EEEEEeeccccCCceEEEEEcCC---CCEEEEEeCCCeEEEE
Q 001358 540 -------NGRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 605 (1092)
Q Consensus 540 -------dg~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~iw 605 (1092)
++.++++++. ++.|++||+.++. ....+.+|. ..|.+++|+|+ ++++++++.||.|++|
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 6999999986 5569999998764 445566666 89999999999 8999999999999999
Q ss_pred ECCCCc---eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCe
Q 001358 606 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1092)
Q Consensus 606 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 656 (1092)
|+.++. .........+...+.+++|+|++++|++++.||.|++|++.....
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 999875 333333333456789999999999999999999999999885543
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.7e-30 Score=289.69 Aligned_cols=263 Identities=13% Similarity=0.151 Sum_probs=216.6
Q ss_pred eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
+..++.+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+..... ..+.+|...|.+++|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~-----------------~~~~~h~~~v~~~~~~ 64 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWA 64 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEEC
T ss_pred ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceee-----------------eEecCCCCcEEEEEeC
Confidence 4577899999999999999998 689999999999999984332211 1277899999999999
Q ss_pred CC--CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEEEEECCCCc--eeE
Q 001358 406 PD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTY 479 (1092)
Q Consensus 406 pd--g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~--~~~ 479 (1092)
|+ +++|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. ...
T Consensus 65 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~ 141 (379)
T 3jrp_A 65 HPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPI 141 (379)
T ss_dssp CGGGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEE
T ss_pred CCCCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeE
Confidence 87 999999999999999999987521 23367789999999999999 88 89999999999999999874 445
Q ss_pred EEecCCcceEEEeecccC-----------CccEEEEEecCCeEEEEEcCCCCce----EEecCCCCceEEEEEecC---C
Q 001358 480 SFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSAN---G 541 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~d---g 541 (1092)
.+.+|...|.+++|++.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+ +
T Consensus 142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 221 (379)
T 3jrp_A 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 221 (379)
T ss_dssp EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence 677899999999997742 5789999999999999999876543 466778899999999999 8
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE
Q 001358 542 RRLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 613 (1092)
++|++++. ++.|++||+.++... ........+...|.+++|+|+++++++++.||.|++|++..+...
T Consensus 222 ~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 222 SYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp EEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred CeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 99999986 566999999887421 112121123478999999999999999999999999999855433
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.8e-29 Score=291.49 Aligned_cols=274 Identities=16% Similarity=0.243 Sum_probs=238.9
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEEC
Q 001358 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 472 (1092)
.+|...|.+++| |+++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ ++++|+.||+|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 357778998887 89999999999999999999987554 68899999999999 677 8999999999999999
Q ss_pred CCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEecCCCEEEEEec
Q 001358 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
.+++.+..+.+|...|.+++|+ +.++++++.||.|++||+.+.... ..+..+...|.++++ +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 9999999999999999999984 359999999999999999987765 567788889999998 7889999986
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001358 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
++.|++||+.+++.+..+.+|. ..|.++.++ ++++++|+.||.|++||+.+++.+..+..+. ..|.+++
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~ 343 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIR 343 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEE
T ss_pred ----CCeEEEEECCcCcEEEEEcCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEE
Confidence 6779999999999999999887 889999984 6799999999999999999999999988654 4588888
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCC---------eeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccc
Q 001358 630 FNKNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 700 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 700 (1092)
| ++.++++++.||.|++||+.++. .+..+.+|...|.++++. ++.
T Consensus 344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------------------------~~~ 397 (435)
T 1p22_A 344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EFQ 397 (435)
T ss_dssp C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SSC
T ss_pred e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC------------------------CCE
Confidence 8 78999999999999999987655 677778888888777663 678
Q ss_pred ceeeccccccceeceeec
Q 001358 701 EISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 701 l~s~~~d~~i~~w~~~~~ 718 (1092)
+++++.||.|++||+...
T Consensus 398 l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 398 IVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEECCSSSEEEEEC----
T ss_pred EEEEeCCCEEEEEECCCC
Confidence 999999999999998754
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=285.59 Aligned_cols=290 Identities=17% Similarity=0.152 Sum_probs=238.7
Q ss_pred ecCCCCcEEEEEECCC---CCEEEEEeCCCEEEEEEccC-CCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcE
Q 001358 392 VRDPGVSVNRVVWSPD---GSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd---g~~las~~~d~~i~iwd~~~-~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
+.+|...|.+++|+|+ |++|++|+.||.|++||+.+ +..+ ...+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v 110 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--PKAQQMHTGPVLDVCWSDDGS--KVFTASCDKTA 110 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--EEEEEECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--EEEeccccCCEEEEEECcCCC--EEEEEcCCCcE
Confidence 7789999999999999 69999999999999999997 4322 135778999999999999999 89999999999
Q ss_pred EEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEE
Q 001358 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.+ ..++++
T Consensus 111 ~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 186 (368)
T 3mmy_A 111 KMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVA 186 (368)
T ss_dssp EEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEE
T ss_pred EEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEE
Confidence 999999998776 5579999999999777788999999999999999999988887777655 555555554 466666
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCE----EEEEeCCCeEEEEECCCC---ceEEEEeCCC
Q 001358 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ----ILAAGDDHVIKIWDMNKV---QLLTTIDAGG 620 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~s~dg~i~iwd~~~~---~~~~~~~~~~ 620 (1092)
+. ++.+.+|+.............. ....+.++.+.++... +++++.||.|++|++... .....+..+.
T Consensus 187 ~~----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 187 TA----ERGLIVYQLENQPSEFRRIESP-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EG----GGCEEEEECSSSCEEEEECCCS-CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred eC----CCcEEEEEeccccchhhhcccc-ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 65 5569999998765443322211 2345666666665554 999999999999999987 4556665543
Q ss_pred CC----------CCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceee
Q 001358 621 GL----------PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690 (1092)
Q Consensus 621 ~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 690 (1092)
.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...+.+++|+
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s----------------- 324 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN----------------- 324 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC-----------------
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC-----------------
Confidence 21 158999999999999999999999999999999999999999999999996
Q ss_pred cCCCCCCcccceeeccccccceecee
Q 001358 691 NEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 691 ~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1092)
|+++++++++.|+..+.|++.
T Consensus 325 -----~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 325 -----HNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp -----TTSSCEEEEECCCSTTCGGGC
T ss_pred -----CCCCeEEEEeccccccccccc
Confidence 789999999999887777644
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.4e-29 Score=281.34 Aligned_cols=259 Identities=13% Similarity=0.206 Sum_probs=218.3
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCc-cceEEecccccceeEEEeeC--CCCcEEEEEEeCCCcE
Q 001358 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTI 467 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i 467 (1092)
++.+|...|.+++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| |++ +|++++.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 47899999999999999999999999999999999976432 33446789999999999999 588 89999999999
Q ss_pred EEEECCCC---------ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec------------
Q 001358 468 KVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------------ 526 (1092)
Q Consensus 468 ~vwd~~~~---------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------ 526 (1092)
++||+.++ +.+..+.+|...|.+++|++..++.++++++.||.|++||+++.+....+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999987 567888999999999999775337899999999999999998776543221
Q ss_pred -CCCCceEEEEEecC---CCEEEEEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCC----CEEEEE
Q 001358 527 -APGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAK----DQILAA 596 (1092)
Q Consensus 527 -~~~~~i~~~~~s~d---g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~ 596 (1092)
.+...+.+++|+|+ +.++++++. ++.+.+|+...+.. +..+.+|. ..|.+++|+|++ ++++++
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~p~~~~~~~~l~s~ 236 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHK---SLIRSISWAPSIGRWYQLIATG 236 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCC---SCEEEEEECCCSSCSSEEEEEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCC---cceeEEEECCCCCCcceEEEEE
Confidence 45668999999997 899999876 66688888777765 55666666 899999999998 799999
Q ss_pred eCCCeEEEEECCCC----------------------------------------------ceEEEEeCCCCCCCCceEEE
Q 001358 597 GDDHVIKIWDMNKV----------------------------------------------QLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 597 s~dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~v~~ 630 (1092)
+.||.|++||+.++ +.+..+..| ...|.+++|
T Consensus 237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~ 314 (351)
T 3f3f_A 237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH--NGEVWSVSW 314 (351)
T ss_dssp ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT--SSCEEEEEE
T ss_pred cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc--cccEEEEEE
Confidence 99999999999875 444555544 456999999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCCeeeec
Q 001358 631 NKNGTLLAVIANENRIKILETPESNSVDAA 660 (1092)
Q Consensus 631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 660 (1092)
+|++++|++++.||.|++|++.++..+..+
T Consensus 315 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 315 NLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp CSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred cCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 999999999999999999999987655544
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.2e-29 Score=281.01 Aligned_cols=285 Identities=10% Similarity=-0.001 Sum_probs=240.0
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
..+|.+.|.+++|+|++++|++++.|+.|++||+.++........+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 5579999999999999999999999999999999987633233356689999999999999872 388899999999999
Q ss_pred C-CCCceeEEEec--CCcceEEEeecccCCccEEEEEecCCeEEEEEcCC---------CCceEEecCCCCceEEEEEec
Q 001358 472 A-VTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------LGARVDYDAPGLGCTRMAYSA 539 (1092)
Q Consensus 472 ~-~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~i~~~~~s~ 539 (1092)
+ .+++. ..+.+ |...|.+++|++ +.++++++.||.|++||+++ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77755 77888 999999999976 57999999999999999987 55555555 777899999999
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCC-CeE--EEEEeeccccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-----
Q 001358 540 NGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV----- 610 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~----- 610 (1092)
++ +++++. ++.|++||+.+ +.. ......+. ..+.+++|+| +++++++++.||.|++|++...
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCC---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 88 777765 66799999988 553 22333333 7899999999 9999999999999999999887
Q ss_pred -ceEEEEeCCCC-------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccc-cccceeeeecCCcccccc
Q 001358 611 -QLLTTIDAGGG-------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGA 681 (1092)
Q Consensus 611 -~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~ 681 (1092)
+....+..+.. ...|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|.+++ |
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~------- 302 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C------- 302 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-------
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-------
Confidence 77777776643 337899999999999999999999999999999999999888 88887766 2
Q ss_pred cccCCceeecCCCCCCcccceeeccccc-cceece
Q 001358 682 GIANGSVSVNEDPKEDVKPEISVEAENK-SEVEKP 715 (1092)
Q Consensus 682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~-i~~w~~ 715 (1092)
+++++++++.|+. .+.+..
T Consensus 303 ---------------~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 303 ---------------SDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ---------------CSSEEEEEEECTHHHHCSSS
T ss_pred ---------------CCCeEEEEecCCcccccccc
Confidence 5788999999998 777664
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-28 Score=283.92 Aligned_cols=305 Identities=11% Similarity=-0.003 Sum_probs=234.1
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCC---ceeeeeeee---eeccc---------------------------
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ---KLFIRNFKV---WDIGA--------------------------- 382 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~---~~~~~~~~~---~d~~~--------------------------- 382 (1092)
++.+++|+|||+ +|+++ .++.|++||+.+|+ .+....... +....
T Consensus 6 p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 6 PLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred cEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 899999999999 56555 46899999999998 443321100 00000
Q ss_pred -----ccceeEEeeecCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEEcc--CCCCccceEEecccccceeEEEeeCCCC
Q 001358 383 -----CSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAFSAPCK 454 (1092)
Q Consensus 383 -----~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~--~~~~~~~~~~l~~h~~~v~~~~~s~d~~ 454 (1092)
...........+|...|.+++|+|+|++| |+++.|+.|+|||+. +++.+.... ...|...|.+++|+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEEcCCCC
Confidence 00000111234677789999999999996 889999999999999 776655321 125778999999999999
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeE----EEecCCcceEEEeeccc-CCccEEEEEecCCeEEEEEcCCCCceEE-ecCC
Q 001358 455 QISVITCGDDKTIKVWDAVTGSRTY----SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGARVD-YDAP 528 (1092)
Q Consensus 455 ~l~l~s~~~d~~i~vwd~~~~~~~~----~~~~~~~~v~~i~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~ 528 (1092)
+|++|+.|+.|++|++.+++... .+.+|...|.+++|++. ..+.+|++++.|+.|++||+.+...... +..|
T Consensus 163 --~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h 240 (450)
T 2vdu_B 163 --TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH 240 (450)
T ss_dssp --EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred --EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence 89999999999999998887554 77899999999999774 2268999999999999999998887776 5678
Q ss_pred CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc----------------------ccCCceEEEEE
Q 001358 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----------------------LQHNSVSVVHF 586 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------------------~~~~~v~~~~~ 586 (1092)
...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. .....|..++|
T Consensus 241 ~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 241 KHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp SSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred CCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 8999999999 9999999986 6789999999999988887432 12356899999
Q ss_pred cCCCCEEEEEe-CCCeEEEEEC--CCC---ceEEEEeCCCCCCCCceEEEccCCCEEEEEeC------CCeEEEEECCC
Q 001358 587 DTAKDQILAAG-DDHVIKIWDM--NKV---QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKILETPE 653 (1092)
Q Consensus 587 ~~~~~~l~~~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw~~~~ 653 (1092)
+|+++++++++ .++.|++|++ .++ ..+..+..+ ..+.+++|+|++.++++++. +..|.+|.+..
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999999998 8999999999 555 566667655 45899999996544443332 45578887653
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.5e-27 Score=271.68 Aligned_cols=349 Identities=12% Similarity=0.076 Sum_probs=259.1
Q ss_pred eEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEEcc
Q 001358 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH 426 (1092)
Q Consensus 348 ~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~ 426 (1092)
+++++++.|+.|++||+.+++.+.. +.+| ..+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 5889999999999999999987754 3344 458999999999987 566689999999999
Q ss_pred CCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEE-EEE
Q 001358 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSI 505 (1092)
Q Consensus 427 ~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~ 505 (1092)
+++.+. .+..+. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..+ ..+.+++|++ +++.+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEEe
Confidence 987554 444444 8999999999994 3456667899999999999998888755 4678888854 56666 788
Q ss_pred ecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001358 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1092)
Q Consensus 506 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 585 (1092)
+.++.|++||+.+.+....+..+ ..+..++|+|++++++.++. .++.|++||+.+++.+..+..+ ..+.+++
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~ 206 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE----AAPSGIA 206 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SEEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC----CCccceE
Confidence 88999999999988777766654 45689999999998865442 2667999999999888777643 5789999
Q ss_pred EcCCCCEEEEEe---CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCCeeeecc
Q 001358 586 FDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 586 ~~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
|+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+.
T Consensus 207 ~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 999999999987 68999999999999988887653 36889999999987 566789999999999998887776
Q ss_pred cccccce---eeeecCCcccccccccCCceeecCCC----CCCc--ccceeeccccccceeceeeccCccceecccCCcc
Q 001358 662 VLSDNLR---KLSVNPISTVTGAGIANGSVSVNEDP----KEDV--KPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 732 (1092)
Q Consensus 662 ~~~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~----s~d~--~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 732 (1092)
.+..+.. .+...|.+.... ...|.... .+.. ..+...+.+...++|++..+....
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~------~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~---------- 347 (391)
T 1l0q_A 284 VGKNPYASGQFIGSIPVQPVYP------SADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK---------- 347 (391)
T ss_dssp CSSSEECCSSCEEECSSCCCCC------BCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC----------
T ss_pred CCcCCCccceeeeccccccccc------ccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC----------
Confidence 6554432 123333222110 11111110 0111 335556667888999976432211
Q ss_pred ccccEEEEEEecCCcEEEEee
Q 001358 733 KANKISRLTYNNGGQAIFALA 753 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~ 753 (1092)
+. -....|+++|.+.+...
T Consensus 348 ~~--~~~~~~~~~g~y~~~~~ 366 (391)
T 1l0q_A 348 KQ--NPTHTYSETGIYTVRLT 366 (391)
T ss_dssp SS--SCEECCSSCEEEEEEEE
T ss_pred cC--CCeEEeCCCceEEEEEE
Confidence 11 12357888888765543
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1e-28 Score=275.75 Aligned_cols=282 Identities=13% Similarity=0.120 Sum_probs=216.0
Q ss_pred eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
.+.++.+|.+.|++++|||||+ +||+|+.++ ++|||+.+++..... +...+..++++
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~ 67 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRML 67 (355)
T ss_dssp --------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEEC
T ss_pred CccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEc
Confidence 3456789999999999999998 688888765 789999887655321 22257889999
Q ss_pred CCCCEEE-EEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEec
Q 001358 406 PDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1092)
Q Consensus 406 pdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~ 483 (1092)
+++++++ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+..
T Consensus 68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 68 HRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp TTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred CCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc
Confidence 9998885 56778999999999987655 443 66789999999864 3333 3789999999998 77776655
Q ss_pred CCcceEEEeecccCCccEEEE--EecCCeEEEEEcCCCC----------------ceEEecCCCCceEEEEEecCCCEEE
Q 001358 484 HGAPVYSLCPHAKENIHFIFS--ISVDGKIKAWLYDSLG----------------ARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s--~~~dg~i~vwd~~~~~----------------~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
+...+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|+
T Consensus 139 ---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~ 211 (355)
T 3vu4_A 139 ---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA 211 (355)
T ss_dssp ---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred ---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE
Confidence 333444543 35555 6899999999998765 2567888999999999999999999
Q ss_pred EEecCCCCcee-EEEEeCCCCeEEEEEe-e-ccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE--E-----
Q 001358 546 SCGTSKEGESF-LVEWNESEGAIKRTYQ-G-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T----- 615 (1092)
Q Consensus 546 ~~~~~~~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~----- 615 (1092)
+++. ++. |++||..+++.+..+. + |. ..|.+++|+|++++|++++.|++|++||+..+.... .
T Consensus 212 s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 212 TCSQ----DGTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp EEET----TCSEEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred EEeC----CCCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence 9986 777 9999999999999998 5 66 899999999999999999999999999997653211 1
Q ss_pred -------------EeCC-CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358 616 -------------IDAG-GGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 616 -------------~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
.... ........++|+++++++++++.||.+++|++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 0001 1112246799999999999999999999998764
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=8.3e-27 Score=265.45 Aligned_cols=328 Identities=11% Similarity=0.117 Sum_probs=254.3
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCceEEE
Q 001358 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 535 (1092)
++++++.|+.|++||+.+++.+..+.+|.. +.+++|++ ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 788999999999999999999999987754 78888854 66665 677799999999999888777776555 89999
Q ss_pred EEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceEE
Q 001358 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLT 614 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~ 614 (1092)
+|+|+++++++++. .++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++.+.
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCC----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 99999999877653 2567999999999998887754 368999999999988 677889999999999999988
Q ss_pred EEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCC
Q 001358 615 TIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 693 (1092)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1092)
.+..+. .+..++|+|+++++ ++++.++.|++||+.+++....+.
T Consensus 153 ~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 197 (391)
T 1l0q_A 153 TVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------------------------------- 197 (391)
T ss_dssp EEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred EEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------------------------------
Confidence 887653 36899999999887 566778999999987542211100
Q ss_pred CCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcc
Q 001358 694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 773 (1092)
Q Consensus 694 ~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~ 773 (1092)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCCceeeEEecCCCCCeEEE
Q 001358 774 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSL 849 (1092)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s----dg~i~iwd~~~~~~~~~~~~~~~~i~~l 849 (1092)
+...+.+++|+|+++++++++ ++.|++||+.+++.+..+..+. .+.++
T Consensus 198 ---------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 249 (391)
T 1l0q_A 198 ---------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGI 249 (391)
T ss_dssp ---------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEE
T ss_pred ---------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEE
Confidence 222355677788887777664 5789999999998888887654 57899
Q ss_pred EEcCCCCCEE-EEEeCCCeEEEEEcCCceeeEeeccccCCeE---EEEEcC------------CC----------CEEEE
Q 001358 850 AFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVT---GLVFSD------------AL----------NILVS 903 (1092)
Q Consensus 850 ~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~---~l~~sp------------dg----------~~l~s 903 (1092)
+|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.| +. ..+..
T Consensus 250 ~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~ 328 (391)
T 1l0q_A 250 AVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTD 328 (391)
T ss_dssp EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEE
T ss_pred EEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEe
Confidence 9999 77766 6778899999999999999988877655432 123332 21 34566
Q ss_pred EeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001358 904 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 904 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
.+.|..+++|++.++.... . .-....|+++|.+.+.
T Consensus 329 ~~~~~~~~~W~~~~g~~~~------~--------~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 329 LSKDATEWKWDFGDGSSSK------K--------QNPTHTYSETGIYTVR 364 (391)
T ss_dssp CCBSCSEEEEECSSSCEEC------S--------SSCEECCSSCEEEEEE
T ss_pred CCCCceEEEEECCCCcccC------c--------CCCeEEeCCCceEEEE
Confidence 6778899999998765211 1 1224679999998875
No 114
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=2.3e-28 Score=279.14 Aligned_cols=285 Identities=13% Similarity=0.144 Sum_probs=232.9
Q ss_pred CcEEEEEECCCCCEEE-EEeCCCEEEEEEccCC-CCccceEEecccccceeEEEeeC-CCCcEEEEEEeCCCcEEEEECC
Q 001358 397 VSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAV 473 (1092)
Q Consensus 397 ~~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~-~~~~~~~~l~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~ 473 (1092)
.....++++|+...++ +++.+|.|+||++... +.......+.+|.+.|.+++|+| +++ +|++|+.||+|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455689999876554 5788999999999654 22233335779999999999999 788 89999999999999999
Q ss_pred CC-------ceeEEEecCCcceEEEeecccCCc-cEEEEEecCCeEEEEEcCCCCceEEe--cCCCCceEEEEEecCCCE
Q 001358 474 TG-------SRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 474 ~~-------~~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~dg~~ 543 (1092)
++ +.+..+.+|...|.+++|++ ++ .+|++++.||.|++||+.+.+....+ ..|...|.+++|+|++++
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence 88 67889999999999999965 44 59999999999999999999888888 788999999999999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEE-eeccccCCceEEEEEcCCCCEEEEE---eCCCeEEEEECCCCce-EEEEeC
Q 001358 544 LFSCGTSKEGESFLVEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQL-LTTIDA 618 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~---s~dg~i~iwd~~~~~~-~~~~~~ 618 (1092)
|++++. ++.|++||+++++.+..+ .+|. ...+.++.|+|++.++++| +.|+.|++||+.+++. +.....
T Consensus 191 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~ 264 (402)
T 2aq5_A 191 ICTSCR----DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL 264 (402)
T ss_dssp EEEEET----TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC
T ss_pred EEEEec----CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec
Confidence 999986 667999999999999888 6666 2348999999999999998 7999999999998765 333332
Q ss_pred CCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCCe-eeeccc--ccccceeeeecCCcccccccccCCceeecCCC
Q 001358 619 GGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNS-VDAAGV--LSDNLRKLSVNPISTVTGAGIANGSVSVNEDP 694 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1092)
. +...+.+++|+|+++++++++ .||.|++|++.+++. +..+.. +...+.+++|+
T Consensus 265 ~-~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s--------------------- 322 (402)
T 2aq5_A 265 D-TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM--------------------- 322 (402)
T ss_dssp C-CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC---------------------
T ss_pred c-CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe---------------------
Confidence 2 234689999999999997554 799999999998874 444444 44778888886
Q ss_pred CCCcccceeeccccccceecee
Q 001358 695 KEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 695 s~d~~~l~s~~~d~~i~~w~~~ 716 (1092)
|++..+++ .++.+++|++.
T Consensus 323 -p~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 323 -PKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp -CGGGSCGG--GTEEEEEEEEE
T ss_pred -ccccccee--cceeEEEEEcC
Confidence 56666664 45689999976
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.3e-29 Score=308.79 Aligned_cols=260 Identities=13% Similarity=0.153 Sum_probs=212.3
Q ss_pred eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
..++.+|++.|++++|+|+|+ ++++|+.||+|+|||+.++..... ..+.+|...|.+++|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~ 63 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAH 63 (753)
T ss_dssp ------CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECC
T ss_pred eeecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecC
Confidence 367899999999999999998 689999999999999985432211 12778999999999999
Q ss_pred C--CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEEEEECCCC--ceeEE
Q 001358 407 D--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTG--SRTYS 480 (1092)
Q Consensus 407 d--g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~--~~~~~ 480 (1092)
+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ ++ .+++|+.||.|++||+.++ .....
T Consensus 64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 64 PKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp TTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeE
Confidence 8 99999999999999999998752 233367789999999999999 88 8999999999999999887 34566
Q ss_pred EecCCcceEEEeecccC-----------CccEEEEEecCCeEEEEEcCCCC----ceEEecCCCCceEEEEEecC---CC
Q 001358 481 FEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSAN---GR 542 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~d---g~ 542 (1092)
+.+|...|.+++|++.. ++.++++|+.||.|++||++... ....+..|...|.+++|+|+ ++
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 78899999999997742 57899999999999999998774 34467788999999999999 89
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001358 543 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
++++++. ++.|++||..++... ........+...|.+++|+|+++++++++.||.|++|++.++.
T Consensus 221 ~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 221 YLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999986 667999999887421 1111112234789999999999999999999999999998643
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.1e-26 Score=266.12 Aligned_cols=355 Identities=14% Similarity=0.093 Sum_probs=261.2
Q ss_pred CCCcEEEEEECCCCCEEEEEeCC-CEEEEEEccCCCCccceEEecccccceeEEE---eeCCCCcEEEEE----------
Q 001358 395 PGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLA---FSAPCKQISVIT---------- 460 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~---~s~d~~~l~l~s---------- 460 (1092)
....|..+.++|....++..... ...+++.. .....+..++ |+|+++.+++++
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEM-------------DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYR 92 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEE-------------ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEE
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeec-------------ccCCccEEEEEeeccCCCcEEEEEEccccCcceee
Confidence 44567778888865444443211 11222221 1233456666 777766422222
Q ss_pred --EeCCC--cEEEEECCCC--ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-----EecCCC
Q 001358 461 --CGDDK--TIKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-----DYDAPG 529 (1092)
Q Consensus 461 --~~~d~--~i~vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~ 529 (1092)
++.++ .|..||..++ +.+..+..+. .+.+++|++ ++.++++++.++.|++||+.+++... .+..+.
T Consensus 93 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 93 IRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp ESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred ecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence 23334 4444555445 5566666554 455788865 66788888899999999999887766 344677
Q ss_pred CceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECC
Q 001358 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN 608 (1092)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~ 608 (1092)
..+.+++|+++++.+++++. ++.|++||..+++.+..+..+. ..+.+++|+|+++.+++++ .++.|++||+.
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~----d~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 242 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQ----ANAVHVFDLKTLAYKATVDLTG---KWSKILLYDPIRDLVYCSNWISEDISVIDRK 242 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGG----GTEEEEEETTTCCEEEEEECSS---SSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceeEEEEcCCCEEEEEECC----CCEEEEEECCCceEEEEEcCCC---CCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence 78999999999999998875 6679999999999998888766 7899999999999886554 89999999999
Q ss_pred CCceEEEEeCCCCCCCCceEEEccCCCEEEEEe--------CCCeEEEEECCCCCeeeecccccccceeeeecCCccccc
Q 001358 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--------NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1092)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1092)
+++.+..+..+. .+.+++|+|+++++++++ .|+.|++||+.+++.....
T Consensus 243 ~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-------------------- 299 (433)
T 3bws_A 243 TKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-------------------- 299 (433)
T ss_dssp TTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--------------------
T ss_pred CCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--------------------
Confidence 999888776543 378999999999999887 3667777776543211100
Q ss_pred ccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEE
Q 001358 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 760 (1092)
Q Consensus 681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~l 760 (1092)
T Consensus 300 -------------------------------------------------------------------------------- 299 (433)
T 3bws_A 300 -------------------------------------------------------------------------------- 299 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-e-CCeEEEEEcCCceeeEE
Q 001358 761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILT 838 (1092)
Q Consensus 761 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~-s-dg~i~iwd~~~~~~~~~ 838 (1092)
.+...+.+++|+|+++.++++ + ++.|++||+.+++.+..
T Consensus 300 ---------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 300 ---------------------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp ---------------------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ---------------------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 012245567888888755444 3 68899999998888877
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeC---------------CCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEE
Q 001358 839 IMPPSPTATSLAFNPHDNNVIAIGMD---------------DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS 903 (1092)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~~---------------dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s 903 (1092)
+. +...+.+++|+| ++++|++++. ||.|++||+.+++.+..+.. ...+.+++|+|||++|++
T Consensus 341 ~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 341 IP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp EE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEE
T ss_pred ec-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEE
Confidence 76 667899999999 8888888876 57999999999999888886 457999999999999998
Q ss_pred EeC-CCcEEEEEcCC
Q 001358 904 SGG-DAQIFVWDVDG 917 (1092)
Q Consensus 904 ~s~-Dg~i~iwd~~~ 917 (1092)
++. |+.|++|+++.
T Consensus 418 ~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 418 SDFLDHQIRVYRRDG 432 (433)
T ss_dssp EETTTTEEEEEEETT
T ss_pred EECCCCeEEEEEecC
Confidence 875 99999999874
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.7e-27 Score=248.86 Aligned_cols=270 Identities=10% Similarity=0.053 Sum_probs=200.4
Q ss_pred EEEEEeCCCeEEEEECCCC---CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccce
Q 001358 636 LLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 636 ~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~ 712 (1092)
.++++++ ..|++|+..++ +.+.+...+..+|..+.+.|+...+ +.... |
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------------------~~~~~-~---- 107 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL----------------------VCVAL-G---- 107 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC----------------------EEEEE-C----
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce----------------------eeeee-c----
Confidence 4555555 69999999998 7888999999999999887643322 11110 0
Q ss_pred eceeeccCccceecccCCccccccEEEEEEecC----CcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCC
Q 001358 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNG----GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 788 (1092)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~----g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1092)
.-+...|.+++++|+ ++.++.++.+ +.+|++
T Consensus 108 ------------------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l------------------------- 142 (356)
T 2w18_A 108 ------------------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL------------------------- 142 (356)
T ss_dssp ------------------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEE-------------------------
T ss_pred ------------------cccccceEEEEECCCccccccEEEeCCCe--EEEEec-------------------------
Confidence 115678999999999 9988887744 555542
Q ss_pred CceeeecCCCCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEEc-CCceeeEEecCCCCCeEEEEEcC--CCCCEEEEE
Q 001358 789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIV-MTFKTILTIMPPSPTATSLAFNP--HDNNVIAIG 862 (1092)
Q Consensus 789 ~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~s~--~d~~~lasg 862 (1092)
++|+++.++. |+.|++|++ .+++.+..+..|...++.++|++ .++.+||+|
T Consensus 143 -----------------------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg 199 (356)
T 2w18_A 143 -----------------------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT 199 (356)
T ss_dssp -----------------------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred -----------------------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence 3556666654 788999998 45778788888888888888887 467899999
Q ss_pred eCCCeEEEEEcCCceeeEeecccc---CCeEEEEEcCCCCEE------------EEEeCCCcEEEEEcCCCceeeeeeee
Q 001358 863 MDDSTILIYNARSSEVISKLEGHS---KRVTGLVFSDALNIL------------VSSGGDAQIFVWDVDGWGIQTCRSLQ 927 (1092)
Q Consensus 863 ~~dg~v~iwd~~~~~~~~~l~~h~---~~V~~l~~spdg~~l------------~s~s~Dg~i~iwd~~~~~~~~~~~~~ 927 (1092)
+.|++|+|||+.+|+++.++.+|. ..+.+++|+|||+++ ++|+.|++|++||..+++......+.
T Consensus 200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~ 279 (356)
T 2w18_A 200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC 279 (356)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee
Confidence 999999999999999999998754 467788999999886 66889999999999987754433333
Q ss_pred cCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEE-EEEEecCCCEEEEEeCCCcEEEE
Q 001358 928 TPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPIS-QATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 928 ~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~-~l~fs~dg~~l~t~s~Dg~i~vw 1005 (1092)
.+.++.. .+ +..+.++.++|+ +.|++|+|||+.+++++.. +.+|...+. +++|||||++|++|+.|++|+||
T Consensus 280 ~p~Gh~~---~~--lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~t-L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 280 LPPGQAG---RF--LEGDVKDHCAAAILTSGTIAIWDLLLGQCTAL-LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp CCTTCCC---CE--EEEEEETTEEEEEETTSCEEEEETTTCSEEEE-ECCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred ccCCCcc---ee--EccccCCCEEEEEcCCCcEEEEECCCCcEEEE-ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 3445443 23 333444888888 4799999999999999988 557766554 68999999999999999999999
Q ss_pred EC
Q 001358 1006 EA 1007 (1092)
Q Consensus 1006 d~ 1007 (1092)
|+
T Consensus 354 d~ 355 (356)
T 2w18_A 354 HY 355 (356)
T ss_dssp EE
T ss_pred cC
Confidence 96
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=8.9e-28 Score=276.37 Aligned_cols=256 Identities=16% Similarity=0.250 Sum_probs=214.4
Q ss_pred eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCC----------CCceeeeeeeeeecccccceeEEeeecCCC
Q 001358 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS----------GQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~----------~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~ 396 (1092)
...+.+|.+.|++++|+|++..++|+|+.||.|+|||+.+ ...+. .+.+|.
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~-------------------~~~~h~ 181 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDL-------------------RLRGHQ 181 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSE-------------------EEECCS
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcE-------------------EecCCC
Confidence 3556789999999999998545899999999999999986 22222 267899
Q ss_pred CcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCCc----cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 397 ~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~----~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
..|.+++|+|+++ +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. ++++++.|+.|++||
T Consensus 182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d 260 (430)
T 2xyi_A 182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWD 260 (430)
T ss_dssp SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEE
T ss_pred CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEE
Confidence 9999999999998 9999999999999999885432 123457789999999999995444 899999999999999
Q ss_pred CCCC---ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEecCCC-EEEE
Q 001358 472 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGR-RLFS 546 (1092)
Q Consensus 472 ~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~-~l~~ 546 (1092)
+.++ +.+..+..|...|++++|++.. ..++++|+.||.|++||++. ......+..|...|.+++|+|+++ .+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 261 TRNNNTSKPSHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp TTCSCSSSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred CCCCCCCcceeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence 9987 5778888999999999997642 24799999999999999998 456778888999999999999996 5777
Q ss_pred EecCCCCceeEEEEeCCC--------------CeEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 001358 547 CGTSKEGESFLVEWNESE--------------GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~ 610 (1092)
++. ++.|++||+.. .+.+..+.+|. ..|.+++|+|+++ .+++++.||.|++|++...
T Consensus 340 ~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 340 SGT----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EET----TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EeC----CCcEEEEeCCCCccccCccccccCCcceEEEcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 765 56799999987 35556666666 8899999999999 8899999999999998754
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=9.8e-27 Score=268.91 Aligned_cols=300 Identities=12% Similarity=0.040 Sum_probs=229.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceE--EecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC
Q 001358 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
..+.+++|+|+++++++++.++.|++||+.+++...... .+.+|.+.|.+++|+++++ ++++++.|+.|++||+++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence 456699999988888888888999999999987553211 2457888999999999998 899999999999999999
Q ss_pred CceeEEEecCCcceEEEeecccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCC-
Q 001358 475 GSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE- 552 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~- 552 (1092)
++.+..+..|...+.+++|++ ++..+ ++++.|+.|++||+++++....+.. ...+.+++|+|+|+++++++....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred ceEEEEEcCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence 999999999999999999965 55666 5555899999999998777666655 346899999999999998874321
Q ss_pred ---CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceE
Q 001358 553 ---GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1092)
Q Consensus 553 ---~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1092)
.++.|++||+.+++.+..+. +. ..+..++|+|+++.+ ++++.++.|++||+.+++.+..+... ..+.++
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~-~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~ 350 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIG-PP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---DKPNTI 350 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEE-EE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEE
T ss_pred cccCCCeEEEEECCCCcEEeecc-CC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---CCCCeE
Confidence 36789999999998877663 33 478899999999866 45689999999999999988888643 347899
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccc
Q 001358 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1092)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 708 (1092)
+|+|+++++++++.+.. ..+..++++++.||
T Consensus 351 ~~s~dg~~l~~~~~~~~-------------------------------------------------~~~~~~~~~g~~dg 381 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPN-------------------------------------------------HPTEGYLKKGLVLG 381 (433)
T ss_dssp EECTTSSEEEEEECCCC-------------------------------------------------CTTTCTTSCCSSCC
T ss_pred EEcCCCCEEEEEecCCC-------------------------------------------------ccccccccccccce
Confidence 99999999988876320 01123344445555
Q ss_pred ccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeec-CCeeEEeeec
Q 001358 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWP 764 (1092)
Q Consensus 709 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~lw~~~ 764 (1092)
.+++||....+..... .....+.+++|+|+|+.+++++. ++.+++|++.
T Consensus 382 ~v~~~d~~~~~~~~~~-------~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 382 KVYVIDTTTDTVKEFW-------EAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEETTTTEEEEEE-------ECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEEECCCCcEEEEe-------cCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 5555554322111110 02345788999999998888775 8999999864
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-28 Score=303.76 Aligned_cols=255 Identities=17% Similarity=0.300 Sum_probs=215.2
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEE
Q 001358 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~ 468 (1092)
++.+|.+.|++++|+|+|++|++|+.||.|+|||+.++. ......+.+|.++|++++|+|+ ++ ++++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 377899999999999999999999999999999998532 2334478899999999999998 77 899999999999
Q ss_pred EEECCCCc--eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEec-----
Q 001358 469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA----- 539 (1092)
Q Consensus 469 vwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~----- 539 (1092)
+||+.+++ .+..+.+|...|.+++|++..++.++++|+.||.|++||+.... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 77888899999999999776447899999999999999998873 3456677888999999999
Q ss_pred --------CCCEEEEEecCCCCceeEEEEeCCCC----eEEEEEeeccccCCceEEEEEcCC---CCEEEEEeCCCeEEE
Q 001358 540 --------NGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKI 604 (1092)
Q Consensus 540 --------dg~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~i 604 (1092)
++..+++++. ++.|++||..++ .....+.+|. ..|.+++|+|+ ++++++++.||.|++
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence 5899999986 566999999877 5556677776 89999999999 899999999999999
Q ss_pred EECCCCceE---EEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 001358 605 WDMNKVQLL---TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 605 wd~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
||+.++... .......+...|.+++|+|+|+++++++.||.|++|++..+.
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 999886421 112222344578999999999999999999999999998653
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=3.3e-27 Score=263.63 Aligned_cols=299 Identities=13% Similarity=0.135 Sum_probs=215.8
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
..+|...|.+++|||||++||+|+.++ ++|||+.+++... . .+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 467999999999999999999998776 7899998764332 1 22235888999998884 346778889999999
Q ss_pred CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
..+++.+..+. |...|.++++++ + .++++ .|+.|++||+.+. +....+.. +...+++++ .++++++.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg- 155 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE- 155 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence 99999999887 677999999854 3 34443 5889999999887 44444433 445567777 66666522
Q ss_pred CCCceeEEEEeCCCCe----------------EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceE
Q 001358 551 KEGESFLVEWNESEGA----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLL 613 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~ 613 (1092)
..++.|++||+.++. .+..+.+|. ..|.+++|+|++++|++|+.|++ |++||+.+++.+
T Consensus 156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV 231 (355)
T ss_dssp -SCTTCEEEEECCC------------------CCEEECCCS---SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccC---CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 236679999999876 267778877 89999999999999999999998 999999999999
Q ss_pred EEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeee--eccc-----ccccceeeeecCCcccccccccCC
Q 001358 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAGV-----LSDNLRKLSVNPISTVTGAGIANG 686 (1092)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~ 686 (1092)
..+....+...|.+++|+|++++|++++.|++|++|++....... .+.. .....+.++...... .......
T Consensus 232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 309 (355)
T 3vu4_A 232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV--DKHVRGC 309 (355)
T ss_dssp EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCC--CTTCCCC
T ss_pred EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEecc--CCCCCce
Confidence 999732234579999999999999999999999999998653211 1111 001111110000000 0001113
Q ss_pred ceeecCCCCCCcccceeeccccccceeceeecc
Q 001358 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1092)
Q Consensus 687 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~ 719 (1092)
.+++ ++|++.+++++.||.+++|++....
T Consensus 310 ~~a~----~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 310 KIAW----ISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEEE----SSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEEE----eCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 4455 7899999999999999999987543
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.7e-27 Score=263.55 Aligned_cols=278 Identities=8% Similarity=0.048 Sum_probs=218.3
Q ss_pred EeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001358 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527 (1092)
Q Consensus 448 ~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 527 (1092)
.+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+...
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 4456777 89999999999999999999988886 466777777653 99999999999998653
Q ss_pred CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe-eccccCCceEEEEEcC--CCCEEEEEeCCCeEEE
Q 001358 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKI 604 (1092)
Q Consensus 528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~i 604 (1092)
.+.+||..+++.+..+. +|. ..|.+++|+| +++++++++.||+|++
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSA---NEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCS---SCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCC---CCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 27788888888776665 443 7899999999 9999999999999999
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCee-eecccccccceeeeecCCcccccccc
Q 001358 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV-DAAGVLSDNLRKLSVNPISTVTGAGI 683 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~ 683 (1092)
||+++++.......+. ...+.+++|+|++.++++|+.||.|++||+.+++.. ..+.
T Consensus 154 wd~~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~---------------------- 210 (343)
T 3lrv_A 154 QSYEDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP---------------------- 210 (343)
T ss_dssp EESSSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC----------------------
T ss_pred EECCCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe----------------------
Confidence 9999999876664433 235899999999999999999999999998765221 1000
Q ss_pred cCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeee
Q 001358 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1092)
Q Consensus 684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~ 763 (1092)
T Consensus 211 -------------------------------------------------------------------------------- 210 (343)
T 3lrv_A 211 -------------------------------------------------------------------------------- 210 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecC--
Q 001358 764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP-- 841 (1092)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~-- 841 (1092)
. +|...|.+++|+|+|.+|++++++.|++||+.+++.+..+..
T Consensus 211 --------------------------------~---~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~ 255 (343)
T 3lrv_A 211 --------------------------------V---DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYT 255 (343)
T ss_dssp --------------------------------C---CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCB
T ss_pred --------------------------------c---cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccc
Confidence 0 166778888888888888888877899999888776655443
Q ss_pred -CCCCe--EEEEEcCCCCCEEEEEeC-CCeEEEEEcCCceeeEeeccccCCeEEEEEcC---CCCEEEEEeCCCcEEEEE
Q 001358 842 -PSPTA--TSLAFNPHDNNVIAIGMD-DSTILIYNARSSEVISKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 842 -~~~~i--~~l~~s~~d~~~lasg~~-dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp---dg~~l~s~s~Dg~i~iwd 914 (1092)
|...+ .+++|+| ++++|++++. |+.|+||++.+....... .++..++|++ +.+.+++++.|+.+.++-
T Consensus 256 ~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 256 IPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp C-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred cccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 33333 4699999 8999999998 999999999766543332 5678889998 889999999999999886
Q ss_pred cCC
Q 001358 915 VDG 917 (1092)
Q Consensus 915 ~~~ 917 (1092)
...
T Consensus 331 ~~~ 333 (343)
T 3lrv_A 331 KTN 333 (343)
T ss_dssp ECS
T ss_pred ecC
Confidence 554
No 123
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.4e-27 Score=271.25 Aligned_cols=265 Identities=15% Similarity=0.096 Sum_probs=219.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEec--------------------------------------
Q 001358 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-------------------------------------- 438 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-------------------------------------- 438 (1092)
.++.+++|+|||++|+++ .++.|++||+.+|+.......+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478899999999977666 56789999999987211111222
Q ss_pred ----------------ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC--CCceeEEEe--cCCcceEEEeecccCC
Q 001358 439 ----------------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFE--GHGAPVYSLCPHAKEN 498 (1092)
Q Consensus 439 ----------------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~--~~~~~~~~~--~~~~~v~~i~~~~~~~ 498 (1092)
+|.+.|.+++|+|+++. ++++++.|+.|++||+. +++.+..+. .|...|.+++|++ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~ 160 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESR-LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--D 160 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSE-EEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--T
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCE-EEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--C
Confidence 34457999999999993 24899999999999999 888888886 5678899999954 6
Q ss_pred ccEEEEEecCCeEEEEEcCCCCceE----EecCCCCceEEEEEecC---CCEEEEEecCCCCceeEEEEeCCCCeEEEE-
Q 001358 499 IHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAIKRT- 570 (1092)
Q Consensus 499 ~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~d---g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~- 570 (1092)
+.+|++++.+|.+++|++....... .+..|...|.+++|+|+ +++|++++. ++.|++||+.+++.+..
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDKW 236 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEEE
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeeee
Confidence 7899999999999999998776543 66678889999999999 999999986 56799999999988877
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----------------------CCCCCCce
Q 001358 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------GGLPENPR 627 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~ 627 (1092)
+.+|. ..|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....+..
T Consensus 237 ~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 237 LFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp CCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred ecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 44666 899999999 9999999999999999999999998888632 11235789
Q ss_pred EEEccCCCEEEEEe-CCCeEEEEEC--CCC---CeeeecccccccceeeeecC
Q 001358 628 ICFNKNGTLLAVIA-NENRIKILET--PES---NSVDAAGVLSDNLRKLSVNP 674 (1092)
Q Consensus 628 v~~s~~~~~l~~~~-~dg~i~iw~~--~~~---~~~~~~~~~~~~v~~~~~~~ 674 (1092)
++|+|+++++++++ .++.|++|++ ..+ ..+..+..+ ..+.+++++|
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC
Confidence 99999999999999 8999999999 555 556666666 7788888885
No 124
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=9.8e-27 Score=267.64 Aligned_cols=256 Identities=16% Similarity=0.311 Sum_probs=214.2
Q ss_pred EEeeecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCC-------CCccceEEecccccceeEEEeeCCCCcEEEE
Q 001358 388 KTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG-------SDARQQLEIDAHVGNVNDLAFSAPCKQISVI 459 (1092)
Q Consensus 388 ~~~~l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~-------~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~ 459 (1092)
......+|.+.|++++|+|+ +.+||+++.+|.|++||+.+. ........+.+|...|.+++|+|++.. +|+
T Consensus 120 ~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~ 198 (430)
T 2xyi_A 120 EIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLL 198 (430)
T ss_dssp EEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEE
T ss_pred EEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEE
Confidence 33446679999999999997 789999999999999999862 112334477899999999999999886 699
Q ss_pred EEeCCCcEEEEECCCCce-------eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCC
Q 001358 460 TCGDDKTIKVWDAVTGSR-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPG 529 (1092)
Q Consensus 460 s~~~d~~i~vwd~~~~~~-------~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~ 529 (1092)
+|+.||.|++||+.++.. ...+.+|...|.+++|++. ++.+|++++.||.|++||++.. .....+..+.
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 999999999999988432 4667789999999999764 4579999999999999999987 4566777888
Q ss_pred CceEEEEEecCCC-EEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCeEEEEE
Q 001358 530 LGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWD 606 (1092)
Q Consensus 530 ~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd 606 (1092)
..|.+++|+|++. .+++++. ++.|++||+++ +..+..+.+|. ..|.+++|+|+++ .+++++.||.|++||
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iwd 350 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVWD 350 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred CCeEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence 9999999999998 4667765 67799999997 56778888877 8999999999985 588899999999999
Q ss_pred CCC--------------CceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCCC
Q 001358 607 MNK--------------VQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 654 (1092)
Q Consensus 607 ~~~--------------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~ 654 (1092)
+.. ...+.....+ ...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 351 LSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 987 2455555444 45699999999999 9999999999999998753
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7e-28 Score=268.33 Aligned_cols=271 Identities=10% Similarity=0.055 Sum_probs=213.2
Q ss_pred EeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001358 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1092)
Q Consensus 340 v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1092)
..+.+|++ ++++|+.||+|++||+.+++.+.... ...|.+++|+|+ +++++.|++
T Consensus 42 ~~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~---------------------~~~v~~~~~~~~---~~s~s~D~~ 96 (343)
T 3lrv_A 42 KSMYYDKW-VCMCRCEDGALHFTQLKDSKTITTIT---------------------TPNPRTGGEHPA---IISRGPCNR 96 (343)
T ss_dssp SSSSEEEE-EEEEEEETTEEEEEEESSSSCEEEEE---------------------EECCCTTCCCCS---EEEECSTTE
T ss_pred hhhcCCCC-EEEEECCCCcEEEEECCCCcEEEEEe---------------------cCCceeeeeCCc---eEEecCCCe
Confidence 34557776 79999999999999999998776421 356778889998 999999999
Q ss_pred EEEEEcc---------CCCCccceEEecccccceeEEEeeC--CCCcEEEEEEeCCCcEEEEECCCCceeEEEe-cCCcc
Q 001358 420 VQLYAYH---------GGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAP 487 (1092)
Q Consensus 420 i~iwd~~---------~~~~~~~~~~l~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~ 487 (1092)
|++|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++++.|++|++||+++++.+.... .|...
T Consensus 97 i~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~ 172 (343)
T 3lrv_A 97 LLLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE 172 (343)
T ss_dssp EEEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred EEEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence 9999766 3332221 1226778999999999 999 89999999999999999999877664 45568
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCce-EEecC-CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
|.+++|++ ++.+|++|+.||.|++||+++.... ..+.. |..+|.+++|+|+|.+|++++. + .|++||++++
T Consensus 173 i~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~----~-~v~iwd~~~~ 245 (343)
T 3lrv_A 173 YSSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD----Q-TVVCFDLRKD 245 (343)
T ss_dssp CCEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES----S-BEEEEETTSS
T ss_pred eEEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC----C-eEEEEEcCCC
Confidence 99999955 7789999999999999999998887 67777 8899999999999999999983 2 6999999998
Q ss_pred eEEEEEeeccccCCce--EEEEEcCCCCEEEEEeC-CCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc---CCCEEEE
Q 001358 566 AIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLLAV 639 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~ 639 (1092)
+.+..+..+..+...+ .+++|+|+++++++++. |+.+++|++.+....... ..+..++|++ +...+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence 8766655422112333 46999999999999998 999999999765433332 1255677887 8889999
Q ss_pred EeCCCeEEEEECC
Q 001358 640 IANENRIKILETP 652 (1092)
Q Consensus 640 ~~~dg~i~iw~~~ 652 (1092)
++.||.+.++-..
T Consensus 320 ~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 320 VCGDGGIAAILKT 332 (343)
T ss_dssp EEETTEEEEEEEC
T ss_pred EecCCceEEEEec
Confidence 9999999887543
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.1e-26 Score=242.13 Aligned_cols=285 Identities=14% Similarity=0.073 Sum_probs=197.1
Q ss_pred ceEEeec-CCCceEEEEEcCcCcEEEEecCCC---CceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358 337 PMSMDFH-PVQHTLLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 337 V~~v~~s-pdg~~llasg~~d~~i~iwd~~~~---~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
+.++-|- +..+.+.+..-...+|++|+..++ +.+++ +.+|+.+|..++|+||-.-|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYT-------------------WHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEE-------------------EECCSSCEEEECCCTTCCSCE
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEE-------------------EeccCceeEEEEEcCccccee
Confidence 4455553 344433333333489999999998 55554 556777888888888654333
Q ss_pred EEe--CCCEEEEEEccCC---CCccceEEecccccceeEEEeeCCCCcEEEEEEe--CCCcEEEEEC-CCCceeEEEecC
Q 001358 413 VAY--SKHIVQLYAYHGG---SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDA-VTGSRTYSFEGH 484 (1092)
Q Consensus 413 s~~--~d~~i~iwd~~~~---~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~-~~~~~~~~~~~~ 484 (1092)
+.. .=..-.++-+.-. +...+...-.+|...|..+ ++++ ++.+++ .|+.|++|++ .+|+.+..+.+|
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 321 1111112222111 1111111223444445443 4555 444433 5999999999 558888899999
Q ss_pred CcceEEEeecc-cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC---ceEEEEEecCCCEEEEEec--------CCC
Q 001358 485 GAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSANGRRLFSCGT--------SKE 552 (1092)
Q Consensus 485 ~~~v~~i~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~i~~~~~s~dg~~l~~~~~--------~~~ 552 (1092)
...++.++|++ .+++.+|++++.|++|++||+.+++...++..+.. .+.+++|+|+|+++++++. ++.
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 99999999988 66789999999999999999999999888876443 5778899999999876542 234
Q ss_pred CceeEEEEeCCCCeEEEEEe-----eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358 553 GESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
.+.+|++||..+++.+..+. +|. ..+.+..+ ++..+++++.|++|+|||+.+++++.++..|.. ..+..
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~---~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~-~vvs~ 331 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQA---GRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSD-QHWSF 331 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCC---CCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC---CCCCE
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCc---ceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCC-CeEEE
Confidence 58899999999999887663 333 34443344 378899999999999999999999999986543 22446
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEC
Q 001358 628 ICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
++|+|||++|++|+.|++|+|||.
T Consensus 332 vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 332 VKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEecC
Confidence 899999999999999999999985
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=9.7e-26 Score=264.60 Aligned_cols=345 Identities=11% Similarity=0.091 Sum_probs=247.0
Q ss_pred eecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeec-CCCCcEEEEEECCCCCEEEEEeCCCE
Q 001358 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1092)
Q Consensus 341 ~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~-~h~~~V~~l~~spdg~~las~~~d~~ 419 (1092)
+|+|++. ++++++.|++|.+||..+++.+.. +. ++. +..++|||||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 4899996 789999999999999999988765 33 333 889999999999999999999
Q ss_pred EEEEEc--cCCCCccceEEecccccceeEEEeeC----CCCcEEEEEEe-CCCcEEEEECCCCceeEEEecCCcceEEEe
Q 001358 420 VQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSA----PCKQISVITCG-DDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1092)
Q Consensus 420 i~iwd~--~~~~~~~~~~~l~~h~~~v~~~~~s~----d~~~l~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~ 492 (1092)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+||..+++++..+..+...+....
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7765444 454 344679999999 999 566665 589999999999999888764322111111
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE--E
Q 001358 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR--T 570 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~--~ 570 (1092)
++ +...+..+.++|++..+++... .++.|.+||..+++.+. .
T Consensus 276 ~~---------------------------------~~~~v~~i~~s~~~~~~~vs~~---~~g~i~vvd~~~~~~l~~~~ 319 (543)
T 1nir_A 276 YH---------------------------------PEPRVAAIIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTS 319 (543)
T ss_dssp EE---------------------------------SCCCEEEEEECSSSSEEEEEET---TTTEEEEEECTTSSSCEEEE
T ss_pred cc---------------------------------cCCceEEEEECCCCCEEEEEEC---CCCeEEEEEecCCCcceeEE
Confidence 11 1125667888888777666542 36678889887765443 2
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEE-EccC-CCEEEEEe-CCCeE
Q 001358 571 YQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKN-GTLLAVIA-NENRI 646 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~-~~~l~~~~-~dg~i 646 (1092)
+. +. ..+..+.|+|+++++++++ .+++|.+||..+++++..+........-..+. ++|+ +..++++. .|++|
T Consensus 320 i~-~~---~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V 395 (543)
T 1nir_A 320 IG-AA---PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI 395 (543)
T ss_dssp EE-CC---SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEE
T ss_pred ec-cC---cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceE
Confidence 22 22 5677899999999887655 68999999999999998887532111112223 4676 55566654 57899
Q ss_pred EEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceec
Q 001358 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1092)
Q Consensus 647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 726 (1092)
.+|+..+.. |..
T Consensus 396 ~v~d~~~~~-------~~~------------------------------------------------------------- 407 (543)
T 1nir_A 396 SLIGTDPKN-------HPQ------------------------------------------------------------- 407 (543)
T ss_dssp EEEECCTTT-------CTT-------------------------------------------------------------
T ss_pred EEEEeCCCC-------Cch-------------------------------------------------------------
Confidence 999987520 000
Q ss_pred ccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001358 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1092)
Q Consensus 727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~ 806 (1092)
+...+ +.... .+...+.
T Consensus 408 ------~~~~~-----------------------------------------------------v~~l~----~~g~~~~ 424 (543)
T 1nir_A 408 ------YAWKK-----------------------------------------------------VAELQ----GQGGGSL 424 (543)
T ss_dssp ------TBTSE-----------------------------------------------------EEEEE----CSCSCCC
T ss_pred ------hcCeE-----------------------------------------------------EEEEE----cCCCCce
Confidence 00000 00000 1344556
Q ss_pred EEEEecCCCEEEEEe--------CCeEEEEEcCCceee-EEe--------cCCCCCeEEEEEcCCCCCEEEEEe-----C
Q 001358 807 CFALSKNDAYLFSAS--------GGVISLYIVMTFKTI-LTI--------MPPSPTATSLAFNPHDNNVIAIGM-----D 864 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s--------dg~i~iwd~~~~~~~-~~~--------~~~~~~i~~l~~s~~d~~~lasg~-----~ 864 (1092)
.++++|||++|++++ +++|.+||+.+++.. ..+ ..+...+..++|+| +|+.|+++. .
T Consensus 425 ~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~ 503 (543)
T 1nir_A 425 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKND 503 (543)
T ss_dssp CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTS
T ss_pred EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCC
Confidence 788889999888876 468999999998876 443 35677899999999 888888663 4
Q ss_pred CCeEEEEEcCCceeeEeeccc
Q 001358 865 DSTILIYNARSSEVISKLEGH 885 (1092)
Q Consensus 865 dg~v~iwd~~~~~~~~~l~~h 885 (1092)
|+.|.|||..+++++.+++.+
T Consensus 504 ~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 504 SSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp CCEEEEEETTTTEEEEEECCT
T ss_pred CCeEEEEECCCceEEEeecCC
Confidence 799999999999999998854
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=4.6e-26 Score=267.34 Aligned_cols=343 Identities=9% Similarity=0.086 Sum_probs=257.1
Q ss_pred EEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCceE
Q 001358 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLL 613 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~--~~~~~~ 613 (1092)
+++|++..+++++. ++.|.+||..+++++.++.... .+..++|+|+++++++++.|++|++||+ .+++.+
T Consensus 144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence 37888877777654 6779999999999999988544 3889999999999999999999999999 888888
Q ss_pred EEEeCCCCCCCCceEEEcc----CCCEEEEEeC-CCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCce
Q 001358 614 TTIDAGGGLPENPRICFNK----NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1092)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 688 (1092)
..+... ..+..++|+| +|+++++++. +++|.+||..+.+.+..+..+...+....+.
T Consensus 216 ~~i~~g---~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~--------------- 277 (543)
T 1nir_A 216 AEIKIG---IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH--------------- 277 (543)
T ss_dssp EEEECC---SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE---------------
T ss_pred EEEecC---CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc---------------
Confidence 888743 2468999999 9999999885 8999999999887766554211110000000
Q ss_pred eecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEE-EeecCCeeEEeeecCCc
Q 001358 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-ALASNGVHLMWRWPRND 767 (1092)
Q Consensus 689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-~~~~dg~i~lw~~~~~~ 767 (1092)
....+.++.+++++..++ +...++.|.+|++....
T Consensus 278 --------------------------------------------~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 278 --------------------------------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp --------------------------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred --------------------------------------------cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence 123678899999776654 44557899998875431
Q ss_pred cccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC----
Q 001358 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP---- 841 (1092)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~---- 841 (1092)
. +....+ .+...+..++|+|+|+++++++ +++|.+||..+++++..+..
T Consensus 314 ~----------------------l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p 368 (543)
T 1nir_A 314 N----------------------LTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 368 (543)
T ss_dssp S----------------------CEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred c----------------------ceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence 1 110011 1345567899999999887765 68999999999999888764
Q ss_pred CCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCC-------ceeeEeeccccCCeEEEEEcCCCCEEEEEe-------C
Q 001358 842 PSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSG-------G 906 (1092)
Q Consensus 842 ~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s-------~ 906 (1092)
|.+....+ ++|+++.+++++. .|++|.+||+.+ +++++++.+|.+.+..++|+|||++|++++ .
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 447 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence 55444443 5774477778776 689999999998 899999999999999999999999999987 2
Q ss_pred CCcEEEEEcCCCcee-eeeeeecCCCCcCCCCCceEEEEecCCCEEEEE------eCCcEEEEEcCCceeeeeec
Q 001358 907 DAQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF 974 (1092)
Q Consensus 907 Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~------~d~~v~lwd~~~~~~~~~~~ 974 (1092)
+++|.|||+.+++.. ....+....+.......+..++|+|||+.|.++ .++.|.|||..+++++..+.
T Consensus 448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 779999999998754 211111100001112368999999999999874 26899999999999987744
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=3.5e-27 Score=267.49 Aligned_cols=295 Identities=12% Similarity=0.089 Sum_probs=194.5
Q ss_pred cCCCceEEEEEcCcCcEEEEecCCCCce-----eeeeeeeeecccccce-----eEEeeecCCCCcEEEEEECCCCCEEE
Q 001358 343 HPVQHTLLLVGTNVGDTGLWDVNSGQKL-----FIRNFKVWDIGACSML-----FKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 343 spdg~~llasg~~d~~i~iwd~~~~~~~-----~~~~~~~~d~~~~~~~-----~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
+|++..+++.| .++.|.+|+....... ....+..|+....... ........|...+....+++++.+||
T Consensus 27 ~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 105 (393)
T 4gq1_A 27 SPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLA 105 (393)
T ss_dssp SGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEE
T ss_pred CCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEE
Confidence 56665566666 4688999986432211 1111222221111000 00112334555566666777888999
Q ss_pred EEeCCCEEEEEEccCCCCcc--ceEEecccccceeEEEeeC--------CCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001358 413 VAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSA--------PCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~--~~~~l~~h~~~v~~~~~s~--------d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
+++.|++|+|||+.+++... ....+.+|.+.|++++|+| |++ +|+||+.|++|+|||+.++.++..+.
T Consensus 106 s~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd~~~~~~~~~~~ 183 (393)
T 4gq1_A 106 CVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWRLTDEGPILAGY 183 (393)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred EEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEECCCCceeeeec
Confidence 99999999999999876432 2224679999999999998 777 89999999999999999999888888
Q ss_pred cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------------------------cCCCCceEEEEE
Q 001358 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------------------------DAPGLGCTRMAY 537 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------------------------~~~~~~i~~~~~ 537 (1092)
+|..+|.+++|+|. +..+|++++.||+|++||+.+....... ..+...+.++.|
T Consensus 184 ~~~~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~ 262 (393)
T 4gq1_A 184 PLSSPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRW 262 (393)
T ss_dssp ECSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEE
T ss_pred CCCCCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeee
Confidence 99999999999764 2358999999999999999876543321 234556778888
Q ss_pred e-cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEE------------------EEcC--CCCEEEEE
Q 001358 538 S-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV------------------HFDT--AKDQILAA 596 (1092)
Q Consensus 538 s-~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~------------------~~~~--~~~~l~~~ 596 (1092)
+ +|++.+++++. ++.+++||+.++.....+..+. ..+..+ .++| ++.++++|
T Consensus 263 ~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg 335 (393)
T 4gq1_A 263 IGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDST---MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH 335 (393)
T ss_dssp ETTTTCEEEEECT----TSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE
T ss_pred ecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeec---CccccEEEccccccccccCcceeEEEccCCCCEEEEEE
Confidence 6 79999999876 6679999999887766665544 222222 2333 23355668
Q ss_pred eCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358 597 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 597 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
+.||+|++||+.+++....+..+. ..|.+++|+|||++||+++.+| +.+|.+
T Consensus 336 s~Dg~V~lwd~~~~~~~~~~~~~~--~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 336 SQHGLIQLINTYEKDSNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TTTTEEEEEETTCTTCCEEEEECS--SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 899999999999998877766553 3699999999999999998765 555554
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=6.6e-27 Score=265.22 Aligned_cols=252 Identities=6% Similarity=-0.057 Sum_probs=177.8
Q ss_pred EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp- 406 (1092)
.....|...+....+++++. ++|+|+.|++|+|||+.+++...... ...+.+|.+.|.+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~--------------~~~~~gH~~~v~~v~~~p~ 147 (393)
T 4gq1_A 83 YSENLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHV--------------LGGKSGHHNFVNDIDIADV 147 (393)
T ss_dssp EECC----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEE--------------ECTTTSCSSCEEEEEEEEE
T ss_pred ccccccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeee--------------ecccCCCCCceEEEEEccc
Confidence 34456666666777777776 79999999999999999887654211 123789999999999998
Q ss_pred -------CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358 407 -------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 407 -------dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
||++||+|+.|++|+|||+.++..+. .+.+|..+|.+++|+|++.. +|++++.|++|++||+.+++...
T Consensus 148 ~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~ 223 (393)
T 4gq1_A 148 YSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAE 223 (393)
T ss_dssp ECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC---
T ss_pred cccccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccc
Confidence 89999999999999999998875443 56678999999999999864 79999999999999999886543
Q ss_pred EE-------------------------ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE
Q 001358 480 SF-------------------------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 534 (1092)
Q Consensus 480 ~~-------------------------~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 534 (1092)
.. .+|...+.++.|. .+++..+++++.|+++++||+........+..+...+..
T Consensus 224 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~ 302 (393)
T 4gq1_A 224 ENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGP 302 (393)
T ss_dssp -------CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC------------------
T ss_pred cccccCCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCcccc
Confidence 22 3577778888875 357889999999999999999876655544444333333
Q ss_pred EE------------------Eec-CCC-EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEE
Q 001358 535 MA------------------YSA-NGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1092)
Q Consensus 535 ~~------------------~s~-dg~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 594 (1092)
+. ++| .+. ++++++. ++.|++||..+++....+.+|. .+|.+++|+|+|++|+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~----Dg~V~lwd~~~~~~~~~~~~~~---~~V~svafspdG~~LA 375 (393)
T 4gq1_A 303 KNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ----HGLIQLINTYEKDSNSIPIQLG---MPIVDFCWHQDGSHLA 375 (393)
T ss_dssp -CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT----TTEEEEEETTCTTCCEEEEECS---SCEEEEEECTTSSEEE
T ss_pred EEEccccccccccCcceeEEEccCCCCEEEEEECC----CCEEEEEECCCCcEEEEecCCC---CcEEEEEEcCCCCEEE
Confidence 22 322 233 3444443 6789999999999988888877 8999999999999999
Q ss_pred EEeCCCeEEEEEC
Q 001358 595 AAGDDHVIKIWDM 607 (1092)
Q Consensus 595 ~~s~dg~i~iwd~ 607 (1092)
+++.+| +.+|.+
T Consensus 376 ~as~~G-v~lvrL 387 (393)
T 4gq1_A 376 IATEGS-VLLTRL 387 (393)
T ss_dssp EEESSE-EEEEEE
T ss_pred EEeCCC-eEEEEE
Confidence 999776 555554
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=3.1e-25 Score=252.73 Aligned_cols=307 Identities=9% Similarity=0.033 Sum_probs=241.7
Q ss_pred CCCceEEeecCCCceEEEEEc----CcC----cEEEEec--CCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 334 SSSPMSMDFHPVQHTLLLVGT----NVG----DTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~----~d~----~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
...|...+|++.|..++++|+ .|| +|+|||+ .+++.+.... +.+|...+..++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 124 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAG 124 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHH
Confidence 358899999999987888886 457 8999999 8988764322 556777777777
Q ss_pred ECC--------------CCCEEEEEeCC------CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC
Q 001358 404 WSP--------------DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1092)
Q Consensus 404 ~sp--------------dg~~las~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~ 463 (1092)
+++ .+..+++++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++.
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~ 198 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence 765 26677776654 799999998543 33 5678999999999999999 7888887
Q ss_pred CC---cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEE-EEecCCe--EEEEEcCCCCceEEecCCCCceEEEEE
Q 001358 464 DK---TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMAY 537 (1092)
Q Consensus 464 d~---~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~ 537 (1092)
++ .|++||+.+++.. .+..|...+.+++|+| ||+.|+ +++.++. |++||+.+++. ..+..+...+.+++|
T Consensus 199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 75 9999999999875 5667888999999954 677776 6666665 99999987654 556667778999999
Q ss_pred ecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceEE
Q 001358 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLT 614 (1092)
Q Consensus 538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~ 614 (1092)
+|||++|++++.. ++...|++||..+++.. .+..+. ..+..++|+|++++|++++.+ ..|++||+.+++..
T Consensus 275 spdg~~l~~~s~~-~g~~~i~~~d~~~~~~~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~- 348 (415)
T 2hqs_A 275 FPDSQNLAFTSDQ-AGRPQVYKVNINGGAPQ-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ- 348 (415)
T ss_dssp CTTSSEEEEEECT-TSSCEEEEEETTSSCCE-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-
T ss_pred CCCCCEEEEEECC-CCCcEEEEEECCCCCEE-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-
Confidence 9999999988742 23557999999988743 333333 678899999999999987754 68999999998874
Q ss_pred EEeCCCCCCCCceEEEccCCCEEEEEeCCC---eEEEEECCCCCeeeecccccccceeeeecCCcc
Q 001358 615 TIDAGGGLPENPRICFNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677 (1092)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 677 (1092)
.+..+ ..+..++|+|+|++|++++.++ .|++|++. +.....+..+...|.+++|+|...
T Consensus 349 ~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 349 VLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 34333 2588999999999999988876 79999987 456777888999999999997643
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=9.1e-24 Score=240.60 Aligned_cols=307 Identities=13% Similarity=0.115 Sum_probs=229.3
Q ss_pred cccceeEEEeeCCCCcEEEEEEe----CCC----cEEEEEC--CCCcee--EEEecCCcceEEEeeccc-----------
Q 001358 440 HVGNVNDLAFSAPCKQISVITCG----DDK----TIKVWDA--VTGSRT--YSFEGHGAPVYSLCPHAK----------- 496 (1092)
Q Consensus 440 h~~~v~~~~~s~d~~~l~l~s~~----~d~----~i~vwd~--~~~~~~--~~~~~~~~~v~~i~~~~~----------- 496 (1092)
+...+...+|++.|.. ++++|+ .|| .|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 61 ~~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 61 SAQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp SGGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred cccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence 3356788899999886 666776 567 8999999 999987 558899988887776541
Q ss_pred -CCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001358 497 -ENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1092)
Q Consensus 497 -~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1092)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.++ +...|++||+.+++..
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~- 216 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR- 216 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-
Confidence 113466666654 7999999975 44556666778999999999999999988542 2468999999999875
Q ss_pred EEeeccccCCceEEEEEcCCCCEEE-EEeCCCe--EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC-CC-
Q 001358 570 TYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-EN- 644 (1092)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg- 644 (1092)
.+..+. ..+.+++|+|+|+.|+ +++.++. |++||+.+++. ..+..+ ...+.+++|+|||++|++++. ++
T Consensus 217 ~l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~ 290 (415)
T 2hqs_A 217 QVASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGR 290 (415)
T ss_dssp EEECCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC--SSCEEEEEECTTSSEEEEEECTTSS
T ss_pred EeecCC---CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC--CCcccceEECCCCCEEEEEECCCCC
Confidence 455555 6899999999999888 5665554 99999998876 344333 345789999999999988876 34
Q ss_pred -eEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccc
Q 001358 645 -RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 723 (1092)
Q Consensus 645 -~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~ 723 (1092)
.|++|+..+++... +
T Consensus 291 ~~i~~~d~~~~~~~~-l--------------------------------------------------------------- 306 (415)
T 2hqs_A 291 PQVYKVNINGGAPQR-I--------------------------------------------------------------- 306 (415)
T ss_dssp CEEEEEETTSSCCEE-C---------------------------------------------------------------
T ss_pred cEEEEEECCCCCEEE-E---------------------------------------------------------------
Confidence 45555654331100 0
Q ss_pred eecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCC
Q 001358 724 QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 803 (1092)
Q Consensus 724 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 803 (1092)
. .+..
T Consensus 307 -------------------------------------------------------------------------~--~~~~ 311 (415)
T 2hqs_A 307 -------------------------------------------------------------------------T--WEGS 311 (415)
T ss_dssp -------------------------------------------------------------------------C--CSSS
T ss_pred -------------------------------------------------------------------------e--cCCC
Confidence 0 0223
Q ss_pred CeeEEEEecCCCEEEEEe-C---CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC---eEEEEEcCCc
Q 001358 804 AVPCFALSKNDAYLFSAS-G---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSS 876 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg---~v~iwd~~~~ 876 (1092)
.+.+++|+|||++|++++ + ..|++||+.+++.. .+..+. .+.+++|+| ++++|++++.++ .|++||+. +
T Consensus 312 ~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g 387 (415)
T 2hqs_A 312 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-G 387 (415)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-S
T ss_pred cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-C
Confidence 455677788888777765 2 47999999988763 455554 899999999 899999888877 89999987 5
Q ss_pred eeeEeeccccCCeEEEEEcCCCC
Q 001358 877 EVISKLEGHSKRVTGLVFSDALN 899 (1092)
Q Consensus 877 ~~~~~l~~h~~~V~~l~~spdg~ 899 (1092)
+....+.+|.+.|.+++|+|.-.
T Consensus 388 ~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 388 RFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CCEEECCCSSSEEEEEEECCCCC
T ss_pred CcEEEeeCCCCCCcCCccccccc
Confidence 66788899999999999999653
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.8e-23 Score=259.35 Aligned_cols=303 Identities=14% Similarity=0.079 Sum_probs=213.5
Q ss_pred CCCceEEeecCCCceEEEEEcC-cC-----cEEEEecCCCCceeeeeeeeeecccc-----cceeEEeeecCCCCcEEEE
Q 001358 334 SSSPMSMDFHPVQHTLLLVGTN-VG-----DTGLWDVNSGQKLFIRNFKVWDIGAC-----SMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~-d~-----~i~iwd~~~~~~~~~~~~~~~d~~~~-----~~~~~~~~l~~h~~~V~~l 402 (1092)
...|.+++|||||+ .|++++. |+ +|++||+.+++........-.....+ ........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 34799999999999 4677766 87 89999999998654321100000000 0000000000000347899
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCC--CccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358 403 VWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+|||||++|++++. +.|++||+.++. ... .+..|...+.+++|||||+ .|+.++ ++.|++||+.+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999987 899999999882 232 3567888899999999999 677776 56999999999887655
Q ss_pred EecCCcc----------------eEEEeecccCCccEEEEEecCC---------------------------------eE
Q 001358 481 FEGHGAP----------------VYSLCPHAKENIHFIFSISVDG---------------------------------KI 511 (1092)
Q Consensus 481 ~~~~~~~----------------v~~i~~~~~~~~~~l~s~~~dg---------------------------------~i 511 (1092)
...+... +.+++| ++||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 5444432 356777 55788899887765 78
Q ss_pred EEEEcCC-CCceEEec--CCCCceEEEEEecCCCEEEEEec-CCCCceeEEEEeCCCCeEEEEEeeccccCC---ceEEE
Q 001358 512 KAWLYDS-LGARVDYD--APGLGCTRMAYSANGRRLFSCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVV 584 (1092)
Q Consensus 512 ~vwd~~~-~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~ 584 (1092)
.+||+.+ ++...... .+...+..++| |||++|++... ....+..|++||..+++....+..+. .. .+..+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~ 342 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPLHNSL 342 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCCCSCC
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCcCCce
Confidence 8899887 66554433 35567899999 99999997764 23346789999999999887777654 12 34678
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECC-CCceEEEEeCCCCCCCCceE-EEccCCCEEEEEeC-CC--eEEEEECC
Q 001358 585 HFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIAN-EN--RIKILETP 652 (1092)
Q Consensus 585 ~~~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~-dg--~i~iw~~~ 652 (1092)
+|+|+|+.+++++.+|.+++|.+. ++. ...+..+ ...+..+ +|+|+|+.++..+. ++ .++||++.
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 999999988889999988888765 344 5555433 2346666 59999998765544 44 78888765
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.4e-22 Score=251.53 Aligned_cols=330 Identities=12% Similarity=0.016 Sum_probs=236.5
Q ss_pred ccceeEEEeeCCCCcEEEEEEeC-CC-----cEEEEECCCCceeEEEecCCcc------------------------eEE
Q 001358 441 VGNVNDLAFSAPCKQISVITCGD-DK-----TIKVWDAVTGSRTYSFEGHGAP------------------------VYS 490 (1092)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~~~-d~-----~i~vwd~~~~~~~~~~~~~~~~------------------------v~~ 490 (1092)
...+.+++|||||+ .|++++. |+ .|++||+.+++....+..+... +.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 44689999999999 7888887 88 8999999999887777655432 677
Q ss_pred EeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001358 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
++| ++||++|++++. +.|++||+.++. ....+..+...+..++|||||++|++++. +.|++||+.+++..
T Consensus 114 ~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-----~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-----RNLWVIDLASGRQM 185 (741)
T ss_dssp CEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-----TEEEEEETTTTEEE
T ss_pred eEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-----CcEEEEecCCCCEE
Confidence 777 557889998886 999999998873 44456666778999999999999998863 36999999998876
Q ss_pred EEEeeccc-------------cCCceEEEEEcCCCCEEEEEeCCC---------------------------------eE
Q 001358 569 RTYQGLQL-------------QHNSVSVVHFDTAKDQILAAGDDH---------------------------------VI 602 (1092)
Q Consensus 569 ~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~s~dg---------------------------------~i 602 (1092)
.....+.. ....+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 65443320 001147799999999999987665 78
Q ss_pred EEEECCC-CceEEEEeCCCCCCCCceEEEccCCCEEEEEeC-----CCeEEEEECCCCCeeeecccccccceeeeecCCc
Q 001358 603 KIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-----ENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1092)
Q Consensus 603 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 676 (1092)
++||+.+ ++.........+...+..++| |||++|++++. +..|++||..+++.......+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------- 331 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET------------- 331 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE-------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC-------------
Confidence 9999988 876554432123345789999 99999987764 456777776654322111000
Q ss_pred ccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCC
Q 001358 677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 756 (1092)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 756 (1092)
.+
T Consensus 332 -----------------------------------------------------------------------------~~- 333 (741)
T 2ecf_A 332 -----------------------------------------------------------------------------SP- 333 (741)
T ss_dssp -----------------------------------------------------------------------------CS-
T ss_pred -----------------------------------------------------------------------------CC-
Confidence 00
Q ss_pred eeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcC-Cce
Q 001358 757 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM-TFK 834 (1092)
Q Consensus 757 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~-~~~ 834 (1092)
.....+..++|+|||+++++++ +|.++||.+. +++
T Consensus 334 -------------------------------------------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~ 370 (741)
T 2ecf_A 334 -------------------------------------------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK 370 (741)
T ss_dssp -------------------------------------------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC
T ss_pred -------------------------------------------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC
Confidence 0001233567888888666665 4666666554 344
Q ss_pred eeEEecCCCCCeEEE-EEcCCCCCEEE-EEeCCC--eEEEEEcCC-ceeeEeeccccCCeEEEEEcCCCCEEEEEeCC--
Q 001358 835 TILTIMPPSPTATSL-AFNPHDNNVIA-IGMDDS--TILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGD-- 907 (1092)
Q Consensus 835 ~~~~~~~~~~~i~~l-~~s~~d~~~la-sg~~dg--~v~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D-- 907 (1092)
...+..+...+..+ +|+| +++.|+ +++.++ .++||++.. ++....+.. ...+..++|||||++|+....+
T Consensus 371 -~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~ 447 (741)
T 2ecf_A 371 -AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNS 447 (741)
T ss_dssp -EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETT
T ss_pred -eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCC
Confidence 67777777788887 5999 777664 555555 899999875 665677775 6678999999999998876544
Q ss_pred --CcEEEEEcCCC
Q 001358 908 --AQIFVWDVDGW 918 (1092)
Q Consensus 908 --g~i~iwd~~~~ 918 (1092)
..+.+|+..++
T Consensus 448 ~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 448 TPPQIELFRANGE 460 (741)
T ss_dssp EEEEEEEEETTSC
T ss_pred CCCeEEEEEcCCC
Confidence 46889998654
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=2.1e-23 Score=258.08 Aligned_cols=309 Identities=9% Similarity=0.090 Sum_probs=221.7
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC---cEEEEEECCCCCEEE
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLG 412 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~~la 412 (1092)
.+.+++|||||+ ++++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 578899999999 5666 6889999999999986643 445554 499999999999999
Q ss_pred EEeCC---------CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001358 413 VAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 413 s~~~d---------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 483 (1092)
+++.+ +.+.+||+.+++. .......+|...+.+++|||||+ .|+.++. +.|++||+.+++..+....
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99764 7889999999875 22222334555689999999999 5777764 7999999999988776655
Q ss_pred CCcce------------------EEEeecccCCccEEEEEecCC----------------------------------eE
Q 001358 484 HGAPV------------------YSLCPHAKENIHFIFSISVDG----------------------------------KI 511 (1092)
Q Consensus 484 ~~~~v------------------~~i~~~~~~~~~~l~s~~~dg----------------------------------~i 511 (1092)
+...+ .+++| ++||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 66777 55788898887553 79
Q ss_pred EEEEcCCCCceEEecCC------CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce----
Q 001358 512 KAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV---- 581 (1092)
Q Consensus 512 ~vwd~~~~~~~~~~~~~------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---- 581 (1092)
++||+.+++....+..+ ...+..++|+|||+++++.......+..|++||..+++....+..+. ...+
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~ 308 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQN 308 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccC
Confidence 99999887765555543 45789999999999987776544456789999999998877765543 1333
Q ss_pred EEEEEcCCCCEEEE--EeCCC------eEEEEE-CCCCce--EEEEeCCCCCCCCce-EEEccCCCEEEEEeCC---CeE
Q 001358 582 SVVHFDTAKDQILA--AGDDH------VIKIWD-MNKVQL--LTTIDAGGGLPENPR-ICFNKNGTLLAVIANE---NRI 646 (1092)
Q Consensus 582 ~~~~~~~~~~~l~~--~s~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~~~~l~~~~~d---g~i 646 (1092)
..++|+|||+.|+. +..++ .|++|| ..++.. ...+... . ..+.. ++|+|||+.|+..+.+ +.+
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~ 386 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRR 386 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcce
Confidence 37899999998775 44666 577777 344441 3333321 1 22343 6899999999877665 789
Q ss_pred EEEECCCCC--eeeeccc---ccccceeeeecCC
Q 001358 647 KILETPESN--SVDAAGV---LSDNLRKLSVNPI 675 (1092)
Q Consensus 647 ~iw~~~~~~--~~~~~~~---~~~~v~~~~~~~~ 675 (1092)
++|++.... ....+.. +...+..++++|+
T Consensus 387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spd 420 (723)
T 1xfd_A 387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHS 420 (723)
T ss_dssp EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTT
T ss_pred EEEEEeCCCCCCcceecccccCCCCeEEEEECCC
Confidence 999986432 2233332 3444556666543
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=9.2e-23 Score=252.39 Aligned_cols=385 Identities=11% Similarity=0.082 Sum_probs=254.8
Q ss_pred ceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC---------Ce
Q 001358 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HV 601 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~ 601 (1092)
.+.+++|+|||+++++ +. ++.|++||..+++....+.++......+.+++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997755 32 5579999999999887777665211248999999999999998764 78
Q ss_pred EEEEECCCCceEEEEeC-CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccccc
Q 001358 602 IKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1092)
Q Consensus 602 i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1092)
+++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|+..+++.......+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~------------- 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV------------- 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------------
Confidence 89999999887 33332 222334788999999999999987 799999998775544332211110
Q ss_pred ccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC-CeeE
Q 001358 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHL 759 (1092)
Q Consensus 681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~ 759 (1092)
+..+.. -|-.. ..-...+.+++|||||+.|+.++.+ +.+.
T Consensus 158 --------------------~~~g~~-----~~v~~--------------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~ 198 (723)
T 1xfd_A 158 --------------------IYNGLS-----DWLYE--------------EEILKTHIAHWWSPDGTRLAYAAINDSRVP 198 (723)
T ss_dssp --------------------EEEEEC-----CHHHH--------------HTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred --------------------eECccc-----ceeEE--------------EEeccCcceEEECCCCCEEEEEEECCCccc
Confidence 000000 00000 0011245789999999999888765 4666
Q ss_pred EeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEe
Q 001358 760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 839 (1092)
Q Consensus 760 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~ 839 (1092)
+|++.... + .+...+..+.|+++|.. ..+..|++||+.+++....+
T Consensus 199 ~~~~~~~~--------------------~-----------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 199 IMELPTYT--------------------G-----------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp EEEECCCS--------------------S-----------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEEC
T ss_pred eEEeeccC--------------------C-----------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEe
Confidence 77654211 0 02234677888888763 12357999999998876666
Q ss_pred cCC------CCCeEEEEEcCCCCCEEEEEeC----CCeEEEEEcCCceeeEeeccc-cCCeE----EEEEcCCCCEEEEE
Q 001358 840 MPP------SPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEVISKLEGH-SKRVT----GLVFSDALNILVSS 904 (1092)
Q Consensus 840 ~~~------~~~i~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~~~~~l~~h-~~~V~----~l~~spdg~~l~s~ 904 (1092)
..+ ...+..++||| |+++|++... +..|++||+.++++...+..+ .+.+. .++|||||+.|+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred eCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 654 56789999999 8888877653 358999999999877666543 34343 78999999987754
Q ss_pred --eCCC------cEEEEE-cCCCceeeeeeeecC-CCCcCCCCCceE-EEEecCCCEEEE-EeC---CcEEEEEcCCce-
Q 001358 905 --GGDA------QIFVWD-VDGWGIQTCRSLQTP-DGVMTLAPSETH-IQFHKDQTRFLL-VHE---THLAIYEAEELT- 968 (1092)
Q Consensus 905 --s~Dg------~i~iwd-~~~~~~~~~~~~~~~-~~~~~~~~~v~~-l~~s~dg~~la~-~~d---~~v~lwd~~~~~- 968 (1092)
..++ .|.+|| ..+++.. +.... .+.. .+.. ++|||||+.|+. +.+ +.++||++....
T Consensus 324 ~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 324 RAIPQGGRGKFYHITVSSSQPNSSND---NIQSITSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSC---CCCBSCCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred EecccCCCcceeEEEEEeccCCCCcc---ceeEeecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 4666 466677 3433200 01111 1222 2444 699999999986 444 679999986432
Q ss_pred -eeeeeccC--CCcCEEEEEEecCCCEEEEEeCC-C--cEEEEECCCCceEEee
Q 001358 969 -CLKQWFPI--SSVPISQATFSCDCRMVFTSFVD-G--TLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 969 -~~~~~~~~--h~~~v~~l~fs~dg~~l~t~s~D-g--~i~vwd~~~~~~~~~~ 1016 (1092)
....+... |...+..++|||||++|+..... + ...+++..++..+..+
T Consensus 397 ~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 397 FNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp CCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred CCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 23222221 66778999999999988865432 2 3455676666554433
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.8e-21 Score=215.54 Aligned_cols=281 Identities=10% Similarity=0.067 Sum_probs=206.7
Q ss_pred EeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC-CC
Q 001358 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KH 418 (1092)
Q Consensus 340 v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~-d~ 418 (1092)
..|++++++++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777877899999999999999999987754 22345566 9999999998777765 88
Q ss_pred EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC-C--cEEEEECCCCceeEEEecCCcceEEEeecc
Q 001358 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d-~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
.|.+||+.+++.. ...+..+..+..+++|+|||+ +++++..+ + .|.+||+.+++.+..+..+. ....++|++
T Consensus 63 ~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~sp 137 (331)
T 3u4y_A 63 TLVQIETQLEPPK--VVAIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISP 137 (331)
T ss_dssp EEEEEECSSSSCE--EEEEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECT
T ss_pred eEEEEECCCCcee--EEecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECC
Confidence 9999999998751 224555666666699999999 56654444 3 89999999999988876544 457888855
Q ss_pred cCCcc-EEEEEecCCe-EEEEEcCCCCceE----EecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE--
Q 001358 496 KENIH-FIFSISVDGK-IKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-- 567 (1092)
Q Consensus 496 ~~~~~-~l~s~~~dg~-i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~-- 567 (1092)
+++ ++++...++. |.+|+++...... ...........++|+|||++++++.. .++.|.+||+.+++.
T Consensus 138 --dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 138 --NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT 212 (331)
T ss_dssp --TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred --CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence 665 4455566688 9999998655432 22233456789999999998777653 256799999999988
Q ss_pred -EEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCce--EEEEeCC----CC-CCCCceEEEccCCCEEE
Q 001358 568 -KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL--LTTIDAG----GG-LPENPRICFNKNGTLLA 638 (1092)
Q Consensus 568 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~~~~l~ 638 (1092)
+..+... ..+..++|+|+++++++++ .++.|.+||..+++. +..+... .. ......++|+|+|++|+
T Consensus 213 ~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 213 LLNAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp EEEEEECS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred eeeeccCC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 6666643 4678899999999887665 578899999999887 4444322 11 11124589999999887
Q ss_pred EEeC-CCeEEEEECCCC
Q 001358 639 VIAN-ENRIKILETPES 654 (1092)
Q Consensus 639 ~~~~-dg~i~iw~~~~~ 654 (1092)
+++. ++.|.+|++...
T Consensus 289 v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 289 ISANISRELKVFTISGK 305 (331)
T ss_dssp EEETTTTEEEEEETTSC
T ss_pred EecCCCCcEEEEEecCC
Confidence 6665 579999999865
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=4.5e-21 Score=236.33 Aligned_cols=238 Identities=9% Similarity=-0.003 Sum_probs=166.0
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCCc-cceEEecccc-----------------cceeEEEeeCCCCcEEEEE
Q 001358 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHV-----------------GNVNDLAFSAPCKQISVIT 460 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~-----------------~~v~~~~~s~d~~~l~l~s 460 (1092)
+..+.|+ |+.+++++.++ | +||+.+|+.+ .. +..|. ..|.+++|||| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4457788 66777777888 8 9999998763 32 22332 46999999999 5 3443
Q ss_pred EeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC-----CCceEEecCCCCc----
Q 001358 461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVDYDAPGLG---- 531 (1092)
Q Consensus 461 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~---- 531 (1092)
+. ++.|++||+.+++... +..+...+.+++|+ +||+.|+++ .++.|++||+.+ ++...........
T Consensus 98 ~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTY-LFDTNEETASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp EE-TTEEEEEETTTTEEEE-EECCTTCCTTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred EE-CCEEEEEECCCCceEE-ccCCcccccCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 33 5999999999887654 44567778888885 577888884 789999999988 6655443333332
Q ss_pred ----------eEEEEEecCCCEEEEEecC-----------------------------CCCceeEEEEeCCCCeEEEEEe
Q 001358 532 ----------CTRMAYSANGRRLFSCGTS-----------------------------KEGESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 532 ----------i~~~~~s~dg~~l~~~~~~-----------------------------~~~~~~i~iwd~~~~~~~~~~~ 572 (1092)
+.+++|+|||++|++++.+ ...+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 4789999999999988732 1246789999999988765543
Q ss_pred eccccCCceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCceEEEEe-CCC--CCCCCceEEEcc--CCCEEEEEeC
Q 001358 573 GLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID-AGG--GLPENPRICFNK--NGTLLAVIAN 642 (1092)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~-~~~--~~~~v~~v~~s~--~~~~l~~~~~ 642 (1092)
... +...+..++|+||++++++++.++ .|++||+.+++....+. ... ....+..++|+| ||++++++..
T Consensus 253 ~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 253 GEP-KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp CSC-TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred CCC-CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 211 236789999999999999987765 89999999984433332 111 111246788999 8888888877
Q ss_pred CCeEEEEECC
Q 001358 643 ENRIKILETP 652 (1092)
Q Consensus 643 dg~i~iw~~~ 652 (1092)
++.+++|.+.
T Consensus 332 ~g~~~l~~~~ 341 (706)
T 2z3z_A 332 DGWNHLYLYD 341 (706)
T ss_dssp TSSCEEEEEE
T ss_pred CCccEEEEEE
Confidence 7777777654
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=5.9e-21 Score=213.57 Aligned_cols=274 Identities=11% Similarity=0.085 Sum_probs=213.1
Q ss_pred CCceEEeecCCCceEEEEEcC------cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC
Q 001358 335 SSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~------d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
..+..++|+|||++++++... ++.|.+||..+++.+.... ....+..++|+|||
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~s~dg 100 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATINNTT 100 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEEETTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEECCCC
Confidence 478899999999865555433 6789999999998775421 22347789999999
Q ss_pred CEEEEE-eCCCEEEEEEccCCCCccceEEeccccc---------ceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358 409 SLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVG---------NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 409 ~~las~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~---------~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+++.+++...+.++.|.+||..+++.+
T Consensus 101 ~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~ 177 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK 177 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred CEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence 976655 457899999999987654 3333322 278899999999522222246889999999999999
Q ss_pred EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC----CCCceEEEEEecCCCEEEEEecCCCCc
Q 001358 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
..+..+...+..++|+ ++++++++++.++.|.+||..+.+....+.. +...+..++|+|+|++++++.. .+
T Consensus 178 ~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~ 252 (353)
T 3vgz_A 178 TAIQNTGKMSTGLALD--SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KA 252 (353)
T ss_dssp EEECCCCTTCCCCEEE--TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SS
T ss_pred EEecCCCCccceEEEC--CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CC
Confidence 8887666667888885 4778899999999999999998877665554 3446788999999998887753 25
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001358 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
+.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+..++|+|+
T Consensus 253 ~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~d 324 (353)
T 3vgz_A 253 AEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSAD 324 (353)
T ss_dssp SEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTT
T ss_pred CEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCC
Confidence 679999999999988877543 25689999999777665 68999999999999988887653 3689999999
Q ss_pred CCEEEEEeCCC
Q 001358 634 GTLLAVIANEN 644 (1092)
Q Consensus 634 ~~~l~~~~~dg 644 (1092)
|++++++..++
T Consensus 325 g~~l~v~~~~~ 335 (353)
T 3vgz_A 325 GKTLYVSVKQK 335 (353)
T ss_dssp SCEEEEEEECC
T ss_pred CCEEEEEEccc
Confidence 99888776653
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2.2e-21 Score=239.10 Aligned_cols=243 Identities=11% Similarity=0.087 Sum_probs=170.2
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCC-----ceeeEEecCCCCC--------------eEEEEEcCCCCCEEEEEe-
Q 001358 804 AVPCFALSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPT--------------ATSLAFNPHDNNVIAIGM- 863 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~-----~~~~~~~~~~~~~--------------i~~l~~s~~d~~~lasg~- 863 (1092)
.+.+++|||||++|+++.++.|++||+.+ ++.......+... +.+++||| |+++|++++
T Consensus 122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~ 200 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM 200 (706)
T ss_dssp CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence 34556788888888877778888888877 6655444333332 58999999 899999987
Q ss_pred --------------------------------CCCeEEEEEcCCceeeEeec--cccCCeEEEEEcCCCCEEEEEeCCC-
Q 001358 864 --------------------------------DDSTILIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDA- 908 (1092)
Q Consensus 864 --------------------------------~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg- 908 (1092)
.+..|++||+.+++...... .|...+.+++|+|||++|++++.|+
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA 280 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence 44689999999988655442 4777899999999999999988776
Q ss_pred ----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEec--CCCEEEEE-eCCcEEEEEcC-CceeeeeeccCCCcC
Q 001358 909 ----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRFLLV-HETHLAIYEAE-ELTCLKQWFPISSVP 980 (1092)
Q Consensus 909 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~la~~-~d~~v~lwd~~-~~~~~~~~~~~h~~~ 980 (1092)
.|++||+.+++.............. ..+..++|+| ||++++++ .++.++||++. ++..+.. +..|...
T Consensus 281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~~---~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~-l~~~~~~ 356 (706)
T 2z3z_A 281 QNECKVNAYDAETGRFVRTLFVETDKHYV---EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ-VTKGEWE 356 (706)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEECSSCC---CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE-CCCSSSC
T ss_pred CCeeEEEEEECCCCceeeEEEEccCCCeE---CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe-cCCCCeE
Confidence 8999999987322211111111111 1246789999 99988875 56778888876 5555555 4556777
Q ss_pred EEE-EEEecCCCEEEEEeCC-C----cEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCC--
Q 001358 981 ISQ-ATFSCDCRMVFTSFVD-G----TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-- 1052 (1092)
Q Consensus 981 v~~-l~fs~dg~~l~t~s~D-g----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d-- 1052 (1092)
+.. ++|+|||+.|+.++.+ + .|..||+.++... .+. +...+ .+++|+| |+.++++++.+
T Consensus 357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~---------~~~~~--~~~~~sp-dg~~l~~~~~~~~ 423 (706)
T 2z3z_A 357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-DLT---------PESGM--HRTQLSP-DGSAIIDIFQSPT 423 (706)
T ss_dssp EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC---------CSSSE--EEEEECT-TSSEEEEEEECSS
T ss_pred EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-ecc---------CCCce--EEEEECC-CCCEEEEEecCCC
Confidence 876 7999999988766554 3 6777787777532 222 12223 3688999 57777776554
Q ss_pred --CcEEEEecCCCC
Q 001358 1053 --GEVYVIEPNEPG 1064 (1092)
Q Consensus 1053 --g~v~~w~~~~~~ 1064 (1092)
+.|++||+...+
T Consensus 424 ~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 424 VPRKVTVTNIGKGS 437 (706)
T ss_dssp CSCEEEEEESSSCE
T ss_pred CCcEEEEEECCCCe
Confidence 469999986543
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=2.2e-20 Score=207.86 Aligned_cols=277 Identities=14% Similarity=0.151 Sum_probs=193.6
Q ss_pred CceEEEEEcCcCcEEEEecCC-CCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCC-CEEEEE
Q 001358 346 QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLY 423 (1092)
Q Consensus 346 g~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d-~~i~iw 423 (1092)
+++++++++.|+.|.+||+.. ++..... ...|...+.+++|+|||++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 345677778899999999964 3322110 22367789999999999999998876 899999
Q ss_pred Ecc--CCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC---CCceeEEEecCCcceEEEeecccCC
Q 001358 424 AYH--GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCPHAKEN 498 (1092)
Q Consensus 424 d~~--~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~i~~~~~~~ 498 (1092)
++. +++. .....+..+. .+.+++|+|+++. +++++..++.|.+||+. +++.+..+..+ ..+.+++|+ ++
T Consensus 66 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s--~d 139 (343)
T 1ri6_A 66 RIAPDDGAL-TFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS--PD 139 (343)
T ss_dssp EECTTTCCE-EEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC--TT
T ss_pred EecCCCCce-eeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC--CC
Confidence 998 5442 2222344333 7899999999994 33444458899999994 34455555543 357778885 46
Q ss_pred ccEEEEEe-cCCeEEEEEcCC-CCceE----EecC-CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC--CCeE--
Q 001358 499 IHFIFSIS-VDGKIKAWLYDS-LGARV----DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI-- 567 (1092)
Q Consensus 499 ~~~l~s~~-~dg~i~vwd~~~-~~~~~----~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~-- 567 (1092)
++++++++ .++.|.+||+.. +.... .... ....+..++|+|+|+++++++. .++.|.+|+.. +++.
T Consensus 140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence 67777776 899999999987 43321 2222 3447888999999998877652 25679999995 3443
Q ss_pred EEEEeecc---ccCCceEEEEEcCCCCEEEEE-eCCCeEEEEECC--CC--ceEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001358 568 KRTYQGLQ---LQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMN--KV--QLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1092)
Q Consensus 568 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~--~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1092)
...+.... .....+..++|+|++++++++ ..++.|.+||+. ++ +.+..+..+. .+..++|+|+|++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence 22222111 012356789999999988754 478999999998 33 3444454432 2789999999999888
Q ss_pred Ee-CCCeEEEEECC
Q 001358 640 IA-NENRIKILETP 652 (1092)
Q Consensus 640 ~~-~dg~i~iw~~~ 652 (1092)
++ .++.+.+|++.
T Consensus 294 ~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 294 AGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred ecCCCCeEEEEEEc
Confidence 88 57999999554
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=2.6e-20 Score=207.36 Aligned_cols=205 Identities=10% Similarity=0.161 Sum_probs=144.2
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEEc---CCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCC-c
Q 001358 804 AVPCFALSKNDAYLFSAS--GGVISLYIV---MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-S 876 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~---~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~-~ 876 (1092)
.+..++|+|+|+++++++ ++.|.+||+ .+.+.+..+..+ ..+.+++|+| ++++|++++ .++.|++||+.+ +
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEecCCC
Confidence 456788888888776665 577999988 444455555533 4688999999 888787777 899999999987 6
Q ss_pred eeeE----eecc-ccCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCC--CceeeeeeeecCCCCcCCCCCceEEEEecCC
Q 001358 877 EVIS----KLEG-HSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 877 ~~~~----~l~~-h~~~V~~l~~spdg~~l~s~s-~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 948 (1092)
+... .+.. ....+.+++|+|++++|+.++ .++.|.+|++.. ++......+............+..++|+|||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 5432 2232 345788999999999776554 789999999954 4433223333222211111356789999999
Q ss_pred CEEEE-E-eCCcEEEEEcC--Cc--eeeeeeccCCCcCEEEEEEecCCCEEEEEe-CCCcEEEEEC--CCCce
Q 001358 949 TRFLL-V-HETHLAIYEAE--EL--TCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SNLEV 1012 (1092)
Q Consensus 949 ~~la~-~-~d~~v~lwd~~--~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s-~Dg~i~vwd~--~~~~~ 1012 (1092)
++|++ . .++.|.+||+. ++ +.+.. ...+. .+..++|+|||++|++++ .++.|.+|++ .+|++
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGF-QPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEE-EECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeee-ecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 98886 3 57899999998 33 33333 22233 388999999999988887 5799999955 46644
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=4.1e-20 Score=205.14 Aligned_cols=278 Identities=13% Similarity=0.096 Sum_probs=204.2
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEE-EeCCCeEEEEECCCCCeeeeccccccccee
Q 001358 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRK 669 (1092)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 669 (1092)
+++++++.++.|++||..+++.+..+........+..++|+|+|+++++ +..++.|.+||..+++....+.....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~---- 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT----
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc----
Confidence 4688899999999999999999888875432113678999999987654 45578999999887644332210000
Q ss_pred eeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEE
Q 001358 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1092)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 749 (1092)
+
T Consensus 78 ----------------------------------------------------------------------------~--- 78 (337)
T 1pby_B 78 ----------------------------------------------------------------------------E--- 78 (337)
T ss_dssp ----------------------------------------------------------------------------T---
T ss_pred ----------------------------------------------------------------------------c---
Confidence 0
Q ss_pred EEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE---------
Q 001358 750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--------- 820 (1092)
Q Consensus 750 ~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~--------- 820 (1092)
.+...+.+++|+|||++++++
T Consensus 79 --------------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 108 (337)
T 1pby_B 79 --------------------------------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELT 108 (337)
T ss_dssp --------------------------------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred --------------------------------------------------cccccccceEECCCCCEEEEEecccccccc
Confidence 000012234555555555554
Q ss_pred ----eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecccc--CCeEEEEE
Q 001358 821 ----SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS--KRVTGLVF 894 (1092)
Q Consensus 821 ----sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~ 894 (1092)
.++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+. .+ +.|
T Consensus 109 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~ 181 (337)
T 1pby_B 109 HFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAE---TYA 181 (337)
T ss_dssp CEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTT---TBC
T ss_pred cccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCC---cee
Confidence 358899999999988877764 45678899999 88888877 6899999999999887776544 33 378
Q ss_pred cCCCCEEEEEeCCC------------------------cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCE
Q 001358 895 SDALNILVSSGGDA------------------------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950 (1092)
Q Consensus 895 spdg~~l~s~s~Dg------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 950 (1092)
+||++.++..+.++ .|.+||+.+++... ..... +. ..+.+++|+|||++
T Consensus 182 s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~---~~---~~~~~~~~s~dg~~ 254 (337)
T 1pby_B 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM-REVRI---MD---VFYFSTAVNPAKTR 254 (337)
T ss_dssp CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE-EEEEE---CS---SCEEEEEECTTSSE
T ss_pred CCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE-eecCC---CC---CceeeEEECCCCCE
Confidence 99998776554332 46899999877541 11211 11 24778999999999
Q ss_pred EEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeecc
Q 001358 951 FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 951 la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
++++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|.+||+.+++.+..+..
T Consensus 255 l~~~-~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 255 AFGA-YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEEe-CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 9888 79999999999988776443 34678999999999999999999999999999999888763
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=2.9e-20 Score=206.38 Aligned_cols=280 Identities=10% Similarity=0.051 Sum_probs=207.8
Q ss_pred EEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC-cEEEEEECCCCCEEEEE-eCCCEEEEEEcc
Q 001358 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SVNRVVWSPDGSLLGVA-YSKHIVQLYAYH 426 (1092)
Q Consensus 349 llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~-~V~~l~~spdg~~las~-~~d~~i~iwd~~ 426 (1092)
++++++.+++|.+||+.+++.+.... .++.. .+..++|+|||++++++ +.++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 68889999999999999988765421 12222 47889999999877554 567899999999
Q ss_pred CCCCccceEEecc---cccceeEEEeeCCCCcEEEEEEe------------CCCcEEEEECCCCceeEEEecCCcceEEE
Q 001358 427 GGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 427 ~~~~~~~~~~l~~---h~~~v~~~~~s~d~~~l~l~s~~------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
+++.+... .... |...+.+++|+|||+ .+++++ .++.|.+||+.+++.+..+.. ...+..+
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 98755422 1111 233678899999999 455554 579999999999998887764 4457777
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCC------------------
Q 001358 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------------------ 553 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~------------------ 553 (1092)
+|+ +++++|+++ ++.|.+||+.+.+....+...... ..+.|+|||+.++..+.....
T Consensus 141 ~~s--~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 1pby_B 141 AWA--RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp EEC--TTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred EEC--CCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence 774 466777777 689999999988776655543310 123789999877655431110
Q ss_pred --ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358 554 --ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 554 --~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
...|.+||..+++.. .+.... +...+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++|+
T Consensus 216 ~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s 288 (337)
T 1pby_B 216 AYRTGLLTMDLETGEMA-MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNVS 288 (337)
T ss_dssp GEEEEEEEEETTTCCEE-EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEEC
T ss_pred ccccceEEEeCCCCCce-EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEEC
Confidence 014799999998875 322211 22568899999999999888 7999999999999888887543 46899999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCeeeeccc
Q 001358 632 KNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1092)
|+|+++++++.++.|.+||+.+++.+..+..
T Consensus 289 ~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 289 TDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 9999999999999999999999887766653
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=1.1e-19 Score=201.16 Aligned_cols=284 Identities=11% Similarity=0.034 Sum_probs=195.5
Q ss_pred EEecCCcE-EEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEE
Q 001358 741 TYNNGGQA-IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 819 (1092)
Q Consensus 741 ~~s~~g~~-l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~ 819 (1092)
.|.+++.. +++...++.|.+|+... ++....... +...+ .++|+|||+++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~~----~~~~~-~~~~s~dg~~l~~ 56 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDT----------------------LEILNQITL----GYDFV-DTAITSDCSNVVV 56 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTT----------------------CCEEEEEEC----CCCEE-EEEECSSSCEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcc----------------------cceeeeEEc----cCCcc-eEEEcCCCCEEEE
Confidence 35555555 55666678888887543 332333322 34445 9999999997777
Q ss_pred Ee--CCeEEEEEcCCcee-eEEecCCCCCeEEEEEcCCCCCEEEEEeCCC---eEEEEEcCCceeeEeeccccCCeEEEE
Q 001358 820 AS--GGVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSEVISKLEGHSKRVTGLV 893 (1092)
Q Consensus 820 ~s--dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg---~v~iwd~~~~~~~~~l~~h~~~V~~l~ 893 (1092)
++ ++.|.+||..+++. ...+..+.....+++|+| ++++|+++..++ .|.+||+.+++.+..+..+ ..+.+++
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~ 134 (331)
T 3u4y_A 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIA 134 (331)
T ss_dssp EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEE
T ss_pred EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceE
Confidence 65 57999999999987 777766666665699999 899888655553 8999999999988887754 4578999
Q ss_pred EcCCCCEEEEE-eCCCc-EEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCCcEEEEEcCCcee
Q 001358 894 FSDALNILVSS-GGDAQ-IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC 969 (1092)
Q Consensus 894 ~spdg~~l~s~-s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~v~lwd~~~~~~ 969 (1092)
|+|||++|+++ ..++. |.+|++................. ..+..++|+|||++++++ .++.|.+||+.+++.
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG----TRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS----SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 99999865554 55688 99999986432211111111111 247899999999977663 467899999998887
Q ss_pred ---eeeeccCCCcCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCce--EEeeccccccCCCCccCccc-ceEEEECCCC
Q 001358 970 ---LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEV--QCRILSTAYLRPTTSCLHVY-PHAIAAHPLK 1042 (1092)
Q Consensus 970 ---~~~~~~~h~~~v~~l~fs~dg~~l~t~s-~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~-~~~~~~~p~~ 1042 (1092)
+..+. +...+..++|+|||++|++++ .++.|.+||+.+++. +..+....... ..... ...++|+|+
T Consensus 211 ~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~spd- 283 (331)
T 3u4y_A 211 ITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLID----PRPLFGANQMALNKT- 283 (331)
T ss_dssp CEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCC----CGGGTTCCCEEECTT-
T ss_pred cceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccC----CCCcccccceEECCC-
Confidence 65533 346778899999999776655 478899999999987 33332111011 11111 134789994
Q ss_pred CCEEEEE-eCCCcEEEEecCCCC
Q 001358 1043 PTQFAVG-LTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1043 ~~~l~~~-~~dg~v~~w~~~~~~ 1064 (1092)
+.+|+++ ..++.|.+||+....
T Consensus 284 g~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SSEEEEEETTTTEEEEEETTSCE
T ss_pred CCEEEEecCCCCcEEEEEecCCc
Confidence 6666554 456799999997544
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=8.9e-21 Score=206.01 Aligned_cols=257 Identities=14% Similarity=0.121 Sum_probs=188.0
Q ss_pred EEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccC-CCC
Q 001358 352 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG-GSD 430 (1092)
Q Consensus 352 sg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~-~~~ 430 (1092)
.++.|++|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 44678999999999887553 345788999999999999999986 77899999998 764
Q ss_pred ccceEEeccc-ccceeEEEeeCCCCcEEEEEEe--CCCcEEEE--ECCCCceeEEEecCCcceEEEeecccCCccEEE-E
Q 001358 431 ARQQLEIDAH-VGNVNDLAFSAPCKQISVITCG--DDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-S 504 (1092)
Q Consensus 431 ~~~~~~l~~h-~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~-s 504 (1092)
.. ...+| ...+.+++|+||++ .+++++ .++...|| +..+++ ...+..+. .+..++|++ +++.|+ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp--dg~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP--DGKSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT--TSSEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC--CCCEEEEE
Confidence 43 23344 46789999999999 677777 33445555 545554 44454343 477888854 666666 7
Q ss_pred EecCCeEEEEEcCCC-CceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceE
Q 001358 505 ISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVS 582 (1092)
Q Consensus 505 ~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~ 582 (1092)
++.++.+++|+++.. .....+..+...+.+++|+|+|+++++++.. ++.+.+|+.. .+.....+..+. ..+.
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---~~~~ 220 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSA---YGDW 220 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCS---EEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCC---cccC
Confidence 889999999997543 3445566677789999999999998877631 3346666654 344555666555 6788
Q ss_pred EEEEcCCCCEEEEEeCC-----------CeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358 583 VVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 583 ~~~~~~~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
.++|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|++++|++++.+.
T Consensus 221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999999888765 569999999887654443222234588899999999999887753
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=2.3e-19 Score=200.59 Aligned_cols=249 Identities=13% Similarity=0.125 Sum_probs=195.7
Q ss_pred CCcEEEEEECCCCCEEEEEeC-------CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEE
Q 001358 396 GVSVNRVVWSPDGSLLGVAYS-------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~-------d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 468 (1092)
...+..++|+|||++|++++. ++.|.+||..+++.+.. +. ....+..++|+|+|+. ++++...++.|.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v~ 114 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---IH-NDLKPFGATINNTTQT-LWFGNTVNSAVT 114 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---EE-ESSCCCSEEEETTTTE-EEEEETTTTEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---Ee-cCCCcceEEECCCCCE-EEEEecCCCEEE
Confidence 356889999999999988874 56899999999875553 32 2345788999999985 456667789999
Q ss_pred EEECCCCceeEEEecCCcc---------eEEEeecccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCceEEEEE
Q 001358 469 VWDAVTGSRTYSFEGHGAP---------VYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 537 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~---------v~~i~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 537 (1092)
+||..+++.+..+..+... +..+++++ ++.++++++ .++.|.+||..+.+....+......+..++|
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL 192 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence 9999999998888765432 57788854 556666655 5789999999988887777755666788999
Q ss_pred ecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc-cCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceEEE
Q 001358 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTT 615 (1092)
Q Consensus 538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~ 615 (1092)
+|+|++++++.. ++.|.+||..+++.+..+..... +...+..++|+|+++++++++. ++.|.+||..+++.+..
T Consensus 193 s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 268 (353)
T 3vgz_A 193 DSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK 268 (353)
T ss_dssp ETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 999999998864 56799999999999887765221 2356788999999998877664 59999999999999888
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCCeeee
Q 001358 616 IDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDA 659 (1092)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~ 659 (1092)
+.... ...++|+|+|++++++. .++.|.+||..+++.+..
T Consensus 269 ~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 269 VAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT 309 (353)
T ss_dssp EECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence 87543 25799999999766665 689999999987755443
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=232.31 Aligned_cols=378 Identities=12% Similarity=0.041 Sum_probs=244.2
Q ss_pred EEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC---------CCeEEE
Q 001358 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------DHVIKI 604 (1092)
Q Consensus 534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---------dg~i~i 604 (1092)
.++|+|||++++++ . ++.|++||..+++....+.++......+.+++|+|||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 57899999655543 2 557999999999988777765411124889999999999998876 789999
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccccccccc
Q 001358 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 684 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 684 (1092)
||+.+++.+...... ..+..++|||||+.|+.+. ++.|++|++.+++..........
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~------------------- 151 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE------------------- 151 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT-------------------
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc-------------------
Confidence 999998763111111 3478899999999999986 68999999987754432210000
Q ss_pred CCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC-CeeEEeee
Q 001358 685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRW 763 (1092)
Q Consensus 685 ~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~lw~~ 763 (1092)
..+..|..+ .++.- .-.....+++|||||+.|+.++.| +.+.+|.+
T Consensus 152 --------------~~v~~g~~~---~v~~e----------------e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~ 198 (719)
T 1z68_A 152 --------------NKIFNGIPD---WVYEE----------------EMLATKYALWWSPNGKFLAYAEFNDTDIPVIAY 198 (719)
T ss_dssp --------------TTEEESSCC---HHHHH----------------HTTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred --------------CCeEccccc---ceeee----------------ecccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence 000000000 00000 001123478999999999988765 55556654
Q ss_pred cCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceee-------
Q 001358 764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI------- 836 (1092)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~------- 836 (1092)
..... .+...+..+.+...|.. .....|++||+.+++..
T Consensus 199 ~~~~~-------------------------------~~~~~~~~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~~~~~~ 244 (719)
T 1z68_A 199 SYYGD-------------------------------EQYPRTINIPYPKAGAK---NPVVRIFIIDTTYPAYVGPQEVPV 244 (719)
T ss_dssp EECCS-------------------------------SSSCEEEEEECCBTTSC---CCEEEEEEEESSCHHHHCCEECCC
T ss_pred eccCC-------------------------------CCCccceeecCCCCCCC---CCeeEEEEEECCCCCccceeEccC
Confidence 32100 02223444555444431 01247999999988753
Q ss_pred -EEecCCCCCeEEEEEcCCCCCEEEEEeCC----CeEEEEE----cCCceeeEee----ccccCCeE-----EEEEcCCC
Q 001358 837 -LTIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYN----ARSSEVISKL----EGHSKRVT-----GLVFSDAL 898 (1092)
Q Consensus 837 -~~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~v~iwd----~~~~~~~~~l----~~h~~~V~-----~l~~spdg 898 (1092)
..+.+|...+..++||| |++++++.... ..|.+|| +.++++...+ .+|.+.+. .++|||||
T Consensus 245 ~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 245 PAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp CHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence 12335777899999999 78877775433 2588999 8888877666 46777776 89999999
Q ss_pred CEEEE--EeCCC--cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeC-----CcEEEEEcCC--
Q 001358 899 NILVS--SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAEE-- 966 (1092)
Q Consensus 899 ~~l~s--~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d-----~~v~lwd~~~-- 966 (1092)
+.|+. ...+| .|.+||+.+++.. .+. .+. ..+..+.++ +++.|+. +.+ +..++|.+..
T Consensus 324 ~~l~~~~~~~~g~~~l~~~~~~~~~~~---~lt--~~~----~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~ 393 (719)
T 1z68_A 324 ISYYKIFSDKDGYKHIHYIKDTVENAI---QIT--SGK----WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGS 393 (719)
T ss_dssp SCEEEEEECTTSCEEEEEESSCSTTCE---ECS--CSS----SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSS
T ss_pred CeEEEEEEccCCceEEEEEECCCCceE---ecc--cCc----eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCC
Confidence 96654 44555 4667777665421 121 121 146778888 8888877 443 6788887753
Q ss_pred cee-eeee---ccCCCcCEEEEEEecCCCEEEE-EeCC--CcEEEEECCCCceEEeec
Q 001358 967 LTC-LKQW---FPISSVPISQATFSCDCRMVFT-SFVD--GTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 967 ~~~-~~~~---~~~h~~~v~~l~fs~dg~~l~t-~s~D--g~i~vwd~~~~~~~~~~~ 1017 (1092)
+.. ...+ +.+|...+..+.|||||++++. ++.+ ..+.+||+.+++....+.
T Consensus 394 g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 394 YPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 421 1221 2236677889999999987774 4433 468999999887655443
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=5.8e-20 Score=220.42 Aligned_cols=272 Identities=12% Similarity=0.074 Sum_probs=197.9
Q ss_pred CCCceEEeecCCCceEEEEEcC-cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCC-CcEEEEEECCCCCEE
Q 001358 334 SSSPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLL 411 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~-d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~l 411 (1092)
..+|++++|||||++ ||+++. ||++.||++.+++... +..|. ..|..++|||| +.+
T Consensus 21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 447999999999995 666555 9999999997665443 44455 68999999999 777
Q ss_pred EEEeC---CCEEEEEEccC--CCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001358 412 GVAYS---KHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 412 as~~~---d~~i~iwd~~~--~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
++++. +....+|.+.. ..... .+..+. .+...+|+|||+.+++++++.++ +.+||+++++.......+.
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~- 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG- 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS-
T ss_pred EEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC-
Confidence 77765 44566665543 21111 222222 34467999999875666666555 4599999987765554333
Q ss_pred ceEEEeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358 487 PVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
.+++|+ +||++|++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. ++...|++||.
T Consensus 153 --~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 666664 578899988877 78999999887655 55667778899999999999995443 33458999999
Q ss_pred CCCeEEEEEeeccccCCceEEEE--------EcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001358 563 SEGAIKRTYQGLQLQHNSVSVVH--------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
.+++.. .+.++. ..+..+. |+|||..+++++.++++++|++ |+.... . ...+.+++|+ ++
T Consensus 226 ~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg 293 (582)
T 3o4h_A 226 RDGSVE-DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RG 293 (582)
T ss_dssp TTCCEE-ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TT
T ss_pred CCCcEE-EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CC
Confidence 999887 666654 4555556 9999988888999999999999 655441 1 1347789999 99
Q ss_pred CEEEEEeCCCe---EEEEECC
Q 001358 635 TLLAVIANENR---IKILETP 652 (1092)
Q Consensus 635 ~~l~~~~~dg~---i~iw~~~ 652 (1092)
+++++++.+.. +.+|+..
T Consensus 294 ~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 294 KLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTC
T ss_pred EEEEEEcCCCCCCeEEEEcCC
Confidence 99988887644 5666654
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=1.2e-19 Score=196.94 Aligned_cols=245 Identities=11% Similarity=0.075 Sum_probs=181.6
Q ss_pred cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCC-CCceeeeeeeeeecccccceeEEeeecCC-CCcEEE
Q 001358 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNR 401 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h-~~~V~~ 401 (1092)
......+..|...|.+++|+|||+ +|++++ ++.|.+||+.+ ++.... ..+| ...|.+
T Consensus 31 ~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~~~~~~~~~ 89 (297)
T 2ojh_A 31 TRKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV-------------------DTGFATICNND 89 (297)
T ss_dssp TTEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC-------------------CCTTCCCBCSC
T ss_pred CCceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe-------------------ccccccccccc
Confidence 334456667888999999999999 566665 78999999998 776542 3334 478899
Q ss_pred EEECCCCCEEEEEe--CCCEEEEE--EccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC-CCc
Q 001358 402 VVWSPDGSLLGVAY--SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGS 476 (1092)
Q Consensus 402 l~~spdg~~las~~--~d~~i~iw--d~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~ 476 (1092)
++|+|||++|++++ .++.+.|| +..++. .. .+..+. .+.+++|+||++. ++++++.|+.++||++. .+.
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~-~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKNL-PSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSSS-SEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTC
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecCC-CccceEECCCCCE-EEEEECCCCceEEEEEECCCC
Confidence 99999999999998 33445555 445543 21 333333 4889999999994 34478889999999853 233
Q ss_pred eeEEEecCCcceEEEeecccCCccEEEEEe-cCCeEEEEEcC-CCCceEEecCCCCceEEEEEecCCCEEEEEecCCC--
Q 001358 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-- 552 (1092)
Q Consensus 477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~-- 552 (1092)
....+..+...+.+++|++ ++.+|+.++ .++.+++|+++ .......+..+...+..++|+|+|++|++++.++.
T Consensus 164 ~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp CEEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred cceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence 4456677888899999954 667776665 59999999987 45556667777778999999999999998876432
Q ss_pred -----CceeEEEEeCCCCeEEEEE--eeccccCCceEEEEEcCCCCEEEEEeCCC
Q 001358 553 -----GESFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1092)
Q Consensus 553 -----~~~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 600 (1092)
....|++||+.+++..... .++. ..+..++|+|++++|++++.+.
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQ---GTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSCEEEEEEEEST---TTSCSCCBCTTSSEEEEEEECC
T ss_pred cccccCceEEEEEecCCCCceeeeccCCCC---cccccceECCCCCEEEEEEecc
Confidence 2467999999988764433 3555 6788899999999998877553
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=1.8e-18 Score=192.76 Aligned_cols=249 Identities=12% Similarity=0.145 Sum_probs=170.2
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCce--eeEEecCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcC
Q 001358 801 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR 874 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~ 874 (1092)
+...+..++|+|||+++++.. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345567899999999444443 3789999998765 4444455677889999999 888888887 78999999996
Q ss_pred C-c--eeeEeecc---------ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCceeeeeeeecCCCCcCCCCCceE
Q 001358 875 S-S--EVISKLEG---------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH 941 (1092)
Q Consensus 875 ~-~--~~~~~l~~---------h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 941 (1092)
. + +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 3 3 23333321 12348899999999977777778899999998 444332222222222 24678
Q ss_pred EEEecCCCEEEEE--eCCcEEEEEcCC--ceeeee-eccCC------CcCEEEEEEecCCCEE-EEEeCCCcEEEEECCC
Q 001358 942 IQFHKDQTRFLLV--HETHLAIYEAEE--LTCLKQ-WFPIS------SVPISQATFSCDCRMV-FTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 942 l~~s~dg~~la~~--~d~~v~lwd~~~--~~~~~~-~~~~h------~~~v~~l~fs~dg~~l-~t~s~Dg~i~vwd~~~ 1009 (1092)
++|+|||++|+++ .++.+.+|++.. ++.... ..... ...+..++|+|||++| ++...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999977774 467899999874 443211 11111 1458899999999987 4556689999999973
Q ss_pred C---ceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCC-CcEEEEecCCCCCc
Q 001358 1010 L---EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDT 1066 (1092)
Q Consensus 1010 ~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d-g~v~~w~~~~~~~~ 1066 (1092)
. ..+..+. .. . -.+..++|+| |+++|++++.+ +.|.+|++....++
T Consensus 272 ~g~~~~~~~~~------~~--~--~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 272 DGHLTLIQQIS------TE--G--DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp GGCEEEEEEEE------CS--S--SCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCcEEEeEEEe------cC--C--CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 3 2232222 10 1 2345789999 57877777754 89999987654443
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=4.7e-20 Score=227.62 Aligned_cols=279 Identities=14% Similarity=0.078 Sum_probs=197.4
Q ss_pred eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC---cEEEEEECCCCCEEEEE
Q 001358 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~~las~ 414 (1092)
..++|+|||+ +++++ .|++|++||+.+++.... +.+|.. .|.+++|||||++||++
T Consensus 19 ~~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~ 77 (719)
T 1z68_A 19 FFPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLE 77 (719)
T ss_dssp CCCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred CccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEE
Confidence 3789999996 66665 589999999999986643 223332 48899999999999998
Q ss_pred eC---------CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecC
Q 001358 415 YS---------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH 484 (1092)
Q Consensus 415 ~~---------d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~ 484 (1092)
+. ++.|++||+.+++.+... .+ ...+.+++|||||+ .|+.+. ++.|++||+.+++..+.. .++
T Consensus 78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~ 150 (719)
T 1z68_A 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGR 150 (719)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred ecCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence 76 689999999998652100 12 35688999999999 566665 789999999988765432 233
Q ss_pred Ccce-----------------EEEeecccCCccEEEEEecCC----------------------------------eEEE
Q 001358 485 GAPV-----------------YSLCPHAKENIHFIFSISVDG----------------------------------KIKA 513 (1092)
Q Consensus 485 ~~~v-----------------~~i~~~~~~~~~~l~s~~~dg----------------------------------~i~v 513 (1092)
...| .+++| ++||++|++++.|. .|++
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 2222 36777 56888999887652 7889
Q ss_pred EEcCCCCce--EE------ecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEe----CCCCeEEEEE----eecccc
Q 001358 514 WLYDSLGAR--VD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN----ESEGAIKRTY----QGLQLQ 577 (1092)
Q Consensus 514 wd~~~~~~~--~~------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~ 577 (1092)
||+.++... .. +..+...+..++|+||++.+++..........|++|| ..+++....+ .++.
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~-- 306 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT-- 306 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS--
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC--
Confidence 999876642 12 2346667899999999887776544334456799999 8888776655 3444
Q ss_pred CCceE-----EEEEcCCCCEEEE--EeCCC--eEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-----
Q 001358 578 HNSVS-----VVHFDTAKDQILA--AGDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----- 643 (1092)
Q Consensus 578 ~~~v~-----~~~~~~~~~~l~~--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----- 643 (1092)
..+. .+.|+|+|+.++. ...+| .|++||+.+++. ..+..+ ...+..+.++ +++.++..+.+
T Consensus 307 -~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~ 381 (719)
T 1z68_A 307 -GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYP 381 (719)
T ss_dssp -SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred -ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccC--ceEEEEEEEE-eCCEEEEEEecCCCCC
Confidence 4454 7889999997655 33455 577778877763 334322 2235667777 88887777765
Q ss_pred CeEEEEECCC
Q 001358 644 NRIKILETPE 653 (1092)
Q Consensus 644 g~i~iw~~~~ 653 (1092)
+..++|.+..
T Consensus 382 ~~~~l~~~~~ 391 (719)
T 1z68_A 382 GRRNIYRISI 391 (719)
T ss_dssp TCBEEEEEEC
T ss_pred ceEEEEEEeC
Confidence 7888887754
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=9.6e-19 Score=194.92 Aligned_cols=277 Identities=12% Similarity=0.098 Sum_probs=183.3
Q ss_pred ccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeec---CCeeEEeeecCCccccCcccccccCCccc
Q 001358 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS---NGVHLMWRWPRNDLTLSTEATTKVPPRLY 783 (1092)
Q Consensus 707 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~---dg~i~lw~~~~~~~~~~~~~~~~~~~~~~ 783 (1092)
++.+.+|+++..... ...+. ...+...+..++|+|+|+ +++++. ++.+.+|++.....
T Consensus 15 ~~~i~v~~~d~~tg~-~~~~~--~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~--------------- 75 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKT-LTNDG--LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA--------------- 75 (347)
T ss_dssp CCEEEEEEEETTTTE-EEEEE--EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE---------------
T ss_pred CCCEEEEEEcCCCCe-EEEee--eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE---------------
Confidence 456778887642221 11111 112345667899999999 666654 58999998754321
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcC-C--ceeeEEecCC---------CCCeEEE
Q 001358 784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVM-T--FKTILTIMPP---------SPTATSL 849 (1092)
Q Consensus 784 ~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~-~--~~~~~~~~~~---------~~~i~~l 849 (1092)
.....+. .+...+..++|+|||++|++++ ++.+.+|++. + .+.+..+... ...+.++
T Consensus 76 -------~~~~~~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~ 146 (347)
T 3hfq_A 76 -------HKLNTVV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYT 146 (347)
T ss_dssp -------EEEEEEE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEE
T ss_pred -------EEeeeee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEE
Confidence 0000000 1455678999999999888887 5889999996 2 3333333221 2348899
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEcC-Cceee--Eeeccc-cCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCC--Cceee
Q 001358 850 AFNPHDNNVIAIGMDDSTILIYNAR-SSEVI--SKLEGH-SKRVTGLVFSDALNILVS-SGGDAQIFVWDVDG--WGIQT 922 (1092)
Q Consensus 850 ~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~--~~l~~h-~~~V~~l~~spdg~~l~s-~s~Dg~i~iwd~~~--~~~~~ 922 (1092)
+|+| +++++++...++.|++|++. +++.. ..+..+ ...+..++|+|||++|++ ...++.|.+|+++. ++...
T Consensus 147 ~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 147 DLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp EECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence 9999 77777777778999999998 55432 222222 336788999999996665 55788999999885 44332
Q ss_pred eeeeecCCCCcCCCCCceEEEEecCCCEEEE-E-eCCcEEEEEcCC-c--eeeeeeccCCCcCEEEEEEecCCCEEEEEe
Q 001358 923 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEE-L--TCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 923 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~d~~v~lwd~~~-~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s 997 (1092)
...+............+..++|+|||++|++ . .++.|.+|++.. + +.+.. ...+...+..++|+|||++|++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ-ISTEGDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE-EECSSSCCCEEEECTTSSEEEEEE
T ss_pred eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE-EecCCCCcCeEEECCCCCEEEEEE
Confidence 2233332222111124788999999998865 3 478999999973 2 33333 334566788999999999998887
Q ss_pred CC-CcEEEE--ECCCCceE
Q 001358 998 VD-GTLSIH--EASNLEVQ 1013 (1092)
Q Consensus 998 ~D-g~i~vw--d~~~~~~~ 1013 (1092)
.+ +.|.+| |..+|++.
T Consensus 305 ~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 305 QNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp TTTTEEEEEEECTTTCCEE
T ss_pred cCCCcEEEEEEeCCCCeEE
Confidence 65 899999 55567665
No 154
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=6.1e-19 Score=200.06 Aligned_cols=309 Identities=10% Similarity=0.015 Sum_probs=203.0
Q ss_pred cccCCCcceeEecccCCCCceE-----EeecCCCceEEEEEcCcC--cEEEEecCCCCceeeeeeeeeecccccceeEEe
Q 001358 318 SFSDFPKTVAQTLIEGSSSPMS-----MDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390 (1092)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~-----v~~spdg~~llasg~~d~--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 390 (1092)
+++.........|..|...+.. .+|||||++++.++..++ .|.+||+.+++....
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------------ 75 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------------ 75 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------------
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------------
Confidence 4444445667778888766666 899999996555544466 488889988876542
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEE--EeeCCCCcEEEEEE-------
Q 001358 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL--AFSAPCKQISVITC------- 461 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~--~~s~d~~~l~l~s~------- 461 (1092)
..+|...+..++|||||++|++++.++.|++||+.+++... ....+...+... .++||++ .++..
T Consensus 76 -t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~ 149 (388)
T 3pe7_A 76 -TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDW 149 (388)
T ss_dssp -CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGC
T ss_pred -eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCccc
Confidence 34455555578899999999999999999999999986443 233444444433 3489998 45432
Q ss_pred ---------------eCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecC------CeEEEEEcCCCC
Q 001358 462 ---------------GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLG 520 (1092)
Q Consensus 462 ---------------~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~ 520 (1092)
+.+..|.+||+.+++.. .+..+...+..+.|+|. |++.|+....+ ..|.++|.....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 24468999999998754 44456677888888541 66777777653 367777776654
Q ss_pred ceEEecCCC-CceEEEEEecCCCEEEEEecCC-CCceeEEEEeCCCCeEEEE--EeeccccCCceEEEEEcCCCCEEEEE
Q 001358 521 ARVDYDAPG-LGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAA 596 (1092)
Q Consensus 521 ~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~ 596 (1092)
......... ..+..++|+|||+.|+..+... .....|++||+.+++.... +.++...........|+|+|+.++..
T Consensus 228 ~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~ 307 (388)
T 3pe7_A 228 MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD 307 (388)
T ss_dssp CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence 443333222 3577889999999887665432 2234599999999875433 22210000001123689999988754
Q ss_pred ---------eCCCeEEEEECCCCceEEEEeCCCCCC--------CCceEEEccCCCEEEEEeC-CCeEEEEECC
Q 001358 597 ---------GDDHVIKIWDMNKVQLLTTIDAGGGLP--------ENPRICFNKNGTLLAVIAN-ENRIKILETP 652 (1092)
Q Consensus 597 ---------s~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~ 652 (1092)
..+..|++||+.+++............ .+..++|+|||+.|+..+. +|...||.+.
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 308 VQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ---------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred eeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 456789999999887644433322100 3678899999998887765 5666666543
No 155
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=6.7e-19 Score=216.89 Aligned_cols=279 Identities=14% Similarity=0.119 Sum_probs=186.9
Q ss_pred CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC-----cEEEEEECCCCC
Q 001358 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGS 409 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~-----~V~~l~~spdg~ 409 (1092)
.....++|+|||+ +++++ |++|++||+.+|+.... +.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCC
Confidence 3567899999997 67776 89999999999986543 444543 234488999999
Q ss_pred EEEEEeCC---------CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358 410 LLGVAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 410 ~las~~~d---------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+|++++.+ +.+.+||+.+++... +..|.+.+...+|||||+ .|+.+. |+.|++||+.+++..+.
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEE
Confidence 99999876 567799999986443 567788899999999999 466654 78999999988875542
Q ss_pred -EecCCcce-----------------EEEeecccCCccEEEEEecCCe-EEEEEcCCCCceEEecCCCCceEEEEEecCC
Q 001358 481 -FEGHGAPV-----------------YSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1092)
Q Consensus 481 -~~~~~~~v-----------------~~i~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg 541 (1092)
..++...+ ..+.| ++||+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 22332222 23556 668889988876655 8888764221110 123355667777776
Q ss_pred CEEEEEecCCCCceeEEEEeCCC---Ce--EEEEEeecc---ccCCceEEEEEcCCCCEEEEEe----CCCeEEEEECCC
Q 001358 542 RRLFSCGTSKEGESFLVEWNESE---GA--IKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNK 609 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~---~~--~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~ 609 (1092)
.. .....|++||+.+ ++ ....+.... .+...+..++|+||++.++... .+..|++||+.+
T Consensus 223 ~~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 223 AV--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp SC--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred Cc--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 43 1244699999998 73 222332200 1236789999999998766643 234799999998
Q ss_pred Cc----eE--EEE--eCCCCCCC---CceEEEccCCCEEE-EEeC-C--CeEEEEECCCCC
Q 001358 610 VQ----LL--TTI--DAGGGLPE---NPRICFNKNGTLLA-VIAN-E--NRIKILETPESN 655 (1092)
Q Consensus 610 ~~----~~--~~~--~~~~~~~~---v~~v~~s~~~~~l~-~~~~-d--g~i~iw~~~~~~ 655 (1092)
++ +. ..+ ..+..... ...++|+|||+.++ ..+. + ..|++|+..++.
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 87 11 111 22221111 23789999999887 6654 3 457777776543
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=1.2e-17 Score=187.07 Aligned_cols=300 Identities=13% Similarity=0.126 Sum_probs=195.9
Q ss_pred ecCCCceEEEEEc----CcCcEEEEec--CCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358 342 FHPVQHTLLLVGT----NVGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 342 ~spdg~~llasg~----~d~~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
..+... .+.+|+ .++.|.+|++ .+|+..... .. +...+..++|+|||++|++++
T Consensus 9 ~~~~~~-~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~~~ 68 (361)
T 3scy_A 9 TTDSEL-TMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYSVN 68 (361)
T ss_dssp GGGGEE-EEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEEEE
T ss_pred hCCCce-EEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEEEE
Confidence 344443 455554 3567888876 445443210 11 567788899999999999998
Q ss_pred CC----CEEEEEEccCC-CCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE------ec-
Q 001358 416 SK----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF------EG- 483 (1092)
Q Consensus 416 ~d----~~i~iwd~~~~-~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~------~~- 483 (1092)
.+ +.|.+|++... ..+........+......+++ +++. ++++...++.|.+|++.+...+..+ .+
T Consensus 69 ~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 145 (361)
T 3scy_A 69 EFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGS 145 (361)
T ss_dssp CCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred ccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence 75 79999998763 223333344445556777787 7773 3444457889999999754333211 11
Q ss_pred -------CCcceEEEeecccCCccEEEEEe-cCCeEEEEEcCCCCc------e-------EEecCCCCceEEEEEecCCC
Q 001358 484 -------HGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA------R-------VDYDAPGLGCTRMAYSANGR 542 (1092)
Q Consensus 484 -------~~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~------~-------~~~~~~~~~i~~~~~s~dg~ 542 (1092)
+...+.+++|+ ++++++++++ .++.|++|+++.... . ............++|+|||+
T Consensus 146 ~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~ 223 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK 223 (361)
T ss_dssp CSCTTTCSSCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred CCCccccCCCcceEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC
Confidence 12234667884 5777665544 589999999886542 1 22233445678999999999
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeC--CCeEEEEECC--CCc--eEE
Q 001358 543 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMN--KVQ--LLT 614 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~--~~~--~~~ 614 (1092)
+++++.. .++.|.+|++.+++.. ..+.....+......++|+|++++++++.. ++.|.+|++. +++ .+.
T Consensus 224 ~l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~ 300 (361)
T 3scy_A 224 FAYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVG 300 (361)
T ss_dssp EEEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEE
T ss_pred EEEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEee
Confidence 8887763 2567999999877653 333332222245689999999999977665 4899999985 455 344
Q ss_pred EEeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECC--CCCeeeec-ccccccceeeee
Q 001358 615 TIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETP--ESNSVDAA-GVLSDNLRKLSV 672 (1092)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~--~~~~~~~~-~~~~~~v~~~~~ 672 (1092)
.+.. ...+..++|+|+|++|++++ .++.|.+|++. +++..... ..+.....|+.|
T Consensus 301 ~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 301 YQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred EecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 4443 23478999999999998887 57899996554 55544333 223344555554
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=1.4e-17 Score=186.59 Aligned_cols=312 Identities=10% Similarity=0.093 Sum_probs=195.2
Q ss_pred cCCCEEEEEecCCCCceeEEEEeC--CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC----CeEEEEECCC--C
Q 001358 539 ANGRRLFSCGTSKEGESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNK--V 610 (1092)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~--~ 610 (1092)
+...+++.++.....+..|++|.+ .+++.......+ ...+..++|+|++++|++++.+ +.|.+|++.. +
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~---~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g 87 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE---VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG 87 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE---CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc---CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence 334456666544334556777754 667654443333 3677889999999999998875 7999998765 4
Q ss_pred ceEEEEeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCcee
Q 001358 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 689 (1092)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 689 (1092)
+................+++ +++++++++ .++.+.+|++.....+.....
T Consensus 88 ~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~--------------------------- 138 (361)
T 3scy_A 88 TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD--------------------------- 138 (361)
T ss_dssp EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE---------------------------
T ss_pred cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce---------------------------
Confidence 43222221111223456666 788777776 578999999864322111100
Q ss_pred ecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccc
Q 001358 690 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT 769 (1092)
Q Consensus 690 ~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~ 769 (1092)
.+.....+.
T Consensus 139 -------------------------------------------------~~~~~g~~~---------------------- 147 (361)
T 3scy_A 139 -------------------------------------------------VIEFKGSGP---------------------- 147 (361)
T ss_dssp -------------------------------------------------EEECCCCCS----------------------
T ss_pred -------------------------------------------------eEEccCCCC----------------------
Confidence 000000000
Q ss_pred cCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCcee------------
Q 001358 770 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------ 835 (1092)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~------------ 835 (1092)
. +...+...+.+++|+|||+++++++ ++.+.+|++.....
T Consensus 148 ----------------~----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~ 201 (361)
T 3scy_A 148 ----------------D----------KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT 201 (361)
T ss_dssp ----------------C----------TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred ----------------C----------ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence 0 0001233466788888888666655 47788887764331
Q ss_pred -eEEecCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCCcee--eEee---ccccCCeEEEEEcCCCCEEEEEeCC-
Q 001358 836 -ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV--ISKL---EGHSKRVTGLVFSDALNILVSSGGD- 907 (1092)
Q Consensus 836 -~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~--~~~l---~~h~~~V~~l~~spdg~~l~s~s~D- 907 (1092)
......+......++|+| |+++|++++ .++.|.+|++.+++. +..+ ..+...+..++|+|||++|+++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 202 PEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp EEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred ccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence 112223455678999999 888887777 689999999987754 2222 3344567899999999998766654
Q ss_pred -CcEEEEEcC--CCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCCcEEEEEc--CCceeeeeeccCCCcC
Q 001358 908 -AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEA--EELTCLKQWFPISSVP 980 (1092)
Q Consensus 908 -g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~v~lwd~--~~~~~~~~~~~~h~~~ 980 (1092)
+.|.+|+++ +++......+.. + ..+..++|+|||++|+++ .++.|.+|++ .+++........+...
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~ 353 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDK 353 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSS
T ss_pred CCEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCC
Confidence 889999996 344322222222 1 247799999999998885 4678999655 4676654422334567
Q ss_pred EEEEEEe
Q 001358 981 ISQATFS 987 (1092)
Q Consensus 981 v~~l~fs 987 (1092)
+.|+.|.
T Consensus 354 p~~v~~~ 360 (361)
T 3scy_A 354 PVCLKFV 360 (361)
T ss_dssp EEEEEEE
T ss_pred CeEEEEc
Confidence 8999886
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=2.5e-19 Score=204.29 Aligned_cols=272 Identities=13% Similarity=0.105 Sum_probs=188.5
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce----------eeEE-----ecCCCCCeEEEEEcCCCCCEEE----EE
Q 001358 802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFK----------TILT-----IMPPSPTATSLAFNPHDNNVIA----IG 862 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~----------~~~~-----~~~~~~~i~~l~~s~~d~~~la----sg 862 (1092)
...+..+++++++.++++++.+.+++|+..... .+.. ...+...|.+++|+| ++++|| +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEecc
Confidence 345788999999999999986559998864211 0111 112456799999999 899999 78
Q ss_pred eCCCeEEEEEcCCc--------e---eeEeeccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001358 863 MDDSTILIYNARSS--------E---VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 930 (1092)
Q Consensus 863 ~~dg~v~iwd~~~~--------~---~~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 930 (1092)
+.|+.|+|||+.++ + .+..+.+|.+.|.+++|+|+ +++|++++.||+|++||+.++.. .....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-----~~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-----VCATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-----EEEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-----eeecc
Confidence 89999999999765 2 24566789999999999998 89999999999999999998632 11122
Q ss_pred CCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeecc------CCCcCEEEEEEecCCCEEEE-EeCCCc-
Q 001358 931 GVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFT-SFVDGT- 1001 (1092)
Q Consensus 931 ~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t-~s~Dg~- 1001 (1092)
++.. .|.+++|+|+|++|++ +.|+.|++||.+ ++....+.. .|...|.+++|++++.++++ ++.||.
T Consensus 190 ~~~~---~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 190 PSTV---AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp CGGG---CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred CCCC---ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 2332 6999999999999999 578999999998 444433211 23448999999999988765 334433
Q ss_pred -----EEEEECCCCce-----EEeeccccccCCCCccCcccceEEEECCCCCCEEEEEe-CCCcEEEEecCCCCCccccC
Q 001358 1002 -----LSIHEASNLEV-----QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL-TNGEVYVIEPNEPGDTWAVL 1070 (1092)
Q Consensus 1002 -----i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~-~dg~v~~w~~~~~~~~~~~~ 1070 (1092)
+++|++..... ...+....+.... .....+.+.+-++ .+++++++ ..+.|.+......++.|...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~l~d-w~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCT---ERQHHYYLSYIEE-WDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCS---SSCCCEEEEEEGG-GTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCCCCCC---CcCcceeeehhcc-CCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 89999986532 1111111110011 1111122444353 45555444 45679999988777779888
Q ss_pred CCCCcccCCCCCCcccc
Q 001358 1071 PPDEIVGDQPTSTSEGD 1087 (1092)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~ 1087 (1092)
...|..+++.+.+.+++
T Consensus 342 ~~~d~~ra~lP~~~~~~ 358 (434)
T 2oit_A 342 LLEDSSRAELPVTDKSD 358 (434)
T ss_dssp EECGGGCCBCCBCTTSC
T ss_pred eccccccccccCCCCCC
Confidence 78787777777665543
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=3.7e-18 Score=190.38 Aligned_cols=283 Identities=11% Similarity=0.060 Sum_probs=194.6
Q ss_pred eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE-eC
Q 001358 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YS 416 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~ 416 (1092)
+.++++++++ ++++++.+++|.+||+.+++.+..... +....+..++|+|||++++++ ..
T Consensus 3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVM------------------PDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEEC------------------SSCCSSCEEEECTTSSEEEEEETT
T ss_pred ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEec------------------CCCCCCceeEECCCCCEEEEEeCC
Confidence 3567888887 788989999999999999877654211 122257889999999976554 56
Q ss_pred CCEEEEEEccCCCCccceEEec-cc-----ccceeEEEeeCCCCcEEEEEEeCC------------CcEEEEECCCCce-
Q 001358 417 KHIVQLYAYHGGSDARQQLEID-AH-----VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSR- 477 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~l~-~h-----~~~v~~~~~s~d~~~l~l~s~~~d------------~~i~vwd~~~~~~- 477 (1092)
++.|.+||+.+++... .+. .+ ...+.+++|+|||+ .+++++.+ +.|.+||+.+++.
T Consensus 64 ~~~i~~~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 8899999999886544 222 22 23478999999999 56666654 8999999998543
Q ss_pred --eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC------------------------c
Q 001358 478 --TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL------------------------G 531 (1092)
Q Consensus 478 --~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------------------------~ 531 (1092)
+..+. +...+.+++|++ +++ +++++ +.|.+||..+++....+..... .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 34444 334577788854 666 55544 3499999988876665543320 2
Q ss_pred eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEE-EeeccccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 001358 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNK 609 (1092)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~ 609 (1092)
...+++++++........ ....+..+|..+++.... +... ...+..++|+| ++++++++ ++.|.+||+.+
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~ 284 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADL---TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ 284 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEEC---SSCEEEEEECSSCTTEEEEE--ESEEEEEETTT
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccC---CCcceeeEecCCCCCEEEEE--cCeEEEEECcc
Confidence 344666665532211110 011233366666553221 1122 35788999999 99999888 88999999999
Q ss_pred CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecc
Q 001358 610 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
++.+..+.... .+..++|+|+|++|++++.++.|.+||..+++.+..+.
T Consensus 285 ~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 285 RKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp TEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 99888887543 36789999999999988889999999999887776654
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=7.2e-18 Score=207.68 Aligned_cols=379 Identities=12% Similarity=0.034 Sum_probs=241.3
Q ss_pred eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce--EEEEEcCCCCEEEEEeCC---------C
Q 001358 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGDD---------H 600 (1092)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~d---------g 600 (1092)
..++.|+|||+++++. ++.|++||..+++....+.++......+ ..+.|+|||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999988875 4469999999999888888776322223 448899999999998876 5
Q ss_pred eEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecc-cccccceeeeecCCcccc
Q 001358 601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVT 679 (1092)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 679 (1092)
.+.+||+.+++... +.. +...+..++|||||+.||.+. ++.|++|+..++...+... ++...
T Consensus 93 ~~~~~d~~~~~~~~-l~~--~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~------------- 155 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EER--IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI------------- 155 (740)
T ss_dssp EEEEEETTTTEECC-SSC--CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------
T ss_pred EEEEEECCCCcEEE-ccc--CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc-------------
Confidence 67799999987643 322 223578999999999999885 5899999998765432211 00000
Q ss_pred cccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC-Cee
Q 001358 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVH 758 (1092)
Q Consensus 680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i 758 (1092)
+..+.. --+|+-+ -......+.|||||+.|+.+..| +.+
T Consensus 156 ---------------------~~~g~~---~~v~~ee----------------~~~~~~~~~wSpDg~~la~~~~d~~~v 195 (740)
T 4a5s_A 156 ---------------------IYNGIT---DWVYEEE----------------VFSAYSALWWSPNGTFLAYAQFNDTEV 195 (740)
T ss_dssp ---------------------EEESBC---CHHHHHH----------------TSSSSBCEEECTTSSEEEEEEEECTTC
T ss_pred ---------------------eecCcc---cccccch----------------hcCCCcceEECCCCCEEEEEEEcccCC
Confidence 000000 0000000 01223457899999999988766 447
Q ss_pred EEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCC---ce-
Q 001358 759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT---FK- 834 (1092)
Q Consensus 759 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~---~~- 834 (1092)
.+|.+..... .. .+...+..+.+.+.|..- ...+|++||+.+ ++
T Consensus 196 ~~~~~~~~~~-----------------~~------------~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 196 PLIEYSFYSD-----------------ES------------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp CEEEEEECCS-----------------TT------------CSSCEEEEEECCBTTSCC---CEEEEEEEETTSCCSSSC
T ss_pred ceEEEEeecC-----------------CC------------CCCCcceeecCCCCcCcC---CeeEEEEEECCCCCCCCc
Confidence 8877643210 00 133445666776666421 123689999998 73
Q ss_pred -eeEEec------CCCCCeEEEEEcCCCCCEEEEEeC----CCeEEEEEcCCce----ee--Eee--ccccCCeE-----
Q 001358 835 -TILTIM------PPSPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSE----VI--SKL--EGHSKRVT----- 890 (1092)
Q Consensus 835 -~~~~~~------~~~~~i~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~----~~--~~l--~~h~~~V~----- 890 (1092)
....+. ++...+..++|+| |+++++.... +..|++||+.+++ +. ..+ .+|...|.
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~ 322 (740)
T 4a5s_A 244 ATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS 322 (740)
T ss_dssp CCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred ceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCC
Confidence 233343 3677899999999 8886665543 3379999999987 32 222 44665554
Q ss_pred EEEEcCCCCEEE-EEeC-C--CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeC-----C--c
Q 001358 891 GLVFSDALNILV-SSGG-D--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----T--H 958 (1092)
Q Consensus 891 ~l~~spdg~~l~-s~s~-D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d-----~--~ 958 (1092)
.++|||||+.|+ ..+. + ..|.+||+.+++.. +...+.. .+..+. ++|++.|+. +.. + .
T Consensus 323 ~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~~----~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ 392 (740)
T 4a5s_A 323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGTW----EVIGIE-ALTSDYLYYISNEYKGMPGGRN 392 (740)
T ss_dssp CCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSSS----CEEEEE-EECSSEEEEEESCGGGCTTCBE
T ss_pred CceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCCE----EEEEEE-EEeCCEEEEEEecCCCCCceeE
Confidence 789999999887 6654 3 45888898875522 2223322 244443 355777766 433 2 3
Q ss_pred EEEEEcCCceeeeeec---cCCCcCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceEEee
Q 001358 959 LAIYEAEELTCLKQWF---PISSVPISQATFSCDCRMVFTSFVD---GTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 959 v~lwd~~~~~~~~~~~---~~h~~~v~~l~fs~dg~~l~t~s~D---g~i~vwd~~~~~~~~~~ 1016 (1092)
|+..++..+.....+. .+....+..+.|||||++++..... ..+.+++..+++....+
T Consensus 393 ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l 456 (740)
T 4a5s_A 393 LYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL 456 (740)
T ss_dssp EEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 5555555444322222 1234678899999999987755443 36888898888765444
No 161
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=1.4e-18 Score=198.19 Aligned_cols=221 Identities=12% Similarity=0.038 Sum_probs=160.4
Q ss_pred CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE-
Q 001358 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG- 412 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la- 412 (1092)
...+..+++++++. ++++|+.++ ++||+...-...... -.+.. ....+.......|...|.+++|+|||++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKP---GDDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCT---TCCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhccc---ccCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34789999999998 677887777 899886421110000 00000 000000001224677899999999999999
Q ss_pred ---EEeCCCEEEEEEccCC--------CCccceEEecccccceeEEEeeCC-CCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358 413 ---VAYSKHIVQLYAYHGG--------SDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 413 ---s~~~d~~i~iwd~~~~--------~~~~~~~~l~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||++++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7788999999999865 222334456789999999999998 56 899999999999999999988777
Q ss_pred EecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCceEEEEEecCCCEEEEEecCC--
Q 001358 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK-- 551 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~~~-- 551 (1092)
..+|...|.+++|++ +|.+|++|+.||+|++||.+ ......+..+ ...+.+++|++++.++++.....
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 788999999999965 67899999999999999998 4444444332 23789999999998887654321
Q ss_pred -CCceeEEEEeCCCC
Q 001358 552 -EGESFLVEWNESEG 565 (1092)
Q Consensus 552 -~~~~~i~iwd~~~~ 565 (1092)
+....+++|++...
T Consensus 265 ~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 265 LETSPDVVMALLPKK 279 (434)
T ss_dssp SSSCCEEEEEECCCT
T ss_pred cCCCCceEEEEeccC
Confidence 11234889998754
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=1.2e-18 Score=209.01 Aligned_cols=236 Identities=16% Similarity=0.168 Sum_probs=175.5
Q ss_pred CCcEEEEEECCCCCEEEEEeC-CCEEEEEEccCCCCccceEEecccc-cceeEEEeeCCCCcEEEEEEeC---CCcEEEE
Q 001358 396 GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---DKTIKVW 470 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~-d~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~l~l~s~~~---d~~i~vw 470 (1092)
..+|.+++|||||++||+++. ||++.||++.+++.. .+..|. ..+..++|+|| + ++++++. +....+|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 457999999999999999887 999999999776432 344555 68999999999 5 6776664 4555665
Q ss_pred ECCC---CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEE
Q 001358 471 DAVT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 471 d~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
.+.. +... .+..+. .+...+|++++++..+++++.++.. +||+.+++.......+. .+++|+|||++|+++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5432 3322 333222 3445677777665566666555554 99998876554443332 788999999999988
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCceEEEEeCCCCCCCC
Q 001358 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
+.+..+...|++||+.+++.. .+..+. ..+..++|+|||+.|+++..++ .|++||+.+++.. .+..+ ...+
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~ 240 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDF 240 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcCh
Confidence 765444477999999988865 555555 7789999999999999888888 8999999998877 44433 2335
Q ss_pred ceEE--------EccCCCEEEEEeCCCeEEEEEC
Q 001358 626 PRIC--------FNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 626 ~~v~--------~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
..++ |+|||.++++++.++.+++|++
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 5666 9999999999999999999998
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=4.6e-18 Score=192.76 Aligned_cols=256 Identities=11% Similarity=0.027 Sum_probs=178.5
Q ss_pred ecCCCCcEEE-----EEECCCCCEEEEEeC-CC--EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC
Q 001358 392 VRDPGVSVNR-----VVWSPDGSLLGVAYS-KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1092)
Q Consensus 392 l~~h~~~V~~-----l~~spdg~~las~~~-d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~ 463 (1092)
++.|...+.. .+|||||++||+++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 6667766666 899999999999987 66 48888998876443 2345555566788999999 7888888
Q ss_pred CCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe----------------------cCCeEEEEEcCCCCc
Q 001358 464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------------------VDGKIKAWLYDSLGA 521 (1092)
Q Consensus 464 d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----------------------~dg~i~vwd~~~~~~ 521 (1092)
++.|++||+.+++....+..+...+....+..++++.+++... .++.|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8999999999998877777777666655555567888877432 346799999988754
Q ss_pred eEEecCCCCceEEEEEec-CCCEEEEEecCCC--CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC
Q 001358 522 RVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1092)
Q Consensus 522 ~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 598 (1092)
.. +..+...+..++|+| ||+.|+.+..... ....|+++|..++.......... ...+....|+|||+.|+..+.
T Consensus 181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE--GESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT--TEEEEEEEECTTSSCEEEEEE
T ss_pred EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC--CcccccceECCCCCEEEEEec
Confidence 43 334455788999999 9999988775321 14468899987665443332221 124778899999998866442
Q ss_pred -C----CeEEEEECCCCceEEEEeCCCC--C-CCCceEEEccCCCEEEEE---------eCCCeEEEEECCCCC
Q 001358 599 -D----HVIKIWDMNKVQLLTTIDAGGG--L-PENPRICFNKNGTLLAVI---------ANENRIKILETPESN 655 (1092)
Q Consensus 599 -d----g~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~~~~l~~~---------~~dg~i~iw~~~~~~ 655 (1092)
+ +.|++||+.+++.......... . ......+|+|||+.|+.. ..+..|++|++.+++
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 2 2399999999875443322210 0 012334799999988864 445689999988764
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=2e-17 Score=184.36 Aligned_cols=297 Identities=9% Similarity=0.015 Sum_probs=197.9
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001358 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
..++.++++++.++.|.+||+.+++....+..+. ..+..++|+|+|++++++.. .++.|++||+.+++.+..+...
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESC
T ss_pred cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcc
Confidence 4567889999999999999999887766665443 25678999999998776552 3567999999999988777642
Q ss_pred ccc---CCceEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCce---EEEEeCCCCCCCCceEEEccCCCE
Q 001358 575 QLQ---HNSVSVVHFDTAKDQILAAGDD------------HVIKIWDMNKVQL---LTTIDAGGGLPENPRICFNKNGTL 636 (1092)
Q Consensus 575 ~~~---~~~v~~~~~~~~~~~l~~~s~d------------g~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1092)
... ...+..++|+|+++++++++.+ +.|.+||+.+++. +.....+ ..+.+++|+|+|+
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP---RQVYLMRAADDGS- 160 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC---SSCCCEEECTTSC-
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC---CcccceeECCCCc-
Confidence 200 1236788999999999998865 8999999988543 3344433 2478899999999
Q ss_pred EEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceecee
Q 001358 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1092)
+++++ +.|.+||..+++....+........ .+. .+ ..+.+|...
T Consensus 161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~--~~~---------------------~~-----------~~~~~~~~~ 204 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRK--GYS---------------------AP-----------DVLYFWPHQ 204 (349)
T ss_dssp EEEES--SSEEEECTTTCCEEEEECSTTCCCT--TBC---------------------CC-----------BCCCCCCCC
T ss_pred EEEcc--CcEEEEeCCCCceeccccccccCCc--ccc---------------------Cc-----------cceeeecCC
Confidence 55554 3499999988876654432110000 000 00 112222211
Q ss_pred eccCccceecccCCccccccEEEEEEecCCcEEE-----------EeecCCeeEEeeecCCccccCcccccccCCccccC
Q 001358 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-----------ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 785 (1092)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-----------~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1092)
... ........+++++++.... ....++.+.+|++.
T Consensus 205 ~~~------------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 251 (349)
T 1jmx_B 205 SPR------------HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA--------------------- 251 (349)
T ss_dssp CTT------------CEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE---------------------
T ss_pred Ccc------------eeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc---------------------
Confidence 000 0001223455555442211 11222333333321
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEEec-CCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeC
Q 001358 786 RHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 864 (1092)
Q Consensus 786 ~~~~~~~~~~l~~~~~~~~v~~~~~s~-dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~ 864 (1092)
.+...+..++++| ||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|++++.
T Consensus 252 --------------~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~ 314 (349)
T 1jmx_B 252 --------------DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGT 314 (349)
T ss_dssp --------------ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESB
T ss_pred --------------cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecC
Confidence 1345678999999 99999988 88999999999998887763 34577999999 8888888888
Q ss_pred CCeEEEEEcCCceeeEeeccc
Q 001358 865 DSTILIYNARSSEVISKLEGH 885 (1092)
Q Consensus 865 dg~v~iwd~~~~~~~~~l~~h 885 (1092)
++.|.+||..+++.+..+..+
T Consensus 315 ~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 315 FNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SSEEEEEETTTTEEEEEEECS
T ss_pred CCeEEEEeccccceeeeeecC
Confidence 999999999999988877644
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=3.8e-17 Score=182.98 Aligned_cols=249 Identities=9% Similarity=0.104 Sum_probs=169.2
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcC-CceeeEEecC-CCCCeEEEEEcCCCCCE--EEEEe-------------CC
Q 001358 803 EAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHDNNV--IAIGM-------------DD 865 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~s~~d~~~--lasg~-------------~d 865 (1092)
..+..++|+|||++|++++.+.|.+|++. +++....... ..+...+++|+| ++++ ++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 45778999999999988875599999997 7776543321 112356789999 8884 55553 68
Q ss_pred CeEEEEEcC-CceeeEeec----cccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcC-CCceeeeeeeecCCCCcCCCCC
Q 001358 866 STILIYNAR-SSEVISKLE----GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPS 938 (1092)
Q Consensus 866 g~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 938 (1092)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|++. +++......+.... + ...
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~---g~~ 194 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-P---GDH 194 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-T---TCC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-C---CCC
Confidence 999999997 466544443 25567999999999998887764 6789999998 66543222222111 0 125
Q ss_pred ceEEEEecCCCEEEEEe--CCcEEEEEcC--Cceeee---ee--cc----CCCc------CEEEEE-EecCCCEEEEEeC
Q 001358 939 ETHIQFHKDQTRFLLVH--ETHLAIYEAE--ELTCLK---QW--FP----ISSV------PISQAT-FSCDCRMVFTSFV 998 (1092)
Q Consensus 939 v~~l~~s~dg~~la~~~--d~~v~lwd~~--~~~~~~---~~--~~----~h~~------~v~~l~-fs~dg~~l~t~s~ 998 (1092)
+..++|+|||++|+++. ++.|.+|++. +++... .+ .. +|.. .+..++ |||||++|++++.
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 78999999999998853 5789999875 455421 11 11 1222 588999 9999999887764
Q ss_pred CC------cEEEEECC-CCceEEeeccccccCCCCccCcccceEEEECCC--CCCEEEEEeCC-CcEEEEecCCC
Q 001358 999 DG------TLSIHEAS-NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTN-GEVYVIEPNEP 1063 (1092)
Q Consensus 999 Dg------~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~--~~~~l~~~~~d-g~v~~w~~~~~ 1063 (1092)
+. +|.+|++. +|++.......... .. .+..++++|. |+++|++++.+ +.|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~-----~~--~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTP-----TS--GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECS-----SC--CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecC-----CC--CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 32 89999996 66654321100000 11 1224667884 47888888765 89999998643
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=1.6e-16 Score=176.72 Aligned_cols=296 Identities=11% Similarity=0.112 Sum_probs=201.3
Q ss_pred CCCceEEEEE-----cCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe---
Q 001358 344 PVQHTLLLVG-----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY--- 415 (1092)
Q Consensus 344 pdg~~llasg-----~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~--- 415 (1092)
+++++++++. ..|+.|.+||..+++.+.. +..+..+ .++|||||++|++++
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~ 71 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYH 71 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecc
Confidence 3566555543 2478999999999987653 2234344 899999999999986
Q ss_pred -------CCCEEEEEEccCCCCccceEEecc---cccceeEEEeeCCCCcEEEEEEe--CCCcEEEEECCCCceeEE-Ee
Q 001358 416 -------SKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYS-FE 482 (1092)
Q Consensus 416 -------~d~~i~iwd~~~~~~~~~~~~l~~---h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~~-~~ 482 (1092)
.++.|.+||..+++.+..+..... +......++|+|||+ +|+++. .+++|.+||+.+++.+.. +.
T Consensus 72 ~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 72 ERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp TTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 256799999998876654322211 224567899999999 455554 368999999999988877 54
Q ss_pred cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-------EecCCCCceEEEEEecCCCEEEEEecCCCCce
Q 001358 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-------~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1092)
. ... ..+.+.+.+ ...+++.+.||.+.+|++....... .+.....+ ..+.+++++..++..+. ++
T Consensus 150 ~-~~~-~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~ 221 (361)
T 2oiz_A 150 A-AGC-WSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YG 221 (361)
T ss_dssp G-TTE-EEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TS
T ss_pred C-CCc-ceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CC
Confidence 2 221 223344432 3678889999999999987633322 11222222 23445788877776654 45
Q ss_pred eEEEEeCCCCeEE--EEEeecc---cc----CCceEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCceEEE
Q 001358 556 FLVEWNESEGAIK--RTYQGLQ---LQ----HNSVSVVHFDTAKDQILAAGD-----------DHVIKIWDMNKVQLLTT 615 (1092)
Q Consensus 556 ~i~iwd~~~~~~~--~~~~~~~---~~----~~~v~~~~~~~~~~~l~~~s~-----------dg~i~iwd~~~~~~~~~ 615 (1092)
.++++|...+... ..+.... .. ......++|+|+++.++++.. .+.|.+||+.+++.+..
T Consensus 222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 6999998755422 2221100 00 011123689999988887643 35899999999999999
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC--CeeeecccccccceeeeecCC
Q 001358 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPI 675 (1092)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~ 675 (1092)
+..+. +..++|+|||++|+++.. +.|.+||..++ +.+..+......-..++++|+
T Consensus 302 i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 302 IPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp EECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred EecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence 98764 789999999999998887 99999999999 888776555555566666654
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=4.4e-17 Score=185.22 Aligned_cols=299 Identities=11% Similarity=-0.002 Sum_probs=194.1
Q ss_pred CcceeEecccCCCC-----ceEEeecCCCceEEEEEcCc--CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCC
Q 001358 323 PKTVAQTLIEGSSS-----PMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1092)
Q Consensus 323 p~~~~~~l~~h~~~-----V~~v~~spdg~~llasg~~d--~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h 395 (1092)
....+..|..+... +..++|||||++++.+...+ ..|.+||+.+++... +..+
T Consensus 19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~--------------------l~~~ 78 (396)
T 3c5m_A 19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ--------------------LTEG 78 (396)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE--------------------CCCS
T ss_pred CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE--------------------eecC
Confidence 34445566655433 88999999999655555443 368888998876543 2223
Q ss_pred CCc-EEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeE-------------------EEeeCCCCc
Q 001358 396 GVS-VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-------------------LAFSAPCKQ 455 (1092)
Q Consensus 396 ~~~-V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~-------------------~~~s~d~~~ 455 (1092)
... ...++|||||++|++++.++.|++||+.+++... ....+...... ++|+|+++.
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~ 155 (396)
T 3c5m_A 79 KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW 155 (396)
T ss_dssp SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred CCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc
Confidence 333 3347899999999999999999999999876432 22223322222 356788873
Q ss_pred EEEEEE-----eCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEE
Q 001358 456 ISVITC-----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVD 524 (1092)
Q Consensus 456 l~l~s~-----~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~ 524 (1092)
++.+ ..+..|.+||+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||+........
T Consensus 156 --~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (396)
T 3c5m_A 156 --EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI 231 (396)
T ss_dssp --HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEES
T ss_pred --eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEe
Confidence 3332 45678999999998765544 46677888888552 45666655543 3588888876544333
Q ss_pred ecCC-CCceEEEEEecCCCEEEEEecCC-CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC-CCCEEEEEe----
Q 001358 525 YDAP-GLGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAG---- 597 (1092)
Q Consensus 525 ~~~~-~~~i~~~~~s~dg~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s---- 597 (1092)
.... ...+..++|+|||++|+..+... .....|++||+.+++....... . ... +.|+| +++.+++++
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~----~~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 232 KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P----PCS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C----SEE-EEEECSSSSEEEEEECCC-
T ss_pred eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C----CCC-CCccCCCCceEEEecCCcc
Confidence 3321 33578899999999888775432 1224599999998876543322 2 123 88999 999888754
Q ss_pred ------------CCCeEEEEECCCCceEEEEeCCCCC--------CCCceEEEccCCCEEEEEeC-CCeEEEE--ECCCC
Q 001358 598 ------------DDHVIKIWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENRIKIL--ETPES 654 (1092)
Q Consensus 598 ------------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~~~~~-dg~i~iw--~~~~~ 654 (1092)
.++.|++||+.+++........... ..+..++|+|+|+.|+.++. ++...+| ++.++
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp ---------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred eeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 3478999999888754333222110 02466899999999887775 4544454 44444
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=1.3e-16 Score=178.57 Aligned_cols=250 Identities=9% Similarity=0.057 Sum_probs=172.7
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEcc-CCCCccceEEecccccceeEEEeeCCCCcEEEEEEe-----------
Q 001358 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------- 462 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~----------- 462 (1092)
+...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 34568889999999999999888 89999997 665332 1111111 235678999999853344553
Q ss_pred --CCCcEEEEECC-CCceeEEEe----cCCcceEEEeecccCCccEEEEEe-cCCeEEEEEcC-CCCceE--Eec--CCC
Q 001358 463 --DDKTIKVWDAV-TGSRTYSFE----GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARV--DYD--APG 529 (1092)
Q Consensus 463 --~d~~i~vwd~~-~~~~~~~~~----~~~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~-~~~~~~--~~~--~~~ 529 (1092)
.++++.+|++. +|+....+. .+...+.+++|+ +||+++++++ .++.|++|+++ +++... .+. .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s--pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD--PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC--CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 466654443 245678888885 4777777765 46899999998 554322 232 235
Q ss_pred CceEEEEEecCCCEEEEEecCCCCceeEEEEeCC--CCeEEE---EEeeccc----cCC------ceEEEE-EcCCCCEE
Q 001358 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR---TYQGLQL----QHN------SVSVVH-FDTAKDQI 593 (1092)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~~----~~~------~v~~~~-~~~~~~~l 593 (1092)
..+..++|+|||++++++.. .++.|.+|+.. +++... .+..... +.. .+..++ |+|+|+++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 67899999999999988763 24568887654 566432 2222110 011 478899 99999998
Q ss_pred EEEeCC-C-----eEEEEECC-CCceEEE---EeCCCCCCCCceEEEcc---CCCEEEEEeCC-CeEEEEECCCC
Q 001358 594 LAAGDD-H-----VIKIWDMN-KVQLLTT---IDAGGGLPENPRICFNK---NGTLLAVIANE-NRIKILETPES 654 (1092)
Q Consensus 594 ~~~s~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~~~~l~~~~~d-g~i~iw~~~~~ 654 (1092)
+++..+ + .|.+|++. +++.... ...+ ......++|+| +|++|+++..+ +.|.+|+....
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 876543 2 89999996 6665432 2222 22467899999 89999999864 89999998765
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=4.7e-16 Score=172.85 Aligned_cols=313 Identities=10% Similarity=0.099 Sum_probs=209.6
Q ss_pred CccEEEEEe------cCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEec------CCCCceeEEEEeCCCC
Q 001358 498 NIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT------SKEGESFLVEWNESEG 565 (1092)
Q Consensus 498 ~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~------~~~~~~~i~iwd~~~~ 565 (1092)
++++++... .|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445555543 3779999999888877666655444 8999999999998863 1223677999999999
Q ss_pred eEEEEEeeccc---cCCceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCceEEE-EeCCCCCCCCceEEEccCC-CEEE
Q 001358 566 AIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTT-IDAGGGLPENPRICFNKNG-TLLA 638 (1092)
Q Consensus 566 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l~ 638 (1092)
+.+..+..... +......++++|+|++++++.. +++|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 99888765320 1134667899999999999864 68999999999988877 65432 2235677765 6778
Q ss_pred EEeCCCeEEEEECCC-CCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceee
Q 001358 639 VIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 717 (1092)
+.+.||.+.+|+... ++...... ...+|+...
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~-----------------------------------------------~~~~~~~~~ 200 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSR-----------------------------------------------SKQMFSVKD 200 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEE-----------------------------------------------CCCCSCTTT
T ss_pred EECCCCcEEEEEECCCCcEeeecc-----------------------------------------------ccceEcCCC
Confidence 888999999998764 32221100 001111100
Q ss_pred ccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCC
Q 001358 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797 (1092)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 797 (1092)
.. ..+.+++++..++..+.++.+.++++....... +..|........ ...
T Consensus 201 -----------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~---~~~ 250 (361)
T 2oiz_A 201 -----------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDK---AKN 250 (361)
T ss_dssp -----------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHH---HTT
T ss_pred -----------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccc---ccc
Confidence 00 011224455555555566777777654321100 000110000000 000
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe------------CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001358 798 DSNSQEAVPCFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865 (1092)
Q Consensus 798 ~~~~~~~v~~~~~s~dg~~l~~~s------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1092)
-.......++|+||++.+.++. .+.|.+||+.+++.+.++..+. +.+++|+| |+++|++++.
T Consensus 251 --~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~- 324 (361)
T 2oiz_A 251 --WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG- 324 (361)
T ss_dssp --CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-
T ss_pred --cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-
Confidence 0011122378999988777653 2479999999999999998776 99999999 8889998887
Q ss_pred CeEEEEEcCCc--eeeEeeccccCCeEEEEEcCCCC
Q 001358 866 STILIYNARSS--EVISKLEGHSKRVTGLVFSDALN 899 (1092)
Q Consensus 866 g~v~iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~ 899 (1092)
+.|.+||..++ +.+..+..+......++++|||+
T Consensus 325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999999 99999877888889999999986
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=1.9e-14 Score=167.75 Aligned_cols=329 Identities=11% Similarity=0.108 Sum_probs=223.5
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECC--CCceEEEEeCCCCCCCCceEEEc
Q 001358 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
++.|.++|..+++.+..+... ..+..+.|+||++++++++.++.|.+||+. +++.+..+.... ....++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s 248 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETS 248 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEEC
T ss_pred CCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEc
Confidence 678999999999999888753 356789999999999999999999999996 888888877543 25789999
Q ss_pred ----cCCCEEEEEeC-CCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecc
Q 001358 632 ----KNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1092)
Q Consensus 632 ----~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 706 (1092)
|||++++++.. ++.+.++|..+.+.+..+......+....+.
T Consensus 249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~--------------------------------- 295 (567)
T 1qks_A 249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH--------------------------------- 295 (567)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE---------------------------------
T ss_pred cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccccc---------------------------------
Confidence 69998888765 5999999988877665443110000000000
Q ss_pred ccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEe-ecCCeeEEeeecCCccccCcccccccCCccccC
Q 001358 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 785 (1092)
Q Consensus 707 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1092)
....+..+.+++++..++.. ...|.+.++++.....
T Consensus 296 --------------------------p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~----------------- 332 (567)
T 1qks_A 296 --------------------------PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN----------------- 332 (567)
T ss_dssp --------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----------------
T ss_pred --------------------------CCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-----------------
Confidence 11245667777776554444 4458888777543210
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC-----CCCCeEEEEEcCCCCCE
Q 001358 786 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNV 858 (1092)
Q Consensus 786 ~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~ 858 (1092)
+....+ ........+.|+|+|++++++. ++.|.++|+.+++.+..+.. |.+.-..+ ++|+.+.+
T Consensus 333 -----~~v~~i---~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v 403 (567)
T 1qks_A 333 -----LKTTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPV 403 (567)
T ss_dssp -----EEEEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEE
T ss_pred -----ceeeee---eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcE
Confidence 111111 1233456789999999998886 58899999999998776643 33222222 67833555
Q ss_pred EEEEe-CCCeEEEEEcCC-------ceeeEeeccccCCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCce---
Q 001358 859 IAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGI--- 920 (1092)
Q Consensus 859 lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-------Dg~i~iwd~~~~~~--- 920 (1092)
.+++. .++.|.++|..+ .+.+.++......-..+..+||+++|..... ..+|.++|+.+.+.
T Consensus 404 ~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~ 483 (567)
T 1qks_A 404 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGS 483 (567)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSS
T ss_pred EEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccccc
Confidence 55554 468999999988 5677887765444345778999999887663 35899999987511
Q ss_pred -eeeeeeecC--CCCcCCCCCceEEEEecCCCEEEEE-e-----CCcEEEEEcCCceeeeeec
Q 001358 921 -QTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWF 974 (1092)
Q Consensus 921 -~~~~~~~~~--~~~~~~~~~v~~l~~s~dg~~la~~-~-----d~~v~lwd~~~~~~~~~~~ 974 (1092)
.....+... .+.......+..+.|+|||+.+.++ . ++.|.|+|..+++.+..+.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 484 DPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 111223210 0000011358899999999988774 2 6889999999999877643
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=8.7e-14 Score=162.13 Aligned_cols=246 Identities=11% Similarity=0.018 Sum_probs=161.4
Q ss_pred CCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Q 001358 344 PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 423 (1092)
Q Consensus 344 pdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iw 423 (1092)
|.+ +++++...+++|.++|..+++.+.... ....+..++|||||+++++++.++.|.+|
T Consensus 165 ~~~-~~~V~~~~~~~V~viD~~t~~v~~~i~--------------------~g~~p~~v~~SpDGr~lyv~~~dg~V~vi 223 (567)
T 1qks_A 165 LEN-LFSVTLRDAGQIALIDGSTYEIKTVLD--------------------TGYAVHISRLSASGRYLFVIGRDGKVNMI 223 (567)
T ss_dssp GGG-EEEEEETTTTEEEEEETTTCCEEEEEE--------------------CSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred CCc-eEEEEeCCCCeEEEEECCCCeEEEEEe--------------------CCCCccceEECCCCCEEEEEcCCCeEEEE
Confidence 444 478888889999999999998876421 23467799999999999999999999999
Q ss_pred Ecc--CCCCccceEEecccccceeEEEee----CCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccC
Q 001358 424 AYH--GGSDARQQLEIDAHVGNVNDLAFS----APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1092)
Q Consensus 424 d~~--~~~~~~~~~~l~~h~~~v~~~~~s----~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 497 (1092)
|+. +++.+. ++.... ....++|+ |||++ ++++...+++|.|+|..+.+.+..+......+....++
T Consensus 224 D~~~~t~~~v~---~i~~G~-~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~--- 295 (567)
T 1qks_A 224 DLWMKEPTTVA---EIKIGS-EARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH--- 295 (567)
T ss_dssp ETTSSSCCEEE---EEECCS-EEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE---
T ss_pred ECCCCCCcEeE---EEecCC-CCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEecccccccccccc---
Confidence 996 665443 343322 35789999 69995 45556677999999999998887765221100000000
Q ss_pred CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc
Q 001358 498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577 (1092)
Q Consensus 498 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 577 (1092)
....+..+..++++..++.... ..+.|.++|..+.+......-..
T Consensus 296 ------------------------------p~~rva~i~~s~~~~~~vv~~~---~~g~v~~vd~~~~~~~~v~~i~~-- 340 (567)
T 1qks_A 296 ------------------------------PEPRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISA-- 340 (567)
T ss_dssp ------------------------------SCCCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEEC--
T ss_pred ------------------------------CCCceEEEEEcCCCCEEEEEec---CCCeEEEEecCCCccceeeeeec--
Confidence 0113344555666555444331 24567777776543222211111
Q ss_pred CCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeC-CCCCCCCceEE-EccCCCEEEEEe--CCCeEEEEECC
Q 001358 578 HNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDA-GGGLPENPRIC-FNKNGTLLAVIA--NENRIKILETP 652 (1092)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~-~s~~~~~l~~~~--~dg~i~iw~~~ 652 (1092)
......+.|+|++++++++. .++.|.++|..+++.+..+.. ......-.... ++|++..+.+.+ .++.|.+++..
T Consensus 341 ~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 341 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence 24567789999999988765 678999999999998888875 32111112333 578755554433 35789998876
Q ss_pred C
Q 001358 653 E 653 (1092)
Q Consensus 653 ~ 653 (1092)
+
T Consensus 421 ~ 421 (567)
T 1qks_A 421 P 421 (567)
T ss_dssp T
T ss_pred C
Confidence 5
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=1.1e-15 Score=186.56 Aligned_cols=295 Identities=10% Similarity=0.002 Sum_probs=196.5
Q ss_pred EecccCCCCceEEeecCCCceEEEEE--cCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEE-----
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVG--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN----- 400 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg--~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~----- 400 (1092)
..+.+|...|..++|++++- +++++ +.++...||....+..... +..|...+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~ 76 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFE 76 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGG
T ss_pred HHHhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccc
Confidence 45678999999999999875 56666 5578899999654443332 455655555
Q ss_pred ----EEEEC--CCCCE-EEEEeC-CCEEEEEEcc--C-CCCccceEEecc-----cccceeEEEeeCCCCcEEEEEEeCC
Q 001358 401 ----RVVWS--PDGSL-LGVAYS-KHIVQLYAYH--G-GSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDD 464 (1092)
Q Consensus 401 ----~l~~s--pdg~~-las~~~-d~~i~iwd~~--~-~~~~~~~~~l~~-----h~~~v~~~~~s~d~~~l~l~s~~~d 464 (1092)
..+|+ |||++ ||.++. +..|.+|++. + ++ .. .+.. |...+.+++|||||+ .|++++.|
T Consensus 77 ~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~ 150 (662)
T 3azo_A 77 YSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEE 150 (662)
T ss_dssp TCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEE
T ss_pred cCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEec
Confidence 56565 99999 887654 4566777765 3 43 22 3444 677899999999999 67766665
Q ss_pred ----------CcEEEEECCC------CceeEEEe-cCCcceEEEeecccCCccEEEEEecC--------CeEEEEEcC-C
Q 001358 465 ----------KTIKVWDAVT------GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVD--------GKIKAWLYD-S 518 (1092)
Q Consensus 465 ----------~~i~vwd~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~d--------g~i~vwd~~-~ 518 (1092)
..|++||+.+ ++ ...+. .+...+..++| ++||++|+.++.+ ..|.+||++ +
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 5899999988 54 44555 55666777777 5588899887755 379999998 4
Q ss_pred C---CceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC-----ceEEEEEcCCC
Q 001358 519 L---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN-----SVSVVHFDTAK 590 (1092)
Q Consensus 519 ~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~ 590 (1092)
+ ........+...+..++|+|||+.++++.. ++...|++||..+++.......+..... .+..++|+|++
T Consensus 228 g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 228 GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred CcccccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence 5 233333344678899999999995555433 3344789999888876554443321000 14678899999
Q ss_pred CEEEEEeCCCeEEEE--ECCCCceEEEEeCCCCCCCCceEEEccCCCE--EEEEeCCC--eEEEEECCCCCeee
Q 001358 591 DQILAAGDDHVIKIW--DMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANEN--RIKILETPESNSVD 658 (1092)
Q Consensus 591 ~~l~~~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg--~i~iw~~~~~~~~~ 658 (1092)
..+++++. +.+++| |..+++ +..+..+. ..+..+ +++++.. ++.++.+. .|.+++..+++...
T Consensus 306 ~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 306 LIAVVHGK-GAAVLGILDPESGE-LVDAAGPW--TEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp CEEEEEBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred EEEEEEEc-CccEEEEEECCCCc-EEEecCCC--CeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 99999988 999999 655555 55555442 234444 1444443 33444454 45556666665443
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.71 E-value=2.5e-15 Score=167.13 Aligned_cols=262 Identities=10% Similarity=0.112 Sum_probs=178.0
Q ss_pred CceEEeecCCCceEEEEE--------cCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 336 SPMSMDFHPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg--------~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
.+..+++ ||++++.+. ..++.|.+||+.+++... + ..+..++||||
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~SpD 69 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISPD 69 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECTT
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECCC
Confidence 5677788 898654442 125679999998876432 2 46788999999
Q ss_pred CCEEEEEeCC---C--EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC-------------------
Q 001358 408 GSLLGVAYSK---H--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------------------- 463 (1092)
Q Consensus 408 g~~las~~~d---~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~------------------- 463 (1092)
|++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
T 2gop_A 70 GKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWFD 142 (347)
T ss_dssp SSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC--
T ss_pred CCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceeec
Confidence 9999988653 3 47888888765332 223334 999999999994 555442
Q ss_pred --------CCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCC-------eEEEEEcCCCCceEEecCC
Q 001358 464 --------DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-------KIKAWLYDSLGARVDYDAP 528 (1092)
Q Consensus 464 --------d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-------~i~vwd~~~~~~~~~~~~~ 528 (1092)
...|.+||+.+++.+..+.. . .+..++|+ +|| +++++..++ ...+|.++ ......+..+
T Consensus 143 g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~ 216 (347)
T 2gop_A 143 DLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK 216 (347)
T ss_dssp -------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE
T ss_pred CcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEeccC
Confidence 25799999999887555654 3 67778885 577 777776542 44555555 3333333333
Q ss_pred CCceEEEEEecCCCEEEEEecCCC----CceeEEEEeCCCCeEEEEEeeccccCCceEE-EEEcCCCCEEEEEeCCCeEE
Q 001358 529 GLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNESEGAIKRTYQGLQLQHNSVSV-VHFDTAKDQILAAGDDHVIK 603 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~s~dg~i~ 603 (1092)
..+..+ +|||++|+.++.... ....|++|| +++......++. ..+.. +.|+ ++ .+++++.++.++
T Consensus 217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence 444444 999999988775321 245789999 666544444433 56775 8999 88 888899999999
Q ss_pred EEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE-EEEECC
Q 001358 604 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETP 652 (1092)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i-~iw~~~ 652 (1092)
+| +.+++....+.. ...+..++|+| .++++++.++.. .+|.+.
T Consensus 287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99 876665444432 23578899999 677777776654 677665
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.70 E-value=7.5e-16 Score=175.00 Aligned_cols=244 Identities=9% Similarity=-0.010 Sum_probs=166.6
Q ss_pred EEEEEECCCCCEEEEEeCC---CEEEEEEccCCCCccceEEecccccc-eeEEEeeCCCCcEEEEEEeCCCcEEEEECCC
Q 001358 399 VNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~-v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
+.+++|||||++||..... ..|.+||+.+++... +..+... ...+.|+|||+ .|+.++.++.|++||+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLET 111 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECCC
Confidence 6778999999999887543 478899998875332 3333333 33478999999 788888888999999999
Q ss_pred CceeEEEecCCcceEE---Eee--------------cccCCccEEEEE-----ecCCeEEEEEcCCCCceEEecCCCCce
Q 001358 475 GSRTYSFEGHGAPVYS---LCP--------------HAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGC 532 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~---i~~--------------~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~i 532 (1092)
++.......+...... +++ ..+++++.++.. ..+..|.+||+.+++..... .+...+
T Consensus 112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~ 190 (396)
T 3c5m_A 112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWL 190 (396)
T ss_dssp CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCE
T ss_pred CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccc
Confidence 8876666545443322 111 123344444433 35668999999887654443 345578
Q ss_pred EEEEEec-CCCEEEEEecCCCC--ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CeEEE
Q 001358 533 TRMAYSA-NGRRLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKI 604 (1092)
Q Consensus 533 ~~~~~s~-dg~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~i 604 (1092)
..+.|+| +++.|+.++..... ...|++||..+++......... ...+..+.|+|++++|+.++.+ +.|++
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE--GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT--TEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC--CccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 8999999 88888777642110 1569999987765433333111 1357889999999988776543 45999
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEEEe----------------CCCeEEEEECCCCCe
Q 001358 605 WDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIA----------------NENRIKILETPESNS 656 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~----------------~dg~i~iw~~~~~~~ 656 (1092)
||+.+++......... .. ++|+| +|+++++++ .++.|++|+..+++.
T Consensus 269 ~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 269 ANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp ECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred EECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 9999887655443321 23 89999 999888765 347899999987653
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=2.7e-14 Score=153.75 Aligned_cols=242 Identities=10% Similarity=0.092 Sum_probs=174.9
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecC------CCCCeEEEEEc-CCCCCEEEEEeC-CCeEEEE
Q 001358 801 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP------PSPTATSLAFN-PHDNNVIAIGMD-DSTILIY 871 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s-~~d~~~lasg~~-dg~v~iw 871 (1092)
+-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..++++ + +++++++... ++.|++|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEE
Confidence 456688999999999888765 6899999987 666666542 33578899994 5 7766666643 8899999
Q ss_pred EcCCceeeEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCE
Q 001358 872 NARSSEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950 (1092)
Q Consensus 872 d~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 950 (1092)
| .+++.+..+. .+...+.+++++|+|+++++...++.|.+||..... .. .+... +.. ..+..++++++|++
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~--~~~~~-~~~---~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-LH--KFGCS-KHL---EFPNGVVVNDKQEI 177 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EE--EEECT-TTC---SSEEEEEECSSSEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-EE--EeCCC-Ccc---CCcEEEEECCCCCE
Confidence 9 5677776664 345678999999999988888888999999975422 11 12111 111 24789999999997
Q ss_pred EEEE-eCCcEEEEEcCCceeeeeec-cCCCcCEEEEEEecCCCEEEEEeCCC-cEEEEECCCCceEEeeccccccCCCCc
Q 001358 951 FLLV-HETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTTS 1027 (1092)
Q Consensus 951 la~~-~d~~v~lwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~t~s~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1027 (1092)
+++. .++.|++||.. ++.+..+. .++...+..++++++|+++++...++ .|.+|+. +++.+..+...
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~-------- 247 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK-------- 247 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES--------
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc--------
Confidence 7774 57899999974 55544432 22346789999999999988887776 9999995 56666555421
Q ss_pred cCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001358 1028 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1028 ~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
.....+.+++++| ++.++++ +.|++|++|++....
T Consensus 248 ~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 248 VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEccccc
Confidence 1122456788998 4665555 689999999986544
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=1.6e-14 Score=158.84 Aligned_cols=248 Identities=11% Similarity=0.085 Sum_probs=183.9
Q ss_pred CCceEEeecCCCceEEEEEcCc------------------------CcEEEEecCCCCceeeeeeeeeecccccceeEEe
Q 001358 335 SSPMSMDFHPVQHTLLLVGTNV------------------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d------------------------~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 390 (1092)
+.|.+++++|+|+ ++++.+.+ ++|.+||..+|+.+...
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----------------- 85 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS----------------- 85 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----------------
Confidence 4899999999998 67777766 47999999888765420
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC-CccceEEe---------cccccceeEEEeeC-CCCcEEEE
Q 001358 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEI---------DAHVGNVNDLAFSA-PCKQISVI 459 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~l---------~~h~~~v~~~~~s~-d~~~l~l~ 459 (1092)
-.++-..+..++++|+|+++++...++.|++||..+.. .+. .+ .++......++|+| ++. +++
T Consensus 86 -~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 86 -GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp -CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred -CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 22455689999999999988888889999999987542 222 33 24445788999999 677 677
Q ss_pred EEe-CCCcEEEEECCCCceeEEEecCC----------cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--
Q 001358 460 TCG-DDKTIKVWDAVTGSRTYSFEGHG----------APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-- 526 (1092)
Q Consensus 460 s~~-~d~~i~vwd~~~~~~~~~~~~~~----------~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-- 526 (1092)
+.+ .++.|++|| .+|+.+..+.... .....+++.+. .+.++++...++.|++|+.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 776 689999999 6788777774322 33778888543 26788888889999999998777666653
Q ss_pred CCCCceEEEEEecCCCEEEEEecC---CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEE
Q 001358 527 APGLGCTRMAYSANGRRLFSCGTS---KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1092)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~---~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1092)
.....+..++++| +..+...+.. ......|++||..+++.+..+.....+...+..++++|+|..+++...++.|+
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 3455788999999 4444333210 12245799999999999888753222236789999999997777788899999
Q ss_pred EEECCC
Q 001358 604 IWDMNK 609 (1092)
Q Consensus 604 iwd~~~ 609 (1092)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
No 177
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.68 E-value=2.7e-10 Score=141.38 Aligned_cols=587 Identities=9% Similarity=0.020 Sum_probs=338.7
Q ss_pred CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|+++.-.++|... .|+.+| +..||- ..... +....... -.-....|.++...++|.+.+ |
T Consensus 43 n~v~~I~qD~~G~lW--igT~~G-L~ryDG---~~f~~-----~~~~~~~~------~~l~~n~I~~i~~d~~g~lWi-g 104 (795)
T 4a2l_A 43 STVFSIDQDKRGNMW--FATYDG-VNKYDG---YAFTV-----YQHNEDDP------NSIANDISRIVKTDSQGRVWI-G 104 (795)
T ss_dssp SCEEEEEECTTSCEE--EEETTE-EEEECS---SCEEE-----ECCCTTCT------TSCSCSCEEEEEECTTSCEEE-E
T ss_pred ceeEEEEEcCCCCEE--EeecCc-CcccCC---CceEE-----EeCCCCCC------CcccccceeEEEECCCCCEEE-E
Confidence 489999999999644 444554 566663 22211 11000000 000246799999999987665 4
Q ss_pred eCCCEEEEEEccCCCCccceEEeccccc----ceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC-Ccc-e
Q 001358 415 YSKHIVQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAP-V 488 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~----~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~-v 488 (1092)
+.+| +..||..+++.. .+..... .|.++...++|. +.+ ++. +.|..||..+++.......+ ... |
T Consensus 105 T~~G-l~~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i 175 (795)
T 4a2l_A 105 TRDG-LSRYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTI 175 (795)
T ss_dssp ESSC-EEEEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCC
T ss_pred eCCc-hheeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcce
Confidence 4566 899998775421 2222111 288999888887 343 444 45899998776543211111 112 6
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001358 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
.++... .++. +..++.++.+..|+..+....... ......|.++...++|...+..... -++.||..+++.
T Consensus 176 ~~i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~-----Gl~~~~~~~~~~ 247 (795)
T 4a2l_A 176 ASTLYR--QGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGA-----GLFLINPKTKEI 247 (795)
T ss_dssp EEEEEE--ETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSS-----CEEEEETTTTEE
T ss_pred EEEEEC--CCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCC-----CeEEEeCCCCeE
Confidence 666653 3444 445666556888887665543321 1234568888888888766654221 289999888765
Q ss_pred EEEEeec----cccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----CCCCCCceEEEccCCCEEE
Q 001358 568 KRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 568 ~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~ 638 (1092)
....... ......|.++...++|. +..|+.+ -|.+||..++......... -....|.++...++|. +.
T Consensus 248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW 324 (795)
T 4a2l_A 248 KNYLHSPSNPKSISSNYIRSLAMDSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MW 324 (795)
T ss_dssp EEECCCTTCTTSCSCSBEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EE
T ss_pred EEeecCCCCccccCCCeEEEEEEcCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EE
Confidence 4432221 11235799999988876 4455555 5899998877654432211 0123577888888876 55
Q ss_pred EEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeec
Q 001358 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~ 718 (1092)
+|+.++.|..|+..+.... .... . +.
T Consensus 325 igt~~~Gl~~~~~~~~~~~-~~~~----------~----------------------~~--------------------- 350 (795)
T 4a2l_A 325 LGTYFGGLNYYHPIRNRFK-NIRN----------I----------------------PY--------------------- 350 (795)
T ss_dssp EEESSSCEEEECGGGGSSE-EECC----------C----------------------TT---------------------
T ss_pred EEECCCCeEEeCCCcccce-EEcC----------C----------------------CC---------------------
Confidence 6777777877775433111 0000 0 00
Q ss_pred cCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCC
Q 001358 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 798 (1092)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 798 (1092)
+.......|.++...++|. +..++.++-+..|+...... ..+....+. .. ..+
T Consensus 351 ----------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~-~~-~~l-- 403 (795)
T 4a2l_A 351 ----------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDE-SA-RGI-- 403 (795)
T ss_dssp ----------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC--------CC--
T ss_pred ----------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCC-cc-cCC--
Confidence 0001234578888888887 44455555566665332111 001000000 00 000
Q ss_pred CCCCCCeeEEEEecCCC-EEEEEeCCeEEEEEcCCceeeEEec----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001358 799 SNSQEAVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 873 (1092)
Q Consensus 799 ~~~~~~v~~~~~s~dg~-~l~~~sdg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~ 873 (1092)
....|.+++..++|+ +.+...++.+..+|..+++...... .+...|.++...+ ++.+.+ |+.+ -+.+||.
T Consensus 404 --~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~ 478 (795)
T 4a2l_A 404 --GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNP 478 (795)
T ss_dssp --SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEET
T ss_pred --CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeC
Confidence 245789999999998 5554445789999998776443321 1345789999988 676555 4554 5888998
Q ss_pred CCceeeEeec------cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC
Q 001358 874 RSSEVISKLE------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 874 ~~~~~~~~l~------~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 947 (1092)
.+++...... -+...|.++...++|++.+... . -|..||..+++. . ..............|.++...++
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~-~--~~~~~~~~~l~~~~i~~i~~d~~ 553 (795)
T 4a2l_A 479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI-Q--KASILPVSNVTKLFTNCIYEASN 553 (795)
T ss_dssp TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE-E--ECCCSCSCGGGGSCEEEEEECTT
T ss_pred CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE-E--EecCCCCCCCCCCeeEEEEECCC
Confidence 8775433221 1236799999999988777554 4 488999887543 1 11000100111236889999999
Q ss_pred CCEEEEEeCCcEEEEEcCCceeeeeec-cC-CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCC
Q 001358 948 QTRFLLVHETHLAIYEAEELTCLKQWF-PI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1092)
Q Consensus 948 g~~la~~~d~~v~lwd~~~~~~~~~~~-~~-h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1025 (1092)
|.+.+++.. .+..||..+++...-.. .+ ....|.++...++|.+.+++ . +-|..|+..++... .+....-++..
T Consensus 554 g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~dGl~~~ 629 (795)
T 4a2l_A 554 GIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESDGLQSN 629 (795)
T ss_dssp SCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGGTCSCS
T ss_pred CCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcCCCccc
Confidence 997776554 78899987765433111 11 14568899999999877755 3 45788998877543 34322222222
Q ss_pred CccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358 1026 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1026 ~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.+...++..++ + ..|..|+.+|- ..++..
T Consensus 630 ----~f~~~~~~~~~-~-G~l~~g~~~Gl-~~~~p~ 658 (795)
T 4a2l_A 630 ----QFNTASYCRTS-V-GQMYFGGINGI-TTFRPE 658 (795)
T ss_dssp ----CEEEEEEEECT-T-SCEEEEETTEE-EEECGG
T ss_pred ----cCccCceeECC-C-CeEEEecCCce-EEEcHH
Confidence 22223555665 3 45777777774 455543
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=1.4e-14 Score=159.32 Aligned_cols=248 Identities=12% Similarity=0.095 Sum_probs=181.6
Q ss_pred CCCeeEEEEecCCCEEEEEeCC-------------------------eEEEEEcCCceeeEEec-CCCCCeEEEEEcCCC
Q 001358 802 QEAVPCFALSKNDAYLFSASGG-------------------------VISLYIVMTFKTILTIM-PPSPTATSLAFNPHD 855 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg-------------------------~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d 855 (1092)
-..+.+++++|+|+++++...+ .|.+||..+++.+..+. .+......++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4568999999999999887643 69999999898877665 3446789999999 8
Q ss_pred CCEEEEEeCCCeEEEEEcCCce-eeEee---------ccccCCeEEEEEcC-CCCEEEEEe-CCCcEEEEEcCCCceeee
Q 001358 856 NNVIAIGMDDSTILIYNARSSE-VISKL---------EGHSKRVTGLVFSD-ALNILVSSG-GDAQIFVWDVDGWGIQTC 923 (1092)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~sp-dg~~l~s~s-~Dg~i~iwd~~~~~~~~~ 923 (1092)
++++++...++.|++|+..... .+..+ .++......++++| ++.++++.+ .++.|++|+.+. +....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence 8888888889999999986542 45555 34556789999999 888888886 689999999543 32221
Q ss_pred eeeecC-----CCCcCCCCCceEEEEecC-CCEEEE-EeCCcEEEEEcCCceeeeeec-cCCCcCEEEEEEec------C
Q 001358 924 RSLQTP-----DGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAEELTCLKQWF-PISSVPISQATFSC------D 989 (1092)
Q Consensus 924 ~~~~~~-----~~~~~~~~~v~~l~~s~d-g~~la~-~~d~~v~lwd~~~~~~~~~~~-~~h~~~v~~l~fs~------d 989 (1092)
...... .+.. .....++++|+ |.++++ ..++.|++||..+++.+..+. ..+...+..++|+| +
T Consensus 181 ~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~ 257 (329)
T 3fvz_A 181 WGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN 257 (329)
T ss_dssp ECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred eccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence 110000 0111 24789999999 555555 367789999999888877653 34567889999999 3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001358 990 CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 990 g~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
|+..++...+.+|++|++.+|+.+..+.... ...-.+..++++| ++.++++...++.|++|++..
T Consensus 258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred CCEEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 3333333345589999999999887764211 1112456789999 468888888999999999854
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=1.4e-14 Score=176.79 Aligned_cols=249 Identities=11% Similarity=0.002 Sum_probs=171.4
Q ss_pred ecCCCCcEEEEEECCCCCEEEEE--eCCCEEEEEEccCCCCccceEEeccccccee---------EEEee--CCCCcEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQQLEIDAHVGNVN---------DLAFS--APCKQISV 458 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~--~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~---------~~~~s--~d~~~l~l 458 (1092)
+.+|...|..++|++++.++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+ |
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~-l 94 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL-L 94 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE-E
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE-E
Confidence 66789999999999887777777 557889999975443322 4566666666 66666 999941 4
Q ss_pred EEEe-CCCcEEEEECC--CCceeEEEec-----CCcceEEEeecccCCccEEEEEecC----------CeEEEEEcCCC-
Q 001358 459 ITCG-DDKTIKVWDAV--TGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISVD----------GKIKAWLYDSL- 519 (1092)
Q Consensus 459 ~s~~-~d~~i~vwd~~--~~~~~~~~~~-----~~~~v~~i~~~~~~~~~~l~s~~~d----------g~i~vwd~~~~- 519 (1092)
+.++ .+..|.+|++. ++.....+.. |...+.+++|+ +||+.|++++.+ ..|.+||+.+.
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s--pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL--PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE--TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC--CCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 4443 35667777765 2034455555 56677888885 577899988877 57999999872
Q ss_pred ----CceEEec-CCCCceEEEEEecCCCEEEEEecCCC----CceeEEEEeCC-CC---eEEEEEeeccccCCceEEEEE
Q 001358 520 ----GARVDYD-APGLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNES-EG---AIKRTYQGLQLQHNSVSVVHF 586 (1092)
Q Consensus 520 ----~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~~~v~~~~~ 586 (1092)
.....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++. ..+..+.|
T Consensus 173 ~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~---~~~~~~~~ 249 (662)
T 3azo_A 173 AADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE---EAIAQAEW 249 (662)
T ss_dssp TTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT---BCEEEEEE
T ss_pred cccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC---ceEcceEE
Confidence 2334444 44567788999999999998875432 13579999998 57 4444444444 67899999
Q ss_pred cCCCCEEEEEeCCC--eEEEEECCCCceEEEEeCCCCC------CCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001358 587 DTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGL------PENPRICFNKNGTLLAVIANENRIKILE 650 (1092)
Q Consensus 587 ~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 650 (1092)
+|||+.+++++.++ .|++||..+++.......+... ..+..++|+|+++++++++. +.++||.
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence 99999777787788 6777777677655443322111 01456777777777777777 7777773
No 180
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.65 E-value=4.2e-10 Score=139.60 Aligned_cols=535 Identities=8% Similarity=0.034 Sum_probs=319.0
Q ss_pred CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|.++...++|..++ |+. +.+..||..+++...- ... .......|.++...++|.+.+..
T Consensus 88 n~I~~i~~d~~g~lWi--gT~-~Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~t 148 (795)
T 4a2l_A 88 DISRIVKTDSQGRVWI--GTR-DGLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIST 148 (795)
T ss_dssp SCEEEEEECTTSCEEE--EES-SCEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEEE
T ss_pred cceeEEEECCCCCEEE--EeC-CchheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEEE
Confidence 4799999999998333 334 4589999877643221 000 00000118888888888766654
Q ss_pred eCCCEEEEEEccCCCCccceEEeccc-ccc-eeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcceEEE
Q 001358 415 YSKHIVQLYAYHGGSDARQQLEIDAH-VGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 491 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~-v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~i 491 (1092)
..| +..||..+++.... ..++ ... |.++...+++. +..++.++-|..||..+++..... ......|.++
T Consensus 149 -~~g-l~~~~~~~~~~~~~---~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i 220 (795)
T 4a2l_A 149 -PEG-LIMFDIKESKFIDD---SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAI 220 (795)
T ss_dssp -TTE-EEEEETTTTEEECS---SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEE
T ss_pred -CCc-eEEEECCCCEEEec---cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEE
Confidence 444 89999876532110 0011 123 88888888886 444665556899998877654321 1234567777
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC
Q 001358 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
... .++. +..++.++-+..||..+......... ....|.++...++|...+... . -|.+||..+
T Consensus 221 ~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~-----Gl~~~~~~~ 291 (795)
T 4a2l_A 221 LQQ--SPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-N-----DLNIYHEGT 291 (795)
T ss_dssp EEE--ETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-S-----CEEEEETTT
T ss_pred EEc--CCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-C-----hhheEcCCC
Confidence 653 3444 55555554588888766543322211 235689999998888666542 1 289999888
Q ss_pred CeEEEEEeec----cccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC--C--CCCCCceEEEccCCCE
Q 001358 565 GAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--G--GLPENPRICFNKNGTL 636 (1092)
Q Consensus 565 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~--~--~~~~v~~v~~s~~~~~ 636 (1092)
+......... ......|.++...++|. +..|+.++-|..|+..++......... . ....|.+++..++|.
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~- 369 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN- 369 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-
Confidence 7654432211 12246799999998875 666777788999987665543222111 0 123477888888776
Q ss_pred EEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceecee
Q 001358 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1092)
|.+|+.++.|..|+..++.......... ..
T Consensus 370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~~---------------------------------~~----------------- 399 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQRFTSYTLQED---------------------------------ES----------------- 399 (795)
T ss_dssp EEEEESSSCEEEECTTTCCEEEECCC------------------------------------------------------
T ss_pred EEEEECCCCeEEEcCCCCcEEEEecCCC---------------------------------Cc-----------------
Confidence 5567777788888876543211100000 00
Q ss_pred eccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecC
Q 001358 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 796 (1092)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 796 (1092)
. . ......|.++...++|+.|..++.++-+..|+...... ..+.....
T Consensus 400 -------~-~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~------------~~~~~~~~-------- 447 (795)
T 4a2l_A 400 -------A-R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV------------ENFNQRNS-------- 447 (795)
T ss_dssp --------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE------------EEECTTTS--------
T ss_pred -------c-c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE------------EEeecCCC--------
Confidence 0 0 00234577888888888455555555566666432211 11110000
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecC------CCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001358 797 TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILI 870 (1092)
Q Consensus 797 ~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~v~i 870 (1092)
......|.++...++|.+.+... +.+.+||..+++....... ....|.++...+ ++.+.+ |+. +-+..
T Consensus 448 --~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~ 521 (795)
T 4a2l_A 448 --QLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSV 521 (795)
T ss_dssp --CCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEE
T ss_pred --CcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEE
Confidence 01345789999999998777665 5688999887655432211 235789999988 676555 444 45888
Q ss_pred EEcCCceeeEeec-------cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEE
Q 001358 871 YNARSSEVISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943 (1092)
Q Consensus 871 wd~~~~~~~~~l~-------~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1092)
|+..+++. .+. .+...|.++...++|++.++.. .| |..||..+++... .....+.. ...|.++.
T Consensus 522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~~---~~~~~gl~--~~~i~~i~ 592 (795)
T 4a2l_A 522 FKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIKR---YNTTNGLP--NNVVYGIL 592 (795)
T ss_dssp EEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEEE---ECGGGTCS--CSCEEEEE
T ss_pred EeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEEE---eCCCCCCc--hhheEEEE
Confidence 99887765 222 2456799999999998766543 44 8889987754322 22222221 13588899
Q ss_pred EecCCCEEEEEeCCcEEEEEcCCceeeeeeccCC---CcCE--EEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358 944 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPI--SQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 944 ~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h---~~~v--~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
..++|.+.+++ ++.|..|+..+++... +.... ...+ .++...+||++++ |+.+| +..++..
T Consensus 593 ~d~~g~lWi~t-~~Gl~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 593 EDSFGRLWLST-NRGISCFNPETEKFRN-FTESDGLQSNQFNTASYCRTSVGQMYF-GGING-ITTFRPE 658 (795)
T ss_dssp ECTTSCEEEEE-TTEEEEEETTTTEEEE-ECGGGTCSCSCEEEEEEEECTTSCEEE-EETTE-EEEECGG
T ss_pred ECCCCCEEEEc-CCceEEEcCCCCcEEE-cCCcCCCccccCccCceeECCCCeEEE-ecCCc-eEEEcHH
Confidence 99999877766 5668888987665432 21111 1222 4677788897666 66676 4455543
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.65 E-value=1.7e-13 Score=147.47 Aligned_cols=248 Identities=14% Similarity=0.157 Sum_probs=177.7
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE-CCCCC
Q 001358 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 409 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~-spdg~ 409 (1092)
.+|-..+.+++++|+|+ ++++...++.|.+||.. ++.+..... .....+|...+..+++ .++|+
T Consensus 26 ~g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~ 90 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGD 90 (286)
T ss_dssp TTCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTE
T ss_pred CCccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCe
Confidence 35556899999999998 78888888999999987 554432110 0001234567899999 57777
Q ss_pred EEEEEeC-CCEEEEEEccCCCCccceEEec-ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe--cCC
Q 001358 410 LLGVAYS-KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GHG 485 (1092)
Q Consensus 410 ~las~~~-d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~ 485 (1092)
++++... ++.|.+|| .+++.+. .+. .+...+.+++++++|+ ++++...++.|.+||. .++.+..+. ++.
T Consensus 91 l~v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~ 163 (286)
T 1q7f_A 91 IIVTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHL 163 (286)
T ss_dssp EEEEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTC
T ss_pred EEEEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCcc
Confidence 7776643 78899999 4454333 332 3445789999999998 7788778899999995 566666664 344
Q ss_pred cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CCceEEEEEecCCCEEEEEecCCCCce-eEEEEeC
Q 001358 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGES-FLVEWNE 562 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~~~~~~~~-~i~iwd~ 562 (1092)
..+..+++.+ ++.++++...++.|++||... .....+... ...+..++++++|+.+++... ++ .|.+||.
T Consensus 164 ~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~ 236 (286)
T 1q7f_A 164 EFPNGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ 236 (286)
T ss_dssp SSEEEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT
T ss_pred CCcEEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC
Confidence 5678888854 667888888899999999743 444444433 256889999999987777643 33 7999995
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001358 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1092)
+++.+..+..+. ....+..++++|+++.+++ +.++.|++|+....
T Consensus 237 -~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 237 -DGQLISALESKV-KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -TSCEEEEEEESS-CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred -CCCEEEEEcccC-CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 566777776643 1234789999999976555 67999999997653
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=1.1e-13 Score=152.75 Aligned_cols=274 Identities=10% Similarity=0.024 Sum_probs=188.6
Q ss_pred CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|.+++|+|++. .++..+.++.++.|. ++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSN-SAVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGG-CSSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCcc-ceeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 3688999999997 466667788899992 332221 44566778999999999988888
Q ss_pred eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC----CcEEEEECCCCceeEEEe--cCCcce
Q 001358 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE--GHGAPV 488 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~--~~~~~v 488 (1092)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||.++++....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 888999999998875332 1224567899999999998 66766655 689999988877654443 234568
Q ss_pred EEEeecccCCccEEEEEec------CCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358 489 YSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
..+++.+ ++.++++... .+.|..++....+... +......+..++|+|+|+.++.+.. .++.|++||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8888854 6667776553 2455555544433322 2222235788999999997766542 1457999998
Q ss_pred CC-CeEEEEEe-----eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC----CCCCceEEEcc
Q 001358 563 SE-GAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNK 632 (1092)
Q Consensus 563 ~~-~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~ 632 (1092)
.+ +.....+. ... ....+..++++++++..++...++.|.+||. +++.+..+..+.. ...+.+++|+|
T Consensus 212 ~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP 289 (333)
T ss_dssp CTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred cCCCcCcccccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC
Confidence 63 33322211 111 0136788999999988787778899999998 5677777654421 11478999999
Q ss_pred CCCEEEEEeCCC
Q 001358 633 NGTLLAVIANEN 644 (1092)
Q Consensus 633 ~~~~l~~~~~dg 644 (1092)
+++.|++++.++
T Consensus 290 dg~~L~v~~~~g 301 (333)
T 2dg1_A 290 GTNQLIICSNDI 301 (333)
T ss_dssp TSCEEEEEEECG
T ss_pred CCCEEEEEeCcc
Confidence 987777766653
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=1.4e-13 Score=168.76 Aligned_cols=250 Identities=10% Similarity=-0.009 Sum_probs=176.0
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCC-----EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCc--
Q 001358 394 DPGVSVNRVVWSPDGSLLGVAYSKH-----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~-----~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~-- 466 (1092)
+|...+..++|||||++||.++.++ .|++||+.+++.... .+ ....+..++|+|||+ .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~--~~~~~~~~~wspDg~--~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL--ERVKFSCMAWTHDGK--GMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE--EEECSCCEEECTTSS--EEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc--cCcccceEEEEeCCC--EEEEEEECCccc
Confidence 4556789999999999999876543 899999999875442 12 222367899999999 5776666655
Q ss_pred --------------EEEEECCCCcee--EEEec--CCcceEEEeecccCCccEEEEEec-----CCeEEEEEcCC-----
Q 001358 467 --------------IKVWDAVTGSRT--YSFEG--HGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYDS----- 518 (1092)
Q Consensus 467 --------------i~vwd~~~~~~~--~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~-----dg~i~vwd~~~----- 518 (1092)
|++|++.+++.. ..+.. |...+..+.| ++||++|+.++. +..|.+||+.+
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 999999887632 22232 4455667777 557788887765 56899999976
Q ss_pred -CC-ceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEE
Q 001358 519 -LG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1092)
Q Consensus 519 -~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~ 594 (1092)
+. ....+..+...+.. .|+++|+.|+..+........|++||+.++.. ...+..+. ....+..+.|++++..++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEE
T ss_pred CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEE
Confidence 32 34444444444444 58899999888775443467899999988742 34444443 013677889987777778
Q ss_pred EEeCCCe--EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCC
Q 001358 595 AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1092)
Q Consensus 595 ~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 655 (1092)
+...++. |++|++.+|+.+..+..+ ...+..++++|++..++.... .++++.||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888875 566787778877777765 334677889999887665433 4789999998765
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.61 E-value=1.9e-13 Score=147.96 Aligned_cols=249 Identities=12% Similarity=0.047 Sum_probs=177.5
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
..+..+..+.....+++|+|+|+.+++++..++.|..||..++ ... +..+...+.++++
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~ 76 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCL 76 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeE
Confidence 3345556666688999999999877889999999999999887 322 3346678999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCCccceEEeccc-ccceeEEEeeCCCCcEEEEEE----e-------------CCCc
Q 001358 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITC----G-------------DDKT 466 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~v~~~~~s~d~~~l~l~s~----~-------------~d~~ 466 (1092)
+|+|+++++...++.|.+||..+++.........+. ...+..++++|+|+ ++++. + ..+.
T Consensus 77 ~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 77 NKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcE
Confidence 999998888777789999999887643211111111 23567899999998 67763 2 1345
Q ss_pred EEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcC-CCCc---eEEecCCCCceEEEEEecCCC
Q 001358 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGA---RVDYDAPGLGCTRMAYSANGR 542 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~---~~~~~~~~~~i~~~~~s~dg~ 542 (1092)
|..++.. ++ +..+..+......++|+ ++++.+++.+.++.|.+|++. .+.. ...+......+..++++++|+
T Consensus 155 l~~~~~~-g~-~~~~~~~~~~~~gi~~s--~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 155 VFRLAPD-GT-LSAPIRDRVKPNGLAFL--PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL 230 (296)
T ss_dssp EEEECTT-SC-EEEEECCCSSEEEEEEC--TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred EEEECCC-CC-EEEeecCCCCCccEEEC--CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence 6666654 44 44455566677888884 466777778888999999997 3332 223333444567899999998
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEE-cCCCCEEEEEeCCCeEEEEECCCCce
Q 001358 543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1092)
..++. .+.|.+||.. ++.+..+..+. . +.+++| .|+++.|++++.+ .+..++..+..+
T Consensus 231 l~v~~------~~~v~~~~~~-g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 231 IWASA------GDGVHVLTPD-GDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEEE------TTEEEEECTT-SCEEEEEECSS---C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred EEEEc------CCeEEEECCC-CCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 76665 2359999986 77777777666 4 888999 5898999998876 455566666544
No 185
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=3.9e-09 Score=130.62 Aligned_cols=588 Identities=12% Similarity=0.105 Sum_probs=335.7
Q ss_pred CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|.++.-.++|...+ |+.+| +..||-.+ ... +........ . ..-....|.++...++|..|-+|
T Consensus 19 n~V~~I~qD~~G~lWi--gT~~G-L~ryDG~~---f~~-----~~~~~~~~~--~--~~l~~n~I~~i~~d~~g~~lWig 83 (781)
T 3v9f_A 19 NYVLSITQDKQGFLWF--ATEEG-LNKFDGTR---FIT-----YYKEEQSSS--V--QSITGNELNEVYTDPVQPVIWIA 83 (781)
T ss_dssp SBEEEEEECTTSCEEE--EESSC-EEEECSSS---EEE-----ECCCSSCSS--S--CCCSCSCEEEEEECSSSSEEEEE
T ss_pred CEeEEEEECCCCCEEE--ccCCc-CccccCCc---eEE-----EEcCCCCCc--c--ccccccccceEEEcCCCCEEEEE
Confidence 4899999999996444 44544 66676332 211 110000000 0 00023569999999988845567
Q ss_pred eCCCEEEEEEccCCCCccceEEec-----c---cccceeEEEeeC--CCCcEEEEEEeCCCcEEEEECCCCceeEEEec-
Q 001358 415 YSKHIVQLYAYHGGSDARQQLEID-----A---HVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG- 483 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~-----~---h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~- 483 (1092)
+.++-+..||..+++.. .+. . ....|.++.... ++. +..++.++.|..+|..+++.. .+..
T Consensus 84 t~~~Gl~~~d~~~~~f~----~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~-~~~~~ 155 (781)
T 3v9f_A 84 TQRAGLNAYNYETQSFS----VYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFT-HYNKS 155 (781)
T ss_dssp ESSSCEEEEETTTTEEE----EECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEE-EESTT
T ss_pred eCCCCcceECCCCCeEE----eeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEE-eeccC
Confidence 77734999998875421 121 0 123588888877 665 444554556889998776543 2321
Q ss_pred -----CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-------CCCCceEEEEEecCCCEEEEEecCC
Q 001358 484 -----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 484 -----~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
....|.++... .++ .|..++.++-+..||..+........ .....|.++...++|...+...
T Consensus 156 ~~~~l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~--- 229 (781)
T 3v9f_A 156 TVPALPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS--- 229 (781)
T ss_dssp TCTTCSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET---
T ss_pred cccCCCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC---
Confidence 12346666553 344 45556666567888876654322111 1234688898888888766542
Q ss_pred CCceeEEEEeCCCCeEEEEEeec----cccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe-------CC-
Q 001358 552 EGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-------AG- 619 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-------~~- 619 (1092)
. -+.+||..+++........ ......|.++...+++. +..|+..+-|.++|..++....... ..
T Consensus 230 --~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~ 305 (781)
T 3v9f_A 230 --K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGD 305 (781)
T ss_dssp --T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCS
T ss_pred --C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCC
Confidence 2 3899998877654332211 11235789998887764 6667765678899988765432221 10
Q ss_pred ----CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCC
Q 001358 620 ----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1092)
Q Consensus 620 ----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (1092)
-....|.++...++|. |.+|+.++-|..++........ ... .+
T Consensus 306 ~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~----------~~--------------------- 352 (781)
T 3v9f_A 306 NNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSY----------SP--------------------- 352 (781)
T ss_dssp STTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC----------------------------------
T ss_pred CCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-ecc----------Cc---------------------
Confidence 1123477788888776 5567766778777765432111 100 00
Q ss_pred CCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccc
Q 001358 696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 775 (1092)
Q Consensus 696 ~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~ 775 (1092)
.. ..+.......|.++...++|.. ..++.++-+..|+......
T Consensus 353 -~~----------------------------~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~------- 395 (781)
T 3v9f_A 353 -TQ----------------------------MNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVA------- 395 (781)
T ss_dssp --C----------------------------CCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEE-------
T ss_pred -cc----------------------------cccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeE-------
Confidence 00 0000002345778888888874 4455444566665322110
Q ss_pred cccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEec--CCCCCeEEEEEcC
Q 001358 776 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNP 853 (1092)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~ 853 (1092)
..+.... ......|.+++..++|.+.+...++.+..++..+++...... .....|.+++..+
T Consensus 396 -----~~~~~~~-----------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 459 (781)
T 3v9f_A 396 -----IYNKENR-----------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK 459 (781)
T ss_dssp -----ECC----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT
T ss_pred -----EEccCCC-----------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC
Confidence 0000000 014467889999888887775546778899987765433221 2346789999887
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCceeeEeeccc-----cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec
Q 001358 854 HDNNVIAIGMDDSTILIYNARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT 928 (1092)
Q Consensus 854 ~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~ 928 (1092)
++.+ ..|+. +-+..||..+++........ ...|.++...++|.+.+.....| |..||..+++... +..
T Consensus 460 -~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~ 532 (781)
T 3v9f_A 460 -NKKI-WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQ 532 (781)
T ss_dssp -TSEE-EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECT
T ss_pred -CCCE-EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccC
Confidence 6654 44665 55889998876543322212 46799999999988766443345 7888887654222 222
Q ss_pred CCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccC---CCcCEEEEEEecCCCEEEEEeCCCcEEEE
Q 001358 929 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 929 ~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~s~Dg~i~vw 1005 (1092)
..+. ....|.++...++|.+.+++.+|-+..||..+++... +... ....|.++...++|.+.++ +..| |..+
T Consensus 533 ~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~ 607 (781)
T 3v9f_A 533 YEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCY 607 (781)
T ss_dssp TTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEE
T ss_pred CCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEE
Confidence 2221 1246889999999998777664444888887665332 1111 1346788999999987665 4555 7778
Q ss_pred ECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358 1006 EASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1006 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
+..++... .+....-++.. ....-++..++ + ..|..|+.+| +..++..
T Consensus 608 ~~~~~~~~-~~~~~dGl~~~----~f~~~~~~~~~-~-G~l~~g~~~G-l~~f~p~ 655 (781)
T 3v9f_A 608 ITSKKCFY-TYDHSNNIPQG----SFISGCVTKDH-N-GLIYFGSING-LCFFNPD 655 (781)
T ss_dssp ETTTTEEE-EECGGGTCCSS----CEEEEEEEECT-T-SCEEEEETTE-EEEECSC
T ss_pred ECCCCceE-EecccCCcccc----ccccCceEECC-C-CEEEEECCCc-eEEEChh
Confidence 88766543 33322222221 22223455665 3 4577788887 4556653
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=1.4e-13 Score=168.73 Aligned_cols=250 Identities=10% Similarity=-0.009 Sum_probs=172.5
Q ss_pred cCCCCceEEeecCCCceEEEEEcCcC----cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+|+..+..++|||||++++.+.+.+| +|++||+.+|+.+.. . + +...+..++||||
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wspD 181 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHD 181 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTT
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEeC
Confidence 45557889999999995444433333 899999999986642 0 1 1123667999999
Q ss_pred CCEEEEEeCCCE----------------EEEEEccCCCCcc-ceEEecccccceeEEEeeCCCCcEEEEEEeC-----CC
Q 001358 408 GSLLGVAYSKHI----------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DK 465 (1092)
Q Consensus 408 g~~las~~~d~~----------------i~iwd~~~~~~~~-~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-----d~ 465 (1092)
|+.|+.++.++. |++|++.++.... .......|...+..++|||||++ |+.++. +.
T Consensus 182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVN 259 (710)
T ss_dssp SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCC
T ss_pred CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCcc
Confidence 999999987765 9999998875321 11122235566889999999995 444432 57
Q ss_pred cEEEEECCC------Cc-eeEEEecCCcceEEEeecccCCccEEEEEecC----CeEEEEEcCCCCc--eEEecCCC--C
Q 001358 466 TIKVWDAVT------GS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA--RVDYDAPG--L 530 (1092)
Q Consensus 466 ~i~vwd~~~------~~-~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~--~~~~~~~~--~ 530 (1092)
.|.+||+.+ +. ....+..+...+... |++ +|..|+..+.. +.|.+||+.+... ...+..+. .
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 336 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD 336 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred EEEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence 899999987 53 466676676666543 433 55555555443 3699999987652 23333333 3
Q ss_pred ceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCeEEEEE
Q 001358 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWD 606 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd 606 (1092)
.+..++|++++..+++... ++...|++|++.+|+.++.+..+. +.+..+.++|+++.++... ..++++.||
T Consensus 337 ~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 337 VLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred eEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC---ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 6788899877766666654 335678999987888777777654 7788899999987776432 457899999
Q ss_pred CCCCc
Q 001358 607 MNKVQ 611 (1092)
Q Consensus 607 ~~~~~ 611 (1092)
+.+++
T Consensus 412 ~~tg~ 416 (710)
T 2xdw_A 412 LTKEE 416 (710)
T ss_dssp TTSSS
T ss_pred CCCCc
Confidence 99877
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.60 E-value=3.9e-13 Score=149.35 Aligned_cols=285 Identities=11% Similarity=0.040 Sum_probs=175.6
Q ss_pred ceEEEEEcCCCCEEEEEe---------CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC---Ce--
Q 001358 580 SVSVVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE---NR-- 645 (1092)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d---g~-- 645 (1092)
.+....+ +|++++... .++.|++||+.+++.... ..+..++|+|||++|+.++.+ +.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 4556666 777776542 257799999998875433 236889999999999987754 33
Q ss_pred EEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCcccee
Q 001358 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1092)
Q Consensus 646 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 725 (1092)
|.+|++.+++......
T Consensus 87 l~~~~~~~g~~~~l~~---------------------------------------------------------------- 102 (347)
T 2gop_A 87 IWVADLETLSSKKILE---------------------------------------------------------------- 102 (347)
T ss_dssp EEEEETTTTEEEEEEE----------------------------------------------------------------
T ss_pred EEEEECCCCceEEEEc----------------------------------------------------------------
Confidence 6666666543221110
Q ss_pred cccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCe
Q 001358 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805 (1092)
Q Consensus 726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v 805 (1092)
... +..++|+|||+.|+.++.+.. .. . ....+
T Consensus 103 -------~~~-~~~~~wspdg~~l~~~~~~~~-------~~---------------------~------------~~~~~ 134 (347)
T 2gop_A 103 -------AKN-IRSLEWNEDSRKLLIVGFKRR-------ED---------------------E------------DFIFE 134 (347)
T ss_dssp -------ESE-EEEEEECTTSSEEEEEEECCC-------C----------------------------------------
T ss_pred -------CCC-ccceeECCCCCEEEEEEccCC-------Cc---------------------C------------CcEEE
Confidence 112 677889999998887765410 00 0 00011
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-------eEEEEEcCCcee
Q 001358 806 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-------TILIYNARSSEV 878 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-------~v~iwd~~~~~~ 878 (1092)
..+.+..+|.-+.......|.+||+.+++.+..+.. . .+..++|+| |+ +++++..++ ...||.+.+++.
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred cccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCce
Confidence 122233344332222235699999998887455544 3 788999999 78 888776542 344544445553
Q ss_pred eEeeccccCCeEEEEEcCCCCEEEEEeCCC--------cEEEEEcCCCceeeeeeeecCCCCcCCCCCceE-EEEecCCC
Q 001358 879 ISKLEGHSKRVTGLVFSDALNILVSSGGDA--------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQT 949 (1092)
Q Consensus 879 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~s~dg~ 949 (1092)
..+..+ ..+..+ ||||++|+.++.++ .|.+|| +++. .....++. ..+.. ++|+ ||
T Consensus 211 -~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-----~~l~~~~~---~~~~~~~~~s-dg- 274 (347)
T 2gop_A 211 -EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-----MGILDEVD---RGVGQAKIKD-GK- 274 (347)
T ss_dssp -EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-----EESSTTCC---SEEEEEEEET-TE-
T ss_pred -EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-----EeccccCC---cccCCccEEc-Cc-
Confidence 444445 556554 99999998887553 577777 4331 22222222 24665 8999 88
Q ss_pred EEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcE-EEEECCCCc
Q 001358 950 RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEASNLE 1011 (1092)
Q Consensus 950 ~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i-~vwd~~~~~ 1011 (1092)
++++ ..++.++|| +.+++... +. .+...|.+++|+| .++++++.++.. .+|.++ ++
T Consensus 275 ~~~~~~~~~~~~l~-~~~g~~~~-~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 275 VYFTLFEEGSVNLY-IWDGEIKP-IA-KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp EEEEEEETTEEEEE-EESSSEEE-EE-CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred EEEEEecCCcEEEE-EcCCceEE-Ee-cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 6666 577889999 87665433 23 3477899999999 688888877765 888887 54
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.58 E-value=1.1e-12 Score=139.16 Aligned_cols=245 Identities=12% Similarity=0.104 Sum_probs=179.7
Q ss_pred EEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCC-CcEEEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001358 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1092)
Q Consensus 349 llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 427 (1092)
+|++++.++.|.+||.++|+.+.. +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 789999999999999999998765 33344 4788999999999998 35677999999 7
Q ss_pred CCCccceEEeccc-ccceeEEEeeCCCCcEEEEEEeC-CCcEEEEECCCCceeEEEecC------CcceEEEeecccCCc
Q 001358 428 GSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENI 499 (1092)
Q Consensus 428 ~~~~~~~~~l~~h-~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~ 499 (1092)
|+.+. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+..+... ......+++ .++|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 76554 34443 34688999999999 7777776 778888884 78888777521 122333333 5678
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc--
Q 001358 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-- 577 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-- 577 (1092)
.++++...++.|..||.+ ++.+..+.... ...++.+.++|+.++++.. .+.|..+|..+|+.+..+......
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999988 78777776643 4556778899999988764 457999999999999988754311
Q ss_pred -CCceEEEEEcCCCCEEEEEeCC--------CeEEEEEC-CCCceEEEEeCCCCCCCCceEE
Q 001358 578 -HNSVSVVHFDTAKDQILAAGDD--------HVIKIWDM-NKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 578 -~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
-..+..+...++++.+++.+.. +..+++.+ .+|+.+..+........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 1237888889999888776421 23345555 4677777776665555555544
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.58 E-value=3.6e-13 Score=147.57 Aligned_cols=278 Identities=10% Similarity=-0.013 Sum_probs=191.0
Q ss_pred CcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccce
Q 001358 355 NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434 (1092)
Q Consensus 355 ~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~ 434 (1092)
.+++|.+||.++++........ . . -.........+++. +++..++...++.|.+||..+++.+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~----~---n------~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~-- 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYR----A---N------GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG-- 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHH----H---H------SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE--
T ss_pred CCceEEEEECCCCEEhhhhHhh----h---c------CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE--
Confidence 3789999999998765421000 0 0 00122446777774 45555556667899999999987655
Q ss_pred EEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC-----cceEEEeecccCCccEEEEEe-cC
Q 001358 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-----APVYSLCPHAKENIHFIFSIS-VD 508 (1092)
Q Consensus 435 ~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~~~l~s~~-~d 508 (1092)
++. .......++++++++ ++++...++.|.+||..+++....+.... .....+++ . ++.++++.. .+
T Consensus 79 -~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 79 -RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp -EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred -EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 333 335688999999985 66666578999999999999887776433 13455666 2 344444444 48
Q ss_pred CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCC------ceeEEEEeCCCCeEEEEEeeccccCCceE
Q 001358 509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVS 582 (1092)
Q Consensus 509 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 582 (1092)
+.|.++|..+.+....+... .....++++|+|++++++...... .+.|+++|..+++....+.... .....
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~ 228 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPS 228 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCce
Confidence 99999999988776665543 244678999999977766432100 2679999999999887775432 23688
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEEE----eCCCeEEEEECCCCCee
Q 001358 583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVI----ANENRIKILETPESNSV 657 (1092)
Q Consensus 583 ~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~----~~dg~i~iw~~~~~~~~ 657 (1092)
.++++|+++.++++.. .|.+||..+++................++++| ++.++++. ..++.|.+|+.. ++.+
T Consensus 229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp EEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred eEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 9999999999988765 89999999887632111111123467899999 55555555 568999999998 7777
Q ss_pred eecc
Q 001358 658 DAAG 661 (1092)
Q Consensus 658 ~~~~ 661 (1092)
..+.
T Consensus 306 ~~i~ 309 (328)
T 3dsm_A 306 DEFY 309 (328)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=2e-13 Score=166.68 Aligned_cols=248 Identities=11% Similarity=-0.007 Sum_probs=166.1
Q ss_pred CCCCcEEEEEECCCCCEEEEE-----eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCc--
Q 001358 394 DPGVSVNRVVWSPDGSLLGVA-----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~-----~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~-- 466 (1092)
+|...+..++|||||++||.+ +.+.+|++||+.+|+.+... .+... ....++|+|||+ .|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~--~l~~~~~d~~~~ 192 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSK--GFYYEWLPTDPS 192 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSS--EEEEEECCCCTT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCC--EEEEEEecCCCC
Confidence 566789999999999999954 34468999999998755110 11111 126899999999 6777777765
Q ss_pred -----------EEEEECCCCc----eeEEEecCCcceEEEeecccCCccEEEEEecCC----eEEEEEcCCCCceEEecC
Q 001358 467 -----------IKVWDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGARVDYDA 527 (1092)
Q Consensus 467 -----------i~vwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~ 527 (1092)
|++|++.++. .+.....|...+..+.+ ++||++|+.++.++ .|.+|+...+. ...+..
T Consensus 193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~ 269 (695)
T 2bkl_A 193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL--SRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVK 269 (695)
T ss_dssp SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE--CTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEE
T ss_pred CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE--CCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeec
Confidence 9999999886 33333345566777777 55778887777665 56666554443 333333
Q ss_pred CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE---EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001358 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
+...+....+ ++|. ++..+.....+..|++||+.++.. ...+..+. ...+..++++ ++..+++...|+..++
T Consensus 270 ~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 270 GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS--SASLLSVSIV-GGHLSLEYLKDATSEV 344 (695)
T ss_dssp CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC--CCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 4444555555 6777 665554333467899999988753 33333321 2457888888 6677788889998888
Q ss_pred EECC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCC
Q 001358 605 WDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1092)
Q Consensus 605 wd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 655 (1092)
|.+. ++.....+..+. ...+..++++|+++.++.... .++|++||+.+++
T Consensus 345 ~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 345 RVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8654 455556555432 234667788999987775443 4789999998775
No 191
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=3.2e-12 Score=141.00 Aligned_cols=246 Identities=8% Similarity=-0.029 Sum_probs=168.9
Q ss_pred cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
......+.++...+.+++|+|+|+ +++++..++.|.+||..+++.... ...+...+.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~i~ 93 (333)
T 2dg1_A 34 AEPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIK 93 (333)
T ss_dssp CEEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEE
T ss_pred cceeEEEeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE-------------------eeCCCCCcceEE
Confidence 345566777777889999999998 788888889999999998875432 223567899999
Q ss_pred ECCCCCEEEEEeCC----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC------CCcEEEEECC
Q 001358 404 WSPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAV 473 (1092)
Q Consensus 404 ~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~ 473 (1092)
|+|+|+++++...+ +.|.+||..++...... .-..+...+.+++++|+|+ ++++... .+.|..+|..
T Consensus 94 ~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~ 170 (333)
T 2dg1_A 94 IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPD 170 (333)
T ss_dssp ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTT
T ss_pred ECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCC
Confidence 99999988887666 68999999887543211 1012445789999999998 5665543 3556667766
Q ss_pred CCceeEEEecCCcceEEEeecccCCccEE-EEEecCCeEEEEEcCCC-CceEE------ecCC-CCceEEEEEecCCCEE
Q 001358 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSL-GARVD------YDAP-GLGCTRMAYSANGRRL 544 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~-~~~~~------~~~~-~~~i~~~~~s~dg~~l 544 (1092)
+++... +..+...+..++++ +++..+ ++.+.++.|.+|+++.. ..... .... ...+..++++++|+..
T Consensus 171 ~~~~~~-~~~~~~~~~~i~~~--~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~ 247 (333)
T 2dg1_A 171 FRTVTP-IIQNISVANGIALS--TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLY 247 (333)
T ss_dssp SCCEEE-EEEEESSEEEEEEC--TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEE
T ss_pred CCEEEE-eecCCCcccceEEC--CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEE
Confidence 555433 32333456778874 466644 55566889999999642 22211 1111 1367889999999977
Q ss_pred EEEecCCCCceeEEEEeCCCCeEEEEEeeccc---cCCceEEEEEcCCCCEEEEEeCCC
Q 001358 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGDDH 600 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~dg 600 (1092)
++... ++.|.+||. +++.+..+..... +...+.+++|+|+++.|++++.++
T Consensus 248 v~~~~----~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 248 VAMYG----QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEET----TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEcC----CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 76643 456999998 5666666654431 011578999999988887766554
No 192
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.57 E-value=1.6e-11 Score=132.98 Aligned_cols=285 Identities=11% Similarity=0.057 Sum_probs=195.2
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCC
Q 001358 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
+..+...+.+++++|+|+ +.++...++.|.+||.. ++.... . +..+...+.+++++++|+
T Consensus 10 ~~~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~ 69 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY-P-----------------LPTPDAKVMCLTISSDGE 69 (299)
T ss_dssp CCSSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE-E-----------------CSSTTCCEEEEEECTTSC
T ss_pred CCCcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe-c-----------------CCcccCceeeEEECCCCC
Confidence 445556899999999998 56666667899999988 543321 0 223457899999999999
Q ss_pred EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE-EecCCcce
Q 001358 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPV 488 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v 488 (1092)
++++...++.|..||.. ++ ... ..+......+.++++.++|. ++++...++.|.+||. +++.... ...+...+
T Consensus 70 l~v~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 70 VWFTENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp EEEEETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEEeCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 88887778889999986 32 221 12223455789999999998 6777777889999998 6654432 22344567
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001358 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
..+++. +++.++++...++.|..||. +++.... .......+..++++++|+..++... .+.|..||. +++.
T Consensus 144 ~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 144 SFITLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEI 215 (299)
T ss_dssp EEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCE
T ss_pred ceEEEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcE
Confidence 788874 46677777777889999998 4443322 3334456889999999986665432 456999999 6664
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001358 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
.. +.... ....+..++++++++..++...++.|.+||. ++. +..+........+.++++ ++|.+.++.. .+.+.
T Consensus 216 ~~-~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~ 289 (299)
T 2z2n_A 216 TE-FKIPT-PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG 289 (299)
T ss_dssp EE-EECSS-TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred EE-EECCC-CCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence 43 32211 2357889999999886666557889999998 454 334433333345788999 8887666654 56777
Q ss_pred EEECCCC
Q 001358 648 ILETPES 654 (1092)
Q Consensus 648 iw~~~~~ 654 (1092)
.++..+.
T Consensus 290 ~~~~~~~ 296 (299)
T 2z2n_A 290 KLTLIKD 296 (299)
T ss_dssp EEEEC--
T ss_pred EEEcCcc
Confidence 7776543
No 193
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.56 E-value=4.3e-12 Score=137.81 Aligned_cols=204 Identities=13% Similarity=0.079 Sum_probs=142.4
Q ss_pred eeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeeE
Q 001358 805 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS 880 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~ 880 (1092)
...++|+|||+++.++. ++.|.++|+.+++.+.++.... . ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 44688999999888775 4789999999999999886432 1 233433 566777888899999999876 55432
Q ss_pred eeccc----cCCeE-EEEEc-CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC------CCCcCCCCCceEEEEecCC
Q 001358 881 KLEGH----SKRVT-GLVFS-DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 881 ~l~~h----~~~V~-~l~~s-pdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~s~dg 948 (1092)
....+ ..++. ..+|. ++|++++ .+.+|.|.+.|+.++.......+... .+... +....+++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~ 291 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRAL 291 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTT
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCC
Confidence 22111 12222 24664 6775554 66789999999987643222222210 11111 234568889999
Q ss_pred CEEEEEe-----------CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC-EEEEE-eCCCcEEEEECCCCceEEe
Q 001358 949 TRFLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTS-FVDGTLSIHEASNLEVQCR 1015 (1092)
Q Consensus 949 ~~la~~~-----------d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~-s~Dg~i~vwd~~~~~~~~~ 1015 (1092)
+.+.+.. .+.|.++|+.+++.+..+..++ .+.+++||+|++ +|+++ ..++.|.++|..+++.+.+
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 9988842 1469999999999998877653 788999999997 66664 4589999999999999988
Q ss_pred ec
Q 001358 1016 IL 1017 (1092)
Q Consensus 1016 ~~ 1017 (1092)
+.
T Consensus 370 i~ 371 (386)
T 3sjl_D 370 VN 371 (386)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 194
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.56 E-value=6.2e-13 Score=144.41 Aligned_cols=288 Identities=14% Similarity=0.113 Sum_probs=194.3
Q ss_pred EEeecCCCceEEEEEcC----cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358 339 SMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 339 ~v~~spdg~~llasg~~----d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
.....||+++++++-.. ++.|.+.|..+++.+.... ....+ . +++||||++|+++
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~-------------------vG~~P-~-va~spDG~~lyVa 95 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-------------------GGFLP-N-PVVADDGSFIAHA 95 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-------------------ECSSC-E-EEECTTSSCEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE-------------------CCCCC-c-EEECCCCCEEEEE
Confidence 35667999876666554 6899999999998876421 12223 4 9999999999887
Q ss_pred e----------CCCEEEEEEccCCCCccceEEecc--c---ccceeEEEeeCCCCcEEEEEEe--CCCcEEEEECCCCce
Q 001358 415 Y----------SKHIVQLYAYHGGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSR 477 (1092)
Q Consensus 415 ~----------~d~~i~iwd~~~~~~~~~~~~l~~--h---~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~ 477 (1092)
+ .++.|.+||..+++.+..+. +.. + ...-..++|+|||++ ++.+. .++.|.++|+.+++.
T Consensus 96 n~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 96 STVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTTTEE
T ss_pred cccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCCCcE
Confidence 5 35789999999987665432 211 0 123557899999995 44443 378999999999999
Q ss_pred eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEec----CCCCceE-EEEEe-cCCCEEEEEecC
Q 001358 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYD----APGLGCT-RMAYS-ANGRRLFSCGTS 550 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~----~~~~~i~-~~~~s-~dg~~l~~~~~~ 550 (1092)
+.++..... ..+.|. ..+.+++.+.||.+.+.++.. ++...... ....++. ...|. ++|++++...
T Consensus 173 v~tI~v~g~----~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~-- 245 (386)
T 3sjl_D 173 KRMLDVPDC----YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 245 (386)
T ss_dssp EEEEECCSE----EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred EEEEECCCc----ceeecC-CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--
Confidence 998854221 111222 235677888899999999876 33322111 1112221 23554 6786665432
Q ss_pred CCCceeEEEEeCCCCe--EEEEEeec-------cccCCceEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCc
Q 001358 551 KEGESFLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQ 611 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~ 611 (1092)
.+.|++.|..++. ....+.-. .........++++++++.++.... .+.|.+.|+.+++
T Consensus 246 ---~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 246 ---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp ---TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred ---CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 4569999987664 33333200 000123345677999999988643 2579999999999
Q ss_pred eEEEEeCCCCCCCCceEEEccCCC-EEEEEe-CCCeEEEEECCCCCeeeecccc
Q 001358 612 LLTTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAAGVL 663 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 663 (1092)
.+..+.... .+..+++++|++ +|++.. .++.|.++|..+++.+..+...
T Consensus 323 v~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 323 RLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EEEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred EEEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 999987653 367999999997 666654 4899999999999888877643
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=1.4e-11 Score=136.49 Aligned_cols=203 Identities=10% Similarity=0.011 Sum_probs=141.4
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEe
Q 001358 806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 881 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 881 (1092)
..++++|||++|++++ ++.|.++| .+++.+.. +.... ++.+.|.+.+.+++.+.||.+.+++. +++....
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 4688999999998875 36799999 99988877 65322 24555645567777889999999999 8876633
Q ss_pred ec-----cccCC-eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC----cCCCCCceEEEEecCCCEE
Q 001358 882 LE-----GHSKR-VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV----MTLAPSETHIQFHKDQTRF 951 (1092)
Q Consensus 882 l~-----~h~~~-V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~l~~s~dg~~l 951 (1092)
.. ....+ .....+++++..++..+..+.+.+.|+.+........+...... .........++++||++.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 22 11122 23356777776665556788999999976542221222111100 0000124458899999988
Q ss_pred EEEe-----------CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceEEee
Q 001358 952 LLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 952 a~~~-----------d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~s-~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
.+.. .+.|.++|..+++.+..+..+ ....+++|+|||+ .++++. .++.|.+||+.+++.+.++
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 7742 247999999999998886543 3688999999999 777776 4899999999999999774
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=1.4e-11 Score=136.66 Aligned_cols=281 Identities=12% Similarity=0.011 Sum_probs=186.6
Q ss_pred eecCCCceEEEEEc-CcC---cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe-
Q 001358 341 DFHPVQHTLLLVGT-NVG---DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 415 (1092)
Q Consensus 341 ~~spdg~~llasg~-~d~---~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~- 415 (1092)
...|++++++++-. ... +|.++|..+++.+.. +.....+ .++|||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 44578875444433 223 889999999887643 2222223 899999999999986
Q ss_pred ---------CCCEEEEEEccCCCCccceEEec--cc---ccceeEEEeeCCCCcEEEEEEe--CCCcEEEEECCCCceeE
Q 001358 416 ---------SKHIVQLYAYHGGSDARQQLEID--AH---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 416 ---------~d~~i~iwd~~~~~~~~~~~~l~--~h---~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~ 479 (1092)
.++.|.+||..+.+.+.... +. .+ ...-..++|+|||++ |+.++ .++.|.++| .+++.+.
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~~--l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNAD--LLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCCE--EEEEecCCCCeEEEEE-CCCCEEe
Confidence 36789999999876555332 11 00 123457899999994 55544 257899999 9999887
Q ss_pred E-EecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-----CCCCc-eEEEEEecCCCEEEEEecCCC
Q 001358 480 S-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLG-CTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 480 ~-~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~-i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
. +... .. +.+.+... ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 162 ~~i~~~-~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 232 (373)
T 2mad_H 162 QLLSSP-TC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--- 232 (373)
T ss_pred EEcCCC-ce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence 7 6432 21 23333332 45677888999999999 665542221 11112 233566777666554443
Q ss_pred CceeEEEEeCCCCe--EEEEEeecc-------ccCCceEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceE
Q 001358 553 GESFLVEWNESEGA--IKRTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLL 613 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~ 613 (1092)
.+.+.+.|..++. .+..+.... ........+.++|+++.++++.. .+.|.++|..+++.+
T Consensus 233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 3468889987653 222222110 00123445789999998888653 357999999999999
Q ss_pred EEEeCCCCCCCCceEEEccCCC-EEEEEe-CCCeEEEEECCCCCeeee
Q 001358 614 TTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDA 659 (1092)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~ 659 (1092)
..+.... ....++|+|||+ +++++. .++.|.++|..+++.+..
T Consensus 312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 9997653 368999999999 677776 489999999999988766
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=1.2e-12 Score=141.59 Aligned_cols=238 Identities=11% Similarity=0.057 Sum_probs=168.7
Q ss_pred ecCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++++++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 445666788999999998 7777888899999999886 33 4556777899999999998 67777777899999
Q ss_pred ECCCCceeEEEecC----CcceEEEeecccCCccEEEEEec-----------------CCeEEEEEcCCCCceEEecCCC
Q 001358 471 DAVTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLYDSLGARVDYDAPG 529 (1092)
Q Consensus 471 d~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~l~s~~~-----------------dg~i~vwd~~~~~~~~~~~~~~ 529 (1092)
|..+++........ ...+..+++ +++|.++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~--d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCL--APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEE--CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEE--CCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 99888765443222 123556777 457778887321 2344444443 4444444555
Q ss_pred CceEEEEEecCCCEEEEEecCCCCceeEEEEeCC-CCeE---EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001358 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1092)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1092)
.....++|+|||+.+++... ++.|++|+.. +++. ...+.. ....+..++++++|+..++. ++.|.+|
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHFTV---EPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEECC---SSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEeeC---CCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 56789999999999844432 5679999986 5554 333411 23567789999999865555 7899999
Q ss_pred ECCCCceEEEEeCCCCCCCCceEEE-ccCCCEEEEEeCCCeEEEEECCCC
Q 001358 606 DMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
|.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus 243 ~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp CTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred CCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 986 777777775543 788999 5899999998876 4444555544
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=1.7e-12 Score=142.20 Aligned_cols=272 Identities=8% Similarity=0.032 Sum_probs=182.8
Q ss_pred cccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccC
Q 001358 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 785 (1092)
Q Consensus 706 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1092)
.++++.++|..+.+....................+++. +++.+++...++.+.+||..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~--------------------- 72 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDIN--------------------- 72 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETT---------------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECc---------------------
Confidence 36778888865433221110000001122345667764 45555555667888887643
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-eCCeEEEEEcCCceeeEEecCCC-----CCeEEEEEcCCCCCEE
Q 001358 786 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPS-----PTATSLAFNPHDNNVI 859 (1092)
Q Consensus 786 ~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~s~~d~~~l 859 (1092)
+++.+.... .......++++++++++++. .++.|.+||..+++....+.... .....+++ . +++++
T Consensus 73 -t~~~~~~i~-----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly 144 (328)
T 3dsm_A 73 -TFKEVGRIT-----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY 144 (328)
T ss_dssp -TCCEEEEEE-----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred -ccEEEEEcC-----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence 333333321 23567899999999655555 37999999999999887765433 14556777 3 56555
Q ss_pred EEEe-CCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC----------CcEEEEEcCCCceeeeeeeec
Q 001358 860 AIGM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----------AQIFVWDVDGWGIQTCRSLQT 928 (1092)
Q Consensus 860 asg~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D----------g~i~iwd~~~~~~~~~~~~~~ 928 (1092)
++.. .++.|.++|..+++.+..+... .....++++|+|++++++..+ +.|.++|..+++... .+..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~ 221 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF 221 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence 5554 4889999999999988877643 345689999999988877654 789999998876433 2222
Q ss_pred CCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeee-eccCCCcCEEEEEEec-CCCEEEEE----eCCCcE
Q 001358 929 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ-WFPISSVPISQATFSC-DCRMVFTS----FVDGTL 1002 (1092)
Q Consensus 929 ~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~-~~~~h~~~v~~l~fs~-dg~~l~t~----s~Dg~i 1002 (1092)
..+ .....++|+||++.|.++.. .|.+||..+++.... +...+......++++| +++++++. ..+++|
T Consensus 222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 222 14789999999999988654 999999998876432 2222246789999999 55666665 568899
Q ss_pred EEEECCCCceEEeec
Q 001358 1003 SIHEASNLEVQCRIL 1017 (1092)
Q Consensus 1003 ~vwd~~~~~~~~~~~ 1017 (1092)
.+||.. |+.+.++.
T Consensus 296 ~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTT-CCEEEEEE
T ss_pred EEECCC-CCEEEEEE
Confidence 999998 99888876
No 199
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=1.2e-08 Score=126.29 Aligned_cols=536 Identities=11% Similarity=0.038 Sum_probs=309.2
Q ss_pred CCceEEeecCCCc-eEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC--CCCEE
Q 001358 335 SSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLL 411 (1092)
Q Consensus 335 ~~V~~v~~spdg~-~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~l 411 (1092)
..|.++...++|. .++ |+.++.+..||..+++...- .. ... .. ..-....|.++...+ +|.+.
T Consensus 66 n~I~~i~~d~~g~~lWi--gt~~~Gl~~~d~~~~~f~~~-~~---~~~------~~--~~l~~~~i~~i~~d~~~~g~lw 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWI--ATQRAGLNAYNYETQSFSVY-QY---NPE------DP--QSLITNDVTHITSSVQAGKGLW 131 (781)
T ss_dssp SCEEEEEECSSSSEEEE--EESSSCEEEEETTTTEEEEE-CC---CTT------CS--SSCSCSCEEEEEECSSTTSEEE
T ss_pred cccceEEEcCCCCEEEE--EeCCCCcceECCCCCeEEee-cc---ccC------CC--CCcccCcceEEEecCccCCCEE
Confidence 3699999999997 443 45555799999887653221 00 000 00 000124688998887 66654
Q ss_pred EEEeCCCEEEEEEccCCCCccceEEec------ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe---
Q 001358 412 GVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--- 482 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~--- 482 (1092)
.++.++-|..||..+++.. .+. -....|.++...++|. +..++.++-|..||..+++...-..
T Consensus 132 -i~t~~~gl~~~~~~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~ 203 (781)
T 3v9f_A 132 -VCTYYRGIEYLDIATGKFT----HYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQ 203 (781)
T ss_dssp -EEESSSCEEEEETTTTEEE----EESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC---
T ss_pred -EEECCCCeeEEECCCCeEE----eeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCC
Confidence 4553334888998765321 121 1134588888888876 4446666568999988775432111
Q ss_pred ----cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEecCCCEEEEEecCC
Q 001358 483 ----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 483 ----~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
.....|.++.. +.++.+. .|+.+ -+.+||..+....... ......|.++...++|...+....
T Consensus 204 ~~~~l~~~~i~~i~~--d~~g~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-- 277 (781)
T 3v9f_A 204 NPNSLPGNDVRCIYK--DTNGNIW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATEL-- 277 (781)
T ss_dssp -----CCSSEEEEEE--CTTCCEE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESS--
T ss_pred CcccCCCCceeEEEE--cCCCCEE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCC--
Confidence 11345777765 3455444 45555 5788887654332211 112346889988888876654321
Q ss_pred CCceeEEEEeCCCCeEEEEEe-----------eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe---
Q 001358 552 EGESFLVEWNESEGAIKRTYQ-----------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--- 617 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~--- 617 (1092)
+-|.++|..++....... ........|.++...++|. +-.|+.++-|..++..++.......
T Consensus 278 ---~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~ 353 (781)
T 3v9f_A 278 ---NGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPT 353 (781)
T ss_dssp ---SCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----
T ss_pred ---CCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcc
Confidence 128889988765433221 0112246789999888775 6677777789999987655433211
Q ss_pred ----CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCC
Q 001358 618 ----AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 693 (1092)
Q Consensus 618 ----~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1092)
..-....|.+++..++|. |.+|+.++.|..|+..++... .+..
T Consensus 354 ~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~------------------------------- 400 (781)
T 3v9f_A 354 QMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI-YNKE------------------------------- 400 (781)
T ss_dssp CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE-CC---------------------------------
T ss_pred ccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE-EccC-------------------------------
Confidence 011123477788777776 556666666888876532110 0000
Q ss_pred CCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcc
Q 001358 694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 773 (1092)
Q Consensus 694 ~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~ 773 (1092)
+.......|.++...++|...+ ++.++-+..++....
T Consensus 401 -----------------------------------~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~------- 437 (781)
T 3v9f_A 401 -----------------------------------NRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK------- 437 (781)
T ss_dssp --------------------------------------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC-------
T ss_pred -----------------------------------CCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC-------
Confidence 0001234577788777887444 554444555543221
Q ss_pred cccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCC-----CCCeEE
Q 001358 774 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP-----SPTATS 848 (1092)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~-----~~~i~~ 848 (1092)
. ....... ......|.++...++|.+.+... +.+..+|..+++........ ...|.+
T Consensus 438 ---------------~-~~~~~~~-~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (781)
T 3v9f_A 438 ---------------K-FQIIELE-KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRS 499 (781)
T ss_dssp ---------------E-EEECCST-TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred ---------------c-EEEeccC-CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEE
Confidence 1 1111000 01346788999888887666554 67899998876554333222 357899
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecc---ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001358 849 LAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS 925 (1092)
Q Consensus 849 l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 925 (1092)
++..+ ++.+.+ |+.++-+..||..+++...-... ....|.++...++|.+.++. .+|.|..||..+++.. .
T Consensus 500 i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~---~ 573 (781)
T 3v9f_A 500 IAQDS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQ---V 573 (781)
T ss_dssp EEECT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCE---E
T ss_pred EEEcC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEE---E
Confidence 99988 676555 56544478898877653322111 24578999999998876654 4775488888775432 2
Q ss_pred eecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeecc--C---CCcCEEEEEEecCCCEEEEEeCCC
Q 001358 926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--I---SSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus 926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~--~---h~~~v~~l~fs~dg~~l~t~s~Dg 1000 (1092)
.....+-. ...|.++...++|.+.+++. +.|..++..+..... +.. + ..-...++...+||++++ |+.+|
T Consensus 574 ~~~~~gl~--~~~i~~i~~d~~g~lW~~t~-~Gl~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G 648 (781)
T 3v9f_A 574 FQRKEGLP--NTHIRAISEDKNGNIWASTN-TGISCYITSKKCFYT-YDHSNNIPQGSFISGCVTKDHNGLIYF-GSING 648 (781)
T ss_dssp ECGGGTCS--CCCCCEEEECSSSCEEEECS-SCEEEEETTTTEEEE-ECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE
T ss_pred ccccCCCC--CceEEEEEECCCCCEEEEcC-CceEEEECCCCceEE-ecccCCccccccccCceEECCCCEEEE-ECCCc
Confidence 22222221 13578899999998777654 447778877655432 111 1 111234677788898666 66777
Q ss_pred cEEEEECC
Q 001358 1001 TLSIHEAS 1008 (1092)
Q Consensus 1001 ~i~vwd~~ 1008 (1092)
+..++..
T Consensus 649 -l~~f~p~ 655 (781)
T 3v9f_A 649 -LCFFNPD 655 (781)
T ss_dssp -EEEECSC
T ss_pred -eEEEChh
Confidence 5556654
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=3.4e-13 Score=164.63 Aligned_cols=250 Identities=9% Similarity=-0.073 Sum_probs=163.9
Q ss_pred cCCCCceEEeecCCCceEEEEE----cCcCcEEEEecCCCCce-eeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg----~~d~~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
+|+..+..++|||||++++.+. +.+.+|++||+.+|+.+ .. . +.+. ....++|||
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wsp 177 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTP 177 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEec
Confidence 5666799999999999544333 33467999999999865 21 0 1111 125789999
Q ss_pred CCCEEEEEeCCCE-------------EEEEEccCCCCcc-ceEEecccccceeEEEeeCCCCcEEEEEEeCCC----cEE
Q 001358 407 DGSLLGVAYSKHI-------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIK 468 (1092)
Q Consensus 407 dg~~las~~~d~~-------------i~iwd~~~~~~~~-~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~----~i~ 468 (1092)
||+.|+.++.+.. |++|++.++.... .......|...+..+.|||||++ |+.++.++ .|.
T Consensus 178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVY 255 (695)
T ss_dssp TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEE
T ss_pred CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEE
Confidence 9999999988765 9999999875321 22223345567899999999995 44444344 677
Q ss_pred EEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCC-CCceEEEEEecCC
Q 001358 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAP-GLGCTRMAYSANG 541 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~---~~~~~~~-~~~i~~~~~s~dg 541 (1092)
+||..+++ ...+..+...+....+ +++.+++... .++.|.+||+.+... ...+... ...+..++++ ++
T Consensus 256 ~~~~~~~~-~~~l~~~~~~~~~~~~---~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~ 330 (695)
T 2bkl_A 256 WKRPGEKD-FRLLVKGVGAKYEVHA---WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG 330 (695)
T ss_dssp EECTTCSS-CEEEEECSSCCEEEEE---ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT
T ss_pred EEcCCCCc-eEEeecCCCceEEEEe---cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC
Confidence 77765554 4455556555555554 2444545444 257899999987653 3333333 4467888888 66
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCeEEEEECCCCceE
Q 001358 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQLL 613 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~~ 613 (1092)
..+++... ++...|++++.. ++..+.+..+. ...+..+.++|+++.++... ..++|++||+.+++..
T Consensus 331 ~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 331 HLSLEYLK--DATSEVRVATLK-GKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp EEEEEEEE--TTEEEEEEEETT-CCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEEEEE--CCEEEEEEEeCC-CCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 66666554 334556666654 55555555442 25677788899988776432 3578999999988743
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.52 E-value=2.4e-12 Score=136.40 Aligned_cols=247 Identities=9% Similarity=0.001 Sum_probs=175.8
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecccc-CCe
Q 001358 813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRV 889 (1092)
Q Consensus 813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V 889 (1092)
.+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| ++++++ +.++.|+.||. +|+.+.++..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456777776 6999999999999999998766 4789999999 888888 45788999999 899999988753 578
Q ss_pred EEEEEcCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecC-CCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCC
Q 001358 890 TGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE 966 (1092)
Q Consensus 890 ~~l~~spdg~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~ 966 (1092)
.++.+.+||+++++.+. ++.|..+|.+ ++......+... .+.. .....+++.++|+++++. .++.|..||..
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 89999999999999887 7777777763 443322222111 1111 135567889999999985 67899999998
Q ss_pred ceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEE
Q 001358 967 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1046 (1092)
Q Consensus 967 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l 1046 (1092)
|+.+..+.. ...+.++.+.++|..+++++.+++|..+|..+|+.+.++..... +.. .-..+..++..+ ++..+
T Consensus 155 G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~---~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 155 GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-EGV---QLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-BSC---CCSEEEEEEECT-TSCEE
T ss_pred CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-CCc---cccccccceEcC-CCCEE
Confidence 888877543 24566788899999999998888999999999999988863221 110 112344566666 46766
Q ss_pred EEEeCC--------CcEEEEecC-CCCCccccCCCCCc
Q 001358 1047 AVGLTN--------GEVYVIEPN-EPGDTWAVLPPDEI 1075 (1092)
Q Consensus 1047 ~~~~~d--------g~v~~w~~~-~~~~~~~~~~~~~~ 1075 (1092)
++.+.. +..+++++. +.+-.|+.....+.
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~ 265 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKF 265 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTS
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcccc
Confidence 666421 234566663 33444655444443
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.51 E-value=9.6e-11 Score=126.70 Aligned_cols=241 Identities=10% Similarity=0.017 Sum_probs=170.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..+...+.+++++++|++.++...++.|.+||.. ++. ... .+..+...+.++++.++|. ++++...++.|..||
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEY-PLPTPDAKVMCLTISSDGE--VWFTENAANKIGRIT 84 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEe-cCCcccCceeeEEECCCCC--EEEeCCCCCeEEEEC
Confidence 44566789999999999988877667899999988 542 211 2223456799999999998 677766688999999
Q ss_pred CCCCceeEEEe--cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEecCCCEEEEEe
Q 001358 472 AVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 472 ~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
.. ++. ..+. .....+..+++. +++.++++...++.|.+||. ++.... ........+..+++.++|+..++..
T Consensus 85 ~~-g~~-~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 159 (299)
T 2z2n_A 85 KK-GII-KEYTLPNPDSAPYGITEG--PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTEN 159 (299)
T ss_dssp TT-SCE-EEEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEET
T ss_pred CC-CcE-EEEeCCCcCCCceeeEEC--CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeC
Confidence 76 433 3332 244567788874 46677777777889999988 333322 2333445788999999998776653
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceE
Q 001358 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1092)
. .+.|..||. +++.... .... ....+..+++.+++...++...++.|.+||. +++... +........+..+
T Consensus 160 ~----~~~i~~~~~-~g~~~~~-~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i 230 (299)
T 2z2n_A 160 Q----NNAIGRITE-SGDITEF-KIPT-PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAI 230 (299)
T ss_dssp T----TTEEEEECT-TCCEEEE-ECSS-TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEE
T ss_pred C----CCEEEEEcC-CCcEEEe-eCCC-CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeE
Confidence 2 456999998 6665442 1111 1256889999999887666667889999999 666443 3333333457899
Q ss_pred EEccCCCEEEEEeCCCeEEEEEC
Q 001358 629 CFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
+++++|+++++...++.|..|+.
T Consensus 231 ~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 231 TAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EECSTTCEEEEETTTTEEEEEET
T ss_pred EECCCCCEEEeccCCceEEEECC
Confidence 99999987666657789999987
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.50 E-value=2.6e-12 Score=136.88 Aligned_cols=240 Identities=8% Similarity=-0.042 Sum_probs=166.5
Q ss_pred CceEEeecCCCceEEE-EEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358 336 SPMSMDFHPVQHTLLL-VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 336 ~V~~v~~spdg~~lla-sg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
...+++++|+|+ +++ +...++.|.+||..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 778999999998 666 556778999999766543211 11233567889999999966665
Q ss_pred eCCCEEEEEEccCCCCccceEEec-ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEee
Q 001358 415 YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 493 (1092)
. ++.|.+||..++... .+. .....+..++++++|+ ++++...++.|.+|+..+.............+..+++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 888999998775422 122 2235688999999998 6777777889999986655443322233345677777
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee
Q 001358 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1092)
. +++.++++...++.|.+||................+..++++++|..+++... ++.|.+||..+.........
T Consensus 158 ~--~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 D--NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp C--TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEECCCC
T ss_pred e--CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCcceeeccC
Confidence 5 46677777777889999998766544333333356889999999966665532 45699999876544332212
Q ss_pred ccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001358 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
. ...+.+++++++++.+++...++.|++++....+
T Consensus 232 ~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 232 G---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp S---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred C---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 1 2568999999999877888889999999987654
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.50 E-value=1.7e-12 Score=159.53 Aligned_cols=247 Identities=9% Similarity=0.050 Sum_probs=164.0
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCC-----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCc--
Q 001358 394 DPGVSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~-- 466 (1092)
+|...+..++|||||++||.++.+ ..|++||+.+|+.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 344578899999999999988654 4699999999875431 112223468899999 8 4555555443
Q ss_pred ------------EEEEECCCCce--eEEEec--CCcceEEEeecccCCccEEEEEecCC-----eEEEEEcCCC--CceE
Q 001358 467 ------------IKVWDAVTGSR--TYSFEG--HGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL--GARV 523 (1092)
Q Consensus 467 ------------i~vwd~~~~~~--~~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~--~~~~ 523 (1092)
|++|++.++.. ...+.. +...+..+.| ++||++|+..+.++ .|.+||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 89999988763 223332 3334677777 56888888777554 7999999876 3133
Q ss_pred EecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC--eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCe
Q 001358 524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1092)
Q Consensus 524 ~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1092)
.+..+...+... ++|+|+.|+..+..+.....|++||+.++ .....+..+. ..+..+.+. ++..+++...|+.
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCE
Confidence 343343344444 35999999888765444678999999885 3333443333 456677777 5566777888888
Q ss_pred EEEEECC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCC
Q 001358 602 IKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1092)
Q Consensus 602 i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 655 (1092)
.++|.+. ++.....+..+. ...+..++++|+++.++.... .++|++||+.+++
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7777554 456666665432 234678889999886664432 4789999998765
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.48 E-value=1.6e-10 Score=124.94 Aligned_cols=280 Identities=10% Similarity=0.027 Sum_probs=191.2
Q ss_pred cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.....+.+++++++|+ +.++...++.|.+||.. ++.... . +..+...+.++++.++|++.
T Consensus 17 ~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~l~ 76 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF-E-----------------VPTPDAKVMCLIVSSLGDIW 76 (300)
T ss_dssp STTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE-E-----------------CSSTTCCEEEEEECTTSCEE
T ss_pred CCCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE-E-----------------CCCCCCcceeEEECCCCCEE
Confidence 3445889999999998 66666677899999987 543321 1 22344679999999999988
Q ss_pred EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE-EEecCCcceEE
Q 001358 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYS 490 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~ 490 (1092)
++...++.|..||.. ++. . ...+......+.++++.++|+ ++++...++.|..||.. ++... .+......+..
T Consensus 77 v~~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 77 FTENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF 150 (300)
T ss_dssp EEETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred EEecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence 877767889999988 543 2 112333446789999999998 67777668899999987 65542 22333456777
Q ss_pred EeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001358 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1092)
Q Consensus 491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1092)
+++. +++.+.++...++.|..++. .++... ........+..+++.++|+..++... .+.|..||. +++...
T Consensus 151 i~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~ 222 (300)
T 2qc5_A 151 ITLG--SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISE 222 (300)
T ss_dssp EEEC--TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEE
T ss_pred EEEC--CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEE
Confidence 8774 46677776666888999988 333322 22233456889999999986665432 446999998 555443
Q ss_pred EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEE
Q 001358 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1092)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1092)
..... ....+.++++.++++..++...++.|..|+. ++... .+........+.+++++++|++.++.. . .|..+
T Consensus 223 ~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 223 YDIPT--PNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp EECSS--TTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred EECCC--CCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 21111 1356889999999886666656789999998 45443 333332334578999999998665544 4 66666
Q ss_pred EC
Q 001358 650 ET 651 (1092)
Q Consensus 650 ~~ 651 (1092)
+.
T Consensus 297 ~p 298 (300)
T 2qc5_A 297 NL 298 (300)
T ss_dssp EE
T ss_pred CC
Confidence 64
No 206
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.47 E-value=6.7e-12 Score=133.61 Aligned_cols=240 Identities=10% Similarity=-0.057 Sum_probs=166.4
Q ss_pred cEEEEEECCCCCEEE-EEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001358 398 SVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 398 ~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
...+++++++|++++ +.+.++.|.+||..++.... ....+...+.+++++++|+ ++++.. ++.|.+||..++.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence 788999999999777 44677889999987653211 1123335688999999998 566655 8899999977654
Q ss_pred eeEEEe-cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCce
Q 001358 477 RTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 477 ~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1092)
. ..+. .....+..+++.+ ++.++++...++.|.+|+..+.............+..++++++|+.+++... .+
T Consensus 99 ~-~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~ 171 (270)
T 1rwi_B 99 Q-TVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN 171 (270)
T ss_dssp C-EECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GT
T ss_pred E-eeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CC
Confidence 3 3332 2335678888854 6677777778899999976554443322223345778999999986665433 45
Q ss_pred eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC
Q 001358 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1092)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1092)
.|.+||..++.......... ..+..+++++++..+++...++.|.+|+..+..... ... .+...+..++++++|+
T Consensus 172 ~i~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 172 RVVKLEAESNNQVVLPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRT 246 (270)
T ss_dssp EEEEECTTTCCEEECCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCC
T ss_pred EEEEEecCCCceEeecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCC
Confidence 79999988776543322222 568899999999766666678899999987655433 221 2223578999999999
Q ss_pred EEEEEeCCCeEEEEECCCCC
Q 001358 636 LLAVIANENRIKILETPESN 655 (1092)
Q Consensus 636 ~l~~~~~dg~i~iw~~~~~~ 655 (1092)
++++...++.|++++....+
T Consensus 247 l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 247 VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEGGGTEEEEECCCGGG
T ss_pred EEEEECCCCEEEEEcCCCcc
Confidence 88888889999999987653
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.47 E-value=2.2e-11 Score=134.98 Aligned_cols=205 Identities=14% Similarity=0.086 Sum_probs=143.1
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEe-
Q 001358 806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK- 881 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~- 881 (1092)
..++|+|||+++.++. ++.|.+.|+.+++.+.++..... ....|++.+.+++.+.||.+.+.+..+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 4568899999888875 36899999999999888764321 333442446667777888888888866655432
Q ss_pred ---eccccCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc-C---CCCCceEEEEecCCCEEEE
Q 001358 882 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM-T---LAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 882 ---l~~h~~~V-~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~---~~~~v~~l~~s~dg~~la~ 953 (1092)
+.....++ ..+.|+++++.++..+..+.|.+.|+.+........+....... . .......++++||++.+.+
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 22112222 23578999998888888899999999765432211111110000 0 0012334799999998777
Q ss_pred Ee-----------CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceEEee
Q 001358 954 VH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 954 ~~-----------d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~s-~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
.. .+.|.++|..+.+.+..+..+ ....++.|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 42 247999999999999886544 3588999999999 888887 5899999999999999887
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.45 E-value=1.1e-11 Score=137.49 Aligned_cols=281 Identities=11% Similarity=0.093 Sum_probs=191.4
Q ss_pred CCCceEEEEEcCc----CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe----
Q 001358 344 PVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---- 415 (1092)
Q Consensus 344 pdg~~llasg~~d----~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~---- 415 (1092)
|++++++++...+ +.|.+.|..+++.+..... -..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-------------------G~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-------------------GFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-------------------CSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-------------------CCCC--ceEECCCCCEEEEEecccc
Confidence 5666666665544 7999999999988865221 1233 799999999998886
Q ss_pred ------CCCEEEEEEccCCCCccceEEec--c---cccceeEEEeeCCCCcEEEEEEe--CCCcEEEEECCCCceeEEEe
Q 001358 416 ------SKHIVQLYAYHGGSDARQQLEID--A---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 416 ------~d~~i~iwd~~~~~~~~~~~~l~--~---h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~~~~ 482 (1092)
.++.|.++|..+++.+..+. +. . ....-..++|+|||++ ++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987665432 22 0 0123457899999994 55544 36889999999999998886
Q ss_pred cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE----ecCCCCce-EEEEEecCCCEEEEEecCCCCceeE
Q 001358 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLGC-TRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~i-~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
.... ....+... ..+++.+.||.+.+.+....+.... +.....++ ..+.+++++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 4221 12222222 4667778888888888854443321 11112221 23567899988877654 4569
Q ss_pred EEEeCCCCeEE--EEEeec-----c--ccCCceEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceEEEEeC
Q 001358 558 VEWNESEGAIK--RTYQGL-----Q--LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 558 ~iwd~~~~~~~--~~~~~~-----~--~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~ 618 (1092)
++.|..++... ..+... . ........++++|+++++++... .+.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998765432 111110 0 00011223689999998887642 35799999999999999876
Q ss_pred CCCCCCCceEEEccCCC-EEEEEe-CCCeEEEEECCCCCeeeec
Q 001358 619 GGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAA 660 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~ 660 (1092)
.. ....++|+|||+ ++++.. .++.|.++|..+.+.+..+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 53 258899999999 888887 5899999999999888775
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=7.9e-12 Score=153.67 Aligned_cols=249 Identities=11% Similarity=0.017 Sum_probs=158.3
Q ss_pred cCCCCceEEeecCCCceEEEEEcCcC----cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+|...+..++|||||++++.+.+.+| +|++||+.+|+.+.. . . +...+..++||||
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-----------------~--~~~~~~~~~wspD 219 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-----------------L--KWVKFSGLAWLGN 219 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-----------------E--EEEESCCCEESTT
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-----------------C--CCceeccEEEECC
Confidence 34447889999999996444433333 599999999987542 0 0 1112356899999
Q ss_pred CCEEEEEeCCCE--------------EEEEEccCCCCcc-ceEEecccccceeEEEeeCCCCcEEEEEEeC-----CCcE
Q 001358 408 GSLLGVAYSKHI--------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTI 467 (1092)
Q Consensus 408 g~~las~~~d~~--------------i~iwd~~~~~~~~-~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-----d~~i 467 (1092)
+.|+.++.++. |++|++.++.... .......+...+..+.|||||++ |+..+. ...|
T Consensus 220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l 296 (741)
T 1yr2_A 220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTV 296 (741)
T ss_dssp -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEE
T ss_pred -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceE
Confidence 99998876543 8999998765321 11122233345889999999994 444443 3489
Q ss_pred EEEECCCC--ceeEEEecCCcceEEEeecccCCccEEEEEecC----CeEEEEEcCCCC-c-eEEecCCCCceEEEEEec
Q 001358 468 KVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLG-A-RVDYDAPGLGCTRMAYSA 539 (1092)
Q Consensus 468 ~vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~-~-~~~~~~~~~~i~~~~~s~ 539 (1092)
++||+.++ ++...+..+...+....+ +++..|+..+.+ +.|.+||+.+.. . ...+..+...+..++++
T Consensus 297 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~- 372 (741)
T 1yr2_A 297 HVARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA- 372 (741)
T ss_dssp EEEEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-
T ss_pred EEEECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-
Confidence 99999887 425566556555544432 355667666653 459999988742 2 33334444456677776
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCeEEEEECCCCce
Q 001358 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 612 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~ 612 (1092)
++..+++... ++...|++++.. +...+.+..+. ...+..+.++|+++.++... ..++|++||+.+++.
T Consensus 373 ~~~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 373 GNRLFASYIH--DAKSQVLAFDLD-GKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp BTEEEEEEEE--TTEEEEEEEETT-SCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCEEEEEEEE--CCEEEEEEEeCC-CCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4455555544 335556777764 55555555432 36788899999988666432 457899999988873
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.39 E-value=1.1e-10 Score=127.32 Aligned_cols=250 Identities=13% Similarity=0.098 Sum_probs=165.2
Q ss_pred ccCCCCceEEeecCCCceEEEE-------EcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 331 IEGSSSPMSMDFHPVQHTLLLV-------GTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llas-------g~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.+.-....+++|+++|+ ++++ +..++.|.+||..+++.... .. ....++...+.+++
T Consensus 14 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~--------------~~~~~~~~~~~~i~ 77 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CK--------------PEVNGYGGIPAGCQ 77 (314)
T ss_dssp ECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE-EC--------------CEETTEECCEEEEE
T ss_pred hccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Ee--------------cccCCCCCCCceEE
Confidence 33444788999999997 6666 56678999999888875421 00 00122446789999
Q ss_pred ECCC-CCEEEEEeCCCEEEEEEccCCCCccc-eEEecc-cccceeEEEeeCCCCcEEEEEEeCC---------------C
Q 001358 404 WSPD-GSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCGDD---------------K 465 (1092)
Q Consensus 404 ~spd-g~~las~~~d~~i~iwd~~~~~~~~~-~~~l~~-h~~~v~~~~~s~d~~~l~l~s~~~d---------------~ 465 (1092)
++++ |+++++.. .+.|.+||.. ++.... .....+ ....+.+++++++|+ ++++...+ +
T Consensus 78 ~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 78 CDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp ECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCC
Confidence 9999 76555544 4469999988 653211 000011 224588999999998 56665544 5
Q ss_pred cEEEEECCCCceeEEEecCCcceEEEeec--ccCCccEE-EEEecCCeEEEEEcCC-CC-----ceEEecCCC-CceEEE
Q 001358 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHFI-FSISVDGKIKAWLYDS-LG-----ARVDYDAPG-LGCTRM 535 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~--~~~~~~~l-~s~~~dg~i~vwd~~~-~~-----~~~~~~~~~-~~i~~~ 535 (1092)
.|..||.. ++..... .+......++++ .+++++.+ ++...++.|.+|+++. +. ....+..+. ..+..+
T Consensus 154 ~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i 231 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp EEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred eEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence 67777765 5544332 333445677775 11566555 4445688999999762 22 112233332 567889
Q ss_pred EEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCC
Q 001358 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK 609 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~ 609 (1092)
+++++|+..++... ++.|.+||..+++.+..+..+. ..+.+++++|+++.|+++ ..++.|..|++..
T Consensus 232 ~~d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 232 DFDEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEBTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999988777643 4569999998788777776554 678999999999966555 4568899998864
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.38 E-value=1.6e-09 Score=117.04 Aligned_cols=243 Identities=12% Similarity=0.027 Sum_probs=169.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+......+.++++.++|+..++...++.|.+||.. ++... ..+..+...+.++++.++|. ++++...++.|..||
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE--FEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLS 89 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE--EECCCCCCcceeEEECCCCC--EEEEecCCCeEEEEC
Confidence 34456788999999999988877778899999988 54221 12333446789999999998 667666678899999
Q ss_pred CCCCceeE-EEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCce-EEecCCCCceEEEEEecCCCEEEEEec
Q 001358 472 AVTGSRTY-SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 472 ~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
.. ++... .+......+..+++. +++.++++...++.|..+|.+ ++.. .........+..+++.++|+..++...
T Consensus 90 ~~-g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 165 (300)
T 2qc5_A 90 KK-GGFTEYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ 165 (300)
T ss_dssp TT-SCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred CC-CCeEEecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC
Confidence 77 65432 222234567788875 466777777778899999887 3333 223334457889999999996555432
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001358 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
.+.|..+|. +++... +.... ....+..+++.++++..++....+.|.+|+. ++..... ........+..++
T Consensus 166 ----~~~i~~~~~-~g~~~~-~~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~ 236 (300)
T 2qc5_A 166 ----NNSIGRITN-TGKLEE-YPLPT-NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIPTPNARPHAIT 236 (300)
T ss_dssp ----TTEEEEECT-TCCEEE-EECSS-TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEE
T ss_pred ----CCeEEEECC-CCcEEE-eeCCC-CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCCCCCCceEEE
Confidence 456999998 565543 32211 1256889999999876666666788999998 5554433 2222234578899
Q ss_pred EccCCCEEEEEeCCCeEEEEECC
Q 001358 630 FNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
++++|++.++...++.|..|+..
T Consensus 237 ~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 237 AGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ECSTTCEEEEETTTTEEEEECTT
T ss_pred ECCCCCEEEeccCCCeEEEECCC
Confidence 99999877666667899999983
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.36 E-value=3.9e-10 Score=126.90 Aligned_cols=242 Identities=12% Similarity=0.012 Sum_probs=164.2
Q ss_pred CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
...+.++|+|+|+ |+++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999998 788888889999999988765532 112 22333 9999999999998
Q ss_pred eCCC--EEEEEEccCCCCccceEEecc-cccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE----EecCCcc
Q 001358 415 YSKH--IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----FEGHGAP 487 (1092)
Q Consensus 415 ~~d~--~i~iwd~~~~~~~~~~~~l~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~----~~~~~~~ 487 (1092)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 7765 799999887654332211112 4556889999995552 44467788999999987764322 2222222
Q ss_pred e--EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC---------------CCceEEEEEecCCCEEEEEecC
Q 001358 488 V--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---------------GLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 488 v--~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---------------~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
- ..++|++. ++.++++...++.|+.|+.+.. ...+.+. -.....++++++|+.+++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 27888653 3567777778899999987654 2222221 13478899999999655543
Q ss_pred CCCceeEEEEeCCCCeEEEEEeecc------------ccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358 551 KEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
.+++.|+.|+..++.. ..+.++. ........+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0266899999877764 4444431 00145889999999877777778888887765
No 213
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=2e-10 Score=125.18 Aligned_cols=245 Identities=9% Similarity=0.066 Sum_probs=163.5
Q ss_pred cEEEEEEecCCcEEEE-------eecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCC-CCCCCCCeeE
Q 001358 736 KISRLTYNNGGQAIFA-------LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT-DSNSQEAVPC 807 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~-------~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~v~~ 807 (1092)
...+++|+++|..+++ ...++.|..|+.... ... ....+ ..++...+.+
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g----------------------~~~-~~~~~~~~~~~~~~~~ 75 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG----------------------KKT-VICKPEVNGYGGIPAG 75 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC----------------------CEE-EEECCEETTEECCEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC----------------------cEE-EEEecccCCCCCCCce
Confidence 4568899999987777 466777887764332 211 11000 0013356889
Q ss_pred EEEecC-CCEEEEEeCCeEEEEEcCCceeeEE-ecC----CCCCeEEEEEcCCCCCEEEEEeCC---------------C
Q 001358 808 FALSKN-DAYLFSASGGVISLYIVMTFKTILT-IMP----PSPTATSLAFNPHDNNVIAIGMDD---------------S 866 (1092)
Q Consensus 808 ~~~s~d-g~~l~~~sdg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~s~~d~~~lasg~~d---------------g 866 (1092)
++++++ |+++++..++.|.+||.. ++.... ... +...+.++++++ +++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence 999999 776666656689999988 665432 221 123578999999 78887776655 5
Q ss_pred eEEEEEcCCceeeEeeccccCCeEEEEEc----CCCCEEE-EEeCCCcEEEEEcC-CCceeeeeeeecCCCCcCCCCCce
Q 001358 867 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILV-SSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSET 940 (1092)
Q Consensus 867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s----pdg~~l~-s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1092)
.|..|+.. ++... +..+......++|+ |+++.|. +...++.|.+|+++ .++...........+... ..+.
T Consensus 154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGAD 229 (314)
T ss_dssp EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEEE
T ss_pred eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCCC
Confidence 67777766 55433 33344567889999 9997654 44567899999987 443322223333332210 1467
Q ss_pred EEEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEE-EEeCCCcEEEEECCCC
Q 001358 941 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF-TSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 941 ~l~~s~dg~~la~~-~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~-t~s~Dg~i~vwd~~~~ 1010 (1092)
.++++++|+++++. .++.|.+||..+++.+..+ ..+...+.+++|++||+.|+ +...++.|..|++...
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 89999999988874 6788999999877766553 34557899999999999555 4445678999998753
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.33 E-value=2.3e-10 Score=139.06 Aligned_cols=252 Identities=11% Similarity=0.046 Sum_probs=165.7
Q ss_pred cCCCCceEEeecCCCceEEEEEcC----cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~----d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+|...+..++|||||++++.+.+. ..+|+|||+.+|+.+.. . +. ......++|+ |
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~~--~~k~~~~~Ws-D 184 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------LK--DVKFSGISWL-G 184 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------EE--EEESCCCEEE-T
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------cC--CceeccEEEe-C
Confidence 456678899999999964444332 35799999999986542 1 11 1112467899 9
Q ss_pred CCEEEEEeCCC-------------EEEEEEccCCCCcc-ceEEecc-cccceeEEEeeCCCCcEEEEEEe---CCCcEEE
Q 001358 408 GSLLGVAYSKH-------------IVQLYAYHGGSDAR-QQLEIDA-HVGNVNDLAFSAPCKQISVITCG---DDKTIKV 469 (1092)
Q Consensus 408 g~~las~~~d~-------------~i~iwd~~~~~~~~-~~~~l~~-h~~~v~~~~~s~d~~~l~l~s~~---~d~~i~v 469 (1092)
|+.|+.++.+. .|++|++.++..-. .+..... |...+..+.|||||+++ +++.+ .++.|++
T Consensus 185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYV 263 (693)
T ss_dssp TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEE
T ss_pred CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEE
Confidence 99999998773 49999998764321 1112223 44557889999999963 33333 2358999
Q ss_pred EECCCCc-eeEEEecCCcceEEEeecccCCccEEEEEecC---CeEEEEEcCCCCc--eEEecCCCCceEEEEEecCCCE
Q 001358 470 WDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 470 wd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~dg~~ 543 (1092)
||+.++. ....+..+....... +.+. ++.+++....+ +.|..+++.+... ...+..+...+. .|+++++.
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~ 339 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY 339 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE
T ss_pred EECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE
Confidence 9998774 455666666655544 3322 33455555443 5799999987654 234444444454 89999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC----CeEEEEECCCCceE
Q 001358 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNKVQLL 613 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~~~~~ 613 (1092)
|+..... ++...|++||..++. .+.+.... ...+..+.++++++.++....+ ++++.||+.+++..
T Consensus 340 lv~~~~~-~g~~~l~~~d~~g~~-~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 340 LFAEYMV-DATARVEQFDYEGKR-VREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEEE-TTEEEEEEECTTSCE-EEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEEE-CCeeEEEEEECCCCe-eEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 8877643 345679999988554 34443222 2457777888888877765544 88999999887644
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.33 E-value=3.4e-10 Score=123.61 Aligned_cols=256 Identities=9% Similarity=0.040 Sum_probs=169.2
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCce-----------eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001358 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFK-----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 872 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd 872 (1092)
.+..+++++...++++|+...+.+|++++.+ ..... .+.. |+.++| |+.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence 6889999999999999998888889976544 11222 3555 999999 57899988 889999999
Q ss_pred cCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEE
Q 001358 873 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952 (1092)
Q Consensus 873 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 952 (1092)
+.+.........|..++.++.+.+.. +++++.||.|.+||++++.... +. ..|++++|||+| ..+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~---------~~Vs~v~WSpkG-~~v 177 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LA---------QNVTSFDVTNSQ-LAV 177 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EE---------ESEEEEEECSSE-EEE
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---cc---------CCceEEEEcCCc-eEE
Confidence 98876666677788889988887653 8889999999999999765321 11 259999999999 444
Q ss_pred EEeCCcEEEEEcCCcee--eeeec-----c---CCCcCEEEEEEecCCCEEEEEeCC-----------CcEEEEECCCCc
Q 001358 953 LVHETHLAIYEAEELTC--LKQWF-----P---ISSVPISQATFSCDCRMVFTSFVD-----------GTLSIHEASNLE 1011 (1092)
Q Consensus 953 ~~~d~~v~lwd~~~~~~--~~~~~-----~---~h~~~v~~l~fs~dg~~l~t~s~D-----------g~i~vwd~~~~~ 1011 (1092)
...||++++|+...++. ...+. . +|...|.++.|.+++.++++-+.. ..+++-....+.
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~ 257 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGS 257 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCC
Confidence 47899999999887775 44331 1 478899999999999999874321 145666633333
Q ss_pred eEE-ee-ccccccCCCCccCcccceE-EEECCCCCCEEEEEeCCC-cEEEEecCCCCCccccCCCCCcccCCCCCCcc
Q 001358 1012 VQC-RI-LSTAYLRPTTSCLHVYPHA-IAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSE 1085 (1092)
Q Consensus 1012 ~~~-~~-~~~~~~~~~~~~~~v~~~~-~~~~p~~~~~l~~~~~dg-~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1085 (1092)
... .+ ...............+... -.|.|+..+++++++.-. .|.+++-. . ...+..|..+++.+.+.+
T Consensus 258 ~~f~~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~di~il~~~----~-~~~~~~Ds~Ra~lPl~~~ 330 (388)
T 1xip_A 258 ASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSK----Q-VIEPSQDSERAVLPISEE 330 (388)
T ss_dssp EEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSS----S-EEEESSGGGCCBCCBCTT
T ss_pred ceeEccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcceEEeccc----c-EEeecCccccceeccCCC
Confidence 221 11 1110011100011112111 235443334555555544 57777532 1 233445567777766665
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.31 E-value=9e-10 Score=118.64 Aligned_cols=228 Identities=10% Similarity=0.052 Sum_probs=149.8
Q ss_pred cEEEEEEecCCcEE-EEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001358 736 KISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l-~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg 814 (1092)
-..+..|++++..+ ++...++.|..|+... +. ..... ....+.+++++++|
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~-~~~~~-----~~~~~~~i~~~~dG 65 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFT----------------------KQ-VQRVT-----MDAPVSSVALRQSG 65 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTT----------------------CC-EEEEE-----CSSCEEEEEEBTTS
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCC----------------------Cc-EEEEe-----CCCceEEEEECCCC
Confidence 34578889865544 4444567777776432 22 11111 34568899999999
Q ss_pred CEEEEEeCCeEEEEEcCCceeeEEecC----CCCCeEEEEEcCCCCCEEEEEeCC---------CeEEEEEcCC-ceeeE
Q 001358 815 AYLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARS-SEVIS 880 (1092)
Q Consensus 815 ~~l~~~sdg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~d---------g~v~iwd~~~-~~~~~ 880 (1092)
+++++ .++.|.+||..+++....... ....+..++++| +++++++...+ ..-.||.+.. ++. .
T Consensus 66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~ 142 (297)
T 3g4e_A 66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-K 142 (297)
T ss_dssp SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-E
T ss_pred CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE-E
Confidence 95554 577899999988765433221 123578899999 78877654322 2334555543 333 3
Q ss_pred eeccccCCeEEEEEcCCCCEE-EEEeCCCcEEEEEc--CCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eC
Q 001358 881 KLEGHSKRVTGLVFSDALNIL-VSSGGDAQIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 956 (1092)
Q Consensus 881 ~l~~h~~~V~~l~~spdg~~l-~s~s~Dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d 956 (1092)
.+..+......++|+||++.| ++.+.++.|.+|++ .++.....+.+....... ..+..+++.++|++.++. ..
T Consensus 143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence 333344557889999999876 45556788999998 455543333333332211 246789999999988775 45
Q ss_pred CcEEEEEcCCceeeeeeccCCCcCEEEEEEe-cCCCEEEEEeC
Q 001358 957 THLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFV 998 (1092)
Q Consensus 957 ~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~s~ 998 (1092)
+.|..||..+++.+..+. .+...+++++|. ||++.|+.++.
T Consensus 220 ~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TEEEEECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcC
Confidence 779999999898877643 445789999999 89887766654
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.30 E-value=9.5e-10 Score=118.48 Aligned_cols=233 Identities=12% Similarity=0.094 Sum_probs=156.0
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCE
Q 001358 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
..+..-..+..|+|++..++.+...++.|..||..++.... + .....+.+++++|+|++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l 67 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGY 67 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCE
Confidence 33334566899999766688888888999999999876431 1 13467999999999996
Q ss_pred EEEEeCCCEEEEEEccCCCCccceEEecc--cccceeEEEeeCCCCcEEEEEEeC---------CCcEEEEECCCCceeE
Q 001358 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGD---------DKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~l~~--h~~~v~~~~~s~d~~~l~l~s~~~---------d~~i~vwd~~~~~~~~ 479 (1092)
+++. ++.|.+||.++++... ...... ....+..++++|+|+ ++++... .....||.+.....+.
T Consensus 68 ~v~~--~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 142 (297)
T 3g4e_A 68 VATI--GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK 142 (297)
T ss_dssp EEEE--TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE
T ss_pred EEEE--CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE
Confidence 5553 4569999998875321 111111 224588999999998 4554322 1234555544322233
Q ss_pred EEecCCcceEEEeecccCCccEE-EEEecCCeEEEEEcC--CCCce-----EEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358 480 SFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~--~~~~~-----~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
.+..+....+.++|++ +++.+ ++.+.++.|.+|+++ ++... ..+.........+++.++|+..++...
T Consensus 143 ~~~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-- 218 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-- 218 (297)
T ss_dssp EEEEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET--
T ss_pred EEeeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC--
Confidence 3333444567888854 56555 556678899999984 33211 122222346788999999987766643
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEeC
Q 001358 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 598 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~ 598 (1092)
.+.|..||..+|+.+..+..+. ..+.+++|. |+++.|++++.
T Consensus 219 --~~~v~~~d~~tG~~~~~i~~p~---~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 --GGRVIRLDPVTGKRLQTVKLPV---DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp --TTEEEEECTTTCCEEEEEECSS---SBEEEEEEESGGGCEEEEEEB
T ss_pred --CCEEEEEcCCCceEEEEEECCC---CCceEEEEeCCCCCEEEEEcC
Confidence 4569999999999998887765 678999998 88888877654
No 218
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.30 E-value=8e-06 Score=96.36 Aligned_cols=532 Identities=9% Similarity=-0.000 Sum_probs=290.3
Q ss_pred EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceE
Q 001358 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1092)
+|+.+ ....|+..++++..... ...+. .-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 45554 45568999998654211 11121 2345789999997764 556666788999999876544333332224466
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001358 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1092)
.+++.+. ++.+.++-...+.|.+.+++...........-.....+++.|....|+..-.. ....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence 7777543 34566666677889999987665444443444567899999976666665321 14568888876554433
Q ss_pred EEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001358 570 TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1092)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1092)
.... ......+++++++..|+.+. ..+.|...|+..... ..+... ......+++.. +.++++-...+.|..
T Consensus 161 l~~~----~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 161 LVPN----VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp EECS----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EECC----CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 3322 25688999999887777765 567899999876544 333222 22345777765 445555555788988
Q ss_pred EECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceeccc
Q 001358 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1092)
Q Consensus 649 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 728 (1092)
.|..+++....+.........+.+....... + .+.....++. + ..+.+-.. .....|. -
T Consensus 233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~--~-------~n~C~~~ng~----C---~~~C~~~~--~~~~~C~---C 291 (628)
T 4a0p_A 233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS--G-------WNECASSNGH----C---SHLCLAVP--VGGFVCG---C 291 (628)
T ss_dssp EETTTCCSCEEEECSCCSCCEEEEECGGGSC--C-------CCTTTTTGGG----C---SSEEEEET--TTEEEEE---C
T ss_pred EECCCCCceEEEecCCCCcceeeeeeecccc--c-------ceEeccCCCC----c---chhhhcCC--CCCeeEE---c
Confidence 8877775555444333333333322111000 0 0000000000 0 00000000 0000000 0
Q ss_pred CC--ccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001358 729 PS--KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1092)
Q Consensus 729 ~~--~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~ 806 (1092)
+. ........|. +....++.+. ...|+-..+... ... -..... ..-..+.
T Consensus 292 ~~g~~l~~d~~~C~---~~~~~Ll~s~-~~~i~~i~l~~~--------------------~~~-~~~l~~---~~~~~~~ 343 (628)
T 4a0p_A 292 PAHYSLNADNRTCS---APTTFLLFSQ-KSAINRMVIDEQ--------------------QSP-DIILPI---HSLRNVR 343 (628)
T ss_dssp STTCEECTTSSCEE---CCSSEEEEEE-TTEEEEECCCTT--------------------CCC-CEECCC---TTCSCEE
T ss_pred CCCcEecccCCcCc---cccceeeeec-cceEEEEecccc--------------------cCc-eEEEEe---hhcCCce
Confidence 00 0000001111 1112222222 223322221110 000 001111 1234577
Q ss_pred EEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC------CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001358 807 CFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1092)
.++|.+.+..|..+. .+.|+.++.........+.. ....+..+|+....+++..+-+..+.|.+.+++ |+.
T Consensus 344 ~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~ 422 (628)
T 4a0p_A 344 AIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRS 422 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCE
T ss_pred EEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCe
Confidence 899999877777776 47788888764433333332 234678999998335555666677899999987 444
Q ss_pred eEee-ccccCCeEEEEEcC-CCCEEEEEeCCC--cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE
Q 001358 879 ISKL-EGHSKRVTGLVFSD-ALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954 (1092)
Q Consensus 879 ~~~l-~~h~~~V~~l~~sp-dg~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~ 954 (1092)
...+ ........+|++.| .|.++++-.... .|...+++...... .+.. .. .....+++.++++.|..+
T Consensus 423 ~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~~~---~l---~~P~gla~D~~~~~LYw~ 494 (628)
T 4a0p_A 423 VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFFS---GL---SKPIALALDSRLGKLFWA 494 (628)
T ss_dssp EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EECS---SC---SCEEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EEec---cC---CCccEEEEeCCCCEEEEE
Confidence 4443 33456789999999 555555543332 46666665432111 1211 11 257899999998888775
Q ss_pred e--CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEee
Q 001358 955 H--ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 955 ~--d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
. .+.|..+++. |.....+.........+++... +..+++=...+.|...|..+|+....+
T Consensus 495 D~~~~~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 495 DSDLRRIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp ETTTTEEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred eCCCCEEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 3 4679999985 4444444433344567777654 555555555677888888877654443
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.29 E-value=6.2e-11 Score=130.73 Aligned_cols=273 Identities=11% Similarity=0.015 Sum_probs=175.5
Q ss_pred CCceEEeecCCCceEEEEEc--CcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358 335 SSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .++-|.. ...+|-..+..++|+++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~~----------~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQSG----------NAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCCS----------SCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCccc----------CcccceeEeeEEEEcCCCcEEE
Confidence 5899999999998 666653 2343667766544322 2211110 0224667899999999998776
Q ss_pred EEeC-----CCEEEEEEccCCCCccceEEec----ccccceeEEEeeCCCCcEEEEEEe---CCCcEEEEECCCCceeEE
Q 001358 413 VAYS-----KHIVQLYAYHGGSDARQQLEID----AHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 413 s~~~-----d~~i~iwd~~~~~~~~~~~~l~----~h~~~v~~~~~s~d~~~l~l~s~~---~d~~i~vwd~~~~~~~~~ 480 (1092)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999988644422 221 12345689999987653 456655 688999999999987777
Q ss_pred EecCCcceE-EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358 481 FEGHGAPVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 481 ~~~~~~~v~-~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
+.+|..... ...+ ..++..+.+.+.+|.++.|. ..+..++++|||+.|+.+... ...++.
T Consensus 161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccce--eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 665432211 1222 22556677777888876663 145789999999998887642 224666
Q ss_pred EeCC---CCe-----EEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001358 560 WNES---EGA-----IKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 560 wd~~---~~~-----~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
++.. .+. ... ...++. .....++++++|..+++...++.|.+||..+++........ .......++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va 297 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFN 297 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEE
T ss_pred EEHHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeE
Confidence 6532 111 000 111222 34567899999988888888999999998666654433322 223467899
Q ss_pred EccCCCEEEEEeCCCeE
Q 001358 630 FNKNGTLLAVIANENRI 646 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i 646 (1092)
|.+++.++++....+.+
T Consensus 298 ~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 298 FGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp ECTTSCEEEEECCGGGS
T ss_pred ECCCCcEEEEeCccccc
Confidence 99998877777654433
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.28 E-value=6.3e-10 Score=120.43 Aligned_cols=239 Identities=12% Similarity=0.044 Sum_probs=160.4
Q ss_pred cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
...+..|..+.......+|+|+|+.++.++..++.|..|+. +++.. . +..+...+..++
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~-------------------~~~~~~~~~gl~ 92 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-V-------------------LLDATAFTNGNA 92 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-E-------------------EEESCSCEEEEE
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-E-------------------EeCCCCccceee
Confidence 33445555555678899999999878889888999999998 45422 1 223566789999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCCccceEEeccc-ccceeEEEeeCCCCcEEEEE----EeC-------------CC
Q 001358 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CGD-------------DK 465 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~v~~~~~s~d~~~l~l~s----~~~-------------d~ 465 (1092)
++++|+++++...++.|.+|+.. ++.........+. ...+.++++.++|+ ++++ |.. .+
T Consensus 93 ~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 93 VDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred ECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCC
Confidence 99999977776666789999986 4421111111111 13477899999998 6665 321 25
Q ss_pred cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecC------CeEEEEEcCCCCc---eEEecCCCCceEEEE
Q 001358 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGA---RVDYDAPGLGCTRMA 536 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~---~~~~~~~~~~i~~~~ 536 (1092)
.|..||..+++..... .....+.++|+ +|++.|+.+... +.|.+|++..... .............++
T Consensus 170 ~v~~~d~~~g~~~~~~--~~~~p~gl~~s--pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~ 245 (305)
T 3dr2_A 170 SVYRLPPDGSPLQRMA--DLDHPNGLAFS--PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC 245 (305)
T ss_dssp EEEEECSSSCCCEEEE--EESSEEEEEEC--TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred eEEEEcCCCCcEEEEe--cCCCCcceEEc--CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence 6888887777654433 33456778884 566767666654 7899999875431 111122233455789
Q ss_pred EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCe
Q 001358 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1092)
+.++|+..++. . + .|.+|+. .++.+..+.... .+..++|+++++.|+.++.++.
T Consensus 246 ~d~~G~lwv~~-~----~-gv~~~~~-~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 246 VDRGGWLWSSS-G----T-GVCVFDS-DGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp ECTTSCEEECC-S----S-EEEEECT-TSCEEEEEECSS----CCCEEEECTTSCEEEEEETTEE
T ss_pred ECCCCCEEEec-C----C-cEEEECC-CCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCeE
Confidence 99999955443 2 2 3999998 577777776543 4788999999998988887653
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.27 E-value=2.1e-10 Score=125.20 Aligned_cols=272 Identities=10% Similarity=-0.031 Sum_probs=174.6
Q ss_pred eEEEEEcCcC----cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe--------
Q 001358 348 TLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-------- 415 (1092)
Q Consensus 348 ~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-------- 415 (1092)
+++++...++ +|.+.|..+++.+.+.. .+. .+ .+++||||++++++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GAF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------ECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEe------------------CCC-CC--ceEECCCCCEEEEEccccccccc
Confidence 4556655555 78899999998887522 122 34 799999999999986
Q ss_pred --CCCEEEEEEccCCCCccceEEecc-c----ccceeEEEeeCCCCcEEEEEEe--CCCcEEE--EECCCCceeEEEecC
Q 001358 416 --SKHIVQLYAYHGGSDARQQLEIDA-H----VGNVNDLAFSAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEGH 484 (1092)
Q Consensus 416 --~d~~i~iwd~~~~~~~~~~~~l~~-h----~~~v~~~~~s~d~~~l~l~s~~--~d~~i~v--wd~~~~~~~~~~~~~ 484 (1092)
.++.|.+||+.+++.+..+. +.+ . ......++|+|||++ ++.+. .+..|.+ +|+.+ +.++...
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 36789999999998766432 220 0 123568999999995 44443 3567888 99877 4555321
Q ss_pred CcceEEEeecccCCccEEEEEecCCeEEEEEcCC-----CCceE----EecCCCCceEEEEEecCCCEEEEEecCCCCce
Q 001358 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1092)
. . ..+.+.+. ..+++.+.||.+.+.|+.+ ++... .+.....+. . ++++..++..+. +
T Consensus 166 ~-~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~ 231 (368)
T 1mda_H 166 S-C---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S 231 (368)
T ss_dssp S-C---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred C-c---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence 1 1 11223322 3456667788888888876 22111 011112233 3 677776666553 3
Q ss_pred eEEEEeCCCCe--EEEEEeec-------cccCCceEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCceEEEEe
Q 001358 556 FLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD---------DHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 556 ~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~s~---------dg~i~iwd~~~~~~~~~~~ 617 (1092)
.+.+.|..++. .+..+... .........++++|++++++++.. ++.+.++|+.+.+.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 58888886542 22222110 000011122679999999887643 2356699999999998887
Q ss_pred CCCCCCCCceEEEccCCCE-EEEEe-CCCeEEEEECCCCCeeeecccc
Q 001358 618 AGGGLPENPRICFNKNGTL-LAVIA-NENRIKILETPESNSVDAAGVL 663 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~-l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 663 (1092)
... ....++|+|||++ +++.. .++.|.++|+.+.+.+..+...
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 553 3688999999984 55555 5899999999999888877643
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.26 E-value=3.7e-10 Score=137.32 Aligned_cols=245 Identities=9% Similarity=0.063 Sum_probs=160.6
Q ss_pred CCCCcEEEEEECCCCCEEEEEe-----CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC---
Q 001358 394 DPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--- 465 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--- 465 (1092)
+|...+..++|||||++||.+. ...+|++||+++|+.+.. .+. ......++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~--~~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLK--DVKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEE--EEESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccC--CceeccEEEe-CCC--EEEEEEecCccc
Confidence 4566788999999999999653 235799999999875431 111 1123678999 999 566666553
Q ss_pred ----------cEEEEECCCCce----eEEEec-CCcceEEEeecccCCccEEEEEec----CCeEEEEEcCCCC-ceEEe
Q 001358 466 ----------TIKVWDAVTGSR----TYSFEG-HGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-ARVDY 525 (1092)
Q Consensus 466 ----------~i~vwd~~~~~~----~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~-~~~~~ 525 (1092)
.|++|++.++.. +..... |...+.++.+ ++||++|+.... +..|.++|+.+.. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 499999987653 222233 3444666666 557777754432 2479999988764 34444
Q ss_pred cCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeC-CC--
Q 001358 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DH-- 600 (1092)
Q Consensus 526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg-- 600 (1092)
..+....... ++++|..|+..+........|+.+|+.++.. .+.+..+. ..+. .|++++++|+.... ++
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCee
Confidence 4444444444 7788887776665433367899999988754 34455554 3343 88899988887654 43
Q ss_pred eEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC----CeEEEEECCCCC
Q 001358 601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN 655 (1092)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iw~~~~~~ 655 (1092)
.|++|++.++ ....+..... ..+..+.+++++..++....+ +.+..||+.+++
T Consensus 351 ~l~~~d~~g~-~~~~l~~p~~-~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 351 RVEQFDYEGK-RVREVALPGL-GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECTTSC-EEEEECCSSS-SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCCC-eeEEeecCCC-ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 6889998744 4455543321 234566677888877766554 889999987764
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.25 E-value=3.1e-10 Score=123.83 Aligned_cols=196 Identities=11% Similarity=0.005 Sum_probs=127.7
Q ss_pred eEEEEecCCCEEEEEe---CCeEEE--EEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-----
Q 001358 806 PCFALSKNDAYLFSAS---GGVISL--YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----- 875 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~----- 875 (1092)
..++++|||++++++. ++.+.+ +|..+ +.++.... . ..+.|++...+++.+.||.+.+.++.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 3578888888888875 256878 88876 34443211 1 223343455666677888888889887
Q ss_pred ceeeEe----eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC------CCCcCCCCCceEEEEe
Q 001358 876 SEVISK----LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFH 945 (1092)
Q Consensus 876 ~~~~~~----l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~s 945 (1092)
++.... +.-...+. + ++++..++..+. +.|.+.|+.+........+... .+..+ .....++|+
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~s 272 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKL 272 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEE
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEEc
Confidence 543321 11122343 3 667777766677 8999999976432211111111 01000 112337899
Q ss_pred cCCCEEEEE-e-C--------CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceE
Q 001358 946 KDQTRFLLV-H-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQ 1013 (1092)
Q Consensus 946 ~dg~~la~~-~-d--------~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~s-~Dg~i~vwd~~~~~~~ 1013 (1092)
||++.+.++ . . +.+.++|+.+++.+..+..+. ....++|+|||+ .+++.. .+++|.++|+.+++.+
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 999988874 3 2 357799999999888765443 688999999998 456666 5899999999999999
Q ss_pred Eeec
Q 001358 1014 CRIL 1017 (1092)
Q Consensus 1014 ~~~~ 1017 (1092)
.++.
T Consensus 351 ~~I~ 354 (368)
T 1mda_H 351 SSVE 354 (368)
T ss_dssp EECC
T ss_pred EEEE
Confidence 8886
No 224
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.24 E-value=3.9e-09 Score=118.72 Aligned_cols=241 Identities=9% Similarity=0.054 Sum_probs=163.2
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC--cEEEEECCC
Q 001358 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVT 474 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~ 474 (1092)
..+..++|+|+|+++++...++.|++||..++.... .... ..... ++|+++++ .|+.+..++ .|.+|+..+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~---~~~~-~~~~~-ia~~~~g~--~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT---VHPG-FKGGK-PAVTKDKQ--RVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE---EEET-CCBCB-CEECTTSS--EEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE---eecc-CCCCc-eeEecCCC--cEEEEecCCCceEEEEEcCC
Confidence 468899999999988887778899999998865332 1222 22333 99999999 677777655 799999877
Q ss_pred CceeEEE----ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE----ecCCCCce--EEEEEecCCCEE
Q 001358 475 GSRTYSF----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLGC--TRMAYSANGRRL 544 (1092)
Q Consensus 475 ~~~~~~~----~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~i--~~~~~s~dg~~l 544 (1092)
+.....+ ......+.++++++. ++ .|+.+..++.|..||......... .......- ..++|+|++..|
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~-~g-~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDET-EE-WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTT-SS-EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred CceeEEeeeccchhcCCcEEEEEeCC-CC-eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 6654444 224456777888542 34 455577788999999987654332 22222222 289999975555
Q ss_pred EEEecCCCCceeEEEEeCCCCeEEEEEeecc------------ccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCc
Q 001358 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ 611 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~ 611 (1092)
+.+.. ..+.|+.|+.... +..+.++. ........++++|+++.+++-+ .++.|+.|++.++.
T Consensus 282 yv~d~---~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 282 YMSDQ---NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEET---TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEeC---CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 55532 2567999987644 33343321 0013478999999999777777 88999999987876
Q ss_pred eEEEEeCCC------------CCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358 612 LLTTIDAGG------------GLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 612 ~~~~~~~~~------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
......... .......++++++|.++++-..++.|+.+++
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 544332200 0123578999999888888888888887764
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.22 E-value=5.8e-09 Score=113.87 Aligned_cols=225 Identities=13% Similarity=0.030 Sum_probs=150.0
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
-..+.+|+|++..++.++..++.|..||..+++... + .....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 456789999876688888888999999998875331 1 123579999999999987765
Q ss_pred CCCEEEEEEccCCCCccceEEec-c-cccceeEEEeeCCCCcEEEEEEeC------CCcEEEEECCCCceeEEEecCCcc
Q 001358 416 SKHIVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~l~-~-h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
.++ |.+||..+++... ..... + ....+.+++++|+|+ ++++... .+.|..++ +++.. .+..+...
T Consensus 108 ~~g-l~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DDG-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TTE-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CCC-EEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 444 9999998876321 11111 1 124688999999998 4544432 24555555 45443 33333345
Q ss_pred eEEEeecccCCccEE-EEEecCCeEEEEEcC--CC-Cc-----eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358 488 VYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SL-GA-----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
.+.++|+ ++++.+ ++.+.++.|.+|+++ ++ .. ...+.........+++.++|+..++... .+.|.
T Consensus 181 ~~~i~~s--~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~ 254 (326)
T 2ghs_A 181 PNSICFS--PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVD 254 (326)
T ss_dssp EEEEEEC--TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEE
T ss_pred cCCeEEc--CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEE
Confidence 6678885 466655 444567899999986 43 21 1122223445778999999987776542 34699
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEeCC
Q 001358 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDD 599 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~d 599 (1092)
.||. +++.+..+.... ..+.+++|+ ++++.|++++..
T Consensus 255 ~~d~-~g~~~~~i~~~~---~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEEECCC---CCcEEEEEecCCCCEEEEEecC
Confidence 9998 677777776544 579999998 888877665543
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.21 E-value=7.6e-10 Score=121.94 Aligned_cols=273 Identities=7% Similarity=-0.012 Sum_probs=175.3
Q ss_pred ccEEEEEEecCCcEEEEeec--CCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358 735 NKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 735 ~~i~~l~~s~~g~~l~~~~~--dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
..+..++++++|+.+++... ++.+++|.+... .... ..-|.. ...++-..+..+++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g------~~~~---~p~~~~-----------~~~~~~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD------GLIP---FPPQSG-----------NAIITFDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT------EEEE---SCCCCS-----------SCCCCCSCEEEEEECS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC------Ceec---CCCccc-----------CcccceeEeeEEEEcC
Confidence 46788999999998777542 343677776411 1000 000000 0112556789999999
Q ss_pred CCCEEEEEe------CCeEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCCCEEEEEe---CCCeEEEEEcCCce
Q 001358 813 NDAYLFSAS------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGM---DDSTILIYNARSSE 877 (1092)
Q Consensus 813 dg~~l~~~s------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~~~ 877 (1092)
+|+++++-. ++.|.+||+.+++.+..+..+ ...+..++++++++..+++.. .++.|.+||+.+++
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 998766553 378999999999877766432 235689999983454555555 67899999999988
Q ss_pred eeEeeccccCCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-e
Q 001358 878 VISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H 955 (1092)
Q Consensus 878 ~~~~l~~h~~~V~-~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~ 955 (1092)
....+.+|..... ...++++|..+.+.+.|+.++.|.. .+..++|+|||+.|.++ .
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEES
T ss_pred EEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeC
Confidence 7777766533111 1445567878887888887765531 25689999999988875 3
Q ss_pred CC-cEEEEEcCC---ce-----eeeee-ccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCC
Q 001358 956 ET-HLAIYEAEE---LT-----CLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1092)
Q Consensus 956 d~-~v~lwd~~~---~~-----~~~~~-~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1025 (1092)
.+ .+..++... +. ....+ ..++.+....++++++|.++++...++.|.+||..+|+...... .+
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~-- 288 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DE-- 288 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CG--
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CC--
Confidence 33 455554321 10 00000 11234456789999999999999889999999996676432222 11
Q ss_pred CccCcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001358 1026 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1026 ~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
....+..++++| ++.++++....+.+.+|+
T Consensus 289 ---~~~~p~~va~~~-~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 289 ---KLSWTDSFNFGS-DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ---GGSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred ---ceecCCeeEECC-CCcEEEEeCccccccccc
Confidence 123566889998 477888877665554443
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.20 E-value=1.2e-08 Score=122.54 Aligned_cols=199 Identities=11% Similarity=0.089 Sum_probs=134.0
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcc----------e-EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001358 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----------v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 525 (1092)
.++.++.++.|..+|..+|+.+.++...... + ..+++ ++..++.++.|+.|..+|..+++.+..+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4666777899999999999999887643221 0 11222 3357888899999999999999988876
Q ss_pred cCC-C----CceEEEEEecCCCEEEEEecCCC--CceeEEEEeCCCCeEEEEEeecccc---------------------
Q 001358 526 DAP-G----LGCTRMAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQ--------------------- 577 (1092)
Q Consensus 526 ~~~-~----~~i~~~~~s~dg~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~--------------------- 577 (1092)
... . ..+.+.-.. .+..+++++...+ .++.|+.+|..+|+.+-.+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 654 1 112111111 2345555443211 2578999999999998777643210
Q ss_pred --------CCceEEEEEcCCCCEEEEEeCCC-------------------eEEEEECCCCceEEEEeCCCCC-------C
Q 001358 578 --------HNSVSVVHFDTAKDQILAAGDDH-------------------VIKIWDMNKVQLLTTIDAGGGL-------P 623 (1092)
Q Consensus 578 --------~~~v~~~~~~~~~~~l~~~s~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~ 623 (1092)
......++++|++..++.++.++ .|..+|..+|+.+..+....+. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 01113578889999999887664 5999999999999887753221 1
Q ss_pred CCceEEEccCC---CEEEEEeCCCeEEEEECCCCCeeeec
Q 001358 624 ENPRICFNKNG---TLLAVIANENRIKILETPESNSVDAA 660 (1092)
Q Consensus 624 ~v~~v~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~ 660 (1092)
....+....+| ..+++++.+|.++++|..+++.+...
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence 12223333477 68899999999999999999876654
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.19 E-value=7.6e-09 Score=124.24 Aligned_cols=194 Identities=13% Similarity=0.126 Sum_probs=135.5
Q ss_pred CCeEEEEEcCCceeeEEecCCCCC--------------------------------eEEEEEcCCCCCEEEEEeCCC---
Q 001358 822 GGVISLYIVMTFKTILTIMPPSPT--------------------------------ATSLAFNPHDNNVIAIGMDDS--- 866 (1092)
Q Consensus 822 dg~i~iwd~~~~~~~~~~~~~~~~--------------------------------i~~l~~s~~d~~~lasg~~dg--- 866 (1092)
++.|+.+|..+|+.+.++...... ...++++| ++.+|+.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 467888888888887666432211 13578899 677888887764
Q ss_pred ----------------eEEEEEcCCceeeEeecc--cc-------CCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCC
Q 001358 867 ----------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGW 918 (1092)
Q Consensus 867 ----------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spdg---~~l~s~s~Dg~i~iwd~~~~ 918 (1092)
.|..+|..+|+.+..++. |. ....-+....+| +.++.++.+|.|.++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999999887653 31 122233444477 68999999999999999998
Q ss_pred ceeeeeeeecC--------CCC------------c-----CC-C-CCceEEEEecCCCEEEEE-eC--------------
Q 001358 919 GIQTCRSLQTP--------DGV------------M-----TL-A-PSETHIQFHKDQTRFLLV-HE-------------- 956 (1092)
Q Consensus 919 ~~~~~~~~~~~--------~~~------------~-----~~-~-~~v~~l~~s~dg~~la~~-~d-------------- 956 (1092)
+.......... .+. . .. . ..-..++|+|++.++.+. .+
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 86542221100 000 0 00 0 001367999999888773 21
Q ss_pred -----------------------------CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001358 957 -----------------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 957 -----------------------------~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
+.|..||+.+++.+.... +..++....++.+|..+++++.||.+++||+
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 679999999999876643 3445556667888889999999999999999
Q ss_pred CCCceEEeecc
Q 001358 1008 SNLEVQCRILS 1018 (1092)
Q Consensus 1008 ~~~~~~~~~~~ 1018 (1092)
.+|+.+.++..
T Consensus 506 ~tG~~lw~~~~ 516 (677)
T 1kb0_A 506 ATGEKLWEAPT 516 (677)
T ss_dssp TTCCEEEEEEC
T ss_pred CCCceeeeeeC
Confidence 99999988873
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.18 E-value=7.6e-09 Score=124.50 Aligned_cols=383 Identities=11% Similarity=0.106 Sum_probs=216.4
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcc----------e-EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001358 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----------v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 525 (1092)
.++.++.++.|..+|..+|+.+.++...... + ..+++ ++..++.++.|+.|..+|..+++.+...
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 4677777899999999999999888643321 0 11111 2357888999999999999999988766
Q ss_pred cCC-C-CceEEEEEe---cCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeeccc----------------------
Q 001358 526 DAP-G-LGCTRMAYS---ANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL---------------------- 576 (1092)
Q Consensus 526 ~~~-~-~~i~~~~~s---~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~---------------------- 576 (1092)
... . .....+..+ .++. ++++.... ..++.|+.||..+|+.+-.+.....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 543 1 110111111 2444 44443211 1367899999999999877653110
Q ss_pred ------cCCceEEEEEcCCCCEEEEEeCCCe-------------------EEEEECCCCceEEEEeCCCCC-------CC
Q 001358 577 ------QHNSVSVVHFDTAKDQILAAGDDHV-------------------IKIWDMNKVQLLTTIDAGGGL-------PE 624 (1092)
Q Consensus 577 ------~~~~v~~~~~~~~~~~l~~~s~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~ 624 (1092)
+......++++|++..++.++.++. |..||..+|+.+..+....+. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 0011125788899899999888764 999999999999888753221 01
Q ss_pred CceEEEccCCC---EEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccc
Q 001358 625 NPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 625 v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
........+|+ .++.++.+|.++++|..+++.+......... +...+.+. .+..+
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~~~~---------------------~~~pi 364 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS-WTKGMDMK---------------------TGRPI 364 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS-SEEEEETT---------------------TTEEE
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc-cccccCcc---------------------CCCcc
Confidence 11112223565 7888999999999999999877544321100 00000000 00000
Q ss_pred eeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCc
Q 001358 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1092)
Q Consensus 702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~ 781 (1092)
.... . .|.. +.....+..|.......-..++++|+...+++...+....++......
T Consensus 365 ~~~~----~-~~~~----~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~-------------- 421 (689)
T 1yiq_A 365 LDEE----N-AAYW----KNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP-------------- 421 (689)
T ss_dssp ECHH----H-HCTT----TSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC--------------
T ss_pred cchh----h-cccc----CCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc--------------
Confidence 0000 0 0000 000111122222222233458899998888887776544443321100
Q ss_pred cccCCCCCceeeecCCCCCCCCCeeEEEEecC---CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC
Q 001358 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN---DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 857 (1092)
Q Consensus 782 ~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~d---g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~ 857 (1092)
.|....+. . ..... +...|. +....... +|.|..||+.+++.+..+..+.. ...-.++. .+.
T Consensus 422 ~~~~~~~~-~---------~~g~~--~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agg 487 (689)
T 1yiq_A 422 KRNPFKSM-Y---------QLGLR--TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGN 487 (689)
T ss_dssp CCCSCTTS-C---------CCSSE--ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTT
T ss_pred cccccccc-c---------ccCcc--ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceE-CCC
Confidence 01110000 0 00000 000000 00000001 37899999999999888765432 22334555 566
Q ss_pred EEEEEeCCCeEEEEEcCCceeeEeeccccCC-eEEEEEcCCCCEEEE
Q 001358 858 VIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 903 (1092)
Q Consensus 858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s 903 (1092)
++++|+.||.++.||.++|+.+.+++...+. ..-+.|+.||+..+.
T Consensus 488 lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 488 LVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 9999999999999999999999888754332 234677788875443
No 230
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.18 E-value=1.9e-05 Score=93.16 Aligned_cols=520 Identities=8% Similarity=-0.021 Sum_probs=270.6
Q ss_pred CCEEEEEEccCCC-CccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce-eEEEecCCcceEEEeec
Q 001358 417 KHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 417 d~~i~iwd~~~~~-~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~i~~~ 494 (1092)
...|+..++.+.. ... .+...-.....++|++.+.. ++++-...+.|..++++.... ...+.........+++.
T Consensus 17 ~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD 92 (619)
T 3s94_A 17 RRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 92 (619)
T ss_dssp SSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred cccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence 4457888877542 111 11223345778999997774 445555677899999876532 22333333567788885
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001358 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
+. ++.+.++-...+.|.+.+++.................+++.|.+.+|+..-.. ....|...++............
T Consensus 93 ~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~~ 169 (619)
T 3s94_A 93 WL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINSE 169 (619)
T ss_dssp TT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECSS
T ss_pred ec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeCC
Confidence 53 34566666778899999998765544443444456789999987666655321 1346777776543332222222
Q ss_pred cccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358 575 QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
......+++++++..|+.+. ..+.|...|+............ ......+++..+ ..+++-...+.|...|..+
T Consensus 170 ---~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~t 243 (619)
T 3s94_A 170 ---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYT 243 (619)
T ss_dssp ---CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSS
T ss_pred ---CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCC
Confidence 25678999999877777654 5677888888654433322211 123457787665 4444445578899999887
Q ss_pred CCeeeecccccccceeeeec-CCccccc--ccc---cC-CceeecCCCCCCcccceeeccccccceeceeeccCccceec
Q 001358 654 SNSVDAAGVLSDNLRKLSVN-PISTVTG--AGI---AN-GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1092)
Q Consensus 654 ~~~~~~~~~~~~~v~~~~~~-~~~~~~~--~~~---~~-~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 726 (1092)
++....+.........+++. +.....+ .+. +. ....+. +|......+...+|....
T Consensus 244 g~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~---~~~~~~~~C~C~~g~~l~-------------- 306 (619)
T 3s94_A 244 GEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLM---SPVKPFYQCACPTGVKLL-------------- 306 (619)
T ss_dssp CCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEE---CSSTTSEEEECCTTCCBC--------------
T ss_pred CcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEEC---CCCCCCceEeCCchheec--------------
Confidence 76555444332223333332 1110000 000 00 000110 010000000000000000
Q ss_pred ccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001358 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1092)
Q Consensus 727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~ 806 (1092)
.....|. +..+.++..+..+.|+..++..... . .....+. .-..+.
T Consensus 307 -------~d~~~C~---~~~~~~Ll~~~~~~i~~i~l~~~~~--------------------~-~~~~~~~---~l~~~~ 352 (619)
T 3s94_A 307 -------ENGKTCK---DGATELLLLARRTDLRRISLDTPDF--------------------T-DIVLQLE---DIRHAI 352 (619)
T ss_dssp -------TTSSCBC---SSCSEEEEEEESSCEEEEESSSTTC--------------------C-CEECCCS---CCSSEE
T ss_pred -------ccCcccC---CCCceEEEEEcccceEEEecCCCcc--------------------c-eeEEecc---ccCccE
Confidence 0000000 0011222223334444444332110 0 0011111 223467
Q ss_pred EEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee-c
Q 001358 807 CFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-E 883 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~ 883 (1092)
.++|.+.+..|..+. .+.|..++.........+...-.....+|+.+.++++.++-+..+.|.+.++.... ...+ .
T Consensus 353 ~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~ 431 (619)
T 3s94_A 353 AIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILIS 431 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC
T ss_pred EEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEE
Confidence 899998776666665 57899998875443333433335667899986355566666667899999987543 3333 3
Q ss_pred cccCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCCcE
Q 001358 884 GHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHL 959 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~v 959 (1092)
..-....+|++.|....|..+.. ...|...+++...... ... ... .....+++++++..|..+ ..+.|
T Consensus 432 ~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~--l~~---~~l---~~P~GlalD~~~~~LY~aD~~~~~I 503 (619)
T 3s94_A 432 EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV--LVN---TSL---GWPNGLALDYDEGKIYWGDAKTDKI 503 (619)
T ss_dssp TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EEC---SSC---SCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE--EEe---CCC---CCCeeeEEcccCCEEEEEECCCCEE
Confidence 34456889999997444444432 3566666766533211 111 111 257899999988887775 44678
Q ss_pred EEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001358 960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~ 1011 (1092)
..+++.... ...+.........+++...+ ...++-...+.|..-+..+|.
T Consensus 504 ~~~~~dG~~-~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 504 EVMNTDGTG-RRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEESSSCC-CEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred EEEecCCCc-eEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 888886433 33322222222344555433 344444445677777877773
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.17 E-value=6.5e-08 Score=108.20 Aligned_cols=151 Identities=15% Similarity=0.071 Sum_probs=99.9
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCC---------cceE-EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001358 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG---------APVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---------~~v~-~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 526 (1092)
.++.++.++.|..+|.++|+.+....... ..+. .... ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 47778889999999999999987765422 2222 2222 33578888999999999999988877665
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC--CceEEEEEcCCCCEEEEEeCCCeEEE
Q 001358 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
........... .+ ..+++++. ++.|+.+|..+|+.+..+....... ......... +..+++++.++.+..
T Consensus 131 ~~~~~~~~p~~-~~-~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVV-SD-GLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEE-ET-TEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEE-EC-CEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 44322111222 23 35555543 5679999999999887766533000 000111222 457888888999999
Q ss_pred EECCCCceEEEEeCC
Q 001358 605 WDMNKVQLLTTIDAG 619 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~ 619 (1092)
+|..+|+.+......
T Consensus 203 ~d~~tG~~~w~~~~~ 217 (376)
T 3q7m_A 203 VLMEQGQMIWQQRIS 217 (376)
T ss_dssp EETTTCCEEEEEECC
T ss_pred EECCCCcEEEEEecc
Confidence 999999988777643
No 232
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.17 E-value=4.7e-10 Score=122.51 Aligned_cols=176 Identities=12% Similarity=0.048 Sum_probs=132.9
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCC--------ccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
.++.+++++...++++|+.++ +.+|+++.... ..... ...+.. |++++| |++ +|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HGD--QVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ETT--EEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CCC--EEEEE-cCCcEEE
Confidence 689999999999999999986 67799764330 11111 224666 999999 888 67777 7899999
Q ss_pred EECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEec
Q 001358 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
||+.+.........|..++.++.+.+. .+++++.||.+.+||+....... ....|++++|||+| ++.+..
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~ 180 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLK 180 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEET
T ss_pred EEchhhhccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEc
Confidence 999887766677778888888776432 28889999999999998766543 33589999999999 455554
Q ss_pred CCCCceeEEEEeCCCCeE--EEEEeec------cccCCceEEEEEcCCCCEEEE
Q 001358 550 SKEGESFLVEWNESEGAI--KRTYQGL------QLQHNSVSVVHFDTAKDQILA 595 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~--~~~~~~~------~~~~~~v~~~~~~~~~~~l~~ 595 (1092)
++.+++|+...+.. .+++... ..+...|.++.|.+++.++++
T Consensus 181 ----dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 181 ----DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ----TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ----CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 56699999888875 5566211 012478999999999888776
No 233
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.17 E-value=1.3e-08 Score=111.12 Aligned_cols=225 Identities=10% Similarity=0.009 Sum_probs=145.3
Q ss_pred EEEEEEecCCcEE-EEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001358 737 ISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 737 i~~l~~s~~g~~l-~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
..+.+|++++..+ ++...++.|..|+.... . ..... ....+.+++++++|+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~----------------------~-~~~~~-----~~~~v~~i~~~~dg~ 102 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASG----------------------R-KTVHA-----LPFMGSALAKISDSK 102 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTT----------------------E-EEEEE-----CSSCEEEEEEEETTE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCC----------------------c-EEEEE-----CCCcceEEEEeCCCe
Confidence 4567899975544 44445677777764322 1 11111 234688999999999
Q ss_pred EEEEEeCCeEEEEEcCCceeeEEecC----CCCCeEEEEEcCCCCCEEEEEeC------CCeEEEEEcCCceeeEeeccc
Q 001358 816 YLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMD------DSTILIYNARSSEVISKLEGH 885 (1092)
Q Consensus 816 ~l~~~sdg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~------dg~v~iwd~~~~~~~~~l~~h 885 (1092)
++++. ++.|.+||..+++....... ....+..++++| +++++++... .+.|..++ +++.. .+..+
T Consensus 103 l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~ 177 (326)
T 2ghs_A 103 QLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD 177 (326)
T ss_dssp EEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE
T ss_pred EEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC
Confidence 87765 55599999988775433221 123578999999 7877665442 24566666 45543 33334
Q ss_pred cCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcC--CC-ceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEE
Q 001358 886 SKRVTGLVFSDALNILVSS-GGDAQIFVWDVD--GW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 960 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~-s~Dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~ 960 (1092)
......++|+||++.|..+ +.++.|.+|++. ++ +......+....... ..+..+++.++|.+.++. .++.|.
T Consensus 178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~ 254 (326)
T 2ghs_A 178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVD 254 (326)
T ss_dssp ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEE
T ss_pred CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEE
Confidence 4567889999999876554 457889999986 54 322212222222111 246789999999987775 467899
Q ss_pred EEEcCCceeeeeeccCCCcCEEEEEEe-cCCCEEEEEeCC
Q 001358 961 IYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVD 999 (1092)
Q Consensus 961 lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~s~D 999 (1092)
+||. +++.+..+ ..+...+++++|+ +|++.|++++..
T Consensus 255 ~~d~-~g~~~~~i-~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARY-EVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEE-ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEE-ECCCCCcEEEEEecCCCCEEEEEecC
Confidence 9998 56665553 3445679999999 898877655544
No 234
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.17 E-value=7.4e-09 Score=111.98 Aligned_cols=232 Identities=14% Similarity=0.084 Sum_probs=152.1
Q ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEEC
Q 001358 394 DPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 472 (1092)
.........+|+|+|+ ++++...++.|..|+.. ++ .. .+..+...+..++++++|+ ++++...++.|.+||.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECC
Confidence 3455677899999999 55566677899999984 43 22 3445667789999999998 5666556678999997
Q ss_pred CCCceeEEEecC----CcceEEEeecccCCccEEEE----Eec-------------CCeEEEEEcCCCCceEEecCCCCc
Q 001358 473 VTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFS----ISV-------------DGKIKAWLYDSLGARVDYDAPGLG 531 (1092)
Q Consensus 473 ~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~l~s----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~ 531 (1092)
+ ++........ ...++.+++. ++|.++++ |.. .+.|..+|..+++..... ....
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred C-CCEEEEEeccCCCccCCCCCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 6 6533222111 1235567774 57777776 322 245666666555543332 3345
Q ss_pred eEEEEEecCCCEEEEEecCC--CCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358 532 CTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
...++|+||++.|+.+.... .+.+.|+.|++..+... ..+... .......+++.++|+ +.+++.+ .|.+|+.
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~ 265 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS 265 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSC-EEECCSS-EEEEECT
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCC-EEEecCC-cEEEECC
Confidence 67899999999887765421 01257999998765421 111111 124456788999998 4554444 4999998
Q ss_pred CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001358 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1092)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1092)
+++.+..+..+. .+..++|+++++.|.+++.++.
T Consensus 266 -~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 266 -DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp -TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEE
T ss_pred -CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeE
Confidence 577777776554 3789999999998988887643
No 235
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.13 E-value=7.8e-08 Score=107.56 Aligned_cols=276 Identities=11% Similarity=0.039 Sum_probs=172.0
Q ss_pred EEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC
Q 001358 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 429 (1092)
Q Consensus 350 lasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 429 (1092)
+.+++.++.|..+|..+|+.+-...+.... .. .......+.+ ....++..+++++.++.|..+|..+|+
T Consensus 56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~------~~----~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 56 VYAADRAGLVKALNADDGKEIWSVSLAEKD------GW----FSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC---------C----CSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred EEEEcCCCeEEEEEccCCceeeeecCcccc------cc----ccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 556677889999999999877543221000 00 0000122222 122246678888899999999999997
Q ss_pred CccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce-----EEEeecccCCccEEEE
Q 001358 430 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----YSLCPHAKENIHFIFS 504 (1092)
Q Consensus 430 ~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~~~l~s 504 (1092)
.+-. .............. ++ .++.++.++.|..+|..+|+.+.......... ..... .+..++.
T Consensus 125 ~~W~---~~~~~~~~~~p~~~-~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~----~~~~v~~ 193 (376)
T 3q7m_A 125 VAWQ---TKVAGEALSRPVVS-DG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT----AFGAAVV 193 (376)
T ss_dssp EEEE---EECSSCCCSCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE----ETTEEEE
T ss_pred EEEE---EeCCCceEcCCEEE-CC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE----ECCEEEE
Confidence 5532 22222111122222 34 47778889999999999999988776433221 11112 1246788
Q ss_pred EecCCeEEEEEcCCCCceEEecCCCCc----------eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001358 505 ISVDGKIKAWLYDSLGARVDYDAPGLG----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 505 ~~~dg~i~vwd~~~~~~~~~~~~~~~~----------i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
++.++.+..+|..+++........... +...... .+..++.++. ++.++.+|..+|+.+.....
T Consensus 194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~----~g~l~~~d~~tG~~~w~~~~- 267 (376)
T 3q7m_A 194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALAY----NGNLTALDLRSGQIMWKREL- 267 (376)
T ss_dssp CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEECT----TSCEEEEETTTCCEEEEECC-
T ss_pred EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEEec----CcEEEEEECCCCcEEeeccC-
Confidence 888999999999988877665432210 0000011 2445555543 45699999999988766543
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.....+.. ++..+++++.++.+..+|..+++.+........ ..+..... .+..+++++.+|.+..+|..++
T Consensus 268 ----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 268 ----GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp ----CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEECTTSEEEEEETTTC
T ss_pred ----CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEeCCCeEEEEECCCC
Confidence 22333333 467888899999999999999998877752211 11222333 2568888999999999999999
Q ss_pred Ceeeeccc
Q 001358 655 NSVDAAGV 662 (1092)
Q Consensus 655 ~~~~~~~~ 662 (1092)
+.+.....
T Consensus 339 ~~~~~~~~ 346 (376)
T 3q7m_A 339 RFVAQQKV 346 (376)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEec
Confidence 87765543
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.12 E-value=8.7e-08 Score=104.33 Aligned_cols=233 Identities=14% Similarity=0.109 Sum_probs=151.2
Q ss_pred EEe--cCCCEEEEEe--CCeEEEEEcCCc----eeeEEec------C-CCCCeEEEEEcCCCCCEEEEEeCC------Ce
Q 001358 809 ALS--KNDAYLFSAS--GGVISLYIVMTF----KTILTIM------P-PSPTATSLAFNPHDNNVIAIGMDD------ST 867 (1092)
Q Consensus 809 ~~s--~dg~~l~~~s--dg~i~iwd~~~~----~~~~~~~------~-~~~~i~~l~~s~~d~~~lasg~~d------g~ 867 (1092)
.++ +++++|++.+ +++|.++|+.+. +...++. . ....-..+.++| ++ +++++..+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 346 8899998887 588999999765 6666663 1 112446678899 77 66666555 78
Q ss_pred EEEEEcCCceeeEeeccccC---CeEEEEEcCCCCEEEEEe-------------------CCCcEEEEEcCCCceeeeee
Q 001358 868 ILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSG-------------------GDAQIFVWDVDGWGIQTCRS 925 (1092)
Q Consensus 868 v~iwd~~~~~~~~~l~~h~~---~V~~l~~spdg~~l~s~s-------------------~Dg~i~iwd~~~~~~~~~~~ 925 (1092)
|.++|..+.+.+.++..-.+ --..+.|+|+++.+++.. .+.+|.+||+.+++... .
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t 243 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S 243 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence 99999999999999873222 234588899999999874 36789999999864333 2
Q ss_pred eecCCCCcCCCCCceEEEE--ecCCCEEEEE-------eCCcEEEEEcCCceeeeee---ccC----------------C
Q 001358 926 LQTPDGVMTLAPSETHIQF--HKDQTRFLLV-------HETHLAIYEAEELTCLKQW---FPI----------------S 977 (1092)
Q Consensus 926 ~~~~~~~~~~~~~v~~l~~--s~dg~~la~~-------~d~~v~lwd~~~~~~~~~~---~~~----------------h 977 (1092)
+....... ....+.| +|+|+++.++ .+++|.+|....++..... ... -
T Consensus 244 I~vg~~g~----~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLGEENR----MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESCTTEE----EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecCCCCC----ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 33321111 2445655 9999988873 3357777665444211110 000 0
Q ss_pred CcCEEEEEEecCCCEEEEEeC-CCcEEEEECCC---CceEEeeccccccCCCCc----cCcccceEEEECCCCCCEEEEE
Q 001358 978 SVPISQATFSCDCRMVFTSFV-DGTLSIHEASN---LEVQCRILSTAYLRPTTS----CLHVYPHAIAAHPLKPTQFAVG 1049 (1092)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~s~-Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~p~~~~~l~~~ 1049 (1092)
...+..+.+|+||++|.++.. .+.|.++|+.. .+++..+..........| .....+..++++| |+++|.++
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVa 398 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVT 398 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEE
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEE
Confidence 245788999999999987765 57899999863 355555543321100000 0011466789999 57888888
Q ss_pred e
Q 001358 1050 L 1050 (1092)
Q Consensus 1050 ~ 1050 (1092)
.
T Consensus 399 N 399 (462)
T 2ece_A 399 N 399 (462)
T ss_dssp C
T ss_pred c
Confidence 7
No 237
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.10 E-value=1.6e-08 Score=121.65 Aligned_cols=290 Identities=12% Similarity=0.057 Sum_probs=180.6
Q ss_pred EEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC-cE-EEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001358 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SV-NRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1092)
Q Consensus 350 lasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~-~V-~~l~~spdg~~las~~~d~~i~iwd~~~ 427 (1092)
+.+++.++.|.-+|..+|+.+-.+....- ... ...... .+ ..+++ ++..|++++.|+.|..+|..+
T Consensus 73 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~-----~~~-----~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~T 140 (689)
T 1yiq_A 73 MYTTGPFSVVYALDARDGRLIWKYDPQSD-----RHR-----AGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKT 140 (689)
T ss_dssp EEEECGGGCEEEEETTTCCEEEEECCCCC-----GGG-----GGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred EEEEcCCCeEEEEECCCCceeEEEcCCCC-----ccc-----cccccccCCCCccEE--ECCEEEEEccCCEEEEEECCC
Confidence 55566789999999999998765332100 000 000000 00 01122 467888888999999999999
Q ss_pred CCCccceEEecccccceeEEEeeC---CCCcEEEEEEe-----CCCcEEEEECCCCceeEEEecCC-c------------
Q 001358 428 GSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHG-A------------ 486 (1092)
Q Consensus 428 ~~~~~~~~~l~~h~~~v~~~~~s~---d~~~l~l~s~~-----~d~~i~vwd~~~~~~~~~~~~~~-~------------ 486 (1092)
|+.+-.... ..+......+..+| ++. +++..+ .++.|+.||.++|+.+..+.... .
T Consensus 141 G~~~W~~~~-~~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 217 (689)
T 1yiq_A 141 GQRAWSVDT-RADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI 217 (689)
T ss_dssp CCEEEEEEC-CSCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred CCEeeeecC-cCCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence 986543211 10111111111122 554 333322 37899999999999998775211 0
Q ss_pred ------------------ceEEEeecccCCccEEEEEecCCe-------------------EEEEEcCCCCceEEecCCC
Q 001358 487 ------------------PVYSLCPHAKENIHFIFSISVDGK-------------------IKAWLYDSLGARVDYDAPG 529 (1092)
Q Consensus 487 ------------------~v~~i~~~~~~~~~~l~s~~~dg~-------------------i~vwd~~~~~~~~~~~~~~ 529 (1092)
....+++ +++..+++.++.++. |..+|.++++.+..+....
T Consensus 218 ~~~~~~g~~w~~~~~g~~~w~~~~~--d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~ 295 (689)
T 1yiq_A 218 AAKTWFGDAYVEQGGGGTAWDSFAY--DPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP 295 (689)
T ss_dssp HHTTCCSSTHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred cccccCCceeeecCCCCccccceeE--cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC
Confidence 0012344 334567888887764 9999999999887665421
Q ss_pred ---------CceEEEEEecCCC---EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc---------------------
Q 001358 530 ---------LGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--------------------- 576 (1092)
Q Consensus 530 ---------~~i~~~~~s~dg~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--------------------- 576 (1092)
.+........+|+ .++.+.. ++.++++|..+|+.+........
T Consensus 296 ~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 296 GDAWDYTATQHMILAELPIDGKPRKVLMQAPK----NGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp TCCSCCCCCSCEEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred cccccccCCCCcEEEeeccCCcEEEEEEEECC----CCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 1122222334665 5555543 77899999999998744322110
Q ss_pred ---------------cCCceEEEEEcCCCCEEEEEeC-------------------------------------------
Q 001358 577 ---------------QHNSVSVVHFDTAKDQILAAGD------------------------------------------- 598 (1092)
Q Consensus 577 ---------------~~~~v~~~~~~~~~~~l~~~s~------------------------------------------- 598 (1092)
....-..++++|+...+++...
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~ 451 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK 451 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence 0000112688888888877532
Q ss_pred --CCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccc
Q 001358 599 --DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 663 (1092)
Q Consensus 599 --dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 663 (1092)
+|.|+.||+.+|+.+.....+.. +....+...+.++++++.||.++.||..+++.+..++..
T Consensus 452 ~~~g~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 452 SWSGKLIAWDPVKQQAAWEVPYVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp TCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CcceeEEEEECCCCCeEeEccCCCC---ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 37899999999999988876532 334466677889999999999999999999988777644
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.05 E-value=8.4e-09 Score=113.17 Aligned_cols=301 Identities=11% Similarity=0.049 Sum_probs=176.6
Q ss_pred EEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001358 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1092)
Q Consensus 446 ~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 525 (1092)
+..+..++. +..++.++.|..|| .+++.+.....+...+.++.. ..++ .+..++.+ +..+|. +++....+
T Consensus 24 ~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g-~l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 24 SPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDG-TIYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTT-EECCSSCE--EEEECC-CGGGGGGS
T ss_pred CceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCC-cEEEecCc--EEEECC-CCcEEEEE
Confidence 445556665 66677888999999 888887665544444555554 3344 45555544 777775 33333333
Q ss_pred cCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001358 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1092)
Q Consensus 526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1092)
...........+. + ..+..++. ++.|+.+|.. ++......... ..+.++...+++. ++.++.++.|..+
T Consensus 94 ~~~~~~~~~~~~~-~-~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~-l~vgt~~~~l~~~ 162 (330)
T 3hxj_A 94 DTKKAIVSDFTIF-E-DILYVTSM----DGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGT-IYVGSNDNYLYAI 162 (330)
T ss_dssp CC-----CCEEEE-T-TEEEEECT----TSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSC-EEEECTTSEEEEE
T ss_pred ECCCCcccCceEE-C-CEEEEEec----CCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCE-EEEEcCCCEEEEE
Confidence 3222222223333 4 44555543 4569999988 77766655433 4455666666665 6778888999999
Q ss_pred ECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccC
Q 001358 606 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1092)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 685 (1092)
|.. ++......... ..+.++...+++.+.+ ++ +.+..++ .+++.......
T Consensus 163 d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~----------------------- 212 (330)
T 3hxj_A 163 NPD-GTEKWRFKTND--AITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYA----------------------- 212 (330)
T ss_dssp CTT-SCEEEEEECSS--CCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECC-----------------------
T ss_pred CCC-CCEeEEEecCC--CceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEcc-----------------------
Confidence 998 87776665442 2356666666666443 33 5566665 33221111000
Q ss_pred CceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecC
Q 001358 686 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1092)
Q Consensus 686 ~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~ 765 (1092)
T Consensus 213 -------------------------------------------------------------------------------- 212 (330)
T 3hxj_A 213 -------------------------------------------------------------------------------- 212 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCC
Q 001358 766 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT 845 (1092)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~ 845 (1092)
....+.++++.++|.+.+...++.+..+|. +++.+..+......
T Consensus 213 -----------------------------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~ 256 (330)
T 3hxj_A 213 -----------------------------------GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRI 256 (330)
T ss_dssp -----------------------------------SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCC
T ss_pred -----------------------------------CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCc
Confidence 111233444555555554444556666653 34444444433333
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001358 846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~ 917 (1092)
+.++.+.+ ++ .|.+++.+|.+..+|. +++.+..+......+.++...++|++. .++.+|.+++...+.
T Consensus 257 ~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 257 ESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFNLE 324 (330)
T ss_dssp CSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC--
T ss_pred cccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEeccc
Confidence 44556665 45 5667888989999996 677777666556667778887787654 588999998887665
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.05 E-value=4.9e-08 Score=106.25 Aligned_cols=239 Identities=12% Similarity=0.078 Sum_probs=153.6
Q ss_pred eec--CCCceEEEEEcCcCcEEEEecCCCC--ceeeeeeeeeecccccceeEEeeecC-CCCcEEEEEECCCCCEEEEEe
Q 001358 341 DFH--PVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 341 ~~s--pdg~~llasg~~d~~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~las~~ 415 (1092)
+++ ++++++++.|..++.|.|+|+.+.. ......++.-+ +... .......+..+||| .++++.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~-----------~~~~~g~s~Ph~~~~~pdG-i~Vs~~ 155 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEE-----------VKKVSGYSRLHTVHCGPDA-IYISAL 155 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHH-----------HHHHHCEEEEEEEEECSSC-EEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhh-----------cccccCCCcccceeECCCe-EEEEcC
Confidence 447 9999989999999999999997552 11111110000 0000 11245668899999 666654
Q ss_pred CC------CEEEEEEccCCCCccceEEecccc-cceeEEEeeCCCCcEEEEEEe-------------------CCCcEEE
Q 001358 416 SK------HIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG-------------------DDKTIKV 469 (1092)
Q Consensus 416 ~d------~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~l~l~s~~-------------------~d~~i~v 469 (1092)
.+ +.|.+.|.++++.+.... ..... .--..+.|+|+++ .+++.. ...+|.+
T Consensus 156 g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v 232 (462)
T 2ece_A 156 GNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF 232 (462)
T ss_dssp EETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred CCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEE
Confidence 44 689999999987665321 11222 2233588899999 677764 3689999
Q ss_pred EECCCCceeEEEecC-C-cceEEEeecccCCccEEEEEe------cCCeEEEEEcCCCCce--EE--ecCC---------
Q 001358 470 WDAVTGSRTYSFEGH-G-APVYSLCPHAKENIHFIFSIS------VDGKIKAWLYDSLGAR--VD--YDAP--------- 528 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~-~-~~v~~i~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~--~~--~~~~--------- 528 (1092)
||+.+++.+.++... . .....+.|..++++++++.++ .+++|.+|..+.+.-. .. +...
T Consensus 233 ~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 233 WDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp EETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGG
T ss_pred EECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccc
Confidence 999999888888653 1 234456666677888777766 4668877766542110 11 1110
Q ss_pred -------CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC---CCeEEEEEeeccc-----------cCCceEEEEEc
Q 001358 529 -------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES---EGAIKRTYQGLQL-----------QHNSVSVVHFD 587 (1092)
Q Consensus 529 -------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~---~~~~~~~~~~~~~-----------~~~~v~~~~~~ 587 (1092)
......+.+|+||++|+++.. +.+.|.++|+. +.+.+..+..... -.+....++++
T Consensus 313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS 389 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS 389 (462)
T ss_dssp GGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred ccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence 234678999999999998764 35679999985 2345544443200 00135788999
Q ss_pred CCCCEEEEEe
Q 001358 588 TAKDQILAAG 597 (1092)
Q Consensus 588 ~~~~~l~~~s 597 (1092)
|||++++++.
T Consensus 390 pDGk~LyVaN 399 (462)
T 2ece_A 390 RDGRRVYVTN 399 (462)
T ss_dssp TTSSEEEEEC
T ss_pred CCCCEEEEEc
Confidence 9999999987
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.03 E-value=7.1e-08 Score=108.98 Aligned_cols=346 Identities=11% Similarity=0.044 Sum_probs=199.4
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe----------cCCeEEEEEcCCCCceEE
Q 001358 455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------VDGKIKAWLYDSLGARVD 524 (1092)
Q Consensus 455 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~ 524 (1092)
++.+.||+..|.++|+-+.+++.++.+......-. .-|-.+.....++..+ .+|. . .
T Consensus 15 ~~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~-~g~g~~~es~~~l~~~~~~~~~~~~~~~g~----------~--~ 81 (595)
T 1fwx_A 15 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAANGK----------R--I 81 (595)
T ss_dssp EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCCHHHHHHHHHTTC----------S--S
T ss_pred EEEEeeCCcCceEEEEecCCcceEEEeeeecCCCC-cccCCchhHHHHHhccCCccchhhhhccCc----------e--e
Confidence 44688999999999999999999988863221000 0000000000000000 0010 0 0
Q ss_pred ecCCCCceEEEEE---ecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEE-c-CCCCEEEEEe--
Q 001358 525 YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-D-TAKDQILAAG-- 597 (1092)
Q Consensus 525 ~~~~~~~i~~~~~---s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~s-- 597 (1092)
+......-..+++ .+||++++.+.. .+..|.+.|+.+.++.+.+.-.. ......+++ . |+++++++++
T Consensus 82 ~~~gd~hh~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~ 156 (595)
T 1fwx_A 82 HDNGDLHHVHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGED 156 (595)
T ss_dssp CCCCCBCCEEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECS
T ss_pred cccCCCCccccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEeccc
Confidence 0000111122333 348999998753 36679999999999888664332 245778887 5 9999999985
Q ss_pred ----------------CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecc
Q 001358 598 ----------------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 598 ----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
.++.+.+.|.++.+...++...+. ...++++|+|+++++.+.+... +..+....
T Consensus 157 ~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~~~i~~~~ 226 (595)
T 1fwx_A 157 ETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------GMTLPEMT 226 (595)
T ss_dssp CEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------CSSHHHHT
T ss_pred ccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------Ccchhhcc
Confidence 345799999999999998886542 4678999999999999876321 00000000
Q ss_pred cccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEE
Q 001358 662 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 741 (1092)
Q Consensus 662 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 741 (1092)
. .....+.+-.... .. .
T Consensus 227 ~--~~~d~v~V~~~~~-----------------------~~--------------------------------------~ 243 (595)
T 1fwx_A 227 A--AEMDHIVVFNIAE-----------------------IE--------------------------------------K 243 (595)
T ss_dssp C--CSEEEEEEEEHHH-----------------------HH--------------------------------------H
T ss_pred c--cccceEEEeeccc-----------------------ee--------------------------------------E
Confidence 0 0000000000000 00 0
Q ss_pred EecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCc-eeeecCCCCCCCCCeeEEEEecCCCEEEEE
Q 001358 742 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCFALSKNDAYLFSA 820 (1092)
Q Consensus 742 ~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~ 820 (1092)
+.++|+.... +.+.+.|....+ +.. +.... -.....++.++|||++++++
T Consensus 244 ~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip-----vg~~PhGv~~sPDGk~v~V~ 294 (595)
T 1fwx_A 244 AIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP-----IANNPHGCNMAPDKKHLCVA 294 (595)
T ss_dssp HHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE-----EESSCCCEEECTTSSEEEEE
T ss_pred eccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe-----cCCCceEEEEcCCCCEEEEe
Confidence 0111111111 223333322100 111 11111 12244578999999999988
Q ss_pred e--CCeEEEEEcCCce------------eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------c
Q 001358 821 S--GGVISLYIVMTFK------------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------S 876 (1092)
Q Consensus 821 s--dg~i~iwd~~~~~------------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~----------~ 876 (1092)
+ +++|.++|+.+.+ ..... .-......++|+| +|...++..-|+.|.+||+.+ .
T Consensus 295 ~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~ 372 (595)
T 1fwx_A 295 GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD 372 (595)
T ss_dssp CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCC
T ss_pred CCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccc
Confidence 7 5889999998663 22233 2335678999999 776666777899999999987 4
Q ss_pred eeeEeeccccCCe-----EEEEEcCCCCEEEEEeC---CCc----------EEEEEcCCCceee
Q 001358 877 EVISKLEGHSKRV-----TGLVFSDALNILVSSGG---DAQ----------IFVWDVDGWGIQT 922 (1092)
Q Consensus 877 ~~~~~l~~h~~~V-----~~l~~spdg~~l~s~s~---Dg~----------i~iwd~~~~~~~~ 922 (1092)
+.+.++..|-.+- .++.++|||++|+++.. |+. -.++|+++++...
T Consensus 373 ~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l 436 (595)
T 1fwx_A 373 PIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL 436 (595)
T ss_dssp CEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred eeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence 5677776664432 12355899999998753 542 1889997665433
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.02 E-value=1.1e-08 Score=112.36 Aligned_cols=269 Identities=12% Similarity=0.063 Sum_probs=173.3
Q ss_pred eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001358 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d 417 (1092)
....+..+|. +..|+.++.|..|| .+++.+... ..+...+.++...++|.+.+ ++.+
T Consensus 23 ~~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~~-------------------~~~~~~~~~~~~~~~g~l~v-~t~~ 79 (330)
T 3hxj_A 23 SSPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWFF-------------------KSGEIIECRPSIGKDGTIYF-GSDK 79 (330)
T ss_dssp CCCEECTTSC--EECSSTTTTTEEEC-TTSCEEESS-------------------CGGGEEEECCEETTTTEECC-SSCE
T ss_pred cCceEccCCe--EEEEcCCCEEEEEC-CCCcEEEEE-------------------ecCCCcccceEEecCCcEEE-ecCc
Confidence 4556667786 45666788999999 888765431 11234456777777776444 4333
Q ss_pred CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccC
Q 001358 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1092)
Q Consensus 418 ~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 497 (1092)
|..+|. +++.+.. +...........+. ++ .+..++.++.|..+|.. ++.......+...+.++.. .+
T Consensus 80 --l~~~d~-~g~~~~~---~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~ 146 (330)
T 3hxj_A 80 --VYAINP-DGTEKWR---FDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SE 146 (330)
T ss_dssp --EEEECC-CGGGGGG---SCC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CT
T ss_pred --EEEECC-CCcEEEE---EECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cC
Confidence 888886 5544332 11122223333343 44 47778889999999988 8877777655555555554 33
Q ss_pred CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc
Q 001358 498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577 (1092)
Q Consensus 498 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 577 (1092)
++ .+..++.++.|..+|.. +.....+......+.++.+.++|...+.. +.|+.+| .+++....+....
T Consensus 147 ~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-------~~l~~~d-~~g~~~~~~~~~~-- 214 (330)
T 3hxj_A 147 DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-------DKVYAIN-PDGTEKWNFYAGY-- 214 (330)
T ss_dssp TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-------SSEEEEC-TTSCEEEEECCSS--
T ss_pred CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-------CEEEEEC-CCCcEEEEEccCC--
Confidence 44 46678888999999988 66665665555566677777888766554 2399999 7777666555433
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCee
Q 001358 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1092)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 657 (1092)
..+.++...+++ .+.+++.++.+..+|. +++.+........ .+..+.+.+++ .+.+++.+|.+..++. +++..
T Consensus 215 -~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 215 -WTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp -CCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred -cceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence 567777888776 5667777888888874 5666666654432 23455666555 5667888889999985 55555
Q ss_pred eecc
Q 001358 658 DAAG 661 (1092)
Q Consensus 658 ~~~~ 661 (1092)
....
T Consensus 288 ~~~~ 291 (330)
T 3hxj_A 288 WNFE 291 (330)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.97 E-value=7.2e-10 Score=123.09 Aligned_cols=192 Identities=8% Similarity=-0.022 Sum_probs=113.1
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001358 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
++..+++++.|+.|+.||..+|+.+- .+.. +.+.+..+..++. ++++++.|+.|+.||.++|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 68899999999999999999997654 3333 4566666677777 577778999999999999998877654322
Q ss_pred ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001358 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
.......... ++..+++++.++.+..||..+++....+..+. ...++|++..+++++. ++.|+.||..+|+
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTRE 151 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSSS
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCCC
Confidence 1111111111 33578888999999999999988877665443 2345678888888765 6779999999998
Q ss_pred EEEEEeeccccCCceEEEEEcCCC---CEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001358 567 IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
.+..+.... .....+.++. ..+++++.+|.++.||..+|+.+......
T Consensus 152 ~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 202 (369)
T 2hz6_A 152 LRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA 202 (369)
T ss_dssp CCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS
T ss_pred EEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 876655322 1122233332 56888999999999999999998877643
No 243
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.95 E-value=0.00049 Score=86.71 Aligned_cols=609 Identities=9% Similarity=0.034 Sum_probs=304.6
Q ss_pred eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC----CCCEEEE
Q 001358 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP----DGSLLGV 413 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp----dg~~las 413 (1092)
+++++-.+| ++..|+..|.=.+|.+.....-....+.+-| --..-++|..++... +...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCeEEE
Confidence 566666666 5777788777777777643210000000000 111346777777643 1235555
Q ss_pred Ee---CCCEEEEEEccCCCCccceEEecccccceeEEEeeC---CCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358 414 AY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 414 ~~---~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
++ .+|.+++..-.-+-.......+.+ ...++.+.... ... +|+.+..+.+ .|+.+. ++.+..+.. .
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~-~-- 467 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETEL-M-- 467 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECC-T--
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCccccccc-c--
Confidence 43 457788775432211111112332 23456555432 233 5665555555 455432 223333211 1
Q ss_pred eEEEeecccCCccEEEEEec---------CCeEEEEEcCCCCceEEecCCC-CceEEEEEecCCCEEEEEecCCCCceeE
Q 001358 488 VYSLCPHAKENIHFIFSISV---------DGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
.| ..+...|+++.. ...|++.+.........+..+. ..|...+.+ +.+++.+. .+.+
T Consensus 468 ----gf--~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-----g~~l 534 (1158)
T 3ei3_A 468 ----GF--VDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-----GRAL 534 (1158)
T ss_dssp ----TC--CSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-----TTEE
T ss_pred ----cc--cCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-----CCEE
Confidence 11 112223333321 2235566655444454555443 356555544 34555553 1236
Q ss_pred EEEeCCCCeEEEEEeeccccCCceEEEEEcCC------CCEEEEEeC-CCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA------KDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
..+++..+++... .... -...|.|+++.|. +.++++|.. |++++|+++.+.+.+........ ....++.+
T Consensus 535 ~~fel~~~~L~~~-~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l 611 (1158)
T 3ei3_A 535 YYLQIHPQELRQI-SHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILM 611 (1158)
T ss_dssp EEEEEETTEEEEE-EEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEE
T ss_pred EEEEeeCCceeee-cccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEE
Confidence 6677666654332 2111 1367999998864 368888886 99999999998777765554321 12334433
Q ss_pred c--cCCCEEEEEeCCCeEEEEECC--CCCeeeec--ccccccceeeeecC----------CcccccccccCC--------
Q 001358 631 N--KNGTLLAVIANENRIKILETP--ESNSVDAA--GVLSDNLRKLSVNP----------ISTVTGAGIANG-------- 686 (1092)
Q Consensus 631 s--~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~--~~~~~~v~~~~~~~----------~~~~~~~~~~~~-------- 686 (1092)
. ....+|.+|-.||.+.-+.+. ++...... .-...++.-..+.. ..+.+.... .+
T Consensus 612 ~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~-~~~l~~s~l~ 690 (1158)
T 3ei3_A 612 TTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSS-NHKLVFSNVN 690 (1158)
T ss_dssp EEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEES-SSSEEEEEBS
T ss_pred EEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEc-CCceEEeccC
Confidence 3 234678899999998666544 33222110 00011111111110 111110000 11
Q ss_pred ------ceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEE
Q 001358 687 ------SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 760 (1092)
Q Consensus 687 ------~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~l 760 (1092)
...|+....|+| ++ +..++.+++..++.........+. -...+..++++|+.+.++.+..+...
T Consensus 691 ~~~v~~~~~F~se~~~~g--~v-~~~~~~LrI~~i~~~~~~~~~~ip-----L~~Tprri~y~~~~~~~~v~~~~~~~-- 760 (1158)
T 3ei3_A 691 LKEVNYMCPLNSDGYPDS--LA-LANNSTLTIGTIDEIQKLHIRTVP-----LYESPRKICYQEVSQCFGVLSSRIEV-- 760 (1158)
T ss_dssp SSCCCEEEEECCSSSTTE--EE-EECSSCEEEEEECCSSSEEEEEEE-----CSSEEEEEEEEGGGTEEEEEEEEEEE--
T ss_pred hHHhceEeccCcccCCCc--EE-EEcCCceEEEEecccCCeeEEEEe-----CCCCceEEEEcCCCCEEEEEEEeccc--
Confidence 112222212222 22 223355777776532221112111 23577899999998877666543211
Q ss_pred eeecCC-----------------------------ccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE--
Q 001358 761 WRWPRN-----------------------------DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA-- 809 (1092)
Q Consensus 761 w~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-- 809 (1092)
++.... ....-+.......+++.|+.+...+...++.. ...+.+++
T Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~---nE~~~sv~~v 837 (1158)
T 3ei3_A 761 QDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ---NEYALSLVSC 837 (1158)
T ss_dssp ECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT---TEEEEEEEEE
T ss_pred cccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC---CcceEEEEEE
Confidence 111000 00000111223457788888888777777653 34444444
Q ss_pred -EecC-CCEEEEEe-----------CCeEEEEEcCCceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001358 810 -LSKN-DAYLFSAS-----------GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 810 -~s~d-g~~l~~~s-----------dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 875 (1092)
|..+ ..++++|. .|.|.+|++..++...... ...+.+++++-- +|++|| |- ..+|++|++..
T Consensus 838 ~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla-~i-g~~l~vy~l~~ 913 (1158)
T 3ei3_A 838 KLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLA-SI-NSTVRLYEWTT 913 (1158)
T ss_dssp CCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEE-EE-TTEEEEEEECT
T ss_pred EEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEE-Ec-CCEEEEEECCC
Confidence 4333 46888774 2569999987544322211 235678887754 454444 43 47899999986
Q ss_pred ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe
Q 001358 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 955 (1092)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~ 955 (1092)
.+.+..-..+-..|..+.....+++++.|..-..|.+...+..+... ..+..-.. . .+++++.|-.++.++++-.
T Consensus 914 ~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L-~~~a~D~~-~---~~vta~~~ld~~t~l~aD~ 988 (1158)
T 3ei3_A 914 EKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNF-EEIARDFN-P---NWMSAVEILDDDNFLGAEN 988 (1158)
T ss_dssp TSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEE-EEEEECCS-C---BCEEEEEEEETTEEEEEET
T ss_pred CceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeE-EEEEeecc-c---ccEEEEEEEccCcEEEEcC
Confidence 65433111122223333333357899999888888887665432111 12221111 1 3689999988876666557
Q ss_pred CCcEEEEEcCCc-------eeeeeeccCC-CcCEEEEEE---ecC---------CCEEEEEeCCCcEEEEEC
Q 001358 956 ETHLAIYEAEEL-------TCLKQWFPIS-SVPISQATF---SCD---------CRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 956 d~~v~lwd~~~~-------~~~~~~~~~h-~~~v~~l~f---s~d---------g~~l~t~s~Dg~i~vwd~ 1007 (1092)
++.+.++..... +.+.....-| ...|+++.- .+. ...++.++.+|+|.+.-.
T Consensus 989 ~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 989 AFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp TSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred CCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence 788888876531 2222111112 556777652 222 234677888898887643
No 244
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.91 E-value=4.7e-10 Score=124.57 Aligned_cols=190 Identities=9% Similarity=0.056 Sum_probs=109.0
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC
Q 001358 855 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 934 (1092)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 934 (1092)
++..|++++.||.|+.||..+|+.+.++.. +.+.+..+.+++..+++++.||.|+.||..+++..............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~- 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ- 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence 456889999999999999999999988876 55666666778888888889999999999887643211111100000
Q ss_pred CCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001358 935 LAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1092)
Q Consensus 935 ~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~ 1013 (1092)
.+..++.++ .+++ +.++.++.||..+|+.+..+.. +. ...++|++..|++++.|+.|+.||..+|+.+
T Consensus 85 -----~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 85 -----ASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp -----TCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred -----cCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 011112344 4444 6789999999999998766432 22 2456778889999999999999999999987
Q ss_pred EeeccccccCCCCccCcccceEEEECCC--CCCEEEEEeCCCcEEEEecCCCCCccccC
Q 001358 1014 CRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1070 (1092)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~--~~~~l~~~~~dg~v~~w~~~~~~~~~~~~ 1070 (1092)
.++....+.. .+++++ ....+++++.||.|+.||....+..|...
T Consensus 154 W~~~~~~~~~------------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 154 WNATYFDYAA------------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CEEEEEEECC------------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EeEecccccC------------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 7765322111 111210 01567888999999999998888888764
No 245
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.89 E-value=0.00041 Score=81.78 Aligned_cols=535 Identities=9% Similarity=-0.005 Sum_probs=276.3
Q ss_pred eEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE-eCCCEEEEEEcc
Q 001358 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYH 426 (1092)
Q Consensus 348 ~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~ 426 (1092)
+|+.+ ....|+..++++........ + ..-..+..++|.+++..|..+ ..++.|..+++.
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVAIP-----------------L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEECC-----------------C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceEEE-----------------c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 34444 34678999988765332111 1 123468899999977666655 456889999987
Q ss_pred CCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEE-
Q 001358 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI- 505 (1092)
Q Consensus 427 ~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~- 505 (1092)
+... .. .+.........+++.+.+.. ++++-...+.|.+.+++.......+...-.....+++.|. +|.++++-
T Consensus 68 g~~~-~~--v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~ 142 (628)
T 4a0p_A 68 GSAL-EH--VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW 142 (628)
T ss_dssp SCSC-EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCc-EE--EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence 6432 21 22222245678999877664 4556666788999997655432223233445678888654 33444443
Q ss_pred ecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001358 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1092)
Q Consensus 506 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 585 (1092)
+..+.|...+++......... .......+++++++..|+.+-. +.+.|...|+..... ..+.... .....++
T Consensus 143 g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l---~~P~gla 214 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDL---PHPFGLT 214 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECC---SCEEEEE
T ss_pred CCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccC---CCceEEE
Confidence 235678888877655444433 4456789999999888887753 356799999876544 3343322 3456777
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceE-EEccCCCEEEEEeCCCeEEEEECCCCCeeeeccccc
Q 001358 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS 664 (1092)
Q Consensus 586 ~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 664 (1092)
+.. +..+++-...+.|...|..+++....+..... ....+ .+++..+. + . ..+ ....
T Consensus 215 v~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~-~-----------n~C----~~~n 272 (628)
T 4a0p_A 215 QYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G-W-----------NEC----ASSN 272 (628)
T ss_dssp EET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C-C-----------CTT----TTTG
T ss_pred EEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c-c-----------eEe----ccCC
Confidence 764 33334444678899999888776666543211 12233 22221110 0 0 000 0000
Q ss_pred ccceeeeec-CCcccccccccCCceeecCCC-CCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEE
Q 001358 665 DNLRKLSVN-PISTVTGAGIANGSVSVNEDP-KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 742 (1092)
Q Consensus 665 ~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~-s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 742 (1092)
.....+.+. |.+.....++......-++.. .+....++.+. ...|+-..++.... ....++. .....+.+++|
T Consensus 273 g~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~---~~~~l~~-~~~~~~~~ld~ 347 (628)
T 4a0p_A 273 GHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQS---PDIILPI-HSLRNVRAIDY 347 (628)
T ss_dssp GGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCC---CCEECCC-TTCSCEEEEEE
T ss_pred CCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeec-cceEEEEecccccC---ceEEEEe-hhcCCceEEEE
Confidence 000001110 000000000000000000000 01112222222 23343333321110 0111111 12345778999
Q ss_pred ecCCcEEEEeec-CCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe
Q 001358 743 NNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 821 (1092)
Q Consensus 743 s~~g~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s 821 (1092)
.+....|+.+.. .+.|..++...... .. +.............+..+++...++.|..+.
T Consensus 348 d~~~~~iy~sD~~~~~I~r~~~~g~~~-----------~~---------v~~~~~~~~~~~~~p~glAvD~~~~nLY~td 407 (628)
T 4a0p_A 348 DPLDKQLYWIDSRQNMIRKAQEDGSQG-----------FT---------VVVSSVPSQNLEIQPYDLSIDIYSRYIYWTC 407 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSC-----------EE---------EEC--------CCCEEEEEEETTTTEEEEEE
T ss_pred ecCCCeEEEEecCcceEEEEEcCCCCc-----------eE---------EEEcccccccccCCcceEEeeccCCeEEEEc
Confidence 887666655543 45665554322100 00 0000000000234578999999877776665
Q ss_pred --CCeEEEEEcCCceeeEEe-cCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCceeeEeeccccCCeEEEEEcC
Q 001358 822 --GGVISLYIVMTFKTILTI-MPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKLEGHSKRVTGLVFSD 896 (1092)
Q Consensus 822 --dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp 896 (1092)
.+.|.+.++. |+....+ ........++++.|..+.++.+-.... .|...+++...........-.....|++.+
T Consensus 408 ~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~ 486 (628)
T 4a0p_A 408 EATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDS 486 (628)
T ss_dssp TTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEET
T ss_pred CCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeC
Confidence 4789999986 4444343 334467899999995555555543333 566666663332222232344578999999
Q ss_pred CCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeee
Q 001358 897 ALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ 972 (1092)
Q Consensus 897 dg~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~ 972 (1092)
+++.|..+. ..+.|...+++..... .+.. ... ....++++.. +.+..+ ...+.|...|..+|+....
T Consensus 487 ~~~~LYw~D~~~~~I~~~~~dG~~r~---~~~~--~~~---~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~ 555 (628)
T 4a0p_A 487 RLGKLFWADSDLRRIESSDLSGANRI---VLED--SNI---LQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTK 555 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCE---EEEC--SSC---SCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEE
T ss_pred CCCEEEEEeCCCCEEEEEeCCCCceE---EEEc--CCC---CCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEE
Confidence 876666554 4578999998764321 2211 111 1345676654 333333 2445677777666654433
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.86 E-value=6e-06 Score=86.90 Aligned_cols=224 Identities=12% Similarity=0.043 Sum_probs=143.9
Q ss_pred CcEEEEEECCCCCEEEEEe-CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC
Q 001358 397 VSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
..+..++|++++..|..+. ..+.|..++..++.... .+.........+++.+++.. ++++....+.|.+++++..
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 4578899999777666654 56789999998754221 22222246789999998664 4556666789999997654
Q ss_pred ceeEEEecCCcceEEEeecccCCccEEEEEec--CCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCC
Q 001358 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
...............+++.+. ++.++++... .+.|..++++.................+++++++..|+.+.. +
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~-~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~ 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred CEEEEEECCCCCccEEEEeeC-CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence 322222222245677888543 2334444333 468888888754433333233346788999999888877653 2
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
.+.|..+|.........+.+. .....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.|
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~----~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~ 260 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGL----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIAL 260 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECC----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEEC
T ss_pred CCEEEEEecCCCceEEEecCC----CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecC
Confidence 567999998765544443321 234566654 45565554 56899999999999988886432 12357888888
Q ss_pred CCC
Q 001358 633 NGT 635 (1092)
Q Consensus 633 ~~~ 635 (1092)
++.
T Consensus 261 ~~~ 263 (267)
T 1npe_A 261 SQC 263 (267)
T ss_dssp SCC
T ss_pred ccC
Confidence 764
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.86 E-value=1.2e-06 Score=105.03 Aligned_cols=375 Identities=13% Similarity=0.134 Sum_probs=206.1
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcce-----------EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001358 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----------~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 525 (1092)
.++.++.++.|..+|..+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 46667778999999999999998875432211 11122 2357888899999999999999988766
Q ss_pred cCCC----CceEEEEEecCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeeccc--c--------------------
Q 001358 526 DAPG----LGCTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL--Q-------------------- 577 (1092)
Q Consensus 526 ~~~~----~~i~~~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~--~-------------------- 577 (1092)
.... ..+.+.-.-.++ .++++.... ..++.|+.+|..+|+.+-.+..... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~ 222 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY 222 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred ccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence 5421 111110011144 444443221 1257899999999999887753210 0
Q ss_pred ------CCceEEEEEcCCCCEEEEEeCCCe-------------------EEEEECCCCceEEEEeCCCCC-------CCC
Q 001358 578 ------HNSVSVVHFDTAKDQILAAGDDHV-------------------IKIWDMNKVQLLTTIDAGGGL-------PEN 625 (1092)
Q Consensus 578 ------~~~v~~~~~~~~~~~l~~~s~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~v 625 (1092)
......+++.|+...++.++.++. |..+|..+|+.+.......+. ...
T Consensus 223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~ 302 (668)
T 1kv9_A 223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI 302 (668)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc
Confidence 011124678888889988887763 999999999999888753221 111
Q ss_pred ceEEEccCCC---EEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccce
Q 001358 626 PRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1092)
Q Consensus 626 ~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 702 (1092)
....+..+|+ .+++++.+|.++++|..+++.+......... +...+.+ ..+..........+++.
T Consensus 303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~d~---------~~g~p~~~~~~~~~~~~-- 370 (668)
T 1kv9_A 303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT-WAEKVDL---------ATGRPVEAPGVRYEKEP-- 370 (668)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC-SEEEECT---------TTCCEEECTTTTCSSSC--
T ss_pred EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccc-ccccccc---------ccCCccccccccccCCe--
Confidence 1122234665 6888999999999999999887654322210 0001110 00000000000000000
Q ss_pred eeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCcc
Q 001358 703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 782 (1092)
Q Consensus 703 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~ 782 (1092)
.+..|.......-..++++|+...++....+-...+... . ..
T Consensus 371 ----------------------~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~-~---------------~~ 412 (668)
T 1kv9_A 371 ----------------------IVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNE-G---------------KD 412 (668)
T ss_dssp ----------------------EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCC-G---------------GG
T ss_pred ----------------------eEECCCCccccCCCcceECCCCCEEEEeccccceEeeee-c---------------cc
Confidence 000111000111123578888776666555422221110 0 00
Q ss_pred ccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE-EEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001358 783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860 (1092)
Q Consensus 783 ~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~-~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la 860 (1092)
|....+. . .... + .+..++ ... +|.|..||..+++.+.+...+.. .....+.. .+.+++
T Consensus 413 ~~~~~~~--~--------~g~~-----~--~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t-~gg~vf 473 (668)
T 1kv9_A 413 FVTRKAF--N--------TAAG-----F--ADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVF 473 (668)
T ss_dssp CCCCSSC--C--------CSSC-----G--GGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEE
T ss_pred ccccccc--c--------cCcc-----c--cccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-CcCceeEe-CCCEEE
Confidence 1100000 0 0000 0 011111 122 47899999999998877654332 22223333 466888
Q ss_pred EEeCCCeEEEEEcCCceeeEeeccccCCe-EEEEEcCCCC-EEEEEe
Q 001358 861 IGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSSG 905 (1092)
Q Consensus 861 sg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~-~l~s~s 905 (1092)
+|+.||.++.||..+|+.+..+....+.. .-+.+..+|+ +++.++
T Consensus 474 ~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 474 QGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 89999999999999999998887543211 1234445676 444443
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.86 E-value=1e-07 Score=107.77 Aligned_cols=235 Identities=9% Similarity=0.016 Sum_probs=159.3
Q ss_pred cCCCEEEEEe--CCeEEEEEcCCceeeEEecCC-CCCeEEEEE-c-CCCCCEEEEEe------------------CCCeE
Q 001358 812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAF-N-PHDNNVIAIGM------------------DDSTI 868 (1092)
Q Consensus 812 ~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~d~~~lasg~------------------~dg~v 868 (1092)
+||+++.+.. +++|.+.|+.+.++...+.-. ......+++ + | ++.++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 4899998876 477999999999988855433 246788888 5 8 888888884 34589
Q ss_pred EEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC--------------------------------------cE
Q 001358 869 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA--------------------------------------QI 910 (1092)
Q Consensus 869 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--------------------------------------~i 910 (1092)
.++|.++.+.+.++.--. ....++++|||+++++.+.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999999888876322 356788999999999988653 35
Q ss_pred EEEEcCC--CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCCcEEEEEcCCce------------eeeeec
Q 001358 911 FVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT------------CLKQWF 974 (1092)
Q Consensus 911 ~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~v~lwd~~~~~------------~~~~~~ 974 (1092)
.|.|..+ ++.. ...+.... ...++.++|||++++++ .+++|.++|+.+.+ ......
T Consensus 257 ~VID~~~~~~~~~-~~~Ipvg~-------~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 257 KVVDGRKEASSLF-TRYIPIAN-------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp EEEECSGGGCCSS-EEEEEEES-------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred EEEeCcccCCcee-EEEEecCC-------CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 5666655 2110 11222211 35679999999999885 56789999999663 222222
Q ss_pred cCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCC----------CceEEeeccccccCCCCccCcccceEEEECCCCCC
Q 001358 975 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1044 (1092)
Q Consensus 975 ~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~ 1044 (1092)
-......++|++||...++..-|+.|.+||+.+ ...+.++... +.|.+ .-.++..+.+| |++
T Consensus 329 --vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqpGh----~~~~~g~t~~~-DGk 400 (595)
T 1fwx_A 329 --LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQPGH----LKTVMGETLDA-TND 400 (595)
T ss_dssp --CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCEEE----EEETTTTSTTC-CSS
T ss_pred --CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-ccccc----ceeccceEeCC-CCC
Confidence 246788999999995555677899999999987 4455555421 11111 11123344677 578
Q ss_pred EEEEEeCCC--cE-----------EEEecCCCC
Q 001358 1045 QFAVGLTNG--EV-----------YVIEPNEPG 1064 (1092)
Q Consensus 1045 ~l~~~~~dg--~v-----------~~w~~~~~~ 1064 (1092)
+|+++..-. ++ .++|++..+
T Consensus 401 ~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 401 WLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred EEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 887776532 23 788884333
No 249
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.84 E-value=9.4e-06 Score=85.38 Aligned_cols=257 Identities=11% Similarity=0.011 Sum_probs=156.1
Q ss_pred CCEEEEEeCCCEEEEEEccCCCCcc--ceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001358 408 GSLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~--~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
|.+|..+.. +.|+.+++.+..... ....+......+..++|++++.. ++++....+.|.+++...+.....+....
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 78 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL 78 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence 345655543 468889987654211 01112222345789999997764 55566667899999987665433333333
Q ss_pred cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.....+++.+. ++.++++....+.|.+++++.................++++|++..|+.+.... ..+.|+.++....
T Consensus 79 ~~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~ 156 (267)
T 1npe_A 79 GSPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT 156 (267)
T ss_dssp CCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC
T ss_pred CCccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCC
Confidence 45678888543 334556666678999999876544333333334678999999877766654321 1356888887543
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
. ...+.... ......+++++++..|+.+. ..+.|.++|.........+... .....++.. ++.++++...++
T Consensus 157 ~-~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d-~~~lyva~~~~~ 229 (267)
T 1npe_A 157 N-RRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY-GKNLYYTDWKTN 229 (267)
T ss_dssp C-CEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE-TTEEEEEETTTT
T ss_pred C-cEEEEECC--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe-CCEEEEEECCCC
Confidence 2 23332111 24678899999887776654 5689999999765544444321 123456654 344444444568
Q ss_pred eEEEEECCCCCeeeeccccc-ccceeeeecCC
Q 001358 645 RIKILETPESNSVDAAGVLS-DNLRKLSVNPI 675 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~ 675 (1092)
.|..++..+++.+..+.... .....+++.|.
T Consensus 230 ~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred eEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 99999999887776665332 23445555544
No 250
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.84 E-value=0.0012 Score=83.27 Aligned_cols=572 Identities=10% Similarity=0.091 Sum_probs=280.6
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCC-----ccceEEecccccceeEEEeeCCC---CcEEEEEEe---CCCcE
Q 001358 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPC---KQISVITCG---DDKTI 467 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~l~~h~~~v~~~~~s~d~---~~l~l~s~~---~d~~i 467 (1092)
..++++-.+| +|..|+..|.=.+|.+..... +....++ ..-++|.+++..... .. .+++++ .+|.+
T Consensus 329 ~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gsL 405 (1158)
T 3ei3_A 329 AECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGSL 405 (1158)
T ss_dssp CSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCEE
T ss_pred ccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCeE
Confidence 3567776555 788888877767777664321 1222233 244688888875421 21 244332 56788
Q ss_pred EEEECCCC-ceeEEEec-CCcceEEEeecc-cCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CceEEEEEec-CC
Q 001358 468 KVWDAVTG-SRTYSFEG-HGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSA-NG 541 (1092)
Q Consensus 468 ~vwd~~~~-~~~~~~~~-~~~~v~~i~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~~~~s~-dg 541 (1092)
++..-.-+ +.+..+.- .-..++.+.... +....+|+.+..+.+ +++.+.. +........+ .....++... .+
T Consensus 406 ~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~-e~veev~~~gf~~~~~TL~~~~l~~ 483 (1158)
T 3ei3_A 406 RIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNG-EEVEETELMGFVDDQQTFFCGNVAH 483 (1158)
T ss_dssp EEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEET-TEEEEECCTTCCSSSCEEEEEEETT
T ss_pred EEEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeC-CcccccccccccCCCCcEEEEEcCC
Confidence 88742211 11122210 112344443211 123457777766666 4554422 1222221111 1111111111 12
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE--EEeCC
Q 001358 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG 619 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~ 619 (1092)
..++=... ..|++.+...+..+..+.... ...|...+.+. .+++.++ ++.+.++.+..+++.. .....
T Consensus 484 ~~ivQVt~-----~~Irli~~~~~~~~~~w~~p~--~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~ 553 (1158)
T 3ei3_A 484 QQLIQITS-----ASVRLVSQEPKALVSEWKEPQ--AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEME 553 (1158)
T ss_dssp TEEEEEES-----SCEEEEESSSCCEEEEECCTT--CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECS
T ss_pred CeEEEEec-----CEEEEEECCCCeEEEEEECCC--CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCC
Confidence 24443332 227777766555555554433 24566666553 4666665 6788888877654332 22222
Q ss_pred CCCCCCceEEEccC------CCEEEEEeC-CCeEEEEECCCCCeeeeccccc-ccceeeeecCCcccccccccCCceeec
Q 001358 620 GGLPENPRICFNKN------GTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVN 691 (1092)
Q Consensus 620 ~~~~~v~~v~~s~~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1092)
..|.|+++.|. +.++++|.. |++++|+++++.+.+....-.. ....++.+. .+
T Consensus 554 ---~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~---------------~~- 614 (1158)
T 3ei3_A 554 ---HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMT---------------TF- 614 (1158)
T ss_dssp ---SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEE---------------EE-
T ss_pred ---CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEE---------------Ee-
Confidence 35888888763 479999996 9999999998755443221111 111112111 11
Q ss_pred CCCCCCcccceeeccccccceeceeecc--CccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccc
Q 001358 692 EDPKEDVKPEISVEAENKSEVEKPLFAR--PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT 769 (1092)
Q Consensus 692 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~ 769 (1092)
....++..|-.||.+..+.++... ........+ ...++.-..+...|..-+.+.++.-..+|.-+
T Consensus 615 ----~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L----G~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~----- 681 (1158)
T 3ei3_A 615 ----ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL----GTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN----- 681 (1158)
T ss_dssp ----TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC----CSSCCEEEEEESSSCEEEEEESSSCEEEEESS-----
T ss_pred ----CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc----CCCceEEEEEeeCCceeEEEECCCCEEEEEcC-----
Confidence 123455666666665544433211 111111111 11233333333333322222223222222211
Q ss_pred cCcccccccCCccccCCCCCceeeecCCCCCCCCCee-EEEEecC--CCEEEEEeCCeEEEEEcCCce--eeEEecCCCC
Q 001358 770 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP-CFALSKN--DAYLFSASGGVISLYIVMTFK--TILTIMPPSP 844 (1092)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~-~~~~s~d--g~~l~~~sdg~i~iwd~~~~~--~~~~~~~~~~ 844 (1092)
+. +....+ ....+. ...|+.. ..-++..+++.++|..+.+.. .++++. -..
T Consensus 682 ------------------~~-l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~ 737 (1158)
T 3ei3_A 682 ------------------HK-LVFSNV----NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP-LYE 737 (1158)
T ss_dssp ------------------SS-EEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE-CSS
T ss_pred ------------------Cc-eEEecc----ChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEe-CCC
Confidence 00 111111 111222 2234332 234555556668887775432 222222 234
Q ss_pred CeEEEEEcCCCCCEEEEEeCC-------------------------------------------------CeEEEEEcCC
Q 001358 845 TATSLAFNPHDNNVIAIGMDD-------------------------------------------------STILIYNARS 875 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~d-------------------------------------------------g~v~iwd~~~ 875 (1092)
.+..++++| ..+.++++..+ +.|++.|..+
T Consensus 738 Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t 816 (1158)
T 3ei3_A 738 SPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHT 816 (1158)
T ss_dssp EEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTT
T ss_pred CceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCC
Confidence 677788887 55544433211 2467777777
Q ss_pred ceeeEeecc-ccCCeEEEE---EcCC-CCEEEEEe----------CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001358 876 SEVISKLEG-HSKRVTGLV---FSDA-LNILVSSG----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 940 (1092)
Q Consensus 876 ~~~~~~l~~-h~~~V~~l~---~spd-g~~l~s~s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1092)
.+.+..++- ....+.+++ |..+ ..+++.|. ..|.|.++++..++.. .+...+- .+.+.
T Consensus 817 ~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~---lv~~~~v----~g~v~ 889 (1158)
T 3ei3_A 817 FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ---TVAEKEV----KGAVY 889 (1158)
T ss_dssp CCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE---EEEEEEE----SSCEE
T ss_pred CeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEE---EEEEEEc----CCcCE
Confidence 766655432 222344444 4333 46888775 3478999999854322 2221111 13566
Q ss_pred EEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC--CCceEEeecc
Q 001358 941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS--NLEVQCRILS 1018 (1092)
Q Consensus 941 ~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~--~~~~~~~~~~ 1018 (1092)
+++-- +| +|+++-..+|++|++...+.++. ...+-..|..+.....|.+++.|..-.+|.+.... .+++.-..
T Consensus 890 al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~-~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a-- 964 (1158)
T 3ei3_A 890 SMVEF-NG-KLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA-- 964 (1158)
T ss_dssp EEEEE-TT-EEEEEETTEEEEEEECTTSCEEE-EEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE--
T ss_pred EEeee-CC-EEEEEcCCEEEEEECCCCceEEE-EeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE--
Confidence 76533 23 67777789999999986654431 11111123333333457788888877777765543 33332111
Q ss_pred ccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001358 1019 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 1019 ~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
..+. +.+..++.+- |...++.+..+|.+.+...+..
T Consensus 965 ~D~~-------~~~vta~~~l--d~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 965 RDFN-------PNWMSAVEIL--DDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp ECCS-------CBCEEEEEEE--ETTEEEEEETTSEEEEEEECTT
T ss_pred eecc-------cccEEEEEEE--ccCcEEEEcCCCcEEEEecCCC
Confidence 1222 2334445543 2368999999999999998753
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.82 E-value=2.6e-06 Score=102.16 Aligned_cols=168 Identities=12% Similarity=0.156 Sum_probs=114.7
Q ss_pred EEEEcCCCCCEEEEEeCCCe-------------------EEEEEcCCceeeEeecc--cc-------CCeEEEEEcCCCC
Q 001358 848 SLAFNPHDNNVIAIGMDDST-------------------ILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN 899 (1092)
Q Consensus 848 ~l~~s~~d~~~lasg~~dg~-------------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spdg~ 899 (1092)
.++++| +..+++.++.++. |..+|..+|+.+..++. |. .+.....+..+|+
T Consensus 234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 478888 6778888887764 99999999999887764 32 2333333334675
Q ss_pred ---EEEEEeCCCcEEEEEcCCCceeeeeeeec---------CCCCc--------C------CC-----CCceEEEEecCC
Q 001358 900 ---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT---------PDGVM--------T------LA-----PSETHIQFHKDQ 948 (1092)
Q Consensus 900 ---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---------~~~~~--------~------~~-----~~v~~l~~s~dg 948 (1092)
.++.++.+|.+.++|..+++......... ..+.. . .. ..-..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 68889999999999999988652111100 00000 0 00 001237889988
Q ss_pred CEEEEE-------------------------------------eCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC
Q 001358 949 TRFLLV-------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR 991 (1092)
Q Consensus 949 ~~la~~-------------------------------------~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~ 991 (1092)
.++.+. .++.|.-||..+|+.+-.... ..++....+...|.
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg 470 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGN 470 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTT
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCC
Confidence 776651 126799999999998765432 23344445566788
Q ss_pred EEEEEeCCCcEEEEECCCCceEEeecc
Q 001358 992 MVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 992 ~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
++++++.||.++.||..+|+.+.++..
T Consensus 471 ~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 471 LVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCcccchhhhhhcChhheEecC
Confidence 999999999999999999999988874
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.80 E-value=5.7e-06 Score=96.64 Aligned_cols=167 Identities=14% Similarity=0.176 Sum_probs=106.9
Q ss_pred EEEEcCCCCCEEEEEeCC----------------CeEEEEEcCCceeeEeecc--cc--------CCeEEEEEc-CCC--
Q 001358 848 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DAL-- 898 (1092)
Q Consensus 848 ~l~~s~~d~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-pdg-- 898 (1092)
.+++.+ ...+++.+..+ +.|.-+|.++|+.+..++. |. .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 356667 55677777665 3899999999999877764 21 1222 2222 567
Q ss_pred -CEEEEEeCCCcEEEEEcCCCceeeeeeeec----------CCCCc----------CC-----------CCCceEEEEec
Q 001358 899 -NILVSSGGDAQIFVWDVDGWGIQTCRSLQT----------PDGVM----------TL-----------APSETHIQFHK 946 (1092)
Q Consensus 899 -~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~----------~~~~~----------~~-----------~~~v~~l~~s~ 946 (1092)
+.++.++.+|.+.+.|..+++..-...... ..+.. .. ...-..++++|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567788999999999999987654322110 00000 00 00113567888
Q ss_pred CCCEEEEE----------------------------------------eCCcEEEEEcCCceeeeeeccCCCcCEEEEEE
Q 001358 947 DQTRFLLV----------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATF 986 (1092)
Q Consensus 947 dg~~la~~----------------------------------------~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~f 986 (1092)
+..++.+. ..+.|.-||+.+++.+-+...+ .++..-.+
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~ 480 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM 480 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcce
Confidence 87766541 1256888888888877654322 22222223
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCceEEeecc
Q 001358 987 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 987 s~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
...|.+++.++.||.++.||..+|+.+.++..
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 44667888899999999999999999988863
No 253
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.75 E-value=1.3e-06 Score=89.57 Aligned_cols=200 Identities=12% Similarity=0.065 Sum_probs=138.5
Q ss_pred CeeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceee
Q 001358 804 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 879 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 879 (1092)
....++|++|+.++++.+ ++.|+++|+.+++.+..+.-.. .....+++. ++++.++...++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 457899999876555554 3789999999999988875322 233456665 3455566667899999999999999
Q ss_pred EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCc
Q 001358 880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 958 (1092)
Q Consensus 880 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~ 958 (1092)
.++..-... ...+++||+.|+.+..++.|.++|..+.+......+....... ..+..+.|. +|...+.. .++.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~---~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV---IRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc---ccceeEEEE-CCEEEEecCCCCe
Confidence 888632121 2446678888877777889999999886654432222211111 135678888 77555444 5689
Q ss_pred EEEEEcCCceeeeeeccCC------------CcCEEEEEEecCCCE-EEEEeCCCcEEEEECCCCc
Q 001358 959 LAIYEAEELTCLKQWFPIS------------SVPISQATFSCDCRM-VFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 959 v~lwd~~~~~~~~~~~~~h------------~~~v~~l~fs~dg~~-l~t~s~Dg~i~vwd~~~~~ 1011 (1092)
|.+.|..+++.+..+..+. ......++|+|+++. ++++...+.+.+-++....
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 9999999999887764320 135689999999865 4555577888888877653
No 254
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.74 E-value=0.0013 Score=77.58 Aligned_cols=502 Identities=9% Similarity=-0.046 Sum_probs=253.5
Q ss_pred CCCcEEEEEECCCCCEEEEEe-CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC
Q 001358 395 PGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~ 473 (1092)
.-..+..++|++.+..|..+. ..+.|..+++++..... ..+.........+++.+.+.. ++++-...+.|.+.+++
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~--~v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~d 114 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLD 114 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE--EEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE--EEEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECC
Confidence 345678999999777776664 46789999987653211 122222346789999997664 55566677899999976
Q ss_pred CCceeEEEecCCcceEEEeecccCCccEEEEE-ecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCC
Q 001358 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
.......+...-.....+++.+. ++.++++- +..+.|...+++.................+++++++..|+.+-.
T Consensus 115 G~~~~~l~~~~l~~P~~Iavdp~-~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~--- 190 (619)
T 3s94_A 115 GSLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA--- 190 (619)
T ss_dssp SCSCEEEECSSCSCCCCEEEETT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---
T ss_pred CCCEEEEEeCCCCCCceEEEecC-CCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---
Confidence 54433333234445667787554 23344443 22456777777655444444444556789999998888887743
Q ss_pred CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
....|...|...........+.. .....+++..+ .++.+ ...+.|...|..+++....+.... .....+++.
T Consensus 191 ~~~~I~~~~~dG~~~~~~~~~~~---~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~ 263 (619)
T 3s94_A 191 KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDI--FSPMDIHAF 263 (619)
T ss_dssp TTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCC--CCCSEEEEC
T ss_pred CCCeEEEecCCCCccEEEEeCCC---CCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCC--CCCcEEEEE
Confidence 25679999987654433333222 22345666654 44444 467788899988887665554321 112333332
Q ss_pred -cCCCEEEEEeCCCeEEEEECCCCC--eeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccc
Q 001358 632 -KNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1092)
Q Consensus 632 -~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 708 (1092)
|..+-- +..... ..++. .+.........-. ..+|.+-.+...... .. .....+++.+ ..+
T Consensus 264 ~~~~qp~--~~n~C~-----~~ng~Cs~lCl~~~~~~~~~--C~C~~g~~l~~d~~~---C~----~~~~~~Ll~~-~~~ 326 (619)
T 3s94_A 264 SQQRQPN--ATNPCG-----IDNGGCSHLCLMSPVKPFYQ--CACPTGVKLLENGKT---CK----DGATELLLLA-RRT 326 (619)
T ss_dssp CGGGSCC--CCCTTT-----TTGGGCSSEEEECSSTTSEE--EECCTTCCBCTTSSC---BC----SSCSEEEEEE-ESS
T ss_pred ccccCCC--cccccc-----CCCCcccceEECCCCCCCce--EeCCchheecccCcc---cC----CCCceEEEEE-ccc
Confidence 211000 000000 00000 0000000000000 111111111000000 00 0011223322 234
Q ss_pred ccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEee-cCCeeEEeeecCCccccCcccccccCCccccCCC
Q 001358 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 787 (1092)
Q Consensus 709 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1092)
.|+..+++..... .+.++. .....+.+++|.+.+..|+.+. ..+.|..++.....
T Consensus 327 ~i~~i~l~~~~~~---~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~-------------------- 382 (619)
T 3s94_A 327 DLRRISLDTPDFT---DIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG-------------------- 382 (619)
T ss_dssp CEEEEESSSTTCC---CEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--------------------
T ss_pred ceEEEecCCCccc---eeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc--------------------
Confidence 5555554432211 111121 1234567899998655555444 45666665543210
Q ss_pred CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeC-
Q 001358 788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD- 864 (1092)
Q Consensus 788 ~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~- 864 (1092)
. ..... ..-.....+++...+..|..+. .+.|.+.++........+...-.....+++.|..|.+..+-..
T Consensus 383 -~-~~v~~----~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~ 456 (619)
T 3s94_A 383 -S-QFVVT----AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGE 456 (619)
T ss_dssp -C-EEEEC----SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSS
T ss_pred -c-EEEEE----CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCC
Confidence 0 00000 0223456899987666666665 4789999987543322233344678999999944544444322
Q ss_pred CCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEE
Q 001358 865 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943 (1092)
Q Consensus 865 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1092)
.+.|...+++...........-.....|++.++++.|..+. ..+.|...+++...... .+..... ...+++
T Consensus 457 ~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~~~~l~------~P~gla 528 (619)
T 3s94_A 457 IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV--LVEDKIP------HIFGFT 528 (619)
T ss_dssp SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EEECCCC------SSCCEE
T ss_pred CCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEE--EeccCCC------CcEEEE
Confidence 35777777664332222233345678999998766666554 45678888887643221 2221111 133555
Q ss_pred EecCCCEEEEE--eCCcEEEEEcCCc
Q 001358 944 FHKDQTRFLLV--HETHLAIYEAEEL 967 (1092)
Q Consensus 944 ~s~dg~~la~~--~d~~v~lwd~~~~ 967 (1092)
+..+ .|..+ ..+.|...|..++
T Consensus 529 v~~~--~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 529 LLGD--YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EETT--EEEEECTTSSCEEEEESSSC
T ss_pred EECC--EEEEeecCCCeEEEEEcCCC
Confidence 5433 44443 3445666666555
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.70 E-value=2.7e-05 Score=91.19 Aligned_cols=378 Identities=11% Similarity=-0.007 Sum_probs=203.6
Q ss_pred EEEEEeC-CCcEEEEEC-CCCceeEEEecCCcc-e----------EEEeecccCCccEEEEEecCCeEEEEEcCCCCceE
Q 001358 457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-V----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 523 (1092)
Q Consensus 457 ~l~s~~~-d~~i~vwd~-~~~~~~~~~~~~~~~-v----------~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 523 (1092)
.++.++. ++.|..+|. .+|+.+.++...... + ..+++ ++..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3566666 889999999 899998877533210 0 11122 23578888899999999999998887
Q ss_pred EecCCCC----ceEE-EEEecCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeecccc-------------------
Q 001358 524 DYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ------------------- 577 (1092)
Q Consensus 524 ~~~~~~~----~i~~-~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~------------------- 577 (1092)
....... .+.+ ... .++ .++++.... ..++.|+.+|..+|+.+-.+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6554321 1111 111 244 444443211 11567999999999998776643200
Q ss_pred ---------------CC-ceEEEEEcCCCCEEEEEeCC----------------CeEEEEECCCCceEEEEeCCCCC---
Q 001358 578 ---------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGL--- 622 (1092)
Q Consensus 578 ---------------~~-~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 622 (1092)
.. ....+++.++...++.++.+ +.|..+|..+|+.+...+...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00 00235667777777776642 35999999999999888654221
Q ss_pred ----CCCceEEEccCCC---EEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCC
Q 001358 623 ----PENPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1092)
Q Consensus 623 ----~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (1092)
.....+....+|+ .++.++.+|.+.++|..+++.+.........-....+.+
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~--------------------- 356 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL--------------------- 356 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT---------------------
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc---------------------
Confidence 1111122224674 677888899999999999987765432110000000000
Q ss_pred CCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccc
Q 001358 696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 775 (1092)
Q Consensus 696 ~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~ 775 (1092)
..++.+...... . .+.....+..|.......-..++++|+...+++...+....++..+..
T Consensus 357 ~~g~p~~~~~~~---------~-~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~--------- 417 (571)
T 2ad6_A 357 KTGTPVRDPEFA---------T-RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP--------- 417 (571)
T ss_dssp TTCSEEECGGGC---------C-CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC---------
T ss_pred cCCceecccccC---------C-CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc---------
Confidence 000000000000 0 000000001111001111134678998888888877644444332110
Q ss_pred cccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCC
Q 001358 776 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD 855 (1092)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d 855 (1092)
...+.. .-.....+..+|.+. ....++.+..||..+++.+.++.... .+....+.. .
T Consensus 418 ---------~~~g~~----------~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~ 474 (571)
T 2ad6_A 418 ---------YRAGQF----------FVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-K 474 (571)
T ss_dssp ---------CCTTSC----------CCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-T
T ss_pred ---------cccCCc----------cccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE-C
Confidence 000100 000011122233321 00124789999999998877765322 222222232 3
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeeEeeccccCC-eEEEEEcCCCCEEEE
Q 001358 856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 903 (1092)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s 903 (1092)
+.++++++.||.|+.||..+|+.+.++...... -.-+.+..+|+.++.
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 457777999999999999999999888743221 112345567765553
No 256
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.69 E-value=3.3e-06 Score=86.63 Aligned_cols=216 Identities=9% Similarity=-0.007 Sum_probs=143.9
Q ss_pred ceeeEEecCCCC--CeEEEEEcCCCCCEEEEEeC--CCeEEEEEcCCceeeEeecccc-CCeEEEEEcCCCCEE-EEEeC
Q 001358 833 FKTILTIMPPSP--TATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNIL-VSSGG 906 (1092)
Q Consensus 833 ~~~~~~~~~~~~--~i~~l~~s~~d~~~lasg~~--dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l-~s~s~ 906 (1092)
.+.+.++. |.. ....++|++ ++.+.++.+. ++.|.++|+.+++.+..+.-.. .-...+++. ++.| ++.-.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 34555664 443 358999999 6655554443 5799999999999988865211 122345554 4444 44456
Q ss_pred CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCC----CcCE
Q 001358 907 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS----SVPI 981 (1092)
Q Consensus 907 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~~~~~~~~~~~h----~~~v 981 (1092)
++.+.++|..+.+.... +... .. ....+++||+.|.++ .++.|.++|..+.+.+..+..+. -..+
T Consensus 85 ~~~v~viD~~t~~v~~~--i~~g-~~-------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKN--FTHQ-MK-------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp CSEEEEEETTTTEEEEE--EECC-SS-------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CCEEEEEECCCCcEEEE--EECC-CC-------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 88999999998664432 2221 01 124577788877774 45789999999988877755432 1246
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCC---CCccCcccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001358 982 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP---TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus 982 ~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w 1058 (1092)
..+.|. ||+..+....++.|.+-|..+++...++......+. ..+....-+..++++|+....++++...+.|.+-
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 788888 786666655678999999999999999875421110 0011123446799999655678888889999999
Q ss_pred ecCCC
Q 001358 1059 EPNEP 1063 (1092)
Q Consensus 1059 ~~~~~ 1063 (1092)
++.+.
T Consensus 234 ~l~~~ 238 (266)
T 2iwa_A 234 KLHLV 238 (266)
T ss_dssp EEEEC
T ss_pred EEecc
Confidence 98654
No 257
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.68 E-value=3.9e-05 Score=89.87 Aligned_cols=379 Identities=12% Similarity=0.075 Sum_probs=202.4
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEecCCcce---------EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001358 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPV---------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 528 (1092)
Q Consensus 458 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v---------~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 528 (1092)
++.++.++.|..+|.++|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4445554459999999999998876443211 11122 2347888899999999999999988765443
Q ss_pred CC----ceE-EEEEec---CCC-EEEEEecCC--CCceeEEEEeCCCCeEEEEEeecccc--------------------
Q 001358 529 GL----GCT-RMAYSA---NGR-RLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ-------------------- 577 (1092)
Q Consensus 529 ~~----~i~-~~~~s~---dg~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-------------------- 577 (1092)
.. .+. ...+.. +|+ .++++.... ..++.|+.+|..+|+.+-........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111222 234 455543211 12678999999999987665431100
Q ss_pred ------------------CCceEEEEEcCCCCEEEEEeC--------------------C----CeEEEEECCCCceEEE
Q 001358 578 ------------------HNSVSVVHFDTAKDQILAAGD--------------------D----HVIKIWDMNKVQLLTT 615 (1092)
Q Consensus 578 ------------------~~~v~~~~~~~~~~~l~~~s~--------------------d----g~i~iwd~~~~~~~~~ 615 (1092)
...-..+++.|+...++.+.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 000123566777788887663 2 5899999999999988
Q ss_pred EeCCCCC----CCCc-eEEEc---cCCC---EEEEEeCCCeEEEEECCCCCeeeecccccc--cceeeeecCCccccccc
Q 001358 616 IDAGGGL----PENP-RICFN---KNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAG 682 (1092)
Q Consensus 616 ~~~~~~~----~~v~-~v~~s---~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~ 682 (1092)
++...+. ..+. -+.+. .+|+ .++.++.+|.++++|..+++.+........ ....+...
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~--------- 377 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLK--------- 377 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTT---------
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccccc---------
Confidence 8653221 0111 12222 4674 788899999999999999988766543221 01111000
Q ss_pred ccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEee
Q 001358 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 762 (1092)
Q Consensus 683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~ 762 (1092)
.+.........|.. +. . .+ +.....+..|.......-..++++|+...+++...+-...++.
T Consensus 378 --~g~p~~~~~~~~~~--~~-~-~~------------~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~ 439 (582)
T 1flg_A 378 --TGRPVEREGQRPPL--PE-P-GQ------------KHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWT 439 (582)
T ss_dssp --TCCEEECTTCSCCC--CC-T-TC------------SSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEE
T ss_pred --CCCEeEccccCCcc--cc-c-cc------------cCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeec
Confidence 00000000000000 00 0 00 0000001111111111122467888777777766553333332
Q ss_pred ecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCC
Q 001358 763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 842 (1092)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~ 842 (1092)
.+.. ...| ....-..+...|++. ..+|.|..||+.+++.+.+....
T Consensus 440 ~~~~------------------~~~g------------~~~~g~~~~~~p~~~----~~~G~l~A~D~~tG~~~W~~~~~ 485 (582)
T 1flg_A 440 EEVS------------------YTKG------------SAYLGMGFRIKRMYD----DHVGSLRAMDPVSGKVVWEHKEH 485 (582)
T ss_dssp CCCC------------------CCTT------------SCCCCEEEEEEESCS----SCSEEEEEECTTTCCEEEEEEES
T ss_pred cccc------------------ccCC------------CceeccceeecCCCC----CCcceEEEEECCCCCEEEEecCC
Confidence 1100 0001 111111122223310 12578999999999987766533
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCe-EEEEEcCCCCEEEE
Q 001358 843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILVS 903 (1092)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~~l~s 903 (1092)
.. +..-.+.. .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..+|+..+.
T Consensus 486 ~~-~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 486 LP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp SC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CC-CcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence 22 21111112 34578889999999999999999998887543321 12566678764443
No 258
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.67 E-value=1.4e-05 Score=93.24 Aligned_cols=383 Identities=11% Similarity=0.038 Sum_probs=202.0
Q ss_pred EEEEEeC-CCcEEEEEC-CCCceeEEEecCCcc-----------eEEEeecccC--CccEEEEEecCCeEEEEEcCCCCc
Q 001358 457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-----------VYSLCPHAKE--NIHFIFSISVDGKIKAWLYDSLGA 521 (1092)
Q Consensus 457 ~l~s~~~-d~~i~vwd~-~~~~~~~~~~~~~~~-----------v~~i~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~ 521 (1092)
.++.++. ++.|.-+|. .+|+.+.++...... ...+++.+.. ...+++.++.|+.+..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4666666 889999999 899999877543211 0122331111 112378888999999999999988
Q ss_pred eEEecCCCC----ceEE-EEEecCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeeccccC----------------
Q 001358 522 RVDYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQH---------------- 578 (1092)
Q Consensus 522 ~~~~~~~~~----~i~~-~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~---------------- 578 (1092)
+........ .+.+ ..+ .++ .+++++... ..++.|+.+|..+|+.+-.+.......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 776544321 1111 111 244 444443211 125789999999999987766432000
Q ss_pred ------------------Cce-EEEEEcCCCCEEEEEeCC----------------CeEEEEECCCCceEEEEeCCCCCC
Q 001358 579 ------------------NSV-SVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 579 ------------------~~v-~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
..+ ..+++.++...++.+..+ +.|..+|..+|+.+..++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 000 134566777888887765 389999999999998887643311
Q ss_pred ----CCce-EEEc---cCC---CEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecC
Q 001358 624 ----ENPR-ICFN---KNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1092)
Q Consensus 624 ----~v~~-v~~s---~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1092)
.... +.+. .+| ..++.++.+|.+.++|..+++.+.........-..-.+. ...+...+..
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~---------~~~g~p~~~~ 372 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD---------LKTGQPVRDP 372 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC---------TTTCCEEECG
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc---------cCCCceeecc
Confidence 0111 2222 467 567778899999999999998776543211000000000 0000000000
Q ss_pred CCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCc
Q 001358 693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772 (1092)
Q Consensus 693 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~ 772 (1092)
...+ .+.....+..|.......-..++++|+...+++...+....++..+..
T Consensus 373 ~~~~----------------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~------ 424 (599)
T 1w6s_A 373 EYGT----------------------RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP------ 424 (599)
T ss_dssp GGCC----------------------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC------
T ss_pred ccCC----------------------CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc------
Confidence 0000 000001111111111122235688999888877776633322211000
Q ss_pred ccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEc
Q 001358 773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 852 (1092)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 852 (1092)
...+.. .-..-..+..+|.+.-......|.+..||+.+++.+.+.......... .+.
T Consensus 425 ------------~~~g~~----------~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-~~~ 481 (599)
T 1w6s_A 425 ------------YKAGQF----------FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG-TMA 481 (599)
T ss_dssp ------------CCTTSC----------CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB-CEE
T ss_pred ------------ccCCcc----------eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc-ceE
Confidence 000100 000000011112110000002477889999999887766422111111 122
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCe-EEEEEcCCCCEEE
Q 001358 853 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILV 902 (1092)
Q Consensus 853 ~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~~l~ 902 (1092)
. .+.+++.++.||.++.||.++|+.+.+++-..+.+ .-+.+..+|+..+
T Consensus 482 t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 482 T-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (599)
T ss_dssp E-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred e-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence 2 35577789999999999999999998886433211 1245556776433
No 259
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.66 E-value=1.1e-05 Score=94.55 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=68.6
Q ss_pred EEEEEec-CCeEEEEEc-CCCCceEEecCCCCc-----------eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001358 501 FIFSISV-DGKIKAWLY-DSLGARVDYDAPGLG-----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 501 ~l~s~~~-dg~i~vwd~-~~~~~~~~~~~~~~~-----------i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
.++.++. ++.|..+|. .+++.+..+...... ...+++ ++..++.++. ++.|+.+|..+|+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA----NGHLLALDAKTGKI 137 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC----CCEEEEEECCCCCE
Confidence 5566666 788888888 788877665443210 011222 3455666643 56799999999998
Q ss_pred EEEEeeccccC-CceEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCceEEEEeCC
Q 001358 568 KRTYQGLQLQH-NSVSV-VHFDTAKDQILAAGD------DHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 568 ~~~~~~~~~~~-~~v~~-~~~~~~~~~l~~~s~------dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
+-.+....... ..+.+ ... .+..+++++. ++.|+.+|..+|+.+..+...
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 87665322000 01111 011 1346666654 799999999999999887653
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.63 E-value=5.7e-05 Score=88.46 Aligned_cols=167 Identities=14% Similarity=0.159 Sum_probs=106.8
Q ss_pred EEEEcCCCCCEEEEEeC--------------------C----CeEEEEEcCCceeeEeecc--cc--------CCeEEEE
Q 001358 848 SLAFNPHDNNVIAIGMD--------------------D----STILIYNARSSEVISKLEG--HS--------KRVTGLV 893 (1092)
Q Consensus 848 ~l~~s~~d~~~lasg~~--------------------d----g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~ 893 (1092)
.++++| +..+++.+.. | +.|.-+|..+|+.+..++. |. .++. +.
T Consensus 250 ~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~ 327 (582)
T 1flg_A 250 SASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FD 327 (582)
T ss_dssp CCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EE
T ss_pred CceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Ee
Confidence 467777 5567776653 2 6899999999999887753 32 1222 12
Q ss_pred Ec-CCCC---EEEEEeCCCcEEEEEcCCCceeeeeeeec------------------CCCCc--------C---------
Q 001358 894 FS-DALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT------------------PDGVM--------T--------- 934 (1092)
Q Consensus 894 ~s-pdg~---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~------------------~~~~~--------~--------- 934 (1092)
.. .+|+ .++.++.+|.++++|..+++..-...... ..... .
T Consensus 328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~ 407 (582)
T 1flg_A 328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP 407 (582)
T ss_dssp EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred eecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence 21 4674 78889999999999999987553222110 00000 0
Q ss_pred CC--CCceEEEEecCCCEEEE-Ee---------------------------------CCcEEEEEcCCceeeeeeccCCC
Q 001358 935 LA--PSETHIQFHKDQTRFLL-VH---------------------------------ETHLAIYEAEELTCLKQWFPISS 978 (1092)
Q Consensus 935 ~~--~~v~~l~~s~dg~~la~-~~---------------------------------d~~v~lwd~~~~~~~~~~~~~h~ 978 (1092)
.. ..-..++++|+..++.+ .. ++.|.-||+.+|+.+-+...+
T Consensus 408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-- 485 (582)
T 1flg_A 408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-- 485 (582)
T ss_dssp TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--
T ss_pred CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--
Confidence 00 00124677887665554 21 467999999999887654322
Q ss_pred cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeecc
Q 001358 979 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 979 ~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
.++..-.....|.+++.++.||.++.||..+|+.+.++..
T Consensus 486 ~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 486 LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 2222222333566888899999999999999999998874
No 261
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.60 E-value=5e-06 Score=83.91 Aligned_cols=185 Identities=14% Similarity=0.070 Sum_probs=130.3
Q ss_pred eeEEEeeCCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcce-EEEeecccCCccEEEEEecCCeEEEEEcCCCC
Q 001358 444 VNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 520 (1092)
Q Consensus 444 v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 520 (1092)
...+.|+ ++. ++++.+.+| .|+++|+++|+.+.++....... ..+++ .+ +.+.+..-.++.+.++|..+.+
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g-~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WK-DKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eC-CEEEEEEeeCCEEEEEECccCc
Confidence 4788898 664 667777766 89999999999998886443221 22443 22 2455555568999999999999
Q ss_pred ceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc--cCCceEEEEEcCCCCEEEEEeC
Q 001358 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGD 598 (1092)
Q Consensus 521 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~ 598 (1092)
.+..+...... ..+++|++.|+... +...|.++|+.+.+.+..+..... ....++.+.|. +|...+..-.
T Consensus 119 ~~~ti~~~~eG---~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 119 QVRSFNYDGEG---WGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp EEEEEECSSCC---CCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred EEEEEECCCCc---eEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence 88877654422 34557888887763 256799999999999888765320 11334557776 6654444447
Q ss_pred CCeEEEEECCCCceEEEEeCCCC----------CCCCceEEEccCCCEEEEEeC
Q 001358 599 DHVIKIWDMNKVQLLTTIDAGGG----------LPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
++.|.+.|..+++.+..+...+- ....+.+||+|+++.|.+.+.
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 88999999999999999876421 123478999999888887776
No 262
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.55 E-value=1.1e-05 Score=98.45 Aligned_cols=250 Identities=9% Similarity=-0.012 Sum_probs=134.5
Q ss_pred CceEEeec-CCCceEEEEEcCcC----cEEEEecCCC-CceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCC
Q 001358 336 SPMSMDFH-PVQHTLLLVGTNVG----DTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 336 ~V~~v~~s-pdg~~llasg~~d~----~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
.+...+|| |||++++.+.+.+| +|+++|+.+| +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 67889999 99996554444333 4999999998 63321 0 10 1134688999999
Q ss_pred EEEEEeCC-----CEEEEEEccCCCCccceEEec-ccccceeEEEeeCCCCcEEEEEEe-CCCcEEEEECCCCc-ee--E
Q 001358 410 LLGVAYSK-----HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGS-RT--Y 479 (1092)
Q Consensus 410 ~las~~~d-----~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~l~l~s~~-~d~~i~vwd~~~~~-~~--~ 479 (1092)
.|+....+ ..|.++++.++...... .+. ........+.|||||+++++.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99887654 36888888776422111 222 223346678999999963333322 23468888988762 22 3
Q ss_pred EE-ecCCcceEEEeecccCCccEEEEEecC--C--eEEEEEcCCCCceEE-ecCCCCceEEEEEecCCCEEEEEecCCCC
Q 001358 480 SF-EGHGAPVYSLCPHAKENIHFIFSISVD--G--KIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 480 ~~-~~~~~~v~~i~~~~~~~~~~l~s~~~d--g--~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
.+ ........++.|+ .++.+++....+ + .|..+++.+...... +..+...+.--.+++++..|+.... .++
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~-~~g 389 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGR-RAG 389 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEE-ETT
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEE-eCC
Confidence 33 2334444554432 233444444443 2 466666654222122 2222222222234445666665543 234
Q ss_pred ceeEEEEeC-------CCCeEEEEEeeccccCCceEEEEE----cCCCCEE-EEEeCC---CeEEEEECCCCce
Q 001358 554 ESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHF----DTAKDQI-LAAGDD---HVIKIWDMNKVQL 612 (1092)
Q Consensus 554 ~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l-~~~s~d---g~i~iwd~~~~~~ 612 (1092)
...|+++++ .+++....+.... ...+..+.+ ++++..+ ++.+.. +.++.+|+.+++.
T Consensus 390 ~~~l~~~dl~~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 390 LTRIWTMMADSQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp EEEEEEEECCTTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred EEEEEEEecccccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 667888886 4444123332111 112333322 3455544 443322 4677788877764
No 263
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.52 E-value=0.0066 Score=74.34 Aligned_cols=572 Identities=13% Similarity=0.068 Sum_probs=299.2
Q ss_pred CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE
Q 001358 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
...|.++.-..+|...++ +.+| +..||-.. ...+.. . -......|.++....+| .|-.
T Consensus 21 ~n~V~~I~qD~~G~lWig--T~~G-L~ryDG~~---~~~~~~-----~----------~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIG--SNKG-LFSYDGYS---TQQHFT-----Y----------GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSCEEEE--ESSC-EEEECSSC---EEECSC-----T----------TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCCEEEE--ECCC-ccccCCCc---eEEEEc-----c----------CCCCCceEEEEEEcCCC-cEEE
Confidence 347999999999974444 4555 55666321 111000 0 00123568888877766 5556
Q ss_pred EeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe-----cCCcce
Q 001358 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----GHGAPV 488 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~~~~v 488 (1092)
|+.+| +..||..++.... ........|.++.. .+|. +..++.+ -+..+|..+++.. .+. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence 66666 8899988753221 01112235777654 3554 4445545 6888998776543 331 112356
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecC----CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
.++.. +.++.+.+ ++.+| +..++..+...... ... ....|.++...+++..|..+.. +-+..+|..
T Consensus 149 ~~i~~--d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIR--TKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPS 219 (758)
T ss_dssp EEEEE--CTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETT
T ss_pred EEEEE--cCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCC
Confidence 66655 33444444 55544 66677655432211 111 1224788888877775555542 128889988
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC-----CCCCCceEEEccCCCEEE
Q 001358 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~ 638 (1092)
+++........ ...|.++....++.. ..|+. +-+.+++..++.......... ....|.++....+|. |.
T Consensus 220 ~~~~~~~~~l~---~~~i~~i~~d~~g~l-WigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW 293 (758)
T 3ott_A 220 TGQIKQTEAFH---NNSIKSLALDGNGDL-LAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IW 293 (758)
T ss_dssp TTEEEEEEEEE---EEEEEEEEECTTCCE-EEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EE
T ss_pred CCeEEeccCCC---CCeEEEEEEcCCCCE-EEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EE
Confidence 77653322111 246888888877654 44554 458888887765433221110 112356666666665 44
Q ss_pred EEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeec
Q 001358 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~ 718 (1092)
+|+..| +.++.... ...... ..
T Consensus 294 iGT~~G-l~~~~~~~--~~~~~~-----------------------------------------------------~~-- 315 (758)
T 3ott_A 294 LGTDYG-ISLSRYNS--ALQFIP-----------------------------------------------------IS-- 315 (758)
T ss_dssp EEESSS-EEEECCCC---CEEEE-----------------------------------------------------HH--
T ss_pred EEeCCc-ccccccCC--ceeEEe-----------------------------------------------------cc--
Confidence 455555 43332211 000000 00
Q ss_pred cCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCC
Q 001358 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 798 (1092)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 798 (1092)
..........|.++....+|...+.+ .+|. ..++...... .....+...... ..+
T Consensus 316 --------~~~~~~~~~~v~~i~~D~~g~lWiGt-~~Gl-~~~~~~~~~~---------~~~~~~~~~~~~----~~l-- 370 (758)
T 3ott_A 316 --------QITGTGDGNQFYSLFRDSKGFYWFGG-ANGL-IRFTDPAGER---------HDAIWYRMGDKT----YPL-- 370 (758)
T ss_dssp --------HHSCSCCCCBEEEEEECTTCCEEEEE-TTEE-EEESCTTSSC---------CCCEEECTTCSS----SCC--
T ss_pred --------cCCCCCCCceEEEEEEcCCCCEEEee-CCcc-eeeccccccc---------ceeEEeccCCcC----CCC--
Confidence 00000022356777777778755544 4553 3333211100 001111100000 001
Q ss_pred CCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEe--cC----CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001358 799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--MP----PSPTATSLAFNPHDNNVIAIGMDDSTILIYN 872 (1092)
Q Consensus 799 ~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd 872 (1092)
....|.++.-.++|++.+.. ++-+..+|..+++..... .. ....|.++...+ ++. |-.|+..+-+.++|
T Consensus 371 --~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~ 445 (758)
T 3ott_A 371 --SHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVD 445 (758)
T ss_dssp --SCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEE
T ss_pred --CCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEc
Confidence 23568888888888876654 667999998877654321 11 224578888876 554 55577766688888
Q ss_pred cCCc-----eee---Eeec---c-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001358 873 ARSS-----EVI---SKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 940 (1092)
Q Consensus 873 ~~~~-----~~~---~~l~---~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1092)
..+. ... ..+. + ....|.++...++|++.+.++..+-|..+|..+++... +.. ... .....+.
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~---~~~-~~~-~~~~~~~ 520 (758)
T 3ott_A 446 KHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK---LFA-DEL-TGEKSPN 520 (758)
T ss_dssp HHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE---ECT-TTS-CGGGCEE
T ss_pred cccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE---ecC-CCc-CCCcccc
Confidence 6531 111 1111 1 12358999999999877644444558889988754332 111 110 0012477
Q ss_pred EEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccC-CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccc
Q 001358 941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019 (1092)
Q Consensus 941 ~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~ 1019 (1092)
++....+|.+.+.+. +.+..|+..++....-...+ ....|.++... +|.+.+ ++..| +..+|..+.+... +.
T Consensus 521 ~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~lWi-~t~~G-l~~~~~~~~~~~~-~~-- 593 (758)
T 3ott_A 521 YLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNSIWV-STTNG-LWIIDRKTMDARQ-QN-- 593 (758)
T ss_dssp EEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTEEEE-EESSC-EEEEETTTCCEEE-C---
T ss_pred eEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCCEEE-ECCCC-eEEEcCCCceeEE-ec--
Confidence 888888898877654 56888887665432210111 13567888764 665444 55555 7788888776542 11
Q ss_pred cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001358 1020 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 1020 ~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
++.. .+. -++...+ ...|..|+.+|- ..++...
T Consensus 594 --~~~~----~~~-~~~~~~~--~G~l~fG~~~Gl-~~f~p~~ 626 (758)
T 3ott_A 594 --MTNK----RFT-SLLFDPK--EDCVYLGGADGF-GISHSNL 626 (758)
T ss_dssp ---CCC----CCS-EEEEETT--TTEEEEECBSEE-EEEEC--
T ss_pred --CCCC----cee-eeEEECC--CCcEEEecCCce-EEEChhh
Confidence 1111 122 1222233 357888888875 4455543
No 264
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.49 E-value=8.2e-06 Score=82.35 Aligned_cols=184 Identities=12% Similarity=0.109 Sum_probs=125.2
Q ss_pred eeEEEEecCCCEEEEEe-CC--eEEEEEcCCceeeEEecCCCCC-eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeE
Q 001358 805 VPCFALSKNDAYLFSAS-GG--VISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 880 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s-dg--~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 880 (1092)
...+.|+ ++.++.+.+ +| .|+++|+++++.+..+.-.... .-.+++. ++++.+....++.+.+||..+.+.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEE
Confidence 4678898 666655555 44 7999999999998887644322 2335554 34555555668999999999999999
Q ss_pred eeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcE
Q 001358 881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 959 (1092)
Q Consensus 881 ~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v 959 (1092)
++..-. ....+++|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.|. +|+..+.. .++.|
T Consensus 122 ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~~~I 194 (262)
T 3nol_A 122 SFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQTNKI 194 (262)
T ss_dssp EEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccCCeE
Confidence 887422 223444678877776667889999999876554333321 11110 134557776 77655554 56789
Q ss_pred EEEEcCCceeeeeeccCC-----------CcCEEEEEEecCCCEEEEEeC
Q 001358 960 AIYEAEELTCLKQWFPIS-----------SVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 960 ~lwd~~~~~~~~~~~~~h-----------~~~v~~l~fs~dg~~l~t~s~ 998 (1092)
.+.|..+|+.+..+-.+. ..-...++|+|+++.|++.+.
T Consensus 195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 999999999887754320 235688999999888777764
No 265
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.49 E-value=6.8e-05 Score=81.29 Aligned_cols=268 Identities=10% Similarity=0.033 Sum_probs=149.3
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeee--eeecccccceeEEeeecCCCCcEEEEEECC
Q 001358 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK--VWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
.+.+.-....+++|+++|+ ++.++..++.|..||..++....- ... .+....|..... .........+..+++.+
T Consensus 13 ~~~g~~~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~~~~~~~~~p~gi~~~~ 89 (322)
T 2fp8_A 13 LIEAPSYAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVDF-AYASPYWNKAFCENSTD-AEKRPLCGRTYDISYNL 89 (322)
T ss_dssp EEECSSSCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEEE-EESCTTCCHHHHTTCCC-GGGHHHHCCEEEEEEET
T ss_pred ecCCccCCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEEE-ecccccccccccccccc-hhccccCCCCceEEEcC
Confidence 3444434678899999998 566777889999999876643210 000 000000000000 00000113578899998
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCCCccceE-Eecc-cccceeEEEeeC-CCCcEEEEEEeC-----------------CC
Q 001358 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQL-EIDA-HVGNVNDLAFSA-PCKQISVITCGD-----------------DK 465 (1092)
Q Consensus 407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~-~l~~-h~~~v~~~~~s~-d~~~l~l~s~~~-----------------d~ 465 (1092)
+|+ |.++...+.|..+|..++.. .... ...+ .......+++.+ +|. +.++... ++
T Consensus 90 ~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 90 QNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp TTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred CCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCc
Confidence 555 55554445588888776532 1111 1111 113467899999 887 5554422 36
Q ss_pred cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEE-EEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEecCCC
Q 001358 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGR 542 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~ 542 (1092)
.|..||..+++....... ....+.++++ +++.+|+ +-+..+.|.++++.... ....+....+ ...+++.++|+
T Consensus 166 ~v~~~d~~~~~~~~~~~~-~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 166 RLIKYDPSTKETTLLLKE-LHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH 241 (322)
T ss_dssp EEEEEETTTTEEEEEEEE-ESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC
T ss_pred eEEEEeCCCCEEEEeccC-CccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC
Confidence 788999877765332222 2234567774 4666554 44667899999987531 1111111222 77899999998
Q ss_pred EEEEEecCC------CCceeEEEEeCCCCeEEEEEeecccc-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001358 543 RLFSCGTSK------EGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1092)
Q Consensus 543 ~l~~~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1092)
..++..... ...+.|..+|.. ++.+..+...... ...+..+++ .++..+++...++.|.++++..
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 766654210 013568889874 7777777654210 134566666 3444444445677888888753
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.49 E-value=2.7e-05 Score=84.45 Aligned_cols=240 Identities=10% Similarity=-0.010 Sum_probs=146.8
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEec-----------------ccccceeEEEeeC-CCCcEEE
Q 001358 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-----------------AHVGNVNDLAFSA-PCKQISV 458 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-----------------~h~~~v~~~~~s~-d~~~l~l 458 (1092)
.....++|.++|+++.++..++.|..||..+++. ....... ........+++.+ +++ |
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~---l 94 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ---L 94 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE---E
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc---E
Confidence 4566789999999888888889999999876532 1111000 0123578899998 665 4
Q ss_pred EEEeCCCcEEEEECCCCceeEEEec-----CCcceEEEeecccC-CccEEEEEec-----------------CCeEEEEE
Q 001358 459 ITCGDDKTIKVWDAVTGSRTYSFEG-----HGAPVYSLCPHAKE-NIHFIFSISV-----------------DGKIKAWL 515 (1092)
Q Consensus 459 ~s~~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~i~~~~~~-~~~~l~s~~~-----------------dg~i~vwd 515 (1092)
+.+...+.|..+|..+++. ..+.. .....+.+++ .+ +|.+.++... +|.|..+|
T Consensus 95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~--d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTV--DQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEE--CTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEE--ecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 4444455588899776543 22221 1123566776 44 5566665432 36688887
Q ss_pred cCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCCEE
Q 001358 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQI 593 (1092)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l 593 (1092)
..+........ .......++++++|+.|+.+.. ..+.|+.++..... ....+.... + ...+++.++|+..
T Consensus 172 ~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~~G~l~ 243 (322)
T 2fp8_A 172 PSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNADGHFW 243 (322)
T ss_dssp TTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECTTSCEE
T ss_pred CCCCEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECCCCCEE
Confidence 76554322211 1123456899999997776643 24579999987531 112222222 3 7789999999866
Q ss_pred EEEeC----------CCeEEEEECCCCceEEEEeCCCC--CCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358 594 LAAGD----------DHVIKIWDMNKVQLLTTIDAGGG--LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 594 ~~~s~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
++... .+.|..+|. .++.+..+....+ ...+..+++ .+++++++...++.|..+++..
T Consensus 244 va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 244 VSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 66544 467888887 4777777765432 234566666 4566666555678899988764
No 267
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.47 E-value=3.9e-05 Score=77.31 Aligned_cols=185 Identities=10% Similarity=0.109 Sum_probs=128.0
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001358 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
.-...+.|+ ++.+..+.+.+|.|+++|+++++.++.. +.. ........++++. +.+..-.++.+.++|.++.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTTE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcCc
Confidence 445778887 4666677788889999999999987754 333 2333223345555 44456678999999999999
Q ss_pred eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CC---ceEEEEEecCCCEEEEEecCC
Q 001358 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GL---GCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~---~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
.+.++..... -..++. |++.|+.+..++.|.++|..+.+....+.-. .. .+..+.+. +|+ |.+...
T Consensus 128 ~~~ti~~~~e-GwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw-- 198 (268)
T 3nok_A 128 RERTTRYSGE-GWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW-- 198 (268)
T ss_dssp EEEEEECSSC-CCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET--
T ss_pred EEEEEeCCCc-eeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC--
Confidence 9999975332 234443 4567777777999999999988876655432 22 34566776 775 444432
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccc----------cCCceEEEEEcCCCCEEEEEeC
Q 001358 552 EGESFLVEWNESEGAIKRTYQGLQL----------QHNSVSVVHFDTAKDQILAAGD 598 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~s~ 598 (1092)
....|.+.|+.+|+.+..+..... .....+.++++|+++.|++.+.
T Consensus 199 -~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 -HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 245799999999999988875311 1245789999999888877664
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.46 E-value=8.9e-05 Score=79.57 Aligned_cols=228 Identities=13% Similarity=0.107 Sum_probs=138.7
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC-CC-cEEEEECCC
Q 001358 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK-TIKVWDAVT 474 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-d~-~i~vwd~~~ 474 (1092)
.....++|+++|+++++-..++.|..||..++. ... + ........+++.++|+ ++++... ++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIH--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEE--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEE--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 457789999999977776678899999987632 211 1 2234688999999998 4554433 32 477778778
Q ss_pred CceeEEEec-CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-e-------c--CCCCceEEEEEecCCCE
Q 001358 475 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-Y-------D--APGLGCTRMAYSANGRR 543 (1092)
Q Consensus 475 ~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~-------~--~~~~~i~~~~~s~dg~~ 543 (1092)
++....... .......++.. .++..+++...++.|.++|......... . . ..-.....+ ++|++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 875433221 11222344432 2334455555688888888765321111 0 0 111234455 889988
Q ss_pred EEEEecCCCCceeEEEEeCCC-CeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC
Q 001358 544 LFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1092)
|+.+.. ..+.|+.++... ++. ...+... .....+++.++|+..++....+.|.+++.. ++.........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~ 252 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ 252 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence 877653 356799999864 332 1122111 245668899999876766678899999975 65533222222
Q ss_pred CCCCCceEEEc---cCCCEEEEEeCC
Q 001358 621 GLPENPRICFN---KNGTLLAVIANE 643 (1092)
Q Consensus 621 ~~~~v~~v~~s---~~~~~l~~~~~d 643 (1092)
......+++|. |+++.|++.+..
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccCCceEEEEecccCCCCEEEEECCC
Confidence 22456889998 888877776654
No 269
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.46 E-value=6.6e-06 Score=82.90 Aligned_cols=184 Identities=9% Similarity=0.077 Sum_probs=124.3
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCC-CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEe
Q 001358 804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 881 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 881 (1092)
-...+.|+. +.++.+.+ +|.|+++|+++++.+..+ -... ..-.+++. ++++.+....++.+.+||..+.+.+.+
T Consensus 56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 346788873 44444444 588999999999988887 2222 22346665 355666667789999999999999998
Q ss_pred eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEE
Q 001358 882 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 960 (1092)
Q Consensus 882 l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~ 960 (1092)
+..- ..-..+ ++|++.|+.+..++.|.++|..+.+......+....... ..+..+.|. +|+..+.. ..+.|.
T Consensus 132 i~~~-~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v---~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 132 TRYS-GEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV---ELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp EECS-SCCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred EeCC-CceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc---ccccccEEe-CCEEEEEECCCCeEE
Confidence 8742 222333 467888888777889999999987655533332211111 135667777 77655554 567899
Q ss_pred EEEcCCceeeeeeccC------------CCcCEEEEEEecCCCEEEEEeC
Q 001358 961 IYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 961 lwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~s~ 998 (1092)
+.|..+|+.+..+-.+ -..-...++++|+++.|++.+.
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999999987765322 1235688999998766655543
No 270
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.44 E-value=0.00048 Score=74.43 Aligned_cols=234 Identities=9% Similarity=0.042 Sum_probs=132.5
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEec---CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001358 802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1092)
...+.++.+.+ +..++++..+.|.. ....|+.-.... .+...+..+++.+ ++..++++ .+|.|.. ..+.|+.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCC
Confidence 44678899986 55666665664433 222233222222 2334577888876 66666655 4564432 2222332
Q ss_pred e-EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCC
Q 001358 879 I-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 957 (1092)
Q Consensus 879 ~-~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~ 957 (1092)
= ....++...+..+++.+++.+++.+...+..+-+|-.... ...+.... ...+..+++++++++++++.++
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~t---W~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~G 225 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA---WEPHNRTT-----SRRLHNMGFTPDGRLWMIVNGG 225 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSS---CEEEECCS-----SSCEEEEEECTTSCEEEEETTT
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCc---eeECCCCC-----CCccceeEECCCCCEEEEeCCc
Confidence 1 1223455678999999998888766444333333321111 11222211 1257899999999988888888
Q ss_pred cEEEEEcCCceeeeeeccC---CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccce
Q 001358 958 HLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus 958 ~v~lwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
.+++.+...|+.......+ +...+.++.+.+++..++++ .+|.| ++..+.|+.-..+......+. .++
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-----~~~-- 296 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-----NFY-- 296 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-----CCC--
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-----CeE--
Confidence 8877654435443332212 23468899999888877765 57766 566666755433331111111 244
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEEe
Q 001358 1035 AIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1035 ~~~~~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
++.+.+ +..+++++.+|.|.-++
T Consensus 297 ~v~~~~--~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 297 KILFFS--PDQGFILGQKGILLRYV 319 (327)
T ss_dssp EEEEEE--TTEEEEECSTTEEEEEC
T ss_pred EEEEEC--CCceEEEcCCceEEEEc
Confidence 455543 35688888999776654
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.42 E-value=1.1e-05 Score=97.11 Aligned_cols=277 Identities=10% Similarity=0.040 Sum_probs=155.9
Q ss_pred EEeecC-CCceEEEEEcCcC-----------cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358 339 SMDFHP-VQHTLLLVGTNVG-----------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 339 ~v~~sp-dg~~llasg~~d~-----------~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
++++.| +|+ +++.|+.+. .+.+||..+++-..... ....+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCCC
Confidence 567777 787 777776432 57888888775332100 1122333444678889
Q ss_pred CCCEEEEEeC-CCEEEEEEccCCCCccceEEecccccc-eeEEEeeCCCCcEEEEEEe-CC-----CcEEEEECCCCcee
Q 001358 407 DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQISVITCG-DD-----KTIKVWDAVTGSRT 478 (1092)
Q Consensus 407 dg~~las~~~-d~~i~iwd~~~~~~~~~~~~l~~h~~~-v~~~~~s~d~~~l~l~s~~-~d-----~~i~vwd~~~~~~~ 478 (1092)
+|+.+++|+. +..+.+||..+++-.. ...+ +..+ -.+++..++++ +++.|+ .+ ..+.+||..+++..
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~--~~~R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDM--QVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCC--SSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeE-CCCC--CccccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 9999999984 4579999998764221 1111 1111 23456667888 777777 34 57999999887643
Q ss_pred EEEecC-CcceE----EEeecccCCccEEEEEecCC---------eEEEEEcCCCCceEEecCC---------CCceEEE
Q 001358 479 YSFEGH-GAPVY----SLCPHAKENIHFIFSISVDG---------KIKAWLYDSLGARVDYDAP---------GLGCTRM 535 (1092)
Q Consensus 479 ~~~~~~-~~~v~----~i~~~~~~~~~~l~s~~~dg---------~i~vwd~~~~~~~~~~~~~---------~~~i~~~ 535 (1092)
.. ... ..+.. ...+ ..++..++.++.+| .+..||..+..-....... ...-.++
T Consensus 328 ~~-~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 328 SL-PNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EE-TTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred eC-CCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 32 100 00000 0011 12344555565554 4677887765432221111 1122344
Q ss_pred EEec-CCCEEEEEecCCC----Cce---eEEEEeCCCCeEEEEE--eeccccCCceEEEEEcCCCCEEEEEeCC------
Q 001358 536 AYSA-NGRRLFSCGTSKE----GES---FLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDD------ 599 (1092)
Q Consensus 536 ~~s~-dg~~l~~~~~~~~----~~~---~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~d------ 599 (1092)
.+.. +++.+++++.... ... .+.+||..+....... .... ...-.+++..|+++.++.|+.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~~~~ 482 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFE 482 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCcCcC
Confidence 4543 6777777764221 011 6888998887654433 1111 1223455677899999998754
Q ss_pred -----CeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358 600 -----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 600 -----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
..+.+||..+.+....-.............+.|+|+.++.|+.
T Consensus 483 ~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 483 DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999988665432222211112234556789999999885
No 272
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.42 E-value=0.0008 Score=73.37 Aligned_cols=249 Identities=11% Similarity=-0.012 Sum_probs=155.0
Q ss_pred CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE
Q 001358 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
.+..+|.+..+++. ++.+ ....|+..++........ .. ....+..++|++.+..|..
T Consensus 33 ~d~~~C~~~~~~~~-ll~~--~~~~I~~i~~~g~~~~~~-------------------~~-~~~~~~~l~~d~~~~~ly~ 89 (349)
T 3v64_C 33 PDRRSCKALGPEPV-LLFA--NRIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFW 89 (349)
T ss_dssp TTSSCEEESSSCCE-EEEE--CBSCEEEECTTSCCEEEE-------------------EC-SCSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccccCce-eEee--cccceEEEeCCCCeeEEe-------------------ec-CCCceEEEEEeccccEEEE
Confidence 34567877777553 4443 235688888766543221 22 3345889999987666665
Q ss_pred E-eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEe
Q 001358 414 A-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1092)
Q Consensus 414 ~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~ 492 (1092)
+ ...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.+++.......+.........++
T Consensus 90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 5 456789999998764221 12222334578999986664 456666678999999775543333333445567888
Q ss_pred ecccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001358 493 PHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
+.+. ++.++++-... +.|...+++.................++++|++..|+.+-. +.+.|..+|.........+
T Consensus 166 vdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 166 LHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp EETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred EecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence 8653 34455555555 78888888765444433333446789999998888877643 2567999998754333333
Q ss_pred eeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001358 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
.... .....+++. .+..+++-...+.|..++..+|+....+.
T Consensus 242 ~~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 242 SQGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp CSSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCC---CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 456677773 34444455567888888877777666654
No 273
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.41 E-value=6.9e-05 Score=75.01 Aligned_cols=186 Identities=12% Similarity=0.069 Sum_probs=129.3
Q ss_pred ceeEEEeeCCCCcEEEEEEeCC--CcEEEEECCCCceeEEEecCCcce-EEEeecccCCccEEEEEecCCeEEEEEcCCC
Q 001358 443 NVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSL 519 (1092)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 519 (1092)
-...+.|++ +. ++.+.+.+ +.|+++|+++|+.+.++....... ..+++ . ++++.+..-.++.+.++|..+.
T Consensus 22 ftqGL~~~~-~~--LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~-~~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 22 FTEGLFYLR-GH--LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--W-RDRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp CEEEEEEET-TE--EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--E-TTEEEEEESSSSEEEEEETTTT
T ss_pred ccccEEEEC-CE--EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--e-CCEEEEEEeeCCEEEEEECCcC
Confidence 466889986 44 66677765 489999999999998886443322 23333 2 2355566667899999999999
Q ss_pred CceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc--cCCceEEEEEcCCCCEEEEEe
Q 001358 520 GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAG 597 (1092)
Q Consensus 520 ~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s 597 (1092)
+.+.++.....+ ..+.+|+..|+.+. +...|.++|..+.+.++.+..... ....++.+.+. +|...+...
T Consensus 96 ~~~~ti~~~~~G---wglt~dg~~L~vSd----gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw 167 (243)
T 3mbr_X 96 TPRARFRYPGEG---WALTSDDSHLYMSD----GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW 167 (243)
T ss_dssp EEEEEEECSSCC---CEEEECSSCEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred cEEEEEeCCCCc---eEEeeCCCEEEEEC----CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence 888877655433 34457788777763 366799999999999888765330 11245566665 555444444
Q ss_pred CCCeEEEEECCCCceEEEEeCCC-----------CCCCCceEEEccCCCEEEEEeC
Q 001358 598 DDHVIKIWDMNKVQLLTTIDAGG-----------GLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
.+..|.+.|..+|+.+..+...+ .....+.+|++|+++.|.+.+.
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 68899999999999999987542 1123478999998887777765
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.39 E-value=0.00017 Score=73.41 Aligned_cols=207 Identities=8% Similarity=0.009 Sum_probs=134.3
Q ss_pred EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+.|.|-.+++..++|+|++..|.++...++.|...|.. |+.++... +.+ ....-.|++.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~ 80 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGD 80 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECST
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCC
Confidence 46777777999999999887788888888999999998 77665422 222 256788999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCCccceEEe--c----ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC---CCcee
Q 001358 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEI--D----AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRT 478 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l--~----~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~ 478 (1092)
+.++++.-.++.+.++++.....+...... . ........++|+|+++. |+++.......||.+. .+..+
T Consensus 81 g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l 158 (255)
T 3qqz_A 81 NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNEL 158 (255)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCC
T ss_pred CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCce
Confidence 987777656778999998765432211111 1 12345689999999985 3333333333444432 12222
Q ss_pred EEEe-------cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CceEEEEEecCCC
Q 001358 479 YSFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSANGR 542 (1092)
Q Consensus 479 ~~~~-------~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s~dg~ 542 (1092)
..+. .+...+.++++++. .+++++.....+.+.++|.+.. .+..+.... .....|+|.++|+
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred eeecchhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 2221 12345678888875 4578888888888999987644 333332221 2568999999998
Q ss_pred EEEEEecCCCCceeEEEEeC
Q 001358 543 RLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~ 562 (1092)
..++ +. .+.++.+..
T Consensus 237 lyIv-sE----~n~~y~f~~ 251 (255)
T 3qqz_A 237 IYIV-SE----PNRFYRFTP 251 (255)
T ss_dssp EEEE-ET----TTEEEEEEC
T ss_pred EEEE-cC----CceEEEEEe
Confidence 5555 43 345666654
No 275
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.36 E-value=6.5e-05 Score=90.27 Aligned_cols=121 Identities=12% Similarity=0.185 Sum_probs=76.8
Q ss_pred EEEEec-CCCEEEEEecCCC-------CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEE
Q 001358 534 RMAYSA-NGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKI 604 (1092)
Q Consensus 534 ~~~~s~-dg~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~i 604 (1092)
..++.+ +++.++.++...+ ....+.+||+.+++................++++..++..++.|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456777 8888888775432 123689999998865432222111112334567788898888887 4568999
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe-CC-----CeEEEEECCCCC
Q 001358 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE-----NRIKILETPESN 655 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d-----g~i~iw~~~~~~ 655 (1092)
||..+.+....-..+.. ..-..++..+++++++.|+ .+ ..+.+||..+.+
T Consensus 270 yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 99988765544322221 1123566667899999988 34 457788876653
No 276
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.36 E-value=0.0004 Score=74.46 Aligned_cols=227 Identities=11% Similarity=0.029 Sum_probs=136.5
Q ss_pred ccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001358 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1092)
Q Consensus 735 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg 814 (1092)
.....++++++|+.+++-..++.|..|+.... ...... ....+..++++++|
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-----------------------~~~~~~-----~~~~p~gia~~~dG 83 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-----------------------QQIHAT-----VEGKVSGLAFTSNG 83 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-----------------------EEEEEE-----CSSEEEEEEECTTS
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-----------------------eEEEEe-----CCCCceeEEEcCCC
Confidence 35678899999986666556777776653211 011111 12357789999999
Q ss_pred CEEEEEeC-C--eEEEEEcCCceeeEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee-eEee-------
Q 001358 815 AYLFSASG-G--VISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKL------- 882 (1092)
Q Consensus 815 ~~l~~~sd-g--~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~~~l------- 882 (1092)
+++++... + .|..+|..+++....... .......++..+ ++..+++-..++.|+++|..+++. +...
T Consensus 84 ~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~ 162 (306)
T 2p4o_A 84 DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS 162 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred cEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccc
Confidence 97665543 2 476777777765433221 222345566666 565555555688999999876531 1100
Q ss_pred --ccccCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCC-CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCC
Q 001358 883 --EGHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 957 (1092)
Q Consensus 883 --~~h~~~V~~l~~spdg~~l~-s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~ 957 (1092)
.+.-.....+ +||++.|. +-...+.|..++++. ++......+... .....+++.++|++.++ ...+
T Consensus 163 ~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-------~~P~gi~vd~dG~l~va~~~~~ 233 (306)
T 2p4o_A 163 NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-------TNIDDFAFDVEGNLYGATHIYN 233 (306)
T ss_dssp STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-------CCCSSEEEBTTCCEEEECBTTC
T ss_pred cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-------CCCCCeEECCCCCEEEEeCCCC
Confidence 1111234455 78887654 445678899999875 332222222221 13457999999988777 4567
Q ss_pred cEEEEEcCCceeeee-eccCCCcCEEEEEEe---cCCCEEEEEeCCC
Q 001358 958 HLAIYEAEELTCLKQ-WFPISSVPISQATFS---CDCRMVFTSFVDG 1000 (1092)
Q Consensus 958 ~v~lwd~~~~~~~~~-~~~~h~~~v~~l~fs---~dg~~l~t~s~Dg 1000 (1092)
.|.++|.. ++.... .........++++|. +|++.|+.++..+
T Consensus 234 ~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 234 SVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred eEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 89999975 554221 122223568999999 8988777766543
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.35 E-value=0.0012 Score=71.02 Aligned_cols=238 Identities=10% Similarity=-0.039 Sum_probs=145.6
Q ss_pred EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC---CceeEE-EecCC
Q 001358 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTYS-FEGHG 485 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---~~~~~~-~~~~~ 485 (1092)
+|+.+.. ..|+..|+.+++... .+ ........++|.+++.. ++++-...+.|..+++.+ +..... +....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 4444444 348888988765332 22 23445789999987664 555666678999999876 222222 32222
Q ss_pred cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+... ..+.|+..++...
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG~ 153 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 153 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCCC
Confidence 34567777432 34566666778899999987654444443344567899999977777665431 1357888887543
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
....+.... ......+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 154 -~~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 154 -DIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp -CEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred -CeEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 333332211 25678999999887777655 5678999998754433333322222234577775 456666666678
Q ss_pred eEEEEECCCCCeeeec
Q 001358 645 RIKILETPESNSVDAA 660 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~ 660 (1092)
.|..++..+++....+
T Consensus 230 ~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 230 AIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred eEEEEeCCCCcceEEE
Confidence 8999987766554443
No 278
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.35 E-value=7.6e-05 Score=74.70 Aligned_cols=187 Identities=10% Similarity=0.039 Sum_probs=125.4
Q ss_pred CCCeeEEEEecCCCEEEEEe-C--CeEEEEEcCCceeeEEecCCCCC-eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001358 802 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~s-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1092)
..-...+.|++ +.++.+.+ + +.|+.+|+.+++.+..+.-.... --.+++. ++++......++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34456888986 45555444 2 47999999999999887644332 2345554 45566666778999999999999
Q ss_pred eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eC
Q 001358 878 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 956 (1092)
Q Consensus 878 ~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d 956 (1092)
.+.++..-.. -..+ ++|++.|+.+..++.|.++|..+.+......+....... ..+..+.+. +|+..+.. ..
T Consensus 97 ~~~ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~---~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL---DNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc---ccceeeEEe-CCEEEEEECCC
Confidence 9998874322 2344 467777777777889999999987655433332211111 134556655 67655554 56
Q ss_pred CcEEEEEcCCceeeeeeccC------------CCcCEEEEEEecCCCEEEEEeC
Q 001358 957 THLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 957 ~~v~lwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~s~ 998 (1092)
+.|.+.|..+|+.+..+-.+ -..-...++++|+++.|++.+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 78999999999988765422 1235688999998877776654
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.34 E-value=0.00062 Score=75.44 Aligned_cols=249 Identities=11% Similarity=-0.005 Sum_probs=155.2
Q ss_pred CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
+.-.|.+..+.+ +++++ ....|+..++.++..... . .....+..++|.+.+..|..+
T Consensus 77 d~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~~-------------------~-~~~~~~~gl~~d~~~~~ly~~ 133 (386)
T 3v65_B 77 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------L-NNLENAIALDFHHRRELVFWS 133 (386)
T ss_dssp TSSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEEE-------------------E-CSCSCEEEEEEETTTTEEEEE
T ss_pred CCCeECCccccc-eeEee--cCccceeeccCCCcEEEE-------------------e-cCCCccEEEEEecCCCeEEEE
Confidence 345677777754 34443 236788888876654321 1 233468899999866666555
Q ss_pred -eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEee
Q 001358 415 -YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1092)
Q Consensus 415 -~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 493 (1092)
...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.+++.......+.........+++
T Consensus 134 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giav 209 (386)
T 3v65_B 134 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 209 (386)
T ss_dssp ETTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEE
T ss_pred eCCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEE
Confidence 456789999988754211 12222234567899886664 4556666778999887655433333333455678888
Q ss_pred cccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001358 494 HAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1092)
.+. ++.++++-... +.|...+++...........-.....++++|++..|+.+-. ..+.|..+|.........+.
T Consensus 210 dp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~ 285 (386)
T 3v65_B 210 HPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 285 (386)
T ss_dssp ETT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEEC
T ss_pred EcC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEE
Confidence 643 33445554444 77888888765554444444446789999998888877643 25679999986543333332
Q ss_pred eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001358 573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
... .....+++ ..+..+++-...+.|..++..+|+....+..
T Consensus 286 ~~~---~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 286 QGL---PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SSC---SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCC---CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 222 45677777 3344455555778888888777777666653
No 280
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.33 E-value=0.017 Score=70.67 Aligned_cols=525 Identities=11% Similarity=0.039 Sum_probs=272.5
Q ss_pred CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|.++....+|.. -.|+.+ -+..+|..++..... .......|.++.. .+| .|..+
T Consensus 63 ~~i~~i~~d~~g~l--WigT~~-Gl~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWig 118 (758)
T 3ott_A 63 TRIYCGVIIDNTYL--YMGTDN-GILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWLG 118 (758)
T ss_dssp SCEEEEEEETTTEE--EEEETT-EEEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEEE
T ss_pred ceEEEEEEcCCCcE--EEEeCC-CeEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEEE
Confidence 46888888888863 334444 478899877532110 0112235777765 355 55556
Q ss_pred eCCCEEEEEEccCCCCccceEEec-----ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC-----
Q 001358 415 YSKHIVQLYAYHGGSDARQQLEID-----AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH----- 484 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~-----~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~----- 484 (1092)
+.+| +..+|..+++.. .+. .....|.++....+|. +. .|+.+ -+..+|..+++... +...
T Consensus 119 t~~G-l~~~~~~~~~~~----~~~~~~~~l~~~~i~~i~~d~~g~--lW-igt~~-Gl~~~~~~~~~~~~-~~~~~~~~~ 188 (758)
T 3ott_A 119 ALNG-LYTYQLQSRKLT----SFDTRRNGLPNNTIYSIIRTKDNQ--IY-VGTYN-GLCRYIPSNGKFEG-IPLPVHSSQ 188 (758)
T ss_dssp ETTE-EEEEETTTCCEE----EECHHHHCCSCSCEEEEEECTTCC--EE-EEETT-EEEEEETTTTEEEE-ECCCCCTTC
T ss_pred cCCc-ceeEeCCCCeEE----EeccCCCCcCCCeEEEEEEcCCCC--EE-EEeCC-CHhhCccCCCceEE-ecCCCcccc
Confidence 6664 888998765421 121 1134588888887777 33 34444 47788877765432 2111
Q ss_pred -CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358 485 -GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 485 -~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
...|.++.. +.++..|..|+. +-+..++..+.............|.++....+|...+.. . . -+.+++..
T Consensus 189 ~~~~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~----~-Gl~~~~~~ 259 (758)
T 3ott_A 189 SNLFVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D----N-GLYVYHND 259 (758)
T ss_dssp SSCCEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T----T-EEEEECCT
T ss_pred ccceeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C----C-ceeEEecC
Confidence 123666655 334444555554 457778766543322111123457788887788766654 2 1 27888887
Q ss_pred CCeEEEEEee----ccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe-----CCCCCCCCceEEEccCC
Q 001358 564 EGAIKRTYQG----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-----AGGGLPENPRICFNKNG 634 (1092)
Q Consensus 564 ~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~v~~s~~~ 634 (1092)
++........ .......|.++....++. |-.|+..| +.++.... . ..... .......|.++.-..+|
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~-~-~~~~~~~~~~~~~~~~~v~~i~~D~~g 335 (758)
T 3ott_A 260 TTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS-A-LQFIPISQITGTGDGNQFYSLFRDSKG 335 (758)
T ss_dssp TSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTC
T ss_pred CCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC-c-eeEEecccCCCCCCCceEEEEEEcCCC
Confidence 7654322211 111235688888887765 55566666 54443322 1 11111 00111246667766667
Q ss_pred CEEEEEeCCCeEEEEECCCCCe--eeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccce
Q 001358 635 TLLAVIANENRIKILETPESNS--VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~ 712 (1092)
.+.+ |+.+ -+..++..++.. +....
T Consensus 336 ~lWi-Gt~~-Gl~~~~~~~~~~~~~~~~~--------------------------------------------------- 362 (758)
T 3ott_A 336 FYWF-GGAN-GLIRFTDPAGERHDAIWYR--------------------------------------------------- 362 (758)
T ss_dssp CEEE-EETT-EEEEESCTTSSCCCCEEEC---------------------------------------------------
T ss_pred CEEE-eeCC-cceeecccccccceeEEec---------------------------------------------------
Confidence 6444 4554 455555443210 00000
Q ss_pred eceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCcee
Q 001358 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 792 (1092)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1092)
.. .. +.......|.++....+|...+.+ . +-+..|+...... ..+..
T Consensus 363 --~~--~~--------~~~l~~~~v~~i~~d~~g~lWigt-~-~GL~~~~~~~~~~------------~~~~~------- 409 (758)
T 3ott_A 363 --MG--DK--------TYPLSHNRIRHIYEDKEQQLWIAT-D-GSINRYDYATRQF------------IHYNI------- 409 (758)
T ss_dssp --TT--CS--------SSCCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEE------------EEEEE-------
T ss_pred --cC--Cc--------CCCCCCCceEEEEECCCCCEEEEe-C-CcHhhcCcCCCcE------------EEeec-------
Confidence 00 00 000022457777777778755543 3 4455555332211 00000
Q ss_pred eecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCc-----eee---EEec---C-CCCCeEEEEEcCCCCCEEE
Q 001358 793 VNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTF-----KTI---LTIM---P-PSPTATSLAFNPHDNNVIA 860 (1092)
Q Consensus 793 ~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~-----~~~---~~~~---~-~~~~i~~l~~s~~d~~~la 860 (1092)
...........|.++...++|.+.+...++-+.++|..+. ... ..+. + ....|.++...+ ++.+.+
T Consensus 410 -~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi 487 (758)
T 3ott_A 410 -VDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWV 487 (758)
T ss_dssp -ECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEE
T ss_pred -CCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEE
Confidence 0000000234578888888887666554667888886531 111 1111 1 223588999988 777665
Q ss_pred EEeCCCeEEEEEcCCceeeEeecc---ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCC
Q 001358 861 IGMDDSTILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 937 (1092)
Q Consensus 861 sg~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 937 (1092)
.++..+-+..+|..+++....... ....+.++....+|.+.+. +..| |..++..++.... .. ..+.. ..
T Consensus 488 ~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~---~~-~~gl~--~~ 559 (758)
T 3ott_A 488 LLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQS---IS-FGSFS--NN 559 (758)
T ss_dssp EETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCB---CC-CCC-----C
T ss_pred EccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEE---ec-ccCCC--cc
Confidence 344445588899887764432211 1346888888888877764 4555 8888877654222 11 11111 13
Q ss_pred CceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEe-cCCCEEEEEeCCCcEEEEECC
Q 001358 938 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 938 ~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
.|.++... +|.+.+++ ++.+..+|..+.+...--.. ...+....+. +||. |..|+.+|-+ .++..
T Consensus 560 ~i~~i~~~-~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~-l~fG~~~Gl~-~f~p~ 625 (758)
T 3ott_A 560 EILSMTCV-KNSIWVST-TNGLWIIDRKTMDARQQNMT--NKRFTSLLFDPKEDC-VYLGGADGFG-ISHSN 625 (758)
T ss_dssp CEEEEEEE-TTEEEEEE-SSCEEEEETTTCCEEEC--C--CCCCSEEEEETTTTE-EEEECBSEEE-EEEC-
T ss_pred ceEEEEEC-CCCEEEEC-CCCeEEEcCCCceeEEecCC--CCceeeeEEECCCCc-EEEecCCceE-EEChh
Confidence 57777764 66555444 55688889887654321111 1223334444 4665 5557777754 44543
No 281
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.31 E-value=0.0011 Score=72.14 Aligned_cols=249 Identities=10% Similarity=-0.032 Sum_probs=154.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001358 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
...+|.+..++ .+|+.+.. ..|+..++.+.... .+.........++|.+.+.. ++++-...+.|..+++..+.
T Consensus 34 d~~~C~~~~~~-~~ll~~~~-~~I~~i~~~g~~~~----~~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 34 DRRSCKALGPE-PVLLFANR-IDIRQVLPHRSEYT----LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TSSCEEESSSC-CEEEEECB-SCEEEECTTSCCEE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCS
T ss_pred CCCcccccccC-ceeEeecc-cceEEEeCCCCeeE----EeecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCC
Confidence 34456666663 34544433 34888887764321 12223345789999987664 45555667889999987765
Q ss_pred eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCcee
Q 001358 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1092)
Q Consensus 477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1092)
....+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+...... ...
T Consensus 107 ~~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~ 183 (349)
T 3v64_C 107 VEEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPR 183 (349)
T ss_dssp CEEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCE
T ss_pred ceEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCE
Confidence 44433333334566777543 345666667778999999886655544444445678999999777777654311 367
Q ss_pred EEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC
Q 001358 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1092)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1092)
|+..++...... .+.... ......++++|++..|+.+. ..+.|..+++........+... ......+++ .++.
T Consensus 184 I~r~~~dG~~~~-~~~~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ 257 (349)
T 3v64_C 184 IEASSMDGSGRR-IIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDS 257 (349)
T ss_dssp EEEEETTSCSCE-ESCCSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTE
T ss_pred EEEEeCCCCCcE-EEEECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCE
Confidence 888887654332 222111 24578999998877776654 5678999998754443333322 223467777 4455
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeecc
Q 001358 636 LLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 636 ~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
++++-...+.|..++..+++....+.
T Consensus 258 ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 258 LYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEecCCCCeEEEEEccCCCccEEec
Confidence 66666667888888866665554443
No 282
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.31 E-value=0.00077 Score=74.69 Aligned_cols=246 Identities=11% Similarity=-0.038 Sum_probs=153.7
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
.|.+..+ ..+|+.+.. ..|+..++.++.... +.........++|.+.+.. ++++-...+.|..+++..+....
T Consensus 80 ~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 80 SCKALGP-EPVLLFANR-IDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp CEEECSS-CCEEEEECB-SCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEEE
T ss_pred eECCccc-cceeEeecC-ccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcEE
Confidence 3555555 345554433 458888887754322 2223345789999987664 45566677889999987765444
Q ss_pred EEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..-.. ....|+.
T Consensus 153 ~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~r 229 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIEA 229 (386)
T ss_dssp EECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEEE
T ss_pred EEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEEE
Confidence 33323334456676533 34566666677889988887655444444444567899999988877766431 1367888
Q ss_pred EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001358 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
.++............ ......++++|++..|+.+. ..+.|..+++........+... ......+++ .++.+++
T Consensus 230 ~~~dG~~~~~~~~~~---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 230 SSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYW 303 (386)
T ss_dssp EETTSCSCEEEECSS---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEE
T ss_pred EeCCCCCcEEEEECC---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEE
Confidence 887654333322221 24578999998777776654 5678999998754443333322 223467777 4456666
Q ss_pred EEeCCCeEEEEECCCCCeeeecc
Q 001358 639 VIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
+-...+.|..++..+++....+.
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEE
T ss_pred eeCCCCeEEEEECCCCcceEEEc
Confidence 66677888888866665555544
No 283
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.26 E-value=0.0019 Score=69.28 Aligned_cols=232 Identities=9% Similarity=-0.062 Sum_probs=140.3
Q ss_pred CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE-eCCCEEEEEEccCC---CCcc
Q 001358 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGG---SDAR 432 (1092)
Q Consensus 357 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~---~~~~ 432 (1092)
..|+..|+.+++.... + .....+..++|++++..|..+ ...+.|..+++.+. ....
T Consensus 10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence 6789999887764431 1 134567899999977666655 45688999998762 2122
Q ss_pred ceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecC-CeE
Q 001358 433 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKI 511 (1092)
Q Consensus 433 ~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~i 511 (1092)
. .+...-.....+++.+.+.. ++++-...+.|.+.|.+.......+.........+++.+. ++.++++.... +.|
T Consensus 70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI 145 (316)
T ss_dssp E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence 1 12222235678999876654 4556667889999997754433333333455678888543 33444444333 678
Q ss_pred EEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001358 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1092)
...+++...........-.....+++++++..|+.+-. ..+.|..+|...... +.+............+++. .+.
T Consensus 146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ 220 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDK 220 (316)
T ss_dssp EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTE
T ss_pred EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCE
Confidence 88887654433333333456789999999888877643 256799999874333 3332211012345677774 344
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEe
Q 001358 592 QILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
.+++-...+.|..++..+++.+..+.
T Consensus 221 ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEECCCCeEEEEeCCCCcceEEEe
Confidence 44455567788888887776655553
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.26 E-value=0.00018 Score=87.60 Aligned_cols=246 Identities=6% Similarity=-0.055 Sum_probs=133.6
Q ss_pred CCCC-cEEEEEEC-CCCCEEEEEeC-C----CEEEEEEccCC-CCccceEEecccccceeEEEeeCCCCcEEEEEEeCC-
Q 001358 394 DPGV-SVNRVVWS-PDGSLLGVAYS-K----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD- 464 (1092)
Q Consensus 394 ~h~~-~V~~l~~s-pdg~~las~~~-d----~~i~iwd~~~~-~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d- 464 (1092)
+|.. .+...+|| |||++||.+.. + .+|+++|+.+| +.+.. .+. .....++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---~~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---GTNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---EECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---CceeeEEEecCCCE--EEEEEECC
Confidence 3443 78899999 99999997643 2 35999999998 64321 111 12457899999985 3333333
Q ss_pred ----CcEEEEECCCCce--eEEEec-CCcceEEEeecccCCccEEEEEec---CCeEEEEEcCCCC-ce--EEe-cCCCC
Q 001358 465 ----KTIKVWDAVTGSR--TYSFEG-HGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLG-AR--VDY-DAPGL 530 (1092)
Q Consensus 465 ----~~i~vwd~~~~~~--~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~-~~--~~~-~~~~~ 530 (1092)
..|.++++.++.. ...+.. .......+.+ ++||++|+..+. ...|.++|+.+.. .. ..+ .....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 3688889887753 223322 2233445556 567777776553 3357888887653 22 223 22333
Q ss_pred ceEEEEEecCCCEEEEEecCC-CCceeEEEEeCCCCeEEEE-EeeccccCCceEEEEEcCCCCEE-EEEeCCCe--EEEE
Q 001358 531 GCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHV--IKIW 605 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~--i~iw 605 (1092)
...++.|+ +|+.|+..+... .+...|+.+|..++..... +..+. ....+..+.+. ++.+ ++...++. |+++
T Consensus 321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR--SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 44444443 366666555432 3466788899875322222 22222 01234555554 4444 55666775 4555
Q ss_pred EC-------CCCceEEEEeCCCCCCCCceEEE------ccCCCE-EEEEeCC---CeEEEEECCCCC
Q 001358 606 DM-------NKVQLLTTIDAGGGLPENPRICF------NKNGTL-LAVIANE---NRIKILETPESN 655 (1092)
Q Consensus 606 d~-------~~~~~~~~~~~~~~~~~v~~v~~------s~~~~~-l~~~~~d---g~i~iw~~~~~~ 655 (1092)
++ .+++....+..... ...+.+ ++++.. +++.+.. +.+..+++.+++
T Consensus 397 dl~~~~~~~~~g~~~~~l~l~~~---~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 397 MADSQDGVFKAGTGLREVVMEEP---IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp ECCTTTSCCCTTTCCEECCCCCS---SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred ecccccccccCCccceEECCCCc---eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 65 34441344433221 223344 345543 3333332 456667766553
No 285
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.26 E-value=0.001 Score=67.64 Aligned_cols=217 Identities=12% Similarity=0.122 Sum_probs=134.4
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001358 838 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916 (1092)
Q Consensus 838 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~ 916 (1092)
.+.+-...+..++++|+++.+.++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4555556899999999555666678889999999998 887777642 22568889999999877776677889999987
Q ss_pred CCce-eeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe-CCcEEEEEcCC---ceeeeee------ccCCCcCEEEEE
Q 001358 917 GWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEE---LTCLKQW------FPISSVPISQAT 985 (1092)
Q Consensus 917 ~~~~-~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-d~~v~lwd~~~---~~~~~~~------~~~h~~~v~~l~ 985 (1092)
.... ..........+..........++++|+++.|.++. .....||.+.. ...+... ...+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 6542 11122221111111223578999999997777643 33445555431 1111111 011344678999
Q ss_pred EecCC-CEEEEEeCCCcEEEEECCCCceEEeecccc-ccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001358 986 FSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTA-YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 986 fs~dg-~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
|.|.. ++++.......+.++|.. |+.+..+.... .... ....-.+--++++| +++ |...+.-+.++++.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l--~~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGL--SHNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGC--SSCCCSEEEEEECT-TCC-EEEEETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCc--ccccCCCCeeEECC-CCC-EEEEcCCceEEEEEe
Confidence 99854 555666666788899976 55665555332 1000 01112346789999 466 445577776666654
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.22 E-value=0.0023 Score=71.12 Aligned_cols=240 Identities=10% Similarity=-0.028 Sum_probs=150.6
Q ss_pred EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC----ceeEEEecCC
Q 001358 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 485 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~ 485 (1092)
+|+.+. ...|+..++.+..... +......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 455443 4568888888754322 2234556889999987664 4555556788999998752 2223333234
Q ss_pred cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.....+++.+. ++.+.++-...+.|.+.+++.......+.........+++.|.+.+|+..-.. ....|+..++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence 45667777543 34566666778899999988665555554444567899999977777665421 1356888887654
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
......... -.....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 236 ~~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 236 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp SCEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred ccEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 433333322 25678999999888887765 5678999998765544444432222334566663 345556666678
Q ss_pred eEEEEECCCCCeeeeccc
Q 001358 645 RIKILETPESNSVDAAGV 662 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~ 662 (1092)
.|..++..+++....+..
T Consensus 312 ~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 312 AIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp SEEEEESSSCCCCEEEEC
T ss_pred eEEEEEcCCCCceEEEec
Confidence 888888777765555543
No 287
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.15 E-value=0.0043 Score=66.86 Aligned_cols=281 Identities=12% Similarity=0.033 Sum_probs=148.2
Q ss_pred CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..+.+|.|.+++. ++++|. .+.| +...+.|+.=...... .......+.+++|++ +..++ +
T Consensus 36 ~~~~~v~~~~~~~-~~~~G~-~g~i-~~s~DgG~tW~~~~~~---------------~~~~~~~~~~i~~~~-~~~~~-~ 95 (327)
T 2xbg_A 36 ATILDMSFIDRHH-GWLVGV-NATL-METRDGGQTWEPRTLV---------------LDHSDYRFNSVSFQG-NEGWI-V 95 (327)
T ss_dssp SCEEEEEESSSSC-EEEEET-TTEE-EEESSTTSSCEECCCC---------------CSCCCCEEEEEEEET-TEEEE-E
T ss_pred CcEEEEEECCCCc-EEEEcC-CCeE-EEeCCCCCCCeECCCC---------------CCCCCccEEEEEecC-CeEEE-E
Confidence 4799999988887 566654 4543 3333444321110000 112345788999986 44444 4
Q ss_pred eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE-EecCCcceEEEee
Q 001358 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCP 493 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~i~~ 493 (1092)
+..+.|.. ....|+..........+.+.+..+.+.+++. +++.+ .++.|.. ..+.|+.-.. ...+...+..+++
T Consensus 96 g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 96 GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEE
T ss_pred ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEE
Confidence 45664433 3444544332211112345577888877776 45544 4665433 2233433222 2344556778877
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001358 494 HAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1092)
.+ ++.+++.+...+..+-+|-. +.. ..........+..+++.++++.++.+. .+.+++.+...|+....+.
T Consensus 171 ~~--~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~ 242 (327)
T 2xbg_A 171 SP--SGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELL 242 (327)
T ss_dssp CT--TSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCB
T ss_pred cC--CCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEecc
Confidence 54 55666655443333333321 111 111123345788899999988766542 3446665433344333332
Q ss_pred ec-cccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-CCCCCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001358 573 GL-QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1092)
Q Consensus 573 ~~-~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 650 (1092)
.. ......+..+.+.+++..+++ +.+|.+ .+..+.|+.-..+... .....+..+.|.+++. +++++.+|.|.-++
T Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 243 SPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp CTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred CCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 21 001235888999887665554 456766 4555556554444421 1123578898876554 66667788777665
Q ss_pred C
Q 001358 651 T 651 (1092)
Q Consensus 651 ~ 651 (1092)
-
T Consensus 320 ~ 320 (327)
T 2xbg_A 320 T 320 (327)
T ss_dssp C
T ss_pred C
Confidence 3
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.14 E-value=0.0005 Score=77.30 Aligned_cols=248 Identities=11% Similarity=0.047 Sum_probs=143.5
Q ss_pred CeeEEEEecC--CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC---C-eEEEEEcCCc
Q 001358 804 AVPCFALSKN--DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARSS 876 (1092)
Q Consensus 804 ~v~~~~~s~d--g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g-~v~iwd~~~~ 876 (1092)
....++++|+ +..|.++. .+.|+.+|..++..... .........+++++ +++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999984 44454454 48899999987766544 33556789999999 77754443321 1 2333333222
Q ss_pred eee-EeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE
Q 001358 877 EVI-SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954 (1092)
Q Consensus 877 ~~~-~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~ 954 (1092)
... ..+. .......+++.| +|.++++-..++.|+.++..++.... ........ .....++|+|+|+.|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~~-----~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDTK-----GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSCC-----SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCCC-----CCcccEEEeCCCCEEEEE
Confidence 110 1111 233456688999 67777666677889999988665411 11111111 124579999999966664
Q ss_pred --eCCcEEEEEcC--Cceee--eeecc-----C---------CCcCEEEEEE---------ecCCCEEEEEeCCCcEEEE
Q 001358 955 --HETHLAIYEAE--ELTCL--KQWFP-----I---------SSVPISQATF---------SCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 955 --~d~~v~lwd~~--~~~~~--~~~~~-----~---------h~~~v~~l~f---------s~dg~~l~t~s~Dg~i~vw 1005 (1092)
..+.|..++.. ++... ..+.. + .-.....+++ .++|.++++-...++|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 45679888765 23211 11110 0 1124677999 7778777777777889999
Q ss_pred ECCCCceEEeecccc-----ccCC-CC-ccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358 1006 EASNLEVQCRILSTA-----YLRP-TT-SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1006 d~~~~~~~~~~~~~~-----~~~~-~~-~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
+. +|.......... +... .. ...--.|..++++|.++.++++=...+.|+.+++.
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 564432221100 0000 00 00112467899995456666666667788888763
No 289
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.14 E-value=0.00053 Score=77.11 Aligned_cols=246 Identities=12% Similarity=0.040 Sum_probs=142.0
Q ss_pred CeeEEEEec-CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeC-CC----eEEEEEcCCc
Q 001358 804 AVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS----TILIYNARSS 876 (1092)
Q Consensus 804 ~v~~~~~s~-dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg----~v~iwd~~~~ 876 (1092)
....++++| ++..|.++. .+.|+.+|..++...... ........++|++ ++++|+++.. ++ .+.+++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 456889998 455565555 478999999876654433 3456688999999 7885555554 22 3444443 33
Q ss_pred eee--EeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001358 877 EVI--SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 877 ~~~--~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
... ..+. .......++++| +|.++++-..++.|..++..++.... ....... .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 222 2222 123456789999 67777776678889999998754321 1222111 24678999999996665
Q ss_pred E--eCCcEEEEEcCC--cee--eeeecc-----C---------CCcCEE-EEEEe--------cCCCEEEEEeCCCcEEE
Q 001358 954 V--HETHLAIYEAEE--LTC--LKQWFP-----I---------SSVPIS-QATFS--------CDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus 954 ~--~d~~v~lwd~~~--~~~--~~~~~~-----~---------h~~~v~-~l~fs--------~dg~~l~t~s~Dg~i~v 1004 (1092)
+ ..+.|..++... +.. +..+.. + .-.... .++.. ++|.++++-...++|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 557888887653 221 111110 0 011233 45553 34666666566678998
Q ss_pred EECCCCceEEeecccc--ccC--CC--Ccc-CcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358 1005 HEASNLEVQCRILSTA--YLR--PT--TSC-LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1005 wd~~~~~~~~~~~~~~--~~~--~~--~~~-~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
++ .+|.......... ... .+ ... .--.|..++++|+++.++++-...+.|+.+++.
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88 4565443332100 000 00 000 112577899998545566665566788887763
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.01 E-value=0.0087 Score=66.41 Aligned_cols=250 Identities=8% Similarity=-0.061 Sum_probs=149.9
Q ss_pred eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe-C
Q 001358 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-S 416 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~ 416 (1092)
.|.+..+.. +++.+. ...|+..++.+..... +...-..+..++|++.+..|..+. .
T Consensus 76 ~C~~~~~~~-~ll~~~--~~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~ 132 (400)
T 3p5b_L 76 ACKAVGSIA-YLFFTN--RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLS 132 (400)
T ss_dssp SCCCSTTSC-EEEEEE--TTEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETT
T ss_pred ceeeccccc-eeEEec--cceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecC
Confidence 344443333 344443 3678888888765432 122446788999999766666654 5
Q ss_pred CCEEEEEEccCCCCc-cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecc
Q 001358 417 KHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~-~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
.+.|+.+++.+.... .....+.........+++.+.+.. ++++-...+.|.+.+++.......+.........+++.+
T Consensus 133 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 211 (400)
T 3p5b_L 133 QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 211 (400)
T ss_dssp TTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEET
T ss_pred CCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEec
Confidence 678999998763210 111122223446778999885554 556666778999999876654444443445567888865
Q ss_pred cCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001358 496 KENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 496 ~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
. ++.++++-.. .+.|...+++...........-.....+++++++..|+.+-. ....|..+|.............
T Consensus 212 ~-~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~ 287 (400)
T 3p5b_L 212 V-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDE 287 (400)
T ss_dssp T-TTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCCEEEEECS
T ss_pred c-cCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCccEEEEeCC
Confidence 4 3334444323 477888888765554444444456789999999888887743 2567999998654443333321
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001358 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
. .......+++. .+..+++-...+.|..+|..+|+.+..+.
T Consensus 288 ~-~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 288 K-RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp S-TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred C-CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 1 11345566663 23344455566788888877777666654
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=0.0026 Score=71.43 Aligned_cols=239 Identities=13% Similarity=0.072 Sum_probs=135.4
Q ss_pred CceEEeecC-CCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358 336 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 336 ~V~~v~~sp-dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
....++++| ++..|.++-.. +.|+.+|..++.... +.........++|+++|++|.++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyva 196 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMIIT 196 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEEE
Confidence 568999998 34445554433 788999988765432 22244678899999999977666
Q ss_pred eCC----C-EEEEEEccCCCCccceEEecccccceeEEEeeC-CCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCcc
Q 001358 415 YSK----H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAP 487 (1092)
Q Consensus 415 ~~d----~-~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~ 487 (1092)
... . .+.+.+.. +.... ...+. .......++++| ++. ++++-..++.|..++..++........ ....
T Consensus 197 d~~~~~~~~~v~~~~~~-g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~ 271 (430)
T 3tc9_A 197 NDQNNNDRPNNYILTRE-SGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW 271 (430)
T ss_dssp ECCSCTTSEEEEEEEGG-GTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSSC
T ss_pred eCCCCcccceEEEEeCC-Cceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCCc
Confidence 542 2 34444443 33221 11222 123456788999 565 666666788999999887664322221 2234
Q ss_pred eEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCc----eEEecCC---------------CCceE-EEEEe--------
Q 001358 488 VYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCT-RMAYS-------- 538 (1092)
Q Consensus 488 v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~----~~~~~~~---------------~~~i~-~~~~s-------- 538 (1092)
...+++++ ++. ++++-...+.|..++.+.... ...+... -.... .++..
T Consensus 272 P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D 349 (430)
T 3tc9_A 272 EFHIQFHP--SGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSS 349 (430)
T ss_dssp CEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSS
T ss_pred ceeEEEcC--CCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccC
Confidence 66788854 666 555556778899988764311 1111110 00122 45553
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec---------c------ccCCceEEEEEcCC-CCEEEEEeCCCeE
Q 001358 539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------Q------LQHNSVSVVHFDTA-KDQILAAGDDHVI 602 (1092)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------~------~~~~~v~~~~~~~~-~~~l~~~s~dg~i 602 (1092)
++|...++-. +.+.|+.++. +|... .+.+. . ..-.....+++.|+ +..+++-..++.|
T Consensus 350 ~~g~lyvaD~----~n~~I~~i~~-~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rI 423 (430)
T 3tc9_A 350 DEYDFYFCDR----ENHCIRILTP-QGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRI 423 (430)
T ss_dssp CCEEEEEEEG----GGTEEEEECT-TSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEE
T ss_pred CCCeEEEEEC----CCcEEEEECC-CCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence 2344444332 2567888884 45433 33332 0 00125788999985 4444444456777
Q ss_pred EEEECC
Q 001358 603 KIWDMN 608 (1092)
Q Consensus 603 ~iwd~~ 608 (1092)
+.++++
T Consensus 424 r~i~~e 429 (430)
T 3tc9_A 424 RKIGYE 429 (430)
T ss_dssp EEEEEC
T ss_pred EEEccC
Confidence 777653
No 292
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.97 E-value=0.0019 Score=72.48 Aligned_cols=238 Identities=16% Similarity=0.090 Sum_probs=136.2
Q ss_pred CceEEeecCC---CceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358 336 SPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 336 ~V~~v~~spd---g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
....++|+|+ |. |.++-.. +.|+.+|..++.... +.+....+..++|+++|++++
T Consensus 140 ~P~gvavd~~s~~g~-Lyv~D~~-~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV 197 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDD-LYWVGQR-DAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV 197 (433)
T ss_dssp CCCEEEECTTTTTCE-EEEECBT-SCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred CCceEEEccccCCCE-EEEEeCC-CCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence 5779999995 55 4444333 889999988776543 222445689999999999444
Q ss_pred EEeCC---C-EEEEEEccCCCCccceEEecccccceeEEEeeC-CCCcEEEEEEeCCCcEEEEECCCCceeEEE-ec-CC
Q 001358 413 VAYSK---H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG-HG 485 (1092)
Q Consensus 413 s~~~d---~-~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~-~~ 485 (1092)
+.... . .+...+...+.... ..+. .-.....+++.| +|. ++++-..++.|+.+|..++.....+ .. ..
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~~~~--~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGFTER--LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTTCCE--EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred EcCCCCcccceEEEEECCCCeecc--cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 43311 2 24444443322111 1121 223456788999 666 5666667788999998878763333 21 12
Q ss_pred cceEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCc----eEEecCC---------------CCceEEEEE--------
Q 001358 486 APVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCTRMAY-------- 537 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~----~~~~~~~---------------~~~i~~~~~-------- 537 (1092)
..-..+++++ ++. +.++-...+.|+.++++.... ...+.+. -.....+++
T Consensus 273 ~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~ 350 (433)
T 4hw6_A 273 GSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAG 350 (433)
T ss_dssp SSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTT
T ss_pred CCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccc
Confidence 2234577754 556 555556678899988763211 1111110 113567888
Q ss_pred -ecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc---------------cCCceEEEEEc-CCCCEEEEEeCCC
Q 001358 538 -SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------------QHNSVSVVHFD-TAKDQILAAGDDH 600 (1092)
Q Consensus 538 -s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------------~~~~v~~~~~~-~~~~~l~~~s~dg 600 (1092)
.++|...++-. +.+.|+.++. +|.. .++.+... .-.....+++. +++..+++-..++
T Consensus 351 dd~~g~lyvaD~----~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~ 424 (433)
T 4hw6_A 351 EEDEYDFYFCDR----DSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNH 424 (433)
T ss_dssp SSCCEEEEEEET----TTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred cCCCCcEEEEEC----CCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCC
Confidence 56666555533 2567888885 5543 34433210 01346778888 4554444445666
Q ss_pred eEEEEECC
Q 001358 601 VIKIWDMN 608 (1092)
Q Consensus 601 ~i~iwd~~ 608 (1092)
.|+.++++
T Consensus 425 rIr~i~~e 432 (433)
T 4hw6_A 425 RVRKIAPE 432 (433)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecC
Confidence 77777654
No 293
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.96 E-value=0.012 Score=62.82 Aligned_cols=239 Identities=9% Similarity=-0.027 Sum_probs=146.3
Q ss_pred EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee-EEEecCCcce
Q 001358 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPV 488 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v 488 (1092)
+|+.+ ....|+..++.+....... .+. ......+++|.+.+.. ++++-...+.|..+++..+... ..+...-...
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~~~-~~~-~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENATI-VVG-GLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCCEE-EEE-EEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred EEEEE-ccCeEEEEECCCCceEEEE-Eec-CCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence 34443 3456899999876411111 122 2335678999986654 5556667788999998776422 2222222345
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001358 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
..+++.+. ++.+.++-...+.|.+++++.................+++.|.+..|+..... ....|+..++.....
T Consensus 82 ~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~~- 157 (318)
T 3sov_A 82 DGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSR- 157 (318)
T ss_dssp CEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCSC-
T ss_pred cEEEEEcC-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCCe-
Confidence 56776532 44566666677899999987655444444444567899999987777665421 245688888764332
Q ss_pred EEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001358 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
..+.... -.....+++++++..|+.+. ..+.|..+|+........... .......+++.. +.++.+-...+.|.
T Consensus 158 ~~~~~~~--l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~ 232 (318)
T 3sov_A 158 FIIINSE--IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSIL 232 (318)
T ss_dssp EEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred EEEEECC--CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEE
Confidence 2222111 24578999999877776654 678899999875443333321 123346677753 45555656678899
Q ss_pred EEECCCCCeeeecc
Q 001358 648 ILETPESNSVDAAG 661 (1092)
Q Consensus 648 iw~~~~~~~~~~~~ 661 (1092)
.++..+++....+.
T Consensus 233 ~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 233 ACNKYTGEGLREIH 246 (318)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEECCCCCceEEEe
Confidence 99887776544443
No 294
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.89 E-value=0.012 Score=70.79 Aligned_cols=238 Identities=10% Similarity=-0.025 Sum_probs=146.7
Q ss_pred EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC----ceeEEEecCC
Q 001358 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 485 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~ 485 (1092)
+|+.+. ...|+..++...... .+......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred cccccc-ccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 444443 344788888765422 22234456789999986664 5556666788999998753 2223333234
Q ss_pred cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.....|++.+. .+.++++-...+.|.+.+++.......+.........|++.|.+.+|+..-.. ....|...++...
T Consensus 471 ~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeec-CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 45667777543 33566677778899999998665555444444568899999987777765421 1256888888655
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
.....+... ......|++.+.+..|+.+. ..+.|...++........+...........+++.. +.++++-...+
T Consensus 548 ~~~~lv~~~---l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~ 623 (791)
T 3m0c_C 548 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINE 623 (791)
T ss_dssp CEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTT
T ss_pred ceEEEEeCC---CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCC
Confidence 443333322 25688999998877777764 56789999987665555554333223334566532 34444445567
Q ss_pred eEEEEECCCCCeeeec
Q 001358 645 RIKILETPESNSVDAA 660 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~ 660 (1092)
.|...+..++..+..+
T Consensus 624 ~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 624 AIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred EEEEEeCCCCcceEEe
Confidence 8888887766554444
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.89 E-value=0.01 Score=63.42 Aligned_cols=233 Identities=12% Similarity=0.005 Sum_probs=141.5
Q ss_pred cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE-eCCCEEEEEEccCCCCccce
Q 001358 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQ 434 (1092)
Q Consensus 356 d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~~~~~~~ 434 (1092)
...|+..++.+........ .. ....+..++|.+.+..|..+ ...+.|..++..++.....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~-----------------~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIV-----------------VG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCEEE-----------------EE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred cCeEEEEECCCCceEEEEE-----------------ec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence 3678999988764221100 11 12356789999965555554 4567899999887642221
Q ss_pred EEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe--cCCeEE
Q 001358 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIK 512 (1092)
Q Consensus 435 ~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~--~dg~i~ 512 (1092)
.+...-.....+++.+.+.. ++++-...+.|.+++++.......+.........+++.+. ++ .|+.+. ..+.|.
T Consensus 73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~-~g-~ly~td~~~~~~I~ 148 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS-SG-FMYWTDWGEVPKIE 148 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG-GT-EEEEEECSSSCEEE
T ss_pred -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC-CC-EEEEEecCCCCEEE
Confidence 12222235678999876554 5556666789999997654333333334455678888653 23 444443 357788
Q ss_pred EEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCE
Q 001358 513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 592 (1092)
Q Consensus 513 vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 592 (1092)
..+++...........-.....+++++++..|+.+-. ..+.|..+|...........+.. .....+++.. +..
T Consensus 149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P~glav~~-~~l 221 (318)
T 3sov_A 149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFE-DIL 221 (318)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC---SCEEEEEEET-TEE
T ss_pred EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC---CCceEEEEeC-CEE
Confidence 8887754444333333446689999998888877643 35679999986543322222222 4556777753 334
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEeC
Q 001358 593 ILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
+.+-...+.|..++..+|+....+..
T Consensus 222 ywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEEecCCCeEEEEECCCCCceEEEeC
Confidence 44555678888899877776665543
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.83 E-value=0.0071 Score=63.76 Aligned_cols=197 Identities=12% Similarity=0.157 Sum_probs=125.6
Q ss_pred CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC---CCC---EEEEEeC---CCeEEEEEcC--CceeeEe
Q 001358 814 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH---DNN---VIAIGMD---DSTILIYNAR--SSEVISK 881 (1092)
Q Consensus 814 g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~---d~~---~lasg~~---dg~v~iwd~~--~~~~~~~ 881 (1092)
..+++... .+.+.+||+ +|+.++.+.. +.+..+.+-|. +++ ++++... +++|.+|++. +++ +..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 34444333 578999999 8888888853 56777766651 111 2333333 5799999773 333 444
Q ss_pred ecc------cc-CCeEEEEE--cCC-CC-EEEEEeCCCcEEEEEcCC---CceeeeeeeecCCCCcCCCCCceEEEEecC
Q 001358 882 LEG------HS-KRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 882 l~~------h~-~~V~~l~~--spd-g~-~l~s~s~Dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 947 (1092)
+.. .. ..+..+++ +|. ++ +++....+|.+..|++.. +.. ..+.++.+.-. +.+..++..+.
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~-~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI-SGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE-EEEEEEEEECS----SCEEEEEEETT
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc-cceEEEEecCC----CCcceEEEcCC
Confidence 421 11 56677888 775 44 577788899999999843 222 23334433222 25889999999
Q ss_pred CCEEEEEeCC-cEEEEEcC-----CceeeeeeccCC-CcCEEEEEE--ecCCC-EEEEEe-CCCcEEEEECC-CCceEEe
Q 001358 948 QTRFLLVHET-HLAIYEAE-----ELTCLKQWFPIS-SVPISQATF--SCDCR-MVFTSF-VDGTLSIHEAS-NLEVQCR 1015 (1092)
Q Consensus 948 g~~la~~~d~-~v~lwd~~-----~~~~~~~~~~~h-~~~v~~l~f--s~dg~-~l~t~s-~Dg~i~vwd~~-~~~~~~~ 1015 (1092)
...|.++.+. .|..|+.+ +++.+..+-.++ ...+..|++ .++|+ ||++++ .+.+..+||.. +.+.+.+
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 8888887554 45556644 344554432333 347888887 56666 666666 56799999997 7888888
Q ss_pred eccc
Q 001358 1016 ILST 1019 (1092)
Q Consensus 1016 ~~~~ 1019 (1092)
|...
T Consensus 271 f~Ig 274 (355)
T 3amr_A 271 FRIT 274 (355)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8633
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=0.0058 Score=68.49 Aligned_cols=250 Identities=11% Similarity=0.120 Sum_probs=142.1
Q ss_pred cEEEEEECC-CCCEEEEEe-CCCEEEEEEccCCCCccceEEec-ccccceeEEEe-------eCCCCcEEEEEEeCCC--
Q 001358 398 SVNRVVWSP-DGSLLGVAY-SKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAF-------SAPCKQISVITCGDDK-- 465 (1092)
Q Consensus 398 ~V~~l~~sp-dg~~las~~-~d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~-------s~d~~~l~l~s~~~d~-- 465 (1092)
....|+|+| ++..|.++. ..+.|++.|.+++.... +.... ........++| ++++++ |+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 577899999 455555554 44678889988764322 11111 12235889999 999984 44443332
Q ss_pred -----cEEEEECCC-Ccee-----EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcC-------CCCc------
Q 001358 466 -----TIKVWDAVT-GSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------SLGA------ 521 (1092)
Q Consensus 466 -----~i~vwd~~~-~~~~-----~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-------~~~~------ 521 (1092)
.|.+.+... |... ..+.... ....+++++. ++.++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 266666443 2221 2232212 2345566442 45667777788899999987 4432
Q ss_pred -----e-EEe-cCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC--CCCeE--EEEEeecc------------ccC
Q 001358 522 -----R-VDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE--SEGAI--KRTYQGLQ------------LQH 578 (1092)
Q Consensus 522 -----~-~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~--~~~~~--~~~~~~~~------------~~~ 578 (1092)
. ..+ .........++|+|+|+.|+.+-. ..+.|+.++. .++.. ...+.+.. ..-
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 0 111 122345678999999997666532 2567888554 34432 13333321 001
Q ss_pred CceE-EEEEc-------CCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC----------------------CCCCCceE
Q 001358 579 NSVS-VVHFD-------TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG----------------------GLPENPRI 628 (1092)
Q Consensus 579 ~~v~-~~~~~-------~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~v 628 (1092)
.... .++.. +++..+++-..+..|+.++ .+|. +.++...+ .......+
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 2234 45554 4566666666788999998 4554 44443221 01224578
Q ss_pred EEccC-CCEEEEEeCCCeEEEEECCCCCee
Q 001358 629 CFNKN-GTLLAVIANENRIKILETPESNSV 657 (1092)
Q Consensus 629 ~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~ 657 (1092)
+++++ |.++++=..++.|+.+++......
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 89986 766666666788998888765433
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.78 E-value=0.026 Score=67.92 Aligned_cols=251 Identities=9% Similarity=-0.038 Sum_probs=149.1
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE-
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~- 414 (1092)
.-+|.+..+.. +|+.+ ....|+..++....... +......+..|+|.+.+..|..+
T Consensus 386 ~~~C~~~~~~p-~Ll~a--n~~~Ir~i~l~~~~~~~--------------------l~~~~~~~~gl~~d~~~~~lY~sD 442 (791)
T 3m0c_C 386 TKACKAVGSIA-YLFFT--NRHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSD 442 (791)
T ss_dssp CCCCEETTSCC-EEEEE--CBSSEEEECTTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEE
T ss_pred Cceeeeccccc-ccccc--cccceeEeeccCCccee--------------------eecCCCceEEEeecccCCeeEEee
Confidence 33455544433 23333 23567777777654332 22234567899999966655554
Q ss_pred eCCCEEEEEEccCCCCc-cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEee
Q 001358 415 YSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 493 (1092)
...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++........+.........|++
T Consensus 443 ~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaV 521 (791)
T 3m0c_C 443 LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV 521 (791)
T ss_dssp TTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEE
T ss_pred ccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEE
Confidence 45678999998753210 111123334456778999988865 5566667889999998755443334444455788888
Q ss_pred cccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001358 494 HAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1092)
.+. .+.++++-... +.|.+.+++...........-.....|++.+.+..|+.+-. +...|...++........+.
T Consensus 522 Dp~-~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~---~~~~I~~~d~dG~~~~~v~~ 597 (791)
T 3m0c_C 522 DPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILE 597 (791)
T ss_dssp ETT-TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEE
T ss_pred ecC-CCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---CCCcEEEEecCCCceEEEec
Confidence 654 23344443333 67888888765555454444457889999988888877643 25679999986554444443
Q ss_pred eccccCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceEEEEe
Q 001358 573 GLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
... ......++++. +.+|+.+ ...+.|...|..+|+.+..+.
T Consensus 598 ~~~-~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 598 DEK-RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp CTT-TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CCC-ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 321 11234556653 3355544 466778888877776665554
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=0.016 Score=64.85 Aligned_cols=253 Identities=14% Similarity=0.118 Sum_probs=142.8
Q ss_pred CceEEeecC-CCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE-------CCC
Q 001358 336 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-------SPD 407 (1092)
Q Consensus 336 ~V~~v~~sp-dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~-------spd 407 (1092)
....|+|+| ++..|+++....+.|++.|..++........ -...-.....++| +++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~----------------~~~~~~~p~~ia~~~~~~~~d~~ 203 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI----------------NTIPTNRIRSIAFNKKIEGYADE 203 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC----------------TTSSCSBEEEEEECCCBTTTBCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc----------------CccccCCCcEEEEeecccccCCC
Confidence 467899999 4554666665557788899887765432100 0112246899999 999
Q ss_pred CCEEEEEeCCC-------EEEEEEccC-CCCcc-c-eEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC----
Q 001358 408 GSLLGVAYSKH-------IVQLYAYHG-GSDAR-Q-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---- 473 (1092)
Q Consensus 408 g~~las~~~d~-------~i~iwd~~~-~~~~~-~-~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---- 473 (1092)
|++|+++...+ .|.+.+... |.... . ...+... .....++++|++.. ++++-..++.|..+|++
T Consensus 204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence 99777765543 366666444 22221 0 0122211 23457788996554 56667778889999987
Q ss_pred ---CCce-----------eEE-Ee-cCCcceEEEeecccCCccE-EEEEecCCeEEEEEcCCCCce----EEecCC---C
Q 001358 474 ---TGSR-----------TYS-FE-GHGAPVYSLCPHAKENIHF-IFSISVDGKIKAWLYDSLGAR----VDYDAP---G 529 (1092)
Q Consensus 474 ---~~~~-----------~~~-~~-~~~~~v~~i~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~----~~~~~~---~ 529 (1092)
++.. ... +. +.......++|++ ++.+ .++-+....|+.++.+..... ..+.+. .
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~ 359 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS 359 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence 5553 122 21 2234457788854 5664 555566788988776543211 111110 0
Q ss_pred ------------CceE-EEEEe-------cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc-------------
Q 001358 530 ------------LGCT-RMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL------------- 576 (1092)
Q Consensus 530 ------------~~i~-~~~~s-------~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~------------- 576 (1092)
.... .++.. ++|...++-.. ..+|+.++ .+| .+.++.+...
T Consensus 360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~----N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~ 433 (496)
T 3kya_A 360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL----NFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTD 433 (496)
T ss_dssp CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG----GTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCC
T ss_pred cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC----CCEEEEEe-CCC-CEEEEecccccccccCccccccC
Confidence 1233 45554 44554444332 66799998 455 3455544310
Q ss_pred --------cCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceEE
Q 001358 577 --------QHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLT 614 (1092)
Q Consensus 577 --------~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~ 614 (1092)
.-.....+++.++ +..+++=..+..|+.++++......
T Consensus 434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 0134567888886 5544555567778888776654443
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.73 E-value=0.0073 Score=63.70 Aligned_cols=194 Identities=12% Similarity=0.132 Sum_probs=121.1
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccC--Ccc---EEEEE-ec--CCeEEEEEcCCCC-ceEEecC
Q 001358 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE--NIH---FIFSI-SV--DGKIKAWLYDSLG-ARVDYDA 527 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~---~l~s~-~~--dg~i~vwd~~~~~-~~~~~~~ 527 (1092)
+++.....+-+.+||+ +|+.++.+.. +.++.+.+.+.- +++ ++++. -. +++|++|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4666667788999998 9999988864 456666554310 111 22333 33 5789999885322 2333321
Q ss_pred ------CC-CceEEEEE--ecC-CC-EEEEEecCCCCceeEEEEeC-------CCCeEEEEEeeccccCCceEEEEEcCC
Q 001358 528 ------PG-LGCTRMAY--SAN-GR-RLFSCGTSKEGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 528 ------~~-~~i~~~~~--s~d-g~-~l~~~~~~~~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
.. ..+..+|+ +|. ++ ++++... ++.+..|++ .+.+.++++... ..+..|...+.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence 11 45667777 674 44 3444433 456777777 234566666653 47889999999
Q ss_pred CCEEEEEeCCCeEEEEECC-----CCceEEEEeCCCCCCCCceEEE--ccCCC-EEEEEe-CCCeEEEEECC-CCCeeee
Q 001358 590 KDQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICF--NKNGT-LLAVIA-NENRIKILETP-ESNSVDA 659 (1092)
Q Consensus 590 ~~~l~~~s~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~~~-~l~~~~-~dg~i~iw~~~-~~~~~~~ 659 (1092)
..+|+.+-++..|..++.+ +++.+..+....-...+..+++ .++++ +|++.+ .+.++.+|+.. +.+.+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 9999999999877777755 3445555433222234677777 45555 666666 57899999996 4454544
Q ss_pred cc
Q 001358 660 AG 661 (1092)
Q Consensus 660 ~~ 661 (1092)
+.
T Consensus 271 f~ 272 (355)
T 3amr_A 271 FR 272 (355)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 301
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.72 E-value=0.059 Score=55.51 Aligned_cols=235 Identities=12% Similarity=0.097 Sum_probs=145.0
Q ss_pred eecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEE
Q 001358 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420 (1092)
Q Consensus 341 ~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i 420 (1092)
-.+|..+ ++|.-. ..++.|+|+++.+.++.+.+ ..+|..=.|-.+.. |+-.+ +..|
T Consensus 73 IMnP~~~-ViALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~~-L~lVT-~taV 128 (365)
T 2xzh_A 73 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNT-VALVT-DNAV 128 (365)
T ss_dssp EECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCEEEEEECSSSE-EEEEE-SSEE
T ss_pred eeCCCcc-EEEEec-CCeEEEechHHhhhhcceec--------------------CCccEEEEecCCCe-EEEEc-CCcE
Confidence 3478777 666554 57899999999988876432 35788888876554 44443 3459
Q ss_pred EEEEccCCCCccceEEecccc----cceeEEEeeCCCCcEEEEEEe------CCCcEEEEECCCCceeEEEecCCcceEE
Q 001358 421 QLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1092)
Q Consensus 421 ~iwd~~~~~~~~~~~~l~~h~----~~v~~~~~s~d~~~l~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1092)
+-|++++..... ..+..|. ..|..-..+++.+++ +++|= -.|.+.+|..+.+ .-+.++||......
T Consensus 129 yHWs~~~~s~P~--kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~ 204 (365)
T 2xzh_A 129 YHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQ 204 (365)
T ss_dssp EEEESSTTCCCE--EEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEE
T ss_pred EEEcccCCCCCc--eeeecchhcccceEEEEEECCCCCEE-EEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEE
Confidence 999998744332 2344443 357777778899963 33332 2467889996654 45678888877666
Q ss_pred EeecccCCcc-EEEEEec---CCeEEEEEcCCC---Cc-----eEEecCC----CCceEEEEEecCCCEEEEEecCCCCc
Q 001358 491 LCPHAKENIH-FIFSISV---DGKIKAWLYDSL---GA-----RVDYDAP----GLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 491 i~~~~~~~~~-~l~s~~~---dg~i~vwd~~~~---~~-----~~~~~~~----~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
+.+...+... ++..+.. .+.+++-++... .. ...+..+ ..-..++..|+.-..++..+. -
T Consensus 205 ~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK----~ 280 (365)
T 2xzh_A 205 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y 280 (365)
T ss_dssp ECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET----T
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC----C
Confidence 6553332222 3333332 268999988543 11 1111111 122446777777777776654 6
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001358 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1092)
|.+++||+.+|.++..-+-.. ..|...+...+..-+++....|.|.--.++..
T Consensus 281 G~ihlyDleTgt~i~~nrIS~---d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 281 GYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp SEEEEEETTTCCEEEEEECCS---SCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred cEEEEEEcccCcEEEEeccCC---CceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 789999999999987766544 55655555555555666666666655554443
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.65 E-value=0.0066 Score=63.42 Aligned_cols=202 Identities=12% Similarity=0.090 Sum_probs=124.6
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEE-ecC----CC--CCeEEEEE---cCCCCCEEEEEeC-------
Q 001358 804 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILT-IMP----PS--PTATSLAF---NPHDNNVIAIGMD------- 864 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~-~~~----~~--~~i~~l~~---s~~d~~~lasg~~------- 864 (1092)
-..++.|.+....+..++ .++|..||...+..... +.. .. ..+..+.+ .| +++++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence 345788988666666665 79999999986544333 222 11 13578999 68 6777776442
Q ss_pred ------CCeEEEEEcC---CceeeEeec--ccc-----------CCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCcee
Q 001358 865 ------DSTILIYNAR---SSEVISKLE--GHS-----------KRVTGLVFSDALNILVSSGGD-AQIFVWDVDGWGIQ 921 (1092)
Q Consensus 865 ------dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~spdg~~l~s~s~D-g~i~iwd~~~~~~~ 921 (1092)
+..|..||+. +++.+.... +.. .....++..++|+..++++.- +.|...+.+....
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~- 171 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV- 171 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE-
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE-
Confidence 6789999999 787664443 211 247889999999999999887 7766666554322
Q ss_pred eeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCcee--eeeeccCC---CcCEEEE-EEecCCCE-E
Q 001358 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC--LKQWFPIS---SVPISQA-TFSCDCRM-V 993 (1092)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~~~~--~~~~~~~h---~~~v~~l-~fs~dg~~-l 993 (1092)
....+....... ......+++.|||..|++. ..+.+..+|+.+... +..-..+. -.....+ .--.+|+. |
T Consensus 172 ~~~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll 249 (334)
T 2p9w_A 172 STFAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL 249 (334)
T ss_dssp EEEEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred eeeeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence 111122211111 1246799999999988883 578899999885333 21100021 1233443 33357877 5
Q ss_pred EEEeCCCcEEEEECCC
Q 001358 994 FTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 994 ~t~s~Dg~i~vwd~~~ 1009 (1092)
++.+..+.+.+.+-+.
T Consensus 250 V~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 250 VGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEETTEEEEEECSST
T ss_pred EEcCCCCEEEEECCCC
Confidence 5555566655555544
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.59 E-value=0.022 Score=61.92 Aligned_cols=226 Identities=12% Similarity=0.082 Sum_probs=125.2
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcCCce-eeEEec---CCCCCeEEEEEcCCC---CCEEEEEeC----C----Ce
Q 001358 803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-TILTIM---PPSPTATSLAFNPHD---NNVIAIGMD----D----ST 867 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~s~~d---~~~lasg~~----d----g~ 867 (1092)
.....++|.|||+++++-.+|.|++++ .+++ .+..+. ........++++| + +..|.+... + ..
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcceE
Confidence 346789999999977776689999887 3454 222221 1235688999999 5 334444332 3 56
Q ss_pred EEEEEcCCc-------eee-Eeec---cccCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEcCCCcee--
Q 001358 868 ILIYNARSS-------EVI-SKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ-- 921 (1092)
Q Consensus 868 v~iwd~~~~-------~~~-~~l~---~h~~~V~~l~~spdg~~l~s~s~D-------------g~i~iwd~~~~~~~-- 921 (1092)
|..|+.... +.+ ..+. .|. ...|+|.|||.++++.+.. |.|.-.+.+. +..
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~ 183 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPAD 183 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTT
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCC
Confidence 777877654 111 2222 132 3579999999888875432 3344444332 100
Q ss_pred ----eeeeeecCCCCcCCCCCceEEEEec-CCCEEEEE--eCC--cEEEEEcCCce------------------eeeeec
Q 001358 922 ----TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HET--HLAIYEAEELT------------------CLKQWF 974 (1092)
Q Consensus 922 ----~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~~--~d~--~v~lwd~~~~~------------------~~~~~~ 974 (1092)
...... .++. ....++|+| +|++.++- .+. .|.+.. .+. .+..+-
T Consensus 184 npf~~~~i~a--~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~ 255 (354)
T 3a9g_A 184 NPFPNSPIWS--YGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG 255 (354)
T ss_dssp SSSTTCCEEE--ECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred CCCCCCcEEE--EccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC
Confidence 000111 1111 356899999 67777762 222 244332 221 111110
Q ss_pred cCCCcCEEEEEEe-------cCCCEEEEEeCCCcEEEEECCCC-ceEEeeccccccCCCCccCcccceEEEECCCCCCEE
Q 001358 975 PISSVPISQATFS-------CDCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1046 (1092)
Q Consensus 975 ~~h~~~v~~l~fs-------~dg~~l~t~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l 1046 (1092)
. .......++|. .+|.++++....+.|...++... ....... .+.. ..-++..+++.| |+.++
T Consensus 256 ~-~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~----~~~rp~~v~~~p-DG~ly 326 (354)
T 3a9g_A 256 S-ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFKN----VFGRLRDVVIDD-DGGIL 326 (354)
T ss_dssp T-CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECTT----TSCCEEEEEECT-TSCEE
T ss_pred C-CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---eccC----CCCCeeEEEECC-CCcEE
Confidence 1 13467888883 67877777767778888888753 3321111 1111 112456788998 46666
Q ss_pred EEEe
Q 001358 1047 AVGL 1050 (1092)
Q Consensus 1047 ~~~~ 1050 (1092)
++..
T Consensus 327 v~~~ 330 (354)
T 3a9g_A 327 ISTS 330 (354)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6654
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.59 E-value=0.00039 Score=83.34 Aligned_cols=234 Identities=9% Similarity=-0.016 Sum_probs=135.2
Q ss_pred CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC----CceeEEEecCCcceEEEe
Q 001358 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEGHGAPVYSLC 492 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~i~ 492 (1092)
.+.|+..++.+.+... +......+..++|.+.+.. ++++-...+.|+.+++.+ ......+.........++
T Consensus 385 ~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 3467788887654322 1122335678999987763 444445567899999875 222222211112334566
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001358 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1092)
+.+. ++.++++-...+.|.+++++.......+.........+++.|++.+|+..... ..+.|+.+++..... ..+.
T Consensus 460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~~-~~l~ 535 (699)
T 1n7d_A 460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVDI-YSLV 535 (699)
T ss_dssp CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCCC-CEES
T ss_pred EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCCe-eEEE
Confidence 6432 34555665667889999887655444433333455678999977766654321 125687777654322 2221
Q ss_pred eccccCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358 573 GLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
... ......++++|++..|+.+ +..+.|.++++........+...........+++..+ .++++....+.|..++.
T Consensus 536 ~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 536 TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp CSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred eCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 111 2456789999987666655 4667899999875444433332222223456666554 45555566789999998
Q ss_pred CCCCeeeeccc
Q 001358 652 PESNSVDAAGV 662 (1092)
Q Consensus 652 ~~~~~~~~~~~ 662 (1092)
.+++.+..+..
T Consensus 613 ~~G~~~~~i~~ 623 (699)
T 1n7d_A 613 LTGSDVNLLAE 623 (699)
T ss_dssp TTEEEEECCCT
T ss_pred cCCCceEEeec
Confidence 77766665543
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.56 E-value=0.016 Score=63.07 Aligned_cols=228 Identities=11% Similarity=0.079 Sum_probs=120.8
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCcee--eEEec---CCCCCeEEEEEcCCC---CCEEEEEeC-C-----CeEE
Q 001358 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIM---PPSPTATSLAFNPHD---NNVIAIGMD-D-----STIL 869 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~--~~~~~---~~~~~i~~l~~s~~d---~~~lasg~~-d-----g~v~ 869 (1092)
....++|.|||+++++-..|.|.+++ +++. +..+. ........++++| + +..|+++.. . +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence 46789999999977776679999998 3432 22221 1235678999999 6 334444333 2 6788
Q ss_pred EEEcCCce-----e-eEeec---cccCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEcCCCcee------
Q 001358 870 IYNARSSE-----V-ISKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ------ 921 (1092)
Q Consensus 870 iwd~~~~~-----~-~~~l~---~h~~~V~~l~~spdg~~l~s~s~D-------------g~i~iwd~~~~~~~------ 921 (1092)
.|+...+. . +..+. +.......++|.|||.+.++.+.. |.|.-++.+. ...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 88877531 1 22233 111123579999999877775432 3444444432 100
Q ss_pred -----eeeeeecCCCCcCCCCCceEEEEec-CCCEEEE-EeCCcE------EEEEcCCce------------------ee
Q 001358 922 -----TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLL-VHETHL------AIYEAEELT------------------CL 970 (1092)
Q Consensus 922 -----~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~-~~d~~v------~lwd~~~~~------------------~~ 970 (1092)
....... ++. ....++|+| +|.+.++ ...+.+ .|.-+..+. .+
T Consensus 188 ~~~~~~~~i~a~--G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 188 GRRGARPEVYSL--GHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTSCTTEEEE--CCS----EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCCccEEEE--cCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 0001110 111 256799999 6777666 222221 233333222 11
Q ss_pred eeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEee-ccccccCCCCccCcccceEEEECCCCCCEEEEE
Q 001358 971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI-LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1049 (1092)
Q Consensus 971 ~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~ 1049 (1092)
..+ .+......++| .+|.++++....+.|...+++........ ....++.. .-++..+++.| |+.++++.
T Consensus 262 ~~~--~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 262 YFW--PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp EEC--TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEE
T ss_pred Eec--CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEE
Confidence 111 22345677888 57777776666677777777654311000 00011111 12456788888 46655554
Q ss_pred e
Q 001358 1050 L 1050 (1092)
Q Consensus 1050 ~ 1050 (1092)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 3
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.55 E-value=0.00042 Score=83.06 Aligned_cols=205 Identities=9% Similarity=0.010 Sum_probs=124.0
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEEcCC----ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001358 803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
..+..++|++.+..|..+. .+.|+.+++.+ ......+.........+++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456789998887777775 47899999875 22222222222345678888635666666566789999998865
Q ss_pred eeeEeeccccCCeEEEEEcCCCCEEEEEeC-C-CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE
Q 001358 877 EVISKLEGHSKRVTGLVFSDALNILVSSGG-D-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954 (1092)
Q Consensus 877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~ 954 (1092)
.....+.........|++.|++.+|..+.. . +.|.+.++....... .+.. .. .....|+|+|++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~~---~l---~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE---NI---QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESCS---SC---SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEeC---CC---CCccEEEEeccCCEEEEE
Confidence 433333333345678899997655544432 2 678777776532111 1111 11 135689999987766664
Q ss_pred --eCCcEEEEEcCCceeeeeecc--CCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeec
Q 001358 955 --HETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 955 --~d~~v~lwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
..+.|..+++.... ...+.. ........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 45679999986432 222222 11233445566544 455555567889999998898876665
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.51 E-value=0.12 Score=55.43 Aligned_cols=236 Identities=12% Similarity=0.091 Sum_probs=145.5
Q ss_pred EeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001358 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1092)
Q Consensus 340 v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1092)
.-.+|..+ ++|.-. ..++.|+|+++...++.+.+ ..+|..=.|-.+. .|+-.+ +..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~ta 126 (494)
T 1bpo_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA 126 (494)
T ss_dssp EEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETT-EEEEEC-SSE
T ss_pred eeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCC-eEEEEc-CCe
Confidence 34567776 555543 57899999999888875432 2467777776544 444443 446
Q ss_pred EEEEEccCCCCccceEEecccc----cceeEEEeeCCCCcEEEEEEe------CCCcEEEEECCCCceeEEEecCCcceE
Q 001358 420 VQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1092)
Q Consensus 420 i~iwd~~~~~~~~~~~~l~~h~----~~v~~~~~s~d~~~l~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1092)
|+-|++++..... ..+..|. ..|..-..++|.+++ +++|= -.|.+.+|..+.+ .-+.+.||.....
T Consensus 127 VyHWsi~~~s~P~--kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 127 VYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 202 (494)
T ss_dssp EEEEESSSSCCCE--EEEECCGGGTTCEEEEEEECTTSSEE-EEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEE
T ss_pred eEEecccCCCCch--hheecchhcccceEEEEEECCCCCeE-EEEeecccCCcccceEEEeecccc-ccchheeeeeeeE
Confidence 9999998644332 2344443 357777788999963 33332 3467889996655 4567888887776
Q ss_pred EEeecccCCcc-EEEEEecC---CeEEEEEcCCC---C-----ceEEecCC----CCceEEEEEecCCCEEEEEecCCCC
Q 001358 490 SLCPHAKENIH-FIFSISVD---GKIKAWLYDSL---G-----ARVDYDAP----GLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 490 ~i~~~~~~~~~-~l~s~~~d---g~i~vwd~~~~---~-----~~~~~~~~----~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
.+.+...+... ++..+... +.+++-++... . ....+..+ ..-..++..|+.-..++..+.
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK---- 278 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----
Confidence 66554322222 33334332 78999988653 1 11111111 123456778887777777664
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001358 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1092)
-|.++++|+.++.++..-+-.. ..|...+......-+++....|.|.--.++..
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~---~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred CceEEEEecccceeeeeecccC---CceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 6789999999999987666544 56655555555555666666666555554443
No 308
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.35 E-value=0.18 Score=51.95 Aligned_cols=231 Identities=14% Similarity=0.134 Sum_probs=150.7
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeeEeeccc
Q 001358 807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 885 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 885 (1092)
+.-.+|..+.+|.-....+.++|+++...+..+.- ...|.-=.|-. .+.|+..+ +..|+-|++.. ..+++.+..|
T Consensus 71 sAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 56678999999988888999999999988887763 35666667764 44666555 56799999975 3566666655
Q ss_pred c----CCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC-----
Q 001358 886 S----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT----- 949 (1092)
Q Consensus 886 ~----~~V~~l~~spdg~~l~s~s~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~----- 949 (1092)
. ..|..-..+++.++++..|- .|.+.+|..+.+ .-+..+||.. .-..+-.+|.
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~------~sQ~ieGhaa-----~F~~~~~~g~~~~~~ 215 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA-----SFAQFKMEGNAEEST 215 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT------EEEEECCSEE-----EEEEECCTTCSSCEE
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc------ccceeeeeee-----eeEEEecCCCCCCce
Confidence 3 46777788899999886553 367889999874 3445566542 1122333332
Q ss_pred EEEEEe----CCcEEEEEcCCc---e------eeeeeccC--CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001358 950 RFLLVH----ETHLAIYEAEEL---T------CLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1092)
Q Consensus 950 ~la~~~----d~~v~lwd~~~~---~------~~~~~~~~--h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~ 1014 (1092)
+++.+. .++++|.++... . .+..+++. -.+-..++..|+.-..+..-+.-|.|.+||+++|.++.
T Consensus 216 lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 216 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 223232 257999988432 1 11111211 25566677888877788888899999999999999987
Q ss_pred eeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001358 1015 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 1015 ~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
+-+. +.+.|... +.+. ...-++.....|.|.--.+.+.
T Consensus 296 ~nrI--------S~d~iF~t--a~~~-~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 296 MNRI--------SGETIFVT--APHE-ATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEC--------CSSCEEEE--EEEG-GGTEEEEEETTCEEEEEEECTT
T ss_pred Eecc--------CCCceEEe--cccC-CCCcEEEEcCCCEEEEEEECcc
Confidence 6651 12334422 2322 2345666668888776666543
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.27 E-value=0.046 Score=59.30 Aligned_cols=236 Identities=11% Similarity=0.104 Sum_probs=125.8
Q ss_pred CeeEEEEecCCC-EEEEEeCCeEEEEEcCCceeeEE---e----cCCCCCeEEEEEcCCC---CCEEEEEe-C-------
Q 001358 804 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILT---I----MPPSPTATSLAFNPHD---NNVIAIGM-D------- 864 (1092)
Q Consensus 804 ~v~~~~~s~dg~-~l~~~sdg~i~iwd~~~~~~~~~---~----~~~~~~i~~l~~s~~d---~~~lasg~-~------- 864 (1092)
....++|.|+|+ ++++-..|.|++++.. ++.... + .........++++| + +..|.+.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAP-DFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECT-THHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECC-CCCCCCEEEEEEeCCCCCCCc
Confidence 457899999999 7766667999999854 332211 1 11234568999999 4 33444432 2
Q ss_pred CCeEEEEEcCCc-------eee-Eeec-----cccCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEcCCC
Q 001358 865 DSTILIYNARSS-------EVI-SKLE-----GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGW 918 (1092)
Q Consensus 865 dg~v~iwd~~~~-------~~~-~~l~-----~h~~~V~~l~~spdg~~l~s~s~D-------------g~i~iwd~~~~ 918 (1092)
...|..|++..+ +.+ ..+. .|. ...|+|.|||.++++.+.. |.|.-.+.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235666666432 111 1121 132 3569999999777776542 34555555431
Q ss_pred cee-----------eeeeeecCCCCcCCCCCceEEEEec-CCCEEEEE--eCCcEEEEEcCCceee--------------
Q 001358 919 GIQ-----------TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEELTCL-------------- 970 (1092)
Q Consensus 919 ~~~-----------~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~~--~d~~v~lwd~~~~~~~-------------- 970 (1092)
.. ...... .++. ....++|.| +|++.++- .++.=.|.-+..+...
T Consensus 175 -~p~~npf~~~~~~~~~i~a--~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~ 247 (353)
T 2g8s_A 175 -IPDDNPFIKESGVRAEIWS--YGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGF 247 (353)
T ss_dssp -CCTTCTTTTSTTSCTTEEE--ECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSS
T ss_pred -CCCCCCCcCCCCCCccEEE--EcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCC
Confidence 00 000111 1111 367899999 67666662 2222222222111110
Q ss_pred ---------------eeeccCCCcCEEEEEEec-------CCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCcc
Q 001358 971 ---------------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1028 (1092)
Q Consensus 971 ---------------~~~~~~h~~~v~~l~fs~-------dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1028 (1092)
..+.-.+...+..++|.. +|.++++.-..+.|...++..+........ +. .
T Consensus 248 ~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~---~~----~ 320 (353)
T 2g8s_A 248 KIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI---LT----D 320 (353)
T ss_dssp CCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE---SG----G
T ss_pred ccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc---cc----C
Confidence 000001234677888863 577777777778888888886654433221 11 1
Q ss_pred CcccceEEEECCCCCCEEEEEe-CCCcEEEEec
Q 001358 1029 LHVYPHAIAAHPLKPTQFAVGL-TNGEVYVIEP 1060 (1092)
Q Consensus 1029 ~~v~~~~~~~~p~~~~~l~~~~-~dg~v~~w~~ 1060 (1092)
..-++..+++.| |+.++++.. .+| +||.+
T Consensus 321 ~~~rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 321 RGQRIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp GCCCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred CCCceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 112467889999 467555443 344 45555
No 310
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.26 E-value=0.16 Score=53.09 Aligned_cols=170 Identities=7% Similarity=0.021 Sum_probs=108.6
Q ss_pred cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE---CCCC
Q 001358 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW---SPDG 408 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~---spdg 408 (1092)
...---.+++|.+....++++.-..++|..||...+..... .++ ++.. -......+..|.| .|+|
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~--~~s~---------~g~~~~~~sGl~~~~~D~~g 77 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID--GASS---------NGDGEQQMSGLSLLTHDNSK 77 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT--TTCC---------SSCCSEEEEEEEESSSSSCC
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC--Cccc---------cCCCcceeeEEEEeccCCCC
Confidence 33334568899886555677766789999999986654322 110 0000 0001124678999 6888
Q ss_pred CEEEEEe-------------CCCEEEEEEcc---CCCCccceEEecccc-----------cceeEEEeeCCCCcEEEEEE
Q 001358 409 SLLGVAY-------------SKHIVQLYAYH---GGSDARQQLEIDAHV-----------GNVNDLAFSAPCKQISVITC 461 (1092)
Q Consensus 409 ~~las~~-------------~d~~i~iwd~~---~~~~~~~~~~l~~h~-----------~~v~~~~~s~d~~~l~l~s~ 461 (1092)
+++++.. .+..|..+|+. +++.+... .+.... .....++..++|+ ..|++
T Consensus 78 rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~ 154 (334)
T 2p9w_A 78 RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAF 154 (334)
T ss_dssp EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEE
T ss_pred cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeC
Confidence 8888644 25779999999 77655422 232221 2488999999999 78888
Q ss_pred eCC-CcEEEEECCCCceeEEEecC------CcceEEEeecccCCccEEEEEecCCeEEEEEcCCC
Q 001358 462 GDD-KTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 519 (1092)
Q Consensus 462 ~~d-~~i~vwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 519 (1092)
+.- +.|...+.+.. .+..+... ....+.|++++ ++.+|++....|.+..+|+...
T Consensus 155 s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 155 ALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred CCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence 887 88877775433 33332111 11255778854 6677877777999999998853
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.25 E-value=0.043 Score=58.83 Aligned_cols=208 Identities=11% Similarity=0.048 Sum_probs=114.3
Q ss_pred cEEEEEECCCCCEEEEEe------------CCCEEEEEEccCCCCccceEEecc-----cccceeEEEeeC--CCCcEEE
Q 001358 398 SVNRVVWSPDGSLLGVAY------------SKHIVQLYAYHGGSDARQQLEIDA-----HVGNVNDLAFSA--PCKQISV 458 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~------------~d~~i~iwd~~~~~~~~~~~~l~~-----h~~~v~~~~~s~--d~~~l~l 458 (1092)
..-.++..|+|..+++++ .+|.|.++|..+.........+.+ .......+.+.+ ++...++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 344566788886666652 688999999974321111112333 234566777766 4543233
Q ss_pred EEEeC--CCcEEEEECCCCc-e---eEEEecC-CcceEEEeecccCCccEEEEEec-----------------CCeEEEE
Q 001358 459 ITCGD--DKTIKVWDAVTGS-R---TYSFEGH-GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAW 514 (1092)
Q Consensus 459 ~s~~~--d~~i~vwd~~~~~-~---~~~~~~~-~~~v~~i~~~~~~~~~~l~s~~~-----------------dg~i~vw 514 (1092)
++-.. +.+|.+|+++.+. . +.++.+. -...+.+.+. ++|.+.++... .|.|..+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 43333 5678888766532 2 2334332 2345677774 45666666541 2344444
Q ss_pred EcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC-CeE--EEEEeeccccCCceEEEEEcC-CC
Q 001358 515 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-AK 590 (1092)
Q Consensus 515 d~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~-~~ 590 (1092)
+ ..+.. .....-...+.++|+||++.|+.+.. ....|+.|++.. ++. .+.+ .. .+....+++.+ +|
T Consensus 209 d--~~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~-~~---~g~PDGi~vD~e~G 278 (355)
T 3sre_A 209 S--PNDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVL-SF---DTLVDNISVDPVTG 278 (355)
T ss_dssp C--TTCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEE-EC---SSEEEEEEECTTTC
T ss_pred E--CCeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEE-eC---CCCCceEEEeCCCC
Confidence 3 33322 22222234678999999999888754 255789998753 433 2233 11 25678889999 58
Q ss_pred CEEEEEeCC-CeEEEEECC--CCceEEEEe
Q 001358 591 DQILAAGDD-HVIKIWDMN--KVQLLTTID 617 (1092)
Q Consensus 591 ~~l~~~s~d-g~i~iwd~~--~~~~~~~~~ 617 (1092)
+..+++..+ +.|..|+.. .+..+..+.
T Consensus 279 ~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred cEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 877766533 344445544 244444444
No 312
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.25 E-value=0.098 Score=56.71 Aligned_cols=107 Identities=15% Similarity=0.168 Sum_probs=62.6
Q ss_pred CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC---CCEE
Q 001358 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLL 411 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~l 411 (1092)
...+.++|.|||+ ++++- .++.|.+++ +++......++ +..........|+|+|| +.+|
T Consensus 31 ~~P~~ia~~pdG~-l~V~e-~~g~I~~i~--~g~~~~~~~~~--------------v~~~g~~~p~gia~~pdf~~~g~l 92 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAE-RPGRIRLFR--EGRLSTYAELS--------------VYHRGESGLLGLALHPRFPQEPYV 92 (352)
T ss_dssp SCEEEEEECTTSC-EEEEE-TTTEEEEEE--TTEEEEEEECC--------------CCCSTTCSEEEEEECTTTTTSCEE
T ss_pred CCceEEEEcCCCe-EEEEe-CCCeEEEEE--CCCccEeecce--------------EeecCCCCceeEEECCCCCCCCEE
Confidence 3678999999998 55554 458999998 44321110000 12223457889999998 5666
Q ss_pred EEEeC-C-----CEEEEEEccCCCCc--cceE-Eec---ccccceeEEEeeCCCCcEEEEEE
Q 001358 412 GVAYS-K-----HIVQLYAYHGGSDA--RQQL-EID---AHVGNVNDLAFSAPCKQISVITC 461 (1092)
Q Consensus 412 as~~~-d-----~~i~iwd~~~~~~~--~~~~-~l~---~h~~~v~~~~~s~d~~~l~l~s~ 461 (1092)
.++.. . +.|..|+...+..- +... .+. +.......++|.|||. ++++.
T Consensus 93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 55533 2 56888888754211 1111 122 1112346899999996 45543
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.20 E-value=0.25 Score=53.48 Aligned_cols=233 Identities=17% Similarity=0.136 Sum_probs=118.7
Q ss_pred CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC---CCE
Q 001358 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSL 410 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~ 410 (1092)
-...+.++|.|||+ ++++- .++.|.+++ .+|+ .....++ +..........|+|+|+ +..
T Consensus 28 l~~P~~ia~~pdG~-l~V~e-~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTE-RPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEE-TTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEEe-CCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCCE
Confidence 34789999999997 55554 458999887 3444 1110000 11223456889999998 555
Q ss_pred EEEEeC----C----CEEEEEEccCCC-Ccc---ce-EEec-ccccceeEEEeeCCCCcEEEEEEeC-------------
Q 001358 411 LGVAYS----K----HIVQLYAYHGGS-DAR---QQ-LEID-AHVGNVNDLAFSAPCKQISVITCGD------------- 463 (1092)
Q Consensus 411 las~~~----d----~~i~iwd~~~~~-~~~---~~-~~l~-~h~~~v~~~~~s~d~~~l~l~s~~~------------- 463 (1092)
|.++.. + ..|..|+...+. .+. .+ ..+. +.......++|.|||. ++++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 555433 2 567888876541 111 11 0121 1111346799999997 4555332
Q ss_pred CCcEEEEECCCC---------ceeEEEecCCcceEEEeecccCCccEEEEEecCC---eEEEEEcCCCC-----------
Q 001358 464 DKTIKVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLG----------- 520 (1092)
Q Consensus 464 d~~i~vwd~~~~---------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~----------- 520 (1092)
.+.|.-.+.+.. ..+.. .++.. ...++|.+. ++.++++-.... .|.+. ..+.
T Consensus 168 ~G~I~ri~~dG~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~ 242 (354)
T 3a9g_A 168 AGKILRVDEEGRPPADNPFPNSPIWS-YGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKA 242 (354)
T ss_dssp SSEEEEECTTSCCCTTSSSTTCCEEE-ECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCC
T ss_pred CeEEEEEcCCCCCCCCCCCCCCcEEE-EccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCC
Confidence 245555554321 11221 23433 345677542 344444432221 13222 1111
Q ss_pred -------ceEEecCCCCceEEEEEe-------cCCCEEEEEecCCCCceeEEEEeCCCC-eEE--EEEeeccccCCceEE
Q 001358 521 -------ARVDYDAPGLGCTRMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEG-AIK--RTYQGLQLQHNSVSV 583 (1092)
Q Consensus 521 -------~~~~~~~~~~~i~~~~~s-------~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~~~v~~ 583 (1092)
....+.........++|. .+|+++++... .+.|...++... +.. ..+... ....+..
T Consensus 243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~--~~~rp~~ 316 (354)
T 3a9g_A 243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKN--VFGRLRD 316 (354)
T ss_dssp CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTT--TSCCEEE
T ss_pred CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccC--CCCCeeE
Confidence 112221223356778883 56765555432 445777777643 322 122111 1256888
Q ss_pred EEEcCCCCEEEEEe
Q 001358 584 VHFDTAKDQILAAG 597 (1092)
Q Consensus 584 ~~~~~~~~~l~~~s 597 (1092)
+++.|||...++..
T Consensus 317 v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 317 VVIDDDGGILISTS 330 (354)
T ss_dssp EEECTTSCEEEEEC
T ss_pred EEECCCCcEEEEEe
Confidence 99999986555543
No 314
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.12 E-value=0.026 Score=60.70 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=82.6
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCC----CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee----
Q 001358 807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---- 878 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~---- 878 (1092)
......+|.-++.+.++.||.-++......+.+... -..|..+..+| +|++||..+ +..|.|-.+..+..
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 345667889999999999999998855555555443 23688999999 899999876 55799988874321
Q ss_pred --------eEeecc------ccCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCCC
Q 001358 879 --------ISKLEG------HSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGW 918 (1092)
Q Consensus 879 --------~~~l~~------h~~~V~~l~~spd---g~~l~s~s~Dg~i~iwd~~~~ 918 (1092)
...+.- ...+|..+.|+|- +..|++-..|++|++||+...
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS 159 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence 112221 2567999999995 568999999999999999873
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.06 E-value=0.029 Score=59.52 Aligned_cols=224 Identities=13% Similarity=0.083 Sum_probs=119.1
Q ss_pred CeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCce-----eeEeeccccCCeE
Q 001358 823 GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARSSE-----VISKLEGHSKRVT 890 (1092)
Q Consensus 823 g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~~-----~~~~l~~h~~~V~ 890 (1092)
..+.+||..+.+-.. .+.........+. . ++.+++.|+.+ ..+.+||..+.+ .+..+......-.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~ 107 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG 107 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence 358899988765322 2222111222222 2 56788888765 368999988765 2222222222222
Q ss_pred EEEEcCCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eC-----CcE
Q 001358 891 GLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----THL 959 (1092)
Q Consensus 891 ~l~~spdg~~l~s~s~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d-----~~v 959 (1092)
.+.+ ++++++.|+.++ .+.+||..+.+......+. ... ....+..-++++++.| .+ ..+
T Consensus 108 ~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r------~~~~~~~~~~~iyv~GG~~~~~~~~~~ 177 (301)
T 2vpj_A 108 ATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ--TAR------EGAGLVVASGVIYCLGGYDGLNILNSV 177 (301)
T ss_dssp EEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS--SCC------BSCEEEEETTEEEEECCBCSSCBCCCE
T ss_pred EEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC--CCc------ccceEEEECCEEEEECCCCCCcccceE
Confidence 2232 677888777543 5888998886644422221 111 1112223367766663 22 469
Q ss_pred EEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEeeccccccCCCCccCcccce
Q 001358 960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus 960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
.+||..+.+-...-.... ......+...++++++.|+.+ ..+.+||+.+.+....- ..+.. .....
T Consensus 178 ~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~----~~p~~----r~~~~ 248 (301)
T 2vpj_A 178 EKYDPHTGHWTNVTPMAT-KRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT----SMTTP----RCYVG 248 (301)
T ss_dssp EEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC----CCSSC----CBSCE
T ss_pred EEEeCCCCcEEeCCCCCc-ccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC----CCCCc----cccee
Confidence 999988765443211111 111112223377788888764 46899999988654221 12211 11112
Q ss_pred EEEECCCCCCEEEEEeCCC-----cEEEEecCCCCCccccCCCC
Q 001358 1035 AIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPPD 1073 (1092)
Q Consensus 1035 ~~~~~p~~~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~~~ 1073 (1092)
++.. ++.+++.|+.++ .|.+||+. ..+|...++.
T Consensus 249 ~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~ 287 (301)
T 2vpj_A 249 ATVL---RGRLYAIAGYDGNSLLSSIECYDPI--IDSWEVVTSM 287 (301)
T ss_dssp EEEE---TTEEEEECCBCSSSBEEEEEEEETT--TTEEEEEEEE
T ss_pred EEEE---CCEEEEEcCcCCCcccccEEEEcCC--CCeEEEcCCC
Confidence 2223 357888887663 56777774 4568776543
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.05 E-value=0.041 Score=58.53 Aligned_cols=233 Identities=10% Similarity=0.010 Sum_probs=124.6
Q ss_pred CEEEEEe---CCeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCC----CeEEEEEcCCcee--eEeec
Q 001358 815 AYLFSAS---GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEV--ISKLE 883 (1092)
Q Consensus 815 ~~l~~~s---dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~v~iwd~~~~~~--~~~l~ 883 (1092)
.+++.|+ ...+.+||..+.+-.. .+........++.+ ++.+++.|+.+ ..+.+||..+.+- +..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3444454 2569999998765332 22222222233333 56788888765 5789999988642 22332
Q ss_pred cccCCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-e-
Q 001358 884 GHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H- 955 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~- 955 (1092)
.....-..+.+ ++++++.|+.+ ..+.+||..+.+......+.. .. ....+..-++++++.+ .
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r------~~~~~~~~~~~iyv~GG~~ 159 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT--QR------CSHGMVEANGLIYVCGGSL 159 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS--CC------BSCEEEEETTEEEEECCEE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC--Cc------ceeEEEEECCEEEEECCCC
Confidence 22222222232 67788888765 458899998866433211111 11 1112223366666663 2
Q ss_pred --------CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEeecccccc
Q 001358 956 --------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYL 1022 (1092)
Q Consensus 956 --------d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~~~~~ 1022 (1092)
-..+.+||..+.+-...-.... ......+..-++++++.|+.+ ..+.+||+.+.+.... ...
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~ 234 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV----SPM 234 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC----CCC
T ss_pred CCCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC----CCC
Confidence 3458899998775433211111 111112222377778877754 3588999988754422 122
Q ss_pred CCCCccCcccceEEEECCCCCCEEEEEeCC-----CcEEEEecCCCCCccccCCCCC
Q 001358 1023 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus 1023 ~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d-----g~v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
+.. ....+++.. ++.+++.|+.+ ..+.+||+ ...+|...++..
T Consensus 235 p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~ 282 (306)
T 3ii7_A 235 PWK-----GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT--ETDKWVANSKVR 282 (306)
T ss_dssp SCC-----BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET--TTTEEEEEEEEE
T ss_pred CCC-----ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC--CCCeEEeCCCcc
Confidence 221 111222222 35788888865 45777777 445688765443
No 317
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.00 E-value=0.54 Score=50.61 Aligned_cols=259 Identities=11% Similarity=0.079 Sum_probs=149.9
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001358 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
...|.+.|+.++..+....- ...+.-.+|..+.++.-. ..++.|||+++.+.+........ |..-.|-.+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~---VvfWkWis~ 116 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWISL 116 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEEEEET
T ss_pred CCeEEEEECCCCCcceeccc------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC---ceEEEecCC
Confidence 44788899988665432221 223455888887666654 78999999999999998876643 555666544
Q ss_pred CCEEEEEeCCCeEEEEECCCC-CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccce
Q 001358 634 GTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 634 ~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~ 712 (1092)
+.|+..+. ..|+-|++... .+...+..|..-
T Consensus 117 -~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L---------------------------------------------- 148 (494)
T 1bpo_A 117 -NTVALVTD-NAVYHWSMEGESQPVKMFDRHSSL---------------------------------------------- 148 (494)
T ss_dssp -TEEEEECS-SEEEEEESSSSCCCEEEEECCGGG----------------------------------------------
T ss_pred -CeEEEEcC-CeeEEecccCCCCchhheecchhc----------------------------------------------
Confidence 34555544 58999998642 122221111100
Q ss_pred eceeeccCccceecccCCccccccEEEEEEecCCcEEEEeec-------CCeeEEeeecCCccccCcccccccCCccccC
Q 001358 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-------NGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 785 (1092)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1092)
....|-....+++.++++..+- .|.+.+|..+....
T Consensus 149 --------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s----------------- 191 (494)
T 1bpo_A 149 --------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS----------------- 191 (494)
T ss_dssp --------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-----------------
T ss_pred --------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-----------------
Confidence 1223444555566665554332 25566665543211
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEEecC---CCEEEEEe----CCeEEEEEcCCc---------eeeEEecC---CCCCe
Q 001358 786 RHGPQFMVNDTTDSNSQEAVPCFALSKN---DAYLFSAS----GGVISLYIVMTF---------KTILTIMP---PSPTA 846 (1092)
Q Consensus 786 ~~~~~~~~~~l~~~~~~~~v~~~~~s~d---g~~l~~~s----dg~i~iwd~~~~---------~~~~~~~~---~~~~i 846 (1092)
.. +. +|......+.+..+ ..+++.+. .++++|.++... +.+..+-. ..+--
T Consensus 192 -----Q~---ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFP 261 (494)
T 1bpo_A 192 -----QP---IE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 261 (494)
T ss_dssp -----EE---EC--CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCE
T ss_pred -----ch---he--eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCce
Confidence 00 00 12222211111111 12333332 378999988532 11111111 23455
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001358 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 918 (1092)
Q Consensus 847 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~ 918 (1092)
.++.+|+ .-.++..-+.-|.+++||+.++.++..-+-....|-..+-..+..=++.....|.|.--.++..
T Consensus 262 vamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 262 VAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred eEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 7888998 6678889999999999999999998777666666766666555555555667777766666553
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.97 E-value=0.041 Score=58.35 Aligned_cols=236 Identities=11% Similarity=-0.006 Sum_probs=119.3
Q ss_pred CCCEEEEEe-CC-----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC-----CcEEEEECCCC
Q 001358 407 DGSLLGVAY-SK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG 475 (1092)
Q Consensus 407 dg~~las~~-~d-----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~ 475 (1092)
++..++.|+ .+ ..+.+||..+++-.. ...+.... ....+...+++ +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r--~~~~~~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKR--RYVASVSLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCC--BSCEEEEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhh--ccccEEEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666665 32 358889988754211 11111111 11112223555 66667654 46899998887
Q ss_pred c---eeEE--EecCCcceEEEeecccCCccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEE
Q 001358 476 S---RTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 476 ~---~~~~--~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
+ -... +.........+.+ ++.+++.|+.++ .+.+||..+.+-...-..+.......+...+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence 6 3222 1111111111212 456777776543 577888766543222111111111122223677777
Q ss_pred EEecCCC-CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCC
Q 001358 546 SCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 546 ~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~ 619 (1092)
.++.++. ....+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+....-...
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 7665332 13458999998876544321111 1112222222 45566666653 46899999887765443322
Q ss_pred CCCCCCceEEEccCCCEEEEEeCC-----CeEEEEECCCCCe
Q 001358 620 GGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESNS 656 (1092)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~ 656 (1092)
.. .....+..-++++++.|+.+ ..+.+||..+.+.
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 21 12222233367777777765 4577888876643
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.93 E-value=0.083 Score=55.93 Aligned_cols=222 Identities=10% Similarity=0.039 Sum_probs=117.2
Q ss_pred CeEEEEEcCCceeeEE--ecCCCCCeEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCcee--eEeeccccCCeEEEE
Q 001358 823 GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEV--ISKLEGHSKRVTGLV 893 (1092)
Q Consensus 823 g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~--~~~l~~h~~~V~~l~ 893 (1092)
..+..||..+.+-... +......-..+.+ ++.+++.|+.++ .+.+||..+.+- +..+......-..+.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM---AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE---CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE
Confidence 4588899887653222 2211112222222 567777777553 688999887642 222222122222222
Q ss_pred EcCCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-e-------CCcEE
Q 001358 894 FSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-------ETHLA 960 (1092)
Q Consensus 894 ~spdg~~l~s~s~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-------d~~v~ 960 (1092)
+ ++++++.|+.++ .+.+||+.+.+..... ...... .-.++ ..-++++++.| . -..+.
T Consensus 107 ~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r----~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 107 L--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA---PMNTRR----SSVGV-GVVGGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp E--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC---CCSSCC----BSCEE-EEETTEEEEECCEETTTTEECCCEE
T ss_pred E--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecC---CCCCcc----cCceE-EEECCEEEEEeCCCCCCCccccEEE
Confidence 2 677888887654 4778888876543322 111111 11122 22366666663 2 23588
Q ss_pred EEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEeeccccccCCCCccCcccceE
Q 001358 961 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035 (1092)
Q Consensus 961 lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1035 (1092)
+||..+.+-...-.......-.+ +..-++++++.|+.+ ..+.+||+.+.+....- ..+.. .....
T Consensus 177 ~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~~~~-----r~~~~ 246 (302)
T 2xn4_A 177 CYNATTNEWTYIAEMSTRRSGAG-VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA----DMNMC-----RRNAG 246 (302)
T ss_dssp EEETTTTEEEEECCCSSCCBSCE-EEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC----CCSSC-----CBSCE
T ss_pred EEeCCCCcEEECCCCcccccccc-EEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCC----CCCCc-----cccCe
Confidence 99998765433211111111112 223377888888765 36889999887554221 12211 11112
Q ss_pred EEECCCCCCEEEEEeCCC-----cEEEEecCCCCCccccCC
Q 001358 1036 IAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLP 1071 (1092)
Q Consensus 1036 ~~~~p~~~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~ 1071 (1092)
++.. ++.+++.|+.++ .+.+||+. ..+|...+
T Consensus 247 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~ 283 (302)
T 2xn4_A 247 VCAV--NGLLYVVGGDDGSCNLASVEYYNPT--TDKWTVVS 283 (302)
T ss_dssp EEEE--TTEEEEECCBCSSSBCCCEEEEETT--TTEEEECS
T ss_pred EEEE--CCEEEEECCcCCCcccccEEEEcCC--CCeEEECC
Confidence 2222 357888888664 47888884 45698776
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.89 E-value=0.23 Score=53.67 Aligned_cols=237 Identities=8% Similarity=-0.011 Sum_probs=118.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC--CccceE-EecccccceeEEEeeCC---CCcEEEEEEeC-------
Q 001358 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQL-EIDAHVGNVNDLAFSAP---CKQISVITCGD------- 463 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~-~l~~h~~~v~~~~~s~d---~~~l~l~s~~~------- 463 (1092)
.....|+|.|||+.|.++...|.|++++..... .+.... ...........++|+|+ +.. +.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCCc
Confidence 457889999999944455577899999854321 111000 01112345689999996 554 3333222
Q ss_pred CCcEEEEECCCC--c--eeEE-EecC------CcceEEEeecccCCccEEEEEec-------------CCeEEEEEcCCC
Q 001358 464 DKTIKVWDAVTG--S--RTYS-FEGH------GAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSL 519 (1092)
Q Consensus 464 d~~i~vwd~~~~--~--~~~~-~~~~------~~~v~~i~~~~~~~~~~l~s~~~-------------dg~i~vwd~~~~ 519 (1092)
...|..|+...+ . .... +... ...-..++|. +||.+.++.+. .|.|.-++.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235666666533 1 1111 1111 1113457774 46666555433 245666665532
Q ss_pred C------------ceEEecCCCCceEEEEEec-CCCEEEEEecCCCCceeEEEEe--------CCCC-------------
Q 001358 520 G------------ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWN--------ESEG------------- 565 (1092)
Q Consensus 520 ~------------~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd--------~~~~------------- 565 (1092)
- ....+...-.....++|.| +|+..++ -...++...|.+.. ...+
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN-EHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE-EECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE-ecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 0 1111111223467899999 5554443 32211111222211 1000
Q ss_pred --------eEEEEEeeccccCCceEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCceEEEEeC-CCCCCCCceEE
Q 001358 566 --------AIKRTYQGLQLQHNSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-GGGLPENPRIC 629 (1092)
Q Consensus 566 --------~~~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~ 629 (1092)
..+..+.. ......+.|.. ++.++++.-..+.|...++..++....... ......+..++
T Consensus 254 ~~~~~~~~~P~~~~~~----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~ 329 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKD----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR 329 (353)
T ss_dssp BSSCTTSCCCSEEESS----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred CCCCCCccCCeEEeCC----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence 00001111 12456677753 456666666777888888776554433221 11123578899
Q ss_pred EccCCCEEEEEe
Q 001358 630 FNKNGTLLAVIA 641 (1092)
Q Consensus 630 ~s~~~~~l~~~~ 641 (1092)
+.|||.++++..
T Consensus 330 ~~pdG~lyv~td 341 (353)
T 2g8s_A 330 TGPDGYLYVLTD 341 (353)
T ss_dssp ECTTSCEEEEEC
T ss_pred ECCCCcEEEEEe
Confidence 999998666543
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.82 E-value=0.075 Score=56.41 Aligned_cols=235 Identities=8% Similarity=-0.027 Sum_probs=118.6
Q ss_pred CEEEEEeC--CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC----CcEEEEECCCCceeEEEe
Q 001358 409 SLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 409 ~~las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~ 482 (1092)
.+++.|+. ...+.+||..+++-.. ...+......-..+ .-+++ +++.|+.+ ..+.+||+.+++-...-.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~--~~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACV--FWDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEEE--EETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEEE--EECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 34555553 3468899988754211 11111111111122 23555 66677654 578899988876433221
Q ss_pred cCC--cceEEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCC-
Q 001358 483 GHG--APVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG- 553 (1092)
Q Consensus 483 ~~~--~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~- 553 (1092)
... .....+.+ ++.+++.|+.+ ..+.+||..+..-...-..+.......+..-+++.++.++.....
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNV 163 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTT
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCC
Confidence 111 11111222 45677777765 357888877654322211111111111223466766766653332
Q ss_pred ----ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCCCCCCC
Q 001358 554 ----ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPE 624 (1092)
Q Consensus 554 ----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 624 (1092)
...+.+||+.+.+-...-.... ....-..+.+ ++..++.|+.+ ..+.+||..+.+....-........
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT 240 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred cccccceEEEeCCCCCeEEECCCccc-hhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence 3558999998876543322111 1112222222 45556666543 4688999988765443222221111
Q ss_pred CceEEEccCCCEEEEEeCC-----CeEEEEECCCCCee
Q 001358 625 NPRICFNKNGTLLAVIANE-----NRIKILETPESNSV 657 (1092)
Q Consensus 625 v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~ 657 (1092)
...+. -++++++.|+.+ ..+.+||..+.+..
T Consensus 241 ~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 241 VKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp CEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred eeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 22222 267788888753 56888888876433
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.80 E-value=0.13 Score=54.94 Aligned_cols=229 Identities=10% Similarity=0.072 Sum_probs=120.7
Q ss_pred eCCeEEEEEcCCceeeE-EecCCCCCeEEEEEcCCCCCEEEEEeC-----C------CeEEEEEcCCcee--eEeecccc
Q 001358 821 SGGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD-----D------STILIYNARSSEV--ISKLEGHS 886 (1092)
Q Consensus 821 sdg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~-----d------g~v~iwd~~~~~~--~~~l~~h~ 886 (1092)
++..+.+||..+.+-.. .+..+.......+... ++.+++.|+. . ..+.+||..+.+- +..+....
T Consensus 11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 89 (315)
T 4asc_A 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR 89 (315)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred cCCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence 34678999998876432 2222223333334444 6778888874 1 1378899887642 22222111
Q ss_pred CCeEEEEEcCCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-e-C
Q 001358 887 KRVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E 956 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s~s~D--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-d 956 (1092)
..-..+.+ ++++++.|+.+ ..+.+||..+.+......+.. . .....+..-++++++.| . +
T Consensus 90 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~------r~~~~~~~~~~~iyv~GG~~~ 159 (315)
T 4asc_A 90 CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY--V------VYGHTVLSHMDLVYVIGGKGS 159 (315)
T ss_dssp ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS--C------CBSCEEEEETTEEEEECCBCT
T ss_pred hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC--c------ccceeEEEECCEEEEEeCCCC
Confidence 11122222 66777777743 358899998865333221111 1 11222333566666664 3 2
Q ss_pred -----CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCC-----cEEEEECCCCceEEeeccccccCCCC
Q 001358 957 -----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQCRILSTAYLRPTT 1026 (1092)
Q Consensus 957 -----~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~ 1026 (1092)
+.+.+||..+.+-....... .......+..-++++++.|+.++ .+.+||+.+.+....- ..+..
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~- 233 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE----AFPQE- 233 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC----CCSSC-
T ss_pred CCcccceEEEEeCCCCeEEECCCCC-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECC----CCCCc-
Confidence 46999999876543321111 11111122233778888888764 4888999887554221 12211
Q ss_pred ccCcccceEEEECCCCCCEEEEEeCCC--------------cEEEEecCCCCCccccCCCCC
Q 001358 1027 SCLHVYPHAIAAHPLKPTQFAVGLTNG--------------EVYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus 1027 ~~~~v~~~~~~~~p~~~~~l~~~~~dg--------------~v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
....+++.. ++.+++.|+.++ .+.+||+ ...+|...+|..
T Consensus 234 ----r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~ 287 (315)
T 4asc_A 234 ----RSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNE--EEKKWEGVLREI 287 (315)
T ss_dssp ----CBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET--TTTEEEEEESCS
T ss_pred ----ccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecC--CCChhhhhccCC
Confidence 111122222 357888888643 3556666 455798875544
No 323
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.76 E-value=0.77 Score=48.86 Aligned_cols=99 Identities=11% Similarity=0.125 Sum_probs=58.4
Q ss_pred eeEEEEecCCCEEEEEe--CCeEEEEEcCCcee------------------eEEecCCCCCeEEEEEcCCCCCEEEEEeC
Q 001358 805 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------------ILTIMPPSPTATSLAFNPHDNNVIAIGMD 864 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~------------------~~~~~~~~~~i~~l~~s~~d~~~lasg~~ 864 (1092)
...++|.|+|.+.++-. ++.-.|--+..+.. +..+..+......++|.. +.++.....
T Consensus 204 p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l~ 281 (347)
T 3das_A 204 VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGLR 281 (347)
T ss_dssp CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEEST
T ss_pred cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeecccc
Confidence 45789999887766553 22223333332221 122222223556788874 556666666
Q ss_pred CCeEEEEEcCCcee----eEeeccccCCeEEEEEcCCCCEEEEEe
Q 001358 865 DSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSG 905 (1092)
Q Consensus 865 dg~v~iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~l~s~s 905 (1092)
.+.|....+..... ...+.+..+.+..|+..|||.++++.+
T Consensus 282 ~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 282 GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 66777777765432 233445557899999999998877654
No 324
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.76 E-value=0.089 Score=55.69 Aligned_cols=235 Identities=12% Similarity=0.036 Sum_probs=116.6
Q ss_pred CCEEEEEeCC----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC-----CcEEEEECCCCcee
Q 001358 408 GSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGSRT 478 (1092)
Q Consensus 408 g~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~~~~ 478 (1092)
+..++.|+.+ ..+..||+.+++- .....+...... .+++ .-+++ +++.|+.+ ..+.+||..+.+-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~-~~~~-~~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERW-HQVAELPSRRCR-AGMV-YMAGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEE-EEECCCSSCCBS-CEEE-EETTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcE-eEcccCCccccc-ceEE-EECCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 4455555532 3478888887532 111111111111 1222 22555 66666644 35889998877543
Q ss_pred EEE--ecCCcceEEEeecccCCccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358 479 YSF--EGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 479 ~~~--~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
..- .........+.+ ++.+++.|+.++ .+.+||+.+.+-...-..........+..-+++.++.++.+.
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 166 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDV 166 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCC
Confidence 221 111111112222 456777777654 466777765443222111111111112223667677766543
Q ss_pred CC---ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCCCCCC
Q 001358 552 EG---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 552 ~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
.. ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||..+.+....-.....
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 32 3458899998876544321111 1122222222 45666666654 4689999988766544322211
Q ss_pred CCceEEEccCCCEEEEEeCCC-----eEEEEECCCCCe
Q 001358 624 ENPRICFNKNGTLLAVIANEN-----RIKILETPESNS 656 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~ 656 (1092)
.....+..-++++++.|+.++ .+.+||..+.+.
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 112222333677778877653 478888887643
No 325
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.67 E-value=0.085 Score=56.08 Aligned_cols=236 Identities=10% Similarity=0.051 Sum_probs=122.9
Q ss_pred ecCCCEEEEEe-----CCeEEEEEcCCceeeEE--ecCCCCCeEEEEEcCCCCCEEEEEeC----C-----CeEEEEEcC
Q 001358 811 SKNDAYLFSAS-----GGVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMD----D-----STILIYNAR 874 (1092)
Q Consensus 811 s~dg~~l~~~s-----dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~----d-----g~v~iwd~~ 874 (1092)
.-++.+++.|+ -..+.+||..+.+-... +....... +++.. ++.+++.|+. + ..+.+||..
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 34566666665 14689999887653322 22111122 22222 5667777775 2 368899988
Q ss_pred Ccee--eEeeccccCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC
Q 001358 875 SSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 875 ~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 947 (1092)
+.+- +..+......-..+.+ ++++++.|+.+ ..+.+||..+.+......+ +.... -.+++ .-+
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~-----~~~~~-~~~ 168 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM--LTRRI-----GVGVA-VLN 168 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC--SSCCB-----SCEEE-EET
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC--Ccccc-----ceEEE-EEC
Confidence 7642 2222221122222333 67777777654 3588899988654332211 11111 11222 226
Q ss_pred CCEEEEE-eC-----CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEee
Q 001358 948 QTRFLLV-HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 948 g~~la~~-~d-----~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~D-----g~i~vwd~~~~~~~~~~ 1016 (1092)
+++++.| .+ +.+.+||..+.+-...-.......-.+++ .-++++++.|+.+ ..+.+||+.+.+....-
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEE-EECCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 6666663 22 45899998876543221111111111122 2377788888765 46899999887554211
Q ss_pred ccccccCCCCccCcccceEEEECCCCCCEEEEEeCCC-----cEEEEecCCCCCccccCCCC
Q 001358 1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPPD 1073 (1092)
Q Consensus 1017 ~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~~~ 1073 (1092)
..+.. ....+++.. ++.+++.|+.++ .+.+||+. ..+|...++.
T Consensus 248 ----~~p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~ 296 (308)
T 1zgk_A 248 ----PMKHR-----RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPD--TDTWSEVTRM 296 (308)
T ss_dssp ----CCSSC-----CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT--TTEEEEEEEC
T ss_pred ----CCCCC-----ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCC--CCEEeecCCC
Confidence 12211 111222222 357888887653 56777774 4568876543
No 326
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.65 E-value=1.2 Score=49.62 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=77.4
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEEcCCcee-------------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeE
Q 001358 804 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT-------------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 868 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~-------------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v 868 (1092)
..-.+.++|||+++++++ +.++.++|+..... ..... -.-.....+|.+ +|....+..-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence 345688999999999997 68899999874211 11121 234567899999 78666667789999
Q ss_pred EEEEcCCc----------eeeEeeccccCCeEEEEE------cCCCCEEEEEe---CCCc----------EEEEEcCCCc
Q 001358 869 LIYNARSS----------EVISKLEGHSKRVTGLVF------SDALNILVSSG---GDAQ----------IFVWDVDGWG 919 (1092)
Q Consensus 869 ~iwd~~~~----------~~~~~l~~h~~~V~~l~~------spdg~~l~s~s---~Dg~----------i~iwd~~~~~ 919 (1092)
.-|++... ..+.++.-|-.+- .+.- .|||++|++.. .|+- -.+.|+...+
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 99999764 3556666554422 2322 57999999874 4553 3677776654
No 327
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.62 E-value=0.18 Score=53.78 Aligned_cols=232 Identities=9% Similarity=-0.029 Sum_probs=115.4
Q ss_pred EEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC-----C------CcEEEEECCCCceeE
Q 001358 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D------KTIKVWDAVTGSRTY 479 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-----d------~~i~vwd~~~~~~~~ 479 (1092)
++.|+ ..+.+||..+++-.. ..+..........+...+++ +++.|+. . ..+.+||..+++-..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 34444 468999998865221 22222222333333445666 5666663 1 127788988776432
Q ss_pred EEecCCcceE--EEeecccCCccEEEEEecC--------CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEec
Q 001358 480 SFEGHGAPVY--SLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 480 ~~~~~~~~v~--~i~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
+.....+-. +++. . ++.+++.|+.+ ..+.+||..+.+=...-..+.......+...+++.++.++.
T Consensus 82 -~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 82 -MPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp -CCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -CCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 111111111 1111 1 44666766632 34788887765322211111111112223356666667664
Q ss_pred CC--CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCceEEEEeCCCCC
Q 001358 550 SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGL 622 (1092)
Q Consensus 550 ~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~~~ 622 (1092)
.. .....+.+||+.+.+-...-.... ......++.+ ++..++.|+.++ .+.+||+.+.+....-.....
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 233 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE- 233 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCC-chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence 21 123468999998876543221111 1112222222 556666776544 588899988766554332222
Q ss_pred CCCceEEEccCCCEEEEEeCC--------------CeEEEEECCCCCee
Q 001358 623 PENPRICFNKNGTLLAVIANE--------------NRIKILETPESNSV 657 (1092)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~d--------------g~i~iw~~~~~~~~ 657 (1092)
.....+..-++++++.|+.+ ..+.+||..+.+..
T Consensus 234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 12222223367777777753 24677888776443
No 328
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=96.48 E-value=0.0021 Score=51.36 Aligned_cols=35 Identities=34% Similarity=0.569 Sum_probs=32.5
Q ss_pred CCchhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001358 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1092)
Q Consensus 1 ~~~~~~~~~~li~q~L~~~G~~~s~~~L~~Esg~~ 35 (1092)
|+....||-.||..||+|.||..||-+|++||+|.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 78899999999999999999999999999999974
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.47 E-value=0.67 Score=49.53 Aligned_cols=189 Identities=9% Similarity=0.095 Sum_probs=110.9
Q ss_pred ceeEEEeeCCCCcEEEEEEe------------CCCcEEEEECCC--Ccee-EEEec-----CCcceEEEeecccCCc--c
Q 001358 443 NVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVT--GSRT-YSFEG-----HGAPVYSLCPHAKENI--H 500 (1092)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~~------------~d~~i~vwd~~~--~~~~-~~~~~-----~~~~v~~i~~~~~~~~--~ 500 (1092)
..-.++..|+|. .+++++ .+|.|.++|.++ ++.. ..+.+ .......+.+..+.++ .
T Consensus 51 G~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 344666778765 444442 689999999874 2321 12332 1234556666554344 3
Q ss_pred EEEEEec--CCeEEEEEcCCCCceE----EecC-CCCceEEEEEecCCCEEEEEecC-------------CCCceeEEEE
Q 001358 501 FIFSISV--DGKIKAWLYDSLGARV----DYDA-PGLGCTRMAYSANGRRLFSCGTS-------------KEGESFLVEW 560 (1092)
Q Consensus 501 ~l~s~~~--dg~i~vwd~~~~~~~~----~~~~-~~~~i~~~~~s~dg~~l~~~~~~-------------~~~~~~i~iw 560 (1092)
++++-.. +.+|.+|+++...... .+.. .-.....+.+.++|++.++.... +...+.|+.+
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 4444333 5678888877654332 2222 22357899999999977765310 1234678888
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCC-CceE--EEEeCCCCCCCCceEEEcc-CCC
Q 001358 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNK-VQLL--TTIDAGGGLPENPRICFNK-NGT 635 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~-~~~~--~~~~~~~~~~~v~~v~~s~-~~~ 635 (1092)
|.. +......+. ...+.++|+||++.++.+. ..+.|+.|++.. +... ..+... ...-.+++.+ +|+
T Consensus 209 d~~--~~~~~~~~l----~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~---g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 209 SPN--DVRVVAEGF----DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD---TLVDNISVDPVTGD 279 (355)
T ss_dssp CTT--CCEEEEEEE----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS---SEEEEEEECTTTCC
T ss_pred ECC--eEEEeecCC----cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCC---CCCceEEEeCCCCc
Confidence 763 332223332 4678999999998887765 678899999863 4332 233221 2245678888 487
Q ss_pred EEEEEeC
Q 001358 636 LLAVIAN 642 (1092)
Q Consensus 636 ~l~~~~~ 642 (1092)
+.+++..
T Consensus 280 lwva~~~ 286 (355)
T 3sre_A 280 LWVGCHP 286 (355)
T ss_dssp EEEEEES
T ss_pred EEEEecC
Confidence 7665543
No 330
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.25 E-value=0.038 Score=53.48 Aligned_cols=142 Identities=8% Similarity=-0.005 Sum_probs=80.2
Q ss_pred CCCEEEEEeCCCeEEEEEcCCcee-----eEeeccc--cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee----e
Q 001358 855 DNNVIAIGMDDSTILIYNARSSEV-----ISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT----C 923 (1092)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~~~-----~~~l~~h--~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~----~ 923 (1092)
...+|++...| +|+.=...++.. ..+-.++ =..++.++|+|+|.+.+. .+|.+.-.+..+..... .
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34567777777 666554444431 1111122 236779999999997777 66654444433211110 0
Q ss_pred eeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeec-c------CCCcCEEEEEEecCCCEEEEE
Q 001358 924 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF-P------ISSVPISQATFSCDCRMVFTS 996 (1092)
Q Consensus 924 ~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~-~------~h~~~v~~l~fs~dg~~l~t~ 996 (1092)
..+-.. +-. ...++.|.|+|.+.++ .|+.|+-++-.+.... .|+ . .--..+..|.|.|+|.+.+..
T Consensus 80 t~IG~~-Gw~----~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~-~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 80 KKIGNG-GWN----QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTD-NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp EEEECS-CGG----GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC-CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred cEeccc-ccc----cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCC-ceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 111000 100 1368999999999988 7798887775432111 111 0 112567999999999877765
Q ss_pred eCCCcEEEEECC
Q 001358 997 FVDGTLSIHEAS 1008 (1092)
Q Consensus 997 s~Dg~i~vwd~~ 1008 (1092)
|+.++-+...
T Consensus 153 --dg~lyr~~~P 162 (236)
T 1tl2_A 153 --GQQFYKALPP 162 (236)
T ss_dssp --TTEEEEECCC
T ss_pred --CCcEEecCCC
Confidence 7775544444
No 331
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.18 E-value=0.1 Score=56.18 Aligned_cols=123 Identities=15% Similarity=0.200 Sum_probs=79.3
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceee-------eeeeeeecccccceeEEeeecCCCCcEEEEEECCC-
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-------RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD- 407 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd- 407 (1092)
+|..+..||+|+ +||..+. .+|.|-.+..+..... ...+-|.+... ......+|..+.|+|-
T Consensus 67 ~i~qlvlSpsG~-lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~--------~~~~~s~I~qVlWHPl~ 136 (452)
T 3pbp_A 67 DTFHVISSTSGD-LLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE--------EVGPKSSIKKVLFHPKS 136 (452)
T ss_dssp TTCEEEECTTSS-EEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC--------C--CCCCEEEEEECTTB
T ss_pred ceeEEEECCCCC-EEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCc--------ccCCCCceeEEEecccc
Confidence 788999999999 5555433 6899988874432221 11112222110 0114678999999994
Q ss_pred --CCEEEEEeCCCEEEEEEccCCCCccceEEec---------ccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358 408 --GSLLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 408 --g~~las~~~d~~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
|..|++-..|++|++||+....... . .+. .....|.+++|.+++-++++++....|.|+-.
T Consensus 137 ~~ds~LVVLtsD~~Ir~yDl~~s~~~P-~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 137 YRDSCIVVLKEDDTITMFDILNSQEKP-I-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp GGGCEEEEEETTSCEEEEETTCTTSCC-E-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred CCCCeEEEEecCCEEEEEEcccCCCCC-c-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 5689999999999999998633211 1 222 22356888899888776666666666766554
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.08 E-value=0.31 Score=60.66 Aligned_cols=233 Identities=13% Similarity=0.119 Sum_probs=140.0
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeeEeeccc
Q 001358 807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 885 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 885 (1092)
+.-.+|..+.+|.-.+.++.|+|+++...+..+.- ...|.-=.|-. .+.|+..+ +..|+-|++.. ..++..+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 45578888888888888999999998877766553 33565556654 34555444 56799999974 3455555545
Q ss_pred ----cCCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEE--ec-CCCEE
Q 001358 886 ----SKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF--HK-DQTRF 951 (1092)
Q Consensus 886 ----~~~V~~l~~spdg~~l~s~s~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--s~-dg~~l 951 (1092)
...|..-.-+++.++++..|- .|.+.+|+++.+. -+..+||.. ....+.+ ++ ....+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~---~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA---SFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHh---hhheeccCCCCCCceEE
Confidence 456777888899999886543 4788999988743 344455543 1111111 11 12222
Q ss_pred EEEe----CCcEEEEEcCCc---ee------eeeeccC--CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEee
Q 001358 952 LLVH----ETHLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 952 a~~~----d~~v~lwd~~~~---~~------~~~~~~~--h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
+.+. .++++|.++... .. +..+++. -..-..++..|+.-..+...+.-|.|.++|+.+|..+.+-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 2232 267888887542 11 1111111 1444556677776677888888999999999999887544
Q ss_pred ccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001358 1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 1017 ~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
+. ++..|... +.+.. ..-++.....|.|.--.+.+.
T Consensus 297 ri--------s~~~iF~~--~~~~~-~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 297 RI--------SGETIFVT--APHEA-TAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred cc--------cCCceEEe--ccCCC-CCceEEEcCCceEEEEEEccc
Confidence 41 12233322 22322 233555557777766665443
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.01 E-value=0.43 Score=51.73 Aligned_cols=239 Identities=12% Similarity=0.069 Sum_probs=117.3
Q ss_pred cCCCEEEEEe--CCeEEEEEcCC----ceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeC-C---------CeEEEEEcC
Q 001358 812 KNDAYLFSAS--GGVISLYIVMT----FKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD-D---------STILIYNAR 874 (1092)
Q Consensus 812 ~dg~~l~~~s--dg~i~iwd~~~----~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~-d---------g~v~iwd~~ 874 (1092)
-++++++.|+ ...+.+||..+ ++.+..+. .......++.+ ++++++.|+. + ..+.+||..
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 3677777775 36799999863 33333332 11222223333 5677777776 2 468999998
Q ss_pred Ccee--eEeec-cccCCeEEEEEcCCCCEEEEEeCC---------------------------------------CcEEE
Q 001358 875 SSEV--ISKLE-GHSKRVTGLVFSDALNILVSSGGD---------------------------------------AQIFV 912 (1092)
Q Consensus 875 ~~~~--~~~l~-~h~~~V~~l~~spdg~~l~s~s~D---------------------------------------g~i~i 912 (1092)
+.+- +..+. .....-.++. .++++++.|+.+ ..+.+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred CCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence 7642 22222 1111122222 577888888865 46889
Q ss_pred EEcCCCceeeeeeeecCCCCcCCCCCc-eEEEEecCCCEEEEE-e------CCcEEEEEc--CCceeeeee-ccCCCcCE
Q 001358 913 WDVDGWGIQTCRSLQTPDGVMTLAPSE-THIQFHKDQTRFLLV-H------ETHLAIYEA--EELTCLKQW-FPISSVPI 981 (1092)
Q Consensus 913 wd~~~~~~~~~~~~~~~~~~~~~~~~v-~~l~~s~dg~~la~~-~------d~~v~lwd~--~~~~~~~~~-~~~h~~~v 981 (1092)
||..+.+......+.... .- .+++. -++++++.+ . ...+..||+ .+.+-.... ........
T Consensus 173 yd~~~~~W~~~~~~p~~~-------~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 173 FDPSTQQWSYAGESPWYG-------TAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244 (357)
T ss_dssp EETTTTEEEEEEECSSCC-------CBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred EeCCCCcEEECCCCCCCC-------cccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence 999886644422211111 11 22222 356666653 2 235777876 443322211 11111111
Q ss_pred EEEEEecCCCEEEEEeCC----------------------CcEEEEECCCCceEEeeccccccCCCCccCcccceEEEEC
Q 001358 982 SQATFSCDCRMVFTSFVD----------------------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1039 (1092)
Q Consensus 982 ~~l~fs~dg~~l~t~s~D----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1039 (1092)
...+...++++++.|+.+ ..+.+||+.+.+.... ...+.. .....++..
T Consensus 245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~----r~~~~~~~~- 315 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS----GELSQG----RAYGVSLPW- 315 (357)
T ss_dssp SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE----EECSSC----CBSSEEEEE-
T ss_pred cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC----CCCCCC----cccceeEEe-
Confidence 222334577788877742 2578899987755432 122222 111122333
Q ss_pred CCCCCEEEEEeCCC------cEEEEecCCCCCccccCCCCCcc
Q 001358 1040 PLKPTQFAVGLTNG------EVYVIEPNEPGDTWAVLPPDEIV 1076 (1092)
Q Consensus 1040 p~~~~~l~~~~~dg------~v~~w~~~~~~~~~~~~~~~~~~ 1076 (1092)
++.+++.|+.++ .|.++++ ...+|....|...+
T Consensus 316 --~~~i~v~GG~~~~~~~~~~v~~l~~--~~~~~~~~~~~~~~ 354 (357)
T 2uvk_A 316 --NNSLLIIGGETAGGKAVTDSVLITV--KDNKVTVQNLEHHH 354 (357)
T ss_dssp --TTEEEEEEEECGGGCEEEEEEEEEC---CCSCEEEC-----
T ss_pred --CCEEEEEeeeCCCCCEeeeEEEEEE--cCcEeEeeeccccc
Confidence 368889999764 2334455 55668877776643
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.05 Score=57.72 Aligned_cols=198 Identities=9% Similarity=0.040 Sum_probs=110.0
Q ss_pred CEEEEEeCCCeEEEEEcCCceeeEeeccc-cCCeEEEEE--cC-CCCEEEEE-eCCCcEEEEEcCCCceeeeeeeecCCC
Q 001358 857 NVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVF--SD-ALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDG 931 (1092)
Q Consensus 857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~--sp-dg~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~ 931 (1092)
.++++++.||.|+-.|..+|+.+.+++.. ..++....- .+ ++..++.. +.||.|..++..+|.......+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999888754 123322110 01 23334333 589999999988874332111111111
Q ss_pred CcCCCCCceEEEE------------ecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcC------EEEEEEe-----c
Q 001358 932 VMTLAPSETHIQF------------HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP------ISQATFS-----C 988 (1092)
Q Consensus 932 ~~~~~~~v~~l~~------------s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~------v~~l~fs-----~ 988 (1092)
. .-+.. +.+|..++.+.++++.-.|+.+|+.+..+..+.... ..|.... .
T Consensus 91 ~-------SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 91 T-------SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp T-------CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred c-------cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 0 00121 244544444789999999999999998765442111 1111111 1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCcc
Q 001358 989 DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1067 (1092)
Q Consensus 989 dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~ 1067 (1092)
.+..|+.+..+..+.+.+ .+|+ ...+....+.+.... ..+.. ....+. |+.. ++++.||.|..+|.......|
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~-~~~~~-~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD-VPLAL-QNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT-HHHHT-TCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccc-ccccc-cccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 245777788888888777 5564 433333333332200 00000 000011 3344 557888999888888777778
No 335
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.95 E-value=0.24 Score=52.48 Aligned_cols=238 Identities=6% Similarity=-0.053 Sum_probs=117.5
Q ss_pred CCCCCEEEEEeCC----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC----C-----CcEEEEE
Q 001358 405 SPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----D-----KTIKVWD 471 (1092)
Q Consensus 405 spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~----d-----~~i~vwd 471 (1092)
.-++..++.|+.+ ..+.+||..+++-... ..+......- +++ .-+++ +++.|+. + ..+.+||
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~-~~~-~~~~~--lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL-ADLQVPRSGL-AGC-VVGGL--LYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEEC-CCCSSCCBSC-EEE-EETTE--EEEECCEEEETTEEEECCCEEEEE
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeEC-CCCCcccccc-eEE-EECCE--EEEECCCcCCCCCCeecceEEEEC
Confidence 3466777777632 3588999887542211 0111111111 222 22555 5666664 2 4688999
Q ss_pred CCCCceeEE--EecCCcceEEEeecccCCccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEE
Q 001358 472 AVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1092)
Q Consensus 472 ~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 544 (1092)
+.+.+-... +.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-..+.......+..-+++.+
T Consensus 97 ~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 172 (308)
T 1zgk_A 97 PMTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLY 172 (308)
T ss_dssp TTTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred CCCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEE
Confidence 887754321 1111111112222 45667776644 357778876644222111111111111122266667
Q ss_pred EEEecCCCC-ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeC
Q 001358 545 FSCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 545 ~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~ 618 (1092)
+.++.++.. ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+....-..
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 776654322 3558999998876543221111 1122222333 55566666654 5689999988765543222
Q ss_pred CCCCCCCceEEEccCCCEEEEEeCC-----CeEEEEECCCCCe
Q 001358 619 GGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESNS 656 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~ 656 (1092)
... .....+..-++++++.|+.+ ..+.+||..+.+.
T Consensus 250 p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 250 KHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp SSC--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CCC--ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 211 11122222367777777643 4577888876643
No 336
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.87 E-value=0.71 Score=49.03 Aligned_cols=227 Identities=10% Similarity=0.001 Sum_probs=110.7
Q ss_pred EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC----CC-------cEEEEECCCCceeEE--EecCC
Q 001358 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DK-------TIKVWDAVTGSRTYS--FEGHG 485 (1092)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~----d~-------~i~vwd~~~~~~~~~--~~~~~ 485 (1092)
.+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++-... +....
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 37889988765322 12221112222333345666 6677773 11 177888877754321 11111
Q ss_pred cceEEEeecccCCccEEEEEecC-------CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCC--Ccee
Q 001358 486 APVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESF 556 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~--~~~~ 556 (1092)
.....+.+ ++.+++.|+.+ ..+.+||..+.+-...-..+.......+...+++.++.++.... ....
T Consensus 101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 11111112 45677777754 24677777654322221112111111222356777676664221 1345
Q ss_pred EEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
+.+||+.+.+-...-.... ......++.+ ++..++.|+.+ ..+.+||+.+.+....-..+.. .....+..
T Consensus 177 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~ 251 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKT-PRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVS 251 (318)
T ss_dssp EEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEE
T ss_pred EEEEcCCCCEEEECCCCCC-CcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEE
Confidence 8999998876543321111 1112222222 45666666533 3577899988765543222211 11222233
Q ss_pred cCCCEEEEEeCC--------------CeEEEEECCCCCeee
Q 001358 632 KNGTLLAVIANE--------------NRIKILETPESNSVD 658 (1092)
Q Consensus 632 ~~~~~l~~~~~d--------------g~i~iw~~~~~~~~~ 658 (1092)
-++++++.|+.+ ..+.+||..+.+...
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 457777777653 357788887765443
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.85 E-value=0.089 Score=50.98 Aligned_cols=149 Identities=9% Similarity=0.027 Sum_probs=85.6
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee------eEeec--cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001358 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV------ISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~------~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~ 916 (1092)
.++.++|+| ++.+.++ .+|.++-.+..++.. -..+- +-.. -.++.|.|+|.+.++ .||.|.-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 667999999 8887776 678777766654221 11110 1112 478999999999888 56888777653
Q ss_pred CCceeeee--eeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceee-----eeecc-CCCcCEEEEEEec
Q 001358 917 GWGIQTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL-----KQWFP-ISSVPISQATFSC 988 (1092)
Q Consensus 917 ~~~~~~~~--~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~-----~~~~~-~h~~~v~~l~fs~ 988 (1092)
+....... ......+... .+..|.|.|+|.+-++. |+.++-....++... ...+. .....-..+.|++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~---~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWS---GFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGG---GEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred cCCCCceeccccEeccCCCC---ceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 32211100 0001111111 47899999999999998 888654333322100 01111 2233444577899
Q ss_pred CCCEEEEEeCCCcEEEEEC
Q 001358 989 DCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 989 dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
+|...++. +| ++|..
T Consensus 192 ~G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 192 VGTLFGVQ--GG--KFYED 206 (236)
T ss_dssp TSCEEEEE--TT--EEEEE
T ss_pred CCcEEEEe--CC--eEEec
Confidence 98777655 66 44443
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.53 E-value=0.92 Score=48.13 Aligned_cols=224 Identities=14% Similarity=0.119 Sum_probs=115.6
Q ss_pred CeEEEEEcCCceeeE-EecCCCCCeEEEEEcCCCCCEEEEEeC----CC-------eEEEEEcCCceee--EeeccccCC
Q 001358 823 GVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD----DS-------TILIYNARSSEVI--SKLEGHSKR 888 (1092)
Q Consensus 823 g~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~----dg-------~v~iwd~~~~~~~--~~l~~h~~~ 888 (1092)
..+..||..+.+-.. .+..........+... ++.+++.|+. ++ .+.+||..+.+-. ..+......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 458899988776433 2222222233333444 6778888883 12 2778888776432 222221111
Q ss_pred eEEEEEcCCCCEEEEEeCC-------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-e-C---
Q 001358 889 VTGLVFSDALNILVSSGGD-------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E--- 956 (1092)
Q Consensus 889 V~~l~~spdg~~l~s~s~D-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-d--- 956 (1092)
-..+.+ ++++++.|+.+ ..+.+||..+.+......+ +... ....+...++++++.| . +
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r------~~~~~~~~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL--PIKV------YGHNVISHNGMIYCLGGKTDDKK 172 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC--SSCE------ESCEEEEETTEEEEECCEESSSC
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC--CCcc------cccEEEEECCEEEEEcCCCCCCC
Confidence 222222 67788888764 2478888887654332111 1111 1112223567766663 2 1
Q ss_pred --CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEeeccccccCCCCccC
Q 001358 957 --THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCL 1029 (1092)
Q Consensus 957 --~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1092)
+.+.+||..+.+-...-.......-.++ ..-+++.++.|+.+ ..+.+||+.+.+.... ...|..
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~---- 243 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGV-AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM----TEFPQE---- 243 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC----CCCSSC----
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccceE-EEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC----CCCCCc----
Confidence 3599999987754332111111111122 22377888888754 3477899888765422 112221
Q ss_pred cccceEEEECCCCCCEEEEEeCC--------------CcEEEEecCCCCCccccCC
Q 001358 1030 HVYPHAIAAHPLKPTQFAVGLTN--------------GEVYVIEPNEPGDTWAVLP 1071 (1092)
Q Consensus 1030 ~v~~~~~~~~p~~~~~l~~~~~d--------------g~v~~w~~~~~~~~~~~~~ 1071 (1092)
....+++.. ++.+++.|+.+ ..+.+||+ ...+|....
T Consensus 244 -r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~ 294 (318)
T 2woz_A 244 -RSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED--DKKEWAGML 294 (318)
T ss_dssp -CBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEET--TTTEEEEEE
T ss_pred -ccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeC--CCCEehhhc
Confidence 111122222 35778887764 34667777 445698763
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.51 E-value=0.43 Score=59.44 Aligned_cols=236 Identities=12% Similarity=0.114 Sum_probs=135.0
Q ss_pred ecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEE
Q 001358 342 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 421 (1092)
Q Consensus 342 ~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~ 421 (1092)
.+|..+ ++|.-. ..++.|+|+++...+..+.+ ..+|..=.|-.+..+-+++ +..|.
T Consensus 73 MnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~~l~lVT--~~aVy 128 (1630)
T 1xi4_A 73 MNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNTVALVT--DNAVY 128 (1630)
T ss_pred cCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCCeeEEEc--CCeEE
Confidence 466666 566543 57899999999887765332 2467777787555443333 34599
Q ss_pred EEEccCCCCccceEEeccc----ccceeEEEeeCCCCcEEEEEEe------CCCcEEEEECCCCceeEEEecCCcceEEE
Q 001358 422 LYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 422 iwd~~~~~~~~~~~~l~~h----~~~v~~~~~s~d~~~l~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
-|++.+...... .+..| ...|..-..+++.+++ +++|= -.|.+.+|..+.+. .+.+.||.+....+
T Consensus 129 HW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~ 204 (1630)
T 1xi4_A 129 HWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQF 204 (1630)
T ss_pred EeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhhee
Confidence 999975432221 22233 3457777888999963 33332 45788899866543 45566777665555
Q ss_pred eecccCCccEEEE-Eec---CCeEEEEEcCCC---CceE-----EecCC----CCceEEEEEecCCCEEEEEecCCCCce
Q 001358 492 CPHAKENIHFIFS-ISV---DGKIKAWLYDSL---GARV-----DYDAP----GLGCTRMAYSANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 492 ~~~~~~~~~~l~s-~~~---dg~i~vwd~~~~---~~~~-----~~~~~----~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1092)
.+...+....+++ +.. .+.++|-++... .... .+..+ ..-..++..++.-..+...+. .|
T Consensus 205 ~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~G 280 (1630)
T 1xi4_A 205 KMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----YG 280 (1630)
T ss_pred ccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----Cc
Confidence 4432222222333 222 268899888653 1111 11111 112235666666666665553 67
Q ss_pred eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 001358 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1092)
.+.++|+.||.++..-+-.. .+|...+......-+++....|.|.--.+.....
T Consensus 281 ~~~~~d~~t~~~i~~~ris~---~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 281 YIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred eEEEEecccchhhhhccccC---CceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 89999999998875544333 4555444444444455555666665555544443
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.35 E-value=1.6 Score=48.87 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=63.2
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc--CCCCCceEEEEecC---CCEEEE--Ee---
Q 001358 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM--TLAPSETHIQFHKD---QTRFLL--VH--- 955 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~s~d---g~~la~--~~--- 955 (1092)
-...+.|+|.|||+++++-...+.|++++..++.... ......... ........++|+|| +..|.+ +.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 3457799999999988865444568888765544322 111111110 01135779999996 555554 22
Q ss_pred ---------CCcEEEEEcCCc-------eeeee-eccCCCcCEEEEEEecCCCEEEEEeC
Q 001358 956 ---------ETHLAIYEAEEL-------TCLKQ-WFPISSVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 956 ---------d~~v~lwd~~~~-------~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~s~ 998 (1092)
...|.-|+...+ +.+.. +..........|+|.|||.+.++.+.
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 134555555321 11111 11122235788999999998777654
No 341
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.25 E-value=3.8 Score=43.51 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=70.9
Q ss_pred ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
....++...-...+.++|.|||+ ++++-...|.|++++..++.......+. .+..........|+|
T Consensus 22 ~~~~~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~-------------~v~~~g~~GllGia~ 87 (347)
T 3das_A 22 KVLRTVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVP-------------GVSPSGEGGLLGIAL 87 (347)
T ss_dssp EEEEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECT-------------TCCCBTTBSEEEEEE
T ss_pred ceeEEeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccC-------------ceeecCCCCceeeEe
Confidence 34445555555889999999998 6777655799999987666532110000 012234567889999
Q ss_pred CCC---CCEEEEE-e--CCCEEEEEEccCCC----Cc---cceE-Eec-ccccceeEEEeeCCCCcEEEEEEe
Q 001358 405 SPD---GSLLGVA-Y--SKHIVQLYAYHGGS----DA---RQQL-EID-AHVGNVNDLAFSAPCKQISVITCG 462 (1092)
Q Consensus 405 spd---g~~las~-~--~d~~i~iwd~~~~~----~~---~~~~-~l~-~h~~~v~~~~~s~d~~~l~l~s~~ 462 (1092)
+|| +.+|.+. + .++.|.-|.+..+. .+ +.+. .+. +....-..++|.|||. ++++.+
T Consensus 88 ~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 88 SPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp CTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred ccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 996 4445443 2 34567677766521 11 1111 121 1112346799999997 555543
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.03 E-value=1.2 Score=48.08 Aligned_cols=141 Identities=6% Similarity=-0.042 Sum_probs=67.5
Q ss_pred CeEEEEEcCCce--eeEeecc-ccCCeEEEEEcCCCCEEEEEeCC------CcEEEEEc--CCCceeeeeeeecCCCCcC
Q 001358 866 STILIYNARSSE--VISKLEG-HSKRVTGLVFSDALNILVSSGGD------AQIFVWDV--DGWGIQTCRSLQTPDGVMT 934 (1092)
Q Consensus 866 g~v~iwd~~~~~--~~~~l~~-h~~~V~~l~~spdg~~l~s~s~D------g~i~iwd~--~~~~~~~~~~~~~~~~~~~ 934 (1092)
..+.+||..+.+ .+..+.. ....- +++. -++++++.|+.+ ..+.++|+ .+.+.. .+.......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~-~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~---~~~~~~~~~- 241 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGA-AVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN---KLAPVSSPD- 241 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSC-EEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEE---ECCCSSTTT-
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccc-cEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEE---ecCCCCCCc-
Confidence 478999998764 3333321 11111 2222 256777777642 35777877 443322 222211110
Q ss_pred CCCCceEEEEecCCCEEEEE-eC----------------------CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC
Q 001358 935 LAPSETHIQFHKDQTRFLLV-HE----------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR 991 (1092)
Q Consensus 935 ~~~~v~~l~~s~dg~~la~~-~d----------------------~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~ 991 (1092)
......+...++++++.+ .+ ..+.+||..+.+-...-... ..+....+...+++
T Consensus 242 --~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~ 318 (357)
T 2uvk_A 242 --GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS-QGRAYGVSLPWNNS 318 (357)
T ss_dssp --CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS-SCCBSSEEEEETTE
T ss_pred --ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCC-CCcccceeEEeCCE
Confidence 112223444566766663 21 24788998866533221111 11111223445888
Q ss_pred EEEEEeCCC------cEEEEECCCCceEEe
Q 001358 992 MVFTSFVDG------TLSIHEASNLEVQCR 1015 (1092)
Q Consensus 992 ~l~t~s~Dg------~i~vwd~~~~~~~~~ 1015 (1092)
+++.|+.++ .|.++++++++....
T Consensus 319 i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 319 LLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred EEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 888898653 355668888877633
No 343
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.70 E-value=2.8 Score=46.79 Aligned_cols=163 Identities=12% Similarity=0.087 Sum_probs=90.7
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee--eEeecc------ccCCeEEEEEcCC----CCEEEEEeC-----
Q 001358 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEG------HSKRVTGLVFSDA----LNILVSSGG----- 906 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~------h~~~V~~l~~spd----g~~l~s~s~----- 906 (1092)
.....++|.| +++++++-...+.|++++..+++. +..+.. ..+....|+|+|| +.+.++-+.
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999 888777544445798888765543 222321 2456789999995 444444432
Q ss_pred -------CCcEEEEEcCCC--ceeee-eeeecCCCCcCCCCCceEEEEecCCCEEEEEeCC-------------------
Q 001358 907 -------DAQIFVWDVDGW--GIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET------------------- 957 (1092)
Q Consensus 907 -------Dg~i~iwd~~~~--~~~~~-~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~------------------- 957 (1092)
...|.-+++..+ ..... .++........ .....++|.|||.+.++..|+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~--H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~ 183 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD--HQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPT 183 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS--CCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC--CCCCeEeECCCCeEEEEECCCCCCCccccccccccccccc
Confidence 234555655432 11111 12221111111 246899999999988773221
Q ss_pred ------------cEEEEEcC-Cce-----------eeeeeccCCCcCEEEEEEecCCCEEEEE-eCCCcEEEEECCCC
Q 001358 958 ------------HLAIYEAE-ELT-----------CLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1010 (1092)
Q Consensus 958 ------------~v~lwd~~-~~~-----------~~~~~~~~h~~~v~~l~fs~dg~~l~t~-s~Dg~i~vwd~~~~ 1010 (1092)
.=+|+.+. .+. ....+..+| .....++|.++|++.++- +.++.-.|.-+..|
T Consensus 184 ~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G 260 (454)
T 1cru_A 184 QQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKG 260 (454)
T ss_dssp HHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred cccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecCC
Confidence 11344332 222 122333344 457789999998866653 34555566666554
No 344
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.70 E-value=4.9 Score=41.92 Aligned_cols=183 Identities=10% Similarity=0.059 Sum_probs=101.3
Q ss_pred EEeecCCCceEEEEEcCc-------------CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358 339 SMDFHPVQHTLLLVGTNV-------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 339 ~v~~spdg~~llasg~~d-------------~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
+--++++|.++..+...+ ..|+..+++.++... +... . +.+|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~--~--~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD--P--CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS--C--EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC--C--ccEEE
Confidence 345688998766665543 356777777665332 1111 1 23778
Q ss_pred CCCCEEEEEe--C--CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001358 406 PDGSLLGVAY--S--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1092)
Q Consensus 406 pdg~~las~~--~--d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~ 481 (1092)
+++++|+... . ...|..-++.+.. .. .+..+.. .+|+++++. +..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999876 2 3355555665432 22 2333332 467889985 2333334678888887776544333
Q ss_pred ecCCcceEEEeecccCCccEEEEEecC--CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358 482 EGHGAPVYSLCPHAKENIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.+ ... ..+. |++.+|+-.... ..|..-+++...... +.. ..+ ..++|++++|+.+.... ...|..
T Consensus 184 ~~---~~~-~~~~--P~g~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt~--~~~--~~~~~~g~~Iy~~~~~~--~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVV--LDDTNVYYMDVNRDNAIVHVNINNPNPVV-LTE--ANI--EHYNVYGSLIFYQRGGD--NPALCV 250 (302)
T ss_dssp CS---CEE-EEEE--EETTEEEEEEGGGTTEEEEECSSSCCCEE-CSC--SCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred CC---Ccc-ceee--ecCCEEEEEEcCCCcEEEEEECCCCCeEE-EeC--CCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence 32 222 2233 344566655443 245555665544332 222 222 34889999998764321 356777
Q ss_pred EeCCCCeE
Q 001358 560 WNESEGAI 567 (1092)
Q Consensus 560 wd~~~~~~ 567 (1092)
-++.....
T Consensus 251 ~~~DG~~r 258 (302)
T 3s25_A 251 VKNDGTGF 258 (302)
T ss_dssp EETTSCCC
T ss_pred EECCCCcc
Confidence 77765443
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.60 E-value=3.3 Score=46.18 Aligned_cols=195 Identities=11% Similarity=0.099 Sum_probs=116.9
Q ss_pred cCCCEEEEEe--CCeEEEEEcCCceeeEEecCC-CCCeEEEEEc--CCCCCEEEEEeCC-------CeE-----------
Q 001358 812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAFN--PHDNNVIAIGMDD-------STI----------- 868 (1092)
Q Consensus 812 ~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s--~~d~~~lasg~~d-------g~v----------- 868 (1092)
.||+||..-. +.+|...++...++-+.+.-+ ...+..+.|- | +..|++.+++. |..
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 4789998887 477989999988876665533 3577788876 6 66677776542 221
Q ss_pred -EEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEEcCC-------Cceee---
Q 001358 869 -LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDVDG-------WGIQT--- 922 (1092)
Q Consensus 869 -~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg---------------~i~iwd~~~-------~~~~~--- 922 (1092)
...|..+.+...++.- .+....+...++|++.++.+... -+.++++.. |+...
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 1123333333333221 22333455678888888776542 255555421 11110
Q ss_pred --eeeeecCC----CC-----cCCCCCceEEEEecCCCEEEEE--eCCcEEEEEcCCcee-------------eeeeccC
Q 001358 923 --CRSLQTPD----GV-----MTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC-------------LKQWFPI 976 (1092)
Q Consensus 923 --~~~~~~~~----~~-----~~~~~~v~~l~~s~dg~~la~~--~d~~v~lwd~~~~~~-------------~~~~~~~ 976 (1092)
..++.... +. .+.......+.++|||++++++ -+.++.++|++.... .... .
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~--e 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP--E 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC--B
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec--c
Confidence 11111111 00 0111345679999999999995 567899999974321 1111 1
Q ss_pred CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001358 977 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 977 h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~ 1010 (1092)
-.......+|.++|.-..|-.-|..|.-|++...
T Consensus 376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 2567788999999955556668999999999764
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.46 E-value=0.095 Score=55.57 Aligned_cols=194 Identities=10% Similarity=0.043 Sum_probs=104.7
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecC-CcceEEEe-ecccCCccEEEEE-ecCCeEEEEEcCCCCceEEecCC----C
Q 001358 457 SVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLC-PHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAP----G 529 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~i~-~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~----~ 529 (1092)
+++.++.||.|.-.|.++|+.+.++... ..++.... .....++..++.. +.||.|..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 5788999999999999999999988754 12332221 1111133344443 68999999988776444332211 1
Q ss_pred CceEE---EEE-----ecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCc-----eEEEEEc-----CCCC
Q 001358 530 LGCTR---MAY-----SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS-----VSVVHFD-----TAKD 591 (1092)
Q Consensus 530 ~~i~~---~~~-----s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~-----v~~~~~~-----~~~~ 591 (1092)
.++.. ..+ +..+..+++++. ++.++..|..+|+.+..+..... ... ..+.... ..+.
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSK-NGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCB-CC--------------------CC
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCC-cccccccccccccccccccccCCC
Confidence 11111 000 014456666665 77899999999999988864321 010 0011110 1235
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeCCCC-CCCCc-----eEEEccCCCEEEEEeCCCeEEEEECCCCCeee
Q 001358 592 QILAAGDDHVIKIWDMNKVQLLTTIDAGGG-LPENP-----RICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1092)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~-----~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1092)
.++.+..+..+.+.+ ++|+ ...+..... ...+. .-..+.|+.+ ++++.||.|.-+|..++..+.
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777777777766 3443 211110000 00000 0001234555 557889999999988887654
No 347
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=94.17 E-value=0.037 Score=43.97 Aligned_cols=55 Identities=18% Similarity=0.376 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhcc
Q 001358 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSS 59 (1092)
Q Consensus 5 ~~~~~~li~q~L~~~G~~~s~~~L~~Esg~~~~--~~~~~~~i~~G~w~~~~~~l~~ 59 (1092)
++|+-+=|++||..+||.+++.+|.+|.+++.+ ...=....|+=+|..++.+=++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK 66 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 66 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 578999999999999999999999999998774 2223566777788877776443
No 348
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=93.80 E-value=9.3 Score=41.68 Aligned_cols=260 Identities=12% Similarity=0.065 Sum_probs=123.4
Q ss_pred CCCeeEEEEec--CCCEEEEEeCC----eEEEEEcCCceeeEEec------C--------CCCCeEEEEEcCCC-CCEEE
Q 001358 802 QEAVPCFALSK--NDAYLFSASGG----VISLYIVMTFKTILTIM------P--------PSPTATSLAFNPHD-NNVIA 860 (1092)
Q Consensus 802 ~~~v~~~~~s~--dg~~l~~~sdg----~i~iwd~~~~~~~~~~~------~--------~~~~i~~l~~s~~d-~~~la 860 (1092)
...|.++++.| ++.+++.+..| .|... ...++.-..+. . ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45688999998 66666666554 33332 12222212211 1 11247789998733 44556
Q ss_pred EEeCCCeEEEEEcCCceeeEeecc-------------------ccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCce
Q 001358 861 IGMDDSTILIYNARSSEVISKLEG-------------------HSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGI 920 (1092)
Q Consensus 861 sg~~dg~v~iwd~~~~~~~~~l~~-------------------h~~~V~~l~~spd-g~~l~s~s~Dg~i~iwd~~~~~~ 920 (1092)
++...+.|...+ +.|+.-..+.. ....|.+|.+.|. ...|..+..++.|...+-....
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~t- 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTD- 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSS-
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCC-
Confidence 566566555442 22222111110 1235789999873 3444444444434433222211
Q ss_pred eeeeeeec-CCC-Cc-----CCCCCceEEEEecC-CCEEEEEeCCcEEEEEcCCceeeeeeccCC-C---cCEEEEEEec
Q 001358 921 QTCRSLQT-PDG-VM-----TLAPSETHIQFHKD-QTRFLLVHETHLAIYEAEELTCLKQWFPIS-S---VPISQATFSC 988 (1092)
Q Consensus 921 ~~~~~~~~-~~~-~~-----~~~~~v~~l~~s~d-g~~la~~~d~~v~lwd~~~~~~~~~~~~~h-~---~~v~~l~fs~ 988 (1092)
...+.. ... .. .....+.++++.|+ ...|.++..+.|...+- .++....+...- . ..+..++++|
T Consensus 211 --W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 211 --WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp --CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred --ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence 111111 000 00 00124788999986 35566665665655542 233322222111 1 3456788876
Q ss_pred -CCCEEEEEeC-----------CCcEEEEECCC-CceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcE
Q 001358 989 -DCRMVFTSFV-----------DGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1055 (1092)
Q Consensus 989 -dg~~l~t~s~-----------Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v 1055 (1092)
+...|..++. ++...+|...+ |+.-..+. .-++....-..+...+++++|.++..|.+++.++.
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~- 364 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGE- 364 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSC-
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCe-
Confidence 3333444432 33345665554 33333332 11222100011222357788865566777776665
Q ss_pred EEEecCCCCCccccCC
Q 001358 1056 YVIEPNEPGDTWAVLP 1071 (1092)
Q Consensus 1056 ~~w~~~~~~~~~~~~~ 1071 (1092)
+|.-.+.+..|....
T Consensus 365 -l~~S~D~G~tW~~~~ 379 (394)
T 3b7f_A 365 -IWASADEGEHWQCIA 379 (394)
T ss_dssp -EEEESSTTSBCEEEE
T ss_pred -EEEECCCCCCceEcc
Confidence 455556777787653
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.48 E-value=5 Score=47.75 Aligned_cols=196 Identities=10% Similarity=0.104 Sum_probs=106.7
Q ss_pred cCCCEEEEEeC-----CeEEEEEcCCceeeEEe--------cCCCCCeEEEEEcCCCCCEEEEEeCCC------eEEEEE
Q 001358 812 KNDAYLFSASG-----GVISLYIVMTFKTILTI--------MPPSPTATSLAFNPHDNNVIAIGMDDS------TILIYN 872 (1092)
Q Consensus 812 ~dg~~l~~~sd-----g~i~iwd~~~~~~~~~~--------~~~~~~i~~l~~s~~d~~~lasg~~dg------~v~iwd 872 (1092)
.++.+++.|+. +.+.+||..+.+-...- ......-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 56677776652 45889998776433222 11112334455543 466777777543 588999
Q ss_pred cCCce--eeEeeccccCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCceeeeeeee-cCCCCcCCCCCceEEEEecC
Q 001358 873 ARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQ-TPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 873 ~~~~~--~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~s~d 947 (1092)
..+.+ .+..+......- +++...++++++.||.++ .+.+||..+.......... .+.... ...++.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~----~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL----VSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCC----BSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccc----ceeEEEEeCC
Confidence 88753 222222111111 223324888999988765 6899999886533322100 111111 1234566666
Q ss_pred -CCEEEEE-e--C-----CcEEEEEcCCcee-----eeeecc--CCCcCEEEEEEecCCCEEEEEeCC--------CcEE
Q 001358 948 -QTRFLLV-H--E-----THLAIYEAEELTC-----LKQWFP--ISSVPISQATFSCDCRMVFTSFVD--------GTLS 1003 (1092)
Q Consensus 948 -g~~la~~-~--d-----~~v~lwd~~~~~~-----~~~~~~--~h~~~v~~l~fs~dg~~l~t~s~D--------g~i~ 1003 (1092)
+++++.| . + +.+.+||..+... ...... .....-.+++...++++++.||.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 5555654 2 2 3589999987761 111111 111111123333447888888743 4599
Q ss_pred EEECCCCceE
Q 001358 1004 IHEASNLEVQ 1013 (1092)
Q Consensus 1004 vwd~~~~~~~ 1013 (1092)
+||+.+....
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999988765
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.08 E-value=18 Score=40.29 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=35.9
Q ss_pred CcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCCccceEEec---------ccccceeEEEeeCC
Q 001358 397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAP 452 (1092)
Q Consensus 397 ~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~~~~s~d 452 (1092)
.....|+|.|||. .|+++...|.|++++.........+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4567899999996 55566788999999754331111111111 11456788999997
No 351
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=90.91 E-value=30 Score=40.81 Aligned_cols=246 Identities=9% Similarity=0.027 Sum_probs=123.7
Q ss_pred EEe-ecCCCceEEEEEcCcC----cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCC-----CcEEEEEECCCC
Q 001358 339 SMD-FHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-----VSVNRVVWSPDG 408 (1092)
Q Consensus 339 ~v~-~spdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-----~~V~~l~~spdg 408 (1092)
.+. ++||+++++++-|..| .++++|+.+++.+.. .|. .. ... .....++|..++
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~--------------~k~~~~~~~~~~~~~W~d~~ 196 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PI--------------TNSGKLLEGKFTYPTWINKD 196 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CB--------------CTTCCBCCEETCCEEEEETT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-cc--------------cccccccccccceeeEECCC
Confidence 344 8999997666555443 599999999976632 110 00 000 011234666333
Q ss_pred CEEEEE----------eCCCEEEEEEccCCCCccceEEecccccce-eEEEeeCCCCc---EEEEEEeCC---CcEEEEE
Q 001358 409 SLLGVA----------YSKHIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQ---ISVITCGDD---KTIKVWD 471 (1092)
Q Consensus 409 ~~las~----------~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v-~~~~~s~d~~~---l~l~s~~~d---~~i~vwd 471 (1092)
..+++. +....|+.|.+.+...-.. ..+.+....+ .....+++++. ..+++.+.+ ..+.+.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 275 (711)
T 4hvt_A 197 TIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAK-KLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILD 275 (711)
T ss_dssp EEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCE-EEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEE
T ss_pred EEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCe-EEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEc
Confidence 333321 1124688888776532221 1333333332 34556777774 235554422 3456666
Q ss_pred CCC--CceeEEEecCCcceEEEeecccCCccEEEEE----------ecCCeEEEEEcCCC-------CceEE-e-cCCCC
Q 001358 472 AVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGKIKAWLYDSL-------GARVD-Y-DAPGL 530 (1092)
Q Consensus 472 ~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~----------~~dg~i~vwd~~~~-------~~~~~-~-~~~~~ 530 (1092)
... ++ +..+....... +.. ..++.+++.. ...+.|...++... ..... + .....
T Consensus 276 ~~~~~~~-~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (711)
T 4hvt_A 276 TKYKNLK-LQKINMPSDAT--LQG--SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE 350 (711)
T ss_dssp CSSSSCE-EEECCSCTTCE--EEE--EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE
T ss_pred CCCCCCc-ceEeecCCcce--Eee--eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC
Confidence 543 33 22232111111 111 1133444422 24677888888763 12222 2 22344
Q ss_pred ceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe-EEEE-EeeccccCCceEEEEEcCCCCEEEE-Ee---CCCeEEE
Q 001358 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRT-YQGLQLQHNSVSVVHFDTAKDQILA-AG---DDHVIKI 604 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~s---~dg~i~i 604 (1092)
.+..+.+..+ ..+++... ++...++++|+.++. .... +.... .+.+......+++..++. .+ .-+.+..
T Consensus 351 ~l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~ 425 (711)
T 4hvt_A 351 VFNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTIYL 425 (711)
T ss_dssp EEEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEEEE
T ss_pred eEEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEEEE
Confidence 6777888765 34444433 446678999987775 2233 22221 145666666677655544 33 3467888
Q ss_pred EECCCCce
Q 001358 605 WDMNKVQL 612 (1092)
Q Consensus 605 wd~~~~~~ 612 (1092)
+|+. ++.
T Consensus 426 ~d~~-~~~ 432 (711)
T 4hvt_A 426 WVKT-HEL 432 (711)
T ss_dssp ECTT-SCE
T ss_pred EeCC-CcE
Confidence 8876 443
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.89 E-value=15 Score=37.78 Aligned_cols=222 Identities=13% Similarity=0.103 Sum_probs=108.6
Q ss_pred CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
.|..++....- .++. . ||.|..|-......+.. + ......|..++...+-.. +. .
T Consensus 25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-p------------------~~~~~~i~~ia~G~~hs~-~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-P------------------AATQSGVDAIAAGNYHSL-AL-K 79 (282)
T ss_dssp SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-C------------------GGGGSCCCEEEECSSEEE-EE-E
T ss_pred CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-C------------------ccCCCCEEEEEeCCCEEE-EE-E
Confidence 45666655443 2333 3 78888887665433321 0 001235666666543332 33 4
Q ss_pred CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecc
Q 001358 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
||.|..|-.....++... ..-...|..++...+-. +.-. ||.|..|-....-.+.........|..++.-
T Consensus 80 -~G~v~~wG~n~~Gqlg~P---~~~~~~v~~ia~G~~hs----~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G- 149 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVP---AEARSGVDAIAAGAWAS----YALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG- 149 (282)
T ss_dssp -TTEEEEEECCTTSTTCCC---GGGSSSEEEEEEETTEE----EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC-
T ss_pred -CCEEEEeeCCCCCCCCCC---cccCCCeEEEECcCCEE----EEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc-
Confidence 899999987654333211 11134677777665432 3334 8999999754322111111123346655532
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001358 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
....++ -. ||.+..|-.......-.-......|..++...+...++ . ++.|+.|-....-.+.. ...
T Consensus 150 --~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~-p~~- 216 (282)
T 3qhy_B 150 --VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTV-PTE- 216 (282)
T ss_dssp --SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCC-CGG-
T ss_pred --cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCC-Ccc-
Confidence 222333 33 79999996654333211111123455555443332222 2 44588886543221110 000
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001358 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1092)
....|..++..... .++.. ||.++.|-...
T Consensus 217 -~~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 217 -ALSGVSAIASGEWY--SLALK-NGKVIAWGSSR 246 (282)
T ss_dssp -GGSSCCEEEECSSC--EEEEE-TTEEEEESTTC
T ss_pred -cCCCceEEEcCCCE--EEEEE-CCEEEEecCCC
Confidence 12356666665443 33333 88999986554
No 353
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=90.52 E-value=18 Score=37.53 Aligned_cols=181 Identities=8% Similarity=0.090 Sum_probs=101.2
Q ss_pred EEECCCCCEEEEEeCC--------------CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEE--eCCC
Q 001358 402 VVWSPDGSLLGVAYSK--------------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDK 465 (1092)
Q Consensus 402 l~~spdg~~las~~~d--------------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~--~~d~ 465 (1092)
--++++|++|+.+... ..|+..++.+++... +... .+..|+++++.++++.. ....
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~----l~~~----~~~~~s~~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV----LDPD----PCIYASLIGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE----EECS----CEEEEEEETTEEEEEEESSSSCE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE----eecC----CccEEEEeCCEEEEEeecCCCCc
Confidence 3457899999887543 467777877764221 2221 12377889995333331 2344
Q ss_pred cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEE
Q 001358 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 544 (1092)
.|..-++... ....+..+.. ..+.+ +++.|+-.+. ...|.+-+++.......... ... ..+.|++.+|
T Consensus 130 ~Iy~~~~dGs-~~~~lt~~~~----~~~~~--~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~i 198 (302)
T 3s25_A 130 SLYRIRIDGE-EKKKIKNHYL----FTCNT--SDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNV 198 (302)
T ss_dssp EEEEEETTSC-CCEEEESSCC----CCSEE--ETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEE
T ss_pred eEEEEECCCC-CeEEEeCCCc----eEeeE--ECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEE
Confidence 5666666543 3444544432 23333 4455554444 56788777776554444332 222 3466999999
Q ss_pred EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCc
Q 001358 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQ 611 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~ 611 (1092)
+...... ...|..-++..+.. ..+.. ..+ ..|+|++.+|+-++. .+.|..-++....
T Consensus 199 y~t~~~~--~~~I~~~~ldG~~~-~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 199 YYMDVNR--DNAIVHVNINNPNP-VVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp EEEEGGG--TTEEEEECSSSCCC-EECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred EEEEcCC--CcEEEEEECCCCCe-EEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 8765422 24677777776553 33322 223 347888888876532 3556666665433
No 354
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.02 E-value=11 Score=44.70 Aligned_cols=201 Identities=13% Similarity=0.057 Sum_probs=102.5
Q ss_pred CCCCcEEEEEEeCC----CcEEEEECCCCceeEEE-e-----cCCcce-EEEeecccCCccEEEEEecCC------eEEE
Q 001358 451 APCKQISVITCGDD----KTIKVWDAVTGSRTYSF-E-----GHGAPV-YSLCPHAKENIHFIFSISVDG------KIKA 513 (1092)
Q Consensus 451 ~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~-~-----~~~~~v-~~i~~~~~~~~~~l~s~~~dg------~i~v 513 (1092)
.++. +++.||.+ ..+.+||..+++....- . ...... .+++.. ..++.+++.|+.++ .+.+
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~-~~~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI-SRNNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE-TTTTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE-ccCCEEEEEcCCCCCCCccccEEE
Confidence 4455 56666643 46888898877644322 1 011111 112221 11456777776543 4677
Q ss_pred EEcCCCCceEEecCCCCc-eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee--ccccCCceEEEEEcCC-
Q 001358 514 WLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTA- 589 (1092)
Q Consensus 514 wd~~~~~~~~~~~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~- 589 (1092)
||..+..-...-..+... -.+++...+++.++.||.+... .+.+||+.+..-...-.. .........++.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 777664322211111111 1223332488888888765543 799999988765433220 1101122333555555
Q ss_pred CCEEEEEeC--C-----CeEEEEECCCCc------eEEEEeCCCCCCCCceEEEccCCCEEEEEeC--------CCeEEE
Q 001358 590 KDQILAAGD--D-----HVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNKNGTLLAVIAN--------ENRIKI 648 (1092)
Q Consensus 590 ~~~l~~~s~--d-----g~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~--------dg~i~i 648 (1092)
+..++.|+. + ..+.+||+.+.. .............-..++...++++++.|+. ...+.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 555566664 2 458899998877 2222221100011123333344777777774 345888
Q ss_pred EECCCCCe
Q 001358 649 LETPESNS 656 (1092)
Q Consensus 649 w~~~~~~~ 656 (1092)
||..+.+.
T Consensus 631 yd~~t~~W 638 (695)
T 2zwa_A 631 LDPLSETL 638 (695)
T ss_dssp EETTTTEE
T ss_pred EECCCCeE
Confidence 88877643
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=89.99 E-value=22 Score=38.08 Aligned_cols=171 Identities=12% Similarity=0.084 Sum_probs=92.1
Q ss_pred cEEEEECCCC--ceeEEEecC------CcceEEEeec-ccC-----CccEEEEEecCCeEEEEEcCCCCceEEec----C
Q 001358 466 TIKVWDAVTG--SRTYSFEGH------GAPVYSLCPH-AKE-----NIHFIFSISVDGKIKAWLYDSLGARVDYD----A 527 (1092)
Q Consensus 466 ~i~vwd~~~~--~~~~~~~~~------~~~v~~i~~~-~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~ 527 (1092)
.|.+||+.++ +.++++.-. ...+..+.+. ..+ ++...++-+..+.|.|+|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 888776532 3356777776 211 22233444456789999998776544331 1
Q ss_pred C--------------CCceEEEEEecC----CCEEEEEecCCCCceeEEEEe---CCCCeEEE--EEeeccccCCceEEE
Q 001358 528 P--------------GLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWN---ESEGAIKR--TYQGLQLQHNSVSVV 584 (1092)
Q Consensus 528 ~--------------~~~i~~~~~s~d----g~~l~~~~~~~~~~~~i~iwd---~~~~~~~~--~~~~~~~~~~~v~~~ 584 (1092)
. ...+..++++|+ ++.|+.....+. .++-.. ++...... ...|.......-..+
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~---~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~ 280 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI---KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIAL 280 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS---EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC---cEEEEEHHHhhCcchhhceEEeeecCCCCCcceE
Confidence 1 126788999998 777777654321 122221 11111111 112222001233455
Q ss_pred EEc-CCCCEEEEEeCCCeEEEEECCC-C---ceEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001358 585 HFD-TAKDQILAAGDDHVIKIWDMNK-V---QLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1092)
Q Consensus 585 ~~~-~~~~~l~~~s~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1092)
++. .+|..+++--+.+.|..|+..+ . .....+...........+.+.++|.+.+.
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~ 340 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFM 340 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEE
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEE
Confidence 675 5666666667888999999875 1 22333332223334455666555544333
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=89.52 E-value=20 Score=42.29 Aligned_cols=241 Identities=9% Similarity=0.009 Sum_probs=118.4
Q ss_pred ECCCCCEEEEE-eCC----CEEEEEEccCCCCccceEEecccc-----cceeEEEeeCCCCcEEEEEE----------eC
Q 001358 404 WSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEIDAHV-----GNVNDLAFSAPCKQISVITC----------GD 463 (1092)
Q Consensus 404 ~spdg~~las~-~~d----~~i~iwd~~~~~~~~~~~~l~~h~-----~~v~~~~~s~d~~~l~l~s~----------~~ 463 (1092)
++||+++++.+ |.. ..++++|+++++.+.....-.... .....++|..++. ++++. +.
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~~~~~~~ 214 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNEITSSLY 214 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTCBCTTSS
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCE--EEEEeCCCCCCcCcCCC
Confidence 89999998876 222 369999999987553211100000 0123457874443 44432 12
Q ss_pred CCcEEEEECCCCc--eeEEEecCCcceE-EEeecccCCcc---EEEEEecC---CeEEEEEcCCCC-ceEEecCCCCceE
Q 001358 464 DKTIKVWDAVTGS--RTYSFEGHGAPVY-SLCPHAKENIH---FIFSISVD---GKIKAWLYDSLG-ARVDYDAPGLGCT 533 (1092)
Q Consensus 464 d~~i~vwd~~~~~--~~~~~~~~~~~v~-~i~~~~~~~~~---~l~s~~~d---g~i~vwd~~~~~-~~~~~~~~~~~i~ 533 (1092)
...|+.|.+-+.. -...+.+....+. +.....++... .+++.+.+ ..+.+.+.+... ....+..+...
T Consensus 215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 292 (711)
T 4hvt_A 215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA-- 292 (711)
T ss_dssp BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC--
T ss_pred CCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc--
Confidence 3468888776652 2334444444432 22222222221 35544423 335555554322 22333333221
Q ss_pred EEEEecCCCEEEEEecC------CCCceeEEEEeCCCCe-------EEEE-EeeccccCCceEEEEEcCCCCEEEEEeCC
Q 001358 534 RMAYSANGRRLFSCGTS------KEGESFLVEWNESEGA-------IKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1092)
Q Consensus 534 ~~~~s~dg~~l~~~~~~------~~~~~~i~iwd~~~~~-------~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 599 (1092)
.+..+.++.+++....+ .-..+.|...|+.++. ..+. +.... ...+..+.+..+ ..+++...+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~-~l~~~~~~~ 369 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA--NEVFNFISTTKD-RVFLATYDN 369 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT--TEEEEEEEECSS-CEEEEEEET
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC--CCeEEEEEEECC-EEEEEEEEC
Confidence 13345566665543221 0125568888887642 1222 32222 346778888875 566666666
Q ss_pred Ce--EEEEECCCCc-eEEE-EeCCCCCCCCceEEEccCCCEE-EEEeC---CCeEEEEECC
Q 001358 600 HV--IKIWDMNKVQ-LLTT-IDAGGGLPENPRICFNKNGTLL-AVIAN---ENRIKILETP 652 (1092)
Q Consensus 600 g~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~s~~~~~l-~~~~~---dg~i~iw~~~ 652 (1092)
+. +.++++.++. .... +..... ..+.....++++..+ ++.+. -+.+..++..
T Consensus 370 ~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 370 VVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp TEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 64 6677766664 2233 333321 224445555665544 33332 3566677665
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=88.60 E-value=14 Score=39.64 Aligned_cols=172 Identities=13% Similarity=0.168 Sum_probs=94.2
Q ss_pred eEEEEEcCCc--eeeEEecCC------CCCeEEEEEc---CC---CCCEEEEEe-CCCeEEEEEcCCceeeEeec-----
Q 001358 824 VISLYIVMTF--KTILTIMPP------SPTATSLAFN---PH---DNNVIAIGM-DDSTILIYNARSSEVISKLE----- 883 (1092)
Q Consensus 824 ~i~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---d~~~lasg~-~dg~v~iwd~~~~~~~~~l~----- 883 (1092)
+|.+||+.+. +.++++.-+ ...+..+++. |. ++.++..+. ..+-|.|+|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667888887 777765422 2456778877 21 134444444 45689999999886544331
Q ss_pred ---------cc----cCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCceeee---eeeecCCCCcCCCCCceEEE
Q 001358 884 ---------GH----SKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDGWGIQTC---RSLQTPDGVMTLAPSETHIQ 943 (1092)
Q Consensus 884 ---------~h----~~~V~~l~~spd----g~~l~s~s~Dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~l~ 943 (1092)
|. ...|..|++||+ ++.|....-.+ -++|.+.+.-.... ..++.. +.......-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence 11 246888999998 77777766555 35666543211100 001100 0000001233456
Q ss_pred Ee-cCCCEEEE-EeCCcEEEEEcCC-c---eeeeeeccC-CCcCEEEEEEecCCCEEEEEe
Q 001358 944 FH-KDQTRFLL-VHETHLAIYEAEE-L---TCLKQWFPI-SSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 944 ~s-~dg~~la~-~~d~~v~lwd~~~-~---~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~s 997 (1092)
+. .+|.+.++ ...+.|..|+..+ . .....+... .-..+..+.+.++|.+.++++
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 65 56776666 4778899999875 1 111221111 223466677766776555543
No 358
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=88.33 E-value=31 Score=37.31 Aligned_cols=205 Identities=10% Similarity=0.093 Sum_probs=93.3
Q ss_pred CCEEEEEeCCCeEEEEEcCC-ceeeEee--ccccCCeEEEEEcC--CCCEEEEEeCCC----cEEEEEcCCCceeeeeee
Q 001358 856 NNVIAIGMDDSTILIYNARS-SEVISKL--EGHSKRVTGLVFSD--ALNILVSSGGDA----QIFVWDVDGWGIQTCRSL 926 (1092)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~-~~~~~~l--~~h~~~V~~l~~sp--dg~~l~s~s~Dg----~i~iwd~~~~~~~~~~~~ 926 (1092)
...|.+|+..| +.+++... ++.-..+ ......|.+|++.| ++.+++. +..| .|...+ +.++ ....+
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g-~~~g~~g~gl~~s~-D~G~--tW~~~ 96 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMA-ARTGHLGPTVFRSD-DGGG--NWTEA 96 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEE-EEC--CCEEEEEES-STTS--CCEEC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEE-ecCCCCCccEEEeC-CCCC--CceEC
Confidence 44677788777 55555432 2211111 11235699999998 5555554 4343 333322 2222 11111
Q ss_pred ecC---CCCcC-----CCCCceEEEEec---CCCEEEEEeCCcEEEEEcCCceeeeeecc------------------CC
Q 001358 927 QTP---DGVMT-----LAPSETHIQFHK---DQTRFLLVHETHLAIYEAEELTCLKQWFP------------------IS 977 (1092)
Q Consensus 927 ~~~---~~~~~-----~~~~v~~l~~s~---dg~~la~~~d~~v~lwd~~~~~~~~~~~~------------------~h 977 (1092)
... ..... ....|.++++.| .+.+.+.+..+.|...+ ..|+....... ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~ 175 (394)
T 3b7f_A 97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPD 175 (394)
T ss_dssp SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCC
Confidence 111 00000 001477889986 45555555556554432 22222221110 11
Q ss_pred CcCEEEEEEecC-CCEEEEEeCCCcEEEEECC-CCceEEeecc---ccccCCCCccCcccceEEEECCCCCCEEEEEeCC
Q 001358 978 SVPISQATFSCD-CRMVFTSFVDGTLSIHEAS-NLEVQCRILS---TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1052 (1092)
Q Consensus 978 ~~~v~~l~fs~d-g~~l~t~s~Dg~i~vwd~~-~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d 1052 (1092)
...+.+|.+.|. ...|..+..++. +|... .|+.-..+.. ..+++...........+++++|.++..+.++...
T Consensus 176 ~~~i~~i~~d~~~~~~l~vg~~~gg--l~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~ 253 (394)
T 3b7f_A 176 GPKMHSILVDPRDPKHLYIGMSSGG--VFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC 253 (394)
T ss_dssp CCEEEEEEECTTCTTCEEEEEETBE--EEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT
T ss_pred CCceeEEEECCCCCCEEEEEECCCC--EEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC
Confidence 235788999873 344444544444 33333 3333222211 0111211000011234678888656777777655
Q ss_pred CcEEEEecCCCCCccccCC
Q 001358 1053 GEVYVIEPNEPGDTWAVLP 1071 (1092)
Q Consensus 1053 g~v~~w~~~~~~~~~~~~~ 1071 (1092)
| ||...+.+..|....
T Consensus 254 g---l~~s~D~G~tW~~~~ 269 (394)
T 3b7f_A 254 G---IYRMDRREGVWKRIG 269 (394)
T ss_dssp E---EEEEETTTTEEECGG
T ss_pred e---EEEeCCCCCcceECC
Confidence 4 444455666676553
No 359
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=87.56 E-value=27 Score=35.71 Aligned_cols=225 Identities=12% Similarity=0.042 Sum_probs=115.5
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec
Q 001358 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 883 (1092)
.|..++.... ..++.. +|.+..|-......+..-......|..++... ...++. . ||.|+.|-....-.+..-.
T Consensus 25 ~i~~ia~G~~-h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSS-EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCC-eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 4556665433 233333 78888887654322111111224677888764 334444 5 9999999866532221111
Q ss_pred cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEE
Q 001358 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE 963 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd 963 (1092)
.-...|..++...+ +.+... ||.|..|-........ .+.... ..|..++...+...++ . |+.|+.|-
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg-----~~~~~~---~~i~~i~~G~~~~~~l-~-~G~v~~wG 165 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT-----VPAEAQ---SGVTALDGGVYTALAV-K-NGGVIAWG 165 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS-----CCGGGG---SSEEEEEECSSEEEEE-E-TTEEEEEE
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC-----CCccCC---CCeEEEEcccCEEEEE-E-CCEEEEec
Confidence 12346888877644 333344 9999999766422111 010011 2466665544443332 3 78899987
Q ss_pred cCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCC
Q 001358 964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1043 (1092)
Q Consensus 964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~ 1043 (1092)
....-.+.... .-...|..++...+- .++. .||.|+.|=......+. .|.. ....|. .++.-. .
T Consensus 166 ~n~~gqlg~p~-~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg-------~p~~-~~~~v~--~i~~G~--~ 229 (282)
T 3qhy_B 166 DNYFGQTTVPA-EAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTT-------VPTE-ALSGVS--AIASGE--W 229 (282)
T ss_dssp CCTTSTTSCCG-GGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTC-------CCGG-GGSSCC--EEEECS--S
T ss_pred CCCCCCCCCce-ecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCC-------CCcc-cCCCce--EEEcCC--C
Confidence 65432222111 113567777654333 2333 59999999655432221 0100 012233 344332 2
Q ss_pred CEEEEEeCCCcEEEEecCCCCC
Q 001358 1044 TQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus 1044 ~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
..++.. ||.|+.|--.+.++
T Consensus 230 h~~al~--~g~v~~wG~n~~gq 249 (282)
T 3qhy_B 230 YSLALK--NGKVIAWGSSRTAP 249 (282)
T ss_dssp CEEEEE--TTEEEEESTTCCCC
T ss_pred EEEEEE--CCEEEEecCCCCcc
Confidence 344444 99999999887664
No 360
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=84.55 E-value=0.83 Score=40.88 Aligned_cols=55 Identities=15% Similarity=0.308 Sum_probs=42.9
Q ss_pred hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccc
Q 001358 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDH 127 (1092)
Q Consensus 72 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~ 127 (1092)
++|.|+-+.||||+..|...+|..++++.-..+... .+..++|+.+.......++
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n 87 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHEN 87 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhC
Confidence 899999999999999999999999999865555555 7777777776665554443
No 361
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=83.12 E-value=1.3 Score=40.58 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=44.4
Q ss_pred hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCccccc
Q 001358 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHE 128 (1092)
Q Consensus 72 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~ 128 (1092)
++|.|+-+.||||+..|...+|..+|++.-..+.....+..++|+.+.......+++
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~ 108 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNE 108 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcH
Confidence 899999999999999999999999999855444444567777887777665554443
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=80.91 E-value=58 Score=34.05 Aligned_cols=158 Identities=8% Similarity=0.085 Sum_probs=90.5
Q ss_pred CCCeeEEEEec---CCCEEEEEe-CCeEEEEEcCCceee-------EEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001358 802 QEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTI-------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 870 (1092)
Q Consensus 802 ~~~v~~~~~s~---dg~~l~~~s-dg~i~iwd~~~~~~~-------~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i 870 (1092)
...|.++..-+ +..+++..+ .|.++-..+...... ..+.. ...+..+.... ....|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 34455543333 466777776 699998887653322 22333 34555555544 4567788889999888
Q ss_pred EEcC--C---------ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee-----eeeeecCCCCcC
Q 001358 871 YNAR--S---------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-----CRSLQTPDGVMT 934 (1092)
Q Consensus 871 wd~~--~---------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~ 934 (1092)
+... . |...-.+. ....|.++...+++..|+.++..|.++.-.+..-.... ...+......
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~-- 248 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR-- 248 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT--
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC--
Confidence 8776 2 11112232 34567777777777789999999999988876532211 1111111101
Q ss_pred CCCCceEEEEe-cCCCEEEEEeCCcEEEEEcCC
Q 001358 935 LAPSETHIQFH-KDQTRFLLVHETHLAIYEAEE 966 (1092)
Q Consensus 935 ~~~~v~~l~~s-~dg~~la~~~d~~v~lwd~~~ 966 (1092)
+.+..+... .+...++++.+|.+.-++...
T Consensus 249 --d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 249 --GRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp --CSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred --CeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 134444333 334445557777777777653
No 363
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=80.24 E-value=77 Score=35.07 Aligned_cols=105 Identities=13% Similarity=0.130 Sum_probs=60.6
Q ss_pred CeeEEEEecCCC--EEEEEeCCeEEEEEcCCce---eeEEecC---------CCCCeEEEEEcCC---CCCEEEEEeC--
Q 001358 804 AVPCFALSKNDA--YLFSASGGVISLYIVMTFK---TILTIMP---------PSPTATSLAFNPH---DNNVIAIGMD-- 864 (1092)
Q Consensus 804 ~v~~~~~s~dg~--~l~~~sdg~i~iwd~~~~~---~~~~~~~---------~~~~i~~l~~s~~---d~~~lasg~~-- 864 (1092)
....|+|.|||. ++++-..|.|++++..... .+..+.. .......++|+|+ ++.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999995 7766668999999754221 2222211 1356788999992 2333333221
Q ss_pred C----------CeEEEEEcCC----------ceeeEeec--cccCCeEEEEEcCCCCEEEEEeCCC
Q 001358 865 D----------STILIYNARS----------SEVISKLE--GHSKRVTGLVFSDALNILVSSGGDA 908 (1092)
Q Consensus 865 d----------g~v~iwd~~~----------~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg 908 (1092)
+ ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 1344455532 12232222 1112357899999999988877644
No 364
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.27 E-value=8.3 Score=47.60 Aligned_cols=42 Identities=14% Similarity=0.068 Sum_probs=35.7
Q ss_pred cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeecccc
Q 001358 979 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 979 ~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
..+.+++..+|..+++|-+.|+++|+|++.++.++.......
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~ 277 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQ 277 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccc
Confidence 356777888899999999999999999999999988766433
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=76.98 E-value=67 Score=32.58 Aligned_cols=193 Identities=11% Similarity=0.079 Sum_probs=105.4
Q ss_pred CCEEEEEeCCCeEEE---EEcCCceeeEeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceee---eeeeec
Q 001358 856 NNVIAIGMDDSTILI---YNARSSEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQT---CRSLQT 928 (1092)
Q Consensus 856 ~~~lasg~~dg~v~i---wd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~---~~~~~~ 928 (1092)
...|+.-+..|.++- |++..+.....+. ....|..+.... +..+++.++.+|.++-..+..-. .. ...+..
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~l 112 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKL 112 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCC
T ss_pred CCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEec
Confidence 345555666776654 4443322111133 345676664421 56789999999999999876532 11 011111
Q ss_pred CCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeee-------eeccCCCcCEEEEEEecCCCEEEEEeCCC
Q 001358 929 PDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLK-------QWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus 929 ~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~-------~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg 1000 (1092)
.++ ..+..+........++. +..|.+..++...-.... .+.-.....|..+...+++.+++..+..|
T Consensus 113 keg-----D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G 187 (276)
T 3no0_A 113 TEG-----DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKG 187 (276)
T ss_dssp CTT-----CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTS
T ss_pred CCC-----CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCC
Confidence 111 24555555545544444 788888888764321111 01111246677776666777888999999
Q ss_pred cEEEEECCCCceEEeec-cccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEE--EecC
Q 001358 1001 TLSIHEASNLEVQCRIL-STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV--IEPN 1061 (1092)
Q Consensus 1001 ~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~--w~~~ 1061 (1092)
.++...+..-....+-. ....+.. .+.+-.. ....+ ...++..+.+|.+.. ++..
T Consensus 188 ~~kr~~~~e~~~~~R~gkGv~~i~~---~~~lv~~-~~~~~--~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 188 RVKKISHEEIPKTNRGVKGTEVSGT---KDTLVDL-IPIKE--EVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp CEEEEEGGGSCCCCTTCCCEECCCS---SSCEEEE-EEESS--EEEEEEEETTSCEEEEEEEGG
T ss_pred cEEEeEHHHcccCCCCCcceEEEcC---CCcEEEE-EEeCC--CCEEEEEcCCCeEEEeeeCHH
Confidence 99988876544332210 0001111 2233322 12232 357888889999888 8764
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=74.86 E-value=76 Score=32.17 Aligned_cols=193 Identities=7% Similarity=0.025 Sum_probs=104.8
Q ss_pred EEecCCCEEEEEeCCeEE---EEEcCCceeeEEecCCCCCeEEEEEcCC-CCCEEEEEeCCCeEEEEEcCCce------e
Q 001358 809 ALSKNDAYLFSASGGVIS---LYIVMTFKTILTIMPPSPTATSLAFNPH-DNNVIAIGMDDSTILIYNARSSE------V 878 (1092)
Q Consensus 809 ~~s~dg~~l~~~sdg~i~---iwd~~~~~~~~~~~~~~~~i~~l~~s~~-d~~~lasg~~dg~v~iwd~~~~~------~ 878 (1092)
..+....+++..+.|.++ +|++..++... +-.....|.++.. ++ +..+++..+.+|.++-..+..-. .
T Consensus 31 ~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~ 108 (276)
T 3no0_A 31 RVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMP 108 (276)
T ss_dssp EEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEE
T ss_pred EECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeE
Confidence 344444555555667654 34444332211 2223456666644 32 35689999999999999876532 2
Q ss_pred eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce-----eeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001358 879 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI-----QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 879 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
.-.+. -.+.+..+....+...++..+..|.+..++...-.. .-...+....+ ..|.++...+++..++.
T Consensus 109 ~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~~~~ll~ 182 (276)
T 3no0_A 109 IIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNGEPYLLV 182 (276)
T ss_dssp CSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESSCSEEEE
T ss_pred EEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCCCCEEEE
Confidence 22233 234566666666667888889999888887653111 00111111111 34666655555555554
Q ss_pred -EeCCcEEEEEcCCcee-------eeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEE--EECCCCc
Q 001358 954 -VHETHLAIYEAEELTC-------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI--HEASNLE 1011 (1092)
Q Consensus 954 -~~d~~v~lwd~~~~~~-------~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~v--wd~~~~~ 1011 (1092)
+..|.++...+..-.. +..+ ...+.+..+....++..++..+.+|.+.. +++..-.
T Consensus 183 ~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i~ 248 (276)
T 3no0_A 183 ITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIP 248 (276)
T ss_dssp EETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGSC
T ss_pred EeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHCC
Confidence 7778888887643221 1111 12344554444333445555667777666 6655443
No 367
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=74.54 E-value=0.84 Score=41.31 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=28.8
Q ss_pred cccchhhhHhHHhhhhhhccCCCHHHHHHHHHhhcc
Q 001358 67 RYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLK 102 (1092)
Q Consensus 67 ~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~ 102 (1092)
.+.. ++|.|+-|.||||+..| ..+|..++.+.-.
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~ 64 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSP 64 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGG
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhH
Confidence 3444 89999999999999999 9999999987433
No 368
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=73.63 E-value=66 Score=39.56 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=32.1
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee
Q 001358 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1092)
.+.+++..+ +..++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 567778887 7889999999999999999999987764
No 369
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=69.76 E-value=1.2e+02 Score=32.43 Aligned_cols=162 Identities=14% Similarity=0.163 Sum_probs=80.2
Q ss_pred EEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCE
Q 001358 737 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 816 (1092)
Q Consensus 737 i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~ 816 (1092)
+..++++......++...+|.+..|-.....+.-.+.......+ .....+ ....|..++.. ....
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p----------~~v~~l----~~~~i~~va~G-~~hs 171 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRP----------RVIESL----RGIEVVDVAAG-GAHS 171 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEE----------EECGGG----TTSCEEEEEEC-SSEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCC----------eEeccc----CCCeEEEEEeC-cCeE
Confidence 44456666666777778888888886433221111110000000 000001 12244444432 2233
Q ss_pred EEEEeCCeEEEEEcCCc-----------eeeEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-e------
Q 001358 817 LFSASGGVISLYIVMTF-----------KTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-E------ 877 (1092)
Q Consensus 817 l~~~sdg~i~iwd~~~~-----------~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~------ 877 (1092)
++...+|.|+.|-.... .....+.. ....|..++... +....+.-..||.|+.|-.... +
T Consensus 172 ~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~ 250 (389)
T 3kci_A 172 ACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGRGGS 250 (389)
T ss_dssp EEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSSSSC
T ss_pred EEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCCCCC
Confidence 34444677888864321 01111211 224577777754 3456667788999999965431 1
Q ss_pred ----eeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001358 878 ----VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916 (1092)
Q Consensus 878 ----~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~ 916 (1092)
....+.. ....|..++... .+.+....||.|..|-..
T Consensus 251 ~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 251 DGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp CCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTSCEEEEECC
T ss_pred CCccccEEecccCCCcEEEEeCCC--CEEEEEeCCCeEEEEeCC
Confidence 1112221 122466666543 344445789999999754
No 370
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=61.81 E-value=33 Score=29.69 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=48.0
Q ss_pred HHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhcc
Q 001358 13 LQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALD 86 (1092)
Q Consensus 13 ~q~L~~~G-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~ 86 (1092)
...+...| |.++.+.+++=-.+..+ ...=.-....|+|++|+..+.+.-.++... . ..+-..=.=+..
T Consensus 20 G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~--~a~~~lg~~~~~ 93 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF----I--KGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----H--HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh----h--HHHHHHHHHHHH
Confidence 33333344 77777665553222221 111133345678888877776532222111 1 111111122345
Q ss_pred CCCHHHHHHHHHhhccccCCCCHHHHHHHHHhh
Q 001358 87 GHDIAKALNILKKDLKDFAPGNEELFKELAQLL 119 (1092)
Q Consensus 87 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1092)
.|++.+|+..+++-|. +.+.+++-...|..||
T Consensus 94 ~~~~~~A~~~~~~al~-l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ-VDPSNEEAREGVRNCL 125 (126)
T ss_dssp TTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHH-HCcCCHHHHHHHHHhc
Confidence 6778888888877544 3344555555555543
No 371
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=59.29 E-value=1.6e+02 Score=30.20 Aligned_cols=151 Identities=11% Similarity=0.085 Sum_probs=80.4
Q ss_pred CCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec-CCCEEEEEeCC
Q 001358 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGG 823 (1092)
Q Consensus 745 ~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~-dg~~l~~~sdg 823 (1092)
+...++..+.+|.++--.+..-. .....-.....+.. . ..+..+.... +..+++..+.|
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~-----------------~~~r~G~~~i~l~~--~-d~lv~~~~~~~~~~i~l~T~~G 167 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFN-----------------RLRTAGKVAIKLVD--G-DELIGVDLTSGEDEVMLFSAEG 167 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGT-----------------TCCTTCEESSCCCT--T-CCEEEEEEECTTCEEEEEETTS
T ss_pred CCcEEEEEeCCCeEEEEEHHHhh-----------------ccccCCeEEEEECC--C-CEEEEEEEeCCCCEEEEECCCC
Confidence 45668888999998876543211 11111122222221 2 4444444443 34455555578
Q ss_pred eEEEEEcCCcee---------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce---------eeEeeccc
Q 001358 824 VISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---------VISKLEGH 885 (1092)
Q Consensus 824 ~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~---------~~~~l~~h 885 (1092)
.+..+....-.. ...+. ....|.++.... ++..+++.+..|.++-.++..-. ....+..-
T Consensus 168 ~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~-~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~ 245 (307)
T 1zi0_A 168 KVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPR-GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 245 (307)
T ss_dssp EEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCC-SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTT
T ss_pred cEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEec-CCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCC
Confidence 877777643211 11222 334666666555 45678889999999988774321 11222223
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001358 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~ 917 (1092)
.+.+..+....+...++..+.+|.+.-.+++.
T Consensus 246 ~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 246 NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred CCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 34555554444445555666777766666654
No 372
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=58.20 E-value=2e+02 Score=30.78 Aligned_cols=194 Identities=8% Similarity=0.064 Sum_probs=96.6
Q ss_pred eeEEEEecCCCEEE-EEeCCeEEEEEcCCc-----------eeeEEecCC-CCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001358 805 VPCFALSKNDAYLF-SASGGVISLYIVMTF-----------KTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIY 871 (1092)
Q Consensus 805 v~~~~~s~dg~~l~-~~sdg~i~iwd~~~~-----------~~~~~~~~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iw 871 (1092)
+..++++......+ ...+|.|..|-.... .....+... ...|..++.. ....+.-..||.|+.|
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYTW 183 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEEe
Confidence 44455554444333 334677777754321 111222221 2356777664 4566667889999999
Q ss_pred EcCCc-e----------eeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc---------eeeeeeeecCC
Q 001358 872 NARSS-E----------VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG---------IQTCRSLQTPD 930 (1092)
Q Consensus 872 d~~~~-~----------~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~---------~~~~~~~~~~~ 930 (1092)
-.... + ....+.. ....|..++......+.+....||.|..|-....- ......+..+.
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 263 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 263 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC
Confidence 75431 1 1111111 23357777765433566667789999999654211 01111111111
Q ss_pred CCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCcee----------eeeecc-CCCcCEEEEEEecCCCEEEEEeCC
Q 001358 931 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC----------LKQWFP-ISSVPISQATFSCDCRMVFTSFVD 999 (1092)
Q Consensus 931 ~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~----------~~~~~~-~h~~~v~~l~fs~dg~~l~t~s~D 999 (1092)
+ ..|..++..... .+|...++.|+.|-....-. ...... .....|..++. -....+....|
T Consensus 264 ~-----~~v~~v~~G~~h-s~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~ 335 (389)
T 3kci_A 264 G-----LGVVKVECGSQF-SVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTED 335 (389)
T ss_dssp T-----SCEEEEEEETTE-EEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETT
T ss_pred C-----CcEEEEeCCCCE-EEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCC
Confidence 1 124444443222 23346778888886532110 011111 11234655553 33455556789
Q ss_pred CcEEEEECCC
Q 001358 1000 GTLSIHEASN 1009 (1092)
Q Consensus 1000 g~i~vwd~~~ 1009 (1092)
|.|+.|=...
T Consensus 336 G~v~~wG~n~ 345 (389)
T 3kci_A 336 GEVYTWGDND 345 (389)
T ss_dssp CCEEEEECCT
T ss_pred CCEEEeeCCC
Confidence 9999996553
No 373
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=57.53 E-value=31 Score=35.43 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhhcC-hhHHHHHHHH--hcCCCh-h--HHHH--HHHhcCcCHHHHHHHhcc
Q 001358 6 KDLVFLILQFLNEEG-FTESAHMLER--ESRFYF-D--MKFF--EDMILDGKWEDVEQYLSS 59 (1092)
Q Consensus 6 ~~~~~li~q~L~~~G-~~~s~~~L~~--Esg~~~-~--~~~~--~~~i~~G~w~~~~~~l~~ 59 (1092)
-+.++++.+++...| +.++.+.|++ +.++.. + +..+ .-....|++++|+..+.+
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ 126 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC
Confidence 345677777777777 6777777765 233222 1 1111 334456777777777665
No 374
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=55.98 E-value=28 Score=39.19 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=42.5
Q ss_pred CceEEEEecCCCEEEEEe-------------CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEe
Q 001358 938 SETHIQFHKDQTRFLLVH-------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 938 ~v~~l~~s~dg~~la~~~-------------d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s 997 (1092)
....|+|.++|.+.++.. .+.+..++..+++............++.++||||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 467899999999877421 125677777777765543222346799999999999888764
No 375
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=55.56 E-value=22 Score=40.67 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=42.9
Q ss_pred CceEEEEecCCCEEEEEeC-------------CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEe
Q 001358 938 SETHIQFHKDQTRFLLVHE-------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 938 ~v~~l~~s~dg~~la~~~d-------------~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s 997 (1092)
..-.|+|+|+|+++++... +.+.+.+..+++..+.........++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 3567999999996665311 23566666777766554444478999999999999888763
No 376
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=54.70 E-value=54 Score=27.80 Aligned_cols=59 Identities=7% Similarity=-0.020 Sum_probs=32.3
Q ss_pred eEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001358 940 THIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 940 ~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~ 1009 (1092)
..+.+..||.+++...+..-.+|...+.. ...-..+.+..||.+++.. .++.+ +|...+
T Consensus 26 ~~L~~q~dGNLvL~~~~~~~~vWssnt~~---------~~~~~~l~l~~dGNLVl~d-~~~~~-iW~S~t 84 (113)
T 3mez_B 26 YSLVMRDDCNLVLTKGSKTNIVWESGTSG---------RGQHCFMRLGHSGELDITD-DRLNT-VFVSNT 84 (113)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECCCTT---------SCSSCEEEECTTSCEEEEC-TTSCE-EEECSC
T ss_pred EEEEEcCCCEEEEEECCCCEEEEECCccc---------CCcCEEEEEeCCCcEEEEC-CCCCE-EEECCC
Confidence 45666777776665332234466654321 1122456788888877754 34444 676554
No 377
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=53.86 E-value=17 Score=31.98 Aligned_cols=91 Identities=19% Similarity=0.310 Sum_probs=51.6
Q ss_pred CchhHHHHHHHHHhhhhcCh-hHHHHHHHHhcCCChhHHHHHHHhcCcCHHHHHHHhccCCCc--CCccccchhhhHhHH
Q 001358 2 SKLNKDLVFLILQFLNEEGF-TESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKV--DDNRYSTKIYFEIRK 78 (1092)
Q Consensus 2 ~~~~~~~~~li~q~L~~~G~-~~s~~~L~~Esg~~~~~~~~~~~i~~G~w~~~~~~l~~~~~~--~~~~~~~~~~~~i~~ 78 (1092)
+....++...|+..|.+.|| ..+...+.++-|++.+ +...|++.++.+.+. -...+..-++..+.+
T Consensus 18 ~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~ 86 (130)
T 2k9m_A 18 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEE 86 (130)
T ss_dssp CSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhc
Confidence 34567788999999999997 4566667777676543 334566666666332 222222212222211
Q ss_pred ---------hhhhh-hccCCCHH-HHHHHHHhhcccc
Q 001358 79 ---------QNFFE-ALDGHDIA-KALNILKKDLKDF 104 (1092)
Q Consensus 79 ---------q~~~E-ll~~~~~~-~a~~~l~~~l~~~ 104 (1092)
..+|| +|.++++. +|+.++|+ |.|-
T Consensus 87 ~~~~a~~ii~~~l~~~la~~~~~~~~~~~Ir~-L~P~ 122 (130)
T 2k9m_A 87 IYPEEEEILKKALRDLKRGKKLKPEIKGKLSR-LRLF 122 (130)
T ss_dssp SCSTTHHHHHHHHHHHHHSCCCCHHHHHHHHT-CCSC
T ss_pred CchhHHHHHHHhHHHHHHcCCHHHHHHHHHHc-CCCC
Confidence 14566 77666643 45666653 5543
No 378
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=52.77 E-value=2e+02 Score=33.40 Aligned_cols=30 Identities=10% Similarity=0.203 Sum_probs=26.0
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeeEeecc
Q 001358 855 DNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
+..+|++-+.|.++|+|++.+++++....-
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 467999999999999999999998876553
No 379
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=49.33 E-value=32 Score=35.81 Aligned_cols=113 Identities=17% Similarity=0.201 Sum_probs=61.1
Q ss_pred HHHHHHHhcCcCH---HHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCCCHHHHHHHHHhh-ccccCCCCHHHHH
Q 001358 38 MKFFEDMILDGKW---EDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKD-LKDFAPGNEELFK 113 (1092)
Q Consensus 38 ~~~~~~~i~~G~w---~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~-l~~~~~~~~~~~~ 113 (1092)
+.+|++.|.+|+| -||-+.+..+ +.-++.++++.+|+.+|.+= +.=++..+...-.
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi--------------------~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV--------------------AARYSKQGNWAAAVDILASVSQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH--------------------HHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 7899999999999 8888876643 11123345555565555542 1111223444445
Q ss_pred HHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCcccccccCCCCCccHHHHHHHHHHHHHHHhcCCCC
Q 001358 114 ELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANP 190 (1092)
Q Consensus 114 ~l~~ll~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~~~~~ 190 (1092)
+|+.++.- .... .++ ....+.+.+|++-+. .+||+ .|.| ..+++.|++|=.....++
T Consensus 76 DL~~llve-vy~~----~~~-~~~~~~~~rL~~L~~-~~~~~------------~p~r-~~fi~~ai~WS~~~g~~~ 132 (336)
T 3lpz_A 76 DLAVLLVD-TFRQ----AGQ-RVDGASRGKLLGCLR-LFQPG------------EPVR-KRFVKEMIDWSKKFGDYP 132 (336)
T ss_dssp HHHHHHHH-HHHH----HTC-CCCHHHHHHHHHHHT-TSCTT------------CHHH-HHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHH-HHHH----cCC-CCCHHHHHHHHHHHH-hCCCC------------CcHH-HHHHHHHHHHHhhcCCCC
Confidence 66665542 1111 111 122345555544443 44441 2344 779999999987654343
No 380
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=48.18 E-value=66 Score=40.65 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee
Q 001358 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1092)
.+.+++..+ +..++++-+.|+++|||++.+++++.+.
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 445566666 7889999999999999999999987764
No 381
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=45.67 E-value=40 Score=34.79 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=62.2
Q ss_pred HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCCCHHHHHHHHHhhccc-cCCCCHHHHHHHH
Q 001358 38 MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKD-FAPGNEELFKELA 116 (1092)
Q Consensus 38 ~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~-~~~~~~~~~~~l~ 116 (1092)
+.+|++.|-+|+|-||-+.+..+ |.-++.++++.+|+.+|.+=-.- +++.+...-.+|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl--------------------~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI--------------------ANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH--------------------HHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 78999999999999998886644 22223345566666666552111 2223444445666
Q ss_pred HhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCcccccccCCCCCccHHHHHHHHHHHHHHHhcCCC
Q 001358 117 QLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCAN 189 (1092)
Q Consensus 117 ~ll~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~~~~ 189 (1092)
.++.- .... .+ .....+++.+|. +|-+.+|++ .+. ..++++.|++|=.....+
T Consensus 77 ~llve-v~~~----~~-~~~~~~~~~rl~-~l~~~~p~~------------~~~-r~~fi~~ai~WS~~~g~~ 129 (312)
T 2wpv_A 77 FYLLE-VYDL----AE-VKVDDISVARLV-RLIAELDPS------------EPN-LKDVITGMNNWSIKFSEY 129 (312)
T ss_dssp HHHHH-HHHH----TT-CCCSHHHHHHHH-HHHTTCCTT------------CTT-HHHHHHHHHHHHHHTSSC
T ss_pred HHHHH-HHHH----cC-CCCCHHHHHHHH-HHHHHCCCC------------Cch-HHHHHHHHHHHHhhcCCC
Confidence 55542 1111 11 111234455554 444445552 222 478889999998765543
No 382
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=45.52 E-value=2.8e+02 Score=28.76 Aligned_cols=164 Identities=10% Similarity=0.073 Sum_probs=91.6
Q ss_pred CCCeEEEEEcCC--CCCEEEEEeCCCeEEEEEcCCce-------eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001358 843 SPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSE-------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 913 (1092)
Q Consensus 843 ~~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~~~-------~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iw 913 (1092)
...|.++..-++ +..++++.+.+|.++--.+.... ....+.. .+.+..+........|+..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 345655544331 46799999999999998876532 2223333 3456666555566778888899988888
Q ss_pred EcC--CCc----eeee-eeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceee-------eee-ccCC
Q 001358 914 DVD--GWG----IQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCL-------KQW-FPIS 977 (1092)
Q Consensus 914 d~~--~~~----~~~~-~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~-------~~~-~~~h 977 (1092)
.+. .-. .... ..+... ....|.++...+++..|+. +..|.++.-.+..-... ..+ +..-
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~-----~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~ 247 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFN-----IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR 247 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCC-----TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT
T ss_pred ECcccccCcCCcCCCCeeeecCC-----CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC
Confidence 776 211 0011 111111 1135666666555555555 67788887776432211 111 1111
Q ss_pred CcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 001358 978 SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~ 1012 (1092)
.+.+..+....+...++..+.+|.+.-++...-..
T Consensus 248 ~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~ 282 (327)
T 3uc1_A 248 RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRK 282 (327)
T ss_dssp TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCB
T ss_pred CCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccc
Confidence 23455554444455566667777777776655433
No 383
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=43.14 E-value=1.2e+02 Score=26.92 Aligned_cols=94 Identities=12% Similarity=0.148 Sum_probs=54.8
Q ss_pred hhHHHHHHHHhcCCChh--H---HHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCCCHHHHHH
Q 001358 21 FTESAHMLERESRFYFD--M---KFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALN 95 (1092)
Q Consensus 21 ~~~s~~~L~~Esg~~~~--~---~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~ 95 (1092)
+.++...+++-.....+ + ..=+-....|+|++|+..+.+.-.++... . .+.+ ..=.=+...|++.+|+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~-~a~~----~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-P-KAHR----FLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H-HHHH----HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H-HHHH----HHHHHHHHcCchHHHHH
Confidence 34555555555444332 1 11133466799999999998742222221 1 1211 11222346799999999
Q ss_pred HHHhhccccCCCCHHHHHHHHHhhcc
Q 001358 96 ILKKDLKDFAPGNEELFKELAQLLTL 121 (1092)
Q Consensus 96 ~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1092)
.+++-+. +.+.+++.+..|+.++..
T Consensus 87 ~~~~al~-~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 87 CYRRSVE-LNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHH
Confidence 9998654 444567777888877654
No 384
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.08 E-value=9.5 Score=48.36 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=35.0
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeecccccc
Q 001358 980 PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL 1022 (1092)
Q Consensus 980 ~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 1022 (1092)
.+.+++..++..+|+|-+.|+++|+|++.++.++.........
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~~~~ 281 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTI 281 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECCCSS
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechhhcC
Confidence 4455667788899999999999999999999998887644433
No 385
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=41.64 E-value=3.1e+02 Score=28.17 Aligned_cols=109 Identities=8% Similarity=0.041 Sum_probs=60.4
Q ss_pred CCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE-EEeCC
Q 001358 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SASGG 823 (1092)
Q Consensus 745 ~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~-~~sdg 823 (1092)
+...++..+.+|.++.-.+..-... . ..| .....+. ....+..+....++..++ ...+|
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~--------------r-~~G--~~~i~L~---~~d~lv~~~~~~~~~~i~l~T~~G 172 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAV--------------K-SRG--VIVIKLN---DKDFVTSAEIVFKDEKVICLSKKG 172 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC-------------------C--EECBCCC---TTCCEEEEEEECTTCEEEEEETTS
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhcc--------------C-CCc--EEEEecC---CCCEEEEEEEeCCCCEEEEEeCCC
Confidence 4566888888888877654321100 0 111 2222232 234455554444444444 44578
Q ss_pred eEEEEEcCCc---------eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001358 824 VISLYIVMTF---------KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 824 ~i~iwd~~~~---------~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 875 (1092)
.+..+....- .....+. ....|.++..-. ++..|++.+..|..+..++..
T Consensus 173 ~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 173 SAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVK-ENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECT-TCSEEEEEETTSEEEEEEGGG
T ss_pred cEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEEC-CCCeEEEEECCCceEEEEHHH
Confidence 8888877542 1222233 234566666555 456788899999999988854
No 386
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=40.43 E-value=1.1e+02 Score=35.69 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=30.4
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeecc
Q 001358 980 PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 980 ~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
.|.++. .+..+|+|-+.|.++|+|++.++.++.....
T Consensus 223 ~Is~~~--~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKL--FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEec--cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 455444 4578999999999999999999998877765
No 387
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=39.82 E-value=3.6e+02 Score=28.47 Aligned_cols=64 Identities=6% Similarity=-0.010 Sum_probs=36.3
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC-------CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358 587 DTAKDQILAAGDDHVIKIWDMNK-------VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 587 ~~~~~~l~~~s~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
-|+..++++.+.+|.|+--.+.. ++-+..+..... ..+..+........++..++.|.++-+..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~G~~~~~~~ 74 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEE-DFIDQLWLVNTHDTLLTFTSSGKVFWLPV 74 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCC-CCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCC-CEEEEEEEecCCCEEEEEeCCCeEEEEEH
Confidence 46778899999999998764422 111222222221 23444444445566666777777665543
No 388
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=39.46 E-value=90 Score=35.60 Aligned_cols=64 Identities=14% Similarity=0.246 Sum_probs=48.1
Q ss_pred ceEEEEEecCCCEEEEEecC--------CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE
Q 001358 531 GCTRMAYSANGRRLFSCGTS--------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 596 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~--------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 596 (1092)
..-.|+|+|+|+++++--.+ ..+.+.+.+.+..+++..+.+.+.. ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~--gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC--CccCcCeeECCCCCEEEEE
Confidence 45679999999966553211 0134567888889999988888876 5789999999999888764
No 389
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=37.74 E-value=1.3e+02 Score=33.87 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=47.0
Q ss_pred ceEEEEEecCCCEEEEEecC--------CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe
Q 001358 531 GCTRMAYSANGRRLFSCGTS--------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~--------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 597 (1092)
....|+|.++|.+.++.-.. +.+...++.++..++++.+.+.+.. ...++.++|+||++.|++.-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~--~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC--CccccCCEECCCCCEEEEEE
Confidence 46789999999877733110 1124478888998998877776543 35689999999999887753
No 390
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=37.17 E-value=1e+02 Score=27.38 Aligned_cols=14 Identities=21% Similarity=0.059 Sum_probs=8.0
Q ss_pred cCCCHHHHHHHHHh
Q 001358 86 DGHDIAKALNILKK 99 (1092)
Q Consensus 86 ~~~~~~~a~~~l~~ 99 (1092)
..|++.+|+..+++
T Consensus 101 ~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 101 QXGELAEAESGLFL 114 (148)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 45556666665554
No 391
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=37.09 E-value=4.9e+02 Score=29.18 Aligned_cols=166 Identities=13% Similarity=0.127 Sum_probs=88.1
Q ss_pred ccccceeEEEeeCCCCcEEEEEEeCCCc----------------------------EEEEECCCCceeEEEecC--Ccce
Q 001358 439 AHVGNVNDLAFSAPCKQISVITCGDDKT----------------------------IKVWDAVTGSRTYSFEGH--GAPV 488 (1092)
Q Consensus 439 ~h~~~v~~~~~s~d~~~l~l~s~~~d~~----------------------------i~vwd~~~~~~~~~~~~~--~~~v 488 (1092)
.|-..+....|.-||+. -++....+++ +.|+|-.+|+.+.++.-. .+.+
T Consensus 176 a~yt~~~V~DlDGDGka-EIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~ 254 (591)
T 2zux_A 176 AHYTQFMVYDLDGDGKA-EVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNV 254 (591)
T ss_dssp TTSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCG
T ss_pred cccCceeEEEcCCCCcc-eEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcc
Confidence 35566777788888876 4555555554 788998899888776431 1111
Q ss_pred ---------------EEEeecccCCccEEEEEe---cCCeEEEEEcCCCCceE--EecCCC-----------CceEEEEE
Q 001358 489 ---------------YSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGARV--DYDAPG-----------LGCTRMAY 537 (1092)
Q Consensus 489 ---------------~~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~--~~~~~~-----------~~i~~~~~ 537 (1092)
..++.. +.+...++.+- .-..+..||++..+... .+.... +...-.-+
T Consensus 255 ~~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDV 333 (591)
T 2zux_A 255 SDWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADV 333 (591)
T ss_dssp GGGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECC
T ss_pred cccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeC
Confidence 122221 11122333322 12246777776554322 222211 22333334
Q ss_pred ecCCCE-EEEEecCCCCceeEEEEeCCCCeEEEEEe-eccccCCceEEEEEcCCC--CEEEEEeCCC----eEEEEECCC
Q 001358 538 SANGRR-LFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAK--DQILAAGDDH----VIKIWDMNK 609 (1092)
Q Consensus 538 s~dg~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~--~~l~~~s~dg----~i~iwd~~~ 609 (1092)
.-||+- |+.++. ++| ..|+.+.... +|. ..+....|.|+. ..++.+.+++ -..+.|..+
T Consensus 334 DgDG~dEIv~Gs~---------~iD-~dG~~L~st~~gHG---Da~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~t 400 (591)
T 2zux_A 334 DGDGKDEIIFGSM---------AVD-HDGKGMYSTGLGHG---DALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAAT 400 (591)
T ss_dssp SSSSSCEEEETTE---------EEC-TTSCEEEECSCCCC---SCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTT
T ss_pred CCCCCceEEEeee---------EEC-CCCCEeeeCCCCCC---CeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCC
Confidence 455543 222221 223 2344433332 333 677777888874 4666666541 355689999
Q ss_pred CceEEEEeCC
Q 001358 610 VQLLTTIDAG 619 (1092)
Q Consensus 610 ~~~~~~~~~~ 619 (1092)
|+.+......
T Consensus 401 G~vlw~~~~~ 410 (591)
T 2zux_A 401 GKILWGVYAG 410 (591)
T ss_dssp CCEEEEECCS
T ss_pred CcEEEEcCCC
Confidence 9999887644
No 392
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=36.87 E-value=87 Score=31.01 Aligned_cols=112 Identities=8% Similarity=0.064 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHH
Q 001358 5 NKDLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRK 78 (1092)
Q Consensus 5 ~~~~~~li~q~L~~~G-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~ 78 (1092)
+.|+.....+.+...| |.++...+++=-....+ ...-.-....|+|++|+..+......+... ......+-
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~ 78 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT---KAKSADFE 78 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT---TCCHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch---hHHHHHHH
Confidence 3455555556666666 77777766653332211 233345667899999999887742222111 12112222
Q ss_pred hhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhc
Q 001358 79 QNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120 (1092)
Q Consensus 79 q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1092)
..-.-+...|++.+|+..+++-+. +.+.+...+..|+.+..
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~l~~~~~ 119 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVD-RDTTRLDMYGQIGSYFY 119 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh-cCcccHHHHHHHHHHHH
Confidence 222233456888888888887544 22234445555555443
No 393
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=35.34 E-value=36 Score=26.78 Aligned_cols=29 Identities=14% Similarity=0.136 Sum_probs=26.2
Q ss_pred HHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001358 7 DLVFLILQFLNEEGFTESAHMLERESRFY 35 (1092)
Q Consensus 7 ~~~~li~q~L~~~G~~~s~~~L~~Esg~~ 35 (1092)
-+.-||-.||+=.||+-|+..++-|+|..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 35668999999999999999999999985
No 394
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=34.39 E-value=4.5 Score=33.86 Aligned_cols=35 Identities=9% Similarity=0.125 Sum_probs=27.0
Q ss_pred HHHHHHhcCCChhHHHHHHHhcCcCHHHHHHHhccC
Q 001358 25 AHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1092)
Q Consensus 25 ~~~L~~Esg~~~~~~~~~~~i~~G~w~~~~~~l~~~ 60 (1092)
+..+-+|||+++++.-+-..|. |+|+++.+.++++
T Consensus 38 ~i~vi~~sGL~y~~~pmgT~IE-Ge~devm~vvk~~ 72 (106)
T 1vk8_A 38 AIEKISSWGMKYEVGPSNTTVE-GEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHTTCSCEEECSSCEEEE-ECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEeCCCccEEE-cCHHHHHHHHHHH
Confidence 3344468999998777777665 9999999998754
No 395
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=34.19 E-value=1.1e+02 Score=25.78 Aligned_cols=87 Identities=9% Similarity=-0.020 Sum_probs=40.9
Q ss_pred HHHHHHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhh
Q 001358 9 VFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFF 82 (1092)
Q Consensus 9 ~~li~q~L~~~G-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~ 82 (1092)
.......+...| |.++...+++=-.+..+ ...=.-....|+|++|+..+.+...++... . .+.+. .=.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~-~~~~~----lg~ 80 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-V-RAYIR----KAT 80 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H-HHHHH----HHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-H-HHHHH----HHH
Confidence 333333344444 67776666543332221 112233445678888887776542222111 0 01111 111
Q ss_pred hhccCCCHHHHHHHHHhhc
Q 001358 83 EALDGHDIAKALNILKKDL 101 (1092)
Q Consensus 83 Ell~~~~~~~a~~~l~~~l 101 (1092)
=+...|++.+|+..+++-+
T Consensus 81 ~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 81 AQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHH
Confidence 2234677778877777643
No 396
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=33.97 E-value=5.5e+02 Score=28.81 Aligned_cols=190 Identities=12% Similarity=0.049 Sum_probs=96.5
Q ss_pred eeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcceEEEeecccCCccEEEEEecCC----eEEEEEcCC
Q 001358 444 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDS 518 (1092)
Q Consensus 444 v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg----~i~vwd~~~ 518 (1092)
..-..+.-||+. -++.|+ .++| ..|+.+.+. .+|...+....|.|+..|.-++.+..++ -..+.|..+
T Consensus 328 ~~vaDVDgDG~d-EIv~Gs-----~~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~t 400 (591)
T 2zux_A 328 LSIADVDGDGKD-EIIFGS-----MAVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAAT 400 (591)
T ss_dssp CEEECCSSSSSC-EEEETT-----EEEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTT
T ss_pred CeeEeCCCCCCc-eEEEee-----eEEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCC
Confidence 444556667776 455444 1344 455555444 3688777777787776666777776652 244578778
Q ss_pred CCceEEecCC--CCceEEEEEecCCC--EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEE
Q 001358 519 LGARVDYDAP--GLGCTRMAYSANGR--RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1092)
Q Consensus 519 ~~~~~~~~~~--~~~i~~~~~s~dg~--~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 594 (1092)
++.+...... .+......|.|+.. .+.+ . -.+++. +|+.+.... . ...-..+-|..+...-+
T Consensus 401 G~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~--~-------~~l~~~-~G~~i~~~~--p--~~~N~~i~WdGDl~rel 466 (591)
T 2zux_A 401 GKILWGVYAGKDVGRGMAADIDPRYPGQEVWA--N-------GSLYSA-KGVKIGSGV--P--SSTNFGIWWDGDLLREQ 466 (591)
T ss_dssp CCEEEEECCSSCCCCEEEECCCTTSSSCEEEE--T-------TEEECT-TSCBCSSCC--C--SCCSEEECCSSSSSCEE
T ss_pred CcEEEEcCCCCCCCceeEEecCCCCCceEEEe--c-------CceECC-CCCEecCCC--C--CCcceeEEECCCCcHhh
Confidence 7777665432 22333333444422 2222 0 124443 333332210 1 01123466776653333
Q ss_pred EEeCCCeEEEEECCCCceEEEEeCCC-----CCCCCceEEEcc--CC-CEEEE-EeCCCeEEEEECCCCCe
Q 001358 595 AAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNK--NG-TLLAV-IANENRIKILETPESNS 656 (1092)
Q Consensus 595 ~~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~--~~-~~l~~-~~~dg~i~iw~~~~~~~ 656 (1092)
.- .+.|.-|+...+.....+...+ ....-.++...- |. .-++. ..++..++||.......
T Consensus 467 ld--~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~pt~ 535 (591)
T 2zux_A 467 LD--SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTIPTE 535 (591)
T ss_dssp EE--TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCCCCS
T ss_pred hC--CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCCCCCc
Confidence 32 2478889988777544444332 112223344332 22 23443 44556799998765433
No 397
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=32.03 E-value=26 Score=20.12 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHhhhhc
Q 001358 4 LNKDLVFLILQFLNEE 19 (1092)
Q Consensus 4 ~~~~~~~li~q~L~~~ 19 (1092)
+-+||++||-||-+..
T Consensus 3 fMkDvlql~qQy~qsh 18 (26)
T 1kdl_A 3 FMKDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578999999986643
No 398
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=31.45 E-value=4.5e+02 Score=27.08 Aligned_cols=238 Identities=7% Similarity=0.093 Sum_probs=121.5
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCcee----eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc---CC------ce
Q 001358 812 KNDAYLFSAS-GGVISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA---RS------SE 877 (1092)
Q Consensus 812 ~dg~~l~~~s-dg~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~---~~------~~ 877 (1092)
|+..++++.+ +|.|+--.+.+.+. -..+.. .+.+..+.... ....|+..+..|.++-+.. .. |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 3445555555 57777665542211 112222 23444444444 4556777888887766554 22 22
Q ss_pred eeEe---eccccCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCceee----eeeeecCCCCcCCCCCceEEEEecC
Q 001358 878 VISK---LEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGWGIQT----CRSLQTPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 878 ~~~~---l~~h~~~V~~l~~sp---dg~~l~s~s~Dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~v~~l~~s~d 947 (1092)
++.. +. ....|.++...+ ++.+++.++..|.++--.+..-.... ...+...++ +.+..+....+
T Consensus 81 ~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~ 154 (323)
T 1wp5_A 81 HIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDG 154 (323)
T ss_dssp EGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECS
T ss_pred ChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCC
Confidence 2211 22 234466554333 26789999999999999886422111 111222222 24555544444
Q ss_pred C-CEEEEEeCCcEEEEEcCCceeeee-------eccCCCcCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceEEeecc
Q 001358 948 Q-TRFLLVHETHLAIYEAEELTCLKQ-------WFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 948 g-~~la~~~d~~v~lwd~~~~~~~~~-------~~~~h~~~v~~l~fs~dg~-~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
. ..++.+.+|.+..++...-..... ..-.....|.++..-+++. .|++.+..|..+.-++..-....+-..
T Consensus 155 ~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k 234 (323)
T 1wp5_A 155 MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR 234 (323)
T ss_dssp CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC
T ss_pred CCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC
Confidence 4 445557888888887753221111 1111245566665544455 788888888888777665322211110
Q ss_pred ----ccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001358 1019 ----TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 1019 ----~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
....... +..+.. +....+ +..++..+..|.+....+.+
T Consensus 235 Gv~~~~~~~~~--~~~l~~-~~~v~~--~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 235 GVVILRELKAN--PHRISG-FVVAQD--SDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CEECSCCCSSS--CCCEEE-EEEECT--TCEEEEEETTSCEEEEEGGG
T ss_pred CEECeeecCCC--CceEEE-EEEeCC--CCeEEEEeCCCeEEEEEhhh
Confidence 0011111 112221 223343 45677888888887777643
No 399
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=31.28 E-value=7e+02 Score=29.25 Aligned_cols=62 Identities=13% Similarity=0.084 Sum_probs=36.4
Q ss_pred CceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCC-----CCCCceEEEcc-CCCEEEEEe
Q 001358 579 NSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----LPENPRICFNK-NGTLLAVIA 641 (1092)
Q Consensus 579 ~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~-~~~~l~~~~ 641 (1092)
+.|..++++|.. ..++++...+.|+.++-. |+.-..+..... ...+.+++++| +...++++.
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~-G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPS-TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETT-TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCC-CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 378999999874 567777767776666533 333233322111 13477899998 434444443
No 400
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=31.26 E-value=23 Score=25.04 Aligned_cols=16 Identities=38% Similarity=0.845 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHhhhhc
Q 001358 4 LNKDLVFLILQFLNEE 19 (1092)
Q Consensus 4 ~~~~~~~li~q~L~~~ 19 (1092)
++++++..|+|||+..
T Consensus 1 ~~K~la~sIi~FL~~~ 16 (52)
T 4gof_A 1 MKKRLAYAIIQFLHDQ 16 (52)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHh
Confidence 4678999999999864
No 401
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=31.05 E-value=1.9e+02 Score=23.98 Aligned_cols=82 Identities=9% Similarity=-0.007 Sum_probs=41.7
Q ss_pred HhhhhcChhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCC
Q 001358 14 QFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGH 88 (1092)
Q Consensus 14 q~L~~~G~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~ 88 (1092)
.+++..-|.++...+++=.....+ ...-.-....|+|++|+.++.+........ . .+.+.+ -.-+...|
T Consensus 25 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~-~~~~~l----a~~~~~~~ 98 (133)
T 2lni_A 25 ECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-I-KGYTRK----AAALEAMK 98 (133)
T ss_dssp HHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-H-HHHHHH----HHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-h-HHHHHH----HHHHHHHh
Confidence 333444477777777665444332 122233456788888888876542221111 0 011111 11124567
Q ss_pred CHHHHHHHHHhhc
Q 001358 89 DIAKALNILKKDL 101 (1092)
Q Consensus 89 ~~~~a~~~l~~~l 101 (1092)
++.+|+..+++-+
T Consensus 99 ~~~~A~~~~~~~~ 111 (133)
T 2lni_A 99 DYTKAMDVYQKAL 111 (133)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8888888887643
No 402
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=30.63 E-value=58 Score=26.40 Aligned_cols=55 Identities=5% Similarity=-0.116 Sum_probs=28.7
Q ss_pred HhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccC-CCHHHHHHHHHhhcc
Q 001358 44 MILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDG-HDIAKALNILKKDLK 102 (1092)
Q Consensus 44 ~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~-~~~~~a~~~l~~~l~ 102 (1092)
....|+|++|+..+.+........ ....++...-.=+... |++.+|+..+++-+.
T Consensus 50 ~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 50 LYNLERYEEAVDCYNYVINVIEDE----YNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSCCT----TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHccCHHHHHHHHHHHHHhCccc----chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 445788888888876642221110 0011111222223456 788888888876443
No 403
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=30.50 E-value=46 Score=25.87 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=27.1
Q ss_pred CchhHHHHHHHHHhhhhcCh-hHHHHHHHHhcCCChh
Q 001358 2 SKLNKDLVFLILQFLNEEGF-TESAHMLERESRFYFD 37 (1092)
Q Consensus 2 ~~~~~~~~~li~q~L~~~G~-~~s~~~L~~Esg~~~~ 37 (1092)
+...+.+...|+..|.+.|| ..+...+.++.|++.+
T Consensus 27 ~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~ 63 (76)
T 2k9l_A 27 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE 63 (76)
T ss_dssp CTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH
Confidence 34567789999999999997 4566667666676554
No 404
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.47 E-value=2.2e+02 Score=24.34 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=8.4
Q ss_pred hcCcCHHHHHHHhcc
Q 001358 45 ILDGKWEDVEQYLSS 59 (1092)
Q Consensus 45 i~~G~w~~~~~~l~~ 59 (1092)
...|+|++|+..+..
T Consensus 76 ~~~~~~~~A~~~~~~ 90 (148)
T 2dba_A 76 LKLEDYDKAETEASK 90 (148)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHH
Confidence 445666666655544
No 405
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.35 E-value=2.5e+02 Score=28.39 Aligned_cols=108 Identities=8% Similarity=0.096 Sum_probs=63.0
Q ss_pred hHHHHHHHHHhhhhcC-hhHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhh
Q 001358 5 NKDLVFLILQFLNEEG-FTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1092)
Q Consensus 5 ~~~~~~li~q~L~~~G-~~~s~~~L~~Esg~~~~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 81 (1092)
+.++..++.+.+...| |.++...|++ +-..+ .....-....|++++|+..+..+....... ..+.+. ..+
T Consensus 100 ~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~----~~~~l~-~a~ 172 (291)
T 3mkr_A 100 NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA----TLTQLA-TAW 172 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc----HHHHHH-HHH
Confidence 4455555656666777 8888888887 33344 233344567899999999988753322221 212111 122
Q ss_pred hhh-ccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhc
Q 001358 82 FEA-LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120 (1092)
Q Consensus 82 ~El-l~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1092)
+.+ ...|++++|+.++++-+.. .+.++..+..|+.+++
T Consensus 173 ~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~ 211 (291)
T 3mkr_A 173 VSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHM 211 (291)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHH
T ss_pred HHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHH
Confidence 233 3457788888888875443 3345665555555444
No 406
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=29.34 E-value=1.5e+02 Score=25.78 Aligned_cols=14 Identities=14% Similarity=-0.121 Sum_probs=7.3
Q ss_pred cCCCHHHHHHHHHh
Q 001358 86 DGHDIAKALNILKK 99 (1092)
Q Consensus 86 ~~~~~~~a~~~l~~ 99 (1092)
..|++.+|+..+++
T Consensus 64 ~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 64 SLGLYEQALQSYSY 77 (142)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHH
Confidence 34555555555554
No 407
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=28.46 E-value=1.1e+02 Score=26.18 Aligned_cols=100 Identities=13% Similarity=0.174 Sum_probs=47.5
Q ss_pred hhhhcC-hhHHHHHHHHhcCCChh-H----HHHHHHhcCcCHHHHHHHhccCCCc-CCccccchhhhHhHHhhhhhhccC
Q 001358 15 FLNEEG-FTESAHMLERESRFYFD-M----KFFEDMILDGKWEDVEQYLSSFTKV-DDNRYSTKIYFEIRKQNFFEALDG 87 (1092)
Q Consensus 15 ~L~~~G-~~~s~~~L~~Esg~~~~-~----~~~~~~i~~G~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~~q~~~Ell~~ 87 (1092)
.+...| |.++...+++=-.+..+ . ..=.-....|+|++|+..+.+.-.+ ++.......+-.++-..=.-+...
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~ 96 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQ 96 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHc
Confidence 333444 77777666553222222 1 1112345678899988887653111 111000000111111111123467
Q ss_pred CCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001358 88 HDIAKALNILKKDLKDFAPGNEELFKELA 116 (1092)
Q Consensus 88 ~~~~~a~~~l~~~l~~~~~~~~~~~~~l~ 116 (1092)
+++.+|+..+++-|.-. .+++..+.|.
T Consensus 97 ~~~~~A~~~~~kal~~~--~~~~~~~~l~ 123 (127)
T 4gcn_A 97 NDLSLAVQWFHRSLSEF--RDPELVKKVK 123 (127)
T ss_dssp TCHHHHHHHHHHHHHHS--CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC--cCHHHHHHHH
Confidence 88889988888765522 2455555444
No 408
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=28.45 E-value=4.9e+02 Score=26.54 Aligned_cols=113 Identities=9% Similarity=0.162 Sum_probs=68.0
Q ss_pred CCCeeEEEEe---cCCCEEEEEe-CCeEEEEEcCCce-------eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001358 802 QEAVPCFALS---KNDAYLFSAS-GGVISLYIVMTFK-------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 870 (1092)
Q Consensus 802 ~~~v~~~~~s---~dg~~l~~~s-dg~i~iwd~~~~~-------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i 870 (1092)
...|.++..- .++.+++..+ .|.++-..+.... ....+... +.+..+.... +...++..+.+|.+..
T Consensus 94 ~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~-~~~~i~l~T~~G~~ir 171 (307)
T 1zi0_A 94 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS-GEDEVMLFSAEGKVVR 171 (307)
T ss_dssp TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC-CCCEEEEECCCCcEEE
Confidence 3345554332 3455566555 6998888775322 22223333 5555555544 4556777888998888
Q ss_pred EEcCCc---------eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001358 871 YNARSS---------EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 871 wd~~~~---------~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~ 917 (1092)
++...- ...-.+. ....|.++...+++..+++.+..|.++-.+++.
T Consensus 172 f~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 172 FKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 877431 1112232 345677776656667788889999999888754
No 409
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=28.00 E-value=2.4e+02 Score=22.85 Aligned_cols=103 Identities=14% Similarity=0.269 Sum_probs=49.6
Q ss_pred HHHHHHHhhhhcC-hhHHHHHHHHhcCCCh---h--HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhh
Q 001358 8 LVFLILQFLNEEG-FTESAHMLERESRFYF---D--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1092)
Q Consensus 8 ~~~li~q~L~~~G-~~~s~~~L~~Esg~~~---~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 81 (1092)
....+...+...| |.++.+.+++=..... + ...-.-....|++++|+.++.......... . ...+.+ -
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~-~~~~~l----a 84 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-A-EAWYNL----G 84 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H-HHHHHH----H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-H-HHHHHH----H
Confidence 3334444444444 6666665554322211 1 122234456788888888876642221111 0 111111 1
Q ss_pred hhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHH
Q 001358 82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQ 117 (1092)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1092)
.-+...+++.+|+..+++-+. +.+.+++....|..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALE-LDPNNAEAKQNLGN 119 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH-hCCCcHHHHHHHHH
Confidence 112357888888888876443 22234444444443
No 410
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=27.89 E-value=33 Score=27.42 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.3
Q ss_pred CCchhHHHHHHHHHhhhhc
Q 001358 1 MSKLNKDLVFLILQFLNEE 19 (1092)
Q Consensus 1 ~~~~~~~~~~li~q~L~~~ 19 (1092)
|+..+++++..|+|||++.
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6677899999999999874
No 411
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=27.49 E-value=1.6e+02 Score=26.78 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=8.3
Q ss_pred cCCCHHHHHHHHHhh
Q 001358 86 DGHDIAKALNILKKD 100 (1092)
Q Consensus 86 ~~~~~~~a~~~l~~~ 100 (1092)
..|++.+|+..+++-
T Consensus 119 ~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 119 SMGEHDKAIEAYEKT 133 (184)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhCCchhHHHHHHHH
Confidence 445555565555553
No 412
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=27.07 E-value=39 Score=33.21 Aligned_cols=89 Identities=10% Similarity=0.165 Sum_probs=48.8
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHhcCCChhHHHHHHHhcCcC---H---------HHHHHHhcc-CCCcCCccccchhhh
Q 001358 8 LVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGK---W---------EDVEQYLSS-FTKVDDNRYSTKIYF 74 (1092)
Q Consensus 8 ~~~li~q~L~~~G~~~s~~~L~~Esg~~~~~~~~~~~i~~G~---w---------~~~~~~l~~-~~~~~~~~~~~~~~~ 74 (1092)
+|+-+++||++.|+. +-|-+-+|-.-+++.+++.+..|. + ..+-.+|+. |..+++-.+. +
T Consensus 40 iv~~~i~~i~~~gl~---eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dvh~va~lLK~fLreLPePLl~----~ 112 (229)
T 3iug_A 40 VLQSCTAFIERYGIV---DGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLT----Y 112 (229)
T ss_dssp HHHHHHHHHHHHCCS---TTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCHHHHHHHHHHHHHHCSSCTTC----T
T ss_pred HHHHHHHHHHHcCCC---CCCeecCCcHHHHHHHHHHHhcCCCCCccccccccchHHHHHHHHHHHHHCCCCCcC----H
Confidence 677788999998872 344444554446889999888773 1 122233322 1223333222 2
Q ss_pred HhHHhhhhhhccCCCHHHHHHHHHhhcccc
Q 001358 75 EIRKQNFFEALDGHDIAKALNILKKDLKDF 104 (1092)
Q Consensus 75 ~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~ 104 (1092)
.+| ..|++.....+..+.+..++.-+..|
T Consensus 113 ~ly-~~~~~~~~~~~~~~~~~~l~~ll~~L 141 (229)
T 3iug_A 113 QLY-EKFSDAVSAATDEERLIKIHDVIQQL 141 (229)
T ss_dssp TTH-HHHHHHHTSSSHHHHHHHHHHHHTTS
T ss_pred HHH-HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 233 23555555555666666666655544
No 413
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=26.86 E-value=2.1e+02 Score=28.79 Aligned_cols=94 Identities=18% Similarity=0.182 Sum_probs=50.4
Q ss_pred hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCCCHHHHHH
Q 001358 21 FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALN 95 (1092)
Q Consensus 21 ~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~ 95 (1092)
|.++...+++=-....+ ...-+-.+..|++++|+..+.++....... ....-..-++++..++..+|+.
T Consensus 133 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------~~~~~~~~~~l~~~~~~~~a~~ 206 (287)
T 3qou_A 133 YTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------RYQGLVAQIELLXQAADTPEIQ 206 (287)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH------HHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch------HHHHHHHHHHHHhhcccCccHH
Confidence 66665555543222221 222345567788888888888763332211 1122233344555666677777
Q ss_pred HHHhhccccCCCCHHHHHHHHHhhcc
Q 001358 96 ILKKDLKDFAPGNEELFKELAQLLTL 121 (1092)
Q Consensus 96 ~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1092)
.|++-+. +.+.+.+....|+.++..
T Consensus 207 ~l~~al~-~~P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 207 QLQQQVA-ENPEDAALATQLALQLHQ 231 (287)
T ss_dssp HHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh-cCCccHHHHHHHHHHHHH
Confidence 7776544 233455655666666554
No 414
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=26.07 E-value=2.8e+02 Score=22.89 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=16.5
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEEcC
Q 001358 806 PCFALSKNDAYLFSASGGVISLYIVM 831 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~sdg~i~iwd~~ 831 (1092)
..+.+..||.+++...++. .+|...
T Consensus 53 ~~L~l~~dGnLvL~d~~~~-~vWss~ 77 (105)
T 4h3o_A 53 CSAVLQSDGNFVVYDSSGR-SLWASH 77 (105)
T ss_dssp CEEEECTTSCEEEECTTCC-EEEECC
T ss_pred EEEEEeCCccEEEECCCcE-EEEEec
Confidence 3577888888877654444 367654
No 415
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=25.95 E-value=1.7e+02 Score=24.26 Aligned_cols=95 Identities=8% Similarity=0.021 Sum_probs=48.9
Q ss_pred HHHHHHHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCc-CCccccchhhhHhHHhh
Q 001358 8 LVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKV-DDNRYSTKIYFEIRKQN 80 (1092)
Q Consensus 8 ~~~li~q~L~~~G-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~~q~ 80 (1092)
....+.+.+...| |.++...+++=.....+ ...-.-....|+|++|+.++...... +...........++-..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3344444445555 77777666653322111 12223345679999999998764221 11100000011222222
Q ss_pred hhhhccCCCHHHHHHHHHhhcc
Q 001358 81 FFEALDGHDIAKALNILKKDLK 102 (1092)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~l~ 102 (1092)
-.-+...|++.+|+..+++-+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 2223568999999999987544
No 416
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=25.81 E-value=1.3e+02 Score=26.98 Aligned_cols=87 Identities=10% Similarity=0.067 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhhcChhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhh
Q 001358 6 KDLVFLILQFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1092)
Q Consensus 6 ~~~~~li~q~L~~~G~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~ 80 (1092)
++|-.-|.++|++-+.-+-+ ..+..+ ...=......|+|++|+..+.....++... ..+ +-..
T Consensus 9 ~~~~~~l~~~~~~~~~l~~a------l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~----~~~--~~~l 76 (151)
T 3gyz_A 9 ESISTAVIDAINSGATLKDI------NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN----VDY--IMGL 76 (151)
T ss_dssp CHHHHHHHHHHHTSCCTGGG------CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHH--HHHH
T ss_pred HHHHHHHHHHHHCCCCHHHH------hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHH--HHHH
Confidence 34566777777776632222 122222 111134456788888888887752222221 111 1111
Q ss_pred hhhhccCCCHHHHHHHHHhh--cccc
Q 001358 81 FFEALDGHDIAKALNILKKD--LKDF 104 (1092)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~--l~~~ 104 (1092)
=.=+...|++.+|+..+++- +.|-
T Consensus 77 g~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 77 AAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 12234678888888888874 5554
No 417
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=25.79 E-value=2.6e+02 Score=23.37 Aligned_cols=88 Identities=9% Similarity=0.121 Sum_probs=45.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCcee
Q 001358 890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC 969 (1092)
Q Consensus 890 ~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~ 969 (1092)
..+.+..||++++... ++ +|...+.. .+ .-..+.+..+|.+++...++...+|...+.
T Consensus 22 ~~L~~q~dGnLvl~~~-~~---vW~snt~~----------~~------~~~~l~l~~dGNLVl~~~~~~~~vW~S~t~-- 79 (111)
T 3mez_A 22 AAFVMQGDCNLVLYNE-AG---GFQSNTHG----------RG------VDCTLRLNNRGQLEIHSANSNTPVWVYPRS-- 79 (111)
T ss_dssp EEEEECTTSCEEEECS-SC---CEECCCTT----------SC------SSCEEEECTTSCEEEECSSCSSCSEEESSS--
T ss_pred EEEEEccCCeEEEECC-CC---EEECCccc----------CC------cCEEEEEcCCCcEEEEeCCCCEEEEEeccc--
Confidence 4566677777766432 22 77755421 00 123567888888777654444456754321
Q ss_pred eeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001358 970 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 970 ~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~ 1009 (1092)
.........+.+.+||.+++-+ -.+|...+
T Consensus 80 -----~~~~~~~~~l~Lq~dGNlvly~-----~~~W~s~t 109 (111)
T 3mez_A 80 -----VNTVRGNYAATLGPDQHVTIYG-----PAIWSTPA 109 (111)
T ss_dssp -----CCCCSSCCEEEECTTSCEEEEC-----SEEEECCC
T ss_pred -----cCCCCcCEEEEECCCCeEEEec-----cCEEccCC
Confidence 0011123445666777766653 24565544
No 418
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=25.29 E-value=1.4e+02 Score=26.61 Aligned_cols=89 Identities=13% Similarity=0.027 Sum_probs=45.1
Q ss_pred HHHHHHHHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhh
Q 001358 7 DLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1092)
Q Consensus 7 ~~~~li~q~L~~~G-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~ 80 (1092)
+....+...+...| |.++...+++=-.+..+ ...=.-....|+|++|+..+.+...++... . .+.+. .
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~-~~~~~----l 85 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-S-KAWSR----L 85 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H-HHHHH----H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-H-HHHHH----H
Confidence 34444444444455 77777666553332221 122233456788888888877642222111 0 01111 1
Q ss_pred hhhhccCCCHHHHHHHHHhhc
Q 001358 81 FFEALDGHDIAKALNILKKDL 101 (1092)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~l 101 (1092)
-.=+...|++.+|+..+++-+
T Consensus 86 g~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHH
Confidence 112245688888888887643
No 419
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.23 E-value=1.3e+02 Score=28.61 Aligned_cols=101 Identities=12% Similarity=0.198 Sum_probs=63.1
Q ss_pred cchhhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHH
Q 001358 69 STKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLEL 148 (1092)
Q Consensus 69 ~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~R~~l~~~l 148 (1092)
...+.-+|.+|..+=-+++|++.+|..+|+.-+..-. .+...=..|..++.+.+. .++-+-++ |-..+++++
T Consensus 109 ~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~-s~~kLr~kL~~II~~Kd~-~H~~lqnF------Sy~~~~~ki 180 (235)
T 3bu8_A 109 VESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDP-TTQKLRNDLLNIIREKNL-AHPVIQNF------SYETFQQKM 180 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCG-GGHHHHHHHHHHHHHTCT-TSHHHHTC------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCC-CchHHHHHHHHHHhccCc-ccHHHHhc------cHHHHHHHH
Confidence 4458899999999999999999999999998777422 122233367767666543 22222222 345666777
Q ss_pred HhhcccCcccccccCCCCCccHHHHHHHHHHHHHHHhcCCC
Q 001358 149 KQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCAN 189 (1092)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~~~~ 189 (1092)
..++...+= .++. -||..|.+-+.++|..
T Consensus 181 ~~fve~~~~---------~a~~---FLL~~A~Kv~ks~~~~ 209 (235)
T 3bu8_A 181 LRFLESHLD---------DAEP---YLLTMAKKALKSESAA 209 (235)
T ss_dssp HHHHHTTSC---------CCCC---HHHHHHHHHTTTC---
T ss_pred HHHHHHHhc---------ccch---HHHHHHHHHHhhcccc
Confidence 766654321 2222 4677788888777755
No 420
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=24.87 E-value=1.6e+02 Score=24.96 Aligned_cols=89 Identities=12% Similarity=-0.096 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHh
Q 001358 6 KDLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ 79 (1092)
Q Consensus 6 ~~~~~li~q~L~~~G-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q 79 (1092)
.+....+...+...| |.++...+++=-.+..+ ...=.-....|+|++|+..+.....+.... . .+.+.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~-~~~~~l--- 83 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-V-KAHFFL--- 83 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H-HHHHHH---
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-H-HHHHHH---
Confidence 344444455555555 77777666553322221 122233456889999988887642222211 0 111111
Q ss_pred hhhhhccCCCHHHHHHHHHhh
Q 001358 80 NFFEALDGHDIAKALNILKKD 100 (1092)
Q Consensus 80 ~~~Ell~~~~~~~a~~~l~~~ 100 (1092)
-.=++..|++.+|+..+++-
T Consensus 84 -~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 84 -GQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp -HHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHhhHHHHHHHHHHH
Confidence 11234568888888888864
No 421
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=24.40 E-value=3e+02 Score=26.43 Aligned_cols=15 Identities=0% Similarity=-0.194 Sum_probs=8.3
Q ss_pred hcCcCHHHHHHHhcc
Q 001358 45 ILDGKWEDVEQYLSS 59 (1092)
Q Consensus 45 i~~G~w~~~~~~l~~ 59 (1092)
...|+|++|+.++..
T Consensus 82 ~~~~~~~~A~~~~~~ 96 (252)
T 2ho1_A 82 QTEMEPKLADEEYRK 96 (252)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 445566666555544
No 422
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=24.01 E-value=2.8e+02 Score=22.14 Aligned_cols=99 Identities=10% Similarity=-0.005 Sum_probs=48.0
Q ss_pred HHHHhhhhcChhHHHHHHHHhcCCCh---h--HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhc
Q 001358 11 LILQFLNEEGFTESAHMLERESRFYF---D--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEAL 85 (1092)
Q Consensus 11 li~q~L~~~G~~~s~~~L~~Esg~~~---~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell 85 (1092)
+...++..--|.++...+++=-.... + ...=.-....|+|++|+..+.......... . .+.+. .-.=+.
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~-~~~~~----~a~~~~ 83 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-G-KGYSR----KAAALE 83 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-H-HHHHH----HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-H-HHHHH----HHHHHH
Confidence 33344444447777766665322211 1 111233445788888888877642221111 0 01111 111134
Q ss_pred cCCCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001358 86 DGHDIAKALNILKKDLKDFAPGNEELFKELA 116 (1092)
Q Consensus 86 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~ 116 (1092)
..|++.+|+..+++-+. +.+.++.....+.
T Consensus 84 ~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~ 113 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK-HEANNPQLKEGLQ 113 (118)
T ss_dssp HTTCHHHHHHHHHHHHT-TCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH-cCCCCHHHHHHHH
Confidence 57888888888877543 2223444444443
No 423
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=23.53 E-value=3e+02 Score=22.43 Aligned_cols=89 Identities=13% Similarity=-0.005 Sum_probs=42.5
Q ss_pred HHHHHHHhhhhcC-hhHHHHHHHHhcCCCh---h--HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhh
Q 001358 8 LVFLILQFLNEEG-FTESAHMLERESRFYF---D--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1092)
Q Consensus 8 ~~~li~q~L~~~G-~~~s~~~L~~Esg~~~---~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 81 (1092)
....+...+...| |.++...+++=..... + ...-.-....|+|++|+..+.......... . .+.+.+ -
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~-~~~~~~----~ 87 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-S-KAYGRM----G 87 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H-HHHHHH----H
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-H-HHHHHH----H
Confidence 3334444444444 6666655554222111 1 122233456788888888876642221111 0 011111 1
Q ss_pred hhhccCCCHHHHHHHHHhhcc
Q 001358 82 FEALDGHDIAKALNILKKDLK 102 (1092)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~l~ 102 (1092)
.=+...+++.+|+..+++-+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 112356788888888876433
No 424
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=23.13 E-value=8.5e+02 Score=27.48 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=28.5
Q ss_pred CceEEEEEcCC--CCEEEEEeCC----CeEEEEECCCCceEEEEeCCC
Q 001358 579 NSVSVVHFDTA--KDQILAAGDD----HVIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 579 ~~v~~~~~~~~--~~~l~~~s~d----g~i~iwd~~~~~~~~~~~~~~ 620 (1092)
..+....|.|+ +-.++.+.++ .-..+.|..+|+.+.......
T Consensus 368 Da~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~ 415 (620)
T 2zuy_A 368 DAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGT 415 (620)
T ss_dssp SCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSS
T ss_pred ceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCcc
Confidence 66666777787 3445555544 256788999999998876543
No 425
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=23.06 E-value=5.2e+02 Score=28.98 Aligned_cols=75 Identities=8% Similarity=-0.042 Sum_probs=45.8
Q ss_pred ecCCCEEEEEeC-------CCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCC-CC--CEEEEEeCCCcEE
Q 001358 987 SCDCRMVFTSFV-------DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL-KP--TQFAVGLTNGEVY 1056 (1092)
Q Consensus 987 s~dg~~l~t~s~-------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~-~~--~~l~~~~~dg~v~ 1056 (1092)
-.+|++++.-+. ...|+|.|+.+|.++.++....... . ...+....+ .+.+ |+ +.+.+|...|.|.
T Consensus 203 ~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~~~~-~--~~Gls~~~~-~D~d~Dg~~D~~YaGDl~GnlW 278 (570)
T 3hx6_A 203 LHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTGRTG-V--PNGLSSPRL-ADNNSDGVADYAYAGDLQGNLW 278 (570)
T ss_dssp CTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECCSTT-S--CCCEEEEEE-ECTTSSSBCCEEEEEETTSEEE
T ss_pred ecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCCCCc-c--CCccccceE-EecCCCCceeEEEEEeCCCcEE
Confidence 346776554332 3479999999999998886432100 0 111222222 3321 11 4789999999999
Q ss_pred EEecCCCCC
Q 001358 1057 VIEPNEPGD 1065 (1092)
Q Consensus 1057 ~w~~~~~~~ 1065 (1092)
-+|+....+
T Consensus 279 RfDl~~~~~ 287 (570)
T 3hx6_A 279 RFDLIAGKV 287 (570)
T ss_dssp EEECSCSSC
T ss_pred EEEcCCCCc
Confidence 999987665
No 426
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=22.99 E-value=4.6e+02 Score=24.98 Aligned_cols=110 Identities=13% Similarity=0.005 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhhcC-hhHHHHHHHHhcCCCh---h--HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHh
Q 001358 6 KDLVFLILQFLNEEG-FTESAHMLERESRFYF---D--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ 79 (1092)
Q Consensus 6 ~~~~~li~q~L~~~G-~~~s~~~L~~Esg~~~---~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q 79 (1092)
.++...+...+...| |.++.+.+++=..... + ...-.-....|+|++|+.++.+....+.. +. ...++..
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~--~~~~~~~ 146 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY--PE--RSRVFEN 146 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTC--TT--HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccC--cc--cHHHHHH
Confidence 344555555556666 6666665554222211 1 22234455688888888888765221011 11 1111111
Q ss_pred hhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhc
Q 001358 80 NFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120 (1092)
Q Consensus 80 ~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1092)
.-.-++..|++.+|+..+++-+.- .+.+...+..|+.+..
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 147 LGLVSLQMKKPAQAKEYFEKSLRL-NRNQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-CcccHHHHHHHHHHHH
Confidence 122234578888888888875432 2234444445555443
No 427
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=22.27 E-value=2.3e+02 Score=26.93 Aligned_cols=91 Identities=13% Similarity=0.002 Sum_probs=45.4
Q ss_pred HHHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCC-cCCccccchhhhHhHHhhhhhh
Q 001358 12 ILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTK-VDDNRYSTKIYFEIRKQNFFEA 84 (1092)
Q Consensus 12 i~q~L~~~G-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~-~~~~~~~~~~~~~i~~q~~~El 84 (1092)
+...+..+| |.++...+++=.....+ ...=.-....|++++|+..+..... .+++......+..++...=.-+
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~ 127 (228)
T 4i17_A 48 CGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF 127 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH
Confidence 344444444 56665555544333222 1111334556888888888876422 2222100000111222222223
Q ss_pred ccCCCHHHHHHHHHhhcc
Q 001358 85 LDGHDIAKALNILKKDLK 102 (1092)
Q Consensus 85 l~~~~~~~a~~~l~~~l~ 102 (1092)
...|++.+|+..+++-+.
T Consensus 128 ~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 128 QQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHTTCHHHHHHHHHHHTT
T ss_pred HHhccHHHHHHHHHHHHh
Confidence 578999999999998655
No 428
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=21.72 E-value=6.7e+02 Score=25.76 Aligned_cols=200 Identities=10% Similarity=0.056 Sum_probs=100.1
Q ss_pred CCeeEEE-EecCCCEEEEEeCCeEEEEEcC---C------ceeeEE---ecCCCCCeEEEEEcCC--CCCEEEEEeCCCe
Q 001358 803 EAVPCFA-LSKNDAYLFSASGGVISLYIVM---T------FKTILT---IMPPSPTATSLAFNPH--DNNVIAIGMDDST 867 (1092)
Q Consensus 803 ~~v~~~~-~s~dg~~l~~~sdg~i~iwd~~---~------~~~~~~---~~~~~~~i~~l~~s~~--d~~~lasg~~dg~ 867 (1092)
..+..+. .+....+++..+.|.+.-+... . |..+.. +. ....|.++..-++ ++.+++.++.+|.
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 3343433 3444445555556876555442 1 222211 22 2334655433331 2567889999999
Q ss_pred EEEEEcCC--------ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee-----eeeeeecCCCCcC
Q 001358 868 ILIYNARS--------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-----TCRSLQTPDGVMT 934 (1092)
Q Consensus 868 v~iwd~~~--------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~ 934 (1092)
++--.+.. |...-.+.. .+.+..+....+...++..+.+|.+..+....-... ....+....
T Consensus 118 iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~---- 192 (323)
T 1wp5_A 118 VKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE---- 192 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT----
T ss_pred EEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCC----
Confidence 99988753 222223332 256666666555667888889998888877542110 011111111
Q ss_pred CCCCceEEEEecCCC--EEEEEeCCcEEEEEcCCce-------eeeee--ccCCCcCEEEEEEecCCCEEEEEeCCCcEE
Q 001358 935 LAPSETHIQFHKDQT--RFLLVHETHLAIYEAEELT-------CLKQW--FPISSVPISQATFSCDCRMVFTSFVDGTLS 1003 (1092)
Q Consensus 935 ~~~~v~~l~~s~dg~--~la~~~d~~v~lwd~~~~~-------~~~~~--~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~ 1003 (1092)
...|.++..-+++. +++++..|..+..++..-. -+... .......+..+....++..++..+..|.+.
T Consensus 193 -~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~i 271 (323)
T 1wp5_A 193 -GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIE 271 (323)
T ss_dssp -TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEE
T ss_pred -CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEE
Confidence 13466665544444 4444677777777664311 11111 111122454433333344455566666665
Q ss_pred EEECCC
Q 001358 1004 IHEASN 1009 (1092)
Q Consensus 1004 vwd~~~ 1009 (1092)
-..+..
T Consensus 272 r~~~~~ 277 (323)
T 1wp5_A 272 TIKVGD 277 (323)
T ss_dssp EEEGGG
T ss_pred EEEhhh
Confidence 555544
No 429
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=21.68 E-value=1.2e+02 Score=25.68 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=41.9
Q ss_pred HHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhc
Q 001358 42 EDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120 (1092)
Q Consensus 42 ~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1092)
...+..|+|++|+..+.+........ . .+.+.+ =.. +...|++.+|+..+++-+. +.+.+.+-+..|+.++.
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~-~-~a~~~l-g~~---~~~~g~~~~A~~~~~~al~-l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPER-E-EAWRSL-GLT---QAENEKDGLAIIALNHARM-LDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTC-H-HHHHHH-HHH---HHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCC-H-HHHHHH-HHH---HHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH
Confidence 45677899999999987742222211 1 122221 112 2457999999999987544 33345555555555443
No 430
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=21.56 E-value=8.4 Score=32.23 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=25.4
Q ss_pred HHHhcCCChhHHHHHHHhcCcCHHHHHHHhccC
Q 001358 28 LERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1092)
Q Consensus 28 L~~Esg~~~~~~~~~~~i~~G~w~~~~~~l~~~ 60 (1092)
+-+|||+++++..+-..|. |+|+++.+.++.+
T Consensus 28 vl~~sGl~y~~~pmgT~IE-Ge~devm~vv~~~ 59 (104)
T 2ibo_A 28 YLQTQEVTMVVTPFETVLE-GEFDELMRILKEA 59 (104)
T ss_dssp HHHHSSSEEEECSSCEEEE-EEHHHHHHHHHHH
T ss_pred HHHHcCCCeEecCCccEEE-cCHHHHHHHHHHH
Confidence 3358999998777777665 9999999998754
No 431
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=21.28 E-value=2.3e+02 Score=23.35 Aligned_cols=101 Identities=12% Similarity=0.210 Sum_probs=51.4
Q ss_pred HHhhhhcC-hhHHHHHHHHhcCCCh---h--HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhcc
Q 001358 13 LQFLNEEG-FTESAHMLERESRFYF---D--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALD 86 (1092)
Q Consensus 13 ~q~L~~~G-~~~s~~~L~~Esg~~~---~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~ 86 (1092)
...+...| |.++...+++=..... + ...-.-....|+|++|+.++.......... . ...+.+ -.-+..
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~-~~~~~l----~~~~~~ 81 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-A-EAWYNL----GNAYYK 81 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-H-HHHHHH----HHHHHT
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-h-HHHHHH----HHHHHH
Confidence 33333344 6666665554222111 1 122233456789999999887642221111 0 111111 112356
Q ss_pred CCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhc
Q 001358 87 GHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120 (1092)
Q Consensus 87 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1092)
.|++.+|+..+++-+... +.+...+..++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 114 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 788999999998865532 234455555655544
No 432
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.28 E-value=1e+02 Score=26.84 Aligned_cols=24 Identities=29% Similarity=0.086 Sum_probs=17.5
Q ss_pred hhhhhccCCCHHHHHHHHHhhccc
Q 001358 80 NFFEALDGHDIAKALNILKKDLKD 103 (1092)
Q Consensus 80 ~~~Ell~~~~~~~a~~~l~~~l~~ 103 (1092)
..-||+..++..+|.+++++--.|
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL~~p 36 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKELEVP 36 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCC
Confidence 345777888999999999873334
No 433
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=21.19 E-value=61 Score=25.56 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhhhcChhHHHHHHHHhcCCChh
Q 001358 6 KDLVFLILQFLNEEGFTESAHMLERESRFYFD 37 (1092)
Q Consensus 6 ~~~~~li~q~L~~~G~~~s~~~L~~Esg~~~~ 37 (1092)
.++.+=|+++|++.| .++..|-+|-|++-.
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 467788889999999 888999999998764
No 434
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=21.11 E-value=8.6 Score=32.22 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhcCcCHHHHHHHhccC
Q 001358 23 ESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1092)
Q Consensus 23 ~s~~~L~~Esg~~~~~~~~~~~i~~G~w~~~~~~l~~~ 60 (1092)
..+..+-+|||+++++.-+-..|. |+|+++.+.++.+
T Consensus 27 a~~i~~i~~sGl~y~~~pm~T~IE-Ge~devm~vv~~~ 63 (104)
T 1lxj_A 27 ALIEKKIRESPLKSTLHSAGTTIE-GPWDDVMGLIGEI 63 (104)
T ss_dssp HHHHHHHHTSSSEEEEETTEEEEE-EEHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEeCCCccEEE-cCHHHHHHHHHHH
Confidence 334445568999998777777665 9999999998653
No 435
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.96 E-value=1e+02 Score=27.82 Aligned_cols=21 Identities=33% Similarity=0.180 Sum_probs=16.5
Q ss_pred hhhhhccCCCHHHHHHHHHhh
Q 001358 80 NFFEALDGHDIAKALNILKKD 100 (1092)
Q Consensus 80 ~~~Ell~~~~~~~a~~~l~~~ 100 (1092)
..-||+..++..+|.+++++-
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 345777888999999999873
No 436
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=20.73 E-value=62 Score=30.96 Aligned_cols=90 Identities=18% Similarity=0.270 Sum_probs=45.4
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHhcCCChhHHHHHHHhcCcC----HH------HHHHHhcc-CCCcCCccccchhhhHh
Q 001358 8 LVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGK----WE------DVEQYLSS-FTKVDDNRYSTKIYFEI 76 (1092)
Q Consensus 8 ~~~li~q~L~~~G~~~s~~~L~~Esg~~~~~~~~~~~i~~G~----w~------~~~~~l~~-~~~~~~~~~~~~~~~~i 76 (1092)
+|.-+++||++.|+.. +-|-+-+|-.-+++.+++.+..|. +. .+-.+|+. +..+++-. +-+.+
T Consensus 20 iv~~~i~~l~~~gl~~--eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~flreLpePL----i~~~l 93 (201)
T 2ovj_A 20 IVVHCVNEIEQRGLTE--TGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPL----LTFRL 93 (201)
T ss_dssp HHHHHHHHHHHHTTTS--TTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHHHTSSSCT----TCTTT
T ss_pred HHHHHHHHHHHhCCCc--CceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHhCCCCC----CCHHH
Confidence 5666778888877531 222233333335888888887773 11 12222222 12233332 22334
Q ss_pred HHhhhhhhccCCCHHHHHHHHHhhcccc
Q 001358 77 RKQNFFEALDGHDIAKALNILKKDLKDF 104 (1092)
Q Consensus 77 ~~q~~~Ell~~~~~~~a~~~l~~~l~~~ 104 (1092)
|+ .|++.....+..+.+..++.-+..|
T Consensus 94 ~~-~~~~~~~~~~~~~~~~~l~~ll~~L 120 (201)
T 2ovj_A 94 NR-AFMEAAEITDEDNSIAAMYQAVGEL 120 (201)
T ss_dssp HH-HHHHHHHCSSHHHHHHHHHHHHHTS
T ss_pred HH-HHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 43 4666665555555566666555444
No 437
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=20.71 E-value=10 Score=32.00 Aligned_cols=33 Identities=9% Similarity=0.167 Sum_probs=25.4
Q ss_pred HHHHhcCCChhHHHHHHHhcCcCHHHHHHHhccC
Q 001358 27 MLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1092)
Q Consensus 27 ~L~~Esg~~~~~~~~~~~i~~G~w~~~~~~l~~~ 60 (1092)
.+-+|||+++++.-+-..|. |+|+++.+.++.+
T Consensus 32 ~vl~~sGl~y~~~pmgT~IE-Ge~devm~vv~~~ 64 (109)
T 1yqh_A 32 EVVQQSGVRYEVGAMETTLE-GELDVLLDVVKRA 64 (109)
T ss_dssp HHHHHSCSEEEECSSCEEEE-ECHHHHHHHHHHH
T ss_pred HHHHHcCCCeEecCCccEEE-cCHHHHHHHHHHH
Confidence 33458999998777777665 9999999998753
No 438
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=20.68 E-value=2.1e+02 Score=33.71 Aligned_cols=109 Identities=11% Similarity=0.156 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhhhhcC-hhHHHHHHHHhcCCChh----HHHH-HHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHH
Q 001358 5 NKDLVFLILQFLNEEG-FTESAHMLERESRFYFD----MKFF-EDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRK 78 (1092)
Q Consensus 5 ~~~~~~li~q~L~~~G-~~~s~~~L~~Esg~~~~----~~~~-~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~ 78 (1092)
..|....+...+.++| |.++.+.+++=-.+..+ ...+ .-....|++++|+..+.+.-.+.... ...+-
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~ 81 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------ADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Confidence 4556666777777777 67776665553332222 1111 22345688888888776531111111 11111
Q ss_pred hhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhc
Q 001358 79 QNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120 (1092)
Q Consensus 79 q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1092)
..=.=+.+.|++++|+..+++-+. +.+.+.+-+..|+.++.
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~-l~P~~~~a~~~Lg~~~~ 122 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQ-INPAFADAHSNLASIHK 122 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH
Confidence 111223456777777777776433 22334455555555443
Done!