Query 001359
Match_columns 1092
No_of_seqs 282 out of 1296
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 00:06:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j5w_A Glycyl-tRNA synthetase 100.0 1E-163 5E-168 1281.5 21.2 289 71-359 10-298 (298)
2 3rf1_A Glycyl-tRNA synthetase 100.0 4E-161 2E-165 1268.2 17.7 292 63-354 12-309 (311)
3 2ztg_A Alanyl-tRNA synthetase; 100.0 9.5E-36 3.2E-40 357.7 9.1 181 72-260 58-282 (739)
4 2zze_A Alanyl-tRNA synthetase; 96.5 0.0069 2.4E-07 74.2 10.3 182 72-260 55-288 (752)
5 1yfs_A Alanyl-tRNA synthetase; 96.4 0.0074 2.5E-07 69.9 9.3 173 74-250 3-239 (465)
6 3dsq_A Pyrrolysyl-tRNA synthet 96.4 0.017 5.8E-07 63.4 11.7 162 75-251 72-274 (288)
7 2o08_A BH1327 protein; putativ 95.8 0.04 1.4E-06 56.2 10.7 95 740-842 18-131 (188)
8 3hy0_A Alanyl-tRNA synthetase; 95.8 0.027 9.1E-07 65.0 10.0 171 74-250 2-256 (441)
9 2ogi_A Hypothetical protein SA 95.7 0.041 1.4E-06 56.6 10.3 96 739-842 25-139 (196)
10 3ccg_A HD superfamily hydrolas 95.5 0.053 1.8E-06 55.4 10.2 95 740-842 19-133 (190)
11 3dto_A BH2835 protein; all alp 95.3 0.045 1.5E-06 58.1 9.1 101 738-844 23-127 (223)
12 2pq7_A Predicted HD superfamil 95.2 0.056 1.9E-06 56.3 9.5 103 735-845 28-138 (220)
13 3b57_A LIN1889 protein; Q92AN1 94.5 0.14 4.9E-06 53.1 10.0 104 737-845 22-129 (209)
14 3qtc_A Pyrrolysyl-tRNA synthet 94.3 0.3 1E-05 53.3 12.6 160 76-251 79-277 (290)
15 2pjq_A Uncharacterized protein 94.3 0.098 3.4E-06 55.4 8.5 103 737-844 27-133 (231)
16 3tm8_A BD1817, uncharacterized 94.1 0.21 7.3E-06 55.4 11.1 109 736-846 162-292 (328)
17 3hc1_A Uncharacterized HDOD do 94.0 0.43 1.5E-05 52.1 13.2 142 739-891 117-289 (305)
18 3djb_A Hydrolase, HD family; a 92.8 0.11 3.9E-06 55.0 5.8 101 738-844 23-127 (223)
19 1vqr_A Hypothetical protein CJ 92.1 0.75 2.6E-05 49.9 11.4 134 739-887 123-282 (297)
20 3m1t_A Putative phosphohydrola 92.0 0.66 2.3E-05 50.0 10.7 103 739-847 104-230 (275)
21 2qgs_A Protein Se1688; alpha-h 91.0 0.77 2.6E-05 48.2 9.7 102 738-845 23-129 (225)
22 3i7a_A Putative metal-dependen 90.6 1 3.6E-05 48.4 10.5 101 739-842 116-236 (281)
23 1ati_A Glycyl-tRNA synthetase; 89.1 0.79 2.7E-05 53.9 8.7 128 110-242 198-372 (505)
24 3gw7_A Uncharacterized protein 89.0 0.3 1E-05 52.3 4.6 121 739-865 24-162 (239)
25 2du3_A O-phosphoseryl-tRNA syn 85.1 2.6 8.8E-05 50.2 9.9 120 117-250 202-346 (534)
26 1f7u_A Arginyl-tRNA synthetase 83.8 0.68 2.3E-05 55.8 4.3 91 956-1046 484-580 (607)
27 3ljx_A MMOQ response regulator 83.7 2.6 8.9E-05 45.7 8.5 103 740-845 108-233 (288)
28 3mem_A Putative signal transdu 80.9 9.5 0.00033 44.1 12.3 110 737-852 275-411 (457)
29 3l4g_A Phenylalanyl-tRNA synth 79.4 4.1 0.00014 48.3 8.6 120 117-251 344-478 (508)
30 2paq_A 5'-deoxynucleotidase YF 79.2 1.7 5.9E-05 45.2 4.9 102 738-849 29-149 (201)
31 3fnr_A Arginyl-tRNA synthetase 78.9 1.5 5.1E-05 51.2 4.8 83 964-1047 343-430 (464)
32 1iq0_A Arginyl-tRNA synthetase 77.7 1 3.5E-05 54.0 3.0 87 957-1046 469-565 (592)
33 2zue_A Arginyl-tRNA synthetase 77.7 1.5 5.3E-05 52.9 4.5 89 957-1046 503-602 (629)
34 1nnh_A Asparaginyl-tRNA synthe 73.9 1.5 5.1E-05 48.1 2.8 56 196-254 201-285 (294)
35 2hek_A Hypothetical protein; p 71.0 9.3 0.00032 43.4 8.5 138 706-859 21-181 (371)
36 1n9w_A Aspartyl-tRNA synthetas 56.9 6.2 0.00021 45.5 3.6 59 195-253 332-413 (422)
37 2dq0_A Seryl-tRNA synthetase; 54.4 18 0.0006 42.2 6.9 80 117-206 269-364 (455)
38 4ah6_A Aspartate--tRNA ligase, 52.4 9.6 0.00033 46.1 4.4 84 193-276 481-594 (617)
39 2dqb_A Deoxyguanosinetriphosph 50.1 53 0.0018 37.5 9.7 102 739-845 74-202 (376)
40 1eov_A ASPRS, aspartyl-tRNA sy 47.0 12 0.0004 44.0 3.9 58 196-253 396-478 (487)
41 2gfh_A Haloacid dehalogenase-l 46.2 9.1 0.00031 39.8 2.6 47 154-206 175-223 (260)
42 1wyd_A Hypothetical aspartyl-t 45.8 11 0.00038 43.6 3.3 59 196-254 340-421 (429)
43 3ib6_A Uncharacterized protein 44.1 10 0.00034 37.5 2.4 44 155-204 97-141 (189)
44 3pco_A Phenylalanyl-tRNA synth 39.9 4.4E+02 0.015 29.4 15.0 164 74-250 107-315 (327)
45 2dq3_A Seryl-tRNA synthetase; 38.6 46 0.0016 38.3 7.0 59 117-175 248-316 (425)
46 1yv9_A Hydrolase, haloacid deh 38.1 13 0.00043 38.3 2.1 47 153-205 181-228 (264)
47 2g80_A Protein UTR4; YEL038W, 37.2 9.4 0.00032 40.4 0.9 45 154-205 186-231 (253)
48 2q14_A Phosphohydrolase; BT420 37.2 59 0.002 37.4 7.6 116 732-859 47-183 (410)
49 1h4v_B Histidyl-tRNA synthetas 34.8 47 0.0016 37.4 6.2 61 117-185 98-163 (421)
50 2cqz_A 177AA long hypothetical 32.9 14 0.00047 37.5 1.3 102 737-853 29-141 (177)
51 2du7_A O-phosphoseryl-tRNA syn 32.5 2.4E+02 0.0084 33.7 11.9 290 117-460 214-541 (549)
52 3vbb_A Seryl-tRNA synthetase, 32.4 63 0.0021 38.4 6.9 83 118-207 289-386 (522)
53 1qe0_A Histidyl-tRNA synthetas 31.9 31 0.0011 38.8 4.1 60 117-184 98-162 (420)
54 2zg6_A Putative uncharacterize 31.3 27 0.00092 34.7 3.1 43 154-205 149-192 (220)
55 3m4p_A Ehasnrs, asparaginyl-tR 31.1 21 0.00073 41.5 2.7 58 197-254 367-448 (456)
56 3vay_A HAD-superfamily hydrola 30.4 47 0.0016 32.5 4.7 82 110-204 111-198 (230)
57 1r89_A TRNA nucleotidyltransfe 30.0 93 0.0032 36.2 7.6 115 387-517 277-392 (437)
58 3smv_A S-(-)-azetidine-2-carbo 30.0 22 0.00074 34.9 2.1 49 154-205 151-200 (240)
59 4e51_A Histidine--tRNA ligase; 28.9 46 0.0016 38.6 4.9 53 118-174 128-185 (467)
60 1yns_A E-1 enzyme; hydrolase f 28.9 16 0.00055 38.3 1.0 45 154-205 186-231 (261)
61 3lss_A Seryl-tRNA synthetase; 28.7 89 0.003 36.8 7.3 82 118-207 287-384 (484)
62 2om6_A Probable phosphoserine 26.5 34 0.0011 33.4 2.8 44 154-203 157-200 (235)
63 2odr_B Phosphoseryl-tRNA synth 26.1 3E+02 0.01 33.6 11.2 121 117-247 221-354 (648)
64 2odr_D Phosphoseryl-tRNA synth 25.8 3E+02 0.01 33.7 11.2 121 117-247 221-354 (685)
65 3ed5_A YFNB; APC60080, bacillu 25.6 37 0.0013 33.3 3.0 77 154-246 157-235 (238)
66 2odr_A Phosphoseryl-tRNA synth 25.5 3.1E+02 0.011 33.6 11.2 121 117-247 221-354 (665)
67 2ljb_A M2 protein, BM2 protein 25.3 45 0.0015 25.7 2.6 21 855-875 3-23 (35)
68 2odr_C Phosphoseryl-tRNA synth 24.6 3.3E+02 0.011 33.6 11.2 121 117-247 221-354 (701)
69 3kbb_A Phosphorylated carbohyd 24.5 21 0.00073 35.0 1.0 43 154-203 139-182 (216)
70 1nj8_A Proline-tRNA synthetase 24.4 75 0.0026 36.8 5.6 59 115-176 120-189 (459)
71 2kih_A Matrix protein 2; S31N, 24.0 48 0.0016 26.4 2.6 21 855-875 3-23 (43)
72 1z7m_A ATP phosphoribosyltrans 23.7 95 0.0032 34.5 6.1 54 118-175 115-173 (344)
73 3i7f_A Aspartyl-tRNA synthetas 23.7 55 0.0019 39.1 4.3 58 195-253 458-539 (548)
74 4dcc_A Putative haloacid dehal 23.1 24 0.00084 35.1 1.1 89 110-206 118-218 (229)
75 2hx1_A Predicted sugar phospha 22.6 41 0.0014 35.0 2.7 47 153-205 202-253 (284)
76 1b7y_A Phers, protein (phenyla 22.6 2.8E+02 0.0096 31.2 9.6 165 75-250 102-335 (350)
77 3a5y_A GENX, putative lysyl-tR 22.4 35 0.0012 38.4 2.2 57 196-252 252-339 (345)
78 3cnh_A Hydrolase family protei 21.7 24 0.00084 34.1 0.7 43 154-203 140-182 (200)
79 2hoq_A Putative HAD-hydrolase 21.5 45 0.0015 33.4 2.7 44 155-204 150-194 (241)
80 2b0c_A Putative phosphatase; a 21.3 27 0.00094 33.7 1.0 88 111-205 98-192 (206)
81 3od1_A ATP phosphoribosyltrans 20.5 77 0.0027 36.1 4.6 54 117-174 100-158 (400)
82 2pr7_A Haloacid dehalogenase/e 20.4 26 0.00089 31.6 0.6 42 154-202 73-114 (137)
83 4gib_A Beta-phosphoglucomutase 20.1 35 0.0012 35.0 1.5 43 154-203 169-211 (250)
84 3net_A Histidyl-tRNA synthetas 20.0 70 0.0024 36.9 4.2 78 91-174 93-177 (465)
No 1
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=100.00 E-value=1.4e-163 Score=1281.51 Aligned_cols=289 Identities=53% Similarity=0.969 Sum_probs=275.7
Q ss_pred CCcchHHHHHHHHHHHHhhcCceeeeccccccccccCCHHHHhhhcCCCcceEEeecCCCCCCCCCCCCCCccccceeee
Q 001359 71 ASVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQF 150 (1092)
Q Consensus 71 ~~~~~~q~~i~~l~~~w~~~gc~~~~p~~~e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~ 150 (1092)
+..|+||+||++||+||++|||+|+||||+|||||||||+||||+||||||+||||||||||+|||||||||||||||||
T Consensus 10 ~~~~~fQ~iIl~Lq~fWa~~GC~i~QpyD~EvGAGT~~PaTfLRaLGpepw~~AYVqPsRRP~DGRYGeNPNRLq~y~Qf 89 (298)
T 1j5w_A 10 HHHMYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQY 89 (298)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCEECCCCSSCCSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTTCCSEEEEE
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEcCcccccccccCCHHHHHHhcCCCcceeeeeccCCCCCCCCcCCCchhhhhheee
Confidence 44599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCcccccccccceeeecCeeeeeeehhhhcCCcccCcceeee
Q 001359 151 QVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEI 230 (1092)
Q Consensus 151 qvi~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgwevw~~gmeitqftyfqq~gg~~~~~~~~ei 230 (1092)
||||||||+|+|||||+||++||||+++||||||||||||||||||||||||||||||||||||||||||++|+||++||
T Consensus 90 QVilKPsP~niQeLYL~SL~alGid~~~HDIRFVEDnWEsPTLGAwGLGWEVWldGMEITQFTYFQQvGGi~c~pv~~EI 169 (298)
T 1j5w_A 90 QVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEI 169 (298)
T ss_dssp EEEEESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEEETTEEEEEEEEEEEBTTBCCSSCCEEE
T ss_pred EEEECCCCccHHHHHHHHHHHhCCCcccCCceeeccCCCCCccccccccceeeEcceeeehhhhhhhcCCcccCccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhCCCccceeeeCCCCceecccccchhhhhccccccCCHHHHHHHHHHHHHHHHHHHHcCCCcchhhhHH
Q 001359 231 TYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLL 310 (1092)
Q Consensus 231 tygleri~m~~q~~~~~~~~~~~~~~~yg~~~~~~e~e~s~y~~~~~~~~~~~~~f~~~~~e~~~~~~~~l~~pay~~~l 310 (1092)
||||||||||||+|||||||.||+++||||||+|+|+|+|+||||+||+++|+++|++||+||++|++++|++||||+||
T Consensus 170 TYGLERiamylQ~vd~vydl~w~~~vtYGdvf~q~E~E~S~ynFe~ad~~~L~~~F~~yE~E~~~ll~~~L~lPAYd~~L 249 (298)
T 1j5w_A 170 TYGLERIAMYLQGVDNVYEVQWNENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLYLPAYDYIL 249 (298)
T ss_dssp EEEHHHHHHHHHTCSSGGGCEEETTEEHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHhCCCceeccccCCCCceehhhcccHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 001359 311 KTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPL 359 (1092)
Q Consensus 311 k~sh~fn~ldar~~~~~~er~~~~~~~r~l~~~~~~~~~~~~~~~~~~~ 359 (1092)
||||+|||||||||||||||++||+|||+|||+||++|+++|+++||||
T Consensus 250 K~SH~FNlLDARgaISvtER~~yI~rvR~la~~~a~~y~~~r~~~g~pl 298 (298)
T 1j5w_A 250 KCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQANENSPA 298 (298)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHhHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999997
No 2
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=100.00 E-value=4.5e-161 Score=1268.16 Aligned_cols=292 Identities=50% Similarity=0.920 Sum_probs=281.1
Q ss_pred CCCCcccC--CCcchHHHHHHHHHHHHhhcCceeeeccccccccccCCHHHHhhhcCCCcceEEeecCCCCCCCCCCCCC
Q 001359 63 EPNNERQK--ASVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGEN 140 (1092)
Q Consensus 63 ~~~~~~~~--~~~~~~q~~i~~l~~~w~~~gc~~~~p~~~e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~n 140 (1092)
...+++.. ..+||||+||++||+||++|||+|+||||+|||||||||+||||+||||||++|||||||||+|||||||
T Consensus 12 ~~~~~~~~~~~~~~~fQ~iIl~Lq~fWa~qGC~i~QPyD~EvGAGT~hPaTfLRalGpePw~~AYVqPsRRP~DGRYGeN 91 (311)
T 3rf1_A 12 DLGTENLYFQSNAMTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLGKKPWAAAYVAPSRRPTDGRYGEN 91 (311)
T ss_dssp -----CCCCGGGSCCHHHHHHHHHHHHHTTTCEECCCCSSCCSSGGGSHHHHTTTSSSSCEEEEEEEEEECGGGCCTTCC
T ss_pred ccccccceeccCcCcHHHHHHHHHHHHHHCCCEEECCccccccCCCCCHHHHHHhcCCCcceeeeeccCCCCCCCCcCCC
Confidence 34444333 3368999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeeeEEEEcCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCcccccccccceeeecCeeeeeeehhhhcCC
Q 001359 141 PNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGS 220 (1092)
Q Consensus 141 pnrl~~~~q~qvi~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgwevw~~gmeitqftyfqq~gg 220 (1092)
||||||||||||||||||+|+|+|||+||++||||+++||||||||||||||||||||||||||||||||||||||||||
T Consensus 92 PNRLq~yyQfQVilKPsP~niQeLYL~SL~alGId~~~HDIRFVEDnWEsPTLGAWGLGWEVWldGMEVTQFTYFQQvGG 171 (311)
T 3rf1_A 92 PNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFDLKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGG 171 (311)
T ss_dssp SSCCSEEEEEEEEEESCCTTHHHHHHHHHHHTTCCGGGSCEEEEECCEEETTTTEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred chhhhhheeeEEEEcCCCccHHHHHHHHHHHhCCCccccCeeEeccCCCCCcccccccceEEEEcCeeEeeeeeeeeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcceeeehhhhHHHHHHHhCCCccceeeeCC----CCceecccccchhhhhccccccCCHHHHHHHHHHHHHHHHHH
Q 001359 221 LQLSPVSVEITYGLERILMLLQGVDHFKKIQYAD----GITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSL 296 (1092)
Q Consensus 221 ~~~~~~~~eitygleri~m~~q~~~~~~~~~~~~----~~~yg~~~~~~e~e~s~y~~~~~~~~~~~~~f~~~~~e~~~~ 296 (1092)
++|+||++||||||||||||||+|||||||.||+ +|||||||+|+|+|+|+||||+||+++|+++|++||+||++|
T Consensus 172 i~c~pv~~EITYGLERlamylQ~vd~vyDl~w~~~~~~~vtYGdvf~q~E~E~S~ynFe~ad~~~L~~~F~~~E~Ea~~l 251 (311)
T 3rf1_A 172 IAVDLVSAEITYGLERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFENSYKECKNI 251 (311)
T ss_dssp EECSSCCEEEEEEHHHHHHHHTTCSSGGGSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccceeeehhHHHHHHHHhCCCeeeeccccCCCCCCcchhhhhcccHHHHhhhCcccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 799999999999999999999999999999999999999999
Q ss_pred HHcCCCcchhhhHHhhhhccccccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 001359 297 LASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKS 354 (1092)
Q Consensus 297 ~~~~l~~pay~~~lk~sh~fn~ldar~~~~~~er~~~~~~~r~l~~~~~~~~~~~~~~ 354 (1092)
++++|++||||+||||||+|||||||||||||||++||+|||+|||+||++|+++|.+
T Consensus 252 l~~~L~lPAYd~vLK~SH~FNlLDARgaISvtER~~yI~RvR~La~~~A~~y~~~~~~ 309 (311)
T 3rf1_A 252 LEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCAEIYKKNLNE 309 (311)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCCcchHHHHHHHHhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999998865
No 3
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=9.5e-36 Score=357.65 Aligned_cols=181 Identities=18% Similarity=0.374 Sum_probs=172.6
Q ss_pred CcchHHHHHHHHHHHHhhcCceeeecccc-----------ccccccCCHHHHhhhcCCCcceEEeecCCCCCCCCCCCCC
Q 001359 72 SVPTFQQAIQRLQEYWASVGCSVMQCSNT-----------EVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGEN 140 (1092)
Q Consensus 72 ~~~~~q~~i~~l~~~w~~~gc~~~~p~~~-----------e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~n 140 (1092)
.+||+|+|+.++.+||+++||.+++||+. ..|+++|+|.++++..+|++|+++++|||+|+.| +||
T Consensus 58 ~~~~~~eir~~f~~ff~~~gh~~~~s~~lvp~~dptllft~agm~~fkp~~~~g~~~p~~~~~~~~Q~ciR~~D---~en 134 (739)
T 2ztg_A 58 KPFELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPLTISQPCIRLDD---LDS 134 (739)
T ss_dssp SCCCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTTTSSSCCSSSSEEEEEEEECGGG---GGG
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEeCCcCcCCCCCCCceeeecChhhCcHhHhCCCCCCCCCCcccccccccCcc---ccc
Confidence 45899999999999999999999999999 9999999999999999999999999999999999 899
Q ss_pred CccccceeeeEEEEcC-C---Ccc-------hHHHHHHHHHhcCCCCCCCceeEecCC-CCCcccccccccceeeecCee
Q 001359 141 PNRLQRHTQFQVILKP-D---PGN-------SQDLFIRSLSALGIDVTEHDIRFVEDN-WESPVLGAWGLGWEIWMDGME 208 (1092)
Q Consensus 141 pnrl~~~~q~qvi~kp-~---p~~-------~q~lyl~sl~~~gi~~~~hdirfved~-we~p~lgawglgwevw~~gme 208 (1092)
++|.++||||+++|++ | |+| .+++|.++|+.||||+. +|+| +|| ||++ |+||.+||||+||||
T Consensus 135 vg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~l~~~g~~~~--~i~~-~dnfW~~g--Gp~Gpc~Ei~~dg~E 209 (739)
T 2ztg_A 135 VGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLNELGVKKE--DIVY-KEEPWAGG--GNAGPCLEAIVGGLE 209 (739)
T ss_dssp TTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHHHHHTCCGG--GCEE-EEEEEEET--TEEEEEEEEEETTEE
T ss_pred CCCCCcchhhhhccCccccCCCccccchHHHHHHHHHHHHHHhCCCHH--Heee-ccCcccCC--CCCCCeeEEEECCEE
Confidence 9999999999999999 5 555 99999999988999988 7988 899 9999 999999999999999
Q ss_pred eeeeehhh----hcCCc--------ccCcceeeehhhhHHHHHHHhCCCccceeeeCC---------CCceec
Q 001359 209 ITQFTYFQ----QAGSL--------QLSPVSVEITYGLERILMLLQGVDHFKKIQYAD---------GITYGE 260 (1092)
Q Consensus 209 itqftyfq----q~gg~--------~~~~~~~eitygleri~m~~q~~~~~~~~~~~~---------~~~yg~ 260 (1092)
|+|++|+| +.|++ +|...+++.+||||||||+||||+|+||+.|.+ +++||.
T Consensus 210 iwnlVfmq~~r~~~g~~~~~~~~y~~l~~~~iDtG~GlER~~~~lqg~~s~yd~~f~pii~~~~~~~g~~y~~ 282 (739)
T 2ztg_A 210 VATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGTPTVYDAIFPEVVDTIIDNSNVSFNR 282 (739)
T ss_dssp EEEEEEEEEEECTTCCEEETTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHHHCHHHHHHHHHTSCCSSCT
T ss_pred eeeeeeEEeeecCCCceeecCccccCCCCCeEecCcCHHHHHHHHcCCCchHHhhHHHHHHHHHHHhCCCccc
Confidence 99999999 99999 899999999999999999999999999999986 777873
No 4
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=96.48 E-value=0.0069 Score=74.22 Aligned_cols=182 Identities=20% Similarity=0.291 Sum_probs=120.2
Q ss_pred CcchHHHHHHHHHHHHhhcC---ceeeeccccc---------cccc--cCCHHHHhhhcCCCcceEEeecCCCCCCCCCC
Q 001359 72 SVPTFQQAIQRLQEYWASVG---CSVMQCSNTE---------VGAG--TMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRY 137 (1092)
Q Consensus 72 ~~~~~q~~i~~l~~~w~~~g---c~~~~p~~~e---------~gag--t~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ry 137 (1092)
..||-.+|-.+--+|+.++| +.++.++..= +.|| .|-|.-.+..--|..=+++=.|+|.|=.|=
T Consensus 55 ~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp~~r~~~~QkCiR~~Dl-- 132 (752)
T 2zze_A 55 RXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRFTDI-- 132 (752)
T ss_dssp SCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCSSSSEEEEEEEECCTTG--
T ss_pred ccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCCCCCeeeeecchhhhhHhhcCCCcCCCCCCccccccceecCcH--
Confidence 45899999999999999999 9998877642 2444 454542224433333478999999995441
Q ss_pred CCCCcc-ccceeeeEEEEcCCCc-----c-----hHHHHHHHH-HhcCCCCCCCceeEecCCCCCcccccccccceeeec
Q 001359 138 GENPNR-LQRHTQFQVILKPDPG-----N-----SQDLFIRSL-SALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMD 205 (1092)
Q Consensus 138 g~npnr-l~~~~q~qvi~kp~p~-----~-----~q~lyl~sl-~~~gi~~~~hdirfved~we~p~lgawglgwevw~~ 205 (1092)
||==+ -+||+=|+.+=-=|-+ + ..+.=-+=| +.+||++. .|.+ +|||=+-- |--|==-||-.|
T Consensus 133 -enVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl~~~--ri~~-~dNfW~~G-GpcGPcsEI~~d 207 (752)
T 2zze_A 133 -DNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPE--DITF-KENPWAGG-GNAGPAFEVLYR 207 (752)
T ss_dssp -GGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGG--GEEE-EECCEEET-TEEECEEEEEET
T ss_pred -hhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhhhhhcchh--heee-ccCcccCC-CCCCCceeEEEC
Confidence 11111 2688888887655544 2 233333334 34898543 3655 67765544 777777999999
Q ss_pred Ceeeeeeehhhh---------------cCC-c-ccCcceeeehhhhHHHHHHHhCCCccceeeeCC---------CCcee
Q 001359 206 GMEITQFTYFQQ---------------AGS-L-QLSPVSVEITYGLERILMLLQGVDHFKKIQYAD---------GITYG 259 (1092)
Q Consensus 206 gmeitqftyfqq---------------~gg-~-~~~~~~~eitygleri~m~~q~~~~~~~~~~~~---------~~~yg 259 (1092)
|+||==.-+.|- .+| + +|.--++---+||||||+.|||+.|.||..+.+ +++||
T Consensus 208 glEiwNlVFmq~~~~~~~~~~~~~~~~~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt~f~pii~~~~~~~g~~y~ 287 (752)
T 2zze_A 208 GLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLXXMAGIEKI 287 (752)
T ss_dssp TEEEEEEEEEEEEECCTTCCSCCEEETTTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHHHSHHHHHHHHHHHTCCCC
T ss_pred CEeeeeeeeeeeccccccccccchhcccCCeeeeCCccccccccCHHHHHHHHcCCCchHHHHHHHHHHHHHHhcCCCcc
Confidence 999954433333 122 1 333345556699999999999999999986654 67787
Q ss_pred c
Q 001359 260 E 260 (1092)
Q Consensus 260 ~ 260 (1092)
+
T Consensus 288 ~ 288 (752)
T 2zze_A 288 D 288 (752)
T ss_dssp C
T ss_pred c
Confidence 5
No 5
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=96.38 E-value=0.0074 Score=69.93 Aligned_cols=173 Identities=22% Similarity=0.345 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHHHhhcCceeeeccccc---------cccc--cCCHHHHhhhcCCCcceEEeecCCCCC--C--CC-CC
Q 001359 74 PTFQQAIQRLQEYWASVGCSVMQCSNTE---------VGAG--TMNPLTFLRVLGPEPWNVAYVEPSIRP--D--DS-RY 137 (1092)
Q Consensus 74 ~~~q~~i~~l~~~w~~~gc~~~~p~~~e---------~gag--t~~p~t~~~~l~~~~~~~ayv~p~~rp--~--d~-ry 137 (1092)
||-++|-.+--+|+.++|+.++.++..= +.|| .|-|. |+..--|..=+++=.|+|.|- . |= -=
T Consensus 3 ~~~~eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~-flG~~~p~~~r~t~sQkCiRag~~hNDlenV 81 (465)
T 1yfs_A 3 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNV-FLGLEKRPYKRATSCQKCLRVSGKHNDLEQV 81 (465)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHH-HHTSSCCSCSEEEEEEEEECEETTEECGGGB
T ss_pred CCHHHHHHHHHHHHHhCCCEEecCCCcccCCCCCcceeccchhhhhHH-hcCCCCCCCCceeccccccccCCCcccHhhc
Confidence 7889999999999999999999877652 2455 34443 343333444579999999993 2 20 01
Q ss_pred CCCCccccceeeeEEEEcCCCcc-----hHHHHHHHH-HhcCCCC-------------------------CCCceeEe-c
Q 001359 138 GENPNRLQRHTQFQVILKPDPGN-----SQDLFIRSL-SALGIDV-------------------------TEHDIRFV-E 185 (1092)
Q Consensus 138 g~npnrl~~~~q~qvi~kp~p~~-----~q~lyl~sl-~~~gi~~-------------------------~~hdirfv-e 185 (1092)
|.. -+||+=|+.+=-=|-++ ..+.=-+=| +.+|||+ .+|=+|+= +
T Consensus 82 G~t---~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~G~p~~rI~~~g~~ 158 (465)
T 1yfs_A 82 GYT---SRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEE 158 (465)
T ss_dssp TTB---SSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHH
T ss_pred CCC---CCccchheeccccchhhhhHHHHHHHHHHHHHhhcCCCHHHeEEEEeCCCHHHHHHHHHhcCCCHHHeeeCCCc
Confidence 111 14566666554444333 111111222 1244443 23434442 5
Q ss_pred CC-CCCcccccccccceeeec-C---------eeeeeeeh--h-hhcCC--cccCcceeeehhhhHHHHHHHhCCCccce
Q 001359 186 DN-WESPVLGAWGLGWEIWMD-G---------MEITQFTY--F-QQAGS--LQLSPVSVEITYGLERILMLLQGVDHFKK 249 (1092)
Q Consensus 186 d~-we~p~lgawglgwevw~~-g---------meitqfty--f-qq~gg--~~~~~~~~eitygleri~m~~q~~~~~~~ 249 (1092)
|| |+.---|--|===|+-.| | +||==.-+ | +..+| .+|.--++---+||||||+.||||.|.||
T Consensus 159 dNFW~mG~tGPCGPCsEI~yD~g~~~~~~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmGLERla~vlQg~~snYd 238 (465)
T 1yfs_A 159 DNFWQMGDVGPCGPSSEIYVDRGEEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFE 238 (465)
T ss_dssp HHEEESSSSEEEEEEEEEEEECCTTSCHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSSGGG
T ss_pred CCcccCCCCcCCCCCeEEEEccCCCCCCCCCEEEeeeeeeeEEEecCCCccccCCCCceecCcCHHHHHHHHcCCCccch
Confidence 66 554435666767888888 7 88732222 2 22233 23333456667999999999999999999
Q ss_pred e
Q 001359 250 I 250 (1092)
Q Consensus 250 ~ 250 (1092)
.
T Consensus 239 t 239 (465)
T 1yfs_A 239 I 239 (465)
T ss_dssp S
T ss_pred h
Confidence 8
No 6
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=96.38 E-value=0.017 Score=63.44 Aligned_cols=162 Identities=17% Similarity=0.218 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHhhcCceeeecccccc-------cc------c-cCC-------------HHHH--hhhc---CCCcce
Q 001359 75 TFQQAIQRLQEYWASVGCSVMQCSNTEV-------GA------G-TMN-------------PLTF--LRVL---GPEPWN 122 (1092)
Q Consensus 75 ~~q~~i~~l~~~w~~~gc~~~~p~~~e~-------ga------g-t~~-------------p~t~--~~~l---~~~~~~ 122 (1092)
..|.++..+.+.-...|+.-...+..+- |- - .+| |... ++.. ...|.+
T Consensus 72 ~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Plr 151 (288)
T 3dsq_A 72 ALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIR 151 (288)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCEE
Confidence 3788888888888888888776665542 11 0 112 2111 1221 578999
Q ss_pred EEeecCCCCCCCCCCCCCCccccceeeeEE--EEcCCCcchH---HHHHHHHHhcCCCCCCCceeEecCCCCCccccccc
Q 001359 123 VAYVEPSIRPDDSRYGENPNRLQRHTQFQV--ILKPDPGNSQ---DLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWG 197 (1092)
Q Consensus 123 ~ayv~p~~rp~d~ryg~npnrl~~~~q~qv--i~kp~p~~~q---~lyl~sl~~~gi~~~~hdirfved~we~p~lgawg 197 (1092)
+.++.+|.|+..+-. .|+..++|.=+ +-+|++.+.. .++-.-|+.||++ +.+|+|...|-+ |
T Consensus 152 lfeiG~vFR~E~~~~----~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~LGl~----~~~~~~~s~e~~-----~ 218 (288)
T 3dsq_A 152 IFEIGTCYRKESQGA----QHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIR----EFELVTESSVVY-----G 218 (288)
T ss_dssp EEEEEEEECSCCSSS----CCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHTCC----CCEEEECCCCSS-----C
T ss_pred EEEEeeEEecCCCCC----CcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHcCCC----CcEEecCCcceE-----E
Confidence 999999999876522 34556777644 3466554444 3455667889984 589999876633 5
Q ss_pred ccceeeecCeeeeeeehhh----hcCCcccCcceeeehhhhHHHHHHHhCCCccceee
Q 001359 198 LGWEIWMDGMEITQFTYFQ----QAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQ 251 (1092)
Q Consensus 198 lgwevw~~gmeitqftyfq----q~gg~~~~~~~~eitygleri~m~~q~~~~~~~~~ 251 (1092)
-+..++++|.||--+-.=- .-.|++. |+.+ .--|||||+|.+.|+++|-++.
T Consensus 219 ~~~~l~~~~~eig~~Gv~p~vl~~~~gi~~-~~~g-fglglerl~m~~~g~~~iR~~~ 274 (288)
T 3dsq_A 219 DTVDVMKGDLELASGAMGPHFLDEKWEIFD-PWVG-LGFGLERLLMIREGTQHVQSMA 274 (288)
T ss_dssp CCEEEEETTEEEEEEEEESCTTTTTTTCCS-CEEE-EEEEHHHHHHHHHTCSCGGGGS
T ss_pred EEEEEEeCCEEEEEEEecHHHHHHhcCCCC-CeEE-EEECHHHHHHHHcCCchhhcCC
Confidence 5566777888877554111 2234443 4444 5679999999999999999875
No 7
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=95.84 E-value=0.04 Score=56.23 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccc-----------------cchhhcChhhhHHHHHHHHHh
Q 001359 740 TMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLA-----------------TSVVMEFTSLAGVMACHYALR 802 (1092)
Q Consensus 740 Sl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~LaKaDL~-----------------T~MV~EFPELQGiMG~yYA~~ 802 (1092)
..+..+.|+..+|..||..+|++.+ .+..||.|--.--. |..-.++....+.+|..+++.
T Consensus 18 ~~~~Hs~~Va~~A~~lA~~~g~~~~---~~~~agLLHDIGk~~~~~~il~~~~~~~~~l~~~e~~~~~~H~~~G~~il~~ 94 (188)
T 2o08_A 18 HRYQHTIGVMETAIDLAKLYGADQQ---KAELAAIFHDYAKFRDKNEMRTLIREKLSQQDILFYGDELLHAPCGAYYVRE 94 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHH---HHHHHHHHTTTTTTSCHHHHHHHHHHHCSCCGGGGSCGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHH---HHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCHHHHHHHhhHHHHHHHHHHH
Confidence 5889999999999999999999863 46778877432211 111123345689999999998
Q ss_pred -CCC-CHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHH
Q 001359 803 -DGY-SQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLD 842 (1092)
Q Consensus 803 -~GE-~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSLADKlD 842 (1092)
-|- +++|+.||..|-- | .-+.+..+.++++||+++
T Consensus 95 ~~~~~~~~i~~aI~~Hh~----g-~~~~~~~~~Iv~vAD~i~ 131 (188)
T 2o08_A 95 EVGIEDEDVLQAIRFHTT----G-RPNMSLLEKIIFLADYIE 131 (188)
T ss_dssp HHCCCCHHHHHHHHTTTT----C-CTTCCHHHHHHHHHHHHS
T ss_pred ccCCChHHHHHHHHHhcc----C-CCCCCHHHHhhhhhccCC
Confidence 788 9999999999885 2 226688999999999953
No 8
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=95.78 E-value=0.027 Score=65.01 Aligned_cols=171 Identities=26% Similarity=0.274 Sum_probs=98.6
Q ss_pred chHHHHHHHHHHHHhhcCceeeecccc---------ccccc--cCCHHHHhhhcCCCcceEEeecCCCCC----CCC-CC
Q 001359 74 PTFQQAIQRLQEYWASVGCSVMQCSNT---------EVGAG--TMNPLTFLRVLGPEPWNVAYVEPSIRP----DDS-RY 137 (1092)
Q Consensus 74 ~~~q~~i~~l~~~w~~~gc~~~~p~~~---------e~gag--t~~p~t~~~~l~~~~~~~ayv~p~~rp----~d~-ry 137 (1092)
+|-++|-.+--+|..++|+.++.++.. -+.|| .|-| -|+..--|..=+++=+|+|.|= .|= -=
T Consensus 2 ~~~~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp-~flG~~~p~~~r~~~sQkCiR~gGKHnDlenV 80 (441)
T 3hy0_A 2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKD-VFLGLDKRNYSRATTSQRCVRAGGKHNDLENV 80 (441)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHH-HHHTSSCCSCSEEEEEEEEECEETTEECGGGB
T ss_pred CCHHHHHHHHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhhh-hhcCCCCCCCCCccccccceecCCCCCCHHhh
Confidence 467889999999999999999876542 13444 4556 5665554544589999999996 231 01
Q ss_pred CCCCccccceeeeEEEEcCCCcch-----HHHHHHHH---HhcCCCCCCCc-------------------------eeE-
Q 001359 138 GENPNRLQRHTQFQVILKPDPGNS-----QDLFIRSL---SALGIDVTEHD-------------------------IRF- 183 (1092)
Q Consensus 138 g~npnrl~~~~q~qvi~kp~p~~~-----q~lyl~sl---~~~gi~~~~hd-------------------------irf- 183 (1092)
|.. -.||+=|+.+=-=|-++- .+.=-+=| +-+||++..== +||
T Consensus 81 G~t---~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~~~lgl~~erL~vTvf~~D~Ea~~iW~~~~Gvp~~rI~~~g 157 (441)
T 3hy0_A 81 GYT---ARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIG 157 (441)
T ss_dssp TTB---SSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETTCHHHHHHHHHTTCCCGGGEEEEC
T ss_pred CCC---CccccceeeccccccchhhHHHHHHHHHHHhCCCCccCCCHHHeEEEEeCCCHHHHHHHHHccCCCHHHeeecC
Confidence 111 257777877654444331 00101112 23566554322 333
Q ss_pred -------ecCCCC-Ccccccccccceeeec-------------------Ceee-----eeeehhhhcCC--cccCcceee
Q 001359 184 -------VEDNWE-SPVLGAWGLGWEIWMD-------------------GMEI-----TQFTYFQQAGS--LQLSPVSVE 229 (1092)
Q Consensus 184 -------ved~we-~p~lgawglgwevw~~-------------------gmei-----tqftyfqq~gg--~~~~~~~~e 229 (1092)
.+|||= .=--|--|===|+-.| .+|| +||. +..+| .+|.--++-
T Consensus 158 ~~~~~~y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~--r~~~g~l~pLp~k~ID 235 (441)
T 3hy0_A 158 DNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFN--RQADGTMEPLPKPSVD 235 (441)
T ss_dssp STTSBTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEE--ECTTSCEEEEEEEEEE
T ss_pred ccccccccccCchhcCCCcCCcCCeeEEEecCcccCCCCCCCCCCCCCCeEEEeeeeeeeee--ecCCCccccCCCCcee
Confidence 334432 1111222333455555 2676 4443 23334 244445566
Q ss_pred ehhhhHHHHHHHhCCCcccee
Q 001359 230 ITYGLERILMLLQGVDHFKKI 250 (1092)
Q Consensus 230 itygleri~m~~q~~~~~~~~ 250 (1092)
--+||||||+.||||.|+||.
T Consensus 236 TGmGLERla~vlQg~~snYdt 256 (441)
T 3hy0_A 236 TAMGLERIAAVLQHVNSNYDI 256 (441)
T ss_dssp EEEEHHHHHHHHTTCSSGGGS
T ss_pred cCCCHHHHHHHHcCCCccccc
Confidence 669999999999999999987
No 9
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=95.73 E-value=0.041 Score=56.62 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccc-----------------cchhhcChhhhHHHHHHHHH
Q 001359 739 GTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLA-----------------TSVVMEFTSLAGVMACHYAL 801 (1092)
Q Consensus 739 GSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~LaKaDL~-----------------T~MV~EFPELQGiMG~yYA~ 801 (1092)
...++.+.|+..+|..||..+|++. +.+.-||.|--.--. |..-.++....+..|..+++
T Consensus 25 ~~~~~Hs~~Va~~A~~lA~~~g~d~---~~~~~AgLLHDIGK~~~~~~il~~~~~~~~~l~~~E~~~~~~H~~~G~~ll~ 101 (196)
T 2ogi_A 25 DKRFNHVLGVERAAIELAERYGYDK---EKAGLAALLHDYAKELSDDEFLRLIDKYQPDPDLKKWGNNIWHGLVGIYKIQ 101 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCH---HHHHHHHHHTTTTTTCCHHHHHHHHHHHCCCTGGGGSCHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCH---HHHHHHHHHHHcCCcCCHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHH
Confidence 3589999999999999999999986 346778776432111 11111234568999999999
Q ss_pred h-CCC-CHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHH
Q 001359 802 R-DGY-SQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLD 842 (1092)
Q Consensus 802 ~-~GE-~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSLADKlD 842 (1092)
. -|. +++|+.||..|-- | .-+.+..+.++++||+++
T Consensus 102 ~~~~~~~~~i~~aI~~Hh~----g-~~~~~~~~~Iv~vAD~i~ 139 (196)
T 2ogi_A 102 EDLAIKDQDILAAIAKHTV----G-SAQMSTLDKIVYVADYIE 139 (196)
T ss_dssp HHSCCCCHHHHHHHHTTTT----C-CSSCCHHHHHHHHHHHHC
T ss_pred HccCCCcHHHHHHHHHhcC----C-CCCCCHHHHhhhhheecC
Confidence 8 888 8999999999885 2 225678999999999953
No 10
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=95.52 E-value=0.053 Score=55.43 Aligned_cols=95 Identities=12% Similarity=0.101 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccc---cchh---------------hcChhhhHHHHHHHHH
Q 001359 740 TMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLA---TSVV---------------MEFTSLAGVMACHYAL 801 (1092)
Q Consensus 740 Sl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~LaKaDL~---T~MV---------------~EFPELQGiMG~yYA~ 801 (1092)
..++.+.|+..+|..||..+|++.+ .+.-||.|--.--. ..+. .++-...+.+|..+++
T Consensus 19 ~~~~Hs~~Va~~A~~lA~~~g~d~~---~~~~AgLLHDiGk~~~~~~il~~~~~~~~~l~~~E~~~~~~~H~~~Ga~il~ 95 (190)
T 3ccg_A 19 KRYKHSLGVMDTAVRLAGIYNEDTE---KARIAGLVHDCAKKLPGEKIIEICTNEGYELGDEDIRNSYLLHGLAGRILAK 95 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHH---HHHHHHHHTTTTTTSCHHHHHHHHHHTTCCCCHHHHTTTTC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCCHHHHhHHHcchHHHHHHHHH
Confidence 4788999999999999999999863 46778877432211 1110 1334468999999999
Q ss_pred h-CCC-CHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHH
Q 001359 802 R-DGY-SQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLD 842 (1092)
Q Consensus 802 ~-~GE-~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSLADKlD 842 (1092)
. -|. +++|+.||..|-- | .-+.+..+.++++||+++
T Consensus 96 ~~~~~~~~~i~~aI~~Hh~----g-~~~~~~~~~Iv~vAD~i~ 133 (190)
T 3ccg_A 96 KVIGIDDEDVLNAIEFHTT----G-RPNMSLLEKIIYIADYIE 133 (190)
T ss_dssp HTTCCCCHHHHHHHHTTTT----C-CSSCCHHHHHHHHHHHHS
T ss_pred HhcCCCcHHHHHHHHHhcC----C-CCCCCHHHHHHHHHHhCC
Confidence 8 788 8999999999986 2 126688999999999953
No 11
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=95.34 E-value=0.045 Score=58.08 Aligned_cols=101 Identities=20% Similarity=0.151 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccchhhcChhhhHHHHHHHHHhCCCCH----HHHHHH
Q 001359 738 LGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQ----QIAEAL 813 (1092)
Q Consensus 738 LGSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~LaKaDL~T~MV~EFPELQGiMG~yYA~~~GE~~----~VA~AI 813 (1092)
-|-=++.+.|+..+|..||...+.+. ..+.-||.|--. ...-...=++....|++......|.++ .|+.+|
T Consensus 23 ~~H~~~H~~rV~~~a~~ia~~~~~d~---~~l~~AalLHDi--g~~k~~~~~~~ga~~a~~~L~~~g~~~~~i~~V~~~I 97 (223)
T 3dto_A 23 SGHDWYHIRRVTLMAKAIGEQEKVDV---FVVQIAALFHDL--IDDKLVDDPETAKQQLIDWMEAAGVPSQKIDHTMDII 97 (223)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCH---HHHHHHHHHHST--TC-------CHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHhhc--cccccCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35678999999999999999877664 567788887533 322112225566678888888999998 488999
Q ss_pred HhhcCCCCCCCCCCCcchhhHHHHhhhHHHH
Q 001359 814 LEINLPRFSGDVLPKTDVGTVLAVADRLDTL 844 (1092)
Q Consensus 814 ~EhYlPr~agD~LP~t~~G~iLSLADKlDtL 844 (1092)
..|-.+..-++. |.|..+.+|.-|||||.|
T Consensus 98 ~~Hs~~~~~~~~-p~tlEa~IV~dADrLDal 127 (223)
T 3dto_A 98 NTISFKGGHGQS-LATREAMVVQDADRLDAL 127 (223)
T ss_dssp HCC-----------CCHHHHHHHHHHHGGGS
T ss_pred HHcCCccCCCCC-CCCHHHHHHHhHHHHHHH
Confidence 988544433333 999999999999999964
No 12
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=95.25 E-value=0.056 Score=56.34 Aligned_cols=103 Identities=18% Similarity=0.142 Sum_probs=74.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccchhhcChhhhHHHHHHHHH----hCCCCH---
Q 001359 735 HEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYAL----RDGYSQ--- 807 (1092)
Q Consensus 735 ~~kLGSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~LaKaDL~T~MV~EFPELQGiMG~yYA~----~~GE~~--- 807 (1092)
+..-|..++.+.|+..+|..||...+.+. ..+.-||.|--.+...+ ......++..|...|+ ..|.++
T Consensus 28 ~~~~~h~~~H~~rV~~~a~~la~~~~~d~---~~l~~AaLLHDIg~~~~--~~~~~~H~~~ga~~a~~~L~~~~~~~~~i 102 (220)
T 2pq7_A 28 YDDPAHDISHTFRVMENASEIASREKCDL---QKAIIAALLHDIKRPHE--ALTGVDHAESGAEYASGLLPTMGFDISFV 102 (220)
T ss_dssp CCCTTTSHHHHHHHHHHHHHHHHHHTCCH---HHHHHHHHHTTTTHHHH--HHHCCCHHHHHHHHHHHHGGGGTCCHHHH
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHcCCCccc--CCCcCCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 35678889999999999999999988654 56788999876653211 0111234577887766 568887
Q ss_pred -HHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHH
Q 001359 808 -QIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLV 845 (1092)
Q Consensus 808 -~VA~AI~EhYlPr~agD~LP~t~~G~iLSLADKlDtLv 845 (1092)
.|+.+|..|-.|.+ .-|.+..+.+|.+||+||.|.
T Consensus 103 ~~v~~~I~~H~~~~~---~~~~~~~a~Iv~dAD~Ldal~ 138 (220)
T 2pq7_A 103 AEVSKAIRSHRYSGG---LTPTSLTGKILQDADRLDAIG 138 (220)
T ss_dssp HHHHHHHHHCC--------CCCSHHHHHHHHHHHGGGSS
T ss_pred HHHHHHHHHcCcccC---CCCCCHHHHHHHHhhHHhhcc
Confidence 59999999986643 357789999999999999764
No 13
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=94.46 E-value=0.14 Score=53.13 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccchhhcChhhhHHHHHHHHHhCCCCHH----HHHH
Q 001359 737 KLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQ----IAEA 812 (1092)
Q Consensus 737 kLGSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~LaKaDL~T~MV~EFPELQGiMG~yYA~~~GE~~~----VA~A 812 (1092)
.-|.-++-+.|+..+|..||...+.+. ..+.-||.|--. ...--..=.++...+++......|.+++ |+.+
T Consensus 22 ~~~H~~~H~~rV~~~a~~ia~~~~~d~---~~v~~AAlLHDi--g~~~~~~~~~~~a~~a~~~L~~~g~~~~~~~~V~~~ 96 (209)
T 3b57_A 22 TTGHDWSHIKRVWKLSKEIQSKEGGDL---FTIELAALFHDY--SDIKLTTDEQEATKTLINWMETKEIPSELIKKIIRI 96 (209)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHCSCH---HHHHHHHHHTTC--CC-------CHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHhcc--CcccCCCchHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 345568999999999999999887764 567888887532 1111111123555788888888899984 8999
Q ss_pred HHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHH
Q 001359 813 LLEINLPRFSGDVLPKTDVGTVLAVADRLDTLV 845 (1092)
Q Consensus 813 I~EhYlPr~agD~LP~t~~G~iLSLADKlDtLv 845 (1092)
|..|=.+...++.-|.|..+.+|.-|||||.|-
T Consensus 97 I~~Hs~~~~~~~~~~~~~ea~iv~dAD~LDalg 129 (209)
T 3b57_A 97 IQSVSFKKGKNTFKALTIEEKIVQDADRLDAIG 129 (209)
T ss_dssp HHHHC---------CCCHHHHHHHHHHHHTTSH
T ss_pred HHHcCccccCCCCCCCCHHHHHHcCHHHHhHHH
Confidence 999954544445679999999999999999764
No 14
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=94.33 E-value=0.3 Score=53.26 Aligned_cols=160 Identities=15% Similarity=0.189 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhhcCceeeecccccccc-------ccCCH----------HHHhh---------h----c--CCCcceE
Q 001359 76 FQQAIQRLQEYWASVGCSVMQCSNTEVGA-------GTMNP----------LTFLR---------V----L--GPEPWNV 123 (1092)
Q Consensus 76 ~q~~i~~l~~~w~~~gc~~~~p~~~e~ga-------gt~~p----------~t~~~---------~----l--~~~~~~~ 123 (1092)
+|.++..+.++-...|+.-..+|..+--. -.-|| ..+|| + + +..|-++
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rl 158 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKI 158 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEE
Confidence 78999999999999999777666553210 01122 11222 1 2 5789999
Q ss_pred EeecCCCCCCCCCCCCCCccccceeeeEEEEc---CCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCcccccccccc
Q 001359 124 AYVEPSIRPDDSRYGENPNRLQRHTQFQVILK---PDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGW 200 (1092)
Q Consensus 124 ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~k---p~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgw 200 (1092)
.++.||.|+.+.+. -|...++|.=+.+= -+-.++..+.-.-|+.+|++ .+|.++.|.-|-- +-
T Consensus 159 feiG~vFR~E~~~~----~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~lGl~-----~~~~~~~~~hpgr-----~a 224 (290)
T 3qtc_A 159 FEIGPCYRKESDGK----EHLEEFTMLVFWQMGSGCTRENLESIITDFLNHLGID-----FKIVGDSCMVFGD-----TL 224 (290)
T ss_dssp EEEEEEECCCSCSS----SCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHHTCC-----CEEEC------CE-----EE
T ss_pred EEEcCEEecCCCCC----cCcchheEEEEEEEcCChHHHHHHHHHHHHHHHcCCC-----cEEeCCCccccCC-----cc
Confidence 99999999987643 34556666554441 12345566677778999984 6787777776643 44
Q ss_pred eeeecCeee--eeee--hhhhcCCcccCcceeeehhhhHHHHHHHhCCCccceee
Q 001359 201 EIWMDGMEI--TQFT--YFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQ 251 (1092)
Q Consensus 201 evw~~gmei--tqft--yfqq~gg~~~~~~~~eitygleri~m~~q~~~~~~~~~ 251 (1092)
+|+++|.|| -++- ..|.--|++-.....|| |||||+|...+++++-++-
T Consensus 225 ~i~~~~~~iG~G~lhP~vl~~~~~i~~~v~~~el--~le~l~~~~~~~~dir~~~ 277 (290)
T 3qtc_A 225 DVMHGDLELSSALVGPIPLDREWGIDKPWIGAGF--GLERLLKVKHDFKNIKRAA 277 (290)
T ss_dssp EEEETTEEEEEEEESCCGGGGGGTCCSCEEEEEE--EHHHHHHHHHTCSSGGGGS
T ss_pred cEeeCCEEEEEEEecHHHHHHhCCCCCceEEEEE--CHHHHHHHHcCCcHHHHHh
Confidence 566677666 2221 11133456555566665 7999999999999988764
No 15
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=94.33 E-value=0.098 Score=55.35 Aligned_cols=103 Identities=21% Similarity=0.143 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccchhhcChhhhHHHHHHHHHhCCCCHH----HHHH
Q 001359 737 KLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQ----IAEA 812 (1092)
Q Consensus 737 kLGSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~LaKaDL~T~MV~EFPELQGiMG~yYA~~~GE~~~----VA~A 812 (1092)
.-+--++-+.|+..+|..||...+.+. ..+.-||.|=-.-.. . ...-.+....+++.+....|.+++ |+.+
T Consensus 27 ~~~H~~~H~~rV~~~a~~ia~~~~~d~---~ll~lAAlLHDigk~-k-~~~~~~~ga~~a~~~L~~~g~~~~~~~~V~~~ 101 (231)
T 2pjq_A 27 HSGHGRDHLQRVNRLARRLAKDEGANL---NLTLAAAWLHDVIDD-K-LMANPAKAHQDLIVQLNAQNVTADDQTAIFAI 101 (231)
T ss_dssp CSSCSHHHHHHHHHHHHHHHHHHTCCH---HHHHHHHHHHHHHC-----------CHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHcCCcc-c-CCChHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 345568999999999999999887764 557777776432111 0 111233445788888888898875 8888
Q ss_pred HHhhcCCCCCCCCCCCcchhhHHHHhhhHHHH
Q 001359 813 LLEINLPRFSGDVLPKTDVGTVLAVADRLDTL 844 (1092)
Q Consensus 813 I~EhYlPr~agD~LP~t~~G~iLSLADKlDtL 844 (1092)
|..|=.+..-++.-|.|..+.+|..||+||.|
T Consensus 102 I~~Hs~~~~~~~~~~~~~ea~Iv~dAD~LDal 133 (231)
T 2pjq_A 102 IDHMSFSKSFNGPQKLSLEGQVVQDADRLDAI 133 (231)
T ss_dssp HTSCCTGGGGGCCCCCCSHHHHHHHHHHHTTS
T ss_pred HHHcCCccccCCCCCCCHHHHHHHHHHHHHhh
Confidence 88885555444467899999999999999986
No 16
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=94.13 E-value=0.21 Score=55.38 Aligned_cols=109 Identities=14% Similarity=0.178 Sum_probs=80.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHH-HHHHHHhhhhccc---cchh--------hcCh--hhhHHHHHH-HH
Q 001359 736 EKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQI-VQEAASLAMSDLA---TSVV--------MEFT--SLAGVMACH-YA 800 (1092)
Q Consensus 736 ~kLGSl~DK~~Ri~~La~~La~~l~~~~~~~~~-~~RAA~LaKaDL~---T~MV--------~EFP--ELQGiMG~y-YA 800 (1092)
.+=...+..+.|+..+|..||..+|++.++... +.-||.|.-.-.+ ..+. .||- ......|.. ..
T Consensus 162 ~~~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIGk~~ip~~il~k~~~L~~~E~~~~~~H~~~G~~~ll 241 (328)
T 3tm8_A 162 NTDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYGHHHSPLNLNQPLDSMSPEDLALWKKHPIEGAQKVQ 241 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGGGTTCSCCCSSCGGGSCHHHHHHHHHHHHHHHHHHT
T ss_pred hcCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCCcccCCHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344567999999999999999999999877777 7789988643322 1111 1222 236778888 67
Q ss_pred HhCCCCHHHHHHHHhhcCCCCCCCCCCC-------cchhhHHHHhhhHHHHHH
Q 001359 801 LRDGYSQQIAEALLEINLPRFSGDVLPK-------TDVGTVLAVADRLDTLVG 846 (1092)
Q Consensus 801 ~~~GE~~~VA~AI~EhYlPr~agD~LP~-------t~~G~iLSLADKlDtLvG 846 (1092)
...|.+++|+.+|..|.-. ..|.- |. +..+.+++|||.+|.|+.
T Consensus 242 ~~~~~~~~v~~~i~~HHEr-~dGsG-P~gl~g~~I~~~arIv~vaD~~dal~~ 292 (328)
T 3tm8_A 242 DKKHFDQTVINIIGQHEET-INGTG-PKGLREKDMDPLAVLVSSANAMDRLIT 292 (328)
T ss_dssp TCTTSCHHHHHHHHHTTCC-TBSCS-TTCCBGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHhcCC-CCCCC-CCCCCcccCCHHHHHHHHHHHHHHHhC
Confidence 7789999999999999753 22222 53 356899999999999987
No 17
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=94.03 E-value=0.43 Score=52.11 Aligned_cols=142 Identities=17% Similarity=0.114 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhcccc----------ch------------hhcCh---hhhH
Q 001359 739 GTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLAT----------SV------------VMEFT---SLAG 793 (1092)
Q Consensus 739 GSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~LaKaDL~T----------~M------------V~EFP---ELQG 793 (1092)
..++..+.|+..+|..||..+|.+. .+.+.-|+.|.-.-..- .+ -.|+- ...+
T Consensus 117 ~~~~~hs~~va~~a~~la~~~~~~~--~~~~~~agllHDIGkl~l~~~~p~~~~~il~~~~~~~~~l~~~E~~~~~~~H~ 194 (305)
T 3hc1_A 117 STLWAHSLGVARIAKLIAERTGFLN--PVNVYVAGLLHDVGEVFINFFRGKEFSQVVTLVDEEKITFGQAEERLFGTSHC 194 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHTTTHHHHHHHHHSHHHHHHHHHHHHHHCCCHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHCCCHH
Confidence 4578999999999999999999853 24455555543211100 00 01211 2468
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHHHhhhcCCCCCCCCChh-h---h--hHHH
Q 001359 794 VMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPF-G---L--RRIS 867 (1092)
Q Consensus 794 iMG~yYA~~~GE~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSLADKlDtLvG~F~iG~~PTGSkDPf-A---L--RRaA 867 (1092)
.+|...++.-|.++.++.+|..|.-|...+++ .+..+.++++||.+|.+.|.- +|...|+ . + .-.|
T Consensus 195 ~iG~~ll~~w~lp~~i~~~I~~HHe~~~~~~~--~~~~a~Iv~lAD~~~~~~~~g------~~~~~~~~~~~~~~~~~~a 266 (305)
T 3hc1_A 195 EVGFALAKRWSLNEFICDTILYHHDIEAVPYK--QAAIVAMVAFADEYCTLRRLG------FEGHKPVDSVRTLLENHPS 266 (305)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTTCGGGCSSS--CCHHHHHHHHHHHHHHHTTSC------CSCCCCCSCHHHHHHHCTH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCChhhcccc--ccHHHHHHHHHHHHHHHhCCC------CCccccCCcccccCCCHHH
Confidence 89999999999999999999999998765543 357899999999999998732 1222222 1 3 4555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHH
Q 001359 868 YGLVQILIEKDKNLDLELALRLAA 891 (1092)
Q Consensus 868 lGIIrILie~~l~l~L~~li~~a~ 891 (1092)
+.+++=-. ..++-++.+++....
T Consensus 267 ~~~l~~~~-g~~dp~l~~~~~~~~ 289 (305)
T 3hc1_A 267 WGVIRRSL-GGSDFDEKLIVAELD 289 (305)
T ss_dssp HHHHHHHS-TTCCCCHHHHHHHHH
T ss_pred HHHhCccc-ccCcHHHHHHHHHHH
Confidence 55555332 224556766665544
No 18
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=92.82 E-value=0.11 Score=54.96 Aligned_cols=101 Identities=22% Similarity=0.157 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccchhhcChhhhHHHHHHHHHhCCCCH----HHHHHH
Q 001359 738 LGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQ----QIAEAL 813 (1092)
Q Consensus 738 LGSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~LaKaDL~T~MV~EFPELQGiMG~yYA~~~GE~~----~VA~AI 813 (1092)
-|-=++-+.|+..+|..||...+.+. ..+.-||.|=-. ...-...=++....|.+......|.++ .|+.+|
T Consensus 23 ~~H~~~H~~rV~~~a~~ia~~~~~d~---~~l~~AAlLHDi--g~~k~~~h~~~ga~~a~~~L~~~g~~~~~i~~V~~~I 97 (223)
T 3djb_A 23 SGHDWYHIRRVHKMAISLSEQEGGNR---FIIEMAALLHDV--ADEKLNESEEAGMKKVSDWLEELHVEEEESKHVLHII 97 (223)
T ss_dssp CTTTHHHHHHHHHHHHHHHTTTCSCH---HHHHHHHTTHHH--HC--CCSSSTTTHHHHHHHHHHTCCCHHHHHHHHHHT
T ss_pred CcCcHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHhhc--cccccCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 46679999999999999998777654 556777766433 221111224455568888888899998 688888
Q ss_pred HhhcCCCCCCCCCCCcchhhHHHHhhhHHHH
Q 001359 814 LEINLPRFSGDVLPKTDVGTVLAVADRLDTL 844 (1092)
Q Consensus 814 ~EhYlPr~agD~LP~t~~G~iLSLADKlDtL 844 (1092)
..|=....-++. |.|..|.+|.-|||||.|
T Consensus 98 ~~Hs~~~~~~~~-p~tlea~iV~dADrLDal 127 (223)
T 3djb_A 98 ANMSYKGGHGGK-VESIEGKLVQDADRLDAL 127 (223)
T ss_dssp TCCC------------HHHHHHHHHHHTTTS
T ss_pred HHhCCccCCCCC-CCCHHHHHHHhHHHHHHH
Confidence 888332222223 999999999999999964
No 19
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=92.12 E-value=0.75 Score=49.89 Aligned_cols=134 Identities=14% Similarity=0.140 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhc----------------cc---------cchhhc-Chhhh
Q 001359 739 GTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSD----------------LA---------TSVVME-FTSLA 792 (1092)
Q Consensus 739 GSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~LaKaD----------------L~---------T~MV~E-FPELQ 792 (1092)
..++..+.++..++..+|..++ ..+.+.+--|+.|.-.- +. +..-.| |-...
T Consensus 123 ~~~~~hs~~va~~a~~la~~~~--~~~~e~a~~aGLLHDIGkl~l~~~~p~~~~~~~il~~~~~~~~l~~~E~~~~g~~H 200 (297)
T 1vqr_A 123 QNFLKTCNEEATFIANWLNDED--KKLSHLLVPCAMLLRLGIVIFSNFLIQNHKDKDFLAFLNKNENLALAENEFLGVDH 200 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHccHHHHHHHChhhhhHHHHHHHHHcCCCHHHHHHHHHCCCH
Confidence 3456677788888888887654 23334444455442111 00 000011 22447
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHHHhhhcCCCCCCCCChhhhhHHHHHHHH
Q 001359 793 GVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQ 872 (1092)
Q Consensus 793 GiMG~yYA~~~GE~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSLADKlDtLvG~F~iG~~PTGSkDPfALRRaAlGIIr 872 (1092)
+.+|...++.-|-+++++.+|..|.-|...++.. ...+.++.+||.++...+ +.+||.+ ..+..+++
T Consensus 201 ~~iGa~ll~~w~lp~~i~~aI~~Hh~~~~~~~~~--~~~a~iv~lAd~~~~~~~----------~~~~~~~-~~a~~~l~ 267 (297)
T 1vqr_A 201 ISFLGFLLHRWNFDDVLIESICFVRTPHAAREKV--KKSAYALAITDHLFAPHD----------GSSPFNA-KAAVALLK 267 (297)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTTTCGGGSCTTT--HHHHHHHHHHHHHHCTTT----------TTCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhcChhhccccc--cHHHHHHHHHHHHHHHhC----------CCCccch-HHHHHHHH
Confidence 8899999999999999999999999997665443 467899999999985533 4567764 34445444
Q ss_pred HHHhCCCCCCHHHHH
Q 001359 873 ILIEKDKNLDLELAL 887 (1092)
Q Consensus 873 ILie~~l~l~L~~li 887 (1092)
-+-..+..+|-..+.
T Consensus 268 ~~g~~~~~~d~~~l~ 282 (297)
T 1vqr_A 268 EAKTQGINFDLNNLL 282 (297)
T ss_dssp HHHHTTCCCCHHHHH
T ss_pred HhCccccCCCHHHHH
Confidence 433345556665443
No 20
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=92.00 E-value=0.66 Score=49.96 Aligned_cols=103 Identities=14% Similarity=0.117 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhcccc-----------------------chhhc-ChhhhHH
Q 001359 739 GTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLAT-----------------------SVVME-FTSLAGV 794 (1092)
Q Consensus 739 GSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~LaKaDL~T-----------------------~MV~E-FPELQGi 794 (1092)
..++..+.++..++..||..++.+. +.+--|+.|.-..-.- ..=.| |--..+.
T Consensus 104 ~~~~~hs~~~a~~a~~la~~~~~~~---~~~~~agLLhdiGkl~l~~~~p~~~~~i~~~~~~~~~~~~~E~~~lg~~H~~ 180 (275)
T 3m1t_A 104 ADFWGNTFEVAIICQELAKRLGTLP---EEAFTCGILHSIGELLIVNGDPAVAATISAAVADGADRNLMEKELLGYDNAE 180 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCH---HHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHHHTTCCHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCH---HHHHHHHHHHHccHHHHHHHCHHHHHHHHHHHhCCCCHHHHHHHHHCCCHHH
Confidence 4578899999999999999998875 3345555544332211 00011 1124678
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHHHh
Q 001359 795 MACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGL 847 (1092)
Q Consensus 795 MG~yYA~~~GE~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSLADKlDtLvG~ 847 (1092)
+|.+.+++-|-+++++.||..|.-|..++ +.+....+|.+||.++...+.
T Consensus 181 vGa~ll~~W~lp~~i~~aI~~Hh~~~~~~---~~~~l~~iv~lAd~i~~~~~~ 230 (275)
T 3m1t_A 181 IGALLAQSWKFTPHLVKGIQFQNHPKSAE---PYSKLAGMLAMAKQIAADWDK 230 (275)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTTTCGGGCS---SCCHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHCCCCHHHHHHHHHhCChhhcC---CccHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999996543 346788999999999887665
No 21
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=91.03 E-value=0.77 Score=48.23 Aligned_cols=102 Identities=14% Similarity=0.053 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHHHH-HHHhCCChhHHHHHHHHHHhhhhccccchhhcChhhhHHHHHHHHHhCCCCHH----HHHH
Q 001359 738 LGTMLDKTMRVQNMVRKL-SLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQ----IAEA 812 (1092)
Q Consensus 738 LGSl~DK~~Ri~~La~~L-a~~l~~~~~~~~~~~RAA~LaKaDL~T~MV~EFPELQGiMG~yYA~~~GE~~~----VA~A 812 (1092)
-+--++-+.|+..+|..| |...+.+. ..+.-||.|=-+--.. .. =++..-.+++......|.+++ |+.+
T Consensus 23 ~~H~~~H~~rV~~~a~~i~a~~~~~d~---~~l~lAAlLHDigk~~--~~-~~~~ga~~a~~~L~~~g~~~~~i~~V~~~ 96 (225)
T 2qgs_A 23 TGHDIAHVERVYNNACYIAKRENITDT---LVIELSSLLHDTVDSK--LT-DEILAYDQLKQFLSTLDLSSEISQQVLYI 96 (225)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTCSCC---HHHHHHHHHTTTTCCS--SS-CHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHhhccCCCH---HHHHHHHHHHcCCCCC--CC-cHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 344689999999999999 98777664 4577788774321110 01 023333566667777788874 8999
Q ss_pred HHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHH
Q 001359 813 LLEINLPRFSGDVLPKTDVGTVLAVADRLDTLV 845 (1092)
Q Consensus 813 I~EhYlPr~agD~LP~t~~G~iLSLADKlDtLv 845 (1092)
|..|=.+..-++.-|.|..+.+|..||+||.|-
T Consensus 97 I~~Hs~~~~~~~~~~~~~e~~Iv~dAD~LDalG 129 (225)
T 2qgs_A 97 IKHMSYRAGKNNHVKLSIDGEIVRDADRLDAIG 129 (225)
T ss_dssp HHTTC-------CCCCCHHHHHHHHHHHHTTSH
T ss_pred HHHcCcccCCCCCCCCCHHHHHHHhhHHHHHhh
Confidence 998865554444678999999999999999864
No 22
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=90.65 E-value=1 Score=48.44 Aligned_cols=101 Identities=8% Similarity=-0.023 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHh----CCChhHHHHHHHHHHhhhhccc-------------cch---hhcChhhhHHHHHH
Q 001359 739 GTMLDKTMRVQNMVRKLSLDL----GINEDMLQIVQEAASLAMSDLA-------------TSV---VMEFTSLAGVMACH 798 (1092)
Q Consensus 739 GSl~DK~~Ri~~La~~La~~l----~~~~~~~~~~~RAA~LaKaDL~-------------T~M---V~EFPELQGiMG~y 798 (1092)
..++..+.++..++..||..+ +.+..+.+.+--|+.|.-.+.. +.. -.++....+.+|.+
T Consensus 116 ~~~~~hs~~vA~~a~~la~~~~~~~~~~~~~~~~~~laGLLHdiGkl~l~~~~~~~~~~l~~~~~~~~~~~~~H~~iGa~ 195 (281)
T 3i7a_A 116 DEVWRTSIDVTAAACSLLQIYNKKHPGSGLNYDTLTLAGLVHNIGALPVLTEAEAHPEMFTTIEHLRSLVRKMQGPIGRA 195 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHTTTTHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHCCHHHHHHhHHhhHHHhcChHHHHHHHhCcHHHHHHH
Confidence 447888999999999999988 3333333556677777655532 110 12234468899999
Q ss_pred HHHhCCCCHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHH
Q 001359 799 YALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLD 842 (1092)
Q Consensus 799 YA~~~GE~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSLADKlD 842 (1092)
.+++-|-+++|+.+|..|--|...+ +.+....++.+||.+.
T Consensus 196 ll~~w~lp~~i~~ai~~Hh~~~~~~---~~~~~~~iV~lAd~~~ 236 (281)
T 3i7a_A 196 VLKSWDFAPEVMEVVERWADLPYLG---DHVSYLDFIRAAAFYT 236 (281)
T ss_dssp HHHHTTCCHHHHHHHHHTTCTTCCC---SSCCHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHcChhhcC---CcCCHHHHHHHHHHHc
Confidence 9999999999999999999987643 3457899999999953
No 23
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=89.11 E-value=0.79 Score=53.95 Aligned_cols=128 Identities=13% Similarity=0.145 Sum_probs=81.9
Q ss_pred HHHhhhc-CCCcceEEeecCCCCCCCC-CCCCCCccccceeeeE--EEEcCCCcc-----hHHHHHHHHHhcCCCCCCCc
Q 001359 110 LTFLRVL-GPEPWNVAYVEPSIRPDDS-RYGENPNRLQRHTQFQ--VILKPDPGN-----SQDLFIRSLSALGIDVTEHD 180 (1092)
Q Consensus 110 ~t~~~~l-~~~~~~~ayv~p~~rp~d~-ryg~npnrl~~~~q~q--vi~kp~p~~-----~q~lyl~sl~~~gi~~~~hd 180 (1092)
...+++- ..-|.++++++||.|=.=+ |.|- -|+.+|+|.= +.+.|.+.. +.++|.+-++.|||+...
T Consensus 198 ~~~~~sy~r~LP~rl~qig~~FR~E~~pr~GL--~R~REF~q~d~~~f~~~e~~~~~~~~~i~~~~~i~~~LGl~~~~-- 273 (505)
T 1ati_A 198 KNVLDATSRKLGFGIAQIGKAFRNEITPRNFI--FRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSREN-- 273 (505)
T ss_dssp HHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGG--GSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCGGG--
T ss_pred HHHHHhcCCCCCEEEEEeeceeeCCCCCCCCC--CcccceEEeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCeEE--
Confidence 3456666 7889999999999884422 2221 1666777632 578888776 778899999999997632
Q ss_pred eeEec---CCCCCccccccc------ccce----eeecCe-------------------------eeeeeehhhhcCCcc
Q 001359 181 IRFVE---DNWESPVLGAWG------LGWE----IWMDGM-------------------------EITQFTYFQQAGSLQ 222 (1092)
Q Consensus 181 irfve---d~we~p~lgawg------lgwe----vw~~gm-------------------------eitqftyfqq~gg~~ 222 (1092)
+++.. |+-....-..|= .||. +. ++. +-+.|+|+-..||-.
T Consensus 274 v~~~~~~~~~~~~~~~~~~d~E~~~p~~~~e~~g~~-~~~d~~L~~~~~~~~~~~~~~~~~~n~~~~~~~~y~d~~g~~~ 352 (505)
T 1ati_A 274 LVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIA-QRTDFDLGSHTKDQEALGITARVLRNEHSTQRLAYRDPETGKW 352 (505)
T ss_dssp EEEEECCTTTSCTTCSEEEEEEEEETTEEEEEEEEE-ECTTHHHHHHCSSTTTTTCCSCCCCCSCCCSCCCEECSSSCCE
T ss_pred EEECCCChHhhhcccHHHHhHHhhcCCCCccchhhh-cccceecchhhccccccceeeeecccccceeEEEEEcCCCCee
Confidence 66665 332101111121 1232 11 000 234578887777767
Q ss_pred cCcceeeehhhhHHHHHHHh
Q 001359 223 LSPVSVEITYGLERILMLLQ 242 (1092)
Q Consensus 223 ~~~~~~eitygleri~m~~q 242 (1092)
..|+.++..+|+|||...|.
T Consensus 353 y~p~vig~s~GieRli~all 372 (505)
T 1ati_A 353 FVPYVIEPSAGVDRGVLALL 372 (505)
T ss_dssp ECCEEEEEEEEHHHHHHHHH
T ss_pred ecceEEEEeeEHHHHHHHHH
Confidence 68888999999999987665
No 24
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=88.98 E-value=0.3 Score=52.29 Aligned_cols=121 Identities=20% Similarity=0.235 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccch---hhcChhhhHHHHHHHHHh--CCCCHH----H
Q 001359 739 GTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSV---VMEFTSLAGVMACHYALR--DGYSQQ----I 809 (1092)
Q Consensus 739 GSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~LaKaDL~T~M---V~EFPELQGiMG~yYA~~--~GE~~~----V 809 (1092)
|--++-+.|+..++..||...+.+. ..+.-||.|--.-..... -....++...+.+.+... .|-+++ |
T Consensus 24 ~H~~~H~~rV~~~a~~ia~~~~~d~---~~~~~AalLHDig~~~~~~~~~~~H~~~ga~~A~~~L~~~~~g~~~e~i~~V 100 (239)
T 3gw7_A 24 AHDVCHFRRVWATAQKLAADDDVDM---LVILTACYFHDIVSLAKNHPQRQRSSILAAEETRRLLREEFEQFPAEKIEAV 100 (239)
T ss_dssp ---CCHHHHHHHHHHHHTTTSCSCT---THHHHHHHHTTTTC--------CCSSHHHHHHHHHHHHHHTTSSCTTTTTST
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHhhcccccccCCccccHHHHHHHHHHHHHHhccCCcCHHHHHHH
Confidence 3446889999999999998877664 567888887533111000 011234444566666666 777764 8
Q ss_pred HHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHH-----HHHhhhcC----CCCCCCCChhhhhH
Q 001359 810 AEALLEINLPRFSGDVLPKTDVGTVLAVADRLDT-----LVGLFAAG----CQPSSTNDPFGLRR 865 (1092)
Q Consensus 810 A~AI~EhYlPr~agD~LP~t~~G~iLSLADKlDt-----LvG~F~iG----~~PTGSkDPfALRR 865 (1092)
+.+|..|= ++++.-|.|..+.+|.-|||||. +.=+|..| ..--...|||+..|
T Consensus 101 ~~~I~~Hs---~~~~~~p~t~Ea~IV~DADrLDalGAiGIaR~f~y~g~~~~~l~~p~~~~~~~r 162 (239)
T 3gw7_A 101 CHAIAAHS---FSAQIAPLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQHR 162 (239)
T ss_dssp TTGGGSSC---TTSCCCCCSHHHHHHHHHTGGGGSHHHHHHHHHHHHHHTTCCCSGGGGGGGTSC
T ss_pred HHHHHHcC---CCCCCCCCChHHHHHHhHHHHHHhhchhHHHHHHHHHHhCCccCCCcchhhhhh
Confidence 99999984 34446799999999999999996 44455433 22223456776544
No 25
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=85.07 E-value=2.6 Score=50.17 Aligned_cols=120 Identities=23% Similarity=0.422 Sum_probs=79.7
Q ss_pred CCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEEEcCCCcchHHH--HH-HHHHhcCCCCCCCceeEecCC----CC
Q 001359 117 GPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDL--FI-RSLSALGIDVTEHDIRFVEDN----WE 189 (1092)
Q Consensus 117 ~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~q~l--yl-~sl~~~gi~~~~hdirfved~----we 189 (1092)
|+.|.++.++-.+.|+++. +.+.+..+++|.=.++=-.+.++-++ .+ .-|+.||+ .++||+.++ |=
T Consensus 202 ~~~pvrLFEIG~VFr~d~~---~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~LGi----~~~r~~~~~~~~~~y 274 (534)
T 2du3_A 202 LPLPIKLFSIDRCFRREQG---EDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGF----ENFRFRKDEKRSKYY 274 (534)
T ss_dssp SCSSEEEEEEEEEECCCTT---CSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGGTC----CEEEEEECTTCCTTB
T ss_pred CCCCeeEEEEeeEEecCcc---ccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHcCC----CeEEEEECCCCcccc
Confidence 5789999999999997421 02335567778777765545555443 23 33456786 379998764 12
Q ss_pred Ccccccccccceeee-------------cC-eeeeeeehh----hhcCCcccCcceeeehhhhHHHHHHHhCCCcccee
Q 001359 190 SPVLGAWGLGWEIWM-------------DG-MEITQFTYF----QQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKI 250 (1092)
Q Consensus 190 ~p~lgawglgwevw~-------------~g-meitqftyf----qq~gg~~~~~~~~eitygleri~m~~q~~~~~~~~ 250 (1092)
.| |--|||.+ +| +||--|--+ .+--|++......|| |||||+|.+-+++++-++
T Consensus 275 hP-----gt~aeI~v~~~~~~g~~~~~~~gW~eIG~~G~vhP~VL~~~gi~~~v~afeL--gLErLaMl~~gi~DIR~~ 346 (534)
T 2du3_A 275 IP-----DTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDIPYPVMNLGL--GVERLAMILYGYDDVRKM 346 (534)
T ss_dssp CT-----TTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTTCCSCEEEEEE--EHHHHHHHHTTCSCHHHH
T ss_pred cC-----CeEEEEEEEeccccccccccCCCCEEEEEEEEECHHHHHHcCCCCcEEEEEe--cHHHHHHhhcCCchhhhh
Confidence 33 44488877 67 888766433 234566654566665 899999999999998765
No 26
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=83.78 E-value=0.68 Score=55.80 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=64.0
Q ss_pred CChHHHHHHHhhhhhhccCC-CCCCc--CCCCcccCCCHHHHHHHHHHHHHhhhcCCC---CCHHHHHHHHhhhchHHhh
Q 001359 956 QLFPKVVEAYSRPTRIVRGK-DVDTA--LEVDETAFETIEEKALWTVYLSAKNKIHPG---INVDDFIEISSELVQPLED 1029 (1092)
Q Consensus 956 ~~f~~l~~a~KRv~NIlkk~-~~~~~--~~vd~~ll~e~~E~~L~~a~~~~~~~~~~~---~~~~~~~~~l~~L~~~Id~ 1029 (1092)
....-|.-|+.|+..|++|. +.... ...+..++.+++|++|...+......+..+ ..-......|.+|....+.
T Consensus 484 ~t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~fn~ 563 (607)
T 1f7u_A 484 DTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSS 563 (607)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 34457788889999999864 11100 123446788999999998886654433221 2233445667899999999
Q ss_pred hhccccccCCCHHHHhh
Q 001359 1030 FFNHVFVMVKKESERTG 1046 (1092)
Q Consensus 1030 FFD~VmVm~eD~~IR~N 1046 (1092)
|+++.-|..+|+++++.
T Consensus 564 fY~~~~Vl~~~~~~~~a 580 (607)
T 1f7u_A 564 CYDVLWVAGQTEELATA 580 (607)
T ss_dssp HHHHCCSTTSCHHHHHH
T ss_pred HHHhCCCCCCCHHHHHH
Confidence 99999999999999887
No 27
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=83.68 E-value=2.6 Score=45.68 Aligned_cols=103 Identities=12% Similarity=0.072 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhcccc----------chh----------hc---ChhhhHHHH
Q 001359 740 TMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLAT----------SVV----------ME---FTSLAGVMA 796 (1092)
Q Consensus 740 Sl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~LaKaDL~T----------~MV----------~E---FPELQGiMG 796 (1092)
.++..+.++..++..||..++.+. .+.+--|+.|.-....- .+. .| |....+.+|
T Consensus 108 ~~~~hs~~~A~~a~~la~~~~~~~--~~~~~~agLLhdiGkl~l~~~~p~~~~~il~~~~~~~l~~~E~~~lg~~H~~vG 185 (288)
T 3ljx_A 108 AYWQKSLARAVALQSITAQASTVA--PKEAFTLGLLADVGRLALATAWPEEYSECLRKADGEALIALERERFATDHDELT 185 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSSC--HHHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHccCHHHHH
Confidence 478899999999999999988753 24455666655433221 110 01 112366799
Q ss_pred HHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHH
Q 001359 797 CHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLV 845 (1092)
Q Consensus 797 ~yYA~~~GE~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSLADKlDtLv 845 (1092)
...++.-|-+++++.||..|.-|....+ -..+....++.+||++....
T Consensus 186 a~ll~~W~lp~~i~~aI~~Hh~p~~~~~-~~~~~l~~iv~lAd~la~~~ 233 (288)
T 3ljx_A 186 RMLLTDWGFPQVFIDALQLSQQDEIRDE-GRTGRFARQLALAQHIADHR 233 (288)
T ss_dssp HHHHHHTTCCHHHHHHHHHTTSSCCCCC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHcCcccccc-cchhHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999975411 11245788999999998763
No 28
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=80.87 E-value=9.5 Score=44.14 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=74.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCC-hhHHHHHHHHHHhhhhccc-----------------------cchhhc---Ch
Q 001359 737 KLGTMLDKTMRVQNMVRKLSLDLGIN-EDMLQIVQEAASLAMSDLA-----------------------TSVVME---FT 789 (1092)
Q Consensus 737 kLGSl~DK~~Ri~~La~~La~~l~~~-~~~~~~~~RAA~LaKaDL~-----------------------T~MV~E---FP 789 (1092)
++..++..+.++..++..||..++.+ ..+.+.+--|+.|.-.-.. +..-.| |-
T Consensus 275 ~~~~~w~hs~~~A~~a~~LA~~~~~~~~~~~~~aflaGLLhDIGkl~l~~~~p~~~~~i~~~~~~~~~~~~~~~E~~~lg 354 (457)
T 3mem_A 275 GYVDYWQQAIWQAQSAGILASMMPRGQRPLFGLAYLAGLLHNFGHLVLAQVFPPHFKLVCRSLEVSPHIDSSVIEHYLLG 354 (457)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHSCGGGCCCHHHHHHHHHHTTTHHHHHHHHSHHHHHHHHHHHHHCTTSCHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHHHHHHHCHHHHHHHHHHHHhcCCCCHHHHHHHHHc
Confidence 45679999999999999999998753 1122334444444321110 000112 12
Q ss_pred hhhHHHHHHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHHHhhhcCC
Q 001359 790 SLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGC 852 (1092)
Q Consensus 790 ELQGiMG~yYA~~~GE~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSLADKlDtLvG~F~iG~ 852 (1092)
.-.+.+|.+.+++=|-+++++.+|..|.-|..++. .+....+|.+||.+ +..+++|.
T Consensus 355 ~~H~~vGa~Ll~~W~lP~~i~~aI~~HH~p~~~~~---~~~l~~iV~lAd~l---~~~~~~g~ 411 (457)
T 3mem_A 355 ITREQIAAQLMENWGMPDEVTLAIRYQKNPAYDGP---HNVYARLLWLGRQL---LTERGVAL 411 (457)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHHTTCTTCCST---THHHHHHHHHHHHH---HHHTTCSS
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHhcCccccCc---ccHHHHHHHHHHHH---HHHcCCCC
Confidence 23667899999999999999999999999977542 35678899999876 44445554
No 29
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=79.39 E-value=4.1 Score=48.26 Aligned_cols=120 Identities=18% Similarity=0.317 Sum_probs=75.8
Q ss_pred CCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEEEcCCCcchHHH--HHHH-HHhcCCCCCCCceeEecC--CCCCc
Q 001359 117 GPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDL--FIRS-LSALGIDVTEHDIRFVED--NWESP 191 (1092)
Q Consensus 117 ~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~q~l--yl~s-l~~~gi~~~~hdirfved--~we~p 191 (1092)
+..|-++..+-++.|+++. ...++-.+||.-.++--.+-++-+| .|++ ++.+|+ .++||... .|-.|
T Consensus 344 ~~~PiriFeiGrVFR~d~~----DatHlpeFhQlegl~~~~~v~f~dLKg~Le~~l~~lG~----~~~rfrps~fPfteP 415 (508)
T 3l4g_A 344 PFTPVKYFSIDRVFRNETL----DATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGI----TQLRFKPAYNPYTEP 415 (508)
T ss_dssp SCCCEEEEEEEEEECCSCC----CSSSCSEEEEEEEEEEEESCCHHHHHHHHHHHHHTTTC----CCCEEEECCCTTCSS
T ss_pred CCCCceEEEEccEEecCCC----CCCcCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHcCC----cceEeeccCCCCCCC
Confidence 4679999999999998753 2234555888887765455565554 3333 567785 46888865 46677
Q ss_pred ccccccccceeeecC----eeeeeeehhh----hcCCcc--cCcceeeehhhhHHHHHHHhCCCccceee
Q 001359 192 VLGAWGLGWEIWMDG----MEITQFTYFQ----QAGSLQ--LSPVSVEITYGLERILMLLQGVDHFKKIQ 251 (1092)
Q Consensus 192 ~lgawglgwevw~~g----meitqftyfq----q~gg~~--~~~~~~eitygleri~m~~q~~~~~~~~~ 251 (1092)
+..+ +|+++| +||--+--+- .-.|++ ..-...| -|||||+|..-|++++-++-
T Consensus 416 S~ev-----~i~~~G~~~W~EIGg~G~vhP~VL~~~Gipe~~~v~Afg--LgLeRLaml~~gi~diR~l~ 478 (508)
T 3l4g_A 416 SMEV-----FSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWG--LSLERPTMIKYGINNIRELV 478 (508)
T ss_dssp EEEE-----EECCSTTSSCEEEEEEECCCHHHHGGGTCCTTEEEEEEE--EESHHHHTTTTTCSCGGGTS
T ss_pred eEEE-----EEEECCccceEEEEeeeeEcHHHHHHCCCCCCceEEEEE--ecHHHHHHHHcCCcHHHHHh
Confidence 5554 334455 5655443222 234553 1222333 48999999999999987664
No 30
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=79.16 E-value=1.7 Score=45.24 Aligned_cols=102 Identities=13% Similarity=0.190 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHHHH----HHhC--CChhHHHHHHHHHHhhhhccccchhhcChhhh----HHHHHHHH-------
Q 001359 738 LGTMLDKTMRVQNMVRKLS----LDLG--INEDMLQIVQEAASLAMSDLATSVVMEFTSLA----GVMACHYA------- 800 (1092)
Q Consensus 738 LGSl~DK~~Ri~~La~~La----~~l~--~~~~~~~~~~RAA~LaKaDL~T~MV~EFPELQ----GiMG~yYA------- 800 (1092)
==|+.+.+-|+..+|-.+| +.++ +|. ..+.++|.|- |+.--.+++.|.-. +.++..|.
T Consensus 29 ~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~---~~~~~~aLlH--Di~E~~~GDi~~p~k~~~~~~~~~~~~~E~~~~ 103 (201)
T 2paq_A 29 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNA---ERIALLAMYH--DASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQ 103 (201)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCH---HHHHHHHHHT--TTTHHHHCCCCCC---------CTHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHhhhHHhcCcccCH---HHHHHHHHhc--ccccccCCCCCchHhhhchHHHHHhcccHHHHH
Confidence 3689999999999999999 6663 443 5678888774 77777777765322 22322232
Q ss_pred --HhCCCCHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHHHhhh
Q 001359 801 --LRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFA 849 (1092)
Q Consensus 801 --~~~GE~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSLADKlDtLvG~F~ 849 (1092)
...+-+++.+..+.+++.+ .+ +.|..+.++.-||||+.++=+.-
T Consensus 104 ~~i~~~Lp~~~~~e~~~l~~e----~e-~~t~ea~lvk~aD~l~a~lqa~e 149 (201)
T 2paq_A 104 QKLVDMVPEELRDIFAPLIDE----HA-YSDEEKSLVKQADALCAYLKCLE 149 (201)
T ss_dssp HHHHTTSCGGGHHHHHHHHTT----TS-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHhc----cc-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2334444444444566654 23 68999999999999999976653
No 31
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=78.92 E-value=1.5 Score=51.25 Aligned_cols=83 Identities=12% Similarity=0.105 Sum_probs=56.4
Q ss_pred HHhhhhhhccCCCCC--CcCCCCcccCCCHHHHHHHHHHHHHhhhcCCC---CCHHHHHHHHhhhchHHhhhhccccccC
Q 001359 964 AYSRPTRIVRGKDVD--TALEVDETAFETIEEKALWTVYLSAKNKIHPG---INVDDFIEISSELVQPLEDFFNHVFVMV 1038 (1092)
Q Consensus 964 a~KRv~NIlkk~~~~--~~~~vd~~ll~e~~E~~L~~a~~~~~~~~~~~---~~~~~~~~~l~~L~~~Id~FFD~VmVm~ 1038 (1092)
++.|+.+|+++.... .....+.+.|.++ |+.|...+....+.+..+ .+.......+.+|....+.|+++.-|..
T Consensus 343 a~aRi~silrk~~~~~~~~~~~~~~~L~~~-e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~vl~ 421 (464)
T 3fnr_A 343 AHARIHQVFAKAGKKIDDVMKADLQSLNQD-GVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVG 421 (464)
T ss_dssp HHHHHHHHHHHTTCCTTTSTTCCCTTCCHH-HHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHHHHHhhccCCCccccChhhCChH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 567778877754211 0112355667777 999988887665444332 2344556677888889999999999998
Q ss_pred CCHHHHhhh
Q 001359 1039 KKESERTGL 1047 (1092)
Q Consensus 1039 eD~~IR~N~ 1047 (1092)
+|+++++.|
T Consensus 422 ~~~~~~~aR 430 (464)
T 3fnr_A 422 SANENDLLK 430 (464)
T ss_dssp STTHHHHHH
T ss_pred CCHHHHHHH
Confidence 888888873
No 32
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=77.74 E-value=1 Score=53.97 Aligned_cols=87 Identities=20% Similarity=0.092 Sum_probs=61.7
Q ss_pred ChHHHHHHHhhhhhhccCCCCCCcCCCCcccCCCHHHHHHHHHHHHHhhhcCCC---CCHHHHHHHHhhhchHHhhhhcc
Q 001359 957 LFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPG---INVDDFIEISSELVQPLEDFFNH 1033 (1092)
Q Consensus 957 ~f~~l~~a~KRv~NIlkk~~~~~~~~vd~~ll~e~~E~~L~~a~~~~~~~~~~~---~~~~~~~~~l~~L~~~Id~FFD~ 1033 (1092)
...-+.-++.|+..|++|..... .. +. .+.++.|.+|...+....+.+..+ .+.......+.+|....+.|+++
T Consensus 469 ~~~ylqya~aR~~sil~k~~~~~-~~-~~-~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~yl~~La~~fn~fy~~ 545 (592)
T 1iq0_A 469 TGPYVQYAHARAHSILRKAGEWG-AP-DL-SQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNA 545 (592)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCCC-CC-CG-GGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHhhcccC-CC-cc-CCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 44566678899999998642111 11 22 356889999988776555443332 34556677788999999999999
Q ss_pred c-------cccCCCHHHHhh
Q 001359 1034 V-------FVMVKKESERTG 1046 (1092)
Q Consensus 1034 V-------mVm~eD~~IR~N 1046 (1092)
. -|..+|+.+++.
T Consensus 546 ~~~~~~~~~vl~~~~~~~~~ 565 (592)
T 1iq0_A 546 RENGQPATPVLTAPEGLREL 565 (592)
T ss_dssp EETTEESSCSTTSCTTHHHH
T ss_pred ccccccCCceeCCCHHHHHH
Confidence 9 999999888877
No 33
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=77.69 E-value=1.5 Score=52.93 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=61.1
Q ss_pred ChHHHHHHHhhhhhhccCCCCCC--------cCCCCcccCCCHHHHHHHHHHHHHhhhcCC---CCCHHHHHHHHhhhch
Q 001359 957 LFPKVVEAYSRPTRIVRGKDVDT--------ALEVDETAFETIEEKALWTVYLSAKNKIHP---GINVDDFIEISSELVQ 1025 (1092)
Q Consensus 957 ~f~~l~~a~KRv~NIlkk~~~~~--------~~~vd~~ll~e~~E~~L~~a~~~~~~~~~~---~~~~~~~~~~l~~L~~ 1025 (1092)
...-+.=++.|+..|++|..... ....+. .+.++.|.+|...+......+.. ...-......+.+|..
T Consensus 503 t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~-~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La~ 581 (629)
T 2zue_A 503 SAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADF-TKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELAS 581 (629)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCC-SSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhccccccccccccccccc-cCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34456668888888887531110 000111 35689999999888777554433 2334556677889999
Q ss_pred HHhhhhccccccCCCHHHHhh
Q 001359 1026 PLEDFFNHVFVMVKKESERTG 1046 (1092)
Q Consensus 1026 ~Id~FFD~VmVm~eD~~IR~N 1046 (1092)
..+.|+++.-|..+|+++++.
T Consensus 582 ~fn~fy~~~~vl~~~~~~~~~ 602 (629)
T 2zue_A 582 LFNKFYMDHPVLKAEEGVREA 602 (629)
T ss_dssp HHHHHHHHCCSTTSCTTHHHH
T ss_pred HHHHHHHhccccCCChHHHHH
Confidence 999999999999999888877
No 34
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=73.92 E-value=1.5 Score=48.10 Aligned_cols=56 Identities=20% Similarity=0.369 Sum_probs=40.4
Q ss_pred ccccceeeec-Ce-eee-----------eeehhhhcC---------------CcccCc-ceeeehhhhHHHHHHHhCCCc
Q 001359 196 WGLGWEIWMD-GM-EIT-----------QFTYFQQAG---------------SLQLSP-VSVEITYGLERILMLLQGVDH 246 (1092)
Q Consensus 196 wglgwevw~~-gm-eit-----------qftyfqq~g---------------g~~~~~-~~~eitygleri~m~~q~~~~ 246 (1092)
..-+||+.++ |+ ||. |-.-|...| |. | .++=+--|+|||+|++.|.+|
T Consensus 201 ~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~~l~~l~~G~---p~P~~G~glGieRL~mll~g~~~ 277 (294)
T 1nnh_A 201 FWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGK---LKPSAGAGIGVERLVRFIVGAKH 277 (294)
T ss_dssp EECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTC---CCCEEEEEEEHHHHHHHHHTCSS
T ss_pred eEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHHHHHHHhcCC---CCCceEEEEcHHHHHHHHhCCCC
Confidence 3467777777 77 773 323345555 42 3 667789999999999999999
Q ss_pred cceeeeCC
Q 001359 247 FKKIQYAD 254 (1092)
Q Consensus 247 ~~~~~~~~ 254 (1092)
|-|+.+=+
T Consensus 278 Irdvi~Fp 285 (294)
T 1nnh_A 278 IAEVQPFP 285 (294)
T ss_dssp GGGGCSSC
T ss_pred HHHEEecc
Confidence 99986543
No 35
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=70.97 E-value=9.3 Score=43.37 Aligned_cols=138 Identities=18% Similarity=0.206 Sum_probs=83.7
Q ss_pred hcccchhhHHhhhcCChHHHHhcccCcccccCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccch-
Q 001359 706 RYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSV- 784 (1092)
Q Consensus 706 RL~DA~FFy~eDlK~~Le~~v~kLk~VvF~~kLGSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~LaKaDL~T~M- 784 (1092)
|+-|-..|=.--..+-+ .+...+|+..-.|-++.+.++..+|..||..+|++.+ +.+..||.|- |+.-..
T Consensus 21 ~ii~s~~fqRLr~i~Ql-----G~~~~v~p~a~~~r~~Hsl~V~~~a~~ia~~~~~~~~--~~~~~AaLLH--DiG~~pf 91 (371)
T 2hek_A 21 RLIDSFPFQRLRYVKQL-----GLAYLVFPSAQHTRFEHSLGVYHITERICESLKVKEK--ELVKLAGLLH--DLGHPPF 91 (371)
T ss_dssp HHHTSHHHHGGGGSBTT-----TTGGGTSTTCCCBHHHHHHHHHHHHHHHHHHHTCTTH--HHHHHHHHTT--TTTCCSS
T ss_pred HHhCCHHHhCccccCcc-----CccceeeCCCCCChhHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHH--hcCcccc
Confidence 45555555443333333 2334588776789999999999999999999998863 4577787774 332211
Q ss_pred --hhc----ChhhhHHHHHHHHHh-------CC-CCH-H---HHHHHHhhcCCCCCCCCCCCcchhhHHH---HhhhHHH
Q 001359 785 --VME----FTSLAGVMACHYALR-------DG-YSQ-Q---IAEALLEINLPRFSGDVLPKTDVGTVLA---VADRLDT 843 (1092)
Q Consensus 785 --V~E----FPELQGiMG~yYA~~-------~G-E~~-~---VA~AI~EhYlPr~agD~LP~t~~G~iLS---LADKlDt 843 (1092)
+.| ...-+..+|...|+. .. .++ + |+.+|..+.. .-|.+..+.+++ =|||||.
T Consensus 92 sh~~e~~~~~g~~He~~g~~i~~~~~i~~iL~~~~~~~~i~~I~~~I~~~~~------~~~~~~l~~IVs~~lDaDRlDY 165 (371)
T 2hek_A 92 SHTTEVLLPRERSHEDFTERVIKETEIYEILKQDYSHEDIERLVRITLGKPE------DEEEKLLSEIITGEFGSDRMDY 165 (371)
T ss_dssp SSCHHHHSTTSSSCCCHHHHHHHHSHHHHHHHTTSCHHHHHHHHHHHHTCCS------SHHHHHHHHHHHSTTCHHHHHH
T ss_pred ccchHHHhccCCCHHHHHHHHHhcchHHHHHHHhCCHHHHHHHHHHHhcCCC------CcccchHHHHhcCCCCccccch
Confidence 111 112233445554442 11 222 3 7777776532 235677899999 8999998
Q ss_pred HH-HhhhcCCCCCCCCC
Q 001359 844 LV-GLFAAGCQPSSTND 859 (1092)
Q Consensus 844 Lv-G~F~iG~~PTGSkD 859 (1092)
|. -+|..| .+-|.-|
T Consensus 166 l~RDs~~~g-~~~g~~d 181 (371)
T 2hek_A 166 LRRDAYFCG-VSYGFFD 181 (371)
T ss_dssp HHHHHHHHT-CCSSCCC
T ss_pred hccchhhhc-CCcCCcC
Confidence 86 455556 3445433
No 36
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=56.94 E-value=6.2 Score=45.55 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=46.3
Q ss_pred cccccceeeecCeeee-----------eeehhhhcCCcc------------cCcceeeehhhhHHHHHHHhCCCccceee
Q 001359 195 AWGLGWEIWMDGMEIT-----------QFTYFQQAGSLQ------------LSPVSVEITYGLERILMLLQGVDHFKKIQ 251 (1092)
Q Consensus 195 awglgwevw~~gmeit-----------qftyfqq~gg~~------------~~~~~~eitygleri~m~~q~~~~~~~~~ 251 (1092)
...--||+-++|+||. |-.-|...|.-+ =-|+++=+--|+|||.|++-|.+||-|..
T Consensus 332 ~~~~~fDL~~~G~Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~~~Irdvi 411 (422)
T 1n9w_A 332 GTTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYAR 411 (422)
T ss_dssp SBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGC
T ss_pred CEEEEEEEEECCEEEEeCEeecCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCCCcHHhEE
Confidence 3567799999999985 666676665211 14778889999999999999999999986
Q ss_pred eC
Q 001359 252 YA 253 (1092)
Q Consensus 252 ~~ 253 (1092)
.=
T Consensus 412 ~F 413 (422)
T 1n9w_A 412 AF 413 (422)
T ss_dssp SC
T ss_pred ec
Confidence 53
No 37
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=54.36 E-value=18 Score=42.20 Aligned_cols=80 Identities=23% Similarity=0.343 Sum_probs=53.9
Q ss_pred CCCcceEEeecCCCCCCCCCCCCCCc---cccceeeeE--EEEcCCCc-----chHHHHHHHHHhcCCCCCCCceeEecC
Q 001359 117 GPEPWNVAYVEPSIRPDDSRYGENPN---RLQRHTQFQ--VILKPDPG-----NSQDLFIRSLSALGIDVTEHDIRFVED 186 (1092)
Q Consensus 117 ~~~~~~~ayv~p~~rp~d~ryg~npn---rl~~~~q~q--vi~kp~p~-----~~q~lyl~sl~~~gi~~~~hdirfved 186 (1092)
..-|.+++++.||.|-.=|-+|...+ |+.+|+|-- ++++|.-. .+.++|.+=|+.|||+ .|.++=
T Consensus 269 ~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL~-----yrv~~~ 343 (455)
T 2dq0_A 269 KDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIP-----YRVVNI 343 (455)
T ss_dssp TTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTCC-----EEEEEC
T ss_pred hhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCCc-----eEEEEC
Confidence 34599999999999988888886655 555554422 46677432 3467888889999984 566652
Q ss_pred CCCCccccccccc------ceeeecC
Q 001359 187 NWESPVLGAWGLG------WEIWMDG 206 (1092)
Q Consensus 187 ~we~p~lgawglg------wevw~~g 206 (1092)
. + |.-|-| -|+|+.|
T Consensus 344 ~--~---gdlg~~a~~~~diE~w~p~ 364 (455)
T 2dq0_A 344 C--T---GDLGYVAAKKYDIEAWMPG 364 (455)
T ss_dssp C--G---GGSCSSCSEEEEEEEEETT
T ss_pred C--C---ccccChhhceeeeeeecCc
Confidence 1 1 223333 6899987
No 38
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=52.35 E-value=9.6 Score=46.12 Aligned_cols=84 Identities=18% Similarity=0.265 Sum_probs=60.4
Q ss_pred cccccccceeeecCeeee-----------eeehhhhcCCccc-------------CcceeeehhhhHHHHHHHhCCCccc
Q 001359 193 LGAWGLGWEIWMDGMEIT-----------QFTYFQQAGSLQL-------------SPVSVEITYGLERILMLLQGVDHFK 248 (1092)
Q Consensus 193 lgawglgwevw~~gmeit-----------qftyfqq~gg~~~-------------~~~~~eitygleri~m~~q~~~~~~ 248 (1092)
+.+.+--|++.|||.||. |-.-|....|++- -|+.+=|..|+|||.|.+-|.+||-
T Consensus 481 ~~~~a~~ydlv~~g~El~~gs~ri~~~~~q~~~f~~~~~~~~~~~~~~l~a~~~G~pphgG~a~G~dRlvml~~g~~~ir 560 (617)
T 4ah6_A 481 KKARSQHYDLVLNGNEIGGGSIRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIR 560 (617)
T ss_dssp TSSBCCCEEEEETTEEEEEEECCCCSHHHHHHHHHHHCSSTHHHHHHHHHHHTBTCCCEEEEEEEHHHHHHHHHTCSSGG
T ss_pred hhhhhceEEEEECCEEEeeeeEEcCCHHHHHHHHHHhhccchhhHHHHHHHHHcCCCCCCceeecHHHHHHHHcCCCchh
Confidence 467788999999999975 6677885556652 4788889999999999999999999
Q ss_pred eeeeCCC-Cceeccccc-----chhhhhcccccc
Q 001359 249 KIQYADG-ITYGELFLE-----NEKEMSAYYLEH 276 (1092)
Q Consensus 249 ~~~~~~~-~~yg~~~~~-----~e~e~s~y~~~~ 276 (1092)
|+.|=+. -+=-|+... .+.+-..|+...
T Consensus 561 dvi~fP~~~~~~d~~~~aP~~v~~~qL~el~i~~ 594 (617)
T 4ah6_A 561 DVIAFPKSFRGHDLMSNTPDSVPPEELKPYHIRV 594 (617)
T ss_dssp GSSSSCCCSSSCCSSSCCSBCCCGGGTTTTC---
T ss_pred eEEecCCCCCccccccCCCCCCCHHHHHhcCeee
Confidence 9988662 222244433 355556666544
No 39
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=50.14 E-value=53 Score=37.46 Aligned_cols=102 Identities=18% Similarity=0.175 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccc---------hhhcChhhhHH----HHHHHHHh---
Q 001359 739 GTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATS---------VVMEFTSLAGV----MACHYALR--- 802 (1092)
Q Consensus 739 GSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~LaKaDL~T~---------MV~EFPELQGi----MG~yYA~~--- 802 (1092)
=|-+..+.=+..+|..||..+|++. +.+++||.| -|+--. +-..+.+-.|. +|.-.+..
T Consensus 74 ~tRl~HSl~Va~iar~ia~~l~l~~---~l~~~a~Ll--HDiGh~PFgH~~E~~l~~~~~~~ggf~Hn~~s~ril~~le~ 148 (376)
T 2dqb_A 74 RTRLTHTLEVAQVSRSIARALGLNE---DLTEAIALS--HDLGHPPFGHTGEHVLNALMQDHGGFEHNAQALRILTHLEV 148 (376)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCCH---HHHHHHHHH--TTTTCCSSTTHHHHHHHHHTTTTTCCCHHHHHHHHHHTTCB
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHH--HhcCCCccccchHHHHHHHhhccCCCcHHHHHHHHHHHHhh
Confidence 4778999999999999999999985 456777766 466543 11111111122 22222222
Q ss_pred -------CCCCHHHHHHHHhhcCCCCC--CC--CCCCcchhhHHHHhhhHHHHH
Q 001359 803 -------DGYSQQIAEALLEINLPRFS--GD--VLPKTDVGTVLAVADRLDTLV 845 (1092)
Q Consensus 803 -------~GE~~~VA~AI~EhYlPr~a--gD--~LP~t~~G~iLSLADKlDtLv 845 (1092)
-+.+.++-.+|..|-.|... ++ ..|.+..+.++++||+||.++
T Consensus 149 ~~~~~~glnLt~~~l~~I~kh~~~~~~~~~~~~~~~~~le~~Iv~~AD~IaY~~ 202 (376)
T 2dqb_A 149 RYPGFRGLNLTYEVLEGIATHEAAYSPGFKPLYEGQGTLEAQVVDLSDAIAYAA 202 (376)
T ss_dssp CBTTBSBCCCCHHHHHHHHHSCC-----------CCSCHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHhCCCccchhhhhhcccCCChhhhHHHHHHHHHhcc
Confidence 13358999999998777521 01 147778899999999999886
No 40
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=47.01 E-value=12 Score=44.01 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=45.9
Q ss_pred ccccceeeecCeeee-----------eeehhhhcCCccc--------------CcceeeehhhhHHHHHHHhCCCcccee
Q 001359 196 WGLGWEIWMDGMEIT-----------QFTYFQQAGSLQL--------------SPVSVEITYGLERILMLLQGVDHFKKI 250 (1092)
Q Consensus 196 wglgwevw~~gmeit-----------qftyfqq~gg~~~--------------~~~~~eitygleri~m~~q~~~~~~~~ 250 (1092)
..--||+-++|+||. |-.-|...|--+- -|+++=+--|+|||.|+|-|.+||.|.
T Consensus 396 ~~~~fDL~~~G~Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PPhgG~glGiDRLvmll~g~~~IRdV 475 (487)
T 1eov_A 396 YSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRA 475 (487)
T ss_dssp BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHHHHTTCSSGGGG
T ss_pred eEEEEEEEeCCEEEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCCCeEEEEhHHHHHHHHcCCCcHHhe
Confidence 567799999999985 5666666552221 477888999999999999999999998
Q ss_pred eeC
Q 001359 251 QYA 253 (1092)
Q Consensus 251 ~~~ 253 (1092)
.+=
T Consensus 476 i~F 478 (487)
T 1eov_A 476 SLF 478 (487)
T ss_dssp CSS
T ss_pred eec
Confidence 654
No 41
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Probab=46.19 E-value=9.1 Score=39.83 Aligned_cols=47 Identities=28% Similarity=0.591 Sum_probs=40.1
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCcccccccccc--eeeecC
Q 001359 154 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGW--EIWMDG 206 (1092)
Q Consensus 154 ~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgw--evw~~g 206 (1092)
-||.| +.|+.-++.+|+++ .++-||+|+..+=..||...|| =||+++
T Consensus 175 ~KP~p----~~~~~~~~~~~~~~--~~~~~vGDs~~~Di~~A~~aG~~~~i~v~~ 223 (260)
T 2gfh_A 175 EKPAP----SIFYHCCDLLGVQP--GDCVMVGDTLETDIQGGLNAGLKATVWINK 223 (260)
T ss_dssp CTTCH----HHHHHHHHHHTCCG--GGEEEEESCTTTHHHHHHHTTCSEEEEECT
T ss_pred CCCCH----HHHHHHHHHcCCCh--hhEEEECCCchhhHHHHHHCCCceEEEEcC
Confidence 38877 67889999999986 5799999999999999999999 488764
No 42
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=45.77 E-value=11 Score=43.57 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=44.1
Q ss_pred ccccceeeecCeeee-----------eeehhhhcCCc-----------c-cCcceeeehhhhHHHHHHHhCCCccceeee
Q 001359 196 WGLGWEIWMDGMEIT-----------QFTYFQQAGSL-----------Q-LSPVSVEITYGLERILMLLQGVDHFKKIQY 252 (1092)
Q Consensus 196 wglgwevw~~gmeit-----------qftyfqq~gg~-----------~-~~~~~~eitygleri~m~~q~~~~~~~~~~ 252 (1092)
..-.||+-++|+||. |-.-|..-|.- + =-|+++=+--|+|||.|+|-|.+||-|..+
T Consensus 340 ~~~~fDl~~~G~Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~ 419 (429)
T 1wyd_A 340 LSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVP 419 (429)
T ss_dssp BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCCCCGGGTSS
T ss_pred eEEEEEEEECCEEEEeCeeeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEe
Confidence 677899999999985 33345444310 1 136788899999999999999999999765
Q ss_pred CC
Q 001359 253 AD 254 (1092)
Q Consensus 253 ~~ 254 (1092)
=+
T Consensus 420 FP 421 (429)
T 1wyd_A 420 FP 421 (429)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 43
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=44.07 E-value=10 Score=37.54 Aligned_cols=44 Identities=36% Similarity=0.623 Sum_probs=37.7
Q ss_pred cCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCccccccccccee-ee
Q 001359 155 KPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI-WM 204 (1092)
Q Consensus 155 kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgwev-w~ 204 (1092)
||+| +.|..-++.+|+++ .++-||+|.|.+=..+|.-.||-+ |+
T Consensus 97 KP~p----~~~~~~~~~~~~~~--~~~l~VGD~~~~Di~~A~~aG~~~i~v 141 (189)
T 3ib6_A 97 KPDK----TIFDFTLNALQIDK--TEAVMVGNTFESDIIGANRAGIHAIWL 141 (189)
T ss_dssp TTSH----HHHHHHHHHHTCCG--GGEEEEESBTTTTHHHHHHTTCEEEEE
T ss_pred CcCH----HHHHHHHHHcCCCc--ccEEEECCCcHHHHHHHHHCCCeEEEE
Confidence 7876 67888999999865 679999999999999999999974 44
No 44
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=39.90 E-value=4.4e+02 Score=29.40 Aligned_cols=164 Identities=16% Similarity=0.263 Sum_probs=89.7
Q ss_pred chHHHHHHHHHHHHhhcCceeeecccccccc--------ccCCHHH---------------------Hhhhc--CCCcce
Q 001359 74 PTFQQAIQRLQEYWASVGCSVMQCSNTEVGA--------GTMNPLT---------------------FLRVL--GPEPWN 122 (1092)
Q Consensus 74 ~~~q~~i~~l~~~w~~~gc~~~~p~~~e~ga--------gt~~p~t---------------------~~~~l--~~~~~~ 122 (1092)
...|.++..+.++....|......|.++.-. .-=||+- .+|++ +..|.+
T Consensus 107 hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e~~vLRThtsp~~lr~l~~~~~pir 186 (327)
T 3pco_A 107 HPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQIRTMKAQQPPIR 186 (327)
T ss_dssp CHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSSSSCEECSCTHHHHHHHHTTCCSSCC
T ss_pred CHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeCCCceecccCCHHHHHHHHhCCCCee
Confidence 4489999999999999999988777654322 1125642 12333 456666
Q ss_pred EEeecCCCCCCCCCCCCCCccccceeeeEEEEcCCCcchHHH--HHHH-HHhc-CCCCCCCceeEecC--CCCCcccccc
Q 001359 123 VAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDL--FIRS-LSAL-GIDVTEHDIRFVED--NWESPVLGAW 196 (1092)
Q Consensus 123 ~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~q~l--yl~s-l~~~-gi~~~~hdirfved--~we~p~lgaw 196 (1092)
+.-+=-+.|+++. ...+-.+||.-.+.--.+-++-+| .|++ ++.+ |- .-++||... .|-.|+..|
T Consensus 187 ifeiGrVyR~d~d-----~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lfg~---~~~vr~rps~fPftePs~ea- 257 (327)
T 3pco_A 187 IIAPGRVYRNDYD-----QTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFEE---DLQIRFRPSYFPFTEPSAEV- 257 (327)
T ss_dssp BCCEECCBCSCCB-----TTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHHCS---CSEEEEEEECCTTEEEEEEE-
T ss_pred EEeeccEEecCCC-----cccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHhCC---CceEEEecCcCCCCCCcEEE-
Confidence 6666667788522 223333667654443334444443 2222 3333 52 235888754 344555443
Q ss_pred cccceeee-cC--eeeeeeehh----hhcCCcccCccee-eehhhhHHHHHHHhCCCcccee
Q 001359 197 GLGWEIWM-DG--MEITQFTYF----QQAGSLQLSPVSV-EITYGLERILMLLQGVDHFKKI 250 (1092)
Q Consensus 197 glgwevw~-~g--meitqftyf----qq~gg~~~~~~~~-eitygleri~m~~q~~~~~~~~ 250 (1092)
+||| +| +||-=+--. ....|++-.-.++ =.--|||||+|..=|++++-++
T Consensus 258 ----dI~~~~G~w~EIgg~G~VHP~Vl~~~gid~~~~~g~AFglgleRlaml~~~i~diR~~ 315 (327)
T 3pco_A 258 ----DVMGKNGKWLEVLGCGMVHPNVLRNVGIDPEVYSGFAFGMGMERLTMLRYGVTDLRSF 315 (327)
T ss_dssp ----EEECSSSCEEEEEEEEEECHHHHHTTTCCTTTCEEEEEEEEHHHHHHHHHTCSCGGGG
T ss_pred ----EEEEeCCCeEEEEEEEEECHHHHHHcCCCCccceEEEEEechHHHHHHHcCCcHHHHH
Confidence 2344 44 344322111 2234555431121 1224899999999999987654
No 45
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=38.62 E-value=46 Score=38.29 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=45.0
Q ss_pred CCCcceEEeecCCCCCCCCCCCCCC---ccccceeeeE--EEEcCCC-----cchHHHHHHHHHhcCCC
Q 001359 117 GPEPWNVAYVEPSIRPDDSRYGENP---NRLQRHTQFQ--VILKPDP-----GNSQDLFIRSLSALGID 175 (1092)
Q Consensus 117 ~~~~~~~ayv~p~~rp~d~ryg~np---nrl~~~~q~q--vi~kp~p-----~~~q~lyl~sl~~~gi~ 175 (1092)
..-|.+.+|+.||.|-..|-||... -|+.+|+|.- ++++|.. ..+.++|.+-|+.|||+
T Consensus 248 ~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~ 316 (425)
T 2dq3_A 248 ENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLP 316 (425)
T ss_dssp TTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 3459999999999999988888553 4777777654 3567754 34667899999999984
No 46
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14
Probab=38.14 E-value=13 Score=38.27 Aligned_cols=47 Identities=23% Similarity=0.453 Sum_probs=39.1
Q ss_pred EEcCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCcccccccccce-eeec
Q 001359 153 ILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWE-IWMD 205 (1092)
Q Consensus 153 i~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgwe-vw~~ 205 (1092)
.-||+| +.|..-++.+|+++ .++-||.|++++=..||-..||- ||+.
T Consensus 181 ~~KP~p----~~~~~~~~~~~~~~--~~~~~vGD~~~~Di~~a~~aG~~~i~v~ 228 (264)
T 1yv9_A 181 IGKPKA----IIMERAIAHLGVEK--EQVIMVGDNYETDIQSGIQNGIDSLLVT 228 (264)
T ss_dssp CSTTSH----HHHHHHHHHHCSCG--GGEEEEESCTTTHHHHHHHHTCEEEEET
T ss_pred cCCCCH----HHHHHHHHHcCCCH--HHEEEECCCcHHHHHHHHHcCCcEEEEC
Confidence 358887 56777899999876 57999999999999999999998 5554
No 47
>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22
Probab=37.23 E-value=9.4 Score=40.40 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=37.4
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCccccccccccee-eec
Q 001359 154 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI-WMD 205 (1092)
Q Consensus 154 ~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgwev-w~~ 205 (1092)
.||+| +.|+.-++.+|+++. ++-||+|... =..||-..|+-+ |++
T Consensus 186 ~KP~p----~~~~~a~~~lg~~p~--~~l~vgDs~~-di~aA~~aG~~~i~v~ 231 (253)
T 2g80_A 186 KKTET----QSYANILRDIGAKAS--EVLFLSDNPL-ELDAAAGVGIATGLAS 231 (253)
T ss_dssp CTTCH----HHHHHHHHHHTCCGG--GEEEEESCHH-HHHHHHTTTCEEEEEC
T ss_pred CCCCH----HHHHHHHHHcCCCcc--cEEEEcCCHH-HHHHHHHcCCEEEEEc
Confidence 48876 789999999999874 6999999985 488999999985 553
No 48
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=37.17 E-value=59 Score=37.42 Aligned_cols=116 Identities=20% Similarity=0.212 Sum_probs=66.6
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHhC-----CChhHHHHHHHHHHhhhhccccch---hhcCh----hhhHHHHHHH
Q 001359 732 ILFHEKLGTMLDKTMRVQNMVRKLSLDLG-----INEDMLQIVQEAASLAMSDLATSV---VMEFT----SLAGVMACHY 799 (1092)
Q Consensus 732 VvF~~kLGSl~DK~~Ri~~La~~La~~l~-----~~~~~~~~~~RAA~LaKaDL~T~M---V~EFP----ELQGiMG~yY 799 (1092)
.||+..--|-++.+..+..+|..++..++ ++..+...+..||.|- |+.-.- ++|.- --.-.+|...
T Consensus 47 ~v~p~a~htRf~HSLgV~~la~~l~~~l~~~~~~~~~~d~~~~~~AaLlH--DiGh~PfsH~~E~~~~~~~~He~~s~~i 124 (410)
T 2q14_A 47 VVYPGAQHTRFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLH--DIGHGPFSHVLEDTIVQGVSHEEISLML 124 (410)
T ss_dssp TTCTTCCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT--TTTCCTTHHHHHTTTSTTCCHHHHHHHH
T ss_pred eecCCCCCCeeehHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh--ccCCCccccccHHhhcCCCCHHHHHHHH
Confidence 57777677999999999999999999887 5555555667777663 433210 00000 0000111111
Q ss_pred HHh-----CCCCHHHHHHHHhhcCCCCCCCCCCCcchhhHHH---HhhhHHHHH-HhhhcCCCCCCCCC
Q 001359 800 ALR-----DGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLA---VADRLDTLV-GLFAAGCQPSSTND 859 (1092)
Q Consensus 800 A~~-----~GE~~~VA~AI~EhYlPr~agD~LP~t~~G~iLS---LADKlDtLv-G~F~iG~~PTGSkD 859 (1092)
+.. .+--..++.-|. +.-|.+..+.++| .|||||.|. -.+..|. +-|+-|
T Consensus 125 i~~l~~~i~~~L~~~~~ii~---------g~~~~~~l~~ivs~~ldaDr~DYL~RDa~~~Gv-~~G~~d 183 (410)
T 2q14_A 125 MERMNKEMNGQLSLAIQIFK---------DEYPKRFLHQLVSGQLDMDRLDYLRRDSFYTGV-TEGNIG 183 (410)
T ss_dssp HHHHHHHTTTTTHHHHHHHT---------TCSSSTHHHHHHSSTTCHHHHHHHHHHHHHHCC-GGGCCC
T ss_pred HHHhhhhHHHHHHHHHHHHc---------CCCccchHHHhhcCCcCcHHHHHhcchHHHhCC-CCCCCC
Confidence 110 122223333332 1357889999999 999999987 2333453 245544
No 49
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=34.85 E-value=47 Score=37.45 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=47.2
Q ss_pred CCCcceEEeecCCCCCCCCCCCCCCccccceeeeEE--EEcCCCc---chHHHHHHHHHhcCCCCCCCceeEec
Q 001359 117 GPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQV--ILKPDPG---NSQDLFIRSLSALGIDVTEHDIRFVE 185 (1092)
Q Consensus 117 ~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qv--i~kp~p~---~~q~lyl~sl~~~gi~~~~hdirfve 185 (1092)
.+.|.+.+|++|+.|-.-.+.| |...++|.=+ +-.+++. .+..+|.+.|+.+|++ |++++-
T Consensus 98 ~~lP~rl~~~g~vfR~e~p~~g----R~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~lgl~----~~~i~i 163 (421)
T 1h4v_B 98 WPQPVRLWMAGPMFRAERPQKG----RYRQFHQVNYEALGSENPILDAEAVVLLYECLKELGLR----RLKVKL 163 (421)
T ss_pred cCCCeEEEEecCeecCCCCCCC----CcccEEEccEEEECCCChhhhHHHHHHHHHHHHHcCCC----ceEEEE
Confidence 3679999999999996655566 8889998766 3356654 6889999999999984 566653
No 50
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=32.94 E-value=14 Score=37.52 Aligned_cols=102 Identities=14% Similarity=0.119 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH-----hCCChhHHHHHHHHHHhhhhccccchhhcChhhhHHHHHHHHHhC------CC
Q 001359 737 KLGTMLDKTMRVQNMVRKLSLD-----LGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRD------GY 805 (1092)
Q Consensus 737 kLGSl~DK~~Ri~~La~~La~~-----l~~~~~~~~~~~RAA~LaKaDL~T~MV~EFPELQGiMG~yYA~~~------GE 805 (1092)
.==|+++.+.|+..+|..|+.. -++|. ..+..+|.|- |+.--.+|..|-=. ..+..|.... --
T Consensus 29 ~~esvaeHs~rVa~~A~~la~~~~~~~~~~d~---~~v~~~aLlH--D~~E~~~GD~p~~~-~~~~~~~~~E~~a~~~~l 102 (177)
T 2cqz_A 29 EPESIADHSFGVAFITLVLADVLEKRGKRIDV---EKALKMAIVH--DLAEAIITDIPLSA-QEFVDKDKAEALVFKKVF 102 (177)
T ss_dssp SCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCH---HHHHHHHHHT--TTTHHHHCCCCTTT-TTTSCHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHh--chHHHHcCCCcccc-ccHHHHHHHHHHHHHHHH
Confidence 3458999999999999999986 45543 4456677764 33322333322210 1111111000 00
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHHHhhhcCCC
Q 001359 806 SQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQ 853 (1092)
Q Consensus 806 ~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSLADKlDtLvG~F~iG~~ 853 (1092)
+++...+. -|- -+.|+.|.++.-|||||.++=+|.-+..
T Consensus 103 -~~i~~l~~-ef~-------~~~t~Ea~~vk~aDrL~a~l~a~~~~~~ 141 (177)
T 2cqz_A 103 -PEFYELYR-EYQ-------ECSSPEAQLVRIADKLDMILQAYQYELS 141 (177)
T ss_dssp -GGGHHHHH-HHH-------HTCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHH-Hhh-------cCCCHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 23333233 331 2679999999999999999887765543
No 51
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=32.47 E-value=2.4e+02 Score=33.72 Aligned_cols=290 Identities=12% Similarity=0.166 Sum_probs=146.8
Q ss_pred CCCcceEEeecCCCCCCCC-CCCCCCccccceeeeEEEEcCCCcchHHH--HHHH-HHhcCCCCCCCceeEecCCCCCcc
Q 001359 117 GPEPWNVAYVEPSIRPDDS-RYGENPNRLQRHTQFQVILKPDPGNSQDL--FIRS-LSALGIDVTEHDIRFVEDNWESPV 192 (1092)
Q Consensus 117 ~~~~~~~ayv~p~~rp~d~-ryg~npnrl~~~~q~qvi~kp~p~~~q~l--yl~s-l~~~gi~~~~hdirfved~we~p~ 192 (1092)
+..|.++..+-.+.||++. . .....+++|.=.++==.+-++-+| .+++ |+++|+ .++||..++=++|.
T Consensus 214 ~~~pvrlFEiGrVFr~D~~~d----~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~LGi----~~~rfrps~~~~p~ 285 (549)
T 2du7_A 214 RKLPLKLFSIDRCFRREQRED----RSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQFGF----TKFKFKPDEKKSKY 285 (549)
T ss_dssp SCSSEEEEEEEEECCCCSSCS----SSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGGTC----CCCCCEECTTCCTT
T ss_pred CCCCeEEEEEeeEEecCCccc----CcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCC----CeEEEEECCCCCcc
Confidence 5788999999999998531 1 113366777766665445555554 4444 456886 36888865312232
Q ss_pred cccccccceeeec-----C-eeeeeeeh----hhhcCCcccCcceeeehhhhHHHHHHHhCCCccceeeeCCCCceecc-
Q 001359 193 LGAWGLGWEIWMD-----G-MEITQFTY----FQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGEL- 261 (1092)
Q Consensus 193 lgawglgwevw~~-----g-meitqfty----fqq~gg~~~~~~~~eitygleri~m~~q~~~~~~~~~~~~~~~yg~~- 261 (1092)
+= =|--+||+++ | .||--+-- -.+.-|++......|| |||||+|..-+..++-++. |.++
T Consensus 286 yh-PGr~AeI~v~~~g~~gw~eIG~~GeVHP~VLk~~gId~~v~aFEL--gLErL~m~~~~i~dIR~~~------~~dls 356 (549)
T 2du7_A 286 YT-PETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVPVMNLGL--GVERLAMIIYGYEDVRAMV------YPQFY 356 (549)
T ss_dssp BC-TTTCEEEEECCSSSSCSEEEEEEEEBCHHHHHHTTCCSCEEEEEE--BHHHHHHHHTTCSCSHHHH------SSSSS
T ss_pred cC-CceEEEEEEecCCCCCcEEEEEEEEECHHHHHHcCCCCCeEEEEE--eHHHHHHHhcCCCcccccc------cCCcc
Confidence 11 1444778775 5 66654432 1234566655566676 7999999887765543333 3333
Q ss_pred -cccchhhhhccccccCCHH---HHHHHHHHHHHHHHHHHHcCCCcchhhhHHhhhhccccccccC--------Ccchhh
Q 001359 262 -FLENEKEMSAYYLEHANVH---HLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRG--------FVGVTE 329 (1092)
Q Consensus 262 -~~~~e~e~s~y~~~~~~~~---~~~~~f~~~~~e~~~~~~~~l~~pay~~~lk~sh~fn~ldar~--------~~~~~e 329 (1092)
|...++..+..= +..++. ...+++.+-+ +.+.+.=- |+.-..|.+-.-.+ |+|++.
T Consensus 357 rFPav~RDlAlvV-d~~~Vp~~v~~~~~a~~I~----~~i~~~~~-------Le~V~LFDVY~G~~i~eGkKSlA~sl~~ 424 (549)
T 2du7_A 357 EYRLSDRDIAGMI-RVDKVPILDEFYNFANELI----DICIANKD-------KESPCSVEVKREFNFNGERRVIKVEIFE 424 (549)
T ss_dssp CCCCCHHHHHTTC-CCSCCCSSHHHHHHHHHHH----HHHCCCCC-------CSSCCSCCCCCCCCSSSSCCCCEECCCC
T ss_pred cCCcccccEEEEE-cHHhCCcccccchHHHHHH----HHHHHhCC-------CCceEEEEEEcCCCCCCCceEEEEEEEE
Confidence 444455544321 111111 1122223222 22221100 55556665554322 233333
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-----HHhhcCCCCCCCCCCCCCCCChhhHHhhhcCCCCCccchhhhhcccCCCh--Hh
Q 001359 330 RARYFGRMRSLARQCAQLWLK-----TRKSLGHPLGIVSEPVDLPCPKELLEAAVKKLPDDPRLFVLEIGTEEMPP--QD 402 (1092)
Q Consensus 330 r~~~~~~~r~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lLlEIGtEELPa--~~ 402 (1092)
|..= .+.|.-+|++ .-.-+|-|-. ..++...-...+-|...|-+|. ++
T Consensus 425 r~~d-------r~l~g~~~~n~~~~~~~~~~~~p~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (549)
T 2du7_A 425 NEPN-------KKLLGPSVLNEVYVYDGNIYGIPPT------------------FEGVKEQYIPILKKAKEEGVSTNIRY 479 (549)
T ss_dssp CSTT-------SCSSCSCSCCCCEEETTEECCCCSS------------------CCSSSTTCSSSSSSSSSCCEECCCCH
T ss_pred ECCC-------CCcCChhhhceEEEecCcEEecCCc------------------ccccchhhhHHHHHHHHcCCCcCcch
Confidence 3211 0011111100 0001111110 0112222234566666666776 67
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCC-CcceeecccccceeeecccCccC---cchhhhhcCCcc
Q 001359 403 VVNASQQLKDLMLQLLNKQKLSH-GEVQAFGTPRRLVVFVESLCQKQ---SENEFEARGPPV 460 (1092)
Q Consensus 403 l~~a~~ql~~~~~~~L~~~~L~~-~~I~~f~TPRRLav~V~~l~~~q---~d~~~e~kGPpv 460 (1092)
+...+......+.+.+....-.+ -.++.--+|.-+-+.|..++.++ ....+.+|||-.
T Consensus 480 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~d~rgp~f 541 (549)
T 2du7_A 480 IDGIIYKLVAKIEEALVSNVDEFKFRVPIVRSLSDINLKIDELALKQIMGENKVIDVRGPVF 541 (549)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCCCCCCSSSSCSSSCCCCHHHHHHHTTTTCCBCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEEecChhhceeeecHHHHHHHhcCCceEEeeCceE
Confidence 88877777777777664431111 23455667777777777777664 356678889853
No 52
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=32.37 E-value=63 Score=38.45 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=52.2
Q ss_pred CCcceEEeecCCCCCCCCCCCCCCccccceeeeE-----EEEcCCC-------cchHHHHHHHHHhcCCCCCCCceeEec
Q 001359 118 PEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQ-----VILKPDP-------GNSQDLFIRSLSALGIDVTEHDIRFVE 185 (1092)
Q Consensus 118 ~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~q-----vi~kp~p-------~~~q~lyl~sl~~~gi~~~~hdirfve 185 (1092)
.=|.+.+.+.||.|---|-||-.-.=|.+=+||. ++++|.- ..+.++|-+-|+.|||+ .|.|+
T Consensus 289 dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLp-----yrvv~ 363 (522)
T 3vbb_A 289 DLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIP-----YHIVN 363 (522)
T ss_dssp TCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCC-----EEEEE
T ss_pred cCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCc-----eEEEE
Confidence 3499999999999988887886555555556663 4578875 44556788889999983 67765
Q ss_pred CCCCCcccccccc---cceeeecCe
Q 001359 186 DNWESPVLGAWGL---GWEIWMDGM 207 (1092)
Q Consensus 186 d~we~p~lgawgl---gwevw~~gm 207 (1092)
=. +--+|+..- --|||+-|.
T Consensus 364 l~--tgdlg~~asktyDiE~w~P~~ 386 (522)
T 3vbb_A 364 IV--SGSLNHAASKKLDLEAWFPGS 386 (522)
T ss_dssp CC--GGGCCTTCSEEEEEEEEETTT
T ss_pred cC--CccCCCchhheeceeEecCCC
Confidence 10 001222211 139999884
No 53
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=31.87 E-value=31 Score=38.82 Aligned_cols=60 Identities=18% Similarity=0.427 Sum_probs=43.1
Q ss_pred CCCcceEEeecCCCCCCCCCCCCCCccccceeee--EEEEcCCC---cchHHHHHHHHHhcCCCCCCCceeEe
Q 001359 117 GPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQF--QVILKPDP---GNSQDLFIRSLSALGIDVTEHDIRFV 184 (1092)
Q Consensus 117 ~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~--qvi~kp~p---~~~q~lyl~sl~~~gi~~~~hdirfv 184 (1092)
.+-|.+++|++|+.|-.-++. -|...|+|. -++..|++ ..+..+..+.|+.+|+ +|++++
T Consensus 98 ~~lP~r~~~~g~vfR~E~~~~----gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~lgl----~~~~i~ 162 (420)
T 1qe0_A 98 PNQPIKLYYNGPMFRYERKQK----GRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGL----KHLKLV 162 (420)
T ss_dssp SSCSEEEEEEEEEECC-----------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHTTC----CCEEEE
T ss_pred CCCCeEEEEecCEeecCCCcC----CCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHHcCC----CceEEE
Confidence 467999999999999664444 388899984 56777777 5777888999999998 356655
No 54
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}
Probab=31.31 E-value=27 Score=34.75 Aligned_cols=43 Identities=30% Similarity=0.437 Sum_probs=32.9
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCcccccccccce-eeec
Q 001359 154 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWE-IWMD 205 (1092)
Q Consensus 154 ~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgwe-vw~~ 205 (1092)
-||+| +.|..-++.+|+++ -||+|+..+=..+|-..||- ||++
T Consensus 149 ~Kp~~----~~~~~~~~~~~~~~-----~~vgD~~~~Di~~a~~aG~~~i~v~ 192 (220)
T 2zg6_A 149 VKPNP----KIFGFALAKVGYPA-----VHVGDIYELDYIGAKRSYVDPILLD 192 (220)
T ss_dssp ----C----CHHHHHHHHHCSSE-----EEEESSCCCCCCCSSSCSEEEEEBC
T ss_pred CCCCH----HHHHHHHHHcCCCe-----EEEcCCchHhHHHHHHCCCeEEEEC
Confidence 58988 57778899999987 79999999888999999997 4454
No 55
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=31.13 E-value=21 Score=41.54 Aligned_cols=58 Identities=28% Similarity=0.358 Sum_probs=43.0
Q ss_pred cccceeeecCe-eee-----------eeehhhhcCCc--------cc----CcceeeehhhhHHHHHHHhCCCccceeee
Q 001359 197 GLGWEIWMDGM-EIT-----------QFTYFQQAGSL--------QL----SPVSVEITYGLERILMLLQGVDHFKKIQY 252 (1092)
Q Consensus 197 glgwevw~~gm-eit-----------qftyfqq~gg~--------~~----~~~~~eitygleri~m~~q~~~~~~~~~~ 252 (1092)
---||+-+.|+ ||. |-.=|...|.- +. -|.++=+--|+||+.|++-|.+||.|..+
T Consensus 367 ~~rfdL~~~G~gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~Irdvi~ 446 (456)
T 3m4p_A 367 TESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCL 446 (456)
T ss_dssp ECEEEEEETTTEEEEEEEEBCCCHHHHHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSS
T ss_pred eEEEEEEeCCceEEccceeecCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccHHHeec
Confidence 34699999997 883 44455555531 11 36677788899999999999999999876
Q ss_pred CC
Q 001359 253 AD 254 (1092)
Q Consensus 253 ~~ 254 (1092)
=+
T Consensus 447 FP 448 (456)
T 3m4p_A 447 YP 448 (456)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 56
>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}
Probab=30.36 E-value=47 Score=32.55 Aligned_cols=82 Identities=21% Similarity=0.271 Sum_probs=56.4
Q ss_pred HHHhhhcCCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEEE------cCCCcchHHHHHHHHHhcCCCCCCCceeE
Q 001359 110 LTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVIL------KPDPGNSQDLFIRSLSALGIDVTEHDIRF 183 (1092)
Q Consensus 110 ~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~------kp~p~~~q~lyl~sl~~~gi~~~~hdirf 183 (1092)
..+|+.|... ++++-+-.+.+.- .+. .|.+|+..-+.. ||.| +.|..-++.+|+++ .++-+
T Consensus 111 ~~~l~~l~~~-~~~~i~t~~~~~l-~~~-----~l~~~f~~~~~~~~~~~~kp~~----~~~~~~~~~~~~~~--~~~~~ 177 (230)
T 3vay_A 111 QPTLEILAKT-FTLGVITNGNADV-RRL-----GLADYFAFALCAEDLGIGKPDP----APFLEALRRAKVDA--SAAVH 177 (230)
T ss_dssp HHHHHHHHTT-SEEEEEESSCCCG-GGS-----TTGGGCSEEEEHHHHTCCTTSH----HHHHHHHHHHTCCG--GGEEE
T ss_pred HHHHHHHHhC-CeEEEEECCchhh-hhc-----CcHHHeeeeEEccccCCCCcCH----HHHHHHHHHhCCCc--hheEE
Confidence 4567777666 7777775443321 111 244444433322 7777 78888999999976 56999
Q ss_pred ecCCCCCcccccccccceeee
Q 001359 184 VEDNWESPVLGAWGLGWEIWM 204 (1092)
Q Consensus 184 ved~we~p~lgawglgwevw~ 204 (1092)
|.|+.+|=..+|--.||-+.+
T Consensus 178 vGD~~~~Di~~a~~aG~~~~~ 198 (230)
T 3vay_A 178 VGDHPSDDIAGAQQAGMRAIW 198 (230)
T ss_dssp EESCTTTTHHHHHHTTCEEEE
T ss_pred EeCChHHHHHHHHHCCCEEEE
Confidence 999998889999999987543
No 57
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=30.04 E-value=93 Score=36.24 Aligned_cols=115 Identities=9% Similarity=0.104 Sum_probs=76.2
Q ss_pred cchhhhhcccCCChHhHHHHHHHHHHHHHHHHHhCCCCCCcce-eecccccceeeecccCccCcchhhhhcCCccccccc
Q 001359 387 RLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQ-AFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFD 465 (1092)
Q Consensus 387 ~~lLlEIGtEELPa~~l~~a~~ql~~~~~~~L~~~~L~~~~I~-~f~TPRRLav~V~~l~~~q~d~~~e~kGPpv~~Afd 465 (1092)
.-+.+++..+++|+..+-+=++-..+.+.+.|+.++...=... +|+-- +- +++-.+....-...+...|||+-.
T Consensus 277 ~~~~~~f~~p~~~~D~l~pQl~k~~~~i~~~L~~~gF~v~~~~~~~~~~-~~-~l~~e~~~~~lp~~~~~~GPpv~~--- 351 (437)
T 1r89_A 277 AVFAVKFRKPDIVDDNLYPQLERASRKIFEFLERENFMPLRSAFKASEE-FC-YLLFECQIKEISRVFRRMGPQFED--- 351 (437)
T ss_dssp EEEEEEEECCSCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECSS-EE-EEEEEESCSCCCSEEEEEEEETTC---
T ss_pred EEEEEEECCCCCCcccchHHHHHHHHHHHHHHHHCCCEEEEecccccCC-ee-EEEEEEcccccCCeeEeeCCCccc---
Confidence 3477777778999999999999999999999999987653333 34423 43 444455666667788999999821
Q ss_pred cCCCCcHHHHHHHHHCCCCccCceEEEeCCeeEEEEEEEecchhHHHHHHHH
Q 001359 466 QQGNPTKAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSED 517 (1092)
Q Consensus 466 ~dG~pTkAa~GFak~~Gv~~~~L~~~~~~kgeYl~~~k~~~G~~t~eiL~~i 517 (1092)
...+++|.+++- .. --.+ ++|.|+..+ ..+=..+.++|..-
T Consensus 352 -----~~~~~~F~~k~~-~~-g~~i---~~~r~~~~~-~R~~~~~~~~l~~~ 392 (437)
T 1r89_A 352 -----ERNVKKFLSRNR-AF-RPFI---ENGRWWAFE-MRKFTTPEEGVRSY 392 (437)
T ss_dssp -----HHHHHHHHHSCC-SS-CCEE---ETTEEEEEE-ECSCSSHHHHHHHH
T ss_pred -----hhhHHHHHHhcC-CC-CCce---eCCEEEEEE-EEeeCCHHHHHHhh
Confidence 256899999882 10 1132 345655443 33455666766653
No 58
>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}
Probab=29.97 E-value=22 Score=34.85 Aligned_cols=49 Identities=24% Similarity=0.362 Sum_probs=38.0
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCccccccccccee-eec
Q 001359 154 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI-WMD 205 (1092)
Q Consensus 154 ~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgwev-w~~ 205 (1092)
.||+|.-++..--. ++.+|+++ .++-||.|+++|=..+|--.||-+ |++
T Consensus 151 ~KP~~~~~~~~l~~-~~~lgi~~--~~~~~vGD~~~~Di~~a~~aG~~~~~~~ 200 (240)
T 3smv_A 151 YKPNPNNFTYMIDA-LAKAGIEK--KDILHTAESLYHDHIPANDAGLVSAWIY 200 (240)
T ss_dssp CTTSHHHHHHHHHH-HHHTTCCG--GGEEEEESCTTTTHHHHHHHTCEEEEEC
T ss_pred CCCCHHHHHHHHHH-HHhcCCCc--hhEEEECCCchhhhHHHHHcCCeEEEEc
Confidence 48888755544333 89999976 679999999999999999999975 444
No 59
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=28.92 E-value=46 Score=38.59 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=40.7
Q ss_pred CCcceEEeecCCCCCCCCCCCCCCccccceee--eEEEEcCCC---cchHHHHHHHHHhcCC
Q 001359 118 PEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQ--FQVILKPDP---GNSQDLFIRSLSALGI 174 (1092)
Q Consensus 118 ~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q--~qvi~kp~p---~~~q~lyl~sl~~~gi 174 (1092)
+.|.+.+|+.|+.|-.-+.. -|...|+| +=++.-++| ..+..++.+.|+.+|+
T Consensus 128 ~lP~r~~~~g~vfR~E~~~~----gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~lGl 185 (467)
T 4e51_A 128 DGPKRLWYIGPMFRHERPQR----GRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDLGL 185 (467)
T ss_dssp TSCEEEEEEEEEECCCCC-------CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEccEEccCCCCC----CCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHHcCC
Confidence 46999999999998544333 37789999 556777777 3577899999999998
No 60
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A
Probab=28.92 E-value=16 Score=38.30 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=38.2
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCccccccccccee-eec
Q 001359 154 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI-WMD 205 (1092)
Q Consensus 154 ~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgwev-w~~ 205 (1092)
-||+| +.|+.-++.+|+++ +++-||+|+ .+=..||-..|+-+ |++
T Consensus 186 ~KP~p----~~~~~~~~~lg~~p--~~~l~VgDs-~~di~aA~~aG~~~i~v~ 231 (261)
T 1yns_A 186 HKVES----ESYRKIADSIGCST--NNILFLTDV-TREASAAEEADVHVAVVV 231 (261)
T ss_dssp CTTCH----HHHHHHHHHHTSCG--GGEEEEESC-HHHHHHHHHTTCEEEEEC
T ss_pred CCCCH----HHHHHHHHHhCcCc--ccEEEEcCC-HHHHHHHHHCCCEEEEEe
Confidence 48887 68889999999976 679999999 88899999999974 653
No 61
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=28.67 E-value=89 Score=36.80 Aligned_cols=82 Identities=21% Similarity=0.248 Sum_probs=55.0
Q ss_pred CCcceEEeecCCCCCCCCCCCCCCccccceeee-----EEEEcCCC-------cchHHHHHHHHHhcCCCCCCCceeEec
Q 001359 118 PEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQF-----QVILKPDP-------GNSQDLFIRSLSALGIDVTEHDIRFVE 185 (1092)
Q Consensus 118 ~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~-----qvi~kp~p-------~~~q~lyl~sl~~~gi~~~~hdirfve 185 (1092)
.=|.+.+-+.||.|---|-||..-.=|.+-||| -++++|.- ..+.++|-+=|+.||++ .|.|+
T Consensus 287 dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLp-----yrvv~ 361 (484)
T 3lss_A 287 KEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLP-----YRVVN 361 (484)
T ss_dssp SSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCC-----EEEEE
T ss_pred hCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCc-----EEEEE
Confidence 348999999999999988788655555566666 25678875 44556778889999983 67765
Q ss_pred -CCCCCcccccccc---cceeeecCe
Q 001359 186 -DNWESPVLGAWGL---GWEIWMDGM 207 (1092)
Q Consensus 186 -d~we~p~lgawgl---gwevw~~gm 207 (1092)
+-| -+|...- =-|||+-|.
T Consensus 362 l~tg---dlg~~a~~~yDiE~w~P~~ 384 (484)
T 3lss_A 362 ICSG---ALNNAAAKKYDLEAWFPAS 384 (484)
T ss_dssp CCTT---TCCSSCSEEEEEEEEETTT
T ss_pred cCCc---ccCCchhheechheecCCC
Confidence 111 1222211 139999884
No 62
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}
Probab=26.50 E-value=34 Score=33.44 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=36.9
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCcccccccccceee
Q 001359 154 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIW 203 (1092)
Q Consensus 154 ~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgwevw 203 (1092)
.||.| +.|..-++.+|+++ .++-+|.|+.+|=..+|--.||-+.
T Consensus 157 ~kp~~----~~~~~~~~~lgi~~--~~~~~iGD~~~nDi~~a~~aG~~~~ 200 (235)
T 2om6_A 157 YKPRK----EMFEKVLNSFEVKP--EESLHIGDTYAEDYQGARKVGMWAV 200 (235)
T ss_dssp CTTCH----HHHHHHHHHTTCCG--GGEEEEESCTTTTHHHHHHTTSEEE
T ss_pred CCCCH----HHHHHHHHHcCCCc--cceEEECCChHHHHHHHHHCCCEEE
Confidence 36765 67888899999987 5799999999999999998999854
No 63
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=26.09 E-value=3e+02 Score=33.63 Aligned_cols=121 Identities=15% Similarity=0.283 Sum_probs=71.9
Q ss_pred CCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEEEcCCCcchHHH--HHHHH-HhcCCCCCCCceeEecCCCCCccc
Q 001359 117 GPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDL--FIRSL-SALGIDVTEHDIRFVEDNWESPVL 193 (1092)
Q Consensus 117 ~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~q~l--yl~sl-~~~gi~~~~hdirfved~we~p~l 193 (1092)
+..|.++.-+-.+.||++. . .+....+++|.=.++==.+-++-+| .|++| +++|+ .++||+.++=++|.+
T Consensus 221 ~~~pvRLFEIGrVFR~D~~-l--Dath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~LGi----~~vrfrpse~~~p~y 293 (648)
T 2odr_B 221 KPLPFKLFSIDRCFRREQK-E--DKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGF----TNFKFIPDEKKSKYY 293 (648)
T ss_dssp SCSCEEEEEEEEEECCCSC-C--CSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTC----CCEEEEECTTCCTTB
T ss_pred CCCCeEEEEEeeEEecCcc-c--cccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCC----CeEEEEECCCCCcCc
Confidence 5678887777778887431 0 2223467777776665545555554 44444 56786 379998653222322
Q ss_pred ccccccceeeec-----C-eeeeeeehh----hhcCCcccCcceeeehhhhHHHHHHHhCCCcc
Q 001359 194 GAWGLGWEIWMD-----G-MEITQFTYF----QQAGSLQLSPVSVEITYGLERILMLLQGVDHF 247 (1092)
Q Consensus 194 gawglgwevw~~-----g-meitqftyf----qq~gg~~~~~~~~eitygleri~m~~q~~~~~ 247 (1092)
= =|--+||+++ | .||--+--+ .+.-|++......|| |||||+|..-+...+
T Consensus 294 h-PGreAEI~v~~~g~~GW~EIG~~GeVHP~VLk~~GId~~V~AFEL--gLErLaml~~gi~DI 354 (648)
T 2odr_B 294 T-PETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGL--GVERLAMISGNFADV 354 (648)
T ss_dssp C-TTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEE--EHHHHHHHHTTCSCH
T ss_pred C-CceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEEEEE--eHHHHHHHhcCCCcc
Confidence 1 1444788775 4 666544221 234566655566776 799999988776543
No 64
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=25.75 E-value=3e+02 Score=33.74 Aligned_cols=121 Identities=15% Similarity=0.283 Sum_probs=72.2
Q ss_pred CCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEEEcCCCcchHHH--HHHHH-HhcCCCCCCCceeEecCCCCCccc
Q 001359 117 GPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDL--FIRSL-SALGIDVTEHDIRFVEDNWESPVL 193 (1092)
Q Consensus 117 ~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~q~l--yl~sl-~~~gi~~~~hdirfved~we~p~l 193 (1092)
+..|.++.-+-.+.||++. . .+....+++|.=.++==.+-++-+| .|++| +++|+ .++||..++=++|.+
T Consensus 221 ~~~pvRLFEIGrVFR~D~~-l--Dath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~LGi----~~vrfrpse~~~p~y 293 (685)
T 2odr_D 221 KPLPFKLFSIDRCFRREQK-E--DKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGF----TNFKFIPDEKKSKYY 293 (685)
T ss_dssp SCSCEEEEEEEEEECCCSC-C--CSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTC----CCEEEEECTTCCTTB
T ss_pred CCCCeEEEEeccEEecCcc-c--cccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCC----CeEEEEECCCCCCCc
Confidence 5678888777788887431 0 2223466777776665545555554 44444 56786 379998653222322
Q ss_pred ccccccceeeec-----C-eeeeeeehh----hhcCCcccCcceeeehhhhHHHHHHHhCCCcc
Q 001359 194 GAWGLGWEIWMD-----G-MEITQFTYF----QQAGSLQLSPVSVEITYGLERILMLLQGVDHF 247 (1092)
Q Consensus 194 gawglgwevw~~-----g-meitqftyf----qq~gg~~~~~~~~eitygleri~m~~q~~~~~ 247 (1092)
= =|--+||+++ | .||--+--+ .+.-|++-.....|| |||||+|..-++..+
T Consensus 294 H-PGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V~AFEL--gLErLamlk~gi~DI 354 (685)
T 2odr_D 294 T-PETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGL--GVERLAMISGNFADV 354 (685)
T ss_dssp C-TTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEE--EHHHHHHHHTTCSCH
T ss_pred C-CceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEEEEE--eHHHHHHHhcCCCcc
Confidence 1 1444788775 4 666544221 234566655566776 799999988777543
No 65
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A
Probab=25.60 E-value=37 Score=33.29 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=52.3
Q ss_pred EcCCCcchHHHHHHHHHhcC-CCCCCCceeEecCCCCCcccccccccce-eeecCeeeeeeehhhhcCCcccCcceeeeh
Q 001359 154 LKPDPGNSQDLFIRSLSALG-IDVTEHDIRFVEDNWESPVLGAWGLGWE-IWMDGMEITQFTYFQQAGSLQLSPVSVEIT 231 (1092)
Q Consensus 154 ~kp~p~~~q~lyl~sl~~~g-i~~~~hdirfved~we~p~lgawglgwe-vw~~gmeitqftyfqq~gg~~~~~~~~eit 231 (1092)
-||.| +.|..-++.+| +++ .++-+|.|+.+|=..+|--.||- ||++.-. ..-..+..+--++
T Consensus 157 ~kp~~----~~~~~~~~~~g~~~~--~~~i~vGD~~~~Di~~a~~aG~~~i~~~~~~----------~~~~~~~~ad~v~ 220 (238)
T 3ed5_A 157 QKPMK----EYFNYVFERIPQFSA--EHTLIIGDSLTADIKGGQLAGLDTCWMNPDM----------KPNVPEIIPTYEI 220 (238)
T ss_dssp CTTCH----HHHHHHHHTSTTCCG--GGEEEEESCTTTTHHHHHHTTCEEEEECTTC----------CCCTTCCCCSEEE
T ss_pred CCCCh----HHHHHHHHHcCCCCh--hHeEEECCCcHHHHHHHHHCCCEEEEECCCC----------CCCcccCCCCeEE
Confidence 36666 67888899999 876 57999999999999999999995 5654311 0112233344455
Q ss_pred hhhHHHHHHHhCCCc
Q 001359 232 YGLERILMLLQGVDH 246 (1092)
Q Consensus 232 ygleri~m~~q~~~~ 246 (1092)
..++-|.-+|+...+
T Consensus 221 ~~~~el~~~l~~~~~ 235 (238)
T 3ed5_A 221 RKLEELYHILNIENT 235 (238)
T ss_dssp SSGGGHHHHHTCCCC
T ss_pred CCHHHHHHHHHhhcc
Confidence 666667666665443
No 66
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=25.49 E-value=3.1e+02 Score=33.57 Aligned_cols=121 Identities=15% Similarity=0.283 Sum_probs=71.9
Q ss_pred CCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEEEcCCCcchHHH--HHHHH-HhcCCCCCCCceeEecCCCCCccc
Q 001359 117 GPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDL--FIRSL-SALGIDVTEHDIRFVEDNWESPVL 193 (1092)
Q Consensus 117 ~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~q~l--yl~sl-~~~gi~~~~hdirfved~we~p~l 193 (1092)
+..|.++.-+-.+.||++. . .+....+++|.=.++==.+-++-+| .|++| +++|+ .++||..++=++|.+
T Consensus 221 ~~~pvRLFEIGrVFR~D~~-l--Dath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~LGi----~~vrfrpse~~~p~y 293 (665)
T 2odr_A 221 KPLPFKLFSIDRCFRREQK-E--DKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGF----TNFKFIPDEKKSKYY 293 (665)
T ss_dssp SCSCEEEEEEEEEECCCSC-C--CSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTC----CCEEEEECTTCCTTB
T ss_pred CCCCeEEEEEeeEEecCcc-c--cccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCC----CeEEEEECCCCCCCc
Confidence 5678888777778887431 0 2223466777776665445555554 44444 56786 379998653222322
Q ss_pred ccccccceeeec-----C-eeeeeeehh----hhcCCcccCcceeeehhhhHHHHHHHhCCCcc
Q 001359 194 GAWGLGWEIWMD-----G-MEITQFTYF----QQAGSLQLSPVSVEITYGLERILMLLQGVDHF 247 (1092)
Q Consensus 194 gawglgwevw~~-----g-meitqftyf----qq~gg~~~~~~~~eitygleri~m~~q~~~~~ 247 (1092)
= =|--+||+++ | .||--+--+ .+.-|++......|| |||||+|..-+...+
T Consensus 294 h-PGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V~AFEL--gLErLaml~~gi~DI 354 (665)
T 2odr_A 294 T-PETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGL--GVERLAMISGNFADV 354 (665)
T ss_dssp C-TTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEE--EHHHHHHHHTTCSCH
T ss_pred C-CceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEEEEE--eHHHHHHHhcCCCcc
Confidence 1 1444788775 4 666544221 234566655566776 799999988776543
No 67
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=25.28 E-value=45 Score=25.73 Aligned_cols=21 Identities=14% Similarity=0.422 Sum_probs=15.3
Q ss_pred CCCCChhhhhHHHHHHHHHHH
Q 001359 855 SSTNDPFGLRRISYGLVQILI 875 (1092)
Q Consensus 855 TGSkDPfALRRaAlGIIrILi 875 (1092)
++|+||...--.-+||+..++
T Consensus 3 ~dSsDplviaA~IigiLHlil 23 (35)
T 2ljb_A 3 NDSSDPLVVAASIIGILHFIA 23 (35)
T ss_dssp ---CCTHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHH
Confidence 689999999888888888763
No 68
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=24.60 E-value=3.3e+02 Score=33.55 Aligned_cols=121 Identities=15% Similarity=0.283 Sum_probs=71.9
Q ss_pred CCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEEEcCCCcchHHH--HHHHH-HhcCCCCCCCceeEecCCCCCccc
Q 001359 117 GPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDL--FIRSL-SALGIDVTEHDIRFVEDNWESPVL 193 (1092)
Q Consensus 117 ~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~q~l--yl~sl-~~~gi~~~~hdirfved~we~p~l 193 (1092)
+..|.++.-+-.+.||++. . .+....+++|.=.++==.+-++-+| .|++| +++|+ .++||..++=++|.+
T Consensus 221 ~~~pvRLFEIGrVFR~D~~-l--Dath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~LGi----~~vrfrpse~~~p~y 293 (701)
T 2odr_C 221 KPLPFKLFSIDRCFRREQK-E--DKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGF----TNFKFIPDEKKSKYY 293 (701)
T ss_dssp SCSCEEEEEEEEEECCCSC-C--CSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTC----CCEEEEECTTCCTTB
T ss_pred CCCCeEEEEEeeEEccCcc-c--cccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCC----CeEEEEECCCCCCCc
Confidence 5678887777778887431 0 2223467777776665545555554 44444 56786 379998653223322
Q ss_pred ccccccceeeec-----C-eeeeeeehh----hhcCCcccCcceeeehhhhHHHHHHHhCCCcc
Q 001359 194 GAWGLGWEIWMD-----G-MEITQFTYF----QQAGSLQLSPVSVEITYGLERILMLLQGVDHF 247 (1092)
Q Consensus 194 gawglgwevw~~-----g-meitqftyf----qq~gg~~~~~~~~eitygleri~m~~q~~~~~ 247 (1092)
= =|--+||+++ | .||--+--+ .+.-|++-.....|| |||||+|..-+...+
T Consensus 294 H-PGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V~AFEL--gLErLamlk~gi~DI 354 (701)
T 2odr_C 294 T-PETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGL--GVERLAMISGNFADV 354 (701)
T ss_dssp C-TTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEE--EHHHHHHHHTTCSCH
T ss_pred C-CceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEEEEE--eHHHHHHHhcCCCcc
Confidence 1 1444788775 4 666544221 234566655566776 799999988776543
No 69
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=24.46 E-value=21 Score=35.01 Aligned_cols=43 Identities=33% Similarity=0.499 Sum_probs=35.9
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCcccccccccce-ee
Q 001359 154 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWE-IW 203 (1092)
Q Consensus 154 ~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgwe-vw 203 (1092)
.||+| +.|+.-++.+|++| +++-||+|. .+=..||--.|+- ||
T Consensus 139 ~KP~p----~~~~~a~~~lg~~p--~e~l~VgDs-~~Di~aA~~aG~~~i~ 182 (216)
T 3kbb_A 139 GKPDP----EIYLLVLERLNVVP--EKVVVFEDS-KSGVEAAKSAGIERIY 182 (216)
T ss_dssp CTTST----HHHHHHHHHHTCCG--GGEEEEECS-HHHHHHHHHTTCCCEE
T ss_pred CcccH----HHHHHHHHhhCCCc--cceEEEecC-HHHHHHHHHcCCcEEE
Confidence 48988 47889999999987 579999998 4678899989986 45
No 70
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=24.38 E-value=75 Score=36.76 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=39.4
Q ss_pred hcCCCcceEEeecCCCCCCCCCCCCCCc--ccccee-eeEEEE-cCCCcc-------hHHHHHHHHHhcCCCC
Q 001359 115 VLGPEPWNVAYVEPSIRPDDSRYGENPN--RLQRHT-QFQVIL-KPDPGN-------SQDLFIRSLSALGIDV 176 (1092)
Q Consensus 115 ~l~~~~~~~ayv~p~~rp~d~ryg~npn--rl~~~~-q~qvi~-kp~p~~-------~q~lyl~sl~~~gi~~ 176 (1092)
+..+-|.+++|+.||.|=.-. |.. . |..+|+ |.=+-+ =-+|.. +.++|.+-++.|||+.
T Consensus 120 s~r~LP~rl~qig~~fR~E~~--~~r-Gl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~~~~~~LGl~~ 189 (459)
T 1nj8_A 120 VHTDLPIKIYQIVNTFRYETK--HTR-PLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPY 189 (459)
T ss_dssp BTTSCCCCEEEEECCBCCCCS--CCB-TTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hcccCCeEEEEEccEecCccC--CCC-CceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCce
Confidence 345679999999999983321 211 4 888888 654321 122222 5678999999999964
No 71
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=24.04 E-value=48 Score=26.45 Aligned_cols=21 Identities=14% Similarity=0.491 Sum_probs=15.8
Q ss_pred CCCCChhhhhHHHHHHHHHHH
Q 001359 855 SSTNDPFGLRRISYGLVQILI 875 (1092)
Q Consensus 855 TGSkDPfALRRaAlGIIrILi 875 (1092)
++|+||...--.-+||+.+++
T Consensus 3 ~dssdplv~aa~iiGIlHLiL 23 (43)
T 2kih_A 3 NDSSDPLVVAANIIGILHLIL 23 (43)
T ss_dssp ---CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHH
Confidence 689999999999999988764
No 72
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=23.73 E-value=95 Score=34.53 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=38.5
Q ss_pred CCcceEEeecCCCCCCCCCCCCCCccccceeeeEE--EEcCCC---cchHHHHHHHHHhcCCC
Q 001359 118 PEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQV--ILKPDP---GNSQDLFIRSLSALGID 175 (1092)
Q Consensus 118 ~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qv--i~kp~p---~~~q~lyl~sl~~~gi~ 175 (1092)
+.|.+.+|++|+.|..-.+.| |...++|.=+ +-.+++ ..+..++.+.|+.+|++
T Consensus 115 ~~P~rl~y~g~vfR~e~p~~g----R~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~~lgl~ 173 (344)
T 1z7m_A 115 STSARYSYFGKIFRKEKRHKG----RSTENYQIGIELFGESADKSELEILSLALQVIEQLGLN 173 (344)
T ss_dssp CCCEEEEEEEECCCCCC-----------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEEECcEEccCCCCCC----CcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 579999999999997765555 8899999766 445554 36788999999999983
No 73
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=23.66 E-value=55 Score=39.15 Aligned_cols=58 Identities=26% Similarity=0.425 Sum_probs=44.4
Q ss_pred cccccceeeecCeeee-----------eeehhhhcCCccc-------------CcceeeehhhhHHHHHHHhCCCcccee
Q 001359 195 AWGLGWEIWMDGMEIT-----------QFTYFQQAGSLQL-------------SPVSVEITYGLERILMLLQGVDHFKKI 250 (1092)
Q Consensus 195 awglgwevw~~gmeit-----------qftyfqq~gg~~~-------------~~~~~eitygleri~m~~q~~~~~~~~ 250 (1092)
-+---||+-+.|+||. |-.-|...| ++- -|.++=+--|+||+.|++-|.+||.|.
T Consensus 458 ~~~~rFDL~i~G~Ei~nG~~rl~Dp~~~~~R~~~~G-~d~~~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~~nIRdV 536 (548)
T 3i7f_A 458 NYSNSYDVFVRGQEITSGAQRIHDPEFLMKRCIEKG-VDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKV 536 (548)
T ss_dssp TBBSEEEEEETTEEEEEEEEECCCHHHHHHHHHHTT-CCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGG
T ss_pred CeEEEEEEEECCEEEeeCeeecCCHHHHHHHHHHcC-CChHHHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCCccHHHh
Confidence 3556799999999995 555566554 221 366677788999999999999999998
Q ss_pred eeC
Q 001359 251 QYA 253 (1092)
Q Consensus 251 ~~~ 253 (1092)
.+=
T Consensus 537 i~F 539 (548)
T 3i7f_A 537 TLF 539 (548)
T ss_dssp SSS
T ss_pred hcC
Confidence 654
No 74
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A
Probab=23.10 E-value=24 Score=35.10 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=57.4
Q ss_pred HHHhhhcCCCcceEEeecCCCCCCCC----C-CCCCCccccceeeeEEE------EcCCCcchHHHHHHHHHhcCCCCCC
Q 001359 110 LTFLRVLGPEPWNVAYVEPSIRPDDS----R-YGENPNRLQRHTQFQVI------LKPDPGNSQDLFIRSLSALGIDVTE 178 (1092)
Q Consensus 110 ~t~~~~l~~~~~~~ayv~p~~rp~d~----r-yg~npnrl~~~~q~qvi------~kp~p~~~q~lyl~sl~~~gi~~~~ 178 (1092)
..+|+.|... ++++-+--+.+..=. + |...-..|..|+..-+. -||+| +.|..-++.+|+++
T Consensus 118 ~~~l~~l~~~-~~~~i~Sn~~~~~~~~~~~~l~~~~~~~l~~~fd~i~~~~~~~~~KP~~----~~~~~~~~~~g~~~-- 190 (229)
T 4dcc_A 118 LDLLLKLREK-YVVYLLSNTNDIHWKWVCKNAFPYRTFKVEDYFEKTYLSYEMKMAKPEP----EIFKAVTEDAGIDP-- 190 (229)
T ss_dssp HHHHHHHTTT-SEEEEEECCCHHHHHHHHHHTSCBTTBCHHHHCSEEEEHHHHTCCTTCH----HHHHHHHHHHTCCG--
T ss_pred HHHHHHHHhc-CcEEEEECCChHHHHHHHhhhhhhccCCHHHhCCEEEeecccCCCCCCH----HHHHHHHHHcCCCH--
Confidence 4578888777 888777544322100 0 00011224444443222 48887 67889999999875
Q ss_pred CceeEecCCCCCcccccccccce-eeecC
Q 001359 179 HDIRFVEDNWESPVLGAWGLGWE-IWMDG 206 (1092)
Q Consensus 179 hdirfved~we~p~lgawglgwe-vw~~g 206 (1092)
.++-||.|.. +=..+|--.||- ||+++
T Consensus 191 ~~~~~vGD~~-~Di~~a~~aG~~~i~v~~ 218 (229)
T 4dcc_A 191 KETFFIDDSE-INCKVAQELGISTYTPKA 218 (229)
T ss_dssp GGEEEECSCH-HHHHHHHHTTCEEECCCT
T ss_pred HHeEEECCCH-HHHHHHHHcCCEEEEECC
Confidence 5699999998 779999999988 55554
No 75
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
Probab=22.60 E-value=41 Score=35.04 Aligned_cols=47 Identities=26% Similarity=0.419 Sum_probs=39.3
Q ss_pred EEcCCCcchHHHHHHHHHhc----CCCCCCCceeEecCCCCCccccccccccee-eec
Q 001359 153 ILKPDPGNSQDLFIRSLSAL----GIDVTEHDIRFVEDNWESPVLGAWGLGWEI-WMD 205 (1092)
Q Consensus 153 i~kp~p~~~q~lyl~sl~~~----gi~~~~hdirfved~we~p~lgawglgwev-w~~ 205 (1092)
.-||+|. +|..-++.+ |+++ +++-||.|+.++=..||-..||-. |+.
T Consensus 202 ~~KP~p~----~~~~a~~~l~~~~~~~~--~~~~~VGD~~~~Di~~A~~aG~~~i~v~ 253 (284)
T 2hx1_A 202 FGKPDSQ----MFMFAYDMLRQKMEISK--REILMVGDTLHTDILGGNKFGLDTALVL 253 (284)
T ss_dssp ESTTSSH----HHHHHHHHHHTTSCCCG--GGEEEEESCTTTHHHHHHHHTCEEEEES
T ss_pred ecCCCHH----HHHHHHHHHhhccCCCc--ceEEEECCCcHHHHHHHHHcCCeEEEEC
Confidence 4699984 788889999 9866 679999999999999999999974 543
No 76
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=22.57 E-value=2.8e+02 Score=31.17 Aligned_cols=165 Identities=18% Similarity=0.260 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHhhcCceeeecccc--------ccccccCCH-------------HH----------------------
Q 001359 75 TFQQAIQRLQEYWASVGCSVMQCSNT--------EVGAGTMNP-------------LT---------------------- 111 (1092)
Q Consensus 75 ~~q~~i~~l~~~w~~~gc~~~~p~~~--------e~gagt~~p-------------~t---------------------- 111 (1092)
..|.++..+.++....|.......-+ ..+...-|| .+
T Consensus 102 p~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp 181 (350)
T 1b7y_A 102 PITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSP 181 (350)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTH
T ss_pred HHHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchH
Confidence 37899999999999999876651111 111222222 11
Q ss_pred -Hhhhc--CCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEEE--c-CCCcchHHHHHHHHHhc-CCCCCCCceeEe
Q 001359 112 -FLRVL--GPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVIL--K-PDPGNSQDLFIRSLSAL-GIDVTEHDIRFV 184 (1092)
Q Consensus 112 -~~~~l--~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~--k-p~p~~~q~lyl~sl~~~-gi~~~~hdirfv 184 (1092)
.+|++ |..|.++.-+-.+.|+++. ..-....++|.=.++ + -+-.++...--.-++.+ |++ .++||.
T Consensus 182 ~llr~l~~~~~piriFEiGrVFR~d~~----d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~lfG~~---~~~r~r 254 (350)
T 1b7y_A 182 MQVRYMVAHTPPFRIVVPGRVFRFEQT----DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFGPD---SKVRFQ 254 (350)
T ss_dssp HHHHHHHHCCSSEEEEEEEEEECCCCC----CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHSCSS---CCEEEE
T ss_pred HHHHHHHhcCCCeeEEEeeeEEECCCC----CCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhhcCCC---ceEEEe
Confidence 12222 4567788778888897531 111224555554444 2 12334444444445666 864 258887
Q ss_pred cCC--CCCcccccc-----cccc-eeeecCeeeeeeehhhhc------CCccc-----CcceeeehhhhHHHHHHHhCCC
Q 001359 185 EDN--WESPVLGAW-----GLGW-EIWMDGMEITQFTYFQQA------GSLQL-----SPVSVEITYGLERILMLLQGVD 245 (1092)
Q Consensus 185 ed~--we~p~lgaw-----glgw-evw~~gmeitqftyfqq~------gg~~~-----~~~~~eitygleri~m~~q~~~ 245 (1092)
... +-.|..-+- |=|| ||-.=|| |- =...+.+ +|++- .....|| |||||+|..-|++
T Consensus 255 ps~fPft~Ps~e~~i~~~~~g~w~eIg~~G~-Vh-P~Vl~~~~~~~~~~gid~~~~~~~~~afgl--glerl~ml~~gi~ 330 (350)
T 1b7y_A 255 PVYFPFVEPGAQFAVWWPEGGKWLELGGAGM-VH-PKVFQAVDAYRERLGLPPAYRGVTGFAFGL--GVERLAMLRYGIP 330 (350)
T ss_dssp ECCBTTEEEEEEEEEEETTTTEEEEEEEEEE-EC-HHHHHHHHHHHHHTTCCCCCTTCEEEEEEE--EHHHHHHHHTTCC
T ss_pred cCCCCCCCCccEEEEEEEeCCCeEEEEEEEE-Ee-HHHHHhhccccccCCCCCccccceEEEEEE--eHHHHHHHHcCCC
Confidence 643 444544321 1145 2222222 11 0222333 25542 2234454 8999999999999
Q ss_pred cccee
Q 001359 246 HFKKI 250 (1092)
Q Consensus 246 ~~~~~ 250 (1092)
++-++
T Consensus 331 DiR~~ 335 (350)
T 1b7y_A 331 DIRYF 335 (350)
T ss_dssp CGGGT
T ss_pred hHHHH
Confidence 87755
No 77
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=22.40 E-value=35 Score=38.35 Aligned_cols=57 Identities=23% Similarity=0.457 Sum_probs=42.5
Q ss_pred ccccceeeecCeeee-----------eeehhhhc------CCccc--------------CcceeeehhhhHHHHHHHhCC
Q 001359 196 WGLGWEIWMDGMEIT-----------QFTYFQQA------GSLQL--------------SPVSVEITYGLERILMLLQGV 244 (1092)
Q Consensus 196 wglgwevw~~gmeit-----------qftyfqq~------gg~~~--------------~~~~~eitygleri~m~~q~~ 244 (1092)
..-.||+-++|+||. |-.-|..- +|.+- -|+++=+--|+|||.|+|-|.
T Consensus 252 ~a~~fDL~~~G~Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~~yl~al~yG~PPhgG~glGiDRLvmll~g~ 331 (345)
T 3a5y_A 252 VAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGA 331 (345)
T ss_dssp BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHCCCSEEEEEEEHHHHHHHHHTC
T ss_pred eEEEEEEEECCEEEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCcEEEEcHHHHHHHHcCC
Confidence 455799999999875 44445442 34221 367778899999999999999
Q ss_pred Cccceeee
Q 001359 245 DHFKKIQY 252 (1092)
Q Consensus 245 ~~~~~~~~ 252 (1092)
+||.|+..
T Consensus 332 ~~IRdVi~ 339 (345)
T 3a5y_A 332 ETLAEVIA 339 (345)
T ss_dssp SSGGGGSS
T ss_pred CcHheEec
Confidence 99999754
No 78
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}
Probab=21.69 E-value=24 Score=34.05 Aligned_cols=43 Identities=21% Similarity=0.411 Sum_probs=35.0
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCcccccccccceee
Q 001359 154 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIW 203 (1092)
Q Consensus 154 ~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgwevw 203 (1092)
-||+| +.|..-++.+|+++ .++-||+|+... ..+|--.||-+.
T Consensus 140 ~Kp~~----~~~~~~~~~~~~~~--~~~~~vgD~~~D-i~~a~~aG~~~~ 182 (200)
T 3cnh_A 140 MKPNP----AMYRLGLTLAQVRP--EEAVMVDDRLQN-VQAARAVGMHAV 182 (200)
T ss_dssp CTTCH----HHHHHHHHHHTCCG--GGEEEEESCHHH-HHHHHHTTCEEE
T ss_pred CCCCH----HHHHHHHHHcCCCH--HHeEEeCCCHHH-HHHHHHCCCEEE
Confidence 47876 57888899999876 579999999954 888888888754
No 79
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}
Probab=21.53 E-value=45 Score=33.36 Aligned_cols=44 Identities=30% Similarity=0.609 Sum_probs=36.5
Q ss_pred cCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCccccccccccee-ee
Q 001359 155 KPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI-WM 204 (1092)
Q Consensus 155 kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgwev-w~ 204 (1092)
||.| +.|..-++.+|+++ .++-+|+|..+|=..+|--.||-+ |+
T Consensus 150 Kp~~----~~~~~~~~~~g~~~--~~~i~iGD~~~~Di~~a~~aG~~~~~v 194 (241)
T 2hoq_A 150 KPHP----KIFKKALKAFNVKP--EEALMVGDRLYSDIYGAKRVGMKTVWF 194 (241)
T ss_dssp TTCH----HHHHHHHHHHTCCG--GGEEEEESCTTTTHHHHHHTTCEEEEE
T ss_pred CCCH----HHHHHHHHHcCCCc--ccEEEECCCchHhHHHHHHCCCEEEEE
Confidence 7776 56788899999976 579999999999899998888874 54
No 80
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2
Probab=21.29 E-value=27 Score=33.67 Aligned_cols=88 Identities=19% Similarity=0.292 Sum_probs=53.4
Q ss_pred HHhhhcCCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEE------EcCCCcchHHHHHHHHHhcCCCCCCCceeEe
Q 001359 111 TFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVI------LKPDPGNSQDLFIRSLSALGIDVTEHDIRFV 184 (1092)
Q Consensus 111 t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi------~kp~p~~~q~lyl~sl~~~gi~~~~hdirfv 184 (1092)
.+++.|....++++.+-.+.+..=.+.-+.-.-+..|+..-+. -||+| +.|..-++.+|+++ .++-||
T Consensus 98 ~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~Kp~~----~~~~~~~~~~~~~~--~~~~~v 171 (206)
T 2b0c_A 98 AIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEA----RIYQHVLQAEGFSP--SDTVFF 171 (206)
T ss_dssp HHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHHHHCSEEEEHHHHTCCTTCH----HHHHHHHHHHTCCG--GGEEEE
T ss_pred HHHHHHHHCCCeEEEEECCChHHHHHHHHhccChhhheeeEEEecccCCCCCCH----HHHHHHHHHcCCCH--HHeEEe
Confidence 4566666566788777544332211111110112333322221 37776 68888999999976 579999
Q ss_pred cCCCCCccccccccccee-eec
Q 001359 185 EDNWESPVLGAWGLGWEI-WMD 205 (1092)
Q Consensus 185 ed~we~p~lgawglgwev-w~~ 205 (1092)
.|+..+ ..+|-..||-+ |++
T Consensus 172 gD~~~D-i~~a~~aG~~~~~~~ 192 (206)
T 2b0c_A 172 DDNADN-IEGANQLGITSILVK 192 (206)
T ss_dssp ESCHHH-HHHHHTTTCEEEECC
T ss_pred CCCHHH-HHHHHHcCCeEEEec
Confidence 999764 88999999874 444
No 81
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=20.50 E-value=77 Score=36.05 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=40.5
Q ss_pred CCCcceEEeecCCCCCCCCCCCCCCccccceeeeE--EEEcCCC---cchHHHHHHHHHhcCC
Q 001359 117 GPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQ--VILKPDP---GNSQDLFIRSLSALGI 174 (1092)
Q Consensus 117 ~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~q--vi~kp~p---~~~q~lyl~sl~~~gi 174 (1092)
.+.|.+.+|++|+.|-.-..- -|..+++|.= ++-.++| ..+..+..+.|+.+|+
T Consensus 100 ~~~P~r~~y~g~vfR~e~~~~----gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~lgl 158 (400)
T 3od1_A 100 RAYPLRLAYQSNVYRAQQNEG----GKPAEFEQLGVELIGDGTASADGEVIALMIAALKRAGL 158 (400)
T ss_dssp SCSCEEEEEEEEEECCCC-------CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEEcCEEeCCCCCC----CCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHCCC
Confidence 578999999999999654333 3888999965 4666665 3467889999999997
No 82
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=20.36 E-value=26 Score=31.64 Aligned_cols=42 Identities=26% Similarity=0.318 Sum_probs=33.9
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCccccccccccee
Q 001359 154 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI 202 (1092)
Q Consensus 154 ~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgwev 202 (1092)
-||+| +.|..-++.+|+++ .++-||.|+..+ ..+|.-.||-.
T Consensus 73 ~Kp~~----~~~~~~~~~~~~~~--~~~~~vgD~~~d-i~~a~~~G~~~ 114 (137)
T 2pr7_A 73 EKPEE----AAFQAAADAIDLPM--RDCVLVDDSILN-VRGAVEAGLVG 114 (137)
T ss_dssp CTTSH----HHHHHHHHHTTCCG--GGEEEEESCHHH-HHHHHHHTCEE
T ss_pred CCCCH----HHHHHHHHHcCCCc--ccEEEEcCCHHH-HHHHHHCCCEE
Confidence 47776 47788889999876 579999999975 88898888863
No 83
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=20.10 E-value=35 Score=34.97 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=35.4
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCcccccccccceee
Q 001359 154 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIW 203 (1092)
Q Consensus 154 ~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgwevw 203 (1092)
-||+| +.|+..++.+|++| +++-||+|.. +=..||--.|+-++
T Consensus 169 ~KP~p----~~~~~a~~~lg~~p--~e~l~VGDs~-~Di~aA~~aG~~~i 211 (250)
T 4gib_A 169 NKPHP----EIFLMSAKGLNVNP--QNCIGIEDAS-AGIDAINSANMFSV 211 (250)
T ss_dssp CTTSS----HHHHHHHHHHTCCG--GGEEEEESSH-HHHHHHHHTTCEEE
T ss_pred CCCcH----HHHHHHHHHhCCCh--HHeEEECCCH-HHHHHHHHcCCEEE
Confidence 38988 68889999999977 6799999985 66788888887643
No 84
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=20.00 E-value=70 Score=36.95 Aligned_cols=78 Identities=10% Similarity=0.063 Sum_probs=49.1
Q ss_pred CceeeeccccccccccCCHHHHhhhcCCCcceEEeecCCCCCCCCCCCCCCccccceeee--EEEEcCCCcc-----hHH
Q 001359 91 GCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQF--QVILKPDPGN-----SQD 163 (1092)
Q Consensus 91 gc~~~~p~~~e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~--qvi~kp~p~~-----~q~ 163 (1092)
|..+.-.+|..++..-+--... .-.+.|.+.+|++|+.|-.-.. .-|..+|||. =+|--++|.. +..
T Consensus 93 g~~l~LRpd~T~~~aR~~~~~~--~~~~~p~r~~y~g~vfR~e~~~----~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~ 166 (465)
T 3net_A 93 SEARALKFDQTVPLAAYIARHL--NDLTFPFARYQMDVVFRGERAK----DGRFRQFRQCDIDVVGREKLSLLYDAQMPA 166 (465)
T ss_dssp -CCEEECSCSHHHHHHHHHHHG--GGSCSSEEEEECCEEECBC----------CCEEEEEEEEEECSSCCCHHHHHHHHH
T ss_pred CCEEEeCCCChHHHHHHHHhcc--cccCCCeEEEEeccEEecCCCC----CCCcceeEEeeEEEECCCCccchhhHHHHH
Confidence 4555555555544332211111 1246799999999998843221 2366789995 4677888876 788
Q ss_pred HHHHHHHhcCC
Q 001359 164 LFIRSLSALGI 174 (1092)
Q Consensus 164 lyl~sl~~~gi 174 (1092)
+..+.|+.+|+
T Consensus 167 l~~~~l~~lgl 177 (465)
T 3net_A 167 IITEIFEAVNI 177 (465)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHcCC
Confidence 99999999997
Done!