BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001361
(1092 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 176 bits (446), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 166/325 (51%), Gaps = 18/325 (5%)
Query: 307 VQNIACGGRHAALVTKQG-EVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACG 365
+ ++ CG H ++ G EV+SWG GRLGHG SD+ P I AL I ++ +ACG
Sbjct: 70 IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 129
Query: 366 EHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTA 425
+ H AVT+ G++ +WG N N G LG G+ +P+K+ EGI + V+ G HTA
Sbjct: 130 DSHCLAVTMEGEVQSWG-RNQN-GQLGLGDTEDSLVPQKIQ-AFEGIRIKMVAAGAEHTA 186
Query: 426 VVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVG 485
VT G L+ +G G +G LG GDR P V S G + ACG HT +V
Sbjct: 187 AVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV------ 240
Query: 486 XXXXXXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAALVEPNFCQVSCGHSLTVALTT 545
G L+T+ E L+P + AL Q+S G T+ALT+
Sbjct: 241 ------SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTS 294
Query: 546 TGHVYTMGSPVYGQLG-DPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTW 604
G +Y G +GQ+G + P +V + V+ ++CG H +T R V+ W
Sbjct: 295 DGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-VSCGWRHTLAVTERNNVFAW 353
Query: 605 GKGANGRLGHGDTDDRNFPSLVEAL 629
G+G NG+LG G++ DRNFP ++EAL
Sbjct: 354 GRGTNGQLGIGESVDRNFPKIIEAL 378
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 172/369 (46%), Gaps = 22/369 (5%)
Query: 310 IACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHT 369
I+ G H+ + V SWG G+LGHG D P + AL + V CG HT
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 80
Query: 370 CAVTLSG-DMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVT 428
A + SG ++Y+WG + FG LGHGN L+ P + L GI + ++CG H VT
Sbjct: 81 VAYSQSGMEVYSWGWGD--FGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 137
Query: 429 SAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGXXX 488
G++ ++G G LG GD P+++ + +G+R A G HTAAV E
Sbjct: 138 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------- 190
Query: 489 XXXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGH 548
G L+ W + RLVP V + V+CG T++++ +G
Sbjct: 191 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 245
Query: 549 VYTMGSPVYGQLGDPKANGKL-PTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKG 607
+YT G YGQLG L P ++E L+ +F+ +I+ G H LTS ++Y WG
Sbjct: 246 LYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGWRHTMALTSDGKLYGWGWN 304
Query: 608 ANGRLGHGDTDDRNFPSLVEALKDKQVKSIVCGTSFTAAIC----LHKWVSGVDQSMCSG 663
G++G G+ D+ P V D++V + CG T A+ + W G + + G
Sbjct: 305 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG 364
Query: 664 CRIPFNFKR 672
+ NF +
Sbjct: 365 ESVDRNFPK 373
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 129/274 (47%), Gaps = 15/274 (5%)
Query: 288 GVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSH 347
G D F P +++ + ++ IACG H VT +GEV SWG G+LG G D
Sbjct: 104 GNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV 163
Query: 348 PKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNG 407
P+ I A + I +++VA G HT AVT GD+Y WG +G LG G+ +P+++
Sbjct: 164 PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWG--RYGNLGLGDRTDRLVPERVT- 220
Query: 408 PLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTV 467
G +S V+CG HT V+ +G L+T+G +G LGHGD P ++++L
Sbjct: 221 STGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFIS 280
Query: 468 RAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAALVE 527
+ + G HT A+ GKL+ W + P V +
Sbjct: 281 QISGGWRHTMALTS------------DGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDD 328
Query: 528 PNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLG 561
QVSCG T+A+T +V+ G GQLG
Sbjct: 329 QKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 362
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 271 TGDG-ILGGGIHRSGSYA-GVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFS 328
T DG + G G ++ G G +D P V V ++CG RH VT++ VF+
Sbjct: 293 TSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFA 352
Query: 329 WGEELGGRLGHGVDSDVSHPKLIDAL 354
WG G+LG G D + PK+I+AL
Sbjct: 353 WGRGTNGQLGIGESVDRNFPKIIEAL 378
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 176 bits (446), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 166/325 (51%), Gaps = 18/325 (5%)
Query: 307 VQNIACGGRHAALVTKQG-EVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACG 365
+ ++ CG H ++ G EV+SWG GRLGHG SD+ P I AL I ++ +ACG
Sbjct: 58 IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 117
Query: 366 EHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTA 425
+ H AVT+ G++ +WG N N G LG G+ +P+K+ EGI + V+ G HTA
Sbjct: 118 DSHCLAVTMEGEVQSWG-RNQN-GQLGLGDTEDSLVPQKIQ-AFEGIRIKMVAAGAEHTA 174
Query: 426 VVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVG 485
VT G L+ +G G +G LG GDR P V S G + ACG HT +V
Sbjct: 175 AVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV------ 228
Query: 486 XXXXXXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAALVEPNFCQVSCGHSLTVALTT 545
G L+T+ E L+P + AL Q+S G T+ALT+
Sbjct: 229 ------SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTS 282
Query: 546 TGHVYTMGSPVYGQLG-DPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTW 604
G +Y G +GQ+G + P +V + V+ ++CG H +T R V+ W
Sbjct: 283 DGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-VSCGWRHTLAVTERNNVFAW 341
Query: 605 GKGANGRLGHGDTDDRNFPSLVEAL 629
G+G NG+LG G++ DRNFP ++EAL
Sbjct: 342 GRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 172/369 (46%), Gaps = 22/369 (5%)
Query: 310 IACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHT 369
I+ G H+ + V SWG G+LGHG D P + AL + V CG HT
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 370 CAVTLSG-DMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVT 428
A + SG ++Y+WG + FG LGHGN L+ P + L GI + ++CG H VT
Sbjct: 69 VAYSQSGMEVYSWGWGD--FGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 125
Query: 429 SAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGXXX 488
G++ ++G G LG GD P+++ + +G+R A G HTAAV E
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------- 178
Query: 489 XXXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGH 548
G L+ W + RLVP V + V+CG T++++ +G
Sbjct: 179 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233
Query: 549 VYTMGSPVYGQLGDPKANGKL-PTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKG 607
+YT G YGQLG L P ++E L+ +F+ +I+ G H LTS ++Y WG
Sbjct: 234 LYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGFRHTMALTSDGKLYGWGWN 292
Query: 608 ANGRLGHGDTDDRNFPSLVEALKDKQVKSIVCGTSFTAAIC----LHKWVSGVDQSMCSG 663
G++G G+ D+ P V D++V + CG T A+ + W G + + G
Sbjct: 293 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG 352
Query: 664 CRIPFNFKR 672
+ NF +
Sbjct: 353 ESVDRNFPK 361
Score = 127 bits (318), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 129/274 (47%), Gaps = 15/274 (5%)
Query: 288 GVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSH 347
G D F P +++ + ++ IACG H VT +GEV SWG G+LG G D
Sbjct: 92 GNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV 151
Query: 348 PKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNG 407
P+ I A + I +++VA G HT AVT GD+Y WG +G LG G+ +P+++
Sbjct: 152 PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWG--RYGNLGLGDRTDRLVPERVT- 208
Query: 408 PLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTV 467
G +S V+CG HT V+ +G L+T+G +G LGHGD P ++++L
Sbjct: 209 STGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFIS 268
Query: 468 RAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAALVE 527
+ + G HT A+ GKL+ W + P V +
Sbjct: 269 QISGGFRHTMALTS------------DGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDD 316
Query: 528 PNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLG 561
QVSCG T+A+T +V+ G GQLG
Sbjct: 317 QKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 271 TGDG-ILGGGIHRSGSYA-GVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFS 328
T DG + G G ++ G G +D P V V ++CG RH VT++ VF+
Sbjct: 281 TSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFA 340
Query: 329 WGEELGGRLGHGVDSDVSHPKLIDAL 354
WG G+LG G D + PK+I+AL
Sbjct: 341 WGRGTNGQLGIGESVDRNFPKIIEAL 366
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 176 bits (445), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 166/325 (51%), Gaps = 18/325 (5%)
Query: 307 VQNIACGGRHAALVTKQG-EVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACG 365
+ ++ CG H ++ G EV+SWG GRLGHG SD+ P I AL I ++ +ACG
Sbjct: 58 IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 117
Query: 366 EHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTA 425
+ H AVT+ G++ +WG N N G LG G+ +P+K+ EGI + V+ G HTA
Sbjct: 118 DSHCLAVTMEGEVQSWG-RNQN-GQLGLGDTEDSLVPQKIQ-AFEGIRIKMVAAGAEHTA 174
Query: 426 VVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVG 485
VT G L+ +G G +G LG GDR P V S G + ACG HT +V
Sbjct: 175 AVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV------ 228
Query: 486 XXXXXXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAALVEPNFCQVSCGHSLTVALTT 545
G L+T+ E L+P + AL Q+S G T+ALT+
Sbjct: 229 ------SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTS 282
Query: 546 TGHVYTMGSPVYGQLG-DPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTW 604
G +Y G +GQ+G + P +V + V+ ++CG H +T R V+ W
Sbjct: 283 DGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-VSCGWRHTLAVTERNNVFAW 341
Query: 605 GKGANGRLGHGDTDDRNFPSLVEAL 629
G+G NG+LG G++ DRNFP ++EAL
Sbjct: 342 GRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 172/369 (46%), Gaps = 22/369 (5%)
Query: 310 IACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHT 369
I+ G H+ + V SWG G+LGHG D P + AL + V CG HT
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 370 CAVTLSG-DMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVT 428
A + SG ++Y+WG + FG LGHGN L+ P + L GI + ++CG H VT
Sbjct: 69 VAYSQSGMEVYSWGWGD--FGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 125
Query: 429 SAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGXXX 488
G++ ++G G LG GD P+++ + +G+R A G HTAAV E
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------- 178
Query: 489 XXXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGH 548
G L+ W + RLVP V + V+CG T++++ +G
Sbjct: 179 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233
Query: 549 VYTMGSPVYGQLGDPKANGKL-PTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKG 607
+YT G YGQLG L P ++E L+ +F+ +I+ G H LTS ++Y WG
Sbjct: 234 LYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGWRHTMALTSDGKLYGWGWN 292
Query: 608 ANGRLGHGDTDDRNFPSLVEALKDKQVKSIVCGTSFTAAIC----LHKWVSGVDQSMCSG 663
G++G G+ D+ P V D++V + CG T A+ + W G + + G
Sbjct: 293 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG 352
Query: 664 CRIPFNFKR 672
+ NF +
Sbjct: 353 ESVDRNFPK 361
Score = 126 bits (317), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 129/274 (47%), Gaps = 15/274 (5%)
Query: 288 GVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSH 347
G D F P +++ + ++ IACG H VT +GEV SWG G+LG G D
Sbjct: 92 GNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV 151
Query: 348 PKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNG 407
P+ I A + I +++VA G HT AVT GD+Y WG +G LG G+ +P+++
Sbjct: 152 PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWG--RYGNLGLGDRTDRLVPERVT- 208
Query: 408 PLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTV 467
G +S V+CG HT V+ +G L+T+G +G LGHGD P ++++L
Sbjct: 209 STGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFIS 268
Query: 468 RAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAALVE 527
+ + G HT A+ GKL+ W + P V +
Sbjct: 269 QISGGWRHTMALTS------------DGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDD 316
Query: 528 PNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLG 561
QVSCG T+A+T +V+ G GQLG
Sbjct: 317 QKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 271 TGDG-ILGGGIHRSGSYA-GVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFS 328
T DG + G G ++ G G +D P V V ++CG RH VT++ VF+
Sbjct: 281 TSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFA 340
Query: 329 WGEELGGRLGHGVDSDVSHPKLIDAL 354
WG G+LG G D + PK+I+AL
Sbjct: 341 WGRGTNGQLGIGESVDRNFPKIIEAL 366
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 173 bits (438), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 164/325 (50%), Gaps = 18/325 (5%)
Query: 307 VQNIACGGRHAALVTKQG-EVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACG 365
+ ++ CG H ++ G EV+SWG GRLGHG SD+ P I AL I ++ +ACG
Sbjct: 60 IVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 119
Query: 366 EHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTA 425
+ H AVT G++ +WG N N G LG G+ +P+K+ EGI + V+ G HTA
Sbjct: 120 DSHCLAVTXEGEVQSWG-RNQN-GQLGLGDTEDSLVPQKIQ-AFEGIRIKXVAAGAEHTA 176
Query: 426 VVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVG 485
VT G L+ +G G +G LG GDR P V S G + ACG HT +V
Sbjct: 177 AVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISV------ 230
Query: 486 XXXXXXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAALVEPNFCQVSCGHSLTVALTT 545
G L+T+ E L+P + AL Q+S G T ALT+
Sbjct: 231 ------SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTS 284
Query: 546 TGHVYTMGSPVYGQLG-DPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTW 604
G +Y G +GQ+G + P +V + V+ ++CG H +T R V+ W
Sbjct: 285 DGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-VSCGWRHTLAVTERNNVFAW 343
Query: 605 GKGANGRLGHGDTDDRNFPSLVEAL 629
G+G NG+LG G++ DRNFP ++EAL
Sbjct: 344 GRGTNGQLGIGESVDRNFPKIIEAL 368
Score = 160 bits (405), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 172/369 (46%), Gaps = 22/369 (5%)
Query: 310 IACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHT 369
I+ G H+ + V SWG G+LGHG D P + AL + V CG HT
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 70
Query: 370 CAVTLSG-DMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVT 428
A + SG ++Y+WG + FG LGHGN L+ P + L GI + ++CG H VT
Sbjct: 71 VAYSQSGXEVYSWGWGD--FGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 127
Query: 429 SAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGXXX 488
G++ ++G G LG GD P+++ + +G+R A G HTAAV E
Sbjct: 128 XEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTE------- 180
Query: 489 XXXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGH 548
G L+ W + RLVP V + V+CG T++++ +G
Sbjct: 181 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGA 235
Query: 549 VYTMGSPVYGQLGDPKANGKL-PTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKG 607
+YT G YGQLG L P ++E L+ +F+ +I+ G H LTS ++Y WG
Sbjct: 236 LYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGARHTXALTSDGKLYGWGWN 294
Query: 608 ANGRLGHGDTDDRNFPSLVEALKDKQVKSIVCGTSFTAAIC----LHKWVSGVDQSMCSG 663
G++G G+ D+ P V D++V + CG T A+ + W G + + G
Sbjct: 295 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG 354
Query: 664 CRIPFNFKR 672
+ NF +
Sbjct: 355 ESVDRNFPK 363
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 127/274 (46%), Gaps = 15/274 (5%)
Query: 288 GVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSH 347
G D F P +++ + ++ IACG H VT +GEV SWG G+LG G D
Sbjct: 94 GNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLV 153
Query: 348 PKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNG 407
P+ I A + I ++ VA G HT AVT GD+Y WG +G LG G+ +P+++
Sbjct: 154 PQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWG--RYGNLGLGDRTDRLVPERVT- 210
Query: 408 PLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTV 467
G S V+CG HT V+ +G L+T+G +G LGHGD P ++++L
Sbjct: 211 STGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFIS 270
Query: 468 RAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAALVE 527
+ + G HT A+ GKL+ W + P V +
Sbjct: 271 QISGGARHTXALTS------------DGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDD 318
Query: 528 PNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLG 561
QVSCG T+A+T +V+ G GQLG
Sbjct: 319 QKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 352
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 271 TGDGIL-GGGIHRSGSYA-GVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFS 328
T DG L G G ++ G G +D P V V ++CG RH VT++ VF+
Sbjct: 283 TSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFA 342
Query: 329 WGEELGGRLGHGVDSDVSHPKLIDAL 354
WG G+LG G D + PK+I+AL
Sbjct: 343 WGRGTNGQLGIGESVDRNFPKIIEAL 368
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 179/376 (47%), Gaps = 18/376 (4%)
Query: 275 ILGGGIHRSGSYAGVKMDSF-VPKAVESAVVLDVQNIACGGRHAALVTKQGEVFSWGEEL 333
I G G + G G++ VP E+ L + G + VT G++++ G
Sbjct: 22 IYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGA 81
Query: 334 GGRLGHGVDSDVSHPKLIDALKNINVELVAC--GEHHTCAVTLSGDMYTWGGSNCNFGLL 391
GGRLG G VS P L+++++++ ++ VA G H A++ G++Y+WG G L
Sbjct: 82 GGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG--EAEDGKL 139
Query: 392 GHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRIS 451
GHGN P+ + L GI V V+ G H+A VT+AG L+T+G G +G LGH D
Sbjct: 140 GHGNRSPCDRPRVIE-SLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSED 198
Query: 452 VSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWXXXXXXXXXXX 511
P+ V++L+G R V ACG + +++W
Sbjct: 199 QLKPKLVEALQGHRVVDIACGSGDAQTLC----------LTDDDTVWSWGDGDYGKLGRG 248
Query: 512 XKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANG-KLP 570
+ VP + +L +V CG +VALT +G VYT G Y +LG + + P
Sbjct: 249 GSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRP 308
Query: 571 TRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNFPSLVEALK 630
+V+G K + IA G H T EVYTWG G+LG G T+ P LV AL+
Sbjct: 309 RQVQGLQGKKVIA-IATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQ 367
Query: 631 DKQVKSIVCGTSFTAA 646
K+V + CG++ T A
Sbjct: 368 GKKVNRVACGSAHTLA 383
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 134/283 (47%), Gaps = 23/283 (8%)
Query: 264 VFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQ 323
V+ WGE DG LG G + P+ +ES ++V ++A GG H+A VT
Sbjct: 128 VYSWGEAE-DGKLG---------HGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAA 177
Query: 324 GEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGG 383
G++++WG+ GRLGH D PKL++AL+ V +ACG + L+ D W
Sbjct: 178 GDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSW 237
Query: 384 SNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGV 443
+ ++G LG G +P K++ L G+ V V CG + +T +G ++T+G G +
Sbjct: 238 GDGDYGKLGRGGSDGCKVPMKID-SLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHR 296
Query: 444 LGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWXXX 503
LGHG V PR+V L+G + + A G H E G+++TW
Sbjct: 297 LGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTE------------DGEVYTWGDN 344
Query: 504 XXXXXXXXXKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTT 546
A P VAAL +V+CG + T+A +T+
Sbjct: 345 DEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWSTS 387
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 153/334 (45%), Gaps = 23/334 (6%)
Query: 314 GRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNIN-VELVACGEHHTCAV 372
GR G ++ WG G+LG + V P +AL + V+L+ GE AV
Sbjct: 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG-GEQTLFAV 68
Query: 373 TLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVS--SVSCGPWHTAVVTSA 430
T G +Y G +G +S P L ++ + + +V+ G H ++S
Sbjct: 69 TADGKLYATGYGAGGRLGIGGTESVST--PTLLE-SIQHVFIKKVAVNSGGKHCLALSSE 125
Query: 431 GQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGXXXXX 490
G+++++G+ G LGHG+R PR ++SL+G+ V A G H+A V
Sbjct: 126 GEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVT---------- 175
Query: 491 XXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAALVEPNFCQVSCG--HSLTVALTTTGH 548
G L+TW E +L P V AL ++CG + T+ LT
Sbjct: 176 --AAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDT 233
Query: 549 VYTMGSPVYGQLGDPKANG-KLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKG 607
V++ G YG+LG ++G K+P +++ LT V ++ CG LT VYTWGKG
Sbjct: 234 VWSWGDGDYGKLGRGGSDGCKVPMKID-SLTGLGVVKVECGSQFSVALTKSGAVYTWGKG 292
Query: 608 ANGRLGHGDTDDRNFPSLVEALKDKQVKSIVCGT 641
RLGHG D P V+ L+ K+V +I G+
Sbjct: 293 DYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS 326
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 108/253 (42%), Gaps = 24/253 (9%)
Query: 430 AGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGXXXX 489
+G ++ +G G LG + V P ++L LR V+ G AV
Sbjct: 19 SGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT--------- 69
Query: 490 XXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAAL--VEPNFCQVSCGHSLTVALTTTG 547
GKL+ E+ PT + ++ V V+ G +AL++ G
Sbjct: 70 ---ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEG 126
Query: 548 HVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKG 607
VY+ G G+LG + RV L V ++A G H A +T+ ++YTWGKG
Sbjct: 127 EVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKG 186
Query: 608 ANGRLGHGDTDDRNFPSLVEALKDKQVKSIVCGTSFTAAICLH------KWVSG----VD 657
GRLGH D++D+ P LVEAL+ +V I CG+ +CL W G +
Sbjct: 187 RYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLG 246
Query: 658 QSMCSGCRIPFNF 670
+ GC++P
Sbjct: 247 RGGSDGCKVPMKI 259
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 101/225 (44%), Gaps = 16/225 (7%)
Query: 427 VTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKG--LRTVRAACGVWHTAAVVEVMV 484
VT+ G+L+ G G G LG G SVSTP ++S++ ++ V G H A+
Sbjct: 68 VTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLAL----- 122
Query: 485 GXXXXXXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAALVEPNFCQVSCGHSLTVALT 544
G++++W + P + +L V+ G + + +T
Sbjct: 123 -------SSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVT 175
Query: 545 TTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACG--DYHVAVLTSRTEVY 602
G +YT G YG+LG + +L ++ L + V +IACG D LT V+
Sbjct: 176 AAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVW 235
Query: 603 TWGKGANGRLGHGDTDDRNFPSLVEALKDKQVKSIVCGTSFTAAI 647
+WG G G+LG G +D P +++L V + CG+ F+ A+
Sbjct: 236 SWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVAL 280
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 145/339 (42%), Gaps = 32/339 (9%)
Query: 302 AVVLDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSH--PKLIDALKNINV 359
A + D +I+ GG H ++TK G+++S+G G LG D S P LID
Sbjct: 72 AGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPG--KA 129
Query: 360 ELVACGEHHTCAVTLSGDMYTWGG---SNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSS 416
++ G+ H+ + G ++ WG S+ N GL GN+ + P L +EG S
Sbjct: 130 LCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRT---PIDL---MEGTVCCS 183
Query: 417 VSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVS-----TPREVDSLKGLRTVRAAC 471
++ G H ++T+AG++FT G G LG S+S R++ L RA
Sbjct: 184 IASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKP 243
Query: 472 --GVWHTAAVVEVMVGXXXXXXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAALVEPN 529
+W T + F KE L P +
Sbjct: 244 FEAIWATNYCTFMRESQTQVIWATGLNNF-----KQLAHETKGKEFALTPIKTEL---KD 295
Query: 530 FCQVSCGHSLTVALTTTGHVYTMGSPVYGQ--LGDPKANGKLPTRVEGKLTKNFVEEIAC 587
++ G TV LTT +G P YG+ LGD K + PT V+ KLT+ V + C
Sbjct: 296 IRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVK-KLTEKIV-SVGC 353
Query: 588 GDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNFPSLV 626
G+ +T ++Y+WG G N +LG GD DD P +V
Sbjct: 354 GEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVV 392
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 89/359 (24%), Positives = 145/359 (40%), Gaps = 33/359 (9%)
Query: 321 TKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNI-NVELVACGEHHTCAVTLSGDMY 379
T G V G G+LG G D+ K + + I + ++ G H +T SGD+Y
Sbjct: 40 TVLGNVLVCGNGDVGQLGLG--EDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIY 97
Query: 380 TWGGSNCNF-GLLGH--GNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTF 436
++G CN G LG + S P ++ P + + +S G H+A + G++F +
Sbjct: 98 SFG---CNDEGALGRDTSEDGSESKPDLIDLPGKAL---CISAGDSHSACLLEDGRVFAW 151
Query: 437 GD-----GTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGXXXXXX 491
G G G+ G++ TP +D ++G A G H V+ G
Sbjct: 152 GSFRDSHGNMGLTIDGNK---RTP--IDLMEGTVCCSIASGADHL--VILTTAGKVFTVG 204
Query: 492 -XXXGKLFTWXXXXXXXXXXXXKEARLVPT-CVAALVEPNFCQVSCGHSLTVALTTTGHV 549
G+L K L PT + +P + + + + T +
Sbjct: 205 CAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVI 264
Query: 550 YTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGAN 609
+ G + QL + GK K + IA G +H +LT+ + G+
Sbjct: 265 WATGLNNFKQLAH-ETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEY 323
Query: 610 GRLGHGDTDD-RNFPSLVEALKDKQVKSIVCGTSFTAAIC----LHKWVSGVDQSMCSG 663
GRLG GD D P++V+ L +K V S+ CG + A+ L+ W SGV+ + G
Sbjct: 324 GRLGLGDVKDVVEKPTIVKKLTEKIV-SVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVG 381
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 306 DVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHG-VDSDVSHPKLIDALKNINVELVAC 364
D+++IA G H ++T + G GRLG G V V P ++ L V V C
Sbjct: 295 DIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVS-VGC 353
Query: 365 GEHHTCAVTLSGDMYTWG-GSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWH 423
GE + AVT+ G +Y+WG G N G +G G++ LE I V S + H
Sbjct: 354 GEVCSYAVTIDGKLYSWGSGVNNQLG-VGDGDD-----------ELEPIVVVSKNTQGKH 401
Query: 424 TAVVTSAGQLFTF 436
+ + GQ F
Sbjct: 402 MLLASGGGQHAIF 414
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 135/353 (38%), Gaps = 56/353 (15%)
Query: 270 CTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFSW 329
C +G LG GS + + KA+ I+ G H+A + + G VF+W
Sbjct: 101 CNDEGALGRDTSEDGSESKPDLIDLPGKAL---------CISAGDSHSACLLEDGRVFAW 151
Query: 330 G--EELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCN 387
G + G +G +D + P ID ++ +A G H +T +G ++T G +
Sbjct: 152 GSFRDSHGNMGLTIDGNKRTP--IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCA--E 207
Query: 388 FGLLGHGNEMS-----------LWLPKKL----NGPLEGIHVSSVSCGPWHTAVVTSAGQ 432
G LG +E S L P +L P E I ++ + T + S Q
Sbjct: 208 QGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN-----YCTFMRESQTQ 262
Query: 433 -LFTFGDGTFGVLGH---GDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGXXX 488
++ G F L H G ++ TP + + L+ +R G H ++ +
Sbjct: 263 VIWATGLNNFKQLAHETKGKEFAL-TPIKTE----LKDIRHIAGGQHHTVILTTDLKCSV 317
Query: 489 XXXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGH 548
G+L K+ PT V L E V CG + A+T G
Sbjct: 318 VGRPEYGRL----------GLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGK 366
Query: 549 VYTMGSPVYGQLGDPKANGKL-PTRVEGKLTKNFVEEIACGDYHVAVLTSRTE 600
+Y+ GS V QLG + +L P V K T+ +A G A+ + +
Sbjct: 367 LYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKAD 419
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 154/373 (41%), Gaps = 49/373 (13%)
Query: 306 DVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNIN--VELVA 363
DV GG H ++K G+V+S+G G LG D+ V +++ + V V+
Sbjct: 60 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR--DTSVEGSEMVPGKVELQEKVVQVS 117
Query: 364 CGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLE---GIHVSSVSCG 420
G+ HT A+T G ++ WG N G++G M KK P++ + V V+ G
Sbjct: 118 AGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPM-----KKSMVPVQVQLDVPVVKVASG 172
Query: 421 PWHTAVVTSAGQLFTFGDGTFGVLG--------HGDRISVS---TPREV-----DSLKGL 464
H ++T+ G L+T G G G LG G R + P+ V S +
Sbjct: 173 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHV 232
Query: 465 RTVRAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAA 524
R A CG + T A+ G ++ + E+ +P + +
Sbjct: 233 RFQDAFCGAYFTFAI------------SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS 280
Query: 525 LVEP--NFCQVSCGHSLTVALTTTGHVYTMGSPVYGQ--LGDPKANGKLPTRVEGKLTKN 580
++ S G TV + + G Y++G YG+ LG+ +PT + +L
Sbjct: 281 FKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS-RLPA- 338
Query: 581 FVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNFP--SLVEALKDKQVKSIV 638
V +ACG +T V+ WG G N +LG G +D P + + L+++ V S+
Sbjct: 339 -VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVS 397
Query: 639 CGTSFTAAICLHK 651
G T + K
Sbjct: 398 SGGQHTVLLVKDK 410
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 105/267 (39%), Gaps = 41/267 (15%)
Query: 387 NFGLLGHG-NEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLG 445
+ G LG G N M P ++ P + V G HT ++ +GQ+++FG G LG
Sbjct: 36 DVGQLGLGENVMERKKPALVSIPED---VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALG 92
Query: 446 HGDRISVS--TPREVDSLKGLRTVRAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWXXX 503
+ S P +V+ + + V+ + G HTAA+ + G++F W
Sbjct: 93 RDTSVEGSEMVPGKVELQE--KVVQVSAGDSHTAALTD------------DGRVFLWGSF 138
Query: 504 XXXXXXXXXKE---ARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQL 560
E +VP V ++ +V+ G+ V LT G +YT+G GQL
Sbjct: 139 RDNNGVIGLLEPMKKSMVP--VQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL 196
Query: 561 G---DPKANGKLPTRVEGKLTKNFV-------------EEIACGDYHVAVLTSRTEVYTW 604
G + AN +E L V ++ CG Y ++ VY +
Sbjct: 197 GRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGF 256
Query: 605 GKGANGRLGHGDTDDRNFPSLVEALKD 631
G +LG T+ P + + K+
Sbjct: 257 GLSNYHQLGTPGTESCFIPQNLTSFKN 283
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 154/373 (41%), Gaps = 49/373 (13%)
Query: 306 DVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNIN--VELVA 363
DV GG H ++K G+V+S+G G LG D+ V +++ + V V+
Sbjct: 49 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR--DTSVEGSEMVPGKVELQEKVVQVS 106
Query: 364 CGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLE---GIHVSSVSCG 420
G+ HT A+T G ++ WG N G++G M KK P++ + V V+ G
Sbjct: 107 AGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPM-----KKSMVPVQVQLDVPVVKVASG 161
Query: 421 PWHTAVVTSAGQLFTFGDGTFGVLG--------HGDRISVS---TPREV-----DSLKGL 464
H ++T+ G L+T G G G LG G R + P+ V S +
Sbjct: 162 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHV 221
Query: 465 RTVRAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWXXXXXXXXXXXXKEARLVPTCVAA 524
R A CG + T A+ G ++ + E+ +P + +
Sbjct: 222 RFQDAFCGAYFTFAI------------SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS 269
Query: 525 LVEP--NFCQVSCGHSLTVALTTTGHVYTMGSPVYGQ--LGDPKANGKLPTRVEGKLTKN 580
++ S G TV + + G Y++G YG+ LG+ +PT + +L
Sbjct: 270 FKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS-RLPA- 327
Query: 581 FVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNFP--SLVEALKDKQVKSIV 638
V +ACG +T V+ WG G N +LG G +D P + + L+++ V S+
Sbjct: 328 -VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVS 386
Query: 639 CGTSFTAAICLHK 651
G T + K
Sbjct: 387 SGGQHTVLLVKDK 399
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 105/267 (39%), Gaps = 41/267 (15%)
Query: 387 NFGLLGHG-NEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLG 445
+ G LG G N M P ++ P + V G HT ++ +GQ+++FG G LG
Sbjct: 25 DVGQLGLGENVMERKKPALVSIPED---VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALG 81
Query: 446 HGDRISVS--TPREVDSLKGLRTVRAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWXXX 503
+ S P +V+ + + V+ + G HTAA+ + G++F W
Sbjct: 82 RDTSVEGSEMVPGKVELQE--KVVQVSAGDSHTAALTD------------DGRVFLWGSF 127
Query: 504 XXXXXXXXXKE---ARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQL 560
E +VP V ++ +V+ G+ V LT G +YT+G GQL
Sbjct: 128 RDNNGVIGLLEPMKKSMVP--VQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL 185
Query: 561 G---DPKANGKLPTRVEGKLTKNFV-------------EEIACGDYHVAVLTSRTEVYTW 604
G + AN +E L V ++ CG Y ++ VY +
Sbjct: 186 GRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGF 245
Query: 605 GKGANGRLGHGDTDDRNFPSLVEALKD 631
G +LG T+ P + + K+
Sbjct: 246 GLSNYHQLGTPGTESCFIPQNLTSFKN 272
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 94/443 (21%), Positives = 168/443 (37%), Gaps = 87/443 (19%)
Query: 264 VFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQ 323
+F WG + + G + ++ +++ F+P+ E+ ++ + A GG H + ++
Sbjct: 31 IFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRD-EAKII----SFAVGGMHTLALDEE 85
Query: 324 GEVFSWGEELGGRLGHGVDS--------------------------------DVSHPKLI 351
V+SWG G LG + S P L
Sbjct: 86 SNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLA 145
Query: 352 DALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGP-LE 410
+ K + + A ++ +CA+ +G++Y WG CN G+LG + P
Sbjct: 146 EGHKVVQL---AATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFS 202
Query: 411 GIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHG--DRISVST--PREVDSLKGLRT 466
++ ++ G H + G +F +G+G LG +R + T PR GLR
Sbjct: 203 KYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF----GLRH 258
Query: 467 VR-AACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWXXXXXXX--XXXXXKEARLV--PTC 521
V+ A G H A+ + KL +W ++ LV P
Sbjct: 259 VKYIASGENHCFALTK------------DNKLVSWGLNQFGQCGVSEDVEDGALVTKPKR 306
Query: 522 VAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKAN----------GK--- 568
+A ++ G ++ L+ G +Y+ G ++G PK N GK
Sbjct: 307 LALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARA 366
Query: 569 --LPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGD-TDDRNFPSL 625
LPT++ F + +A G +H + Y+WG G +G G DD P+
Sbjct: 367 VPLPTKLNN--VPKF-KSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTR 423
Query: 626 VE--ALKDKQVKSIVCGTSFTAA 646
++ A +D + + CG F+ +
Sbjct: 424 IKNTATQDHNIILVGCGGQFSVS 446
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve
Domain-Containing Protein 12
Length = 89
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 650 HKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVC 709
H W+ + + C C F+ R++H+C NCG ++C+TCSS + P+ KP RVC
Sbjct: 18 HAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELA----LPSYPKPVRVC 73
Query: 710 DNCFGKL 716
D+C L
Sbjct: 74 DSCHTLL 80
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing
Protein
Length = 82
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 650 HKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVC 709
H W+ + + C C F+ R++H+C NCG ++C+TCSS + P+ KP RVC
Sbjct: 11 HAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELA----LPSYPKPVRVC 66
Query: 710 DNCFGKLTK 718
D+C L +
Sbjct: 67 DSCHTLLLQ 75
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
Length = 125
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 651 KWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCD 710
KW + C C F+ +RH+C CG ++C CS+K ++ P+ KP RVCD
Sbjct: 62 KWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN----ALTPSSKKPVRVCD 117
Query: 711 NCFGKL 716
CF L
Sbjct: 118 ACFNDL 123
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Query: 657 DQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNP----NKPYRVCDNC 712
D +C CR+ F F ++H+C NCG V+C C++K+ P P K RVCD C
Sbjct: 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ------CPLPKYGIEKEVRVCDGC 213
Query: 713 FGKLTK 718
F L +
Sbjct: 214 FAALQR 219
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 656 VDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGK 715
VD C CR+ F ++H+C CG ++C CSSK S K RVC+ C+ +
Sbjct: 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFG--IEKEVRVCEPCYEQ 219
Query: 716 LTKATE 721
L + E
Sbjct: 220 LNRKAE 225
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With
Inositol 1,3-Bisphosphate
pdb|1HYJ|A Chain A, Solution Structure Of The Eea1 Fyve Domain
Length = 65
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 651 KWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCD 710
KW + C C F+ +RH+C CG ++C CS+K ++ P+ KP RVCD
Sbjct: 2 KWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN----ALTPSSKKPVRVCD 57
Query: 711 NCFGKL 716
CF L
Sbjct: 58 ACFNDL 63
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 661 CSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTK 718
C C F+ +RH+C+ CG + C CS K + ++ +VCD CFG+L K
Sbjct: 378 CXNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYL---KDRXAKVCDGCFGELKK 432
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16)
At 1.1a Resolution
Length = 90
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 652 WVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDN 711
WV + C C++ F F ++RH+C CG V+C C ++K + K RVC
Sbjct: 14 WVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYL----EKEARVCVV 69
Query: 712 CFGKLTKA 719
C+ ++KA
Sbjct: 70 CYETISKA 77
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of
Vps27p Protein From Saccharomyces Cerevisiae
Length = 73
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 656 VDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPN----KPYRVCDN 711
+D C C F+ ++H+C +CG V+C SS P P+ +P RVCD+
Sbjct: 9 IDSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS------IPLPDLGIYEPVRVCDS 62
Query: 712 CF 713
CF
Sbjct: 63 CF 64
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve
Domain From Leishmania Major
Length = 84
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 652 WVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDN 711
W D C+GC F +RH+C NCG V C CS ++ A +P RVCD
Sbjct: 15 WQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRA--AIPMRGITEPERVCDA 72
Query: 712 CF 713
C+
Sbjct: 73 CY 74
>pdb|1MAI|A Chain A, Structure Of The Pleckstrin Homology Domain From
Phospholipase C Delta In Complex With Inositol
Trisphosphate
Length = 131
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 19 ITALKKGAHLLKYGRRGKPKFCPFRLANDESILIW------ISGKEEKHLKLSHVSRIIP 72
+ AL KG+ LLK + ++L D IW + E + + + +
Sbjct: 10 LQALLKGSQLLKVKSSSWRRERFYKLQEDCKT-IWQESRKVMRSPESQLFSIEDIQEVRM 68
Query: 73 GQRTPIFQRYPRPEKEYQSFSLIYNDR--SLDLICKDKDEAEVWFTGLKALISRS 125
G RT +++ R E + FS+++ D+ +LDLI +A+ W GL+ +I S
Sbjct: 69 GHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKIIHHS 123
>pdb|1X4U|A Chain A, Solution Structure Of The Fyve Domain From Human Fyve
Domain Containing 27 Isoform B Protein
Length = 84
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 661 CSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYR----VCDNCFGKL 716
C+GC F+ +KR +C NCG +C C S K K+SM + R VC +C L
Sbjct: 17 CTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTL 76
Query: 717 TKA 719
+K+
Sbjct: 77 SKS 79
>pdb|1WFK|A Chain A, Fyve Domain Of Fyve Domain Containing 19 Protein From Mus
Musculus
Length = 88
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 658 QSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLT 717
+S C GC + F +K + C NCG +C+ C S A + N +VC C LT
Sbjct: 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGC---LSFSALVPRAGNTQQKVCKQCHTILT 65
Query: 718 KAT 720
+ +
Sbjct: 66 RGS 68
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 18/93 (19%)
Query: 292 DSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLI 351
++ VP +S V + GG L K G+V WG L G+L +
Sbjct: 15 EATVPAEAQSGV-----DAIAGGYFHGLALKGGKVLGWGANLNGQL------------TM 57
Query: 352 DALKNINVELVACGEHHTCAVTLSGDMYTWGGS 384
A V+ +A G +H+ A+ G++ WGG+
Sbjct: 58 PAATQSGVDAIAAGNYHSLALK-DGEVIAWGGN 89
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 18/93 (19%)
Query: 292 DSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLI 351
++ VP +S V + GG L K G+V WG L G+L +
Sbjct: 17 EATVPAEAQSGV-----DAIAGGYFHGLALKGGKVLGWGANLNGQL------------TM 59
Query: 352 DALKNINVELVACGEHHTCAVTLSGDMYTWGGS 384
A V+ +A G +H+ A+ G++ WGG+
Sbjct: 60 PAATQSGVDAIAAGNYHSLALK-DGEVIAWGGN 91
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 537 HSLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAV 594
H AL H T+ + QLG+ KA+G L + K+ NF E I C H+ +
Sbjct: 61 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL--KVLGNFDEAIVCCQRHLDI 116
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 537 HSLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAV 594
H AL H T+ + QLG+ KA+G L + K+ NF E I C H+ +
Sbjct: 57 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL--KVLGNFDEAIVCCQRHLDI 112
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 537 HSLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAV 594
H AL H T+ + QLG+ KA+G L + K+ NF E I C H+ +
Sbjct: 59 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL--KVLGNFDEAIVCCQRHLDI 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,927,417
Number of Sequences: 62578
Number of extensions: 1179097
Number of successful extensions: 2852
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2611
Number of HSP's gapped (non-prelim): 79
length of query: 1092
length of database: 14,973,337
effective HSP length: 109
effective length of query: 983
effective length of database: 8,152,335
effective search space: 8013745305
effective search space used: 8013745305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)