Query 001361
Match_columns 1092
No_of_seqs 800 out of 3066
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 22:50:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 9E-46 1.9E-50 415.6 29.9 364 256-649 62-464 (476)
2 KOG1427 Uncharacterized conser 100.0 1.8E-40 3.9E-45 349.4 20.8 362 259-650 17-399 (443)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 3.5E-39 7.6E-44 362.6 26.3 317 314-649 58-409 (476)
4 KOG1427 Uncharacterized conser 100.0 1.5E-35 3.2E-40 312.4 16.3 309 256-598 71-399 (443)
5 PF08381 BRX: Transcription fa 100.0 2.4E-31 5.3E-36 218.1 7.2 59 1016-1074 1-59 (59)
6 KOG0783 Uncharacterized conser 99.9 4E-26 8.7E-31 265.4 16.3 305 256-599 136-450 (1267)
7 KOG0783 Uncharacterized conser 99.9 2.4E-25 5.2E-30 259.0 14.7 270 319-608 137-417 (1267)
8 KOG1428 Inhibitor of type V ad 99.9 3.9E-20 8.4E-25 220.9 23.9 344 259-646 495-891 (3738)
9 cd01248 PH_PLC Phospholipase C 99.8 5.1E-20 1.1E-24 178.7 9.8 104 18-121 2-115 (115)
10 KOG1428 Inhibitor of type V ad 99.8 9.9E-19 2.2E-23 209.1 19.9 250 304-575 568-870 (3738)
11 PF12814 Mcp5_PH: Meiotic cell 99.7 9.7E-17 2.1E-21 157.4 12.9 106 15-123 2-122 (123)
12 PF13713 BRX_N: Transcription 99.4 2.9E-13 6.3E-18 102.9 3.1 37 905-942 1-37 (39)
13 KOG0169 Phosphoinositide-speci 99.3 3.7E-13 8E-18 160.4 -1.2 137 14-168 9-150 (746)
14 PF01363 FYVE: FYVE zinc finge 99.2 5.4E-12 1.2E-16 111.2 1.2 67 651-717 2-68 (69)
15 KOG1818 Membrane trafficking a 99.1 1.1E-10 2.5E-15 138.3 8.6 70 648-722 158-227 (634)
16 PF00415 RCC1: Regulator of ch 99.1 8.4E-11 1.8E-15 97.0 3.9 50 598-647 1-51 (51)
17 KOG0941 E3 ubiquitin protein l 99.1 1.7E-12 3.7E-17 155.4 -10.1 188 295-547 4-197 (850)
18 smart00064 FYVE Protein presen 99.0 1.3E-10 2.8E-15 102.1 3.1 66 650-717 2-67 (68)
19 KOG1264 Phospholipase C [Lipid 99.0 9.6E-11 2.1E-15 138.0 0.3 118 8-125 7-133 (1267)
20 PF00415 RCC1: Regulator of ch 98.9 1.1E-09 2.4E-14 90.3 5.0 50 323-372 1-51 (51)
21 KOG1729 FYVE finger containing 98.9 4E-10 8.7E-15 124.4 0.5 68 648-718 158-226 (288)
22 KOG1819 FYVE finger-containing 98.8 9.3E-10 2E-14 123.6 1.8 72 643-716 886-962 (990)
23 PTZ00303 phosphatidylinositol 98.8 2E-09 4.3E-14 126.3 3.3 70 648-717 449-530 (1374)
24 KOG0941 E3 ubiquitin protein l 98.8 2.4E-10 5.2E-15 137.3 -6.3 180 411-599 13-197 (850)
25 PF13540 RCC1_2: Regulator of 98.7 2.2E-08 4.7E-13 73.3 5.1 30 582-611 1-30 (30)
26 PF13540 RCC1_2: Regulator of 98.7 2.9E-08 6.4E-13 72.6 4.5 30 414-443 1-30 (30)
27 cd00065 FYVE FYVE domain; Zinc 98.5 3.1E-08 6.8E-13 83.8 2.3 55 658-714 2-56 (57)
28 KOG2999 Regulator of Rac1, req 98.4 4.5E-08 9.8E-13 112.8 -1.1 107 17-124 535-661 (713)
29 KOG1842 FYVE finger-containing 98.2 1.2E-07 2.5E-12 107.0 -3.5 68 651-718 173-260 (505)
30 KOG1841 Smad anchor for recept 98.0 1.2E-06 2.6E-11 108.1 0.7 62 648-712 547-608 (1287)
31 cd01244 PH_RasGAP_CG9209 RAS_G 97.9 0.00011 2.4E-09 69.3 10.7 86 25-120 4-97 (98)
32 cd01235 PH_SETbf Set binding f 97.7 0.00034 7.3E-09 66.1 11.0 93 27-122 4-101 (101)
33 KOG1409 Uncharacterized conser 97.6 1.9E-05 4.2E-10 87.2 0.5 61 659-721 283-354 (404)
34 cd01236 PH_outspread Outspread 97.5 0.00066 1.4E-08 64.8 9.6 79 31-120 19-102 (104)
35 cd01238 PH_Tec Tec pleckstrin 97.5 0.00064 1.4E-08 65.3 9.6 79 37-120 21-105 (106)
36 cd01265 PH_PARIS-1 PARIS-1 ple 97.4 0.0017 3.7E-08 61.0 10.7 83 26-121 3-93 (95)
37 KOG1843 Uncharacterized conser 97.3 5.5E-05 1.2E-09 85.1 0.1 67 649-716 151-218 (473)
38 cd01233 Unc104 Unc-104 pleckst 97.3 0.0015 3.3E-08 61.9 9.4 93 22-123 3-99 (100)
39 cd01264 PH_melted Melted pleck 97.3 0.0016 3.4E-08 61.8 9.3 76 37-120 19-99 (101)
40 PF00169 PH: PH domain; Inter 97.2 0.0035 7.6E-08 58.1 10.8 90 27-122 6-103 (104)
41 smart00233 PH Pleckstrin homol 97.2 0.0027 5.8E-08 57.9 9.8 90 23-122 3-101 (102)
42 cd01266 PH_Gab Gab (Grb2-assoc 96.9 0.0078 1.7E-07 57.9 10.9 81 36-121 18-107 (108)
43 cd01220 PH_CDEP Chondrocyte-de 96.9 0.0063 1.4E-07 57.7 9.9 89 21-123 2-98 (99)
44 cd01251 PH_centaurin_alpha Cen 96.9 0.0092 2E-07 57.0 10.6 90 27-124 4-102 (103)
45 cd01219 PH_FGD FGD (faciogenit 96.7 0.01 2.2E-07 56.5 9.9 90 21-123 2-100 (101)
46 cd01247 PH_GPBP Goodpasture an 96.6 0.017 3.7E-07 53.9 10.1 79 27-120 4-90 (91)
47 cd00821 PH Pleckstrin homology 96.6 0.01 2.2E-07 53.5 8.5 85 25-120 3-95 (96)
48 KOG4424 Predicted Rho/Rac guan 96.3 0.0013 2.8E-08 77.6 0.8 66 655-723 412-478 (623)
49 PF15409 PH_8: Pleckstrin homo 96.2 0.031 6.8E-07 51.7 9.4 79 28-120 3-87 (89)
50 cd01250 PH_centaurin Centaurin 96.2 0.042 9.1E-07 50.6 10.3 74 34-119 13-92 (94)
51 cd01246 PH_oxysterol_bp Oxyste 96.2 0.038 8.2E-07 50.6 9.8 78 28-120 5-90 (91)
52 cd01257 PH_IRS Insulin recepto 95.9 0.081 1.8E-06 50.4 10.7 76 36-121 13-101 (101)
53 cd01260 PH_CNK Connector enhan 95.7 0.069 1.5E-06 50.0 9.5 72 36-120 19-95 (96)
54 cd01256 PH_dynamin Dynamin ple 95.7 0.046 9.9E-07 50.8 7.8 72 34-118 16-101 (110)
55 cd01218 PH_phafin2 Phafin2 Pl 95.2 0.16 3.5E-06 48.6 10.0 88 23-124 6-100 (104)
56 cd00900 PH-like Pleckstrin hom 95.1 0.19 4E-06 45.4 10.0 74 35-120 17-98 (99)
57 KOG1265 Phospholipase C [Lipid 95.0 0.12 2.6E-06 64.0 10.3 107 18-126 13-138 (1189)
58 KOG2059 Ras GTPase-activating 94.9 0.044 9.6E-07 66.4 6.4 98 22-129 565-671 (800)
59 PF15413 PH_11: Pleckstrin hom 94.8 0.2 4.3E-06 48.7 9.6 93 27-120 4-111 (112)
60 cd01252 PH_cytohesin Cytohesin 94.7 0.24 5.3E-06 48.8 10.2 86 27-125 5-116 (125)
61 cd01241 PH_Akt Akt pleckstrin 94.4 0.22 4.8E-06 47.4 8.8 92 22-121 2-101 (102)
62 cd01261 PH_SOS Son of Sevenles 94.4 0.39 8.5E-06 46.6 10.4 92 21-124 4-111 (112)
63 KOG1811 Predicted Zn2+-binding 94.3 0.0039 8.4E-08 73.4 -3.9 65 649-715 313-382 (1141)
64 KOG0230 Phosphatidylinositol-4 92.6 0.1 2.2E-06 68.2 4.2 49 659-720 6-54 (1598)
65 cd01245 PH_RasGAP_CG5898 RAS G 92.4 0.86 1.9E-05 43.2 9.1 75 37-120 16-97 (98)
66 PF08458 PH_2: Plant pleckstri 92.0 2 4.3E-05 41.3 10.9 96 26-126 1-107 (110)
67 KOG4693 Uncharacterized conser 90.2 5.6 0.00012 43.8 13.5 63 366-437 80-146 (392)
68 PF11725 AvrE: Pathogenicity f 89.9 4.2 9.1E-05 54.6 14.6 111 526-649 701-813 (1774)
69 cd01254 PH_PLD Phospholipase D 88.8 2.3 5.1E-05 41.8 9.0 82 37-120 33-120 (121)
70 PF02403 Seryl_tRNA_N: Seryl-t 88.8 1.8 3.9E-05 41.5 8.0 67 866-932 28-97 (108)
71 PRK15396 murein lipoprotein; P 88.7 2 4.3E-05 38.9 7.4 48 866-920 24-71 (78)
72 PF02318 FYVE_2: FYVE-type zin 88.4 0.31 6.7E-06 47.8 2.4 51 657-716 53-104 (118)
73 cd01222 PH_clg Clg (common-sit 87.3 4.1 8.8E-05 38.6 9.1 35 88-122 58-95 (97)
74 KOG0943 Predicted ubiquitin-pr 86.8 0.093 2E-06 66.0 -2.7 132 304-443 373-509 (3015)
75 PF04728 LPP: Lipoprotein leuc 86.8 5 0.00011 33.9 8.2 47 867-920 3-49 (56)
76 cd01242 PH_ROK Rok (Rho- assoc 86.7 5.5 0.00012 38.4 9.5 83 38-122 20-110 (112)
77 PRK09973 putative outer membra 86.6 2.4 5.3E-05 38.8 6.8 42 867-912 24-65 (85)
78 KOG3669 Uncharacterized conser 86.1 5.7 0.00012 47.9 11.3 107 312-436 190-299 (705)
79 cd01232 PH_TRIO Trio pleckstri 85.9 3.2 7E-05 40.5 7.8 91 22-123 6-113 (114)
80 PF03962 Mnd1: Mnd1 family; I 85.4 3.3 7.1E-05 44.0 8.3 64 866-930 61-124 (188)
81 KOG3723 PH domain protein Melt 85.0 0.43 9.3E-06 56.7 1.5 85 37-130 754-844 (851)
82 PLN02153 epithiospecifier prot 84.2 87 0.0019 36.2 23.4 16 422-438 130-145 (341)
83 cd01253 PH_beta_spectrin Beta- 84.1 8.7 0.00019 36.3 9.9 33 88-120 70-103 (104)
84 KOG0943 Predicted ubiquitin-pr 83.5 0.15 3.3E-06 64.2 -3.0 129 356-503 373-505 (3015)
85 KOG0971 Microtubule-associated 81.6 66 0.0014 41.2 17.9 14 636-649 30-43 (1243)
86 PF04849 HAP1_N: HAP1 N-termin 80.9 6 0.00013 44.8 8.4 54 866-933 233-286 (306)
87 TIGR02449 conserved hypothetic 80.7 13 0.00028 32.5 8.5 62 868-929 1-62 (65)
88 COG1579 Zn-ribbon protein, pos 80.7 6.9 0.00015 43.0 8.6 68 866-936 109-176 (239)
89 PF07106 TBPIP: Tat binding pr 80.4 5.2 0.00011 41.7 7.4 64 859-934 71-134 (169)
90 PLN02320 seryl-tRNA synthetase 78.8 5.3 0.00011 48.6 7.6 70 857-928 78-156 (502)
91 PF12325 TMF_TATA_bd: TATA ele 78.3 9.5 0.00021 37.5 7.9 25 907-931 59-83 (120)
92 PF12718 Tropomyosin_1: Tropom 78.1 13 0.00028 37.8 9.2 50 866-916 27-76 (143)
93 PRK05431 seryl-tRNA synthetase 78.0 7.9 0.00017 46.5 8.8 72 857-928 13-92 (425)
94 PF12718 Tropomyosin_1: Tropom 77.8 14 0.0003 37.6 9.2 65 866-930 65-129 (143)
95 PF02403 Seryl_tRNA_N: Seryl-t 77.5 17 0.00036 34.8 9.4 77 857-933 26-105 (108)
96 cd01237 Unc112 Unc-112 pleckst 77.1 14 0.0003 35.6 8.4 77 31-120 15-101 (106)
97 PF11725 AvrE: Pathogenicity f 76.8 6.7 0.00015 52.8 8.2 72 527-599 743-815 (1774)
98 PF06428 Sec2p: GDP/GTP exchan 76.8 13 0.00028 35.5 8.0 66 868-933 2-68 (100)
99 PHA01750 hypothetical protein 76.6 6.8 0.00015 33.8 5.4 33 866-898 41-73 (75)
100 KOG1090 Predicted dual-specifi 75.7 1.9 4.1E-05 54.4 2.8 76 38-122 1651-1731(1732)
101 PF03904 DUF334: Domain of unk 75.4 17 0.00038 39.2 9.4 61 866-928 42-109 (230)
102 TIGR03752 conj_TIGR03752 integ 75.2 14 0.0003 44.3 9.6 70 861-930 67-144 (472)
103 PF11559 ADIP: Afadin- and alp 75.1 24 0.00051 36.0 10.3 57 866-922 65-121 (151)
104 KOG4441 Proteins containing BT 74.7 88 0.0019 39.2 17.0 59 542-606 471-530 (571)
105 KOG3669 Uncharacterized conser 74.5 1.1E+02 0.0024 37.5 16.5 107 419-552 190-299 (705)
106 PTZ00267 NIMA-related protein 73.7 8.4 0.00018 46.9 7.8 89 25-122 380-476 (478)
107 KOG0230 Phosphatidylinositol-4 73.7 2.8 6.1E-05 55.5 3.7 34 653-688 92-125 (1598)
108 cd01228 PH_BCR-related BCR (br 72.9 14 0.0003 34.8 6.9 81 22-122 3-94 (96)
109 TIGR00414 serS seryl-tRNA synt 72.8 13 0.00028 44.6 8.8 64 867-930 30-97 (418)
110 cd01240 PH_beta-ARK Beta adren 72.5 7.1 0.00015 37.4 5.1 78 38-126 21-102 (116)
111 PLN02678 seryl-tRNA synthetase 72.4 13 0.00028 44.9 8.6 73 857-930 17-99 (448)
112 PF07851 TMPIT: TMPIT-like pro 72.1 9.7 0.00021 43.8 7.1 31 906-936 65-95 (330)
113 KOG3551 Syntrophins (type beta 71.7 9.1 0.0002 44.1 6.6 107 14-123 147-272 (506)
114 PHA03098 kelch-like protein; P 71.5 1.3E+02 0.0028 37.1 17.5 17 367-384 335-351 (534)
115 PF15619 Lebercilin: Ciliary p 71.2 23 0.0005 37.9 9.3 67 866-932 117-187 (194)
116 PF07569 Hira: TUP1-like enhan 71.2 14 0.00031 40.2 8.0 77 356-437 12-93 (219)
117 KOG4552 Vitamin-D-receptor int 70.7 24 0.00052 37.4 8.9 53 868-923 68-120 (272)
118 cd01227 PH_Dbs Dbs (DBL's big 69.8 32 0.00069 34.6 9.3 40 86-125 77-118 (133)
119 KOG1274 WD40 repeat protein [G 69.7 60 0.0013 41.7 13.5 73 364-442 13-89 (933)
120 PHA02713 hypothetical protein; 69.5 80 0.0017 39.4 15.1 20 365-384 341-360 (557)
121 PF15406 PH_6: Pleckstrin homo 68.5 13 0.00029 35.6 6.0 65 42-120 42-111 (112)
122 PRK11637 AmiB activator; Provi 68.1 29 0.00063 41.7 10.5 33 866-898 60-92 (428)
123 KOG4603 TBP-1 interacting prot 67.9 20 0.00044 36.9 7.5 61 860-932 79-139 (201)
124 PF09738 DUF2051: Double stran 67.7 48 0.001 38.0 11.4 52 875-933 113-164 (302)
125 KOG2264 Exostosin EXT1L [Signa 67.1 31 0.00066 41.7 9.8 71 866-936 81-155 (907)
126 PHA03098 kelch-like protein; P 66.9 1.8E+02 0.0039 35.8 17.5 15 370-384 289-303 (534)
127 KOG0646 WD40 repeat protein [G 66.6 1.9E+02 0.0041 34.7 15.9 23 530-552 222-244 (476)
128 PF14197 Cep57_CLD_2: Centroso 66.5 65 0.0014 28.6 9.5 62 867-928 5-66 (69)
129 PRK11637 AmiB activator; Provi 66.1 30 0.00065 41.6 10.1 64 860-923 47-110 (428)
130 cd01230 PH_EFA6 EFA6 Pleckstri 65.3 69 0.0015 31.5 10.6 39 86-124 74-113 (117)
131 PF10267 Tmemb_cc2: Predicted 64.6 87 0.0019 37.2 13.0 61 860-923 212-272 (395)
132 PF04156 IncA: IncA protein; 64.5 46 0.001 35.1 10.1 68 862-929 83-150 (191)
133 KOG4424 Predicted Rho/Rac guan 64.0 12 0.00026 45.5 5.8 104 19-128 270-375 (623)
134 PF10883 DUF2681: Protein of u 63.9 31 0.00068 32.0 7.3 51 866-922 29-79 (87)
135 PF04841 Vps16_N: Vps16, N-ter 63.9 3E+02 0.0065 33.0 17.9 69 306-382 82-153 (410)
136 PF06092 DUF943: Enterobacteri 63.8 4 8.7E-05 41.9 1.7 26 1053-1078 51-76 (157)
137 COG4238 Murein lipoprotein [Ce 62.3 36 0.00078 30.4 7.0 41 866-910 24-64 (78)
138 PF10211 Ax_dynein_light: Axon 61.7 41 0.00089 35.9 8.9 31 869-899 122-152 (189)
139 COG2433 Uncharacterized conser 61.6 39 0.00084 41.6 9.5 61 866-926 428-491 (652)
140 PF04977 DivIC: Septum formati 61.3 19 0.00042 32.0 5.6 29 866-894 23-51 (80)
141 KOG0291 WD40-repeat-containing 61.1 4.6E+02 0.0099 33.6 25.7 120 307-441 300-424 (893)
142 KOG1729 FYVE finger containing 60.2 2.7 6E-05 47.4 -0.2 65 651-715 13-81 (288)
143 PF05278 PEARLI-4: Arabidopsis 60.1 44 0.00096 37.4 9.0 53 882-934 187-239 (269)
144 KOG1900 Nuclear pore complex, 59.9 1.4E+02 0.003 40.1 14.6 217 318-554 93-339 (1311)
145 PRK09039 hypothetical protein; 59.8 51 0.0011 38.5 10.1 38 866-903 136-173 (343)
146 PF07888 CALCOCO1: Calcium bin 59.6 53 0.0012 40.4 10.3 34 866-899 163-196 (546)
147 PF10186 Atg14: UV radiation r 59.5 51 0.0011 37.1 10.0 33 866-898 76-108 (302)
148 PRK10869 recombination and rep 59.5 33 0.00072 42.7 9.0 20 910-929 368-387 (553)
149 cd01221 PH_ephexin Ephexin Ple 58.8 51 0.0011 32.8 8.3 32 88-119 82-119 (125)
150 KOG2391 Vacuolar sorting prote 57.9 1.4E+02 0.0031 34.4 12.5 63 857-923 214-277 (365)
151 PF07160 DUF1395: Protein of u 57.9 58 0.0013 36.1 9.6 71 866-936 5-80 (243)
152 KOG2106 Uncharacterized conser 57.8 4.3E+02 0.0093 32.2 18.9 87 309-435 216-303 (626)
153 PRK02119 hypothetical protein; 57.7 45 0.00097 29.9 7.1 33 867-899 2-34 (73)
154 TIGR02977 phageshock_pspA phag 57.7 52 0.0011 35.8 9.2 45 866-910 44-88 (219)
155 cd01223 PH_Vav Vav pleckstrin 57.5 72 0.0016 31.3 8.9 97 23-124 6-113 (116)
156 TIGR00414 serS seryl-tRNA synt 57.1 59 0.0013 39.0 10.3 77 859-935 29-109 (418)
157 PF03961 DUF342: Protein of un 56.4 44 0.00096 40.5 9.2 67 866-932 333-405 (451)
158 PRK14131 N-acetylneuraminic ac 56.3 3.2E+02 0.007 32.0 16.3 18 367-384 131-148 (376)
159 KOG0977 Nuclear envelope prote 56.3 44 0.00096 41.0 9.0 63 866-928 112-174 (546)
160 PF05667 DUF812: Protein of un 56.3 66 0.0014 40.3 10.8 42 864-905 325-366 (594)
161 PRK14153 heat shock protein Gr 54.9 64 0.0014 34.5 8.9 65 858-923 25-95 (194)
162 KOG4441 Proteins containing BT 54.9 1.1E+02 0.0023 38.5 12.3 22 533-554 509-530 (571)
163 COG4026 Uncharacterized protei 54.4 79 0.0017 34.1 9.2 26 1024-1049 229-254 (290)
164 KOG4657 Uncharacterized conser 54.1 34 0.00074 36.9 6.6 46 866-911 92-140 (246)
165 COG0497 RecN ATPase involved i 53.9 54 0.0012 40.5 9.2 60 866-929 320-388 (557)
166 COG1842 PspA Phage shock prote 53.8 60 0.0013 35.6 8.7 56 866-923 44-99 (225)
167 PRK05431 seryl-tRNA synthetase 53.7 75 0.0016 38.3 10.4 78 859-936 27-107 (425)
168 PF04156 IncA: IncA protein; 53.5 71 0.0015 33.7 9.2 64 867-930 81-144 (191)
169 PF04111 APG6: Autophagy prote 53.4 81 0.0018 36.4 10.2 40 860-899 50-89 (314)
170 PLN02153 epithiospecifier prot 53.4 4E+02 0.0088 30.6 23.9 17 367-384 130-146 (341)
171 KOG2391 Vacuolar sorting prote 53.3 34 0.00074 39.1 6.8 45 860-904 235-283 (365)
172 PF03962 Mnd1: Mnd1 family; I 53.3 58 0.0013 34.7 8.4 72 864-936 66-137 (188)
173 PF10211 Ax_dynein_light: Axon 53.2 1.1E+02 0.0024 32.6 10.5 37 866-902 126-162 (189)
174 TIGR03547 muta_rot_YjhT mutatr 52.9 2.3E+02 0.0049 32.7 14.1 15 540-554 315-329 (346)
175 PF10458 Val_tRNA-synt_C: Valy 52.2 40 0.00088 29.4 5.8 57 872-928 2-65 (66)
176 PF07798 DUF1640: Protein of u 51.8 64 0.0014 33.9 8.4 62 875-936 74-140 (177)
177 PRK03564 formate dehydrogenase 51.6 11 0.00023 43.2 2.7 75 638-721 192-267 (309)
178 PF11559 ADIP: Afadin- and alp 51.3 84 0.0018 32.0 9.0 56 875-930 60-115 (151)
179 TIGR03185 DNA_S_dndD DNA sulfu 51.3 62 0.0013 41.2 9.7 34 866-899 434-467 (650)
180 PF15290 Syntaphilin: Golgi-lo 51.0 1.6E+02 0.0035 33.0 11.3 29 870-898 71-99 (305)
181 KOG3067 Translin family protei 50.7 81 0.0018 33.3 8.5 59 871-936 24-82 (226)
182 TIGR01562 FdhE formate dehydro 50.5 12 0.00025 42.9 2.8 75 638-721 189-267 (305)
183 PHA02047 phage lambda Rz1-like 50.1 95 0.0021 29.2 7.9 27 873-899 33-59 (101)
184 cd01263 PH_anillin Anillin Ple 49.8 98 0.0021 30.7 8.7 17 103-119 104-120 (122)
185 PF13870 DUF4201: Domain of un 49.6 1E+02 0.0022 32.4 9.5 41 866-906 41-81 (177)
186 KOG1900 Nuclear pore complex, 49.5 1.8E+02 0.0039 39.2 13.2 160 424-613 92-278 (1311)
187 KOG0278 Serine/threonine kinas 49.5 1.8E+02 0.004 32.3 11.2 91 346-459 134-228 (334)
188 KOG0612 Rho-associated, coiled 49.3 1.6E+02 0.0035 39.4 12.5 48 888-935 487-534 (1317)
189 PF04508 Pox_A_type_inc: Viral 49.2 18 0.00039 25.1 2.4 18 867-884 1-18 (23)
190 COG4257 Vgb Streptogramin lyas 49.2 1.2E+02 0.0026 34.2 10.0 134 257-436 68-205 (353)
191 COG4345 Uncharacterized protei 49.1 66 0.0014 33.2 7.4 50 878-927 122-171 (181)
192 KOG4001 Axonemal dynein light 49.0 1E+02 0.0022 32.8 9.0 64 866-929 184-251 (259)
193 PF11932 DUF3450: Protein of u 48.9 1.4E+02 0.003 33.1 11.0 19 1022-1040 184-202 (251)
194 PF08614 ATG16: Autophagy prot 48.8 60 0.0013 34.6 7.8 33 866-898 115-147 (194)
195 PF00038 Filament: Intermediat 48.7 1E+02 0.0022 35.1 10.2 62 866-930 215-276 (312)
196 PF13863 DUF4200: Domain of un 48.6 1.5E+02 0.0032 29.0 10.0 59 872-930 37-95 (126)
197 PF10168 Nup88: Nuclear pore c 48.5 74 0.0016 40.9 9.7 58 875-932 566-623 (717)
198 PF03310 Cauli_DNA-bind: Cauli 48.2 60 0.0013 31.9 6.7 22 904-925 50-71 (121)
199 PRK14161 heat shock protein Gr 48.2 95 0.0021 32.8 8.9 57 866-923 25-81 (178)
200 smart00030 CLb CLUSTERIN Beta 48.1 74 0.0016 33.9 7.8 43 876-918 38-80 (206)
201 KOG0315 G-protein beta subunit 48.1 4.4E+02 0.0095 29.5 17.9 207 358-604 10-242 (311)
202 PF09728 Taxilin: Myosin-like 48.1 97 0.0021 35.7 9.7 69 866-934 134-220 (309)
203 PLN02943 aminoacyl-tRNA ligase 48.1 31 0.00068 45.8 6.5 66 866-931 881-953 (958)
204 KOG0993 Rab5 GTPase effector R 47.9 0.76 1.6E-05 52.6 -7.0 61 652-716 462-524 (542)
205 KOG0933 Structural maintenance 47.7 94 0.002 40.5 10.0 28 908-935 856-883 (1174)
206 PF13851 GAS: Growth-arrest sp 47.6 70 0.0015 34.5 8.0 59 866-928 47-105 (201)
207 KOG0930 Guanine nucleotide exc 47.6 1E+02 0.0022 34.5 9.0 99 24-124 262-377 (395)
208 PHA02790 Kelch-like protein; P 47.5 1.4E+02 0.0031 36.4 11.8 14 371-384 314-327 (480)
209 PF05377 FlaC_arch: Flagella a 47.4 68 0.0015 27.2 6.0 37 867-903 7-43 (55)
210 PF06785 UPF0242: Uncharacteri 47.2 52 0.0011 37.5 7.0 40 866-905 140-179 (401)
211 PRK14156 heat shock protein Gr 47.0 95 0.0021 32.8 8.6 57 866-923 33-89 (177)
212 PF14643 DUF4455: Domain of un 46.9 65 0.0014 39.4 8.6 62 866-936 67-128 (473)
213 PF09006 Surfac_D-trimer: Lung 46.9 45 0.00097 27.1 4.6 26 870-895 2-27 (46)
214 COG0172 SerS Seryl-tRNA synthe 46.7 66 0.0014 38.6 8.2 60 1017-1076 242-318 (429)
215 PRK10884 SH3 domain-containing 46.6 1.1E+02 0.0024 33.1 9.3 27 866-892 99-125 (206)
216 PF06785 UPF0242: Uncharacteri 46.6 1.1E+02 0.0023 35.2 9.2 52 861-912 93-147 (401)
217 PF04012 PspA_IM30: PspA/IM30 46.4 85 0.0018 34.0 8.7 45 866-910 43-87 (221)
218 PF01920 Prefoldin_2: Prefoldi 46.3 1.7E+02 0.0036 27.4 9.7 32 867-898 5-36 (106)
219 PF07569 Hira: TUP1-like enhan 46.2 62 0.0014 35.2 7.5 80 579-658 12-105 (219)
220 PF10805 DUF2730: Protein of u 46.1 1.6E+02 0.0036 28.3 9.5 66 866-931 34-101 (106)
221 PRK14155 heat shock protein Gr 46.0 89 0.0019 33.9 8.4 39 866-904 19-57 (208)
222 PF12325 TMF_TATA_bd: TATA ele 45.7 1.7E+02 0.0037 28.9 9.6 38 862-899 25-62 (120)
223 TIGR03752 conj_TIGR03752 integ 45.6 87 0.0019 37.8 8.9 33 866-898 65-97 (472)
224 PLN02320 seryl-tRNA synthetase 45.5 1.1E+02 0.0025 37.4 10.1 77 859-935 92-170 (502)
225 PRK14143 heat shock protein Gr 45.5 1.8E+02 0.0039 32.3 10.8 57 866-923 73-129 (238)
226 KOG4797 Transcriptional regula 45.1 77 0.0017 30.3 6.6 45 866-926 66-110 (123)
227 PRK10884 SH3 domain-containing 45.0 1.6E+02 0.0035 31.8 10.3 32 867-898 93-124 (206)
228 PTZ00419 valyl-tRNA synthetase 44.8 33 0.00072 45.9 6.1 66 866-931 921-993 (995)
229 COG0576 GrpE Molecular chapero 44.7 1E+02 0.0023 32.9 8.7 57 866-923 42-98 (193)
230 PHA02713 hypothetical protein; 44.6 75 0.0016 39.7 8.8 19 314-332 342-360 (557)
231 PF00261 Tropomyosin: Tropomyo 44.6 29 0.00062 38.3 4.6 36 866-901 28-63 (237)
232 KOG1029 Endocytic adaptor prot 44.5 77 0.0017 40.0 8.4 44 854-897 469-516 (1118)
233 PF04762 IKI3: IKI3 family; I 44.3 9.3E+02 0.02 32.2 19.2 203 356-604 426-636 (928)
234 PF15404 PH_4: Pleckstrin homo 44.2 1.4E+02 0.003 31.8 9.4 30 24-54 2-31 (185)
235 cd01259 PH_Apbb1ip Apbb1ip (Am 44.1 1.1E+02 0.0023 30.0 7.6 91 24-122 3-108 (114)
236 PF11068 YlqD: YlqD protein; 44.1 2.2E+02 0.0048 28.6 10.3 63 870-936 23-93 (131)
237 COG3883 Uncharacterized protei 44.0 1.3E+02 0.0028 33.8 9.4 66 867-932 38-103 (265)
238 TIGR01069 mutS2 MutS2 family p 43.9 98 0.0021 40.2 9.9 29 866-894 531-559 (771)
239 PF04899 MbeD_MobD: MbeD/MobD 43.8 34 0.00073 30.5 4.0 29 866-894 41-69 (70)
240 PRK13729 conjugal transfer pil 43.8 81 0.0018 38.1 8.4 51 1018-1075 291-341 (475)
241 cd01239 PH_PKD Protein kinase 43.6 2.4E+02 0.0051 27.7 9.9 66 27-98 5-74 (117)
242 PF14593 PH_3: PH domain; PDB: 43.4 1.6E+02 0.0034 28.4 8.8 87 22-124 7-101 (104)
243 COG3074 Uncharacterized protei 43.4 72 0.0016 28.1 5.7 31 866-896 17-47 (79)
244 TIGR01069 mutS2 MutS2 family p 43.3 89 0.0019 40.6 9.4 16 107-122 39-54 (771)
245 PF06005 DUF904: Protein of un 43.2 1.2E+02 0.0027 27.1 7.5 18 911-928 55-72 (72)
246 PRK00409 recombination and DNA 43.0 1E+02 0.0022 40.2 9.9 13 107-119 39-51 (782)
247 PF12777 MT: Microtubule-bindi 42.7 1.1E+02 0.0023 35.8 9.2 36 862-897 10-45 (344)
248 PF11932 DUF3450: Protein of u 42.7 1.4E+02 0.0029 33.3 9.6 6 922-927 111-116 (251)
249 PF10473 CENP-F_leu_zip: Leuci 42.6 1.7E+02 0.0036 29.8 9.2 60 866-932 9-68 (140)
250 PRK03947 prefoldin subunit alp 42.4 74 0.0016 32.0 6.9 45 866-921 5-49 (140)
251 PF15358 TSKS: Testis-specific 42.2 1.4E+02 0.0031 35.0 9.5 56 849-904 117-179 (558)
252 cd01224 PH_Collybistin Collybi 42.0 1.7E+02 0.0037 28.4 8.7 84 28-119 8-104 (109)
253 PF10186 Atg14: UV radiation r 41.4 1.3E+02 0.0028 33.9 9.5 32 868-899 71-102 (302)
254 KOG0241 Kinesin-like protein [ 41.4 81 0.0018 40.7 8.0 64 866-932 370-434 (1714)
255 PF07888 CALCOCO1: Calcium bin 41.3 1.5E+02 0.0034 36.5 10.3 63 866-928 156-218 (546)
256 PF01519 DUF16: Protein of unk 41.3 1.3E+02 0.0028 28.8 7.6 48 871-932 50-97 (102)
257 PF14362 DUF4407: Domain of un 41.2 1.1E+02 0.0025 34.7 9.0 62 873-934 134-207 (301)
258 PRK05729 valS valyl-tRNA synth 41.1 35 0.00077 44.9 5.5 63 866-928 803-872 (874)
259 PF00038 Filament: Intermediat 41.1 1.3E+02 0.0027 34.4 9.4 34 866-899 53-86 (312)
260 PRK00846 hypothetical protein; 41.1 1.6E+02 0.0036 26.8 7.9 52 874-932 13-64 (77)
261 KOG4715 SWI/SNF-related matrix 40.3 1E+02 0.0022 34.9 7.8 27 866-892 220-246 (410)
262 PRK00888 ftsB cell division pr 40.2 71 0.0015 30.7 6.0 29 866-894 33-61 (105)
263 PF08317 Spc7: Spc7 kinetochor 40.1 69 0.0015 37.1 7.0 12 918-929 278-289 (325)
264 PF02646 RmuC: RmuC family; I 40.1 91 0.002 35.8 7.9 96 856-951 16-188 (304)
265 PRK09174 F0F1 ATP synthase sub 40.0 2E+02 0.0044 31.0 10.1 42 866-910 93-134 (204)
266 KOG1760 Molecular chaperone Pr 39.9 1.7E+02 0.0037 28.9 8.3 63 866-928 36-117 (131)
267 KOG3433 Protein involved in me 39.9 1.4E+02 0.003 31.5 8.1 65 870-934 84-148 (203)
268 PF12777 MT: Microtubule-bindi 39.8 1.3E+02 0.0028 35.1 9.3 41 870-910 11-51 (344)
269 PF05622 HOOK: HOOK protein; 39.7 9.7 0.00021 48.9 0.0 70 867-936 291-383 (713)
270 TIGR02338 gimC_beta prefoldin, 39.6 2.3E+02 0.0049 27.3 9.5 34 866-899 9-42 (110)
271 PHA02562 46 endonuclease subun 39.5 1.1E+02 0.0024 37.9 9.3 45 866-910 180-224 (562)
272 TIGR01063 gyrA DNA gyrase, A s 39.5 1E+03 0.022 31.3 22.2 121 311-445 543-674 (800)
273 PRK14141 heat shock protein Gr 39.4 1.3E+02 0.0028 32.6 8.4 56 866-922 37-92 (209)
274 PF01093 Clusterin: Clusterin; 39.1 1E+02 0.0022 37.0 8.3 62 858-919 14-75 (436)
275 PF13815 Dzip-like_N: Iguana/D 39.0 79 0.0017 31.0 6.2 28 872-899 78-105 (118)
276 PF10422 LRS4: Monopolin compl 39.0 10 0.00022 41.5 0.0 58 866-926 57-114 (249)
277 PRK14154 heat shock protein Gr 38.9 1.5E+02 0.0033 32.1 8.8 56 867-923 59-114 (208)
278 PF08537 NBP1: Fungal Nap bind 38.9 94 0.002 35.6 7.5 34 866-899 174-207 (323)
279 KOG3576 Ovo and related transc 38.8 6.8 0.00015 41.4 -1.3 33 655-687 114-158 (267)
280 KOG3799 Rab3 effector RIM1 and 38.8 12 0.00027 36.8 0.6 51 657-714 64-115 (169)
281 PRK00846 hypothetical protein; 38.8 3.1E+02 0.0067 25.0 9.4 51 878-935 10-60 (77)
282 PF01025 GrpE: GrpE; InterPro 38.6 1.1E+02 0.0023 31.6 7.5 65 866-932 17-81 (165)
283 PF15456 Uds1: Up-regulated Du 38.5 1.8E+02 0.004 28.9 8.7 66 866-932 21-97 (124)
284 PF04977 DivIC: Septum formati 38.5 67 0.0014 28.5 5.3 34 866-899 16-49 (80)
285 cd01243 PH_MRCK MRCK (myotonic 38.2 3.6E+02 0.0078 26.7 10.3 24 99-122 96-119 (122)
286 PRK14162 heat shock protein Gr 38.1 2E+02 0.0044 30.8 9.5 57 866-923 45-101 (194)
287 PLN02678 seryl-tRNA synthetase 38.0 1.3E+02 0.0029 36.4 9.1 77 859-935 32-111 (448)
288 KOG0649 WD40 repeat protein [G 37.6 4E+02 0.0086 29.7 11.5 151 362-552 18-183 (325)
289 KOG0804 Cytoplasmic Zn-finger 37.6 1.7E+02 0.0036 35.0 9.3 33 867-899 368-400 (493)
290 PRK14139 heat shock protein Gr 37.5 1.6E+02 0.0034 31.4 8.5 56 866-922 38-93 (185)
291 COG1340 Uncharacterized archae 37.1 2.4E+02 0.0053 32.1 10.3 65 866-930 157-242 (294)
292 PRK06568 F0F1 ATP synthase sub 37.1 3E+02 0.0065 28.4 10.3 39 866-907 44-82 (154)
293 PF04111 APG6: Autophagy prote 37.1 2.3E+02 0.005 32.7 10.6 34 866-899 49-82 (314)
294 PF11853 DUF3373: Protein of u 37.0 29 0.00063 42.0 3.4 33 866-899 24-56 (489)
295 COG3064 TolA Membrane protein 37.0 1E+02 0.0023 34.9 7.3 23 894-916 146-168 (387)
296 PRK00409 recombination and DNA 36.8 1.3E+02 0.0029 39.1 9.5 17 867-883 537-553 (782)
297 KOG0971 Microtubule-associated 36.5 1.7E+02 0.0036 37.9 9.6 35 866-900 409-443 (1243)
298 KOG1841 Smad anchor for recept 36.2 38 0.00081 44.3 4.3 54 651-719 650-703 (1287)
299 PF09074 Mer2: Mer2; InterPro 36.2 3.6E+02 0.0078 28.8 10.7 20 907-926 75-94 (190)
300 COG4396 Mu-like prophage host- 36.1 1.7E+02 0.0038 29.3 7.8 60 866-931 17-76 (170)
301 PRK14140 heat shock protein Gr 35.8 2E+02 0.0044 30.8 9.0 56 866-922 43-98 (191)
302 PHA02790 Kelch-like protein; P 35.7 2.2E+02 0.0049 34.7 10.9 16 369-384 356-371 (480)
303 PF12709 Kinetocho_Slk19: Cent 35.5 1.4E+02 0.0029 27.9 6.6 24 875-898 50-73 (87)
304 PF04102 SlyX: SlyX; InterPro 35.5 2.2E+02 0.0047 25.2 7.8 20 875-894 5-24 (69)
305 PF04216 FdhE: Protein involve 35.5 13 0.00029 42.2 0.2 15 706-720 238-252 (290)
306 PRK10698 phage shock protein P 35.4 1.9E+02 0.0042 31.6 9.2 39 872-910 50-88 (222)
307 TIGR00293 prefoldin, archaeal 35.3 76 0.0017 31.1 5.6 41 870-921 2-42 (126)
308 PRK06568 F0F1 ATP synthase sub 35.2 3.7E+02 0.0081 27.7 10.6 55 859-913 41-103 (154)
309 KOG0646 WD40 repeat protein [G 35.2 8.9E+02 0.019 29.3 15.8 99 307-423 84-186 (476)
310 PRK14011 prefoldin subunit alp 35.0 93 0.002 31.7 6.1 34 866-899 2-35 (144)
311 PF10168 Nup88: Nuclear pore c 34.8 1.6E+02 0.0035 37.9 9.7 11 261-271 41-51 (717)
312 PRK04325 hypothetical protein; 34.7 1.8E+02 0.0038 26.2 7.2 17 916-932 44-60 (74)
313 COG3599 DivIVA Cell division i 34.6 1.6E+02 0.0036 31.9 8.3 74 855-928 24-104 (212)
314 KOG1937 Uncharacterized conser 34.5 3.4E+02 0.0074 32.6 11.1 43 860-902 234-286 (521)
315 TIGR03545 conserved hypothetic 34.3 1.5E+02 0.0033 37.0 9.0 13 914-926 245-257 (555)
316 PRK14151 heat shock protein Gr 34.3 1.9E+02 0.0042 30.5 8.6 56 866-922 26-81 (176)
317 KOG4403 Cell surface glycoprot 34.2 2E+02 0.0043 34.1 9.1 47 866-912 308-374 (575)
318 COG4942 Membrane-bound metallo 34.2 1.2E+02 0.0027 36.1 7.8 11 916-926 94-104 (420)
319 KOG0976 Rho/Rac1-interacting s 33.8 1.4E+02 0.0031 37.8 8.4 63 867-936 99-161 (1265)
320 smart00338 BRLZ basic region l 33.7 73 0.0016 27.6 4.5 27 869-895 35-61 (65)
321 cd04779 HTH_MerR-like_sg4 Heli 33.6 1.6E+02 0.0035 29.6 7.6 14 923-936 110-123 (134)
322 PRK14163 heat shock protein Gr 33.6 3.8E+02 0.0082 29.3 10.8 36 866-901 46-81 (214)
323 COG1579 Zn-ribbon protein, pos 33.5 2E+02 0.0043 31.9 8.7 51 860-910 110-160 (239)
324 COG4741 Predicted secreted end 33.5 3E+02 0.0066 28.2 9.2 28 869-896 17-44 (175)
325 PRK14148 heat shock protein Gr 33.5 2.4E+02 0.0053 30.3 9.3 57 866-923 46-102 (195)
326 CHL00118 atpG ATP synthase CF0 33.4 3.3E+02 0.0071 27.9 10.1 42 866-910 62-103 (156)
327 PF08317 Spc7: Spc7 kinetochor 33.3 2.3E+02 0.005 32.8 9.9 22 876-897 211-232 (325)
328 PF01486 K-box: K-box region; 33.3 2.3E+02 0.0049 26.8 8.2 60 866-927 18-86 (100)
329 PF14662 CCDC155: Coiled-coil 33.2 3.5E+02 0.0076 28.9 10.1 33 866-898 21-53 (193)
330 PF12329 TMF_DNA_bd: TATA elem 33.1 3.6E+02 0.0079 24.2 9.6 40 860-899 5-44 (74)
331 PRK13729 conjugal transfer pil 33.1 64 0.0014 39.0 5.3 50 877-933 79-128 (475)
332 smart00706 TECPR Beta propelle 32.9 65 0.0014 24.1 3.6 24 413-436 9-33 (35)
333 PRK04406 hypothetical protein; 32.9 2.2E+02 0.0047 25.8 7.5 27 872-898 9-35 (75)
334 KOG1003 Actin filament-coating 32.8 2E+02 0.0044 30.7 8.2 58 875-935 47-107 (205)
335 PF15035 Rootletin: Ciliary ro 32.8 1.6E+02 0.0034 31.3 7.7 61 866-926 15-91 (182)
336 PF06008 Laminin_I: Laminin Do 32.3 1.4E+02 0.003 33.4 7.7 58 875-932 53-110 (264)
337 PRK13454 F0F1 ATP synthase sub 32.3 3.3E+02 0.0071 28.7 10.1 18 866-883 71-88 (181)
338 PRK04778 septation ring format 32.2 1.8E+02 0.0039 36.5 9.4 9 1022-1030 546-554 (569)
339 COG1730 GIM5 Predicted prefold 32.2 1.4E+02 0.0031 30.5 6.9 46 866-922 5-50 (145)
340 PF07851 TMPIT: TMPIT-like pro 32.1 1.7E+02 0.0036 34.0 8.2 20 914-933 66-85 (330)
341 PF10498 IFT57: Intra-flagella 32.0 2.4E+02 0.0051 33.3 9.7 47 888-934 266-312 (359)
342 PRK14160 heat shock protein Gr 32.0 2.3E+02 0.005 30.8 8.9 63 870-934 57-119 (211)
343 PF14689 SPOB_a: Sensor_kinase 32.0 2.9E+02 0.0063 23.8 7.9 56 866-930 3-58 (62)
344 PF07989 Microtub_assoc: Micro 32.0 1E+02 0.0022 27.9 5.2 26 867-892 43-68 (75)
345 PRK07857 hypothetical protein; 31.8 2.3E+02 0.005 27.4 7.8 12 914-925 75-86 (106)
346 TIGR01843 type_I_hlyD type I s 31.7 2.2E+02 0.0047 33.6 9.8 64 869-932 205-269 (423)
347 PF02344 Myc-LZ: Myc leucine z 31.6 1.2E+02 0.0027 22.7 4.5 26 869-894 3-28 (32)
348 PRK14159 heat shock protein Gr 31.6 2.2E+02 0.0049 30.0 8.5 56 866-922 29-84 (176)
349 PF13935 Ead_Ea22: Ead/Ea22-li 31.5 2.8E+02 0.0061 28.0 9.0 59 866-924 73-134 (139)
350 PF06364 DUF1068: Protein of u 31.4 1.8E+02 0.0038 30.3 7.3 51 866-918 79-136 (176)
351 PF09730 BicD: Microtubule-ass 31.1 2.3E+02 0.005 36.3 9.9 62 867-928 391-459 (717)
352 KOG0982 Centrosomal protein Nu 31.0 2.7E+02 0.0058 33.1 9.5 65 866-930 310-388 (502)
353 PRK04325 hypothetical protein; 31.0 4E+02 0.0086 24.0 9.2 49 872-934 7-55 (74)
354 PF05529 Bap31: B-cell recepto 30.9 73 0.0016 33.8 4.9 19 866-884 124-142 (192)
355 PF13851 GAS: Growth-arrest sp 30.9 3.7E+02 0.0081 28.9 10.3 66 866-931 99-172 (201)
356 PRK14144 heat shock protein Gr 30.8 2.2E+02 0.0049 30.6 8.4 57 866-923 51-107 (199)
357 KOG4514 Uncharacterized conser 30.8 5.8E+02 0.012 27.0 10.8 27 900-929 186-212 (222)
358 PF06156 DUF972: Protein of un 30.8 1.6E+02 0.0034 28.6 6.6 34 866-899 21-54 (107)
359 PF06273 eIF-4B: Plant specifi 30.7 1.4E+02 0.003 36.1 7.5 19 912-930 399-417 (492)
360 PF14197 Cep57_CLD_2: Centroso 30.7 3.9E+02 0.0084 23.8 8.6 25 871-895 2-26 (69)
361 PF10779 XhlA: Haemolysin XhlA 30.6 2.1E+02 0.0045 25.4 6.9 14 918-931 36-49 (71)
362 PF00804 Syntaxin: Syntaxin; 30.6 3.3E+02 0.0071 25.0 8.9 64 866-929 23-96 (103)
363 smart00706 TECPR Beta propelle 30.5 87 0.0019 23.4 3.9 25 357-381 8-33 (35)
364 PF04420 CHD5: CHD5-like prote 30.5 1.4E+02 0.003 31.0 6.8 34 866-899 46-91 (161)
365 PF13805 Pil1: Eisosome compon 30.4 1.5E+02 0.0033 33.4 7.3 24 909-932 191-214 (271)
366 PF12761 End3: Actin cytoskele 30.4 1.1E+02 0.0023 32.8 5.8 58 867-930 96-153 (195)
367 PF11365 DUF3166: Protein of u 30.3 1.1E+02 0.0025 28.9 5.4 78 860-937 4-90 (96)
368 PF08614 ATG16: Autophagy prot 30.2 70 0.0015 34.1 4.6 33 866-898 101-133 (194)
369 smart00787 Spc7 Spc7 kinetocho 29.9 1.1E+02 0.0024 35.3 6.5 24 868-891 219-242 (312)
370 PF07061 Swi5: Swi5; InterPro 29.9 1.6E+02 0.0035 27.2 6.2 20 913-932 37-58 (83)
371 PF10224 DUF2205: Predicted co 29.9 2.5E+02 0.0055 25.8 7.4 29 866-894 22-50 (80)
372 PRK14164 heat shock protein Gr 29.7 2.3E+02 0.005 31.0 8.4 56 866-922 76-131 (218)
373 PF10828 DUF2570: Protein of u 29.6 5.2E+02 0.011 25.0 10.1 44 866-909 24-67 (110)
374 KOG3088 Secretory carrier memb 29.6 2E+02 0.0044 32.4 8.0 18 859-876 59-76 (313)
375 PLN02193 nitrile-specifier pro 29.5 1.1E+03 0.024 28.6 18.2 198 366-605 167-384 (470)
376 PRK12472 hypothetical protein; 29.5 1.8E+02 0.004 35.2 8.1 34 866-899 217-250 (508)
377 cd01249 PH_oligophrenin Oligop 29.5 88 0.0019 30.1 4.6 34 86-119 67-102 (104)
378 TIGR03548 mutarot_permut cycli 29.4 4.6E+02 0.01 29.9 11.6 17 367-384 116-132 (323)
379 PF09304 Cortex-I_coil: Cortex 29.3 3.4E+02 0.0073 26.3 8.3 39 870-909 47-85 (107)
380 cd07666 BAR_SNX7 The Bin/Amphi 29.3 1.9E+02 0.004 32.2 7.8 48 866-913 162-209 (243)
381 PF04728 LPP: Lipoprotein leuc 29.3 1.9E+02 0.0042 24.7 6.0 35 866-900 9-43 (56)
382 PF01920 Prefoldin_2: Prefoldi 29.1 88 0.0019 29.4 4.7 49 851-899 52-101 (106)
383 PF06103 DUF948: Bacterial pro 29.0 4.6E+02 0.0099 24.1 10.1 43 868-910 27-69 (90)
384 PRK14146 heat shock protein Gr 29.0 2.4E+02 0.0052 30.8 8.4 56 866-922 60-115 (215)
385 PF06698 DUF1192: Protein of u 28.9 1.3E+02 0.0027 26.1 4.9 24 876-899 23-46 (59)
386 PRK07352 F0F1 ATP synthase sub 28.9 4.1E+02 0.0089 27.7 10.1 42 866-910 59-100 (174)
387 TIGR03185 DNA_S_dndD DNA sulfu 28.4 1.8E+02 0.0038 37.1 8.6 8 1069-1076 628-635 (650)
388 PRK14160 heat shock protein Gr 28.3 3.1E+02 0.0068 29.8 9.1 56 866-922 67-122 (211)
389 PRK05560 DNA gyrase subunit A; 28.1 1.5E+03 0.033 29.8 21.9 119 310-441 544-672 (805)
390 cd00632 Prefoldin_beta Prefold 28.0 1.3E+02 0.0028 28.7 5.6 47 853-899 55-102 (105)
391 PF03920 TLE_N: Groucho/TLE N- 27.9 1E+02 0.0022 30.8 4.8 42 854-895 17-58 (135)
392 PRK14147 heat shock protein Gr 27.9 2.7E+02 0.0058 29.3 8.3 38 866-903 24-61 (172)
393 COG1340 Uncharacterized archae 27.9 3.3E+02 0.0071 31.1 9.4 65 866-935 213-277 (294)
394 COG0525 ValS Valyl-tRNA synthe 27.9 1.1E+02 0.0024 39.9 6.5 66 867-932 807-872 (877)
395 PRK09343 prefoldin subunit bet 27.7 1.4E+02 0.0031 29.3 6.0 48 854-901 64-112 (121)
396 PRK02119 hypothetical protein; 27.7 4.5E+02 0.0098 23.6 8.8 16 916-931 44-59 (73)
397 PRK14158 heat shock protein Gr 27.5 3.9E+02 0.0084 28.7 9.5 56 866-922 46-101 (194)
398 PF13870 DUF4201: Domain of un 27.5 4.6E+02 0.01 27.4 10.2 62 866-927 62-133 (177)
399 TIGR00634 recN DNA repair prot 27.5 1.5E+02 0.0032 37.1 7.5 44 882-929 347-392 (563)
400 PRK08475 F0F1 ATP synthase sub 27.5 5.4E+02 0.012 26.7 10.6 43 866-911 62-104 (167)
401 TIGR01010 BexC_CtrB_KpsE polys 27.4 1.6E+02 0.0036 34.4 7.5 52 883-934 216-267 (362)
402 PF01166 TSC22: TSC-22/dip/bun 27.3 77 0.0017 27.1 3.3 31 866-896 13-43 (59)
403 PF07975 C1_4: TFIIH C1-like d 27.3 16 0.00035 30.4 -0.6 28 661-688 2-35 (51)
404 PF07321 YscO: Type III secret 27.3 5.2E+02 0.011 26.7 10.0 60 866-925 66-128 (152)
405 PF07889 DUF1664: Protein of u 27.3 3.6E+02 0.0079 26.9 8.6 34 877-910 64-100 (126)
406 PRK14145 heat shock protein Gr 27.3 3.8E+02 0.0083 28.8 9.4 57 866-923 51-107 (196)
407 PF07303 Occludin_ELL: Occludi 27.2 1.8E+02 0.004 27.8 6.4 47 866-912 21-69 (101)
408 KOG3564 GTPase-activating prot 27.1 2.8E+02 0.006 33.5 8.9 71 866-936 27-111 (604)
409 PRK01885 greB transcription el 27.1 1.6E+02 0.0034 30.5 6.4 46 889-934 26-72 (157)
410 CHL00019 atpF ATP synthase CF0 27.1 4.4E+02 0.0096 27.7 10.0 43 866-911 64-106 (184)
411 COG3883 Uncharacterized protei 26.9 3.2E+02 0.0069 30.8 9.0 54 867-927 52-105 (265)
412 PF07464 ApoLp-III: Apolipopho 26.9 1.2E+02 0.0025 31.4 5.3 54 876-935 29-82 (155)
413 PF14257 DUF4349: Domain of un 26.8 2.1E+02 0.0045 31.9 7.9 64 866-934 131-194 (262)
414 PRK05759 F0F1 ATP synthase sub 26.8 5E+02 0.011 26.3 10.1 41 866-909 44-84 (156)
415 KOG4552 Vitamin-D-receptor int 26.7 2.9E+02 0.0062 29.7 8.1 41 866-906 73-113 (272)
416 PF07111 HCR: Alpha helical co 26.6 4.1E+02 0.0088 33.8 10.6 62 875-936 163-235 (739)
417 TIGR02338 gimC_beta prefoldin, 26.5 1.6E+02 0.0035 28.3 6.0 48 854-901 60-108 (110)
418 TIGR01461 greB transcription e 26.5 1.3E+02 0.0029 30.9 5.8 55 879-934 13-70 (156)
419 TIGR02169 SMC_prok_A chromosom 26.4 2.5E+02 0.0054 38.1 10.1 8 90-97 23-30 (1164)
420 PRK00736 hypothetical protein; 26.3 2.9E+02 0.0062 24.5 7.0 12 918-929 42-53 (68)
421 PHA03011 hypothetical protein; 26.3 3.6E+02 0.0078 25.6 7.7 53 866-932 63-115 (120)
422 PRK02793 phi X174 lysis protei 26.2 4.8E+02 0.01 23.4 8.9 17 916-932 43-59 (72)
423 COG0172 SerS Seryl-tRNA synthe 26.1 3.6E+02 0.0078 32.5 9.9 33 866-898 28-60 (429)
424 PLN02381 valyl-tRNA synthetase 25.9 92 0.002 42.0 5.6 64 866-929 989-1059(1066)
425 KOG0999 Microtubule-associated 25.8 1.7E+02 0.0037 35.7 7.0 59 858-931 154-229 (772)
426 cd00632 Prefoldin_beta Prefold 25.8 5.5E+02 0.012 24.4 9.5 32 867-898 6-37 (105)
427 PF07295 DUF1451: Protein of u 25.8 1.6E+02 0.0035 30.1 6.1 34 877-910 7-40 (146)
428 PRK14157 heat shock protein Gr 25.8 2.9E+02 0.0064 30.4 8.3 41 866-906 83-123 (227)
429 PF06120 Phage_HK97_TLTM: Tail 25.6 5.1E+02 0.011 29.8 10.6 19 866-884 87-105 (301)
430 COG1196 Smc Chromosome segrega 25.6 2.5E+02 0.0055 38.4 9.8 58 875-932 405-462 (1163)
431 KOG4360 Uncharacterized coiled 25.5 4.1E+02 0.0089 32.4 9.9 46 889-935 241-287 (596)
432 PF10018 Med4: Vitamin-D-recep 25.5 1.6E+02 0.0035 31.3 6.3 40 860-899 12-54 (188)
433 PF13747 DUF4164: Domain of un 25.5 4.5E+02 0.0098 24.5 8.5 15 908-922 73-87 (89)
434 cd01231 PH_Lnk LNK-family Plec 25.5 2.7E+02 0.0058 26.8 6.8 61 53-120 45-106 (107)
435 PF10073 DUF2312: Uncharacteri 25.4 2.6E+02 0.0056 25.3 6.4 48 873-920 3-50 (74)
436 PTZ00464 SNF-7-like protein; P 25.4 4.2E+02 0.0091 28.8 9.5 31 870-900 21-51 (211)
437 PF12352 V-SNARE_C: Snare regi 25.4 2.2E+02 0.0047 24.5 6.1 48 887-934 7-54 (66)
438 PF07926 TPR_MLP1_2: TPR/MLP1/ 25.4 5E+02 0.011 25.9 9.5 55 869-923 19-73 (132)
439 PF11382 DUF3186: Protein of u 25.4 1.6E+02 0.0034 34.0 6.6 29 871-899 36-64 (308)
440 KOG2106 Uncharacterized conser 25.3 1.3E+03 0.029 28.3 16.5 61 359-439 214-275 (626)
441 KOG0250 DNA repair protein RAD 25.3 2.6E+02 0.0057 37.1 9.0 65 860-924 741-805 (1074)
442 PF04568 IATP: Mitochondrial A 25.2 1.3E+02 0.0029 28.7 5.0 25 874-898 72-100 (100)
443 KOG0804 Cytoplasmic Zn-finger 25.2 3.3E+02 0.0072 32.7 9.0 19 911-929 430-448 (493)
444 PF03961 DUF342: Protein of un 25.1 1.9E+02 0.0041 35.1 7.7 9 1025-1033 420-428 (451)
445 PF10267 Tmemb_cc2: Predicted 25.0 5.3E+02 0.012 30.8 11.0 33 866-898 211-243 (395)
446 KOG0239 Kinesin (KAR3 subfamil 25.0 3.4E+02 0.0074 34.8 10.0 42 866-907 240-281 (670)
447 TIGR02169 SMC_prok_A chromosom 24.9 2.8E+02 0.006 37.6 10.1 9 1032-1040 1059-1067(1164)
448 PF00170 bZIP_1: bZIP transcri 24.9 2.1E+02 0.0045 24.7 5.8 33 866-898 25-57 (64)
449 PRK12704 phosphodiesterase; Pr 24.8 2.2E+02 0.0047 35.4 8.1 14 896-909 143-156 (520)
450 PF00170 bZIP_1: bZIP transcri 24.7 1.8E+02 0.004 25.0 5.5 25 875-899 27-51 (64)
451 PF06103 DUF948: Bacterial pro 24.7 5.5E+02 0.012 23.5 9.1 18 875-892 48-65 (90)
452 PRK06746 peptide chain release 24.7 4E+02 0.0087 30.9 9.6 63 866-936 17-82 (326)
453 PF09730 BicD: Microtubule-ass 24.7 4.3E+02 0.0094 34.0 10.7 57 866-929 264-320 (717)
454 PF03885 DUF327: Protein of un 24.6 3.4E+02 0.0073 27.7 8.2 84 852-935 27-124 (147)
455 PF03357 Snf7: Snf7; InterPro 24.6 4.2E+02 0.0092 26.9 9.3 34 869-902 3-36 (171)
456 PF13094 CENP-Q: CENP-Q, a CEN 24.5 4.8E+02 0.01 26.7 9.5 60 866-932 26-85 (160)
457 PRK13455 F0F1 ATP synthase sub 24.4 5.2E+02 0.011 27.2 9.9 41 866-909 67-107 (184)
458 cd07612 BAR_Bin2 The Bin/Amphi 24.3 1.9E+02 0.0041 31.5 6.5 29 900-934 140-168 (211)
459 PRK06569 F0F1 ATP synthase sub 24.3 7E+02 0.015 25.9 10.3 21 866-886 50-70 (155)
460 KOG0291 WD40-repeat-containing 24.3 1.6E+03 0.036 29.0 24.1 123 414-557 300-424 (893)
461 PF00015 MCPsignal: Methyl-acc 24.2 3E+02 0.0064 29.0 8.2 27 866-892 81-107 (213)
462 COG5490 Uncharacterized conser 24.2 4.1E+02 0.0089 27.0 8.2 40 893-933 114-155 (158)
463 PRK13460 F0F1 ATP synthase sub 23.9 5.8E+02 0.013 26.5 10.1 42 866-910 56-97 (173)
464 COG1196 Smc Chromosome segrega 23.7 3.2E+02 0.007 37.4 10.2 8 1035-1042 1066-1073(1163)
465 PF00804 Syntaxin: Syntaxin; 23.7 2.7E+02 0.0059 25.5 7.0 15 868-882 8-22 (103)
466 PF00015 MCPsignal: Methyl-acc 23.7 6.5E+02 0.014 26.3 10.8 38 896-933 167-204 (213)
467 PRK00295 hypothetical protein; 23.6 3.5E+02 0.0076 23.9 7.0 47 872-932 3-49 (68)
468 PRK10698 phage shock protein P 23.6 2.6E+02 0.0055 30.7 7.6 35 866-900 98-132 (222)
469 PF05529 Bap31: B-cell recepto 23.6 3.7E+02 0.0079 28.5 8.7 52 876-927 120-172 (192)
470 TIGR00293 prefoldin, archaeal 23.6 2.6E+02 0.0057 27.3 7.1 35 866-901 5-39 (126)
471 PRK07353 F0F1 ATP synthase sub 23.5 6.6E+02 0.014 24.9 10.1 42 866-910 45-86 (140)
472 PF07716 bZIP_2: Basic region 23.5 1.9E+02 0.0041 24.1 5.1 30 866-895 24-53 (54)
473 PF09006 Surfac_D-trimer: Lung 23.5 1.3E+02 0.0028 24.6 3.7 22 876-897 1-22 (46)
474 cd07599 BAR_Rvs167p The Bin/Am 23.4 1.9E+02 0.0042 31.2 6.6 18 910-927 157-174 (216)
475 cd01225 PH_Cool_Pix Cool (clon 23.3 4.9E+02 0.011 25.4 8.4 81 32-122 23-109 (111)
476 KOG0996 Structural maintenance 23.3 2.8E+02 0.006 37.1 8.7 62 875-936 508-569 (1293)
477 TIGR02658 TTQ_MADH_Hv methylam 23.3 1.3E+03 0.027 27.2 25.9 75 307-384 40-125 (352)
478 smart00787 Spc7 Spc7 kinetocho 23.2 4.2E+02 0.009 30.6 9.5 22 878-899 208-229 (312)
479 PF13600 DUF4140: N-terminal d 23.2 1.6E+02 0.0035 27.8 5.3 33 866-898 69-101 (104)
480 PF10046 BLOC1_2: Biogenesis o 23.1 3.3E+02 0.0072 25.8 7.3 23 867-889 35-57 (99)
481 PHA01754 hypothetical protein 23.0 91 0.002 26.7 3.0 25 898-922 24-54 (69)
482 TIGR01843 type_I_hlyD type I s 23.0 3.6E+02 0.0079 31.8 9.5 20 915-934 245-264 (423)
483 TIGR02977 phageshock_pspA phag 23.0 2.7E+02 0.0057 30.3 7.6 35 866-900 98-132 (219)
484 PRK02793 phi X174 lysis protei 23.0 3.6E+02 0.0078 24.1 7.0 47 874-934 8-54 (72)
485 KOG2164 Predicted E3 ubiquitin 22.8 37 0.00081 40.9 1.0 52 658-718 186-237 (513)
486 KOG2911 Uncharacterized conser 22.8 3.9E+02 0.0085 32.0 9.1 25 868-892 241-265 (439)
487 TIGR02894 DNA_bind_RsfA transc 22.8 3.4E+02 0.0073 28.2 7.6 33 866-898 103-135 (161)
488 COG2433 Uncharacterized conser 22.7 2E+02 0.0044 35.7 7.0 24 582-605 246-270 (652)
489 PF04899 MbeD_MobD: MbeD/MobD 22.7 5.6E+02 0.012 22.9 8.9 59 871-932 7-65 (70)
490 cd07588 BAR_Amphiphysin The Bi 22.6 1.8E+02 0.004 31.5 6.2 21 911-934 148-168 (211)
491 PRK14127 cell division protein 22.5 1.8E+02 0.0038 28.4 5.3 45 855-899 24-69 (109)
492 PF12341 DUF3639: Protein of u 22.4 1.8E+02 0.0039 21.1 4.0 25 579-603 1-25 (27)
493 PF04841 Vps16_N: Vps16, N-ter 22.3 1.4E+03 0.03 27.3 18.0 26 580-605 217-244 (410)
494 PRK14149 heat shock protein Gr 22.3 4.2E+02 0.0091 28.4 8.6 38 866-903 42-79 (191)
495 PF07798 DUF1640: Protein of u 22.2 2.7E+02 0.0059 29.2 7.2 15 870-884 76-90 (177)
496 PF10883 DUF2681: Protein of u 22.2 2E+02 0.0043 26.9 5.3 31 869-899 25-55 (87)
497 PRK14473 F0F1 ATP synthase sub 22.2 6.7E+02 0.014 25.8 10.1 40 866-908 48-87 (164)
498 PF07926 TPR_MLP1_2: TPR/MLP1/ 22.1 7.5E+02 0.016 24.6 10.0 39 888-926 31-69 (132)
499 PF04201 TPD52: Tumour protein 22.0 2.6E+02 0.0056 29.1 6.6 32 866-897 35-66 (162)
500 KOG3229 Vacuolar sorting prote 22.0 5.2E+02 0.011 27.9 8.9 65 840-920 3-70 (227)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=9e-46 Score=415.61 Aligned_cols=364 Identities=26% Similarity=0.454 Sum_probs=296.4
Q ss_pred cccCCCCcEEEEcCCCCCcccCCCCCcCCccccccccccceEEeccc--CCCCEEEEEecCceEEEEEcCCeEEEEeCCC
Q 001361 256 DDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESA--VVLDVQNIACGGRHAALVTKQGEVFSWGEEL 333 (1092)
Q Consensus 256 ~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~--~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~ 333 (1092)
.....-.+||+||.|. .++||+|.+. ..+..|..+... ....|++++||+.|+++|+.||.||+||.|.
T Consensus 62 ~~~~~~~~v~~~Gsn~-~~eLGlg~de--------~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~ 132 (476)
T COG5184 62 HLLVKMASVYSWGSNG-MNELGLGNDE--------TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDND 132 (476)
T ss_pred hhhhheeeeEEEecCc-ceeeccCCch--------hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCc
Confidence 3567889999999999 9999999863 335788877765 5578999999999999999999999999999
Q ss_pred CCccCCCCC----------------CCCCcceEeec----cCCCcEEEEEeCCCeEEEEEeCCcEEEeCCccCCCCccCC
Q 001361 334 GGRLGHGVD----------------SDVSHPKLIDA----LKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGH 393 (1092)
Q Consensus 334 ~GqLG~g~~----------------~~~~~P~~V~~----l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~ 393 (1092)
.|+||.... .....|..|+. ....+|++++||++++++|+++|+||.||.+ ..+.++.
T Consensus 133 ~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~--r~~e~~~ 210 (476)
T COG5184 133 DGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTF--RCGELGQ 210 (476)
T ss_pred ccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCc--ccccccc
Confidence 999998761 12567877775 2334899999999999999999999999998 5566666
Q ss_pred CCCc--c----eecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCC-eE
Q 001361 394 GNEM--S----LWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGL-RT 466 (1092)
Q Consensus 394 g~~~--~----~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~-~I 466 (1092)
+... . .++|.++. ...|++++.|.+|.++|+++|+||+||+|.+||||.........+..+..+... .|
T Consensus 211 g~~~~s~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i 286 (476)
T COG5184 211 GSYKNSQKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNI 286 (476)
T ss_pred ccccccccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhh
Confidence 5322 2 24444443 357999999999999999999999999999999999887777666666544333 36
Q ss_pred EEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCC----CcceeeEEecccCCCCeEEEEeeCcEEEE
Q 001361 467 VRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDK----EARLVPTCVAALVEPNFCQVSCGHSLTVA 542 (1092)
Q Consensus 467 ~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~----~~~~~P~~V~~l~~~~I~~Ia~G~~htla 542 (1092)
..|+||.+|++||. .+|++|+||.|.+||||.+.. .....|+....+....|..|++|..|+++
T Consensus 287 ~~vacG~~h~~al~------------~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~ 354 (476)
T COG5184 287 KYVACGKDHSLALD------------EDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLI 354 (476)
T ss_pred hhcccCcceEEEEc------------CCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEE
Confidence 88999999999998 599999999999999999821 12345666666777789999999999999
Q ss_pred EecCCcEEEEeCCCCCCCCCCCCCC---ccceeeccccCCCCEEEEEEcCCEEEEEEcCCeEEEEeCCCCCCCCCCCC-C
Q 001361 543 LTTTGHVYTMGSPVYGQLGDPKANG---KLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDT-D 618 (1092)
Q Consensus 543 Lt~dG~Vy~wG~N~~GQLG~~~~~~---~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG~Vy~WG~n~~GQLG~G~~-~ 618 (1092)
|..+|.||.||.+..||||.+.... ..|..+.. ...+.+|+||..|.++.+.+|+||.||.|.+|+||.|+. +
T Consensus 355 L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~---~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~ 431 (476)
T COG5184 355 LRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSV---AIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEA 431 (476)
T ss_pred EecCceEEEecCCccccccCcccceeecCCcccccc---ccceEEEEecCccceeeccCCceEEecCchhhhccCCchhh
Confidence 9999999999999999999987332 22332221 346999999999999999999999999999999999984 5
Q ss_pred CcccCceeee--ccCCceeeEEecCCcceeeee
Q 001361 619 DRNFPSLVEA--LKDKQVKSIVCGTSFTAAICL 649 (1092)
Q Consensus 619 ~~~~P~~V~~--l~~~~V~~IacG~~~T~al~~ 649 (1092)
+...|+++.. +....++..-||.+++++.-.
T Consensus 432 ~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~ 464 (476)
T COG5184 432 DVLVPTLIRQPLLSGHNIILAGYGNQFSVIEET 464 (476)
T ss_pred hccccccccccccCCCceEEeccCcceEEEecc
Confidence 6678888873 667778888788777766554
No 2
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.8e-40 Score=349.40 Aligned_cols=362 Identities=24% Similarity=0.439 Sum_probs=304.5
Q ss_pred CCCCcEEEEcCCCCCcccCCCCCcCCccccccccccceEEecccCCCCEEEEEec--CceEEEEEcCCeEEEEeCCCCCc
Q 001361 259 DSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACG--GRHAALVTKQGEVFSWGEELGGR 336 (1092)
Q Consensus 259 ~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G--~~hs~~Lt~dG~Vy~wG~N~~Gq 336 (1092)
...|++...|... -.+.|.-+- ........|.++..+...+|+-|+.| ..|+++|+-+|+.|+||.|..||
T Consensus 17 ~~~g~ml~~g~v~-wd~tgkRd~------~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQ 89 (443)
T KOG1427|consen 17 EKGGEMLFCGAVA-WDITGKRDG------AMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQ 89 (443)
T ss_pred cCCccEEEeccch-hhhhccccc------ccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCc
Confidence 4558888888876 444444321 11235678899988888999999977 67999999999999999999999
Q ss_pred cCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCccCCCCccCCCCCcc-eecceeecCCCCCCcEE
Q 001361 337 LGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMS-LWLPKKLNGPLEGIHVS 415 (1092)
Q Consensus 337 LG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~-~~~P~~v~~~l~~~~I~ 415 (1092)
||+++......|+.|..|...+|++.+||++|+++||++|.||.||.| .+||||.++... ...|..+. ..+..|+
T Consensus 90 LGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeN--K~GQlGlgn~~~~v~s~~~~~--~~~~~v~ 165 (443)
T KOG1427|consen 90 LGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGEN--KYGQLGLGNAKNEVESTPLPC--VVSDEVT 165 (443)
T ss_pred cCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccc--ccccccccccccccccCCCcc--ccCccce
Confidence 999988899999999999999999999999999999999999999999 899999998754 22232221 2345799
Q ss_pred EEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCc--------------ccccceeeecCCCCeEEEEecCCceEEEEEE
Q 001361 416 SVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRI--------------SVSTPREVDSLKGLRTVRAACGVWHTAAVVE 481 (1092)
Q Consensus 416 ~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~--------------~~~~P~~V~~l~~~~I~~VacG~~ht~aLte 481 (1092)
.|+||..+++.|+..+.|.++|...||||||+... ....|..|..+.+..|++++||.+||+++.
T Consensus 166 ~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd- 244 (443)
T KOG1427|consen 166 NVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVD- 244 (443)
T ss_pred eeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeec-
Confidence 99999999999999999999999999999998432 234577788899999999999999999997
Q ss_pred eeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCC--CCeEEEEeeCcEEEEEecCCcEEEEeCCCCCC
Q 001361 482 VMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVE--PNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQ 559 (1092)
Q Consensus 482 ~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~--~~I~~Ia~G~~htlaLt~dG~Vy~wG~N~~GQ 559 (1092)
+++.||+||-+-||+|||....+..+|..+..+.- .--.++.||+..++++.+-|.||.||.+..
T Consensus 245 -----------~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~-- 311 (443)
T KOG1427|consen 245 -----------KNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN-- 311 (443)
T ss_pred -----------CCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc--
Confidence 69999999999999999999999999998876533 335688999999999999999999997643
Q ss_pred CCCCCCCCccceeeccccCCCCEEEEEEcCCEEEEEEcCCeEEEEeCCCCCCCCCCC--CCCcccCceeeeccCCceeeE
Q 001361 560 LGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGD--TDDRNFPSLVEALKDKQVKSI 637 (1092)
Q Consensus 560 LG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG~Vy~WG~n~~GQLG~G~--~~~~~~P~~V~~l~~~~V~~I 637 (1092)
...+-.+|.++.+ +.+..+..+-||..|.++ ..|..+..||...+|.++-|. +.....|..|..+.+.+|..|
T Consensus 312 ---~ge~~mypkP~~d-lsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~V 386 (443)
T KOG1427|consen 312 ---NGEDWMYPKPMMD-LSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGV 386 (443)
T ss_pred ---CcccccCCCchhh-cCCccCCCcCccceeeee-cccccccccccccccccccCccccccccCccccchhcceeccce
Confidence 3344567877775 788899999999999865 577789999998887766554 456678999999999999999
Q ss_pred EecCCcceeeeee
Q 001361 638 VCGTSFTAAICLH 650 (1092)
Q Consensus 638 acG~~~T~al~~~ 650 (1092)
+||..||++|...
T Consensus 387 amGysHs~vivd~ 399 (443)
T KOG1427|consen 387 AMGYSHSMVIVDR 399 (443)
T ss_pred eeccceEEEEEcc
Confidence 9999999999843
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=3.5e-39 Score=362.58 Aligned_cols=317 Identities=26% Similarity=0.494 Sum_probs=260.4
Q ss_pred CceEEEEEcCCeEEEEeCCCCCccCCCCCCCC-CcceEeecc--CCCcEEEEEeCCCeEEEEEeCCcEEEeCCccCCCCc
Q 001361 314 GRHAALVTKQGEVFSWGEELGGRLGHGVDSDV-SHPKLIDAL--KNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGL 390 (1092)
Q Consensus 314 ~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~-~~P~~V~~l--~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~Gq 390 (1092)
..|..+++.-+.||+||.|..++||.+.+... ..|++.... +...|++++||..|+++|++||+||+||.| ..|+
T Consensus 58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N--~~G~ 135 (476)
T COG5184 58 NKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDN--DDGA 135 (476)
T ss_pred ccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccC--cccc
Confidence 36666889999999999999999999987765 889998876 667899999999999999999999999999 8899
Q ss_pred cCCCCC----------------cceecceeecC---CCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCcc
Q 001361 391 LGHGNE----------------MSLWLPKKLNG---PLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRIS 451 (1092)
Q Consensus 391 LG~g~~----------------~~~~~P~~v~~---~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~ 451 (1092)
||.... .....|.++.. .....+|++++||++++++|+++|.||.||....+.++.+...+
T Consensus 136 Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~ 215 (476)
T COG5184 136 LGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKN 215 (476)
T ss_pred cccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccc
Confidence 998661 12457777765 22244899999999999999999999999999888888884443
Q ss_pred ccc----ceeeecCCCCeEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEeccc-C
Q 001361 452 VST----PREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAAL-V 526 (1092)
Q Consensus 452 ~~~----P~~V~~l~~~~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l-~ 526 (1092)
... +.++... ...|+++++|..|.++++ ++|++|+||+|.+||||....+....+..+..+ .
T Consensus 216 s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt------------~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~ 282 (476)
T COG5184 216 SQKTSIQFTPLKVP-KKAIVQLAAGADHLIALT------------NEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFA 282 (476)
T ss_pred cccceeeeeeeecC-chheeeeccCCceEEEEe------------cCCcEEEecCCcccccCCchhhhcccccccCChhh
Confidence 222 2233222 457999999999999998 699999999999999999887766555555432 2
Q ss_pred CCCeEEEEeeCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCc------cceeeccccCCCCEEEEEEcCCEEEEEEcCCe
Q 001361 527 EPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANGK------LPTRVEGKLTKNFVEEIACGDYHVAVLTSRTE 600 (1092)
Q Consensus 527 ~~~I~~Ia~G~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~~------~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG~ 600 (1092)
-..|..|+||.+|++||+++|+||+||.|.+||||.+ .+.. .|.... .+.+..|..|++|..|+++|..+|.
T Consensus 283 i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~-~~~~~~a~~tk~~~~~-~~~~~~i~~is~ge~H~l~L~~~G~ 360 (476)
T COG5184 283 IRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAG-SDGEIGALTTKPNYKQ-LLSGVTICSISAGESHSLILRKDGT 360 (476)
T ss_pred hhhhhhcccCcceEEEEcCCCeEEEeccchhcccccC-cccccceeeccccccc-cCCCceEEEEecCcceEEEEecCce
Confidence 2457899999999999999999999999999999998 4333 233322 3455569999999999999999999
Q ss_pred EEEEeCCCCCCCCCCC--CCCcccCceeeeccCCceeeEEecCCcceeeee
Q 001361 601 VYTWGKGANGRLGHGD--TDDRNFPSLVEALKDKQVKSIVCGTSFTAAICL 649 (1092)
Q Consensus 601 Vy~WG~n~~GQLG~G~--~~~~~~P~~V~~l~~~~V~~IacG~~~T~al~~ 649 (1092)
||.||++..||||+.+ +.+...|+.+... .++.+|+||..|+++.+.
T Consensus 361 l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~ 409 (476)
T COG5184 361 LYAFGRGDRGQLGIQEEITIDVSTPTKLSVA--IKLEQVACGTHHNIARTD 409 (476)
T ss_pred EEEecCCccccccCcccceeecCCccccccc--cceEEEEecCccceeecc
Confidence 9999999999999998 5566666666533 369999999999999884
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.5e-35 Score=312.38 Aligned_cols=309 Identities=26% Similarity=0.434 Sum_probs=258.5
Q ss_pred cccCCCCcEEEEcCCCCCcccCCCCCcCCccccccccccceEEecccCCCCEEEEEecCceEEEEEcCCeEEEEeCCCCC
Q 001361 256 DDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFSWGEELGG 335 (1092)
Q Consensus 256 ~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~G 335 (1092)
..|+-+|+.|.||.|. .||||+|+. .....|+.|+.+...+|++-+||.+|+++||++|.||.||.|.+|
T Consensus 71 vli~megk~~~wGRNe-kGQLGhgD~---------k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~G 140 (443)
T KOG1427|consen 71 VLIDMEGKCYTWGRNE-KGQLGHGDM---------KQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYG 140 (443)
T ss_pred EEEecccceeecccCc-cCccCccch---------hhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccc
Confidence 4889999999999999 999999974 456789999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC-CCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCccCCCCccCCCCCcce--------------e
Q 001361 336 RLGHGVDSD-VSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSL--------------W 400 (1092)
Q Consensus 336 qLG~g~~~~-~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~--------------~ 400 (1092)
|||++.... +..|.++. .....|..|+||..+++.|+..+.|.++|.- .|||||++++... .
T Consensus 141 QlGlgn~~~~v~s~~~~~-~~~~~v~~v~cga~ftv~l~~~~si~t~glp--~ygqlgh~td~~~~~~~~~~~~~~e~~p 217 (443)
T KOG1427|consen 141 QLGLGNAKNEVESTPLPC-VVSDEVTNVACGADFTVWLSSTESILTAGLP--QYGQLGHGTDNEFNMKDSSVRLAYEAQP 217 (443)
T ss_pred cccccccccccccCCCcc-ccCccceeeccccceEEEeecccceeecCCc--cccccccCcchhhccccccceeeeecCC
Confidence 999998654 44444443 3345799999999999999999999999999 8999999976431 2
Q ss_pred cceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecC--CCCeEEEEecCCceEEE
Q 001361 401 LPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSL--KGLRTVRAACGVWHTAA 478 (1092)
Q Consensus 401 ~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l--~~~~I~~VacG~~ht~a 478 (1092)
.|..|. ++++++|++++||.+|++++++++.||+||.+-||.|||........|+.|+.+ .+.--..+.||+..+++
T Consensus 218 r~~~i~-~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~ 296 (443)
T KOG1427|consen 218 RPKAIA-SLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLN 296 (443)
T ss_pred Cccccc-cccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeeccccee
Confidence 233333 478899999999999999999999999999999999999999999999988755 34446788999999999
Q ss_pred EEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCcEEEEEecCCcEEEEeCCCCC
Q 001361 479 VVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYG 558 (1092)
Q Consensus 479 Lte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLt~dG~Vy~wG~N~~G 558 (1092)
+.| -|.||.||.+.. +.+....|..+..+.+.++..+-||..|.+ +..+..+..||...+|
T Consensus 297 v~e------------~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~-v~ad~s~i~wg~~~~g 357 (443)
T KOG1427|consen 297 VAE------------GGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHF-VGADSSCISWGHAQYG 357 (443)
T ss_pred ecc------------cceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeee-eccccccccccccccc
Confidence 874 899999998764 235566788888899999999999988765 5566689999998887
Q ss_pred CCCCC-CC--CCccceeeccccCCCCEEEEEEcCCEEEEEEcC
Q 001361 559 QLGDP-KA--NGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSR 598 (1092)
Q Consensus 559 QLG~~-~~--~~~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~d 598 (1092)
.++-+ +. ....|..+. .+.+.+|.+|+||..|+++|..+
T Consensus 358 ~~lggp~~Qkss~~Pk~v~-~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 358 ELLGGPNGQKSSAAPKKVD-MLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred ccccCccccccccCccccc-hhcceeccceeeccceEEEEEcc
Confidence 66543 32 234676666 47788899999999999999755
No 5
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=99.97 E-value=2.4e-31 Score=218.09 Aligned_cols=59 Identities=69% Similarity=1.207 Sum_probs=57.5
Q ss_pred CCCCceeeeeccceEEEEEEcCCCccceeEEEeeccccCHHHHHHHHHHhHhhhHhhcc
Q 001361 1016 AQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFSEKQAEQWWAANRARVYQQYN 1074 (1092)
Q Consensus 1016 ~~~~~~~~~~epgv~~t~~~~~~g~~~~~rv~f~~~~f~~~~a~~ww~~n~~~~~~~~~ 1074 (1092)
++++|||||+||||||||+++|||+++||||||||++|+|+||+.||+||++|||++||
T Consensus 1 q~~~Ewveq~EpGVyiTl~~~p~G~~~LkRVRFSR~~F~e~qA~~WW~eN~~rv~e~Yn 59 (59)
T PF08381_consen 1 QEEKEWVEQDEPGVYITLVSLPDGGNDLKRVRFSRERFSEWQAERWWEENRDRVYEKYN 59 (59)
T ss_pred CCCccEEEeeCCeeEEEEEECCCCCeeEEEEEEhhhhcCHHHHHHHHHHHHHHHHHhcC
Confidence 46889999999999999999999999999999999999999999999999999999997
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=4e-26 Score=265.36 Aligned_cols=305 Identities=22% Similarity=0.299 Sum_probs=232.0
Q ss_pred cccCCCCcEEEEcCCCCCcccCCCCCcCCccccccccccceEEeccc--CCCCEEEEEecCceEEEEEcCCeEEEEeCCC
Q 001361 256 DDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESA--VVLDVQNIACGGRHAALVTKQGEVFSWGEEL 333 (1092)
Q Consensus 256 ~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~--~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~ 333 (1092)
.++|...|||+||.|. +..||.|+. .....|..|..+ .++-+.+|+.+..|++++++.|+||++|.+.
T Consensus 136 ~~~d~pndvy~wG~N~-N~tLGign~---------~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~ 205 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNV-NNTLGIGNG---------KEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGA 205 (1267)
T ss_pred cccCCccceeEecccc-cccccccCC---------CCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCC
Confidence 4578889999999999 999999985 445677777654 3456789999999999999999999999999
Q ss_pred CCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCccCCCCccCCCCCcc-eecceeecCC-CCC
Q 001361 334 GGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMS-LWLPKKLNGP-LEG 411 (1092)
Q Consensus 334 ~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~-~~~P~~v~~~-l~~ 411 (1092)
+|+||+|+......|++|+.|.+.+|.+|+....|+++||++|-||+||.| ..+|||..+... ...|..|... +.+
T Consensus 206 GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN--~~hqLG~~~~~~~~~~p~qI~a~r~kg 283 (1267)
T KOG0783|consen 206 GGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLN--GSHQLGLSNDELKKDDPIQITARRIKG 283 (1267)
T ss_pred CCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecC--cccccCCcCchhhcCchhhhhhHhhcc
Confidence 999999999999999999999999999999999999999999999999999 899999987643 3345444321 223
Q ss_pred C-cEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCc-ccccceeeecCCCCeEEEEecCCceEEEEEEeeecCCCC
Q 001361 412 I-HVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRI-SVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSS 489 (1092)
Q Consensus 412 ~-~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~-~~~~P~~V~~l~~~~I~~VacG~~ht~aLte~~~~~s~~ 489 (1092)
. .|+.|++|..|+++.|+. .||+||.| .||||..+.. .+..|+.+.. ....|..|+|....|+++++
T Consensus 284 ~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~-------- 352 (1267)
T KOG0783|consen 284 FKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQ-------- 352 (1267)
T ss_pred hhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEec--------
Confidence 2 799999999999999876 79999998 6999987654 5667866633 23479999999999999984
Q ss_pred ccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecc----cCCCCeEEEEeeCcEEEEEecCCcEEEEeCCCCCCCCCCCC
Q 001361 490 SNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAA----LVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKA 565 (1092)
Q Consensus 490 ~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~----l~~~~I~~Ia~G~~htlaLt~dG~Vy~wG~N~~GQLG~~~~ 565 (1092)
++.+|++-+- .|.-...+...+.-..|.. +.-.++.+..+...--++||+-|+||.|-++..- +- .
T Consensus 353 ----~~~i~~~ady--~~~k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~-~~---~ 422 (1267)
T KOG0783|consen 353 ----NNSIIAFADY--NQVKLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST-RT---S 422 (1267)
T ss_pred ----CCcEEEEecc--cceecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc-ee---e
Confidence 8888888653 3322222222222222221 1113455666677778999999999999865431 10 0
Q ss_pred CCccceeeccccCCCCEEEEEEcCCEEEEEEcCC
Q 001361 566 NGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRT 599 (1092)
Q Consensus 566 ~~~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG 599 (1092)
-...|.++ ..|.+|+--.+..+++|.||
T Consensus 423 c~ftp~r~------~~isdIa~~~N~~~~~t~dG 450 (1267)
T KOG0783|consen 423 CKFTPLRI------FEISDIAWTANSLILCTRDG 450 (1267)
T ss_pred eeccccee------eehhhhhhccceEEEEecCc
Confidence 01123222 34678888889999999999
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.92 E-value=2.4e-25 Score=258.96 Aligned_cols=270 Identities=25% Similarity=0.420 Sum_probs=217.4
Q ss_pred EEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccC--CCcEEEEEeCCCeEEEEEeCCcEEEeCCccCCCCccCCCCC
Q 001361 319 LVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALK--NINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNE 396 (1092)
Q Consensus 319 ~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~--~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~ 396 (1092)
+++...+||+||.|.+..||+|.......|..|..+. +.-+.+|+.+.+|+++|++.|+||++|.+ ..|.||+|+.
T Consensus 137 ~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG--~GGRlG~gde 214 (1267)
T KOG0783|consen 137 VLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHG--AGGRLGFGDE 214 (1267)
T ss_pred ccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccC--CCCccCcCcc
Confidence 4567799999999999999999999999999999775 45578899999999999999999999999 8899999999
Q ss_pred cceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCc-ccccceeeec--CCCC-eEEEEecC
Q 001361 397 MSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRI-SVSTPREVDS--LKGL-RTVRAACG 472 (1092)
Q Consensus 397 ~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~-~~~~P~~V~~--l~~~-~I~~VacG 472 (1092)
...+.|++|.+ +.+.+|.+|+....|+++||.+|-||+||.|.++|||..+.. ....|.+|.. +.+. .|+.|++|
T Consensus 215 q~~~iPkrV~g-L~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg 293 (1267)
T KOG0783|consen 215 QYNFIPKRVPG-LIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAG 293 (1267)
T ss_pred ccccccccccc-ccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcc
Confidence 99999999998 678899999999999999999999999999999999987543 4556666653 2343 69999999
Q ss_pred CceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCc-ceeeEEecccCCCCeEEEEeeCcEEEEEecCCcEEE
Q 001361 473 VWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEA-RLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYT 551 (1092)
Q Consensus 473 ~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~-~~~P~~V~~l~~~~I~~Ia~G~~htlaLt~dG~Vy~ 551 (1092)
..|+++.+ +..||+||.| .||||..+... ..+|..+. .....|..|+|....|++++++|.+|+
T Consensus 294 ~~hsVawt-------------~~~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~-~~~~~v~~v~a~~~ATVc~~~~~~i~~ 358 (1267)
T KOG0783|consen 294 KSHSVAWT-------------DTDVYSWGLN-NGQLGISDNISVVTTPRRLA-GLLSPVIHVVATTRATVCLLQNNSIIA 358 (1267)
T ss_pred cceeeeee-------------cceEEEeccc-CceecCCCCCceeecchhhc-ccccceEEEEecCccEEEEecCCcEEE
Confidence 99999997 7899999997 49999887644 45675553 234679999999999999999999999
Q ss_pred EeCCCCCCCCCCCCCC-ccceeecc-ccC--CCCEEEEEEcCCEEEEEEcCCeEEEEeCCC
Q 001361 552 MGSPVYGQLGDPKANG-KLPTRVEG-KLT--KNFVEEIACGDYHVAVLTSRTEVYTWGKGA 608 (1092)
Q Consensus 552 wG~N~~GQLG~~~~~~-~~P~~v~~-~l~--~~~I~~Ia~G~~HslaLT~dG~Vy~WG~n~ 608 (1092)
+-+- .|.-.+.... ..-..|.+ .+. ...+.+..+...-.++||+-|+||.|-.+.
T Consensus 359 ~ady--~~~k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 359 FADY--NQVKLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred Eecc--cceecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCC
Confidence 8753 3333222111 11122221 121 233566677777889999999999998653
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.85 E-value=3.9e-20 Score=220.90 Aligned_cols=344 Identities=22% Similarity=0.291 Sum_probs=219.8
Q ss_pred CCCCcEEEEcCCCCCcccCCCCCcCCccccccccccceEEecccCCCCEEEEEecCceEEEE--EcCCeEEEEeCCCCCc
Q 001361 259 DSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALV--TKQGEVFSWGEELGGR 336 (1092)
Q Consensus 259 ~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~L--t~dG~Vy~wG~N~~Gq 336 (1092)
+.+|+||.-|.....|..-.|. ....+|. .-+|++|+.|-+...++ ..+|-++.-|... .
T Consensus 495 a~sGKvYYaGn~t~~Gl~e~G~----------nWmEL~l------~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k--~ 556 (3738)
T KOG1428|consen 495 ARSGKVYYAGNGTRFGLFETGN----------NWMELCL------PEPIVQISVGIDTIMFRSGAGHGWIASVDDKK--R 556 (3738)
T ss_pred hcCccEEEecCccEEeEEccCC----------ceEEecC------CCceEEEEeccchhheeeccCcceEEeccCcc--c
Confidence 5789999999987445444442 2222222 23789999997665554 4566666666322 1
Q ss_pred cCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCccCCCCccCCCCCcceecceeecCCCCCCcEEE
Q 001361 337 LGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSS 416 (1092)
Q Consensus 337 LG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~ 416 (1092)
....+++......+|+.|.+...-.-++.++|++|..|... ........+...+++.-|.+
T Consensus 557 --------~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~t-----------m~~n~SSqmln~L~~~~iss 617 (3738)
T KOG1428|consen 557 --------NGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHT-----------MRVNVSSQMLNGLDNVMISS 617 (3738)
T ss_pred --------ccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeeccee-----------EEecchHHHhhccccceeeh
Confidence 11112222223356777766555556789999999998551 11111122223477888999
Q ss_pred EEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCc-ccccceee-------------ecCCCCeEEEEecCCceEEEEEEe
Q 001361 417 VSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRI-SVSTPREV-------------DSLKGLRTVRAACGVWHTAAVVEV 482 (1092)
Q Consensus 417 IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~-~~~~P~~V-------------~~l~~~~I~~VacG~~ht~aLte~ 482 (1092)
++.|..|+++++.+|.||+||-|..+|+|.-... ....|..- ..+.....+...||.-...-+.
T Consensus 618 lAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~Gva-- 695 (3738)
T KOG1428|consen 618 LALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVA-- 695 (3738)
T ss_pred hhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccc--
Confidence 9999999999999999999999999999974322 11222211 1122222333344432222111
Q ss_pred eecCCCCccCCCCeEEEecCCCCCCcCCC--------C-------------------CCcceeeEEecc---cCCCCeEE
Q 001361 483 MVGSSSSSNCSSGKLFTWGDGDRGRLGHG--------D-------------------KEARLVPTCVAA---LVEPNFCQ 532 (1092)
Q Consensus 483 ~~~~s~~~~~~~G~ly~WG~n~~GQLG~g--------~-------------------~~~~~~P~~V~~---l~~~~I~~ 532 (1092)
....--..|.+-.+|.+..+.|--| . ....+.|..|.. ..+.++.+
T Consensus 696 ----C~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~s 771 (3738)
T KOG1428|consen 696 ----CGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSS 771 (3738)
T ss_pred ----cccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEE
Confidence 0111223677777776665543211 0 001123333322 23457899
Q ss_pred EEeeCcEEEEEecCCcEEEEeCCCCCCCCCCCCCC-ccceeeccccCCCCEEEEEEcCCEEEEEEcCCeEEEEeCCCCCC
Q 001361 533 VSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANG-KLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGR 611 (1092)
Q Consensus 533 Ia~G~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~-~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG~Vy~WG~n~~GQ 611 (1092)
|+||..|+++|.+|++||+||+|.+||||.++... ..|+.|.. +.+..|++|++|++|++++-.||+||++|.=..||
T Consensus 772 VSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~-~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQ 850 (3738)
T KOG1428|consen 772 VSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVIL-PSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQ 850 (3738)
T ss_pred EeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEc-CCCCceEEEecCCCceEEEecCCcEEEeccccCcc
Confidence 99999999999999999999999999999998764 47888874 66778999999999999999999999999999999
Q ss_pred CCCCCCCC---cccCceeeecc---CCceeeEEecCCccee
Q 001361 612 LGHGDTDD---RNFPSLVEALK---DKQVKSIVCGTSFTAA 646 (1092)
Q Consensus 612 LG~G~~~~---~~~P~~V~~l~---~~~V~~IacG~~~T~a 646 (1092)
||..--+. ...|.+|..+. +.....|-+-++.|++
T Consensus 851 L~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss~i 891 (3738)
T KOG1428|consen 851 LARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSSII 891 (3738)
T ss_pred ccCccccccccccCCCcCCCCCccccccceeeccCCCccee
Confidence 99653222 23577776542 3345566665555543
No 9
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.81 E-value=5.1e-20 Score=178.73 Aligned_cols=104 Identities=27% Similarity=0.523 Sum_probs=95.2
Q ss_pred HHHHHhcCCeEEEEecCCCceeEeEEEeCCCCeEEEecCC--ccceEEccceeecccCCCChhhhcCCCC----CCCCCe
Q 001361 18 AITALKKGAHLLKYGRRGKPKFCPFRLANDESILIWISGK--EEKHLKLSHVSRIIPGQRTPIFQRYPRP----EKEYQS 91 (1092)
Q Consensus 18 ~l~~L~~Gt~l~K~~~~~kp~~r~f~L~~d~~~l~W~~~k--~~~~i~l~~I~eVr~G~~t~~f~~~~~~----~~~~~~ 91 (1092)
++.+|++|+.|+|+.++++++.|+|+|+++...|.|.+.+ ..+.|+|++|+|||.|+.++.|++.... ..+++|
T Consensus 2 v~~~L~~G~~~~K~~~~~~~~~~~f~ld~~~~~l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~ 81 (115)
T cd01248 2 VPEALQRGSVFIKWDDTSRERRRLFRLDEKGFFLYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERC 81 (115)
T ss_pred chHHHhCCCEEEEEcCCCceeeEEEEEcCCCcEEEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccE
Confidence 5689999999999988889999999999999999999865 5778999999999999999999997553 588999
Q ss_pred EEEEEcC----ceeEEEeCCHHHHHHHHHHHHHH
Q 001361 92 FSLIYND----RSLDLICKDKDEAEVWFTGLKAL 121 (1092)
Q Consensus 92 FSiiy~~----rsLDLia~~~~e~~~Wv~gL~~L 121 (1092)
|||||+. ++|||||+|+++|+.|++||++|
T Consensus 82 fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~L 115 (115)
T cd01248 82 FTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRKL 115 (115)
T ss_pred EEEEECCCCCeeEEEEEECCHHHHHHHHHHHhhC
Confidence 9999976 69999999999999999999986
No 10
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.80 E-value=9.9e-19 Score=209.10 Aligned_cols=250 Identities=26% Similarity=0.434 Sum_probs=174.6
Q ss_pred CCCEEEEEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCC
Q 001361 304 VLDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGG 383 (1092)
Q Consensus 304 ~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~ 383 (1092)
..+|+.|.+...-.-++.++|++|..|...-. ....-..+..|++.-|.+++.|..|+++|+.+|+||+||-
T Consensus 568 ~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~Gl 639 (3738)
T KOG1428|consen 568 RRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGL 639 (3738)
T ss_pred cceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhccccceeehhhccccceeEEEeCCeEEEEec
Confidence 34677664444334578899999999953310 1123345677888999999999999999999999999999
Q ss_pred ccCCCCccCCCCCcceecceeecC-------C------CCCCcEEEEEeCCCeE---EEE---EcCCcEEEeecCCCccc
Q 001361 384 SNCNFGLLGHGNEMSLWLPKKLNG-------P------LEGIHVSSVSCGPWHT---AVV---TSAGQLFTFGDGTFGVL 444 (1092)
Q Consensus 384 n~~~~GqLG~g~~~~~~~P~~v~~-------~------l~~~~I~~IscG~~Ht---~aL---t~dG~Vy~wG~N~~GQL 444 (1092)
| +.+|+|.-.........+..+ | +.+..-+-..||.-.. ++. --.|.+..+|.+..+.+
T Consensus 640 N--N~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~ 717 (3738)
T KOG1428|consen 640 N--NMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCL 717 (3738)
T ss_pred C--CcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccce
Confidence 9 999999754322111111110 0 1111222223332211 111 11356666666655443
Q ss_pred CCC------C---------------------Ccccccceeee---cCCCCeEEEEecCCceEEEEEEeeecCCCCccCCC
Q 001361 445 GHG------D---------------------RISVSTPREVD---SLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSS 494 (1092)
Q Consensus 445 G~g------~---------------------~~~~~~P~~V~---~l~~~~I~~VacG~~ht~aLte~~~~~s~~~~~~~ 494 (1092)
-.| + ......|..|. .....++.+|+||.+|+++|. .+
T Consensus 718 ~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~------------sd 785 (3738)
T KOG1428|consen 718 RCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLA------------SD 785 (3738)
T ss_pred eccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEe------------cC
Confidence 211 0 01122344443 233568999999999999997 59
Q ss_pred CeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCcEEEEEecCCcEEEEeCCCCCCCCCCCCCC----ccc
Q 001361 495 GKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANG----KLP 570 (1092)
Q Consensus 495 G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~----~~P 570 (1092)
++||++|.|.+||||+|+...+..|++|..+.+..|++|++|.+||+++..||.||+||.-..|||+.+..+. ..|
T Consensus 786 ~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~P 865 (3738)
T KOG1428|consen 786 RRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIP 865 (3738)
T ss_pred CcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999886543 256
Q ss_pred eeecc
Q 001361 571 TRVEG 575 (1092)
Q Consensus 571 ~~v~~ 575 (1092)
.++.+
T Consensus 866 e~v~~ 870 (3738)
T KOG1428|consen 866 EKVSG 870 (3738)
T ss_pred CcCCC
Confidence 66654
No 11
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=99.70 E-value=9.7e-17 Score=157.37 Aligned_cols=106 Identities=30% Similarity=0.521 Sum_probs=92.4
Q ss_pred HHHHHHHHhcCCeEEEEecCC------CceeEeEEEeCCCCeEEEecCC---------ccceEEccceeecccCCCChhh
Q 001361 15 IELAITALKKGAHLLKYGRRG------KPKFCPFRLANDESILIWISGK---------EEKHLKLSHVSRIIPGQRTPIF 79 (1092)
Q Consensus 15 i~~~l~~L~~Gt~l~K~~~~~------kp~~r~f~L~~d~~~l~W~~~k---------~~~~i~l~~I~eVr~G~~t~~f 79 (1092)
|.+||..|+.|++|.||.|++ +||.|+|+|++++..|.|.+.+ +.+.|.|.+|.+|..|..++.|
T Consensus 2 v~~ai~~~~~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~ 81 (123)
T PF12814_consen 2 VIQAITQLMIGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPG 81 (123)
T ss_pred HHHHHHHhhcccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCcc
Confidence 678999999999999999998 9999999999999999999843 2356999999999999999988
Q ss_pred hcCCCCCCCCCeEEEEEcCceeEEEeCCHHHHHHHHHHHHHHHH
Q 001361 80 QRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFTGLKALIS 123 (1092)
Q Consensus 80 ~~~~~~~~~~~~FSiiy~~rsLDLia~~~~e~~~Wv~gL~~Li~ 123 (1092)
... .....||.|+.++|+|||+|++.+++++|++||++|+.
T Consensus 82 ~~~---~~~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 82 LKK---PDHNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred ccc---cccceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 822 22445666666779999999999999999999999986
No 12
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=99.37 E-value=2.9e-13 Score=102.89 Aligned_cols=37 Identities=70% Similarity=0.914 Sum_probs=31.9
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHhhCCCcccccCCC
Q 001361 905 GEETAKCRAAKDVIKSLTAQLKDMAEMLPVGAVRNSNS 942 (1092)
Q Consensus 905 ~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~~~~~~~~ 942 (1092)
+||++|||||||||||||+|||||+||||++ ..++++
T Consensus 1 ~eEaak~kaaKe~IKsLt~QlK~maekl~~~-~~~~k~ 37 (39)
T PF13713_consen 1 AEEAAKCKAAKEVIKSLTAQLKDMAEKLPGA-YRNCKP 37 (39)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHhCchh-hhccCC
Confidence 5899999999999999999999999999865 334443
No 13
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.28 E-value=3.7e-13 Score=160.39 Aligned_cols=137 Identities=28% Similarity=0.496 Sum_probs=118.4
Q ss_pred hHHHHHHHHhcCCeEEEEecCCCceeEeEEEeCCCCeEEEecCC---ccceEEccceeecccCCCChhhhcCCCCCCCCC
Q 001361 14 DIELAITALKKGAHLLKYGRRGKPKFCPFRLANDESILIWISGK---EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQ 90 (1092)
Q Consensus 14 ~i~~~l~~L~~Gt~l~K~~~~~kp~~r~f~L~~d~~~l~W~~~k---~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~ 90 (1092)
..+++|.+|++|+.|.|++.+++.+.|+|.|+.|...++|.+.. .+..+.|++|.+||.|++|..+++..+...+++
T Consensus 9 ~~~~~~~~~~~gs~~~k~r~~~~~~~r~~~l~~d~~~~r~~~~~~~~~~~~~~i~~i~~vr~g~~t~~lr~~~~~~~~~~ 88 (746)
T KOG0169|consen 9 NDDECILSMQKGSDLRKVRSNSRKFNRLFKLDNDGSTVRWSRTNRDPNKAKVSISEIEEVRSGKQTENLRSLARDLPEDR 88 (746)
T ss_pred ccHHHHHHHHhcchhhhhcccchhHHhhhhhhhccceEEeccccCCchhcccchhhhHHHhccccchhhHHHHHhcCcce
Confidence 34678999999999999999999999999999998888888632 344499999999999999999999888999999
Q ss_pred eEEEEEcC--ceeEEEeCCHHHHHHHHHHHHHHHHccccccCcccCCCcccccccCCCcccccCCCCCCCCCCCCCCCCC
Q 001361 91 SFSLIYND--RSLDLICKDKDEAEVWFTGLKALISRSHYRKGRAESRSDEVSSVATSPRAHTQRSSPLSSPFGSGGSSQK 168 (1092)
Q Consensus 91 ~FSiiy~~--rsLDLia~~~~e~~~Wv~gL~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (1092)
||||+|++ ++|||+|.++++++.||.||++|+....+.+.+ ..+..|+.+.|+.+|....
T Consensus 89 ~fsi~~~~~~e~ldl~a~s~~~a~~wV~gl~~l~s~~~~~~~~------------------~~~~~wi~~~~~~ad~~~~ 150 (746)
T KOG0169|consen 89 CFSIIFKDRYESLDLIANSKEDANIWVSGLRKLISRSKSMRQR------------------SRREHWIHSIFQEADKNKN 150 (746)
T ss_pred eEEEEeccccccccccCCCHHHHHHHhhhHHHHHhccchhhhc------------------chHHHHHHHHHHHHccccc
Confidence 99999987 899999999999999999999999887633221 3456788888888887554
No 14
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.18 E-value=5.4e-12 Score=111.16 Aligned_cols=67 Identities=39% Similarity=0.883 Sum_probs=47.7
Q ss_pred ccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhh
Q 001361 651 KWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLT 717 (1092)
Q Consensus 651 kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~ 717 (1092)
.|+++.+...|..|...|+++++||||+.||.+||..|+......+.......+++|||+.||..|+
T Consensus 2 ~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 2 HWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp -SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 5999999999999999999999999999999999999999998877333334688999999999875
No 15
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.1e-10 Score=138.35 Aligned_cols=70 Identities=37% Similarity=0.894 Sum_probs=62.0
Q ss_pred eeeccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhhcccCC
Q 001361 648 CLHKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKATET 722 (1092)
Q Consensus 648 ~~~kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~~~~~~ 722 (1092)
+.-.|+.+ ..|..|+..|+++.|+|||++||.+||..|+++...++.++. .+++|||+.||+.+.+...+
T Consensus 158 ~~pdW~D~---~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi--~~~VRVCd~C~E~l~~~s~~ 227 (634)
T KOG1818|consen 158 TAPDWIDS---EECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGI--EKPVRVCDSCYELLTRASVG 227 (634)
T ss_pred CCcccccc---cccceeeeeeeeccccccccccchhhccCccccccCcccccc--cccceehhhhHHHhhhcccc
Confidence 34467654 569999999999999999999999999999999999999997 68999999999999877665
No 16
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.08 E-value=8.4e-11 Score=96.99 Aligned_cols=50 Identities=32% Similarity=0.700 Sum_probs=47.9
Q ss_pred CCeEEEEeCCCCCCCC-CCCCCCcccCceeeeccCCceeeEEecCCcceee
Q 001361 598 RTEVYTWGKGANGRLG-HGDTDDRNFPSLVEALKDKQVKSIVCGTSFTAAI 647 (1092)
Q Consensus 598 dG~Vy~WG~n~~GQLG-~G~~~~~~~P~~V~~l~~~~V~~IacG~~~T~al 647 (1092)
||+||+||.|.+|||| .++......|++|+.+.+.+|++|+||..||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8889999999999999999999999999999987
No 17
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.7e-12 Score=155.39 Aligned_cols=188 Identities=30% Similarity=0.501 Sum_probs=150.7
Q ss_pred ceEEecccCCCCEEEEEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEe
Q 001361 295 VPKAVESAVVLDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTL 374 (1092)
Q Consensus 295 ~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~ 374 (1092)
.|..+..+...+|.+++||.+|+++++..|++|+||.|.+||+|++....-..|.+++.+.+.+..+|++|..|++++..
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~ 83 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS 83 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh
Confidence 34445555566899999999999999999999999999999999996554445999999999999999999999998873
Q ss_pred CCcEEEeCCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCccccc
Q 001361 375 SGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVST 454 (1092)
Q Consensus 375 dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~ 454 (1092)
|+++++.+|.++++|....||+|++-......
T Consensus 84 ------------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~ 115 (850)
T KOG0941|consen 84 ------------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVL 115 (850)
T ss_pred ------------------------------------------------chhhcchhccccccCCcccccccccccccccc
Confidence 99999999999999999999999987778888
Q ss_pred ceeeecCCCCeEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEeccc------CCC
Q 001361 455 PREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAAL------VEP 528 (1092)
Q Consensus 455 P~~V~~l~~~~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l------~~~ 528 (1092)
|..+..+-+..+..|+||.+|+.++.. .-|++|..|.+..| +.....+..-..+ ...
T Consensus 116 ~~~v~e~i~~~~t~ia~~~~ht~a~v~-----------~l~qsf~~~~~~sG------k~~i~s~s~~~~l~~~d~~~~~ 178 (850)
T KOG0941|consen 116 PLLVLELIGSRVTRIACVRGHTLAIVP-----------RLGQSFSFGKGASG------KGVIVSLSGEDLLRDHDSEKDH 178 (850)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHHhhhh-----------hhcceeecccCCCC------CceeeccchhhhcccccHHHHH
Confidence 888888888899999999999999985 67999999988877 1111111110001 112
Q ss_pred CeEEEEeeCcEEEEEecCC
Q 001361 529 NFCQVSCGHSLTVALTTTG 547 (1092)
Q Consensus 529 ~I~~Ia~G~~htlaLt~dG 547 (1092)
.+..+..|.+.++.|...+
T Consensus 179 ~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 179 RCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred HHHHHhcCCCceEEEEeec
Confidence 2445778888888776554
No 18
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.97 E-value=9.6e-11 Score=138.03 Aligned_cols=118 Identities=25% Similarity=0.508 Sum_probs=108.7
Q ss_pred CCCChhhHHHHHHHHhcCCeEEEE-ecCCCceeEeEEEeCCCCeEEEec--CCccceEEccceeecccCCCChhhhcCCC
Q 001361 8 AAPVERDIELAITALKKGAHLLKY-GRRGKPKFCPFRLANDESILIWIS--GKEEKHLKLSHVSRIIPGQRTPIFQRYPR 84 (1092)
Q Consensus 8 ~~~~~~~i~~~l~~L~~Gt~l~K~-~~~~kp~~r~f~L~~d~~~l~W~~--~k~~~~i~l~~I~eVr~G~~t~~f~~~~~ 84 (1092)
.+|++....+.+..|..|+.|.++ +++.+|.+|.|.+-.+++++.|.. .|-++.|+|.+|+|||+|+.+..|+|+.+
T Consensus 7 ~aps~~e~~~t~~sle~gtvmt~~~sk~~~peRr~l~~~~Etrq~~ws~~adk~egai~i~eikeirpgk~skdfdry~~ 86 (1267)
T KOG1264|consen 7 DAPSEYEKSQTKRSLELGTVMTVFSSKKSTPERRTLQVIMETRQVAWSKTADKIEGAIDIREIKEIRPGKNSKDFDRYKR 86 (1267)
T ss_pred CCcchhhHHHHHhhhccceEEEEEecCCCChhhHHHHHHHHHHHHHHHHHHHhhcceeeeeeeeeccCCccchhHHHHHH
Confidence 778999999999999999999988 556789999999999999999986 46789999999999999999999999976
Q ss_pred --CCCCCCeEEEEEcC----ceeEEEeCCHHHHHHHHHHHHHHHHcc
Q 001361 85 --PEKEYQSFSLIYND----RSLDLICKDKDEAEVWFTGLKALISRS 125 (1092)
Q Consensus 85 --~~~~~~~FSiiy~~----rsLDLia~~~~e~~~Wv~gL~~Li~~~ 125 (1092)
..++++||.|.||. ++|.|+|.+.++++.|+.||++|+...
T Consensus 87 ~fr~k~s~cfvil~gt~f~lktls~vatse~e~n~w~~glkw~~~dt 133 (1267)
T KOG1264|consen 87 AFRQKESCCFVILYGTQFVLKTLSLVATSEEEANNWLSGLKWLHQDT 133 (1267)
T ss_pred HhccccceeEEEeeCcEEEeeeeehhhhhhHHHHHHhhcchhhhhhh
Confidence 67889999999998 999999999999999999999998764
No 20
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=98.93 E-value=1.1e-09 Score=90.31 Aligned_cols=50 Identities=40% Similarity=0.737 Sum_probs=47.6
Q ss_pred CCeEEEEeCCCCCccC-CCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEE
Q 001361 323 QGEVFSWGEELGGRLG-HGVDSDVSHPKLIDALKNINVELVACGEHHTCAV 372 (1092)
Q Consensus 323 dG~Vy~wG~N~~GqLG-~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aL 372 (1092)
||+||+||.|.+|||| .+.......|++|+.+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 7999999999999999 8888889999999999999999999999999997
No 21
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=98.87 E-value=4e-10 Score=124.41 Aligned_cols=68 Identities=34% Similarity=0.841 Sum_probs=61.1
Q ss_pred eeeccccccccccCCCCCc-CCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhhc
Q 001361 648 CLHKWVSGVDQSMCSGCRI-PFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTK 718 (1092)
Q Consensus 648 ~~~kwvs~~d~s~C~~C~~-~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~~ 718 (1092)
....|++|.+...|+.|.. .|++..|||||++||.+||..|+.+..+++.+. .++.|||+.||..|.+
T Consensus 158 ~~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~---~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 158 SAAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLS---TKPIRVCDICFEELEK 226 (288)
T ss_pred cCCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccC---CCCceecHHHHHHHhc
Confidence 4568999999999999998 999999999999999999999999985555444 6899999999999986
No 22
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=98.83 E-value=9.3e-10 Score=123.60 Aligned_cols=72 Identities=32% Similarity=0.789 Sum_probs=64.1
Q ss_pred cceeeeeeccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCc-----cchhhh
Q 001361 643 FTAAICLHKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCD-----NCFGKL 716 (1092)
Q Consensus 643 ~T~al~~~kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~-----~C~~~l 716 (1092)
.++.|....|+++.+...|+.|..||++.+|||||++||.+||..||...++.|..+. .|..|||+ .||..-
T Consensus 886 tsatlsppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~gl--~ka~rvcrpqsnldc~~rq 962 (990)
T KOG1819|consen 886 TSATLSPPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHGL--DKAPRVCRPQSNLDCLTRQ 962 (990)
T ss_pred cccccCCcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCccccc--ccCceecCCcccccceeec
Confidence 4455666789999999999999999999999999999999999999999999998887 58899999 787653
No 23
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=98.81 E-value=2e-09 Score=126.29 Aligned_cols=70 Identities=21% Similarity=0.572 Sum_probs=53.0
Q ss_pred eeecccccccc-ccCCCCCcCCccc-----ccccccccccceEEeccCCCccccccc-----C-CCCCCCeeeCccchhh
Q 001361 648 CLHKWVSGVDQ-SMCSGCRIPFNFK-----RKRHNCYNCGLVYCHTCSSKKSVKASM-----A-PNPNKPYRVCDNCFGK 715 (1092)
Q Consensus 648 ~~~kwvs~~d~-s~C~~C~~~F~~~-----~krhhC~~CG~v~C~~Css~~~~~~~~-----~-~~~~k~~RVC~~C~~~ 715 (1092)
-...|++|.+. ..|+.|+..|.+. .|+||||.||.+||..||+++..++.. + +....++|||+.||.+
T Consensus 449 hAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq 528 (1374)
T PTZ00303 449 HNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKE 528 (1374)
T ss_pred cCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHH
Confidence 44589998875 6799999999754 589999999999999999988643211 1 1112356899999966
Q ss_pred hh
Q 001361 716 LT 717 (1092)
Q Consensus 716 l~ 717 (1092)
+.
T Consensus 529 ~E 530 (1374)
T PTZ00303 529 YE 530 (1374)
T ss_pred HH
Confidence 54
No 24
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.4e-10 Score=137.26 Aligned_cols=180 Identities=24% Similarity=0.417 Sum_probs=140.2
Q ss_pred CCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCCeEEEEecCCceEEEEEEeeecCCCCc
Q 001361 411 GIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSS 490 (1092)
Q Consensus 411 ~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLte~~~~~s~~~ 490 (1092)
-.+|.+++||.+|+++++..|++|.||.|.+||+|++....-..|..++.+.|.....|++|..|++++.- ....
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~-----~~~~ 87 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS-----HTVL 87 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh-----chhh
Confidence 34799999999999999999999999999999999995444445999999999999999999999999862 2344
Q ss_pred cCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCcEEEEEe-cCCcEEEEeCCCCC--CCCCCCCCC
Q 001361 491 NCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALT-TTGHVYTMGSPVYG--QLGDPKANG 567 (1092)
Q Consensus 491 ~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLt-~dG~Vy~wG~N~~G--QLG~~~~~~ 567 (1092)
.+..|.+|++|....||+||.-......|..+..+....+.+|+||..|+++.- .-|++|.+|.+..| ++-....
T Consensus 88 lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~s~s~-- 165 (850)
T KOG0941|consen 88 LTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIVSLSG-- 165 (850)
T ss_pred cchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceeeccch--
Confidence 567999999999999999998778888898888888899999999999998764 56999999988776 1110000
Q ss_pred ccceeec--cccCCCCEEEEEEcCCEEEEEEcCC
Q 001361 568 KLPTRVE--GKLTKNFVEEIACGDYHVAVLTSRT 599 (1092)
Q Consensus 568 ~~P~~v~--~~l~~~~I~~Ia~G~~HslaLT~dG 599 (1092)
+.... +.-....+..+..|.+.+..|...+
T Consensus 166 --~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 166 --EDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred --hhhcccccHHHHHHHHHHhcCCCceEEEEeec
Confidence 00000 0001122556788888888776554
No 25
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.71 E-value=2.2e-08 Score=73.34 Aligned_cols=30 Identities=53% Similarity=1.020 Sum_probs=26.1
Q ss_pred EEEEEEcCCEEEEEEcCCeEEEEeCCCCCC
Q 001361 582 VEEIACGDYHVAVLTSRTEVYTWGKGANGR 611 (1092)
Q Consensus 582 I~~Ia~G~~HslaLT~dG~Vy~WG~n~~GQ 611 (1092)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 26
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.66 E-value=2.9e-08 Score=72.62 Aligned_cols=30 Identities=37% Similarity=0.926 Sum_probs=26.1
Q ss_pred EEEEEeCCCeEEEEEcCCcEEEeecCCCcc
Q 001361 414 VSSVSCGPWHTAVVTSAGQLFTFGDGTFGV 443 (1092)
Q Consensus 414 I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQ 443 (1092)
|++|+||.+|+++|+++|+||+||+|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 27
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=98.55 E-value=3.1e-08 Score=83.79 Aligned_cols=55 Identities=47% Similarity=1.100 Sum_probs=48.4
Q ss_pred cccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchh
Q 001361 658 QSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFG 714 (1092)
Q Consensus 658 ~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~ 714 (1092)
...|+.|...|++..++|||+.||.+||.+|+......+... ..+|+|||+.||.
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~--~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMG--GGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCccc--CCCccEeChHHhC
Confidence 457999999999999999999999999999999998776532 3589999999985
No 28
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=98.38 E-value=4.5e-08 Score=112.84 Aligned_cols=107 Identities=24% Similarity=0.443 Sum_probs=89.7
Q ss_pred HHHHHHhcCCeEEEE-ecCCCceeEeEEEeCCCCeEEEecCC------------ccceEEccceeecccCCCChhhhcCC
Q 001361 17 LAITALKKGAHLLKY-GRRGKPKFCPFRLANDESILIWISGK------------EEKHLKLSHVSRIIPGQRTPIFQRYP 83 (1092)
Q Consensus 17 ~~l~~L~~Gt~l~K~-~~~~kp~~r~f~L~~d~~~l~W~~~k------------~~~~i~l~~I~eVr~G~~t~~f~~~~ 83 (1092)
|-|.+|.+||.|.|. +|+.+-++++.+|+++ ++++.|.+- -.+.|+++||+.|..|+.++..+...
T Consensus 535 qrLnrL~eGt~FRKl~~rrrqdkFWycrLspn-hKvLhygd~de~p~~e~~~esl~~klpvaDIkav~tgkdcphmkek~ 613 (713)
T KOG2999|consen 535 QRLNRLVEGTVFRKLSKRRRQDKFWYCRLSPN-HKVLHYGDCDEEPQGEVTQESLQEKLPVADIKAVVTGKDCPHMKEKS 613 (713)
T ss_pred HHHHHHHhhhHHHHhhhhhhhhhheeeeecCC-cceeeecCccCCCCCCCchhhhhhhcCHHHHHHHhcCCCCcchhhcc
Confidence 459999999999998 5667889999999999 555555421 23469999999999999999888762
Q ss_pred ----CCCCCCCeEEEEEc--C-ceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 84 ----RPEKEYQSFSLIYN--D-RSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 84 ----~~~~~~~~FSiiy~--~-rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
+....++.|||.|. . .+|++||+|+.|+.+|+.||.+|+..
T Consensus 614 a~kQnk~~lelafsityD~~e~~~Lnfiapdk~e~~iWtdGL~aLLG~ 661 (713)
T KOG2999|consen 614 ALKQNKEVLELAFSITYDMKEGETLNFIAPDKTEYCIWTDGLNALLGS 661 (713)
T ss_pred hhhhhHHHHhhhhhhhccCCCCceEeeecCCcceEEeehhhHHHHhCC
Confidence 24556789999996 3 89999999999999999999999965
No 29
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=98.19 E-value=1.2e-07 Score=107.03 Aligned_cols=68 Identities=29% Similarity=0.766 Sum_probs=53.7
Q ss_pred ccccccccccCCCCCcCCcccccccccccccceEEeccCCCccccc------------cc--------CCCCCCCeeeCc
Q 001361 651 KWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKA------------SM--------APNPNKPYRVCD 710 (1092)
Q Consensus 651 kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~------------~~--------~~~~~k~~RVC~ 710 (1092)
.|++|.++..|..|...|++++||||||.||.|+|.+|+..-.+.- .. -.....++|+|.
T Consensus 173 pW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRlC~ 252 (505)
T KOG1842|consen 173 PWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRLCM 252 (505)
T ss_pred cccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHHHH
Confidence 7999999999999999999999999999999999999965543110 00 012345699999
Q ss_pred cchhhhhc
Q 001361 711 NCFGKLTK 718 (1092)
Q Consensus 711 ~C~~~l~~ 718 (1092)
.|-..|-.
T Consensus 253 hCl~~L~~ 260 (505)
T KOG1842|consen 253 HCLDNLFR 260 (505)
T ss_pred HHHHHHHH
Confidence 99777654
No 30
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=98.03 E-value=1.2e-06 Score=108.10 Aligned_cols=62 Identities=27% Similarity=0.573 Sum_probs=52.3
Q ss_pred eeeccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccc
Q 001361 648 CLHKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNC 712 (1092)
Q Consensus 648 ~~~kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C 712 (1092)
....|+++.....|+.|.+.|.+++||||||+||.|+|..||+.+..+-.+.+ +--|||..|
T Consensus 547 kqP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl~e---~~~rv~nV~ 608 (1287)
T KOG1841|consen 547 KQPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYLSE---SEGRVSNVD 608 (1287)
T ss_pred CCCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhcCc---ccccccccc
Confidence 45689999999999999999999999999999999999999999976655543 345666655
No 31
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.87 E-value=0.00011 Score=69.27 Aligned_cols=86 Identities=20% Similarity=0.303 Sum_probs=62.8
Q ss_pred CCeEEEEecCCC-----ceeEeEEEeCCCCeEEEecC---CccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEE
Q 001361 25 GAHLLKYGRRGK-----PKFCPFRLANDESILIWISG---KEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIY 96 (1092)
Q Consensus 25 Gt~l~K~~~~~k-----p~~r~f~L~~d~~~l~W~~~---k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy 96 (1092)
|..|+|-.+.|+ -|.|+|.|+. ..|.|+.+ ++...|+|++|+.|..-... .| ....+|.|++
T Consensus 4 ~~~~~kr~~~~~~~~~n~KkRwF~Lt~--~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~-~~-------~~~~~fqivt 73 (98)
T cd01244 4 NLQQVDRSRLAWKKVLHFKKRYFQLTT--THLSWAKDVQCKKSALIKLAAIKGTEPLSDK-SF-------VNVDIITIVC 73 (98)
T ss_pred ccEEEEcccCCCccCcCCceeEEEECC--CEEEEECCCCCceeeeEEccceEEEEEcCCc-cc-------CCCceEEEEe
Confidence 444555543333 2889999994 46777653 35678999999887643332 11 2236999999
Q ss_pred cCceeEEEeCCHHHHHHHHHHHHH
Q 001361 97 NDRSLDLICKDKDEAEVWFTGLKA 120 (1092)
Q Consensus 97 ~~rsLDLia~~~~e~~~Wv~gL~~ 120 (1092)
.+++|-|.|++++|++.|+..|+.
T Consensus 74 ~~r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 74 EDDTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhc
Confidence 999999999999999999999874
No 32
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=97.69 E-value=0.00034 Score=66.06 Aligned_cols=93 Identities=22% Similarity=0.238 Sum_probs=65.7
Q ss_pred eEEEEecC-CCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCcee
Q 001361 27 HLLKYGRR-GKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDRSL 101 (1092)
Q Consensus 27 ~l~K~~~~-~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~rsL 101 (1092)
.|.|-+.. +.=+.|+|.|..+...|.++.+. ....|+|+++..|....... ..+.......+|.|...+|++
T Consensus 4 ~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~---~~~~~~~~~~~f~i~t~~r~~ 80 (101)
T cd01235 4 YLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGM---GAPKHTSRKGFFDLKTSKRTY 80 (101)
T ss_pred EEEEcCCCCCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCC---CCCCCCCCceEEEEEeCCceE
Confidence 35555433 34488899999887789888732 45679999888777543221 001112234578877788999
Q ss_pred EEEeCCHHHHHHHHHHHHHHH
Q 001361 102 DLICKDKDEAEVWFTGLKALI 122 (1092)
Q Consensus 102 DLia~~~~e~~~Wv~gL~~Li 122 (1092)
.|.|++++|++.|+.+|+.+|
T Consensus 81 ~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 81 NFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEECCCHHHHHHHHHHHHhhC
Confidence 999999999999999998764
No 33
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.57 E-value=1.9e-05 Score=87.24 Aligned_cols=61 Identities=31% Similarity=0.779 Sum_probs=53.1
Q ss_pred ccCCCCCcCCccc-----------ccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhhcccC
Q 001361 659 SMCSGCRIPFNFK-----------RKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKATE 721 (1092)
Q Consensus 659 s~C~~C~~~F~~~-----------~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~~~~~ 721 (1092)
..|..|.++|-|. .|.|||+.||..+|..|+++....|.+++ +-.+|+|+.||..++..++
T Consensus 283 ~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~--e~~vR~~~~c~~~i~~~~~ 354 (404)
T KOG1409|consen 283 DSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGF--EFSVRVCDSCYPTIKDEER 354 (404)
T ss_pred chhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccc--eeEEEEecccchhhhcCCC
Confidence 4688999999643 36799999999999999999999999987 5679999999999987666
No 34
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.48 E-value=0.00066 Score=64.79 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=62.0
Q ss_pred EecCCCceeEeEEEeCCCCeEEEec-----CCccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCceeEEEe
Q 001361 31 YGRRGKPKFCPFRLANDESILIWIS-----GKEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLIC 105 (1092)
Q Consensus 31 ~~~~~kp~~r~f~L~~d~~~l~W~~-----~k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~rsLDLia 105 (1092)
.++++| ++|.|.|..+ ..|.|+. .++...|+|.+..+|..|.... ....||.|++.+|+.-|+|
T Consensus 19 ~~~K~W-krRWFvL~~~-~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~~---------~~~~~f~I~tp~R~f~l~A 87 (104)
T cd01236 19 HRSKRW-QRRWFILYDH-GLLTYALDEMPTTLPQGTIDMNQCTDVVDAEART---------GQKFSICILTPDKEHFIKA 87 (104)
T ss_pred eeeccc-cceEEEEeCC-CEEEEeeCCCCCcccceEEEccceEEEeeccccc---------CCccEEEEECCCceEEEEe
Confidence 445555 6678899865 6677743 2456789999999999887431 1267999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 001361 106 KDKDEAEVWFTGLKA 120 (1092)
Q Consensus 106 ~~~~e~~~Wv~gL~~ 120 (1092)
++++|++.|+..|..
T Consensus 88 ete~E~~~Wi~~l~~ 102 (104)
T cd01236 88 ETKEEISWWLNMLMV 102 (104)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999864
No 35
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=97.47 E-value=0.00064 Score=65.25 Aligned_cols=79 Identities=20% Similarity=0.305 Sum_probs=57.0
Q ss_pred ceeEeEEEeCCCCeEEEecCC------ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCceeEEEeCCHHH
Q 001361 37 PKFCPFRLANDESILIWISGK------EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDE 110 (1092)
Q Consensus 37 p~~r~f~L~~d~~~l~W~~~k------~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~rsLDLia~~~~e 110 (1092)
-+.|+|.|+. ..|.|+.++ ....|+|..+..|..-..... .........||.|+..++++-|.|+|++|
T Consensus 21 wKkRwFvL~~--~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~---~~~~~~~~~~F~i~t~~r~~yl~A~s~~e 95 (106)
T cd01238 21 YKERLFVLTK--SKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKN---PPIPERFKYPFQVVHDEGTLYVFAPTEEL 95 (106)
T ss_pred ceeEEEEEcC--CEEEEECCCcccccCcceeEECCcceEEEEecCCcC---cccccccCccEEEEeCCCeEEEEcCCHHH
Confidence 3678999963 578888643 345799998876654322210 00112235799999999999999999999
Q ss_pred HHHHHHHHHH
Q 001361 111 AEVWFTGLKA 120 (1092)
Q Consensus 111 ~~~Wv~gL~~ 120 (1092)
++.|+.+|+.
T Consensus 96 r~~WI~ai~~ 105 (106)
T cd01238 96 RKRWIKALKQ 105 (106)
T ss_pred HHHHHHHHHh
Confidence 9999999975
No 36
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.36 E-value=0.0017 Score=61.04 Aligned_cols=83 Identities=17% Similarity=0.257 Sum_probs=61.9
Q ss_pred CeEEEEecC----CCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc
Q 001361 26 AHLLKYGRR----GKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN 97 (1092)
Q Consensus 26 t~l~K~~~~----~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~ 97 (1092)
..|.|.+.+ +| +.|.|.|+.+...|.++..+ ....|+|..+..+... .....+|.|+..
T Consensus 3 GyL~K~g~~~~~K~W-kkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~------------~~~~~~F~i~t~ 69 (95)
T cd01265 3 GYLHKIEGKGPLRGR-RSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYDP------------REEKGRFEIHSN 69 (95)
T ss_pred ccEEEecCCCCCcCc-eeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcCC------------CCCCCEEEEEcC
Confidence 357787543 44 78889998876789888743 3467888775443211 112568999999
Q ss_pred CceeEEEeCCHHHHHHHHHHHHHH
Q 001361 98 DRSLDLICKDKDEAEVWFTGLKAL 121 (1092)
Q Consensus 98 ~rsLDLia~~~~e~~~Wv~gL~~L 121 (1092)
+|+..|.|+|++|++.|+.+|+..
T Consensus 70 ~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 70 NEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhh
Confidence 999999999999999999998764
No 37
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=5.5e-05 Score=85.13 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=56.9
Q ss_pred eeccccccccccCCCCCcCCc-ccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhh
Q 001361 649 LHKWVSGVDQSMCSGCRIPFN-FKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKL 716 (1092)
Q Consensus 649 ~~kwvs~~d~s~C~~C~~~F~-~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l 716 (1092)
...|..+.....|++|-..|+ ++.+|||||.|+..||.+|+-...+.+.. +--+.++|||+.|+..|
T Consensus 151 ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p-~a~d~l~RVldS~~~nl 218 (473)
T KOG1843|consen 151 APVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVP-FAADPLQRVLDSCAFNL 218 (473)
T ss_pred CccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCC-cccCCHHHHHhhHhhcc
Confidence 357889999999999999998 88899999999999999998777666543 22357899999999998
No 38
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=97.27 E-value=0.0015 Score=61.92 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=62.8
Q ss_pred HhcCCeEEEEecCCCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc
Q 001361 22 LKKGAHLLKYGRRGKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN 97 (1092)
Q Consensus 22 L~~Gt~l~K~~~~~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~ 97 (1092)
|++|-...|-+..+.=+.|+|.|... .|.++... ....|+|.++.-...-...+. .....||.|+..
T Consensus 3 ~k~G~L~Kkg~~~k~WkkRwfvL~~~--~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~-------~~~~~~F~I~t~ 73 (100)
T cd01233 3 SKKGYLNFPEETNSGWTRRFVVVRRP--YLHIYRSDKDPVERGVINLSTARVEHSEDQAAM-------VKGPNTFAVCTK 73 (100)
T ss_pred ceeEEEEeeCCCCCCcEEEEEEEECC--EEEEEccCCCccEeeEEEecccEEEEccchhhh-------cCCCcEEEEECC
Confidence 45665555544444458899999974 77776542 345677775532211111110 112469999999
Q ss_pred CceeEEEeCCHHHHHHHHHHHHHHHH
Q 001361 98 DRSLDLICKDKDEAEVWFTGLKALIS 123 (1092)
Q Consensus 98 ~rsLDLia~~~~e~~~Wv~gL~~Li~ 123 (1092)
+|++-|.|++++|++.|+..|+.++.
T Consensus 74 ~rt~~~~A~s~~e~~~Wi~ai~~~~~ 99 (100)
T cd01233 74 HRGYLFQALSDKEMIDWLYALNPLYA 99 (100)
T ss_pred CCEEEEEcCCHHHHHHHHHHhhhhhc
Confidence 99999999999999999999998874
No 39
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.27 E-value=0.0016 Score=61.80 Aligned_cols=76 Identities=24% Similarity=0.364 Sum_probs=59.1
Q ss_pred ceeEeEEEeCCCCeEEEecCC----cc-ceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCceeEEEeCCHHHH
Q 001361 37 PKFCPFRLANDESILIWISGK----EE-KHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEA 111 (1092)
Q Consensus 37 p~~r~f~L~~d~~~l~W~~~k----~~-~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~rsLDLia~~~~e~ 111 (1092)
=+.|+|.|.. ..|.|+..+ +. ..|+|.++..|+...+.. + ......||.|++.+||.-|.|+|++|+
T Consensus 19 WkrRwF~L~~--~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~---~---~~~~~~~Fei~tp~rt~~l~A~se~e~ 90 (101)
T cd01264 19 WKTRYFTLSG--AQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKR---R---DRSLPKAFEIFTADKTYILKAKDEKNA 90 (101)
T ss_pred ceeEEEEEeC--CEEEEEeccCccCCCCceEEcccceEEeeccccc---c---ccccCcEEEEEcCCceEEEEeCCHHHH
Confidence 3678999994 568887643 23 689999999998875431 1 112257999999999999999999999
Q ss_pred HHHHHHHHH
Q 001361 112 EVWFTGLKA 120 (1092)
Q Consensus 112 ~~Wv~gL~~ 120 (1092)
+.|+..|+.
T Consensus 91 e~WI~~i~~ 99 (101)
T cd01264 91 EEWLQCLNI 99 (101)
T ss_pred HHHHHHHHh
Confidence 999998864
No 40
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=97.17 E-value=0.0035 Score=58.09 Aligned_cols=90 Identities=21% Similarity=0.331 Sum_probs=68.1
Q ss_pred eEEEEe-cCCCceeEeEEEeCCCCeEEEecCC------ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC-
Q 001361 27 HLLKYG-RRGKPKFCPFRLANDESILIWISGK------EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND- 98 (1092)
Q Consensus 27 ~l~K~~-~~~kp~~r~f~L~~d~~~l~W~~~k------~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~- 98 (1092)
.|.|.+ ..++.+.|+|.|..+ ..+.|.+.. ....|+|.++ .|+.....+.- .......||.|.+.+
T Consensus 6 ~L~~~~~~~~~wk~r~~vL~~~-~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~----~~~~~~~~f~i~~~~~ 79 (104)
T PF00169_consen 6 WLLKKSSSRKKWKKRYFVLRDS-YLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFL----SNKKRKNCFEITTPNG 79 (104)
T ss_dssp EEEEEESSSSSEEEEEEEEETT-EEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTST----STSSSSSEEEEEETTS
T ss_pred EEEEECCCCCCeEEEEEEEECC-EEEEEecCccccceeeeEEEEecCc-eEEEcCccccc----cccCCCcEEEEEeCCC
Confidence 355554 567789999999885 344444432 3456899988 88877766431 345667899999988
Q ss_pred ceeEEEeCCHHHHHHHHHHHHHHH
Q 001361 99 RSLDLICKDKDEAEVWFTGLKALI 122 (1092)
Q Consensus 99 rsLDLia~~~~e~~~Wv~gL~~Li 122 (1092)
+++.|.|+|+++++.|+..|+..+
T Consensus 80 ~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 80 KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 599999999999999999999876
No 41
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=97.16 E-value=0.0027 Score=57.89 Aligned_cols=90 Identities=24% Similarity=0.329 Sum_probs=66.1
Q ss_pred hcCCeEEEEe-cCCCceeEeEEEeCCCCeEEEecCC-------ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEE
Q 001361 23 KKGAHLLKYG-RRGKPKFCPFRLANDESILIWISGK-------EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSL 94 (1092)
Q Consensus 23 ~~Gt~l~K~~-~~~kp~~r~f~L~~d~~~l~W~~~k-------~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSi 94 (1092)
++|..+.+.. ..++.+.|+|.|..+ .|.++..+ ....|+|+++ .|..+..... .....+|.|
T Consensus 3 ~~G~l~~~~~~~~~~~~~~~~~L~~~--~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~-------~~~~~~f~l 72 (102)
T smart00233 3 KEGWLYKKSGGKKKSWKKRYFVLFNS--TLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS-------AKKPHCFEI 72 (102)
T ss_pred eeEEEEEeCCCccCCceEEEEEEECC--EEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc-------CCCceEEEE
Confidence 3455444444 467889999999985 55555422 3456888888 7766655533 344689999
Q ss_pred EEcCc-eeEEEeCCHHHHHHHHHHHHHHH
Q 001361 95 IYNDR-SLDLICKDKDEAEVWFTGLKALI 122 (1092)
Q Consensus 95 iy~~r-sLDLia~~~~e~~~Wv~gL~~Li 122 (1092)
..+++ ++-|.|+++++++.|+..|+.++
T Consensus 73 ~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 73 KTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 99886 99999999999999999998775
No 42
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=96.94 E-value=0.0078 Score=57.90 Aligned_cols=81 Identities=22% Similarity=0.186 Sum_probs=58.4
Q ss_pred CceeEeEEEeCCC-----CeEEEecC----CccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCceeEEEeC
Q 001361 36 KPKFCPFRLANDE-----SILIWISG----KEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICK 106 (1092)
Q Consensus 36 kp~~r~f~L~~d~-----~~l~W~~~----k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~rsLDLia~ 106 (1092)
.=+.|+|.|..+. ..|.++.. +..+.|+|.++..|..+.... .........|.|....|++-|+|+
T Consensus 18 ~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~-----~~~~~~~~~f~i~t~~r~y~l~A~ 92 (108)
T cd01266 18 KWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCT-----AGNCIFGYGFDIETIVRDLYLVAK 92 (108)
T ss_pred CcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEccccccc-----ccCcccceEEEEEeCCccEEEEEC
Confidence 3488899998653 24666653 356789999988876653221 011122356999988899999999
Q ss_pred CHHHHHHHHHHHHHH
Q 001361 107 DKDEAEVWFTGLKAL 121 (1092)
Q Consensus 107 ~~~e~~~Wv~gL~~L 121 (1092)
+++|++.|+..|+-|
T Consensus 93 s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 93 NEEEMTLWVNCICKL 107 (108)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999754
No 43
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.92 E-value=0.0063 Score=57.68 Aligned_cols=89 Identities=21% Similarity=0.346 Sum_probs=62.4
Q ss_pred HHhcCCeEEEEecCCCceeEeEEEeCCCCeEEEecCC--------ccceEEccceeecccCCCChhhhcCCCCCCCCCeE
Q 001361 21 ALKKGAHLLKYGRRGKPKFCPFRLANDESILIWISGK--------EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSF 92 (1092)
Q Consensus 21 ~L~~Gt~l~K~~~~~kp~~r~f~L~~d~~~l~W~~~k--------~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~F 92 (1092)
++++|. |+|+++++ ++.|+|+|=.| .|+++... ....|+|+++. |+..... .....||
T Consensus 2 ~ikEG~-L~K~~~k~-~~~R~~FLFnD--~LlY~~~~~~~~~~y~~~~~i~L~~~~-V~~~~~~---------~~~~~~F 67 (99)
T cd01220 2 FIRQGC-LLKLSKKG-LQQRMFFLFSD--LLLYTSKSPTDQNSFRILGHLPLRGML-TEESEHE---------WGVPHCF 67 (99)
T ss_pred eeeEEE-EEEEeCCC-CceEEEEEccc--eEEEEEeecCCCceEEEEEEEEcCceE-EeeccCC---------cCCceeE
Confidence 345665 46777764 78899999888 45555421 23457777664 4433221 1224699
Q ss_pred EEEEcCceeEEEeCCHHHHHHHHHHHHHHHH
Q 001361 93 SLIYNDRSLDLICKDKDEAEVWFTGLKALIS 123 (1092)
Q Consensus 93 Siiy~~rsLDLia~~~~e~~~Wv~gL~~Li~ 123 (1092)
.|.-..+++-|.|.|++|.+.|+..|+.-|.
T Consensus 68 ~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 68 TIFGGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 9998889999999999999999999987763
No 44
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=96.86 E-value=0.0092 Score=56.97 Aligned_cols=90 Identities=16% Similarity=0.314 Sum_probs=61.3
Q ss_pred eEEEEecC--CCceeEeEEEeCCCCeEEEecCC----ccceEEcccee---ecccCCCChhhhcCCCCCCCCCeEEEEEc
Q 001361 27 HLLKYGRR--GKPKFCPFRLANDESILIWISGK----EEKHLKLSHVS---RIIPGQRTPIFQRYPRPEKEYQSFSLIYN 97 (1092)
Q Consensus 27 ~l~K~~~~--~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~---eVr~G~~t~~f~~~~~~~~~~~~FSiiy~ 97 (1092)
.|.|-+.+ ..-+.|+|.|.. ..|.|+.++ ....|+|.++. +|..+..... ......||.|+..
T Consensus 4 ~L~K~g~~~~k~wkkRwFvL~~--~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~------~~~~~~~F~i~t~ 75 (103)
T cd01251 4 FMEKTGPKHTEGFKKRWFTLDD--RRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGT------QGNHWYGVTLVTP 75 (103)
T ss_pred eEEecCCCCCCCceeEEEEEeC--CEEEEECCCCCcCcCcEEEeeccccceeEeccCCccc------cccccceEEEEeC
Confidence 45665532 223889999984 578888643 34568887653 3443321110 0111239999999
Q ss_pred CceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 98 DRSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 98 ~rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
+|+.-|.|++++|++.|+.+|+..|..
T Consensus 76 ~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 76 ERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998853
No 45
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.75 E-value=0.01 Score=56.47 Aligned_cols=90 Identities=23% Similarity=0.341 Sum_probs=61.1
Q ss_pred HHhcCCeEEEEecC-CCceeEeEEEeCCCCeEEEecCC---c-----cceEEccceeecccCCCChhhhcCCCCCCCCCe
Q 001361 21 ALKKGAHLLKYGRR-GKPKFCPFRLANDESILIWISGK---E-----EKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQS 91 (1092)
Q Consensus 21 ~L~~Gt~l~K~~~~-~kp~~r~f~L~~d~~~l~W~~~k---~-----~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~ 91 (1092)
++++|.. +|.+++ .+++.|+|+|=.| ..|.+.+.. . ...|+|+++. |.... ......+
T Consensus 2 ~ikeG~L-~K~~~~~~~~k~RyffLFnd-~Ll~~~~~~~~~~~~y~~~~~i~l~~~~-v~~~~----------~~~~~~~ 68 (101)
T cd01219 2 LLKEGSV-LKISSTTEKTEERYLFLFND-LLLYCVPRKMIGGSKFKVRARIDVSGMQ-VCEGD----------NLERPHS 68 (101)
T ss_pred cccceEE-EEEecCCCCceeEEEEEeCC-EEEEEEcccccCCCcEEEEEEEecccEE-EEeCC----------CCCcCce
Confidence 3456654 577654 6789999999888 444444311 1 1235555432 22110 1223578
Q ss_pred EEEEEcCceeEEEeCCHHHHHHHHHHHHHHHH
Q 001361 92 FSLIYNDRSLDLICKDKDEAEVWFTGLKALIS 123 (1092)
Q Consensus 92 FSiiy~~rsLDLia~~~~e~~~Wv~gL~~Li~ 123 (1092)
|.|....|++.|.|+|++|.+.|+..|+..|.
T Consensus 69 F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 69 FLVSGKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 99988889999999999999999999998875
No 46
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=96.60 E-value=0.017 Score=53.89 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=54.5
Q ss_pred eEEEEecCC-CceeEeEEEeCCCCeEEEecCCc------cceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC-
Q 001361 27 HLLKYGRRG-KPKFCPFRLANDESILIWISGKE------EKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND- 98 (1092)
Q Consensus 27 ~l~K~~~~~-kp~~r~f~L~~d~~~l~W~~~k~------~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~- 98 (1092)
.|.|.+..- .=+.|+|.|. + ..|.++.++. ...|+|+...-+. ...+..+|.|+..+
T Consensus 4 ~L~K~~~~~k~Wk~RwFvL~-~-g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~-------------~~~~~~~F~i~~~~~ 68 (91)
T cd01247 4 VLSKWTNYINGWQDRYFVLK-E-GNLSYYKSEAEKSHGCRGSIFLKKAIIAA-------------HEFDENRFDISVNEN 68 (91)
T ss_pred EEEEeccccCCCceEEEEEE-C-CEEEEEecCccCcCCCcEEEECcccEEEc-------------CCCCCCEEEEEeCCC
Confidence 466775432 2377889995 3 6787776432 3567776532111 12235789998877
Q ss_pred ceeEEEeCCHHHHHHHHHHHHH
Q 001361 99 RSLDLICKDKDEAEVWFTGLKA 120 (1092)
Q Consensus 99 rsLDLia~~~~e~~~Wv~gL~~ 120 (1092)
+++.|.|++++|++.|+.+|+.
T Consensus 69 r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 69 VVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred eEEEEEeCCHHHHHHHHHHHhh
Confidence 9999999999999999999863
No 47
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.59 E-value=0.01 Score=53.51 Aligned_cols=85 Identities=25% Similarity=0.285 Sum_probs=58.8
Q ss_pred CCeEEEEecC-CCceeEeEEEeCCCCeEEEecCC------ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc
Q 001361 25 GAHLLKYGRR-GKPKFCPFRLANDESILIWISGK------EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN 97 (1092)
Q Consensus 25 Gt~l~K~~~~-~kp~~r~f~L~~d~~~l~W~~~k------~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~ 97 (1092)
|....+.... +..+.|+|.|..+ ..+++.... ....|+|.+ ..|....... ....+|.|++.
T Consensus 3 G~l~~~~~~~~~~w~~~~~~L~~~-~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~---------~~~~~f~i~~~ 71 (96)
T cd00821 3 GYLLKKTGKLRKGWKRRWFVLFND-LLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDS---------GRKNCFEIRTP 71 (96)
T ss_pred chhhhhhChhhCCccEEEEEEECC-EEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcC---------CCCcEEEEecC
Confidence 3333333332 5567888899876 444554432 334577776 5555544442 45789999998
Q ss_pred C-ceeEEEeCCHHHHHHHHHHHHH
Q 001361 98 D-RSLDLICKDKDEAEVWFTGLKA 120 (1092)
Q Consensus 98 ~-rsLDLia~~~~e~~~Wv~gL~~ 120 (1092)
. +.+.|.|++.++++.|+..|+.
T Consensus 72 ~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 72 DGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred CCcEEEEEeCCHHHHHHHHHHHhc
Confidence 8 9999999999999999999875
No 48
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=96.29 E-value=0.0013 Score=77.59 Aligned_cols=66 Identities=24% Similarity=0.483 Sum_probs=54.8
Q ss_pred ccccccCCCCCcCCc-ccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhhcccCCC
Q 001361 655 GVDQSMCSGCRIPFN-FKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKATETS 723 (1092)
Q Consensus 655 ~~d~s~C~~C~~~F~-~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~~~~~~~ 723 (1092)
+.....|..|+.+|+ .+++||||..||.+.|..|+...... ..+.+..-|||..||.....+..+.
T Consensus 412 ~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l---~~~~s~ssrv~~~~~~~~~~a~~s~ 478 (623)
T KOG4424|consen 412 DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKL---SYDNSRSSRVCMDRYLTPSGAPGSP 478 (623)
T ss_pred ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhhhh---cccccchhhhhhhhccCCCCCCCCc
Confidence 677789999999997 99999999999999999999888544 3344678899999998866555543
No 49
>PF15409 PH_8: Pleckstrin homology domain
Probab=96.25 E-value=0.031 Score=51.70 Aligned_cols=79 Identities=16% Similarity=0.263 Sum_probs=55.5
Q ss_pred EEEE-ecCCCc-eeEeEEEeCCCCeEEEecCCcc----ceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCcee
Q 001361 28 LLKY-GRRGKP-KFCPFRLANDESILIWISGKEE----KHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDRSL 101 (1092)
Q Consensus 28 l~K~-~~~~kp-~~r~f~L~~d~~~l~W~~~k~~----~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~rsL 101 (1092)
|+|- +.+.+- +.|+|.|+.+...|.++....+ ..|+|. .. +. ...+..++|.|--|++.-
T Consensus 3 llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~------~a----~i----s~~~~~~~I~idsg~~i~ 68 (89)
T PF15409_consen 3 LLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVS------LA----VI----SANKKSRRIDIDSGDEIW 68 (89)
T ss_pred ceeeccccCCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEcc------ce----EE----EecCCCCEEEEEcCCeEE
Confidence 4444 444443 8899999988899999864332 234332 11 00 012346889999899999
Q ss_pred EEEeCCHHHHHHHHHHHHH
Q 001361 102 DLICKDKDEAEVWFTGLKA 120 (1092)
Q Consensus 102 DLia~~~~e~~~Wv~gL~~ 120 (1092)
+|-|.++++++.|+.+|+.
T Consensus 69 hLKa~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 69 HLKAKSQEDFQRWVSALQK 87 (89)
T ss_pred EEEcCCHHHHHHHHHHHHh
Confidence 9999999999999999985
No 50
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.19 E-value=0.042 Score=50.64 Aligned_cols=74 Identities=15% Similarity=0.248 Sum_probs=49.0
Q ss_pred CCCceeEeEEEeCCCCeEEEecCCc------cceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCceeEEEeCC
Q 001361 34 RGKPKFCPFRLANDESILIWISGKE------EKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKD 107 (1092)
Q Consensus 34 ~~kp~~r~f~L~~d~~~l~W~~~k~------~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~rsLDLia~~ 107 (1092)
.+.-+.|+|.|.. ..|.++.... ...|+|..+. |..-.. ......||.|+..++++-|.|++
T Consensus 13 ~~~W~kr~~~L~~--~~l~~y~~~~~~~~~~~~~i~l~~~~-v~~~~~---------~~~~~~~f~i~~~~~~~~f~a~s 80 (94)
T cd01250 13 NKEWKKRWFVLKN--GQLTYHHRLKDYDNAHVKEIDLRRCT-VRHNGK---------QPDRRFCFEVISPTKTWHFQADS 80 (94)
T ss_pred CCCceEEEEEEeC--CeEEEEcCCcccccccceEEeccceE-EecCcc---------ccCCceEEEEEcCCcEEEEECCC
Confidence 3456888899983 4666664332 2245554321 111110 01235799999999999999999
Q ss_pred HHHHHHHHHHHH
Q 001361 108 KDEAEVWFTGLK 119 (1092)
Q Consensus 108 ~~e~~~Wv~gL~ 119 (1092)
.++++.|+.+|+
T Consensus 81 ~~~~~~Wi~al~ 92 (94)
T cd01250 81 EEERDDWISAIQ 92 (94)
T ss_pred HHHHHHHHHHHh
Confidence 999999999986
No 51
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.16 E-value=0.038 Score=50.61 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=54.1
Q ss_pred EEEEe-cCCCceeEeEEEeCCCCeEEEecCCc------cceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC-c
Q 001361 28 LLKYG-RRGKPKFCPFRLANDESILIWISGKE------EKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND-R 99 (1092)
Q Consensus 28 l~K~~-~~~kp~~r~f~L~~d~~~l~W~~~k~------~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~-r 99 (1092)
|.|.+ ..+.-+.|+|.|.. ..|.++.+.. ...|.|.... |... .....+|.|...+ +
T Consensus 5 L~k~~~~~~~W~~r~~vl~~--~~L~~~~~~~~~~~~~~~~i~l~~~~-~~~~------------~~~~~~F~i~~~~~~ 69 (91)
T cd01246 5 LLKWTNYLKGWQKRWFVLDN--GLLSYYKNKSSMRGKPRGTILLSGAV-ISED------------DSDDKCFTIDTGGDK 69 (91)
T ss_pred EEEecccCCCceeeEEEEEC--CEEEEEecCccCCCCceEEEEeceEE-EEEC------------CCCCcEEEEEcCCCC
Confidence 44443 34556888999983 5777776432 2346666542 2211 1125799999977 9
Q ss_pred eeEEEeCCHHHHHHHHHHHHH
Q 001361 100 SLDLICKDKDEAEVWFTGLKA 120 (1092)
Q Consensus 100 sLDLia~~~~e~~~Wv~gL~~ 120 (1092)
++-|.|++.+|++.|+.+|+.
T Consensus 70 ~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 70 TLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred EEEEECCCHHHHHHHHHHHHh
Confidence 999999999999999999874
No 52
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=95.89 E-value=0.081 Score=50.36 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=57.0
Q ss_pred CceeEeEEEeCCC----CeEEEecCC---------ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCceeE
Q 001361 36 KPKFCPFRLANDE----SILIWISGK---------EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDRSLD 102 (1092)
Q Consensus 36 kp~~r~f~L~~d~----~~l~W~~~k---------~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~rsLD 102 (1092)
.-+.|+|.|..+. ..|.|+.+. +.+.|+|.++..|..-.+ .....+|.|+..+++.-
T Consensus 13 ~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d----------~k~~~~f~i~t~dr~f~ 82 (101)
T cd01257 13 SMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD----------AKHRHLIALYTRDEYFA 82 (101)
T ss_pred CcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc----------cccCeEEEEEeCCceEE
Confidence 3466899998662 378888642 456799999988752111 12247999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHH
Q 001361 103 LICKDKDEAEVWFTGLKAL 121 (1092)
Q Consensus 103 Lia~~~~e~~~Wv~gL~~L 121 (1092)
|+|++++|.+.|+..|.-|
T Consensus 83 l~aese~E~~~Wi~~i~~~ 101 (101)
T cd01257 83 VAAENEAEQDSWYQALLEL 101 (101)
T ss_pred EEeCCHHHHHHHHHHHhhC
Confidence 9999999999999988643
No 53
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=95.72 E-value=0.069 Score=49.96 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=51.4
Q ss_pred CceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC-ceeEEEeCCHHH
Q 001361 36 KPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDE 110 (1092)
Q Consensus 36 kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rsLDLia~~~~e 110 (1092)
.=+.|+|.|.. ..|.++.++ ....|+|.... |..-. ......||.|...+ +++-|.|+|+++
T Consensus 19 ~WkkrwfvL~~--~~L~yyk~~~~~~~~~~I~L~~~~-v~~~~----------~~~k~~~F~I~~~~~~~~~f~a~s~~e 85 (96)
T cd01260 19 KWARRWFVLKG--TTLYWYRSKQDEKAEGLIFLSGFT-IESAK----------EVKKKYAFKVCHPVYKSFYFAAETLDD 85 (96)
T ss_pred CceeEEEEEEC--CEEEEECCCCCCccceEEEccCCE-EEEch----------hcCCceEEEECCCCCcEEEEEeCCHHH
Confidence 45888899985 477777543 34567776542 22111 11235699999877 999999999999
Q ss_pred HHHHHHHHHH
Q 001361 111 AEVWFTGLKA 120 (1092)
Q Consensus 111 ~~~Wv~gL~~ 120 (1092)
++.|+..|+.
T Consensus 86 ~~~Wi~ai~~ 95 (96)
T cd01260 86 LSQWVNHLIT 95 (96)
T ss_pred HHHHHHHHHh
Confidence 9999999863
No 54
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.70 E-value=0.046 Score=50.81 Aligned_cols=72 Identities=28% Similarity=0.513 Sum_probs=51.8
Q ss_pred CCCceeEeEEEeCCCCeEEEecCC---c-cceEEccce--eecccCCCChhhhcCCCCCCCCCeEEEEE-------cC-c
Q 001361 34 RGKPKFCPFRLANDESILIWISGK---E-EKHLKLSHV--SRIIPGQRTPIFQRYPRPEKEYQSFSLIY-------ND-R 99 (1092)
Q Consensus 34 ~~kp~~r~f~L~~d~~~l~W~~~k---~-~~~i~l~~I--~eVr~G~~t~~f~~~~~~~~~~~~FSiiy-------~~-r 99 (1092)
+|--|.|.|.|..+ .|.|+... + +..|+|+.+ ++|-.|--+ ...||.|.+ ++ |
T Consensus 16 ~ggsK~~WFVLt~~--~L~wykd~eeKE~kyilpLdnLk~Rdve~gf~s-----------k~~~FeLfnpd~rnvykd~k 82 (110)
T cd01256 16 KGGSKDYWFVLTSE--SLSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMS-----------RNHKFALFYPDGRNVYKDYK 82 (110)
T ss_pred cCCCcceEEEEecc--eeeeecccccccccceeeccccEEEeecccccC-----------CCcEEEEEcCcccccccchh
Confidence 45678889999886 79999743 2 234788765 455544222 126888875 44 8
Q ss_pred eeEEEeCCHHHHHHHHHHH
Q 001361 100 SLDLICKDKDEAEVWFTGL 118 (1092)
Q Consensus 100 sLDLia~~~~e~~~Wv~gL 118 (1092)
+|+|.|++.++.+.|...+
T Consensus 83 ~lel~~~~~e~vdswkasf 101 (110)
T cd01256 83 QLELGCETLEEVDSWKASF 101 (110)
T ss_pred eeeecCCCHHHHHHHHHHH
Confidence 9999999999999998753
No 55
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.17 E-value=0.16 Score=48.59 Aligned_cols=88 Identities=24% Similarity=0.340 Sum_probs=60.8
Q ss_pred hcCCeEEEEecCCCceeEeEEEeCCCCeEEEecC----C---ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEE
Q 001361 23 KKGAHLLKYGRRGKPKFCPFRLANDESILIWISG----K---EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLI 95 (1092)
Q Consensus 23 ~~Gt~l~K~~~~~kp~~r~f~L~~d~~~l~W~~~----k---~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii 95 (1092)
++|. |+|+.|+ +|+.|+|+|=.| .|++.+. + ....++|.++. |..-.+. ..-..+|.|.
T Consensus 6 ~eG~-L~K~~rk-~~~~R~ffLFnD--~LvY~~~~~~~~~~~~~~~i~L~~~~-v~~~~d~---------~~~~n~f~I~ 71 (104)
T cd01218 6 GEGV-LTKMCRK-KPKQRQFFLFND--ILVYGNIVISKKKYNKQHILPLEGVQ-VESIEDD---------GIERNGWIIK 71 (104)
T ss_pred ecCc-EEEeecC-CCceEEEEEecC--EEEEEEeecCCceeeEeeEEEccceE-EEecCCc---------ccccceEEEe
Confidence 4554 5777766 678889999988 5666431 1 23346776652 1111111 1224789999
Q ss_pred EcCceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 96 YNDRSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 96 y~~rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
...|+.=+.|++++|-..|+..|+.-+..
T Consensus 72 ~~~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 72 TPTKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred cCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999887754
No 56
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=95.09 E-value=0.19 Score=45.44 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=56.0
Q ss_pred CCceeEeEEEeCCCCeEEEecCC---cc--ceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc---CceeEEEeC
Q 001361 35 GKPKFCPFRLANDESILIWISGK---EE--KHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN---DRSLDLICK 106 (1092)
Q Consensus 35 ~kp~~r~f~L~~d~~~l~W~~~k---~~--~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~---~rsLDLia~ 106 (1092)
+..+.|+|.|..+ .|..+..+ .. ..+++..+. |..+.... ....+|.|++. .+.+-|.|+
T Consensus 17 ~~w~~~~~~l~~~--~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~---------~~~~~F~i~~~~~~~~~~~~~~~ 84 (99)
T cd00900 17 KRWKRRWFFLFDD--GLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGS---------DDPNCFAIVTKDRGRRVFVFQAD 84 (99)
T ss_pred cCceeeEEEEECC--EEEEEEcCCCCcCCCCEEEccceE-EEECCCCC---------CCCceEEEECCCCCcEEEEEEcC
Confidence 5678888999864 56666533 22 257888877 76665543 23579999998 689999999
Q ss_pred CHHHHHHHHHHHHH
Q 001361 107 DKDEAEVWFTGLKA 120 (1092)
Q Consensus 107 ~~~e~~~Wv~gL~~ 120 (1092)
+.++++.|+..|+.
T Consensus 85 ~~~~~~~W~~al~~ 98 (99)
T cd00900 85 SEEEAQEWVEALQQ 98 (99)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999864
No 57
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.95 E-value=0.12 Score=64.02 Aligned_cols=107 Identities=19% Similarity=0.401 Sum_probs=82.9
Q ss_pred HHHHHhcCCeEEEE---ecCCCceeEeEEEeCCCCeEEEec-CCccceEEccceeecccCCCChh---------hhcC-C
Q 001361 18 AITALKKGAHLLKY---GRRGKPKFCPFRLANDESILIWIS-GKEEKHLKLSHVSRIIPGQRTPI---------FQRY-P 83 (1092)
Q Consensus 18 ~l~~L~~Gt~l~K~---~~~~kp~~r~f~L~~d~~~l~W~~-~k~~~~i~l~~I~eVr~G~~t~~---------f~~~-~ 83 (1092)
....|+.|+.|+|+ ..-+.| -.+++|+..-.|.|.. .++--.+++..|++.|.|+.... |..- .
T Consensus 13 v~~~L~~G~~fikwddest~~~~--v~lrvDp~gffLYW~~q~~e~~~ldi~~i~d~r~g~~a~~pkd~klr~~~~~~~~ 90 (1189)
T KOG1265|consen 13 VTDILRDGSKFIKWDDESTTSTP--VTLRVDPNGFFLYWTYQNKEVDNLDISSIRDARTGRYAKLPKDPKLREVLELGPP 90 (1189)
T ss_pred ccHHHcCCceEEEeccccccccc--eEEEECCCceEEEEecCCCceeehhhhHHhhhhcchhccCCCCcccchheecCCc
Confidence 46789999999999 333445 6689999999999986 45666789999999999975521 1111 1
Q ss_pred CCCCCCCeEEEEEcC-----ceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 84 RPEKEYQSFSLIYND-----RSLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 84 ~~~~~~~~FSiiy~~-----rsLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
+...++.-.+|++|. ..++|||...+++.+|..||-.|+.+..
T Consensus 91 d~s~eek~lTVvsG~d~vN~~f~nfv~~~~~~ak~w~~~~~~l~~~~~ 138 (1189)
T KOG1265|consen 91 DRSLEEKTLTVVSGPDLVNLTFLNFVAMQENVAKLWTAGLLKLAKSLL 138 (1189)
T ss_pred ccccccceEEEEecCCcccceEEEEeeeeHHHHHHHHHHHHHHHHHHH
Confidence 235567889999986 7899999999999999999988876543
No 58
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=94.86 E-value=0.044 Score=66.39 Aligned_cols=98 Identities=24% Similarity=0.316 Sum_probs=72.7
Q ss_pred HhcCCeEEEE--ecC--CC--ceeEeEEEeCCCCeEEEecCC---ccceEEccceeecccCCCChhhhcCCCCCCCCCeE
Q 001361 22 LKKGAHLLKY--GRR--GK--PKFCPFRLANDESILIWISGK---EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSF 92 (1092)
Q Consensus 22 L~~Gt~l~K~--~~~--~k--p~~r~f~L~~d~~~l~W~~~k---~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~F 92 (1092)
+.+|-.|+|+ +|. |+ -|.|+|+|... .|.|..++ +...|+|++|+.|-.=. ...+.-..+|
T Consensus 565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~--~Ls~~Ksp~~q~~~~Ipl~nI~avEkle--------e~sF~~knv~ 634 (800)
T KOG2059|consen 565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTE--ELSYAKSPGKQPIYTIPLSNIRAVEKLE--------EKSFKMKNVF 634 (800)
T ss_pred eecccceEeccccccchhhhhhhheEEEeccc--eeEEecCCccCcccceeHHHHHHHHHhh--------hhccCCCceE
Confidence 3677788888 222 21 37789999875 68887643 44569999997664111 1134556899
Q ss_pred EEEEcCceeEEEeCCHHHHHHHHHHHHHHHHcccccc
Q 001361 93 SLIYNDRSLDLICKDKDEAEVWFTGLKALISRSHYRK 129 (1092)
Q Consensus 93 Siiy~~rsLDLia~~~~e~~~Wv~gL~~Li~~~~~~~ 129 (1092)
.|||.+|+|-|.|++-.|++.|+..|+......+++.
T Consensus 635 qVV~~drtly~Q~~n~vEandWldaL~kvs~~N~~rL 671 (800)
T KOG2059|consen 635 QVVHTDRTLYVQAKNCVEANDWLDALRKVSCCNQNRL 671 (800)
T ss_pred EEEecCcceeEecCCchHHHHHHHHHHHHhccCcchh
Confidence 9999999999999999999999999999887776553
No 59
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=94.77 E-value=0.2 Score=48.65 Aligned_cols=93 Identities=22% Similarity=0.349 Sum_probs=47.5
Q ss_pred eEEEEecC-CCc-eeEeEEEeCCCCeEEEecC-C--ccceEEcccee-ecccCC---CChhhhc------CCCCCCCCCe
Q 001361 27 HLLKYGRR-GKP-KFCPFRLANDESILIWISG-K--EEKHLKLSHVS-RIIPGQ---RTPIFQR------YPRPEKEYQS 91 (1092)
Q Consensus 27 ~l~K~~~~-~kp-~~r~f~L~~d~~~l~W~~~-k--~~~~i~l~~I~-eVr~G~---~t~~f~~------~~~~~~~~~~ 91 (1092)
.|.|-+.+ +++ +.|+|-|.. ...|.++.. . ....|..+... -++.|. ..+.+.. ..........
T Consensus 4 ~l~K~~~~~~kgWk~RwFiL~k-~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (112)
T PF15413_consen 4 YLYKWGNKFGKGWKKRWFILRK-DGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIHLKV 82 (112)
T ss_dssp EEEE--TTS-S--EEEEEEEE--TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-SSEE
T ss_pred eEEEecCCCCcCccccEEEEEe-CCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCcCCCC
Confidence 35566555 555 778888887 488888864 1 11112111111 111111 1111111 1123445578
Q ss_pred EEEEEcCceeEEEeCCHHHHHHHHHHHHH
Q 001361 92 FSLIYNDRSLDLICKDKDEAEVWFTGLKA 120 (1092)
Q Consensus 92 FSiiy~~rsLDLia~~~~e~~~Wv~gL~~ 120 (1092)
|+|..+.|+|.|.|++.+|...|+..|+.
T Consensus 83 ~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~ 111 (112)
T PF15413_consen 83 FSIFTPTKTFHLRCETREDRYDWIEALQE 111 (112)
T ss_dssp EEEE-SS-EEEEEESSHHHHHHHHHHHHH
T ss_pred cEEECCCcEEEEEECCHHHHHHHHHHHHh
Confidence 88888889999999999999999999874
No 60
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.67 E-value=0.24 Score=48.82 Aligned_cols=86 Identities=24% Similarity=0.291 Sum_probs=55.2
Q ss_pred eEEEEe-cCCCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEE-----
Q 001361 27 HLLKYG-RRGKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIY----- 96 (1092)
Q Consensus 27 ~l~K~~-~~~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy----- 96 (1092)
+|.|-+ ..+.-+.|+|.|.. ..|.++.+. ....|+|+++. |..... .....||.|+.
T Consensus 5 ~L~K~~~~~~~WkkRwfvL~~--~~L~yyk~~~~~~~~g~I~L~~~~-v~~~~~----------~~~~~~F~i~~~~~~~ 71 (125)
T cd01252 5 WLLKQGGRVKTWKRRWFILTD--NCLYYFEYTTDKEPRGIIPLENVS-IREVED----------PSKPFCFELFSPSDKQ 71 (125)
T ss_pred EEEEeCCCCCCeEeEEEEEEC--CEEEEEcCCCCCCceEEEECCCcE-EEEccc----------CCCCeeEEEECCcccc
Confidence 455554 33445888999975 468777642 35568888653 222211 11234665554
Q ss_pred ---------------cC-ceeEEEeCCHHHHHHHHHHHHHHHHcc
Q 001361 97 ---------------ND-RSLDLICKDKDEAEVWFTGLKALISRS 125 (1092)
Q Consensus 97 ---------------~~-rsLDLia~~~~e~~~Wv~gL~~Li~~~ 125 (1092)
+. ++.-|.|++.+|++.|+.+|+..+...
T Consensus 72 ~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 72 QIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPN 116 (125)
T ss_pred ccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 22 456699999999999999999998653
No 61
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.39 E-value=0.22 Score=47.41 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=51.8
Q ss_pred HhcCCeEEEEecCCCceeEeEEEeCCCCeEEEecCCc---c-ceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc
Q 001361 22 LKKGAHLLKYGRRGKPKFCPFRLANDESILIWISGKE---E-KHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN 97 (1092)
Q Consensus 22 L~~Gt~l~K~~~~~kp~~r~f~L~~d~~~l~W~~~k~---~-~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~ 97 (1092)
+++|-+..+-...+.=+.|+|.|.+| ..|.++.++. + ..++|..+. |..+.--. .......+|.|.+-
T Consensus 2 ~k~G~L~K~g~~~~~Wk~R~f~L~~~-~~l~~yk~~~~~~~~~~i~l~~~~-v~~~~~~~------~~~~~~~~F~i~~~ 73 (102)
T cd01241 2 VKEGWLHKRGEYIKTWRPRYFLLKSD-GSFIGYKEKPEDGDPFLPPLNNFS-VAECQLMK------TERPRPNTFIIRCL 73 (102)
T ss_pred cEEEEEEeecCCCCCCeeEEEEEeCC-CeEEEEecCCCccCccccccCCeE-Eeeeeeee------ccCCCcceEEEEec
Confidence 34555544444445558899999987 5555443321 1 134554442 11110000 01122358999842
Q ss_pred C--cee--EEEeCCHHHHHHHHHHHHHH
Q 001361 98 D--RSL--DLICKDKDEAEVWFTGLKAL 121 (1092)
Q Consensus 98 ~--rsL--DLia~~~~e~~~Wv~gL~~L 121 (1092)
+ .++ -+.|++++|++.|+.+|+.+
T Consensus 74 ~~~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 74 QWTTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred cCCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 2 223 56799999999999999865
No 62
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.35 E-value=0.39 Score=46.58 Aligned_cols=92 Identities=13% Similarity=0.246 Sum_probs=60.0
Q ss_pred HHhcCCeEEEEe-cCCCceeEeEEEeCCCCeEEEecCCcc-c--------eEEccce-----eecccCCCChhhhcCCCC
Q 001361 21 ALKKGAHLLKYG-RRGKPKFCPFRLANDESILIWISGKEE-K--------HLKLSHV-----SRIIPGQRTPIFQRYPRP 85 (1092)
Q Consensus 21 ~L~~Gt~l~K~~-~~~kp~~r~f~L~~d~~~l~W~~~k~~-~--------~i~l~~I-----~eVr~G~~t~~f~~~~~~ 85 (1092)
++.+|.. +|+. ++++++.|+|+|=.| .|+.+..+.. . .+.+.+. .+|.--..+
T Consensus 4 lI~EG~L-~ki~~~~~~~q~R~~FLFd~--~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~--------- 71 (112)
T cd01261 4 FIMEGTL-TRVGPSKKAKHERHVFLFDG--LMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDS--------- 71 (112)
T ss_pred ccccCcE-EEEecccCCcceEEEEEecC--eEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCC---------
Confidence 4566765 4664 467899999999877 4555433211 1 2333322 223222222
Q ss_pred CCCCCeEEEEEc-CceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 86 EKEYQSFSLIYN-DRSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 86 ~~~~~~FSiiy~-~rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
+....+|-|+-. .+++-|.|++++|-+.|+..|..++.+
T Consensus 72 ~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 72 SEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred cccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 223578999986 489999999999999999999888753
No 63
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=94.34 E-value=0.0039 Score=73.36 Aligned_cols=65 Identities=28% Similarity=0.739 Sum_probs=53.2
Q ss_pred eecccccc----ccccCCCC-CcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhh
Q 001361 649 LHKWVSGV----DQSMCSGC-RIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGK 715 (1092)
Q Consensus 649 ~~kwvs~~----d~s~C~~C-~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~ 715 (1092)
.+.|+.++ .-..|+.| +..|....|+|||+.||...|.+|...+.....-+. +.|.++|+.|+..
T Consensus 313 l~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~gs--e~~Adg~Dq~psv 382 (1141)
T KOG1811|consen 313 LHNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCGS--ENPADGCDQCPSV 382 (1141)
T ss_pred hhhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhcccc--cCcccccccccch
Confidence 56788887 45678775 888888889999999999999999998877655443 5789999999854
No 64
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=92.62 E-value=0.1 Score=68.19 Aligned_cols=49 Identities=33% Similarity=0.942 Sum_probs=38.0
Q ss_pred ccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhhccc
Q 001361 659 SMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKAT 720 (1092)
Q Consensus 659 s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~~~~ 720 (1092)
..|..|. +...++|||+.||.+||..|. +...+.+|+|..|+.+.....
T Consensus 6 ~~~~~~~---t~~~~~~~~~~~g~~~~~~~~----------~~~~~~i~~~~~~~~~~~~~~ 54 (1598)
T KOG0230|consen 6 NVCYDCD---TSVNRRHHCRVCGRVFCSKCQ----------DSPETSIRVCNECRGQWEQGN 54 (1598)
T ss_pred cchhccc---cccccCCCCcccCceeccccC----------CCCccceeehhhhhhhccccC
Confidence 3456666 667789999999999999997 122347999999999876544
No 65
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.39 E-value=0.86 Score=43.17 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=50.9
Q ss_pred ceeEeEEEeC--CCCeEEEecC-C---ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCc-eeEEEeCCHH
Q 001361 37 PKFCPFRLAN--DESILIWISG-K---EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDR-SLDLICKDKD 109 (1092)
Q Consensus 37 p~~r~f~L~~--d~~~l~W~~~-k---~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~r-sLDLia~~~~ 109 (1092)
-+.|.|.|.. ....|.+... + +...|+|..+ .|++-++.. .....||-|+...+ +.-.+|.+.+
T Consensus 16 wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~-~V~~v~ds~--------~~r~~cFel~~~~~~~~y~~~a~~~ 86 (98)
T cd01245 16 WKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDA-YLYPVHDSL--------FGRPNCFQIVERALPTVYYSCRSSE 86 (98)
T ss_pred cceeEEEEecCCCCceEEEEcCCCCCCccceeecccc-EEEEccccc--------cCCCeEEEEecCCCCeEEEEeCCHH
Confidence 3677888853 3356655542 2 2334677777 777665531 22247999998775 7777888779
Q ss_pred HHHHHHHHHHH
Q 001361 110 EAEVWFTGLKA 120 (1092)
Q Consensus 110 e~~~Wv~gL~~ 120 (1092)
|++.|+..|+.
T Consensus 87 er~~Wi~~l~~ 97 (98)
T cd01245 87 ERDKWIESLQA 97 (98)
T ss_pred HHHHHHHHHhc
Confidence 99999999875
No 66
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=91.99 E-value=2 Score=41.35 Aligned_cols=96 Identities=17% Similarity=0.276 Sum_probs=56.3
Q ss_pred CeEEEEecCCCceeEeEEE--eCCCCeEEEe-c--------CCccceEEccceeecccCCCChhhhcCCCCCCCCCeEEE
Q 001361 26 AHLLKYGRRGKPKFCPFRL--ANDESILIWI-S--------GKEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSL 94 (1092)
Q Consensus 26 t~l~K~~~~~kp~~r~f~L--~~d~~~l~W~-~--------~k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSi 94 (1092)
+.|+|..|+|.-|.|.+.+ +.. .+++=. . +++++.|- ..|...-..-.-+...+...+...|-|
T Consensus 1 ~eLlk~tr~G~l~~k~Vsvyink~-~qVilKmKskhv~Gafskkkk~VV----~~V~~~~~awpgr~~~e~~~~~~yfgL 75 (110)
T PF08458_consen 1 GELLKRTRKGDLHWKTVSVYINKK-GQVILKMKSKHVGGAFSKKKKSVV----LDVCSEIPAWPGRELREDGEERRYFGL 75 (110)
T ss_pred CcceEecCCCceEEEEEEEEECCC-cEEEEEeecchhhhhhhcCCceEE----EEEccCcccCCCcccccCCceEEEEEE
Confidence 3588889999888777655 343 344332 2 22334332 222221100000001111223356666
Q ss_pred EEcCceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 95 IYNDRSLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 95 iy~~rsLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
-.....+.|.|+|..+.+.|+.|+++||....
T Consensus 76 ~T~~G~vEfec~~~~~~k~W~~gI~~mL~~~~ 107 (110)
T PF08458_consen 76 KTAQGVVEFECDSQREYKRWVQGIQHMLSQVA 107 (110)
T ss_pred EecCcEEEEEeCChhhHHHHHHHHHHHHHHhh
Confidence 66668999999999999999999999997643
No 67
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=90.24 E-value=5.6 Score=43.79 Aligned_cols=63 Identities=29% Similarity=0.484 Sum_probs=37.1
Q ss_pred CCeEEEEEeCCcEEEeCCccCCCCccCCC----CCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEee
Q 001361 366 EHHTCAVTLSGDMYTWGGSNCNFGLLGHG----NEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFG 437 (1092)
Q Consensus 366 ~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g----~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG 437 (1092)
..|++++- ++++|.||...+..|.+..- .....|.-.+|.+.+.+ +-..|++++-.+ +.|.||
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPg-------aRDGHsAcV~gn-~MyiFG 146 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPG-------ARDGHSACVWGN-QMYIFG 146 (392)
T ss_pred cCceEEEE-cceEEEEcCccCcccccceeeeeccccccccccceeeecCC-------ccCCceeeEECc-EEEEec
Confidence 35776554 78999999765555655432 22334444444443332 234588877644 789888
No 68
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=89.89 E-value=4.2 Score=54.62 Aligned_cols=111 Identities=16% Similarity=0.119 Sum_probs=64.1
Q ss_pred CCCCeEEEE-eeCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEEEcCCE-EEEEEcCCeEEE
Q 001361 526 VEPNFCQVS-CGHSLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYH-VAVLTSRTEVYT 603 (1092)
Q Consensus 526 ~~~~I~~Ia-~G~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~H-slaLT~dG~Vy~ 603 (1092)
.+..|..++ .+.++.++|+..|++-..= ..-.|..+...-....|..|++-..| -++||.+|++|.
T Consensus 701 ~~~~i~a~Avv~~~~fvald~qg~lt~h~------------k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~ 768 (1774)
T PF11725_consen 701 EDRVITAFAVVNDNKFVALDDQGDLTAHQ------------KPGRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFR 768 (1774)
T ss_pred CcCcceeEEEEcCCceEEeccCCcccccc------------CCCCCccCCCCCCCcchhheeeccccceeEecCCCceee
Confidence 333444443 3566777777777665421 01114444432224569999998886 578999999997
Q ss_pred EeCCCCCCCCCCCCCCcccCceeeeccCCceeeEEecCCcceeeee
Q 001361 604 WGKGANGRLGHGDTDDRNFPSLVEALKDKQVKSIVCGTSFTAAICL 649 (1092)
Q Consensus 604 WG~n~~GQLG~G~~~~~~~P~~V~~l~~~~V~~IacG~~~T~al~~ 649 (1092)
-=.-..-..-.++ ......++|..+.+..|..+....+|.+.+..
T Consensus 769 ~~k~~WQ~~~~~~-~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~ 813 (1774)
T PF11725_consen 769 LPKEAWQGNAEGD-QMAAKWQKVALPDEQPVKSLRTNDDNHLSAQI 813 (1774)
T ss_pred cCHHHhhCcccCC-ccccCceeccCCCCCchhhhhcCCCCceEEEe
Confidence 4332211111111 11244555555566778888888888887764
No 69
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.84 E-value=2.3 Score=41.77 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=56.6
Q ss_pred ceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcC--CCCCCCCCeEEEEEcCceeEEEeCCHHH
Q 001361 37 PKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRY--PRPEKEYQSFSLIYNDRSLDLICKDKDE 110 (1092)
Q Consensus 37 p~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~--~~~~~~~~~FSiiy~~rsLDLia~~~~e 110 (1092)
-+.|.|.|.+ ..|.+..+. ....|.++.--.|..|.....-... .+.......|.|...+|+|-|.|+|..+
T Consensus 33 w~kRWFvlr~--s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~ 110 (121)
T cd01254 33 WQKRWFIVKE--SFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKSSRK 110 (121)
T ss_pred CcceeEEEeC--CEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcEEEEEeCCHHH
Confidence 4667788884 577776533 3345677777777777654321111 1122335789998899999999999999
Q ss_pred HHHHHHHHHH
Q 001361 111 AEVWFTGLKA 120 (1092)
Q Consensus 111 ~~~Wv~gL~~ 120 (1092)
++.|+..|+.
T Consensus 111 ~~~Wi~~i~~ 120 (121)
T cd01254 111 LKQWMASIED 120 (121)
T ss_pred HHHHHHHHHh
Confidence 9999999863
No 70
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=88.81 E-value=1.8 Score=41.49 Aligned_cols=67 Identities=27% Similarity=0.364 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAV---AGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~---a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
++|+..|-.|...|..+.+.+..+--...+++..++.- +.+--++.+..|+-|+.|..+++++.++|
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888888888888887776653 33444455556777777777776665543
No 71
>PRK15396 murein lipoprotein; Provisional
Probab=88.66 E-value=2 Score=38.90 Aligned_cols=48 Identities=15% Similarity=0.291 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKS 920 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~ 920 (1092)
.-+|.+|.+||+.|..+.+++..+++..+..++. |.|||++ |-+=|.-
T Consensus 24 ~~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~----a~~eA~r---aN~RlDn 71 (78)
T PRK15396 24 NAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA----AKDDAAR---ANQRLDN 71 (78)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHH
Confidence 3488899999999999999999999998887777 7789988 5554443
No 72
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=88.36 E-value=0.31 Score=47.78 Aligned_cols=51 Identities=24% Similarity=0.669 Sum_probs=38.3
Q ss_pred ccccCCCCCcCCcccc-cccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhh
Q 001361 657 DQSMCSGCRIPFNFKR-KRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKL 716 (1092)
Q Consensus 657 d~s~C~~C~~~F~~~~-krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l 716 (1092)
....|..|..+|+|.. ..+.|..|...+|..|+.. ....+.-+|..|+.+.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---------~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---------SKKEPIWLCKVCQKQR 104 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---------TSSSCCEEEHHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc---------CCCCCCEEChhhHHHH
Confidence 4568999999999775 5677999999999999765 1235577899998753
No 73
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=87.32 E-value=4.1 Score=38.60 Aligned_cols=35 Identities=29% Similarity=0.524 Sum_probs=31.6
Q ss_pred CCCeEEEEEcC---ceeEEEeCCHHHHHHHHHHHHHHH
Q 001361 88 EYQSFSLIYND---RSLDLICKDKDEAEVWFTGLKALI 122 (1092)
Q Consensus 88 ~~~~FSiiy~~---rsLDLia~~~~e~~~Wv~gL~~Li 122 (1092)
+.++|.|+-.+ .++.|-|+|+++-+.|+..|+.+|
T Consensus 58 d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 58 EPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 46999998865 699999999999999999999887
No 74
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=86.82 E-value=0.093 Score=65.98 Aligned_cols=132 Identities=16% Similarity=0.251 Sum_probs=89.0
Q ss_pred CCCEEEEEecCceEEEEEcCCeEEEEeCCCCCccCCC--CCCCCCcceEe-eccCCCcEEEEEeCCCeEEEEEeCCcEEE
Q 001361 304 VLDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHG--VDSDVSHPKLI-DALKNINVELVACGEHHTCAVTLSGDMYT 380 (1092)
Q Consensus 304 ~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g--~~~~~~~P~~V-~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~ 380 (1092)
..+++.|.+-.+..++|.+.|++|.|-....--|-.+ ...+...|..- -.+.+.+|+.+++..-..-++|++|+|.+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 3467777777778889999999999986543322221 11223333322 24567899999999999999999999999
Q ss_pred eCCccCCCCccCCCCC--cceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcc
Q 001361 381 WGGSNCNFGLLGHGNE--MSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGV 443 (1092)
Q Consensus 381 wG~n~~~~GqLG~g~~--~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQ 443 (1092)
|=+- +|.+-. ..+..-+++. ..++.+++..|...|+++...++-+|.||---+-+
T Consensus 453 WlDE------cgagV~fkLa~ea~Tkie--ed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 453 WLDE------CGAGVAFKLAHEAQTKIE--EDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred HHhh------hhhhhhhhhhhhhhhhhh--hhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 9644 222211 1112222332 45677888888899999999999999999654443
No 75
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=86.79 E-value=5 Score=33.88 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKS 920 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~ 920 (1092)
.-|.+|-++|..|..|.+++..+|..++..++ .|.|||++ |.+=|.-
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~----~ak~EAaR---AN~RlDN 49 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQ----AAKEEAAR---ANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHh
Confidence 45788999999999999999999998876654 57889998 5554443
No 76
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.65 E-value=5.5 Score=38.38 Aligned_cols=83 Identities=17% Similarity=0.346 Sum_probs=50.6
Q ss_pred eeEeEEEeCCCCeEEEecCCcc------ceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC--ceeEEEeCCHH
Q 001361 38 KFCPFRLANDESILIWISGKEE------KHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND--RSLDLICKDKD 109 (1092)
Q Consensus 38 ~~r~f~L~~d~~~l~W~~~k~~------~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~--rsLDLia~~~~ 109 (1092)
..|.|-+=.+..-+++.....+ -.|++++.-.|+.=..+++. ++...+-.+-|=|.|.. ++|-|.|++.+
T Consensus 20 W~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi--~a~~kDiP~IF~I~~~~~~~~lllLA~s~~ 97 (112)
T cd01242 20 WKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVY--RADAKEIPKIFQILYANEARDLLLLAPQTD 97 (112)
T ss_pred ceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHee--ecCcccCCeEEEEEeCCccceEEEEeCCch
Confidence 3444454445345566543211 23455443222222223322 24445567899999976 89999999999
Q ss_pred HHHHHHHHHHHHH
Q 001361 110 EAEVWFTGLKALI 122 (1092)
Q Consensus 110 e~~~Wv~gL~~Li 122 (1092)
|.+.||..|..-|
T Consensus 98 ek~kWV~~L~~~~ 110 (112)
T cd01242 98 EQNKWVSRLVKKI 110 (112)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998765
No 77
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=86.63 E-value=2.4 Score=38.82 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCR 912 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~ 912 (1092)
-+|.+|.+||+.|..|.++...+++..+..++. |.|||++..
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~a----Ak~EA~RAN 65 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKALRPQIYA----AKSEANRAN 65 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 479999999999999999999999887766655 678888833
No 78
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=86.13 E-value=5.7 Score=47.88 Aligned_cols=107 Identities=18% Similarity=0.250 Sum_probs=64.9
Q ss_pred ecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccC-CCcEEEEEeCC-CeEEEEEeCCcEEE-eCCccCCC
Q 001361 312 CGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALK-NINVELVACGE-HHTCAVTLSGDMYT-WGGSNCNF 388 (1092)
Q Consensus 312 ~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~-~~~I~~Ia~G~-~hs~aLT~dG~Vy~-wG~n~~~~ 388 (1092)
.|...+.+|+.+|++|.= +|...+...-...+... ...+.+|++|. ....+||.+|.||. -|-. ..
T Consensus 190 ~g~~~awAI~s~Gd~y~R---------tGvs~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVs--Rq 258 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR---------TGVSVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVS--RQ 258 (705)
T ss_pred CCceEEEEEecCCcEEEe---------ccccCCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEeccc--cc
Confidence 455566677888877732 22222211111111111 12588999999 77789999999764 4443 33
Q ss_pred CccCCCCCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEe
Q 001361 389 GLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTF 436 (1092)
Q Consensus 389 GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~w 436 (1092)
.+.|..=. ....|.. ...++.|+.|....-+||.+|.||.-
T Consensus 259 Np~GdsWk-dI~tP~~------a~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 259 NPEGDSWK-DIVTPRQ------ALEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCCCchhh-hccCccc------ccceEEEEeccceEEEEecCCcEEEE
Confidence 44443221 2223332 22499999999999999999999854
No 79
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=85.88 E-value=3.2 Score=40.47 Aligned_cols=91 Identities=14% Similarity=0.196 Sum_probs=55.8
Q ss_pred HhcCCeEEEEec---CCCceeEeEEEeCCCCeEEEecCCccceEEccceeecccCCCChhhhcC---------CCCCCCC
Q 001361 22 LKKGAHLLKYGR---RGKPKFCPFRLANDESILIWISGKEEKHLKLSHVSRIIPGQRTPIFQRY---------PRPEKEY 89 (1092)
Q Consensus 22 L~~Gt~l~K~~~---~~kp~~r~f~L~~d~~~l~W~~~k~~~~i~l~~I~eVr~G~~t~~f~~~---------~~~~~~~ 89 (1092)
|.+|+.+.=.++ +.|++.|.++|=++ .|+-....+++. ..+..+-.|+.. ...+.+.
T Consensus 6 l~Q~~f~v~~~~~~~~~K~~eR~vFLFe~--~lvfsk~~~~~~---------~~~~~~Y~yK~~ikls~l~l~e~v~gd~ 74 (114)
T cd01232 6 LLQDTFQVWDPKAGLIQKGRERRVFLFEQ--SIIFAKEVKKKK---------QFGNPKYIYKSKLQVSKMGLTEHVEGDP 74 (114)
T ss_pred EEEccEEEEeCCccccCCCceeEEEEeec--eEEEEEEeccCC---------CCCceeEEEecceeeeeeEeEEccCCCC
Confidence 455665554444 35899999999887 233322110000 001112222222 0123457
Q ss_pred CeEEEEEcC-----ceeEEEeCCHHHHHHHHHHHHHHHH
Q 001361 90 QSFSLIYND-----RSLDLICKDKDEAEVWFTGLKALIS 123 (1092)
Q Consensus 90 ~~FSiiy~~-----rsLDLia~~~~e~~~Wv~gL~~Li~ 123 (1092)
++|.|.+++ ++.-|.|.|.++-+.|+.-|+.|+.
T Consensus 75 ~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 75 CRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred ceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 899999966 3667999999999999999999885
No 80
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=85.43 E-value=3.3 Score=44.04 Aligned_cols=64 Identities=20% Similarity=0.315 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 930 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e 930 (1092)
+|+..+++.++..|+++++..+.+|+.++.+++++ ...++|+..+.+.-+-++.|..+++.+.+
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~ 124 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREESEEREELLEELEELKKELKELKK 124 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999888 55667774444444444444444444433
No 81
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=84.98 E-value=0.43 Score=56.68 Aligned_cols=85 Identities=20% Similarity=0.332 Sum_probs=62.6
Q ss_pred ceeEeEEEeCCCCeEEE-ecCCc----cceEEccceeecc-cCCCChhhhcCCCCCCCCCeEEEEEcCceeEEEeCCHHH
Q 001361 37 PKFCPFRLANDESILIW-ISGKE----EKHLKLSHVSRII-PGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDE 110 (1092)
Q Consensus 37 p~~r~f~L~~d~~~l~W-~~~k~----~~~i~l~~I~eVr-~G~~t~~f~~~~~~~~~~~~FSiiy~~rsLDLia~~~~e 110 (1092)
-+.|||.|+.- .|.+ ....+ .-.|+|+.|+.|+ .|++- +.......|-|+.-++|+=|-|+|..-
T Consensus 754 W~TrYFTLSgA--~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr-------~~rslpKAFEIFTAD~T~ILKaKDeKN 824 (851)
T KOG3723|consen 754 WKTRYFTLSGA--QLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKR-------RDRSLPKAFEIFTADKTYILKAKDEKN 824 (851)
T ss_pred hccceEEecch--hhhcccCCCCCCCCCCCccHHHhhhHHHHHhhh-------hhcccchhhheeecCceEEeecccccC
Confidence 36678888875 4555 32222 2349999999998 66421 111223568898899999999999999
Q ss_pred HHHHHHHHHHHHHccccccC
Q 001361 111 AEVWFTGLKALISRSHYRKG 130 (1092)
Q Consensus 111 ~~~Wv~gL~~Li~~~~~~~~ 130 (1092)
|+.|+..|+..++|+|.+..
T Consensus 825 AEEWlqCL~IavAHa~~r~~ 844 (851)
T KOG3723|consen 825 AEEWLQCLNIAVAHAKERES 844 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887643
No 82
>PLN02153 epithiospecifier protein
Probab=84.22 E-value=87 Score=36.17 Aligned_cols=16 Identities=19% Similarity=0.671 Sum_probs=11.7
Q ss_pred CeEEEEEcCCcEEEeec
Q 001361 422 WHTAVVTSAGQLFTFGD 438 (1092)
Q Consensus 422 ~Ht~aLt~dG~Vy~wG~ 438 (1092)
.|++++ .+++||.+|-
T Consensus 130 ~~~~~~-~~~~iyv~GG 145 (341)
T PLN02153 130 FHSMAS-DENHVYVFGG 145 (341)
T ss_pred eeEEEE-ECCEEEEECC
Confidence 566655 5679999984
No 83
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=84.14 E-value=8.7 Score=36.30 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=28.5
Q ss_pred CCCeEEEEEcC-ceeEEEeCCHHHHHHHHHHHHH
Q 001361 88 EYQSFSLIYND-RSLDLICKDKDEAEVWFTGLKA 120 (1092)
Q Consensus 88 ~~~~FSiiy~~-rsLDLia~~~~e~~~Wv~gL~~ 120 (1092)
...+|.|...+ +.+=|.|++.++++.|+..|+.
T Consensus 70 ~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 70 KKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred CceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 35789998755 8999999999999999999874
No 84
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=83.52 E-value=0.15 Score=64.23 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=85.1
Q ss_pred CCcEEEEEeCCCeEEEEEeCCcEEEeCCccCCCCccCC--CCCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcE
Q 001361 356 NINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGH--GNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQL 433 (1092)
Q Consensus 356 ~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~--g~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~V 433 (1092)
..+++.|.+-.+..++|..+|++|.|-+.. .--|.. ....+...|..-..-+.+.+|+.+++..-..-++|++|+|
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdE--SEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghl 450 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDE--SEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHL 450 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeeccc--ccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCch
Confidence 457888888888999999999999998762 222221 1112223344333346788999999999999999999999
Q ss_pred EEeecCCCcccCCCCCcccc--cceeeecCCCCeEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCC
Q 001361 434 FTFGDGTFGVLGHGDRISVS--TPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDG 503 (1092)
Q Consensus 434 y~wG~N~~GQLG~g~~~~~~--~P~~V~~l~~~~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n 503 (1092)
.+|=+- +|.|-..... .-+++ ...+..+++.-|...|+++..+ +..+|-||--
T Consensus 451 asWlDE----cgagV~fkLa~ea~Tki-eed~~maVqd~~~adhlaAf~~------------dniihWcGiV 505 (3015)
T KOG0943|consen 451 ASWLDE----CGAGVAFKLAHEAQTKI-EEDGEMAVQDHCCADHLAAFLE------------DNIIHWCGIV 505 (3015)
T ss_pred hhHHhh----hhhhhhhhhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHhh------------hceeeEEeee
Confidence 999532 3333111111 11111 2345566777788888888764 8899999943
No 85
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.57 E-value=66 Score=41.22 Aligned_cols=14 Identities=7% Similarity=-0.052 Sum_probs=7.6
Q ss_pred eEEecCCcceeeee
Q 001361 636 SIVCGTSFTAAICL 649 (1092)
Q Consensus 636 ~IacG~~~T~al~~ 649 (1092)
.+|.|-|..++|..
T Consensus 30 ~FA~G~WvGVvLDe 43 (1243)
T KOG0971|consen 30 QFAEGKWVGVVLDE 43 (1243)
T ss_pred ccccCceEEEEecc
Confidence 45555555555553
No 86
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.87 E-value=6 Score=44.83 Aligned_cols=54 Identities=22% Similarity=0.398 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCC
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLP 933 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp 933 (1092)
-+||.+|.+||-.|.++|.+.-.|-+.+.+.+.+ +||.=..|+++|+||-+|-.
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~--------------ske~Q~~L~aEL~elqdkY~ 286 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA--------------SKESQRQLQAELQELQDKYA 286 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777777777777766 88999999999999987743
No 87
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=80.73 E-value=13 Score=32.51 Aligned_cols=62 Identities=23% Similarity=0.163 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMA 929 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~ 929 (1092)
|+..|..+|+.|=+.|+++..|=..++.++.....-=+-=.+|..+|..=|+++..+||.|-
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 35667778888888888888888777777665443333334566667777888888888764
No 88
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=80.71 E-value=6.9 Score=43.00 Aligned_cols=68 Identities=25% Similarity=0.324 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCcc
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVGA 936 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~~ 936 (1092)
..|+..|...++.|+.+.+.+..++.+..+.+-++-....+|.++ +.+....+-.|..++.++|||+.
T Consensus 109 e~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~---i~e~~~~~~~~~~~L~~~l~~el 176 (239)
T COG1579 109 EDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAE---IREEGQELSSKREELKEKLDPEL 176 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCHHH
Confidence 556666666666666666666666666667776766666666666 78888888889999999999996
No 89
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=80.43 E-value=5.2 Score=41.65 Aligned_cols=64 Identities=22% Similarity=0.379 Sum_probs=45.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 859 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 859 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
.+++.....|+..|+.|+..|+..+..++.||..+.+.+-. +| +.+-|..|..++++|.+||=+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~------~e------l~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN------EE------LREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH------HH------HHHHHHHHHHHHHHHHHHHHH
Confidence 45566667779999999999999999999999888877644 22 344566666666666666543
No 90
>PLN02320 seryl-tRNA synthetase
Probab=78.77 E-value=5.3 Score=48.57 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=43.3
Q ss_pred chhhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhhHHHHHHHHHHHHHH
Q 001361 857 IVVDDAKRT-----SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEET----AKCRAAKDVIKSLTAQLKD 927 (1092)
Q Consensus 857 ~~~~~l~~~-----~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~----~k~~~ake~ik~l~~qlk~ 927 (1092)
.+.++++++ +.|+++|-.+-..|..+.+.+..|..+..|+++.. ...+|. ++.|..|+-|+.|..+|++
T Consensus 78 ~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~--~~~~~~~~l~~~~k~lk~~i~~le~~~~~ 155 (502)
T PLN02320 78 AVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMKGK--LEPSERQALVEEGKNLKEGLVTLEEDLVK 155 (502)
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555 57778888888888888888888888888777651 112221 2334455666666555444
Q ss_pred H
Q 001361 928 M 928 (1092)
Q Consensus 928 ~ 928 (1092)
+
T Consensus 156 ~ 156 (502)
T PLN02320 156 L 156 (502)
T ss_pred H
Confidence 4
No 91
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.26 E-value=9.5 Score=37.55 Aligned_cols=25 Identities=24% Similarity=0.427 Sum_probs=14.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhh
Q 001361 907 ETAKCRAAKDVIKSLTAQLKDMAEM 931 (1092)
Q Consensus 907 e~~k~~~ake~ik~l~~qlk~~~e~ 931 (1092)
|....++++.-+..|..+|++|-.|
T Consensus 59 ~~e~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 59 ENEELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455555566666666666554
No 92
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=78.08 E-value=13 Score=37.76 Aligned_cols=50 Identities=30% Similarity=0.366 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKD 916 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake 916 (1092)
.++..++-.+|.+|.++..+++.+|.++..+++++-..+ +|+.+....-|
T Consensus 27 e~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l-ee~~~~~~~~E 76 (143)
T PF12718_consen 27 EQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL-EESEKRKSNAE 76 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHhHH
Confidence 778888888999999999999999999999999977665 45555544433
No 93
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=77.95 E-value=7.9 Score=46.50 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=42.0
Q ss_pred chhhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 857 IVVDDAKRT-----SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVA---GEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 857 ~~~~~l~~~-----~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a---~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
.+.++++++ +.++++|-.|-..|..+.+.+..|..+..|++..+..-. .+--++.|+.|+-||.|.++++++
T Consensus 13 ~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 92 (425)
T PRK05431 13 AVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDEL 92 (425)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555 577777777777777777777777777777776532211 011123344555566665555444
No 94
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=77.84 E-value=14 Score=37.60 Aligned_cols=65 Identities=31% Similarity=0.357 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 930 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e 930 (1092)
.+|..+...++++|.++.++++.+|+.+.+++++|..-..+=..|.--.-.=+++|..+..++.+
T Consensus 65 lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~ 129 (143)
T PF12718_consen 65 LEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEE 129 (143)
T ss_pred HHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHH
Confidence 45555555578899999999999999999999988765544433333333345555554444433
No 95
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=77.48 E-value=17 Score=34.85 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=61.9
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCC
Q 001361 857 IVVDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQ---LKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLP 933 (1092)
Q Consensus 857 ~~~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~---~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp 933 (1092)
...|++.+.-++..+|+.+++.|+.+--....+|...+++ +++...-+.+=..+.++..+-++.+..+|.++.-.||
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIP 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4566666667888888889999999988888999888884 6666666666677777888899999999999998888
No 96
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=77.13 E-value=14 Score=35.58 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=45.2
Q ss_pred EecCCCceeEeEEEeCCCCeEEEecCCc----cceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc------Cce
Q 001361 31 YGRRGKPKFCPFRLANDESILIWISGKE----EKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN------DRS 100 (1092)
Q Consensus 31 ~~~~~kp~~r~f~L~~d~~~l~W~~~k~----~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~------~rs 100 (1092)
+.-+| -|.|+|.|. | ..|.++.+++ +..+.|.-..-++ ..+...+...|+|... .++
T Consensus 15 ~~~K~-~KrrwF~lk-~-~~L~YyK~kee~~~~p~i~lnl~gcev----------~~dv~~~~~kf~I~l~~ps~~~~r~ 81 (106)
T cd01237 15 LTLKG-YKQYWFTFR-D-TSISYYKSKEDSNGAPIGQLNLKGCEV----------TPDVNVAQQKFHIKLLIPTAEGMNE 81 (106)
T ss_pred hhhhh-heeEEEEEe-C-CEEEEEccchhcCCCCeEEEecCceEE----------cccccccccceEEEEecCCccCCeE
Confidence 33344 477778887 5 5676665443 3334432111111 1111112345666662 289
Q ss_pred eEEEeCCHHHHHHHHHHHHH
Q 001361 101 LDLICKDKDEAEVWFTGLKA 120 (1092)
Q Consensus 101 LDLia~~~~e~~~Wv~gL~~ 120 (1092)
.-|-|+|+++++.|+.+++.
T Consensus 82 y~l~cdsEeqya~Wmaa~rl 101 (106)
T cd01237 82 VWLRCDNEKQYAKWMAACRL 101 (106)
T ss_pred EEEECCCHHHHHHHHHHHHH
Confidence 99999999999999999874
No 97
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=76.81 E-value=6.7 Score=52.82 Aligned_cols=72 Identities=11% Similarity=0.087 Sum_probs=45.8
Q ss_pred CCCeEEEEeeCcEE-EEEecCCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEEEcCCEEEEEEcCC
Q 001361 527 EPNFCQVSCGHSLT-VALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRT 599 (1092)
Q Consensus 527 ~~~I~~Ia~G~~ht-laLt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG 599 (1092)
.-.|+.|++-..|. +|||.+|+||..=.-.+-..-.+........+|.. ..+..|..+....+|.+.+.-++
T Consensus 743 ~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~l-P~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 743 SGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVAL-PDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CcchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccC-CCCCchhhhhcCCCCceEEEecC
Confidence 35799999998865 68999999997543332211111111122333432 24567999999999988886544
No 98
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=76.76 E-value=13 Score=35.49 Aligned_cols=66 Identities=27% Similarity=0.303 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCC
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTTRQL-KEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLP 933 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~-~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp 933 (1092)
++..-+++...+.+..+..+.||+.+...| +||-.|+++|---+-+++.=...|..||++...+|-
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~ 68 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLE 68 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677788888899999999999998 999999988775555555555667777777655443
No 99
>PHA01750 hypothetical protein
Probab=76.55 E-value=6.8 Score=33.77 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
++|..+|+.|++.++.+-+.++++++..++|+.
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 889999999999999999999999999998875
No 100
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=75.69 E-value=1.9 Score=54.43 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=58.8
Q ss_pred eeEeEEEeCCCCeEEEecC----CccceEEccceeecccCC-CChhhhcCCCCCCCCCeEEEEEcCceeEEEeCCHHHHH
Q 001361 38 KFCPFRLANDESILIWISG----KEEKHLKLSHVSRIIPGQ-RTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAE 112 (1092)
Q Consensus 38 ~~r~f~L~~d~~~l~W~~~----k~~~~i~l~~I~eVr~G~-~t~~f~~~~~~~~~~~~FSiiy~~rsLDLia~~~~e~~ 112 (1092)
+.|+|.|++|..+|.+|.. +.+..|+|.+|+.|-.+. ++ ..+.--|-+-...|.-.|.|.+..+|.
T Consensus 1651 k~RwFVLd~~khqlrYYd~~edt~pkG~IdLaevesv~~~~~k~---------vdekgffdlktt~rvynf~a~nin~Aq 1721 (1732)
T KOG1090|consen 1651 KPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVESVALIGPKT---------VDEKGFFDLKTTNRVYNFCAQNINLAQ 1721 (1732)
T ss_pred ccceeEecCCccceeeecccccccccchhhhhhhhhhcccCccc---------cCccceeeeehhhHHHHHHhccchHHH
Confidence 7789999999999999984 467789999999887732 22 122223444445688999999999999
Q ss_pred HHHHHHHHHH
Q 001361 113 VWFTGLKALI 122 (1092)
Q Consensus 113 ~Wv~gL~~Li 122 (1092)
.|+..|+..|
T Consensus 1722 qWve~iqscl 1731 (1732)
T KOG1090|consen 1722 QWVECIQSCL 1731 (1732)
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 101
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=75.42 E-value=17 Score=39.21 Aligned_cols=61 Identities=26% Similarity=0.372 Sum_probs=46.5
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQV-------EELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 866 ~qev~~l~~qv-------~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
|+|..+|+.|. +.+.++.+.++.++++.+.++++|..--..=+. ++.+++++.|...|+++
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~--k~~~dF~~~Lq~~Lk~V 109 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTE--KVHNDFQDILQDELKDV 109 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh
Confidence 88888888854 577888888888899998888887765554433 46788888888888766
No 102
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=75.19 E-value=14 Score=44.25 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=37.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhh-------HHHHHHHHHHHHHHHHh
Q 001361 861 DAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK-CRA-------AKDVIKSLTAQLKDMAE 930 (1092)
Q Consensus 861 ~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k-~~~-------ake~ik~l~~qlk~~~e 930 (1092)
.+|+...|+.+|.+|-+.|+++-+.+...-+...++++.|+.-+..|..+ ... .+..|..|+.||+.+..
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~~ 144 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVLT 144 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33333455555555555555555555555555566777777665554442 222 34445555556655544
No 103
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.10 E-value=24 Score=36.02 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 922 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~ 922 (1092)
..|+.+|...++.|+.+++..+.|+...+.+...+-.-...+..+.|..||-+.-|.
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555544444444444444444444444444443333
No 104
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=74.69 E-value=88 Score=39.20 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=31.9
Q ss_pred EEecCCcEEEEeCCCCCCCCCCCCCCccceeeccccCC-CCEEEEEEcCCEEEEEEcCCeEEEEeC
Q 001361 542 ALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTK-NFVEEIACGDYHVAVLTSRTEVYTWGK 606 (1092)
Q Consensus 542 aLt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~-~~I~~Ia~G~~HslaLT~dG~Vy~WG~ 606 (1092)
+..-+|.||+.|..+. +... ..-....+.... ..+..+..+..+..+..-+|++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~-----~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSAL-----SSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCcc-----ceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 5556889999995432 1111 011111111111 112334556677777778999999985
No 105
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=74.52 E-value=1.1e+02 Score=37.54 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=66.9
Q ss_pred eCCCeEEEEEcCCcEEEeecCCCcccCCCCCccc-ccceeeecCCCCeEEEEecCC-ceEEEEEEeeecCCCCccCCCCe
Q 001361 419 CGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISV-STPREVDSLKGLRTVRAACGV-WHTAAVVEVMVGSSSSSNCSSGK 496 (1092)
Q Consensus 419 cG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~-~~P~~V~~l~~~~I~~VacG~-~ht~aLte~~~~~s~~~~~~~G~ 496 (1092)
.|.....||..+|.+|-= -|.....+. ..-+.|.... .+.+|++|. .-..+|++ +|.
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~GraW~~i~~~t--~L~qISagPtg~VwAvt~------------nG~ 248 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPCGRAWKVICPYT--DLSQISAGPTGVVWAVTE------------NGA 248 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCCCceeeecCCCC--ccceEeecCcceEEEEee------------CCc
Confidence 556677788899988842 122111110 0111111111 478889998 66667774 666
Q ss_pred E-EEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCcEEEEEecCCcEEEE
Q 001361 497 L-FTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTM 552 (1092)
Q Consensus 497 l-y~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLt~dG~Vy~w 552 (1092)
| |-.|-....+.|..-+ .+..|... ..++.|+.|.....+||.+|.||.-
T Consensus 249 vf~R~GVsRqNp~GdsWk-dI~tP~~a-----~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 249 VFYREGVSRQNPEGDSWK-DIVTPRQA-----LEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred EEEEecccccCCCCchhh-hccCcccc-----cceEEEEeccceEEEEecCCcEEEE
Confidence 5 5677777777776554 33444433 2389999999999999999999864
No 106
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=73.72 E-value=8.4 Score=46.86 Aligned_cols=89 Identities=20% Similarity=0.321 Sum_probs=58.6
Q ss_pred CCeEEEEecCCCceeEeEEEeCCCCeEEEec---C----CccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc
Q 001361 25 GAHLLKYGRRGKPKFCPFRLANDESILIWIS---G----KEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN 97 (1092)
Q Consensus 25 Gt~l~K~~~~~kp~~r~f~L~~d~~~l~W~~---~----k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~ 97 (1092)
...+.|+....+-+.|+|.+..+ .+.|.. + ...+.+.+.+|..|-+ +.... ....+.||.|-..
T Consensus 380 ~G~l~k~~~~~~wk~ry~~l~~~--~l~~~~~~~~~~~~~~~~~~~l~~~~~v~p-----v~~~~--~~~~~~~~~i~~~ 450 (478)
T PTZ00267 380 GGYLYKYSSDMRWKKRYFYIGNG--QLRISLSENPENDGVAPKSVNLETVNDVFP-----VPEVY--SQKHPNQLVLWFN 450 (478)
T ss_pred ceEEeccCCCcchhhheEEecCC--ceEEEeccccccCCCCCccccHHHhccccc-----ccHHh--cCCCCceEEEEec
Confidence 44567887766678899999765 444432 1 1234456666655522 21111 1234678999774
Q ss_pred C-ceeEEEeCCHHHHHHHHHHHHHHH
Q 001361 98 D-RSLDLICKDKDEAEVWFTGLKALI 122 (1092)
Q Consensus 98 ~-rsLDLia~~~~e~~~Wv~gL~~Li 122 (1092)
. +.+-++|++++|++.|+..|+..+
T Consensus 451 ~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 451 NGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred CCcEEEEecCChHHHHHHHHHHHHHh
Confidence 4 888899999999999999998765
No 107
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=73.67 E-value=2.8 Score=55.55 Aligned_cols=34 Identities=29% Similarity=0.972 Sum_probs=30.6
Q ss_pred ccccccccCCCCCcCCcccccccccccccceEEecc
Q 001361 653 VSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTC 688 (1092)
Q Consensus 653 vs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~C 688 (1092)
+.|.....|..|.+.|.-.||+||| ||.+||.+|
T Consensus 92 m~d~s~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~ 125 (1598)
T KOG0230|consen 92 MPDSSSKECYDCEQKFETFRRKHHC--CGQIFCSSC 125 (1598)
T ss_pred CCccccchhhhhccchhhhhccccc--CccccCCcc
Confidence 4566667899999999999999999 999999999
No 108
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=72.90 E-value=14 Score=34.77 Aligned_cols=81 Identities=22% Similarity=0.327 Sum_probs=52.1
Q ss_pred HhcCCeEEEEecCCCceeEeEEEeCCCCeEEEec------CCccc-----eEEccceeecccCCCChhhhcCCCCCCCCC
Q 001361 22 LKKGAHLLKYGRRGKPKFCPFRLANDESILIWIS------GKEEK-----HLKLSHVSRIIPGQRTPIFQRYPRPEKEYQ 90 (1092)
Q Consensus 22 L~~Gt~l~K~~~~~kp~~r~f~L~~d~~~l~W~~------~k~~~-----~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~ 90 (1092)
|.+-..|.|+. +|+||.|.|+|=.| .|+... .+..+ .|+|+||.-.-. .|+-...
T Consensus 3 Lv~eg~lvel~-~~~rK~R~~FLFnD--lLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~-----~~~~~~~------ 68 (96)
T cd01228 3 LVKDSFLVELV-EGSRKLRHLFLFTD--VLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE-----PFRIHNK------ 68 (96)
T ss_pred ccccceeeeeh-hCCCcceEEEeecc--EEEEEEeeeccCccccccceeEEEEhHHheecch-----hhhcccc------
Confidence 33445678888 55899999999998 344433 12122 588887743222 1222211
Q ss_pred eEEEEEcCceeEEEeCCHHHHHHHHHHHHHHH
Q 001361 91 SFSLIYNDRSLDLICKDKDEAEVWFTGLKALI 122 (1092)
Q Consensus 91 ~FSiiy~~rsLDLia~~~~e~~~Wv~gL~~Li 122 (1092)
..+|.-+.|.++.|...|+..++-|.
T Consensus 69 ------~~KSf~~~asS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 69 ------NGKSYTFLLSSDYERSEWRESIQKLQ 94 (96)
T ss_pred ------CCceEEEEecCHHHHHHHHHHHHHHh
Confidence 12666678899999999999988764
No 109
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=72.80 E-value=13 Score=44.62 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhhHHHHHHHHHHHHHHHHh
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAG----EETAKCRAAKDVIKSLTAQLKDMAE 930 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~----ee~~k~~~ake~ik~l~~qlk~~~e 930 (1092)
.+++.|-.+-..|..+.+.+..|..+..|++.+...-.. +=.++.|..|+-||.|..+++++.+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666655322111 1112334556666666665555433
No 110
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=72.51 E-value=7.1 Score=37.43 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=59.7
Q ss_pred eeEeEEEeCCCCeEEEecCC---ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC-ceeEEEeCCHHHHHH
Q 001361 38 KFCPFRLANDESILIWISGK---EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDEAEV 113 (1092)
Q Consensus 38 ~~r~f~L~~d~~~l~W~~~k---~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rsLDLia~~~~e~~~ 113 (1092)
..|+|+|=|+ +|-|++.. +..-|.+++|.+|..-... .+.+.|..|..++ +-+=|-|.|+-++..
T Consensus 21 Q~Ry~~LfPN--RLE~~~~~~~~~~eLi~M~~i~~V~~e~~~---------iK~~~CI~ik~k~~~k~vlt~~d~i~l~q 89 (116)
T cd01240 21 QTRYFKLYPN--RLELYGESEANKPELITMDQIEDVSVEFQQ---------IKEENCILLKIRDEKKIVLTNSDEIELKQ 89 (116)
T ss_pred HHHHheeCcc--eeeecccccccCCcEEEeehhhhcchhhee---------eccCceEEEEEcCCceEEEecCCcHHHHH
Confidence 4578899996 78887632 3344788999988755222 4668899999966 779999999999999
Q ss_pred HHHHHHHHHHccc
Q 001361 114 WFTGLKALISRSH 126 (1092)
Q Consensus 114 Wv~gL~~Li~~~~ 126 (1092)
|..-|+......|
T Consensus 90 W~~elr~a~r~Sq 102 (116)
T cd01240 90 WKKELRDAHRESQ 102 (116)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887665544
No 111
>PLN02678 seryl-tRNA synthetase
Probab=72.36 E-value=13 Score=44.86 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=44.8
Q ss_pred chhhhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhhHHHHHHHHHHHHH
Q 001361 857 IVVDDAKRT------SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEE----TAKCRAAKDVIKSLTAQLK 926 (1092)
Q Consensus 857 ~~~~~l~~~------~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee----~~k~~~ake~ik~l~~qlk 926 (1092)
.+...++++ +.|+++|-.|-..|..+.+.+..|.....|++.... ...|+ .++.+..|+-|+.|..+++
T Consensus 17 ~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k-~~~~~~~~l~~~~~~Lk~ei~~le~~~~ 95 (448)
T PLN02678 17 LIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLK-IAKEDATELIAETKELKKEITEKEAEVQ 95 (448)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555 467777777777777777777777777777776422 11222 2344556677777766655
Q ss_pred HHHh
Q 001361 927 DMAE 930 (1092)
Q Consensus 927 ~~~e 930 (1092)
++.+
T Consensus 96 ~~~~ 99 (448)
T PLN02678 96 EAKA 99 (448)
T ss_pred HHHH
Confidence 5433
No 112
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=72.11 E-value=9.7 Score=43.77 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=26.0
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHhhCCCcc
Q 001361 906 EETAKCRAAKDVIKSLTAQLKDMAEMLPVGA 936 (1092)
Q Consensus 906 ee~~k~~~ake~ik~l~~qlk~~~e~lp~~~ 936 (1092)
||.+..+..++-||....++.||..-||...
T Consensus 65 e~~~~i~~L~~~Ik~r~~~l~DmEa~LPkkN 95 (330)
T PF07851_consen 65 EERELIEKLEEDIKERRCQLFDMEAFLPKKN 95 (330)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhCCCCC
Confidence 6777777888889998899999998888763
No 113
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=71.70 E-value=9.1 Score=44.10 Aligned_cols=107 Identities=23% Similarity=0.398 Sum_probs=68.2
Q ss_pred hHHHHHHHHhcCC-eE---EEEecCCCceeEeEEEeCCCCeEEEecCCcc-------------ceEEccceeecccCCCC
Q 001361 14 DIELAITALKKGA-HL---LKYGRRGKPKFCPFRLANDESILIWISGKEE-------------KHLKLSHVSRIIPGQRT 76 (1092)
Q Consensus 14 ~i~~~l~~L~~Gt-~l---~K~~~~~kp~~r~f~L~~d~~~l~W~~~k~~-------------~~i~l~~I~eVr~G~~t 76 (1092)
..|+|+++||+-. .. +||.|.--|+++.=.+-.+ +=|+..... +.+....=.+.++=+-+
T Consensus 147 tHdeAVqaLKraGkeV~levKy~REvtPy~kk~sivs~---vgWe~~~p~sp~~~~~~dsp~~~~~~~~~d~k~IpLKm~ 223 (506)
T KOG3551|consen 147 THDEAVQALKRAGKEVLLEVKYMREVTPYFKKESIVSE---VGWEDPAPQSPSLGGSEDSPSPKHINFRKDRKTIPLKMA 223 (506)
T ss_pred chHHHHHHHHhhCceeeeeeeeehhcchhhccCccccc---cCcCCCCccCcccCCCCCCCCCCcccccccccccchhhH
Confidence 4678999997643 32 6888888888876555444 778864211 11111100111111222
Q ss_pred hhhhcCCCCCCCCCeEEEEEcC--ceeEEEeCCHHHHHHHHHHHHHHHH
Q 001361 77 PIFQRYPRPEKEYQSFSLIYND--RSLDLICKDKDEAEVWFTGLKALIS 123 (1092)
Q Consensus 77 ~~f~~~~~~~~~~~~FSiiy~~--rsLDLia~~~~e~~~Wv~gL~~Li~ 123 (1092)
-+-|+....++|.+||-|--.+ .||=|-|+|.++|+.|+.+|.+-+.
T Consensus 224 yvaR~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~ 272 (506)
T KOG3551|consen 224 YVARNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVN 272 (506)
T ss_pred HHHhhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHh
Confidence 3333445578889999988855 8999999999999999999876443
No 114
>PHA03098 kelch-like protein; Provisional
Probab=71.46 E-value=1.3e+02 Score=37.10 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=11.9
Q ss_pred CeEEEEEeCCcEEEeCCc
Q 001361 367 HHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 367 ~hs~aLT~dG~Vy~wG~n 384 (1092)
.|+++ .-+|+||.+|..
T Consensus 335 ~~~~~-~~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVT-VFNNRIYVIGGI 351 (534)
T ss_pred cceEE-EECCEEEEEeCC
Confidence 34444 458999999965
No 115
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=71.20 E-value=23 Score=37.92 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL----AVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~----~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
.-|-.+|..+++.++.+.+..+.+|+.+.++++-+- ....-|-.|.++|.+-++.|..+++.+--+|
T Consensus 117 L~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 117 LAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666788888888888888888888887544 3455677788888888888888877775544
No 116
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=71.20 E-value=14 Score=40.20 Aligned_cols=77 Identities=19% Similarity=0.247 Sum_probs=44.5
Q ss_pred CCcEEEEEeCCCeEEEEEeCCcEEEeCCccCCCCccCCCCCcceeccee----ecCCCCCCcEEEEEeCCC-eEEEEEcC
Q 001361 356 NINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKK----LNGPLEGIHVSSVSCGPW-HTAVVTSA 430 (1092)
Q Consensus 356 ~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~----v~~~l~~~~I~~IscG~~-Ht~aLt~d 430 (1092)
+.++..+.|-..+.++||.+|.+|+|--. . +.+-+... ...|.. .........|+.+..... .-++..++
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~--~-~k~~~~~~--Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn 86 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLK--K-GKAVLPPV--SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN 86 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECC--C-CeeccCCc--cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC
Confidence 34788899999999999999999999644 1 11111110 001100 000022345666655443 44556678
Q ss_pred CcEEEee
Q 001361 431 GQLFTFG 437 (1092)
Q Consensus 431 G~Vy~wG 437 (1092)
|+.|+|-
T Consensus 87 g~~y~y~ 93 (219)
T PF07569_consen 87 GDSYSYS 93 (219)
T ss_pred CCEEEec
Confidence 8888884
No 117
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=70.67 E-value=24 Score=37.36 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
|-.+....+..|+.+.|.+|.+||+++|++|+|-.+-+ .-|=-|++-+|++..
T Consensus 68 eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLt---ta~fqA~qKLksi~~ 120 (272)
T KOG4552|consen 68 EQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILT---TACFQANQKLKSIKE 120 (272)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33333446778899999999999999999999755432 235556666666543
No 118
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=69.79 E-value=32 Score=34.58 Aligned_cols=40 Identities=13% Similarity=0.367 Sum_probs=34.4
Q ss_pred CCCCCeEEEEEcC--ceeEEEeCCHHHHHHHHHHHHHHHHcc
Q 001361 86 EKEYQSFSLIYND--RSLDLICKDKDEAEVWFTGLKALISRS 125 (1092)
Q Consensus 86 ~~~~~~FSiiy~~--rsLDLia~~~~e~~~Wv~gL~~Li~~~ 125 (1092)
..+.+.|.|-+.+ ....|-|+|++.-+.|+.-|+.|+..-
T Consensus 77 ~gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q 118 (133)
T cd01227 77 KGDTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQ 118 (133)
T ss_pred CCCccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 3446899998865 688999999999999999999999763
No 119
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=69.69 E-value=60 Score=41.65 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=44.8
Q ss_pred eCCCeEEEEEeCCc-EEEeCCccCCCCccCCCCCc-ceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCc--EEEeecC
Q 001361 364 CGEHHTCAVTLSGD-MYTWGGSNCNFGLLGHGNEM-SLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQ--LFTFGDG 439 (1092)
Q Consensus 364 ~G~~hs~aLT~dG~-Vy~wG~n~~~~GqLG~g~~~-~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~--Vy~wG~N 439 (1092)
.++...++++.+|+ |+++|.+ |..-.-... ....|..|.. .+..|..|+|-..|.+.-++++. +|.++..
T Consensus 13 t~G~t~i~~d~~gefi~tcgsd----g~ir~~~~~sd~e~P~ti~~--~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSD----GDIRKWKTNSDEEEPETIDI--SGELVSSIACYSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCC----CceEEeecCCcccCCchhhc--cCceeEEEeecccceEEeeccceEEEeeCCCC
Confidence 34456666777775 6677755 222111111 1145655542 47789999999999999999886 5666655
Q ss_pred CCc
Q 001361 440 TFG 442 (1092)
Q Consensus 440 ~~G 442 (1092)
..+
T Consensus 87 ~~~ 89 (933)
T KOG1274|consen 87 EED 89 (933)
T ss_pred Ccc
Confidence 443
No 120
>PHA02713 hypothetical protein; Provisional
Probab=69.53 E-value=80 Score=39.40 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=14.1
Q ss_pred CCCeEEEEEeCCcEEEeCCc
Q 001361 365 GEHHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 365 G~~hs~aLT~dG~Vy~wG~n 384 (1092)
...+..+..-+|+||++|..
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 44444555668999999965
No 121
>PF15406 PH_6: Pleckstrin homology domain
Probab=68.50 E-value=13 Score=35.64 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=48.7
Q ss_pred EEEeCCCCeEEEecC---C--ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCceeEEEeCCHHHHHHHHH
Q 001361 42 FRLANDESILIWISG---K--EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFT 116 (1092)
Q Consensus 42 f~L~~d~~~l~W~~~---k--~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~rsLDLia~~~~e~~~Wv~ 116 (1092)
=+-+....-|+.++. | +...|.|.|+.+|...-.. -|++-.+++..-|.|.+++|++-||.
T Consensus 42 AwAsqTGKGLLF~~K~~dka~P~GiinLadase~~~~g~~--------------kF~f~~~G~khtF~A~s~aERD~Wv~ 107 (112)
T PF15406_consen 42 AWASQTGKGLLFFSKAEDKASPSGIINLADASEPEKDGSN--------------KFHFKIKGHKHTFEAASAAERDNWVA 107 (112)
T ss_pred hhhhccCceEEEEeccccccCCcceEehhhccccccCCCc--------------eEEEEeCCceeeeecCCHHHhccHHH
Confidence 344555555666652 2 4567999999998776555 37777788888899999999999999
Q ss_pred HHHH
Q 001361 117 GLKA 120 (1092)
Q Consensus 117 gL~~ 120 (1092)
.|+.
T Consensus 108 ~lk~ 111 (112)
T PF15406_consen 108 QLKA 111 (112)
T ss_pred Hhhc
Confidence 8863
No 122
>PRK11637 AmiB activator; Provisional
Probab=68.14 E-value=29 Score=41.70 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
.+|+.+++.+...+.++.+.++.+|+.+.+++.
T Consensus 60 ~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~ 92 (428)
T PRK11637 60 EKSVRQQQQQRASLLAQLKKQEEAISQASRKLR 92 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 123
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=67.87 E-value=20 Score=36.88 Aligned_cols=61 Identities=20% Similarity=0.358 Sum_probs=44.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 860 DDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 860 ~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
.+|...-.++.+|.++|.+|.+.|.-.|+||..+.+-|-- ||. -|-|-+|....++|.|||
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~------eem------Qe~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT------EEM------QEEIQELKKEVAGYRERL 139 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh------HHH------HHHHHHHHHHHHHHHHHH
Confidence 5566668899999999999999999999999887765432 333 234555555666666655
No 124
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=67.71 E-value=48 Score=37.96 Aligned_cols=52 Identities=29% Similarity=0.346 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCC
Q 001361 875 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLP 933 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp 933 (1092)
||..|+.+++.++..+-.++++++|-.. | +..-|+.+..|+.++.+|.+.|-
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~----e---lEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIR----E---LERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998875221 1 44578888889888888877764
No 125
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=67.10 E-value=31 Score=41.70 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=48.8
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCcc
Q 001361 866 SEEVIKLRA----QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVGA 936 (1092)
Q Consensus 866 ~qev~~l~~----qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~~ 936 (1092)
+.|+.+.++ |...|+-|.+++..||+++..|++|--.+--.+--...+.|-+|..-..|++|+.++--|..
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl 155 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKL 155 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCce
Confidence 666666666 45566666666777777777777665544444444455688889998999999988766554
No 126
>PHA03098 kelch-like protein; Provisional
Probab=66.92 E-value=1.8e+02 Score=35.81 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=10.8
Q ss_pred EEEEeCCcEEEeCCc
Q 001361 370 CAVTLSGDMYTWGGS 384 (1092)
Q Consensus 370 ~aLT~dG~Vy~wG~n 384 (1092)
.++..++.||..|..
T Consensus 289 ~~~~~~~~lyv~GG~ 303 (534)
T PHA03098 289 GSVVLNNVIYFIGGM 303 (534)
T ss_pred eEEEECCEEEEECCC
Confidence 344567899999954
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=66.61 E-value=1.9e+02 Score=34.66 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=15.4
Q ss_pred eEEEEeeCcEEEEEecCCcEEEE
Q 001361 530 FCQVSCGHSLTVALTTTGHVYTM 552 (1092)
Q Consensus 530 I~~Ia~G~~htlaLt~dG~Vy~w 552 (1092)
-+-+.-+..+.++=+++|.+|..
T Consensus 222 av~lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 222 AVALDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred eEEEcccccEEEecCCcceEEee
Confidence 34445566677777888888764
No 128
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=66.47 E-value=65 Score=28.63 Aligned_cols=62 Identities=27% Similarity=0.419 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
.|+.-||.....|+++.+..+.++..+.+.-..|+.-+++=-..+.--|+-+.+|..+|++.
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888999999999999999999888888777765544433333333666677777777664
No 129
>PRK11637 AmiB activator; Provisional
Probab=66.08 E-value=30 Score=41.61 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=31.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 860 DDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 860 ~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
+.|+...+++.+++.++..++++....+.+|..+.++++++-.-..+=-.+.+..++=|+.|..
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~ 110 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNA 110 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333335555555556666666666666666666665555544333333333333333333333
No 130
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=65.33 E-value=69 Score=31.45 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=32.2
Q ss_pred CCCCCeEEEEEcC-ceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 86 EKEYQSFSLIYND-RSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 86 ~~~~~~FSiiy~~-rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
.+-..-|.|...+ +..=|-|.+.+|++.||..|+...+.
T Consensus 74 ~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 74 SKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred cCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 3445678888866 88889999999999999999987653
No 131
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=64.61 E-value=87 Score=37.20 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=31.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 860 DDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 860 ~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
..+++..+|+..++.....|...+|.+..++++--+-+.++ --||.-|++--.|-+..+|.
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~---LqEEr~R~erLEeqlNd~~e 272 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEA---LQEERYRYERLEEQLNDLTE 272 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHH
Confidence 33444456666666666666666666655433322222222 22566666666666666554
No 132
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=64.45 E-value=46 Score=35.14 Aligned_cols=68 Identities=18% Similarity=0.323 Sum_probs=44.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 001361 862 AKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMA 929 (1092)
Q Consensus 862 l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~ 929 (1092)
+.+..+...+|..+...+.+++..+..++...+....+.-..-.+.-++.++.++.+|.+..++.++-
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33335555666666666666666666777666666666665555666677777777777777777665
No 133
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=64.02 E-value=12 Score=45.47 Aligned_cols=104 Identities=19% Similarity=0.276 Sum_probs=64.3
Q ss_pred HHHHhcCCeEEEEe-cCCCceeEeEEEeCCCCeEEEecCCccceEEccceeecccCCCChhhhcCCC-CCCCCCeEEEEE
Q 001361 19 ITALKKGAHLLKYG-RRGKPKFCPFRLANDESILIWISGKEEKHLKLSHVSRIIPGQRTPIFQRYPR-PEKEYQSFSLIY 96 (1092)
Q Consensus 19 l~~L~~Gt~l~K~~-~~~kp~~r~f~L~~d~~~l~W~~~k~~~~i~l~~I~eVr~G~~t~~f~~~~~-~~~~~~~FSiiy 96 (1092)
-..|++|. ++|+. ++|.+..|+++|=.| .+++...+. .+. -..-++|.-........... .......|-+-.
T Consensus 270 reLiKEG~-l~Kis~k~~~~qeRylfLFNd--~~lyc~~r~--~~~-~~k~~~r~~~s~~~~~v~~~~~~~~~~tF~~~G 343 (623)
T KOG4424|consen 270 RELIKEGQ-LQKISAKNGTTQERYLFLFND--ILLYCKPRK--RLP-GSKYEVRARCSISHMQVQEDDNEELPHTFILTG 343 (623)
T ss_pred HHHhhccc-eeeeeccCCCcceeEEEEehh--HHHhhhhhh--hcc-cceeccceeeccCcchhcccccccCCceEEEec
Confidence 45567775 56774 459999999999887 233432221 111 11222222222222222211 233356776666
Q ss_pred cCceeEEEeCCHHHHHHHHHHHHHHHHccccc
Q 001361 97 NDRSLDLICKDKDEAEVWFTGLKALISRSHYR 128 (1092)
Q Consensus 97 ~~rsLDLia~~~~e~~~Wv~gL~~Li~~~~~~ 128 (1092)
.+++|+|-|.|.++-+.||..++..|..++..
T Consensus 344 ~~r~vel~a~t~~ek~eWv~~I~~~Id~~kq~ 375 (623)
T KOG4424|consen 344 KKRGVELQARTEQEKKEWVQAIQDAIDKHKQC 375 (623)
T ss_pred ccceEEeecCchhhHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999877654
No 134
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=63.95 E-value=31 Score=32.00 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 922 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~ 922 (1092)
.+|..+|.+|.+.|+.+-...+.|+.-.+-+-+- ||..+.-....||..|-
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkn------ee~~~~~sr~~V~d~L~ 79 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKN------EENTRRLSRDSVIDQLQ 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHhhccCCHHHHHHHHH
Confidence 4556666666666666666666666555555555 78888888888887774
No 135
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=63.93 E-value=3e+02 Score=32.97 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=41.0
Q ss_pred CEEEEEe-cCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEee--ccCCCcEEEEEeCCCeEEEEEeCCcEEEeC
Q 001361 306 DVQNIAC-GGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLID--ALKNINVELVACGEHHTCAVTLSGDMYTWG 382 (1092)
Q Consensus 306 ~I~~Ia~-G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~--~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG 382 (1092)
+|+.+.- ...+.++|+++|.|+.+- ..|.. ....+..+. ...+.+|-.+..+.+-.++||.++++|.--
T Consensus 82 ~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~ 153 (410)
T PF04841_consen 82 RIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVN 153 (410)
T ss_pred CEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEe
Confidence 5555543 355778999999988873 33332 111222221 111233444566667788999999999884
No 136
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=63.80 E-value=4 Score=41.87 Aligned_cols=26 Identities=19% Similarity=0.621 Sum_probs=20.6
Q ss_pred cCHHHHHHHHHHhHhhhHhhcccccc
Q 001361 1053 FSEKQAEQWWAANRARVYQQYNVSMV 1078 (1092)
Q Consensus 1053 f~~~~a~~ww~~n~~~~~~~~~~~~~ 1078 (1092)
|++..==.||.+|+++|.++|+++--
T Consensus 51 ~Td~gKI~WW~~Nk~~l~~KY~ip~~ 76 (157)
T PF06092_consen 51 LTDSGKINWWLKNKDMLKEKYNIPEP 76 (157)
T ss_pred CCccchhhHHHHhHHHHHHhcCCCCC
Confidence 33555556999999999999999853
No 137
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=62.32 E-value=36 Score=30.38 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 910 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k 910 (1092)
++-|-+|.++|..|.-+.++++..+......++- |.+|+++
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qA----Ak~eaar 64 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQA----AKDEAAR 64 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHhHHHH
Confidence 5667888889999999999998888777666554 7788888
No 138
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=61.70 E-value=41 Score=35.86 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
+..+..++..|+.+.+.++.+++.++.+.+.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~ 152 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555544444443
No 139
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=61.57 E-value=39 Score=41.60 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH---HHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAA---KDVIKSLTAQLK 926 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~a---ke~ik~l~~qlk 926 (1092)
-.-|.+|+.|++.|+...++++.||++++.++.++-.-+..|.-|.+.. .+-|..|...|.
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4446778888888888899999999999999888877777666665443 355666666554
No 140
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=61.31 E-value=19 Score=32.05 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTT 894 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~ 894 (1092)
.+|+..|+.|++.|+++-+.++.||++++
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55666666666666666666666666653
No 141
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=61.07 E-value=4.6e+02 Score=33.58 Aligned_cols=120 Identities=9% Similarity=0.070 Sum_probs=69.1
Q ss_pred EEEEEecCce--EEEEEcCCeEEEEeCCCCCccCCCCCC-CCCcceEeeccCCCcEEEEEeCCCeEEEEE--eCCcEEEe
Q 001361 307 VQNIACGGRH--AALVTKQGEVFSWGEELGGRLGHGVDS-DVSHPKLIDALKNINVELVACGEHHTCAVT--LSGDMYTW 381 (1092)
Q Consensus 307 I~~Ia~G~~h--s~~Lt~dG~Vy~wG~N~~GqLG~g~~~-~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT--~dG~Vy~w 381 (1092)
|.+++.|..- ++.+...|.-.++|...-|||+.=.=. ..+..++--.+ ..|..++-...-.++.| +||+|-.|
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcEEEE
Confidence 4555555433 455666788888888888887643211 11111111111 24555555555444443 68888888
Q ss_pred CCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCC
Q 001361 382 GGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTF 441 (1092)
Q Consensus 382 G~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~ 441 (1092)
-... -+..........++..++++.-.+..+-..-||.|-.|-...|
T Consensus 378 n~~S-------------gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 378 NTQS-------------GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred eccC-------------ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 6441 1112222333446677788887777788888999999976554
No 142
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=60.18 E-value=2.7 Score=47.38 Aligned_cols=65 Identities=22% Similarity=0.472 Sum_probs=49.0
Q ss_pred ccccccccccCCCCCcCCcccccccccccccceEEeccCCC----cccccccCCCCCCCeeeCccchhh
Q 001361 651 KWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSK----KSVKASMAPNPNKPYRVCDNCFGK 715 (1092)
Q Consensus 651 kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~----~~~~~~~~~~~~k~~RVC~~C~~~ 715 (1092)
.|..+.+...|..|...|.|..++|+|+.||+++|..|... +.+.+......+...+.|..|+..
T Consensus 13 ~~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 13 DWQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHHhccchhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence 57888888899999999999999999999999999999772 223333333344556667777665
No 143
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=60.07 E-value=44 Score=37.36 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 882 KSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 882 ~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
+.+..+.|.+...++++.+-.-..++-++.+.+..-+|-+..++.+|++||-.
T Consensus 187 ~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~ 239 (269)
T PF05278_consen 187 QHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGE 239 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778888888888777777777777888888888999999999998754
No 144
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.88 E-value=1.4e+02 Score=40.14 Aligned_cols=217 Identities=17% Similarity=0.140 Sum_probs=110.0
Q ss_pred EEEEcCCeEEEEeCCCCCccCCCCCC--CCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCccCCCCccCCCC
Q 001361 318 ALVTKQGEVFSWGEELGGRLGHGVDS--DVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGN 395 (1092)
Q Consensus 318 ~~Lt~dG~Vy~wG~N~~GqLG~g~~~--~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~ 395 (1092)
+-+|-|+++|.|-.++.+++-.-++. .+..-.++..-.++-+-.| .|.++|..--+|+..|-.. .....+...
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~-~~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSF-DEFTGELSI 167 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEe-ccccCcccc
Confidence 45889999999999887765322211 1111122222223222222 5889999999999888542 112222221
Q ss_pred CcceecceeecCCCCCCcEEEEEeCCCeEEEEE-cCCcEEEe----ecCCCcccCC-----CCCcccccceeeec--CCC
Q 001361 396 EMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVT-SAGQLFTF----GDGTFGVLGH-----GDRISVSTPREVDS--LKG 463 (1092)
Q Consensus 396 ~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt-~dG~Vy~w----G~N~~GQLG~-----g~~~~~~~P~~V~~--l~~ 463 (1092)
.... +..+.+|..|..|.+-.+-=++++ .+|.||-. +++-|+.-.+ ........|..+.. ...
T Consensus 168 f~~~-----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 168 FNTS-----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred cccc-----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 1111 222345667777776555555554 66665533 3444554111 11122334542222 224
Q ss_pred CeEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCC---------cceeeEEecccCCCCeEEEE
Q 001361 464 LRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKE---------ARLVPTCVAALVEPNFCQVS 534 (1092)
Q Consensus 464 ~~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~---------~~~~P~~V~~l~~~~I~~Ia 534 (1092)
..|.+++-+....+..+- ...|.|-+|--+..|+-+.-... ....-..+....-..|++|+
T Consensus 243 dpI~qi~ID~SR~IlY~l----------sek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~ 312 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVL----------SEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSIS 312 (1311)
T ss_pred CcceeeEeccccceeeee----------ccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEec
Confidence 478888888887777652 24677766655544443321100 00000001111113455553
Q ss_pred ------eeCcEEEEEecCC-cEEEEeC
Q 001361 535 ------CGHSLTVALTTTG-HVYTMGS 554 (1092)
Q Consensus 535 ------~G~~htlaLt~dG-~Vy~wG~ 554 (1092)
.-.-|.+|+|..| ++|.-|+
T Consensus 313 ~l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 313 PLSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred ccCcccccceeEEEEecCCeEEEEecc
Confidence 2355889999998 5776654
No 145
>PRK09039 hypothetical protein; Validated
Probab=59.75 E-value=51 Score=38.52 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAV 903 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~ 903 (1092)
.-+|..|++|+++|+.|+..++.+|..++++.+++-..
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~ 173 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK 173 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788899999999999888888888888877664433
No 146
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=59.58 E-value=53 Score=40.36 Aligned_cols=34 Identities=41% Similarity=0.513 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
.+|+.+|+.+|..|...++....+.+.++++.++
T Consensus 163 e~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~ke 196 (546)
T PF07888_consen 163 EEEVEQLREEVERLEAELEQEEEEMEQLKQQQKE 196 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555544443
No 147
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=59.54 E-value=51 Score=37.08 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
.+++.+++.+++.++++++.+..+|+..++.++
T Consensus 76 ~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 76 RERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666665555555555444
No 148
>PRK10869 recombination and repair protein; Provisional
Probab=59.46 E-value=33 Score=42.71 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 001361 910 KCRAAKDVIKSLTAQLKDMA 929 (1092)
Q Consensus 910 k~~~ake~ik~l~~qlk~~~ 929 (1092)
+.++|+++-+.++.+|++|.
T Consensus 368 R~~aA~~l~~~v~~~L~~L~ 387 (553)
T PRK10869 368 RQRYAKELAQLITESMHELS 387 (553)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 45789999999999999985
No 149
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=58.82 E-value=51 Score=32.80 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=26.4
Q ss_pred CCCeEEEEE-----cC-ceeEEEeCCHHHHHHHHHHHH
Q 001361 88 EYQSFSLIY-----ND-RSLDLICKDKDEAEVWFTGLK 119 (1092)
Q Consensus 88 ~~~~FSiiy-----~~-rsLDLia~~~~e~~~Wv~gL~ 119 (1092)
....|.|.. |. +.|-|-|+++.|...|+.+|.
T Consensus 82 ~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 82 RPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 457898886 22 679999999999999999874
No 150
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.87 E-value=1.4e+02 Score=34.36 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=36.9
Q ss_pred chhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 857 IVVDDAKRT-SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 857 ~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
.+.+.++.+ -+||.+++++.++|+|..|.+..-+++++..++ --.-|..+.++.-||+|+=..
T Consensus 214 a~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~e----tLEqq~~~L~~niDIL~~k~~ 277 (365)
T KOG2391|consen 214 AVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKE----TLEQQLQSLQKNIDILKSKVR 277 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHH
Confidence 344666666 889999999999999887765543333322221 122344455555555554443
No 151
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=57.86 E-value=58 Score=36.13 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=36.9
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH---HHHhhCCCcc
Q 001361 866 SEEVIKLRA--QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLK---DMAEMLPVGA 936 (1092)
Q Consensus 866 ~qev~~l~~--qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk---~~~e~lp~~~ 936 (1092)
.+|++.||. |-.+|+.-+...+.++.....++++.=.....|.....-+||.+.++-.|++ .|.+.+|+..
T Consensus 5 ~~~~~~~r~~~~~~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l~hl~~nvP~~l 80 (243)
T PF07160_consen 5 LKELLSLRNMGQDPNLKDTLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKLQHLKENVPPHL 80 (243)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 345555555 4444555455555555555555555444444444556668888888877655 5677888764
No 152
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=57.78 E-value=4.3e+02 Score=32.25 Aligned_cols=87 Identities=17% Similarity=0.257 Sum_probs=47.7
Q ss_pred EEEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEE-EEEeCCcEEEeCCccCC
Q 001361 309 NIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTC-AVTLSGDMYTWGGSNCN 387 (1092)
Q Consensus 309 ~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~-aLT~dG~Vy~wG~n~~~ 387 (1092)
=|.||..|.+|.+..|..+.=-..- ++..+...|..|..+++--+ -=+.+|.++.|+.+.+
T Consensus 216 iit~Gk~H~~Fw~~~~~~l~k~~~~-----------------fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~- 277 (626)
T KOG2106|consen 216 IITCGKGHLYFWTLRGGSLVKRQGI-----------------FEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTN- 277 (626)
T ss_pred EEEeCCceEEEEEccCCceEEEeec-----------------cccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCc-
Confidence 4789999999888777554321111 11111123445555444332 2345688999986511
Q ss_pred CCccCCCCCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEE
Q 001361 388 FGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFT 435 (1092)
Q Consensus 388 ~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~ 435 (1092)
++. ..+. +.-|.-+++++..+|.|.+
T Consensus 278 ----------------~~~-----k~~~-aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 278 ----------------RIS-----KQVH-AHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred ----------------eEE-----eEee-ecCCceEEEEEecCccEee
Confidence 010 0122 4446667777778887776
No 153
>PRK02119 hypothetical protein; Provisional
Probab=57.75 E-value=45 Score=29.95 Aligned_cols=33 Identities=30% Similarity=0.293 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
+|+..+.+.+..|+.+.-.|+.-|+.+.+-|-+
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~ 34 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEELNQALIE 34 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777777777777776655544
No 154
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=57.65 E-value=52 Score=35.83 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 910 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k 910 (1092)
.+.+.+..++-..|+++.+..+.++++..++++-|+.--.|+.||
T Consensus 44 r~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr 88 (219)
T TIGR02977 44 RTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLAR 88 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 445555555777899999999999999999999998765555554
No 155
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=57.47 E-value=72 Score=31.28 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=54.0
Q ss_pred hcCCeEEEEecCCCceeEeEEEeCCCCeEEEecCCc---------cceEEccceeecccCCCChhhhcCCCCCCCCCeEE
Q 001361 23 KKGAHLLKYGRRGKPKFCPFRLANDESILIWISGKE---------EKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFS 93 (1092)
Q Consensus 23 ~~Gt~l~K~~~~~kp~~r~f~L~~d~~~l~W~~~k~---------~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FS 93 (1092)
..|..=+|---+++|+.|+.+|=.- .-|+...... +..+.|.++. |......+. ......-..+|-
T Consensus 6 ~DGelk~k~~~~~k~k~RyiFLFDk-~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~-I~~~~~~d~---~~~~~~~~~~f~ 80 (116)
T cd01223 6 LDGEVRIKASEDQKTKLRYIFLFDK-AVIVCKALGDNTGDMQYTYKDIHDLADYK-IENNPSRDT---EGRDTRWKYGFY 80 (116)
T ss_pred cCCceEEeEeccCCCceeEEEEecc-eEEEEEecCCCCCCccEEhHHhhhhheee-eEecCccCc---ccCCcceEEEEE
Confidence 4455434444457899999998654 4444443211 1112222210 111110000 000111235788
Q ss_pred EEEcC--ceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 94 LIYND--RSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 94 iiy~~--rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
|+..+ ..+.|.|+++++.+.|...|..-++.
T Consensus 81 L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 81 LAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred EEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 99866 67999999999999999998876653
No 156
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=57.08 E-value=59 Score=39.04 Aligned_cols=77 Identities=21% Similarity=0.225 Sum_probs=51.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 859 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQ----LKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 859 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~----~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
.|.+-+.-+|-.+++.|++.|+.+--....+|...+++ .++..+-+++=.++.++.++-++.|.++|.++..+||-
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN 108 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPN 108 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34444446666777777777777777777777664433 23333334444567778888899999999999888875
Q ss_pred c
Q 001361 935 G 935 (1092)
Q Consensus 935 ~ 935 (1092)
=
T Consensus 109 ~ 109 (418)
T TIGR00414 109 I 109 (418)
T ss_pred C
Confidence 4
No 157
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=56.40 E-value=44 Score=40.47 Aligned_cols=67 Identities=24% Similarity=0.312 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK------EALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~------ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
.+++.+|+.|++.|+.+++.++..|+++++.-. +.......=..+.+..++.++.|..+|++|.+.|
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777766221 1111111111222335555666666666665544
No 158
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=56.34 E-value=3.2e+02 Score=32.03 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=13.6
Q ss_pred CeEEEEEeCCcEEEeCCc
Q 001361 367 HHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 367 ~hs~aLT~dG~Vy~wG~n 384 (1092)
.|++++..+|+||.+|..
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466555478999999965
No 159
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=56.33 E-value=44 Score=41.02 Aligned_cols=63 Identities=30% Similarity=0.371 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
..|+.+|+.|+..|+.+.+..+.++.....++.+......+==|+..-+|-=||.|..+++.+
T Consensus 112 e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 112 EIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999877776665566667777777777765554
No 160
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=56.33 E-value=66 Score=40.33 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 864 RTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAG 905 (1092)
Q Consensus 864 ~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ 905 (1092)
+..+|+..|+.|+..|..+++..+.++..++.++++...-..
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE 366 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 339999999999999999999999999999988887544333
No 161
>PRK14153 heat shock protein GrpE; Provisional
Probab=54.87 E-value=64 Score=34.53 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=42.2
Q ss_pred hhhhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 858 VVDDAKRT------SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 858 ~~~~l~~~------~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
..++||+. .+|+.+|++|+..|+.+.-.+.+|++-++|..+.-..-+.+-+. -+.++++|-.+.+
T Consensus 25 ~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~-~~~~~~LLpv~Dn 95 (194)
T PRK14153 25 EAEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVL-EQVLLDLLEVTDN 95 (194)
T ss_pred HHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 34556654 67778888888888888888888888888877754443333322 2455555554443
No 162
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=54.85 E-value=1.1e+02 Score=38.49 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=16.7
Q ss_pred EEeeCcEEEEEecCCcEEEEeC
Q 001361 533 VSCGHSLTVALTTTGHVYTMGS 554 (1092)
Q Consensus 533 Ia~G~~htlaLt~dG~Vy~wG~ 554 (1092)
...+..+.-+..-+|.+|+.|.
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CccccccccEEEECCEEEEEec
Confidence 3446667777778899999985
No 163
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=54.43 E-value=79 Score=34.11 Aligned_cols=26 Identities=19% Similarity=-0.102 Sum_probs=22.0
Q ss_pred eeccceEEEEEEcCCCccceeEEEee
Q 001361 1024 QDETGVYITLVALPGGLKDLKRVRFS 1049 (1092)
Q Consensus 1024 ~~epgv~~t~~~~~~g~~~~~rv~f~ 1049 (1092)
-.||-+||+...-+-+.-.|+-++.+
T Consensus 229 die~~~~~~~~~e~e~~i~lg~~~ia 254 (290)
T COG4026 229 DIEGQGYIYAEDEKEVEILLGTVYIA 254 (290)
T ss_pred hccceeeeecccccccceeeeeeeee
Confidence 35677999999999999999999887
No 164
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.05 E-value=34 Score=36.91 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL---AVAGEETAKC 911 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~---~~a~ee~~k~ 911 (1092)
.||+..+|++.+.|+.+.+.+..|...++.-+.++- +-|.|++.|.
T Consensus 92 eqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kR 140 (246)
T KOG4657|consen 92 EQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKR 140 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888888888887776665543 4555666554
No 165
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=53.90 E-value=54 Score=40.50 Aligned_cols=60 Identities=27% Similarity=0.384 Sum_probs=39.2
Q ss_pred HHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRA----QV---EELTRKSQLQEIELERTTRQLKEALAVAGEE--TAKCRAAKDVIKSLTAQLKDMA 929 (1092)
Q Consensus 866 ~qev~~l~~----qv---~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee--~~k~~~ake~ik~l~~qlk~~~ 929 (1092)
..|+..++. |. ++-...++.++.+++++++++.++ +++ ..++++|+++=|.++++||+++
T Consensus 320 ~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~----A~~Ls~~R~~~A~~L~~~v~~eL~~L~ 388 (557)
T COG0497 320 IEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEA----AEALSAIRKKAAKELEKEVTAELKALA 388 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455554444 33 333445666666666666665553 333 3568899999999999999985
No 166
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=53.80 E-value=60 Score=35.61 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
-+.+.++.+....|.++.+.+....+++..+.+.|+...-|+-|+ .|-+-+++|..
T Consensus 44 r~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr--~al~~~~~le~ 99 (225)
T COG1842 44 RQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAR--EALEEKQSLED 99 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHH
Confidence 555555666778999999999999999999999999877777665 34445555554
No 167
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=53.69 E-value=75 Score=38.29 Aligned_cols=78 Identities=22% Similarity=0.292 Sum_probs=52.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCc
Q 001361 859 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQ---LKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVG 935 (1092)
Q Consensus 859 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~---~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~ 935 (1092)
+|.+-+.-+|..+|+.|+++|+.+......+|.+.+++ +++...-+.+=.++.+..++-++.+.+++.++.-+||-=
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 55555556777777777777777777777777653322 223333344444566778889999999999999888854
Q ss_pred c
Q 001361 936 A 936 (1092)
Q Consensus 936 ~ 936 (1092)
.
T Consensus 107 ~ 107 (425)
T PRK05431 107 P 107 (425)
T ss_pred C
Confidence 3
No 168
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=53.54 E-value=71 Score=33.69 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHh
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 930 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e 930 (1092)
.|+..++.+...|.++.++.+..++.....+++--..-.+.-.-.+..++-++++....++|.+
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 144 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEK 144 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433332222122222223344444444444444443
No 169
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=53.43 E-value=81 Score=36.40 Aligned_cols=40 Identities=25% Similarity=0.401 Sum_probs=25.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 860 DDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 860 ~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
+++++..+|...|..+++.|++++++++.||..++.+.++
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445666666667777777777777777666655543
No 170
>PLN02153 epithiospecifier protein
Probab=53.39 E-value=4e+02 Score=30.63 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=12.4
Q ss_pred CeEEEEEeCCcEEEeCCc
Q 001361 367 HHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 367 ~hs~aLT~dG~Vy~wG~n 384 (1092)
.|++++ .+++||.+|..
T Consensus 130 ~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeEEEE-ECCEEEEECCc
Confidence 566554 57899999965
No 171
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.34 E-value=34 Score=39.12 Aligned_cols=45 Identities=33% Similarity=0.378 Sum_probs=34.2
Q ss_pred hhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 860 DDAKRTSEEV----IKLRAQVEELTRKSQLQEIELERTTRQLKEALAVA 904 (1092)
Q Consensus 860 ~~l~~~~qev----~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a 904 (1092)
.+||++.||+ .+|+++++.|+|+...++..++-+++|++||..-|
T Consensus 235 ~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~ 283 (365)
T KOG2391|consen 235 ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKA 283 (365)
T ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 4455554444 67788889999999999999999999999955444
No 172
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=53.28 E-value=58 Score=34.67 Aligned_cols=72 Identities=21% Similarity=0.256 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCcc
Q 001361 864 RTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVGA 936 (1092)
Q Consensus 864 ~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~~ 936 (1092)
...+++.+|+++++.++.+.+.++.+|+..+....+.-.... -.++.+..++-++.|..+|+...+--|...
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~-~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i 137 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREE-LLEELEELKKELKELKKELEKYSENDPEKI 137 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 337788889999999999999999999998777666533332 345567778888888888887776666543
No 173
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=53.23 E-value=1.1e+02 Score=32.62 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALA 902 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~ 902 (1092)
.+++..|..+.+.|+.+...+..+++..+++.++...
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~ 162 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888888888777776543
No 174
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=52.91 E-value=2.3e+02 Score=32.71 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=11.5
Q ss_pred EEEEecCCcEEEEeC
Q 001361 540 TVALTTTGHVYTMGS 554 (1092)
Q Consensus 540 tlaLt~dG~Vy~wG~ 554 (1092)
..+..-+|+||++|-
T Consensus 315 ~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 315 GVSVSWNNGVLLIGG 329 (346)
T ss_pred eEEEEcCCEEEEEec
Confidence 345667899999994
No 175
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=52.16 E-value=40 Score=29.42 Aligned_cols=57 Identities=23% Similarity=0.383 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 872 LRAQVEELTRKSQLQEIELERTTRQLKEA-------LAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 872 l~~qv~~L~~~~~~~~~ei~~~~~~~~ea-------~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
+.+++..|..+.+.++.+|+++.+++..- -.+..+|-+|....++-|..|..+|+.|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677788888888888888888888632 1245567777777777888887777766
No 176
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=51.78 E-value=64 Score=33.92 Aligned_cols=62 Identities=11% Similarity=0.200 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----h-hhHHHHHHHHHHHHHHHHhhCCCcc
Q 001361 875 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK----C-RAAKDVIKSLTAQLKDMAEMLPVGA 936 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k----~-~~ake~ik~l~~qlk~~~e~lp~~~ 936 (1092)
+...|+...+.+..||+++++++++-+.-...|..- . -..+|..+.+..+++++-.|+-.+.
T Consensus 74 ~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei 140 (177)
T PF07798_consen 74 EFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEI 140 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888888888888887744433332210 0 1266777777777887777765543
No 177
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=51.64 E-value=11 Score=43.23 Aligned_cols=75 Identities=21% Similarity=0.346 Sum_probs=43.2
Q ss_pred EecCCcceeeeeeccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCC-CCCCeeeCccchhhh
Q 001361 638 VCGTSFTAAICLHKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPN-PNKPYRVCDNCFGKL 716 (1092)
Q Consensus 638 acG~~~T~al~~~kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~-~~k~~RVC~~C~~~l 716 (1092)
.||+...+.+....-..|.-.-.|+.|...+.+ +|..|.+||. +.+..+..+... ..-..-+|+.|..-+
T Consensus 192 vCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~--~R~~C~~Cg~-------~~~l~y~~~~~~~~~~r~e~C~~C~~Yl 262 (309)
T PRK03564 192 VCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV--VRVKCSNCEQ-------SGKLHYWSLDSEQAAVKAESCGDCGTYL 262 (309)
T ss_pred CCCCcchhheeeccCCCCceEEEcCCCCCcccc--cCccCCCCCC-------CCceeeeeecCCCcceEeeecccccccc
Confidence 477776555432211345566779999876555 4677888884 233333333221 112345899998877
Q ss_pred hcccC
Q 001361 717 TKATE 721 (1092)
Q Consensus 717 ~~~~~ 721 (1092)
+....
T Consensus 263 K~~~~ 267 (309)
T PRK03564 263 KILYQ 267 (309)
T ss_pred eeccc
Confidence 76533
No 178
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=51.33 E-value=84 Score=31.98 Aligned_cols=56 Identities=27% Similarity=0.293 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHh
Q 001361 875 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 930 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e 930 (1092)
++..|....+.+...+++++.+++++-.-++---++.++++.-++.+...+|...|
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ke 115 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKE 115 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666666666665555555556677777777777777665544
No 179
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=51.28 E-value=62 Score=41.16 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
.+++.+++++...+.++++.+..+|++++++++.
T Consensus 434 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 434 QNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666666666666666666644
No 180
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=51.04 E-value=1.6e+02 Score=33.01 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 870 IKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 870 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
-.||+.+..-..+++.+|.||+.++.||-
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~ 99 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLA 99 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45666777777777778888888888763
No 181
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=50.72 E-value=81 Score=33.27 Aligned_cols=59 Identities=22% Similarity=0.430 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCcc
Q 001361 871 KLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVGA 936 (1092)
Q Consensus 871 ~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~~ 936 (1092)
++|+.|..|+++..+....||-..+ --..--+ .|--|+|=|.-+...+.-+||.+|++.
T Consensus 24 ~iravV~~ie~~~r~iq~~L~~vhq----~~~~i~k---~~~~are~~~~~kq~~~~LaE~~~~~q 82 (226)
T KOG3067|consen 24 KIRAVVDEIEEKLREIQLLLQNVHQ----NENLIPK---ECGLAREDLENIKQKYRMLAELPPAGQ 82 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc----ccccchH---HHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 4455555555555555555544443 1112222 355577777777788899999999997
No 182
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=50.45 E-value=12 Score=42.86 Aligned_cols=75 Identities=24% Similarity=0.478 Sum_probs=42.0
Q ss_pred EecCCcceeeeee-ccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCC-CCCCee--eCccch
Q 001361 638 VCGTSFTAAICLH-KWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPN-PNKPYR--VCDNCF 713 (1092)
Q Consensus 638 acG~~~T~al~~~-kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~-~~k~~R--VC~~C~ 713 (1092)
.||+...+.+... .-..|.-.-.|+.|...+.+ .|..|.+||. +.+..+..+..+ ....+| +|+.|.
T Consensus 189 vCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~--~R~~C~~Cg~-------~~~l~y~~~e~~~~~~~~r~e~C~~C~ 259 (305)
T TIGR01562 189 ACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY--VRVKCSHCEE-------SKHLAYLSLEHDAEKAVLKAETCDSCQ 259 (305)
T ss_pred CCCChhhhhhhcccCCCCCceEEEcCCCCCcccc--cCccCCCCCC-------CCceeeEeecCCCCCcceEEeeccccc
Confidence 4666665543321 11344555678888875555 4677888874 233333333221 123456 999998
Q ss_pred hhhhcccC
Q 001361 714 GKLTKATE 721 (1092)
Q Consensus 714 ~~l~~~~~ 721 (1092)
.-++....
T Consensus 260 ~YlK~~~~ 267 (305)
T TIGR01562 260 GYLKILYQ 267 (305)
T ss_pred cchhhhcc
Confidence 87776543
No 183
>PHA02047 phage lambda Rz1-like protein
Probab=50.13 E-value=95 Score=29.20 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 873 RAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 873 ~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
+.+.++|+.++|..+..|..+++++++
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~ 59 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQA 59 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777777788888777776
No 184
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=49.83 E-value=98 Score=30.65 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=15.3
Q ss_pred EEeCCHHHHHHHHHHHH
Q 001361 103 LICKDKDEAEVWFTGLK 119 (1092)
Q Consensus 103 Lia~~~~e~~~Wv~gL~ 119 (1092)
|-|++++|++.|+..|+
T Consensus 104 lsaDt~eer~~W~~ain 120 (122)
T cd01263 104 LSADTKEERQTWLSLLN 120 (122)
T ss_pred EecCCHHHHHHHHHHHh
Confidence 56999999999999986
No 185
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=49.65 E-value=1e+02 Score=32.36 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGE 906 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~e 906 (1092)
.-+-.+|+.++..|..+.|+.+.||.++++++..++-+-+-
T Consensus 41 ~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h 81 (177)
T PF13870_consen 41 LIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTH 81 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777888888888888888888777655544433
No 186
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.46 E-value=1.8e+02 Score=39.20 Aligned_cols=160 Identities=18% Similarity=0.161 Sum_probs=81.5
Q ss_pred EEEEEcCCcEEEeecCCCcccCCCCCc--ccccceeeecCCCCeEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEec
Q 001361 424 TAVVTSAGQLFTFGDGTFGVLGHGDRI--SVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWG 501 (1092)
Q Consensus 424 t~aLt~dG~Vy~wG~N~~GQLG~g~~~--~~~~P~~V~~l~~~~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG 501 (1092)
-+-+|.|++||-|-.+..+++-.-+.. .+..-..|..-.|.-+.. ..|-++|. ..-+|+..|
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~----IqhlLvva------------T~~ei~ilg 155 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE----IQHLLVVA------------TPVEIVILG 155 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh----hheeEEec------------ccceEEEEE
Confidence 356899999999998876665432221 111111222222222222 24666664 466777776
Q ss_pred CCCC-CCcCCCCCCcceeeEEecccCCCCeEEEEe-eCcEEEEE-ecCCcEEEEeCCCC-----CCCCCCC---------
Q 001361 502 DGDR-GRLGHGDKEARLVPTCVAALVEPNFCQVSC-GHSLTVAL-TTTGHVYTMGSPVY-----GQLGDPK--------- 564 (1092)
Q Consensus 502 ~n~~-GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~-G~~htlaL-t~dG~Vy~wG~N~~-----GQLG~~~--------- 564 (1092)
-... +..+.+.... ..+|+. |-+-..+. |++|+||.-|.+.+ .|.+.+-
T Consensus 156 V~~~~~~~~~~~f~~--------------~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kic 221 (1311)
T KOG1900|consen 156 VSFDEFTGELSIFNT--------------SFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKIC 221 (1311)
T ss_pred EEeccccCccccccc--------------ceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhccccccc
Confidence 3221 1111111100 122333 33333333 67777777776542 1222111
Q ss_pred -----CCCccceeeccc-cCCCCEEEEEEcCCEE--EEEEcCCeEEEEeCCCCCCCC
Q 001361 565 -----ANGKLPTRVEGK-LTKNFVEEIACGDYHV--AVLTSRTEVYTWGKGANGRLG 613 (1092)
Q Consensus 565 -----~~~~~P~~v~~~-l~~~~I~~Ia~G~~Hs--laLT~dG~Vy~WG~n~~GQLG 613 (1092)
.....|...... ...+.|.+|+.+.... +++++.|.|-+|=-+.+|.-|
T Consensus 222 lt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 222 LTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred CchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence 111245533322 2356799999998775 556788998888777777655
No 187
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=49.46 E-value=1.8e+02 Score=32.25 Aligned_cols=91 Identities=20% Similarity=0.293 Sum_probs=48.0
Q ss_pred CcceEeeccCCCcEEE-EEeCCCeEEEE-EeCCcEEEeCCccCCCCccCCCCC-cceecceeecCCCCCCcEEEEEeC-C
Q 001361 346 SHPKLIDALKNINVEL-VACGEHHTCAV-TLSGDMYTWGGSNCNFGLLGHGNE-MSLWLPKKLNGPLEGIHVSSVSCG-P 421 (1092)
Q Consensus 346 ~~P~~V~~l~~~~I~~-Ia~G~~hs~aL-T~dG~Vy~wG~n~~~~GqLG~g~~-~~~~~P~~v~~~l~~~~I~~IscG-~ 421 (1092)
..|+.+..-.+ .|+. +-|-..|+++- ++++.|-.|-..+ +.. .....+. +|.++-.. .
T Consensus 134 App~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT--------gt~v~sL~~~s---------~VtSlEvs~d 195 (334)
T KOG0278|consen 134 APPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHRT--------GTEVQSLEFNS---------PVTSLEVSQD 195 (334)
T ss_pred CCchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEecc--------CcEEEEEecCC---------CCcceeeccC
Confidence 44555554333 3444 56888888776 7789999996441 111 1111222 23332222 2
Q ss_pred CeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeee
Q 001361 422 WHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVD 459 (1092)
Q Consensus 422 ~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~ 459 (1092)
.+.+.+...+.|--|-.+.|+.| ..+..|..|.
T Consensus 196 G~ilTia~gssV~Fwdaksf~~l-----Ks~k~P~nV~ 228 (334)
T KOG0278|consen 196 GRILTIAYGSSVKFWDAKSFGLL-----KSYKMPCNVE 228 (334)
T ss_pred CCEEEEecCceeEEeccccccce-----eeccCccccc
Confidence 24444444556777877777765 3444555554
No 188
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=49.29 E-value=1.6e+02 Score=39.37 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCc
Q 001361 888 IELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVG 935 (1092)
Q Consensus 888 ~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~ 935 (1092)
.++..++.+.+|+...+.+|-++.+.++.-++.|..+|+++.++.-..
T Consensus 487 ~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 487 EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446788999999999999999999999999999999886555443
No 189
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=49.20 E-value=18 Score=25.07 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQ 884 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~ 884 (1092)
+||.+||..|+.|++++.
T Consensus 1 ~E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLS 18 (23)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 478888888888877754
No 190
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=49.18 E-value=1.2e+02 Score=34.21 Aligned_cols=134 Identities=18% Similarity=0.156 Sum_probs=76.4
Q ss_pred ccCCCCcEEEEcCCCCCcccCCCCCcCCccccccccccceEEecccCCCCEEEEEec---CceEEEEEcCCeEEEEeCC-
Q 001361 257 DGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACG---GRHAALVTKQGEVFSWGEE- 332 (1092)
Q Consensus 257 ~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G---~~hs~~Lt~dG~Vy~wG~N- 332 (1092)
+-+.+|.||.=+... |.+|+=+.. .-.++.+..| .-|.+++..||..|.+-..
T Consensus 68 apapdG~VWft~qg~--gaiGhLdP~---------------------tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~ 124 (353)
T COG4257 68 APAPDGAVWFTAQGT--GAIGHLDPA---------------------TGEVETYPLGSGASPHGIVVGPDGSAWITDTGL 124 (353)
T ss_pred ccCCCCceEEecCcc--ccceecCCC---------------------CCceEEEecCCCCCCceEEECCCCCeeEecCcc
Confidence 568899999887765 666654421 1134445444 3478888899998887543
Q ss_pred CCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCccCCCCccCCCCCcceecceeecCCCCCC
Q 001361 333 LGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGI 412 (1092)
Q Consensus 333 ~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~ 412 (1092)
.-++++........-|.. .+.+-++-.+.+++..|.||.-|.+- .+|.|.-........|...
T Consensus 125 aI~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~~~i~vfpaPq------- 187 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPARNVISVFPAPQ------- 187 (353)
T ss_pred eeEEecCcccceEEeecc---------cccCCCcccceeeCCCccEEEeeccc-cceecCcccCceeeeccCC-------
Confidence 233333221111111111 23444566788999999999988762 3454433322222222221
Q ss_pred cEEEEEeCCCeEEEEEcCCcEEEe
Q 001361 413 HVSSVSCGPWHTAVVTSAGQLFTF 436 (1092)
Q Consensus 413 ~I~~IscG~~Ht~aLt~dG~Vy~w 436 (1092)
-+.-.-+++|-+|.||.-
T Consensus 188 ------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 188 ------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred ------CCCCcceEECCCCcEEEE
Confidence 122356788999999875
No 191
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.11 E-value=66 Score=33.16 Aligned_cols=50 Identities=28% Similarity=0.340 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 001361 878 ELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKD 927 (1092)
Q Consensus 878 ~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~ 927 (1092)
.|.+|...-..|.++.++.++|...---.+|.|.|.|-++|-+|...+|.
T Consensus 122 el~eK~~~~~~Everi~~~ieE~v~eLe~~a~~lke~~~~i~~l~~~ik~ 171 (181)
T COG4345 122 ELEEKLADAMEEVERIEKTIEELVSELESLANKLKEVTDVINSLVERIKQ 171 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45556666666666677777776666667777888889999998887763
No 192
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=49.04 E-value=1e+02 Score=32.75 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhhHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEE----TAKCRAAKDVIKSLTAQLKDMA 929 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee----~~k~~~ake~ik~l~~qlk~~~ 929 (1092)
-+|-..++.++..|+-+-+.++.+|...++|++-+--.-.|| -.|.|..-+++|--..|||.--
T Consensus 184 e~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKaQL 251 (259)
T KOG4001|consen 184 ENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKAQL 251 (259)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777888888888888888888888877554444443 3577777778887777888643
No 193
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.91 E-value=1.4e+02 Score=33.14 Aligned_cols=19 Identities=16% Similarity=-0.003 Sum_probs=7.4
Q ss_pred eeeeccceEEEEEEcCCCc
Q 001361 1022 VEQDETGVYITLVALPGGL 1040 (1092)
Q Consensus 1022 ~~~~epgv~~t~~~~~~g~ 1040 (1092)
|+..-=|-.--+-..+||.
T Consensus 184 V~~LrlGr~~l~~~t~Dg~ 202 (251)
T PF11932_consen 184 VDFLRLGRVALYYQTLDGS 202 (251)
T ss_pred EEEEeecchhheeECCCcc
Confidence 3333333333333444443
No 194
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=48.84 E-value=60 Score=34.60 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
..++..|++++..|+.++..++.+|+...+-++
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e 147 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANE 147 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777777777766555544
No 195
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=48.67 E-value=1e+02 Score=35.12 Aligned_cols=62 Identities=26% Similarity=0.313 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 930 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e 930 (1092)
.+|+..++.++.+|..+.+.+..+...+.+++.+.-.--..|..+ -...|..|..+|.+|-.
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~---~~~~i~~le~el~~l~~ 276 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREE---YQAEIAELEEELAELRE 276 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHH---HHHhhhccchhHHHHHH
Confidence 566666666666666666666666666666776666555555555 34456666666555543
No 196
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=48.63 E-value=1.5e+02 Score=29.03 Aligned_cols=59 Identities=24% Similarity=0.229 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHh
Q 001361 872 LRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 930 (1092)
Q Consensus 872 l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e 930 (1092)
|+..-..|......-+.-|.....+...|...|.+|......-..-|+-|+++|..|-.
T Consensus 37 L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~ 95 (126)
T PF13863_consen 37 LEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKS 95 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555566666677777789999999999988888899999998887753
No 197
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=48.51 E-value=74 Score=40.90 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 875 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
.|..|+++.++|-.||+.++.++++.-..|..=++|.+.|+|.=+.|..+++.|..++
T Consensus 566 rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 566 RVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999888877777777799999999999999888775444
No 198
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=48.24 E-value=60 Score=31.92 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=13.8
Q ss_pred HHHhhhhhhhHHHHHHHHHHHH
Q 001361 904 AGEETAKCRAAKDVIKSLTAQL 925 (1092)
Q Consensus 904 a~ee~~k~~~ake~ik~l~~ql 925 (1092)
..++..||.-+||+++.|..|=
T Consensus 50 isdkIdkCeC~Kelle~Lk~q~ 71 (121)
T PF03310_consen 50 ISDKIDKCECNKELLEALKKQP 71 (121)
T ss_dssp HHHHHHT-TTHHHHHHHHT---
T ss_pred HHHHHHhchhhHHHHHHHhcCC
Confidence 4577778888888888877754
No 199
>PRK14161 heat shock protein GrpE; Provisional
Probab=48.21 E-value=95 Score=32.83 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
.+|+.+|+.|+..|+.+.-...+|++-++|+.+.-..-+.+-+. -+.+++++-.+.+
T Consensus 25 ~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~-~~~~~~LLpv~Dn 81 (178)
T PRK14161 25 NPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAI-ATFAKELLNVSDN 81 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 77888888888888888888888888888887765544443332 3445555544443
No 200
>smart00030 CLb CLUSTERIN Beta chain.
Probab=48.13 E-value=74 Score=33.93 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 001361 876 VEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVI 918 (1092)
Q Consensus 876 v~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~i 918 (1092)
++.-.++-..+-.-|++++++-+||+.+|.|=-.|.+++.+|-
T Consensus 38 mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vC 80 (206)
T smart00030 38 IEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVC 80 (206)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444556789999999999999999888888888765
No 201
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=48.11 E-value=4.4e+02 Score=29.49 Aligned_cols=207 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred cEEEEEeCCCeEE------------------------EEEeCCcEEEeCCccCCCCccCCCCCcceecceeecCCCCCCc
Q 001361 358 NVELVACGEHHTC------------------------AVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIH 413 (1092)
Q Consensus 358 ~I~~Ia~G~~hs~------------------------aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~ 413 (1092)
.|.-+++|..|++ -||.+++..+-+.+ ..-.|-.-+..+..--..+.+...++.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~--qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN--QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC--CeeEEEEccCCCCCceeEEeccCCceE
Q ss_pred EEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCCeEEEEecCCceEEEEEEeeecCCCCccCC
Q 001361 414 VSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCS 493 (1092)
Q Consensus 414 I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLte~~~~~s~~~~~~ 493 (1092)
.+.+-|-..-.+-=.+||.+-.| +......++.......+.-+-+.-...|-+.-+ .
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIW-----------dlR~~~~qR~~~~~spVn~vvlhpnQteLis~d------------q 144 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIW-----------DLRSLSCQRNYQHNSPVNTVVLHPNQTELISGD------------Q 144 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEE-----------eccCcccchhccCCCCcceEEecCCcceEEeec------------C
Q ss_pred CCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCccceee
Q 001361 494 SGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRV 573 (1092)
Q Consensus 494 ~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v 573 (1092)
+|.|+.|- |+...-...+.|.....+ .-..|.-.....+|.++.|++|+|-.-. .......-...
T Consensus 145 sg~irvWD------l~~~~c~~~liPe~~~~i---~sl~v~~dgsml~a~nnkG~cyvW~l~~------~~~~s~l~P~~ 209 (311)
T KOG0315|consen 145 SGNIRVWD------LGENSCTHELIPEDDTSI---QSLTVMPDGSMLAAANNKGNCYVWRLLN------HQTASELEPVH 209 (311)
T ss_pred CCcEEEEE------ccCCccccccCCCCCcce---eeEEEcCCCcEEEEecCCccEEEEEccC------CCccccceEhh
Q ss_pred ccccCCCCEEEEEEcCCEEEEEE--cCCeEEEE
Q 001361 574 EGKLTKNFVEEIACGDYHVAVLT--SRTEVYTW 604 (1092)
Q Consensus 574 ~~~l~~~~I~~Ia~G~~HslaLT--~dG~Vy~W 604 (1092)
....-...|.+.-.......+.| +|-+|+.|
T Consensus 210 k~~ah~~~il~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 210 KFQAHNGHILRCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred heecccceEEEEEECCCCcEEEeecCCceEEEE
No 202
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=48.10 E-value=97 Score=35.69 Aligned_cols=69 Identities=23% Similarity=0.379 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH-------HHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQ-----------LQEIELERTTRQLKEALAVAGEETAKCRAAKD-------VIKSLTAQLKD 927 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~-----------~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake-------~ik~l~~qlk~ 927 (1092)
.+|-..|+.....|..+++ ..+.|+|.+..+++.+...+..|.+|++.-++ =|..+..+-++
T Consensus 134 ~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~ 213 (309)
T PF09728_consen 134 REENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKE 213 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667776666666655 45688999999999999999999999999999 66666666666
Q ss_pred HHhhCCC
Q 001361 928 MAEMLPV 934 (1092)
Q Consensus 928 ~~e~lp~ 934 (1092)
|-+.|-.
T Consensus 214 Lr~QL~~ 220 (309)
T PF09728_consen 214 LREQLNL 220 (309)
T ss_pred HHHHHHH
Confidence 6666544
No 203
>PLN02943 aminoacyl-tRNA ligase
Probab=48.08 E-value=31 Score=45.84 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhhhHHHHHHHHHHHHHHHHhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL-------AVAGEETAKCRAAKDVIKSLTAQLKDMAEM 931 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~-------~~a~ee~~k~~~ake~ik~l~~qlk~~~e~ 931 (1092)
.++++.+.+|++.|+.+.+.++.||+++++++...- .+..+|-+|.+..++-|+.|...|+.+.+.
T Consensus 881 l~~~iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~~ 953 (958)
T PLN02943 881 LADMVDISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKST 953 (958)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556677778888888888888888998888887432 455677777777888888887777777653
No 204
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.89 E-value=0.76 Score=52.62 Aligned_cols=61 Identities=25% Similarity=0.567 Sum_probs=0.0
Q ss_pred cccccccccCCCCCcCCccccccccccc--ccceEEeccCCCcccccccCCCCCCCeeeCccchhhh
Q 001361 652 WVSGVDQSMCSGCRIPFNFKRKRHNCYN--CGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKL 716 (1092)
Q Consensus 652 wvs~~d~s~C~~C~~~F~~~~krhhC~~--CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l 716 (1092)
|-.+.+...|..|...|.-.+-..+|.. |+.+||-.|+ +..+|.+.. ..|..||+-|+..+
T Consensus 462 ~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~--Katvp~l~~--e~~akv~rlq~eL~ 524 (542)
T KOG0993|consen 462 WQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMNCL--KATVPSLPN--ERPAKVCRLQHELL 524 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHH--Hhhcccccc--cchHHHHHHHHHHh
No 205
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.73 E-value=94 Score=40.50 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=15.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhCCCc
Q 001361 908 TAKCRAAKDVIKSLTAQLKDMAEMLPVG 935 (1092)
Q Consensus 908 ~~k~~~ake~ik~l~~qlk~~~e~lp~~ 935 (1092)
.+|..++..-.+-+.++|++..+++-..
T Consensus 856 ~~kv~~~~~~~~~~~~el~~~k~k~~~~ 883 (1174)
T KOG0933|consen 856 EAKVDKVEKDVKKAQAELKDQKAKQRDI 883 (1174)
T ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555566676666555444
No 206
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=47.62 E-value=70 Score=34.46 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
-.+|..+..+...|++-++..+.|++.++++++.- ..+-...+.+|.-++.++.+|+++
T Consensus 47 ~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y----~kdK~~L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 47 EKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY----EKDKQSLQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777777777777777751 112222334566666666666554
No 207
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.58 E-value=1e+02 Score=34.47 Aligned_cols=99 Identities=20% Similarity=0.288 Sum_probs=55.8
Q ss_pred cCCeEEEEecC-CC-ceeEeEEEeCCCCeEEEec---CC-ccceEEcc--ceeecccCCCChhhhcCCCC---CCCCCeE
Q 001361 24 KGAHLLKYGRR-GK-PKFCPFRLANDESILIWIS---GK-EEKHLKLS--HVSRIIPGQRTPIFQRYPRP---EKEYQSF 92 (1092)
Q Consensus 24 ~Gt~l~K~~~~-~k-p~~r~f~L~~d~~~l~W~~---~k-~~~~i~l~--~I~eVr~G~~t~~f~~~~~~---~~~~~~F 92 (1092)
+-.+|+|.+.+ -+ -|+|.|.|..+ +|.+.. +| +...|+|. +|++|---.+---|+-|.-. ..-.-|=
T Consensus 262 REGWLlKlgg~rvktWKrRWFiLtdN--CLYYFe~tTDKEPrGIIpLeNlsir~VedP~kP~cfEly~ps~~gq~IKACK 339 (395)
T KOG0930|consen 262 REGWLLKLGGNRVKTWKRRWFILTDN--CLYYFEYTTDKEPRGIIPLENLSIREVEDPKKPNCFELYIPSNKGQVIKACK 339 (395)
T ss_pred ccceeeeecCCcccchhheeEEeecc--eeeeeeeccCCCCCcceeccccceeeccCCCCCCeEEEecCCCCcCeeeeec
Confidence 44578888552 22 26777888765 566654 44 45567886 45555443333333322110 0000000
Q ss_pred -----EEEEcCc-eeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 93 -----SLIYNDR-SLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 93 -----Siiy~~r-sLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
-+|-|.+ .--+-|.+++|.+.|+..+++.|++
T Consensus 340 Te~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~ 377 (395)
T KOG0930|consen 340 TEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISR 377 (395)
T ss_pred ccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhcc
Confidence 1222332 3457899999999999999999974
No 208
>PHA02790 Kelch-like protein; Provisional
Probab=47.46 E-value=1.4e+02 Score=36.36 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=10.8
Q ss_pred EEEeCCcEEEeCCc
Q 001361 371 AVTLSGDMYTWGGS 384 (1092)
Q Consensus 371 aLT~dG~Vy~wG~n 384 (1092)
++.-+|+||..|..
T Consensus 314 ~v~~~~~iYviGG~ 327 (480)
T PHA02790 314 GVPANNKLYVVGGL 327 (480)
T ss_pred EEEECCEEEEECCc
Confidence 34568999999964
No 209
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=47.44 E-value=68 Score=27.20 Aligned_cols=37 Identities=11% Similarity=0.345 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAV 903 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~ 903 (1092)
.||-++...+.+++.+-+++..+|++.++.+++-+.|
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777665543
No 210
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=47.15 E-value=52 Score=37.47 Aligned_cols=40 Identities=33% Similarity=0.329 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAG 905 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ 905 (1092)
.||-.+|+.|+.+|.|+|.+.+.|-|.+.+.+.||.+.-.
T Consensus 140 ~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq 179 (401)
T PF06785_consen 140 REENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQ 179 (401)
T ss_pred HHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999987543
No 211
>PRK14156 heat shock protein GrpE; Provisional
Probab=46.97 E-value=95 Score=32.78 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
.+|+..|++|+..|+.+.-.+.+|++-++|+.+.-...+..-+. -+.++++|-.+.+
T Consensus 33 ~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~-~~~~~~LLpVlDn 89 (177)
T PRK14156 33 KSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRS-QDLAKAILPSLDN 89 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 56677788888888888888888888888887765554443332 3555555555544
No 212
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=46.94 E-value=65 Score=39.37 Aligned_cols=62 Identities=23% Similarity=0.373 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCcc
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVGA 936 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~~ 936 (1092)
.|++.++-.+|.. .+..+..+|..+...+++ =|-++++..+.+++.++..|.++|-.|||++
T Consensus 67 ~~~l~~~w~~v~~---~~~~r~~~I~~l~~~L~~------~E~~R~~~l~~~l~~~~~~L~~ia~~~~~dv 128 (473)
T PF14643_consen 67 IQDLLELWDEVAE---HSQKRKQWIKELDEDLEE------LEKERADKLKKVLRKYVEILEKIAHLLPPDV 128 (473)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHccCcHHH
Confidence 7777777777765 555677788888777777 6888889999999999999999999999997
No 213
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=46.87 E-value=45 Score=27.13 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 870 IKLRAQVEELTRKSQLQEIELERTTR 895 (1092)
Q Consensus 870 ~~l~~qv~~L~~~~~~~~~ei~~~~~ 895 (1092)
.-|+.||++|..+.+.++.-+-+++|
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666555555554443
No 214
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.72 E-value=66 Score=38.57 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=34.8
Q ss_pred CCCceeeeec-cceEEE----EEEcCCC----ccceeEEE-eec-cccCHHHHHHHHH------HhHhhhHhhcccc
Q 001361 1017 QGDEWVEQDE-TGVYIT----LVALPGG----LKDLKRVR-FSR-KKFSEKQAEQWWA------ANRARVYQQYNVS 1076 (1092)
Q Consensus 1017 ~~~~~~~~~e-pgv~~t----~~~~~~g----~~~~~rv~-f~~-~~f~~~~a~~ww~------~n~~~~~~~~~~~ 1076 (1092)
.-.|++++.+ |.-|.- |+.=.+. +|.|-||. |.+ |+|.=-..+.=|. +|-+.|.+...++
T Consensus 242 ~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLP 318 (429)
T COG0172 242 HRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELP 318 (429)
T ss_pred hcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 4568898776 544432 3333444 67788875 776 7776333333332 3566677776654
No 215
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.61 E-value=1.1e+02 Score=33.08 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELER 892 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~ 892 (1092)
.+|+.+|+++..++.++.++...|+|.
T Consensus 99 e~el~~l~~~l~~~~~~~~~~~~~l~~ 125 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNTWNQRTAEMQQ 125 (206)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455555555555554444444433333
No 216
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=46.56 E-value=1.1e+02 Score=35.16 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=30.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhh
Q 001361 861 DAKRTSEEVIKLRAQVEELTRKSQLQEIELERTT---RQLKEALAVAGEETAKCR 912 (1092)
Q Consensus 861 ~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~---~~~~ea~~~a~ee~~k~~ 912 (1092)
+++++-+|+.+||.|-+.|..++-+...=+-+++ +++++.+.-+.||-...+
T Consensus 93 s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lq 147 (401)
T PF06785_consen 93 SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQ 147 (401)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 3344478888888877777666554443333332 455566666666655433
No 217
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=46.41 E-value=85 Score=34.01 Aligned_cols=45 Identities=29% Similarity=0.322 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 910 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k 910 (1092)
.+.|....++...|+++.+..+.++++..++++.|+.--.|+.|+
T Consensus 43 ~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr 87 (221)
T PF04012_consen 43 RQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAR 87 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 455555555778899999999999999999999998776666664
No 218
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=46.33 E-value=1.7e+02 Score=27.44 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
.++..|+.|...+..+...++.++++++--++
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~ 36 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLE 36 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666655555544433
No 219
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.23 E-value=62 Score=35.25 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=46.5
Q ss_pred CCCEEEEEEcCCEEEEEEcCCeEEEEeCCCCCCCCCC-CCCC----------cccCceee---eccCCceeeEEecCCcc
Q 001361 579 KNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHG-DTDD----------RNFPSLVE---ALKDKQVKSIVCGTSFT 644 (1092)
Q Consensus 579 ~~~I~~Ia~G~~HslaLT~dG~Vy~WG~n~~GQLG~G-~~~~----------~~~P~~V~---~l~~~~V~~IacG~~~T 644 (1092)
+..+..+.|-..+.++||.+|.+|+|--...-..-.+ ...+ ...|.... .-.+..|+.++.|..|+
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~ 91 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYS 91 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEE
Confidence 4678889999999999999999999965432111111 0000 11111111 11344566666666666
Q ss_pred eeeeeecccccccc
Q 001361 645 AAICLHKWVSGVDQ 658 (1092)
Q Consensus 645 ~al~~~kwvs~~d~ 658 (1092)
+-.....|+--.|.
T Consensus 92 y~~~L~~W~~vsd~ 105 (219)
T PF07569_consen 92 YSPDLGCWIRVSDS 105 (219)
T ss_pred eccccceeEEeccc
Confidence 66666667665554
No 220
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.14 E-value=1.6e+02 Score=28.26 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERT--TRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEM 931 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~--~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~ 931 (1092)
..++.+|+..+..+.++...+|.+++.+ ++.+.+=-..-+|=..+.++..+-|+.++.|+.=|-|+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777666 55544433333333445566777777777776655543
No 221
>PRK14155 heat shock protein GrpE; Provisional
Probab=45.97 E-value=89 Score=33.87 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVA 904 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a 904 (1092)
.+|+.+|++|+..|+.+.-.+.+|++.++|+.+.-...+
T Consensus 19 ~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 57 (208)
T PRK14155 19 AQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDA 57 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888888887777544443
No 222
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=45.74 E-value=1.7e+02 Score=28.95 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 862 AKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 862 l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
++..--|+..|+.|+..|.++-+.+..||-++.+..++
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~ 62 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENEE 62 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555555555555555555444444
No 223
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=45.57 E-value=87 Score=37.81 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
+-+++++|.++..|.++=+.|-.|.++++++-+
T Consensus 65 va~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~ 97 (472)
T TIGR03752 65 VAEVKELRKRLAKLISENEALKAENERLQKREQ 97 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888999999999998888888888888876543
No 224
>PLN02320 seryl-tRNA synthetase
Probab=45.49 E-value=1.1e+02 Score=37.43 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=46.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCc
Q 001361 859 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTR--QLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVG 935 (1092)
Q Consensus 859 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~--~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~ 935 (1092)
.|.+-+.-++..+++.|++.|+.+......+|...++ .+++..+-+.+=..+.++.++-++.+.++|.++.-+||--
T Consensus 92 vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~ 170 (502)
T PLN02320 92 LELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNM 170 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3554444555566666666666666666655544111 1233333333334567778888999999999998888754
No 225
>PRK14143 heat shock protein GrpE; Provisional
Probab=45.46 E-value=1.8e+02 Score=32.27 Aligned_cols=57 Identities=12% Similarity=0.241 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
.+|+..|+.++..|+.+.-.+.++++-++|+.+.-..-+.. -+..+.++++|-.+.+
T Consensus 73 ~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~-~a~~~~~~~lLpV~Dn 129 (238)
T PRK14143 73 EQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL-QLKCNTLSEILPVVDN 129 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhH
Confidence 56777888888888888888888888888887665544444 3445666666655554
No 226
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=45.06 E-value=77 Score=30.33 Aligned_cols=45 Identities=31% Similarity=0.325 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLK 926 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk 926 (1092)
.+||.-|+.|+..|..+...+++|=-.++ .-+--|.++.|.+||-
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk----------------~~~spe~L~ql~~~~~ 110 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLK----------------TLASPEQLAQLPAQLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhCCHHHHHHHHHhcc
Confidence 67777777777777777666665544332 2334566666666654
No 227
>PRK10884 SH3 domain-containing protein; Provisional
Probab=44.97 E-value=1.6e+02 Score=31.83 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
..+.+|+.|+..|+.+....+.+.+..+.+++
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~ 124 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQ 124 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444455555555555554444443333333
No 228
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=44.76 E-value=33 Score=45.86 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhhhHHHHHHHHHHHHHHHHhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL-------AVAGEETAKCRAAKDVIKSLTAQLKDMAEM 931 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~-------~~a~ee~~k~~~ake~ik~l~~qlk~~~e~ 931 (1092)
+++++.+.+|+..|+++.+.++.||+++++++...- .+..+|-+|...+++-|..|...|+++.+.
T Consensus 921 l~~~id~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~~~ 993 (995)
T PTZ00419 921 LDEFIDLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELKSL 993 (995)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566777778888888888888888888885322 455666777777777777777777776643
No 229
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=44.67 E-value=1e+02 Score=32.95 Aligned_cols=57 Identities=26% Similarity=0.306 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
.+++..|++|+..|+.+.....+|++-++++.+.-..-|. ..+.-+.|++++-.|.+
T Consensus 42 ~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~-k~a~e~~~~dlLpviDn 98 (193)
T COG0576 42 QQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAK-KYAIEKFAKDLLPVIDN 98 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999988888876554444 33334555555555544
No 230
>PHA02713 hypothetical protein; Provisional
Probab=44.56 E-value=75 Score=39.67 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=13.2
Q ss_pred CceEEEEEcCCeEEEEeCC
Q 001361 314 GRHAALVTKQGEVFSWGEE 332 (1092)
Q Consensus 314 ~~hs~~Lt~dG~Vy~wG~N 332 (1092)
..+..+..-+|+||++|..
T Consensus 342 R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 342 RCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhceeEEEECCEEEEECCc
Confidence 3344455668999999964
No 231
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=44.56 E-value=29 Score=38.29 Aligned_cols=36 Identities=42% Similarity=0.493 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL 901 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~ 901 (1092)
.+...++-++|.+|.+++.+++.+|++...++++|.
T Consensus 28 ~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~ 63 (237)
T PF00261_consen 28 EKRAEKAEAEVASLQRRIQLLEEELERAEERLEEAT 63 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 555556666888888888888888887766555544
No 232
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.50 E-value=77 Score=39.96 Aligned_cols=44 Identities=25% Similarity=0.346 Sum_probs=26.2
Q ss_pred CCcchhhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 854 SPKIVVDDAKRT----SEEVIKLRAQVEELTRKSQLQEIELERTTRQL 897 (1092)
Q Consensus 854 ~~~~~~~~l~~~----~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~ 897 (1092)
.-+++++++++. .-||.+|++++..|.+++..+--|-|++.-|+
T Consensus 469 t~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 469 TQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 345566666655 66777777777666666555554444444333
No 233
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=44.31 E-value=9.3e+02 Score=32.22 Aligned_cols=203 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred CCcEEEEEeCCCe--EEEEEeCCcEEEeCCccCCCCccCCCCCcceecce---eecCCCCCCcEEEEEeCCCeEEEEEcC
Q 001361 356 NINVELVACGEHH--TCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPK---KLNGPLEGIHVSSVSCGPWHTAVVTSA 430 (1092)
Q Consensus 356 ~~~I~~Ia~G~~h--s~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~---~v~~~l~~~~I~~IscG~~Ht~aLt~d 430 (1092)
...|.+|+.+..+ .++|+.+|.|+.|-..................... ..........+.++.+-..+.+++..+
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD 505 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Q ss_pred CcEEEeecCCCcccCCCCCcccccceeeecCCCCeEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCC
Q 001361 431 GQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGH 510 (1092)
Q Consensus 431 G~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~ 510 (1092)
.. -..+..-.+...+.........+....+.-.....+...+.+++-- .+|++| .+..
T Consensus 506 ~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~-----------~~G~v~--------~~~~ 563 (928)
T PF04762_consen 506 SD---SNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQT-----------NDGKVF--------QLSS 563 (928)
T ss_pred cC---cccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEE-----------CCCEEE--------Eeec
Q ss_pred CCCCcceeeEEecccCCCCeEEEEeeCc---EEEEEecCCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEEE
Q 001361 511 GDKEARLVPTCVAALVEPNFCQVSCGHS---LTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIAC 587 (1092)
Q Consensus 511 g~~~~~~~P~~V~~l~~~~I~~Ia~G~~---htlaLt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~ 587 (1092)
....... .+.+.+...--+...-+.. +.+.|+.+|++|+=+ .+....+.++..
T Consensus 564 ~~~~~~~--~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~n~----------------------~~la~~~tSF~v 619 (928)
T PF04762_consen 564 DGELSQI--VKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYANS----------------------RLLASNCTSFAV 619 (928)
T ss_pred CCCcccc--ccCCCCCcEEEEEEECCccceeEEEEECCCCEEEECC----------------------EEEecCCceEEE
Q ss_pred cCCEEEEEEcCCeEEEE
Q 001361 588 GDYHVAVLTSRTEVYTW 604 (1092)
Q Consensus 588 G~~HslaLT~dG~Vy~W 604 (1092)
...|-++.|..-.+...
T Consensus 620 ~~~~Ll~TT~~h~l~fv 636 (928)
T PF04762_consen 620 TDSFLLFTTTQHTLKFV 636 (928)
T ss_pred EcCEEEEEecCceEEEE
No 234
>PF15404 PH_4: Pleckstrin homology domain
Probab=44.20 E-value=1.4e+02 Score=31.77 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=20.8
Q ss_pred cCCeEEEEecCCCceeEeEEEeCCCCeEEEe
Q 001361 24 KGAHLLKYGRRGKPKFCPFRLANDESILIWI 54 (1092)
Q Consensus 24 ~Gt~l~K~~~~~kp~~r~f~L~~d~~~l~W~ 54 (1092)
.|-...|-++.+.=+.+++.|.+. ..|+..
T Consensus 2 sG~LY~K~~khs~F~~~~vvL~~G-~Li~f~ 31 (185)
T PF15404_consen 2 SGYLYQKPRKHSTFKKYFVVLIPG-FLILFQ 31 (185)
T ss_pred CceeeecCCCCCCceEEEEEEeCC-EEEEEE
Confidence 466677777777778888888876 444443
No 235
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=44.12 E-value=1.1e+02 Score=29.95 Aligned_cols=91 Identities=18% Similarity=0.251 Sum_probs=50.0
Q ss_pred cCCeEEEE-ecCCCceeEeEEEeCCCCeEEEecCC---ccce----EEccceeecccCCCChhhhcCCCCCCCCCeEEEE
Q 001361 24 KGAHLLKY-GRRGKPKFCPFRLANDESILIWISGK---EEKH----LKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLI 95 (1092)
Q Consensus 24 ~Gt~l~K~-~~~~kp~~r~f~L~~d~~~l~W~~~k---~~~~----i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii 95 (1092)
+|-.-+|- ++++| |.++|.|-.. -|...+.. +.+. ..+++. .|=.|.. +++. -..+-+.||.|=
T Consensus 3 ~g~LylK~~gkKsW-Kk~~f~LR~S--GLYy~~Kgksk~srdL~cl~~f~~~-nvY~~~~---~kKk-~kAPTd~~F~~K 74 (114)
T cd01259 3 EGPLYLKADGKKSW-KKYYFVLRSS--GLYYFPKEKTKNTRDLACLNLLHGH-NVYTGLG---WRKK-YKSPTDYCFGFK 74 (114)
T ss_pred cceEEEccCCCccc-eEEEEEEeCC--eeEEccCCCcCCHHHHHHHHhcccC-cEEEEec---hhhc-cCCCCCceEEEe
Confidence 46666775 78877 5567778765 24433321 1111 122222 1222221 1221 134556788885
Q ss_pred EcC------cee-EEEeCCHHHHHHHHHHHHHHH
Q 001361 96 YND------RSL-DLICKDKDEAEVWFTGLKALI 122 (1092)
Q Consensus 96 y~~------rsL-DLia~~~~e~~~Wv~gL~~Li 122 (1092)
... +.| -|.|+|++.++.|+++||.+-
T Consensus 75 ~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 75 AVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred ccccCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 522 333 378889999999999999754
No 236
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=44.10 E-value=2.2e+02 Score=28.59 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH----HHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCcc
Q 001361 870 IKLRAQVEELTRKSQLQEIELERTTRQLK----EALAV----AGEETAKCRAAKDVIKSLTAQLKDMAEMLPVGA 936 (1092)
Q Consensus 870 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~----ea~~~----a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~~ 936 (1092)
..|++++..|.++|++++.+.++.-+..+ ....- ...|-++ -.|.++-|..||+.+. +||-|.
T Consensus 23 ~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~---r~e~k~~l~~ql~qv~-~L~lgs 93 (131)
T PF11068_consen 23 QELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQE---RLEQKNQLLQQLEQVQ-KLELGS 93 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HS-TT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh-cCCCCC
Confidence 46788999999999999999988877765 33333 3334444 4567778888998875 899984
No 237
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.01 E-value=1.3e+02 Score=33.76 Aligned_cols=66 Identities=12% Similarity=0.240 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
.++..++.++..+..+.+.++.+|+.+..|+++.-.--.+.=++.|..+.=|+.|...+++--+.|
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444332222333333445555555555555444443
No 238
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.87 E-value=98 Score=40.24 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTT 894 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~ 894 (1092)
.+|+.+++.+++.++++.+.+..++++-+
T Consensus 531 ~~~~~~~~~e~~~~~~~l~~~~~~l~~~~ 559 (771)
T TIGR01069 531 NEHLEKLLKEQEKLKKELEQEMEELKERE 559 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555554444444433
No 239
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=43.82 E-value=34 Score=30.49 Aligned_cols=29 Identities=34% Similarity=0.391 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTT 894 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~ 894 (1092)
.+|-..|++||..|.++.+.++..++++.
T Consensus 41 ~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 41 SQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66777888899999999998888888764
No 240
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.80 E-value=81 Score=38.11 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=32.9
Q ss_pred CCceeeeeccceEEEEEEcCCCccceeEEEeeccccCHHHHHHHHHHhHhhhHhhccc
Q 001361 1018 GDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFSEKQAEQWWAANRARVYQQYNV 1075 (1092)
Q Consensus 1018 ~~~~~~~~epgv~~t~~~~~~g~~~~~rv~f~~~~f~~~~a~~ww~~n~~~~~~~~~~ 1075 (1092)
+..-||+.--| ||. -||.+.+|=--.+|.- ..=|..||.-=..-|-+-+..
T Consensus 291 ~G~vie~~V~G-~V~----~dGK~GiRGrvVsk~G--~ila~A~~AG~l~GiG~~~~~ 341 (475)
T PRK13729 291 NGKTIDMPIKG-HVS----FRGKNGIKGEVVMRNG--KILGWAWGAGFVDGIGQGMER 341 (475)
T ss_pred CCcEEEEEEEE-EEc----cCCcCCCCceEEecch--HHHHHHHHHHHHHHHHHHhhh
Confidence 34567777777 542 4888888877777543 566667776655555555543
No 241
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=43.63 E-value=2.4e+02 Score=27.75 Aligned_cols=66 Identities=12% Similarity=0.193 Sum_probs=40.3
Q ss_pred eEEEEecCCC-ceeEeEEEeCCCCeEEEec---CCccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC
Q 001361 27 HLLKYGRRGK-PKFCPFRLANDESILIWIS---GKEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND 98 (1092)
Q Consensus 27 ~l~K~~~~~k-p~~r~f~L~~d~~~l~W~~---~k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~ 98 (1092)
+|+-|..+-+ .|+++++||.. .-....+ .|--|.|+|++|..|..-.. +. ......+.||=|+...
T Consensus 5 WmVHyT~~d~~rKRhYWrLDsK-~Itlf~~e~~skyyKeIPLsEIl~V~~~~~---~~--~~~~~~~hcFEi~T~~ 74 (117)
T cd01239 5 WMVHYTSSDNRRKKHYWRLDSK-AITLYQEESGSRYYKEIPLAEILSVSSNNG---DS--VLAKHPPHCFEIRTTT 74 (117)
T ss_pred eEEEEecCccceeeeEEEecCC-eEEEEEcCCCCeeeEEeehHHheEEeccCC---Cc--CCCCCCCcEEEEEecC
Confidence 5666655533 45666777765 3334433 34456799999999985221 11 1234567899998854
No 242
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=43.40 E-value=1.6e+02 Score=28.41 Aligned_cols=87 Identities=20% Similarity=0.306 Sum_probs=52.0
Q ss_pred HhcCCeEEEE----ecCC-CceeEeEEEeCCCCeEEEecCC---ccceEEccceeecccCCCChhhhcCCCCCCCCCeEE
Q 001361 22 LKKGAHLLKY----GRRG-KPKFCPFRLANDESILIWISGK---EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFS 93 (1092)
Q Consensus 22 L~~Gt~l~K~----~~~~-kp~~r~f~L~~d~~~l~W~~~k---~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FS 93 (1092)
|..|..++|. +++| -.+.|.|-|... -+|++.... .+..|+++.-..|. ......|.
T Consensus 7 l~~ge~Il~~g~v~K~kgl~~kkR~liLTd~-PrL~Yvdp~~~~~KGeI~~~~~l~v~--------------~k~~~~F~ 71 (104)
T PF14593_consen 7 LNPGELILKQGYVKKRKGLFAKKRQLILTDG-PRLFYVDPKKMVLKGEIPWSKELSVE--------------VKSFKTFF 71 (104)
T ss_dssp TT-T--EEEEEEEEEEETTEEEEEEEEEETT-TEEEEEETTTTEEEEEE--STT-EEE--------------ECSSSEEE
T ss_pred hcCCCeEEEEEEEEEeeceEEEEEEEEEccC-CEEEEEECCCCeECcEEecCCceEEE--------------EccCCEEE
Confidence 3446666554 2232 257777777755 788887743 24557775222222 22235799
Q ss_pred EEEcCceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 94 LIYNDRSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 94 iiy~~rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
|...+|+-.|... ...|..|+.+++.++.+
T Consensus 72 I~tp~RtY~l~d~-~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 72 IHTPKRTYYLEDP-EGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp EEETTEEEEEE-T-TS-HHHHHHHHHHHHHH
T ss_pred EECCCcEEEEECC-CCCHHHHHHHHHHHHHH
Confidence 9999999998875 45699999999998865
No 243
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.37 E-value=72 Score=28.12 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQ 896 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~ 896 (1092)
+.-+.-|+-+|+.|+++-..+..|.|.++..
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q~~q~~ 47 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQ 47 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 4444555556666666666665555544433
No 244
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.31 E-value=89 Score=40.60 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHHHH
Q 001361 107 DKDEAEVWFTGLKALI 122 (1092)
Q Consensus 107 ~~~e~~~Wv~gL~~Li 122 (1092)
+.++.+.|..-+..++
T Consensus 39 ~~~~i~~~l~~~~e~~ 54 (771)
T TIGR01069 39 SVEESKEIIIKLTALG 54 (771)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 245
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=43.23 E-value=1.2e+02 Score=27.12 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 001361 911 CRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 911 ~~~ake~ik~l~~qlk~~ 928 (1092)
..+.++=|++|-.+|+++
T Consensus 55 ~~~~~~rl~~LL~kl~~v 72 (72)
T PF06005_consen 55 RNAWQERLRSLLGKLEEV 72 (72)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhhhcC
Confidence 445777777777777653
No 246
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=43.03 E-value=1e+02 Score=40.16 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=5.5
Q ss_pred CHHHHHHHHHHHH
Q 001361 107 DKDEAEVWFTGLK 119 (1092)
Q Consensus 107 ~~~e~~~Wv~gL~ 119 (1092)
+.++.+.|..-..
T Consensus 39 ~~~~i~~~l~~~~ 51 (782)
T PRK00409 39 DFEEVEELLEETD 51 (782)
T ss_pred CHHHHHHHHHHHH
Confidence 3444444444333
No 247
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=42.73 E-value=1.1e+02 Score=35.80 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 862 AKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQL 897 (1092)
Q Consensus 862 l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~ 897 (1092)
|+++.++|..|+.++..++-++++...+.+.+-+++
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466676666666665555555555554444444
No 248
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=42.66 E-value=1.4e+02 Score=33.26 Aligned_cols=6 Identities=17% Similarity=0.385 Sum_probs=2.5
Q ss_pred HHHHHH
Q 001361 922 TAQLKD 927 (1092)
Q Consensus 922 ~~qlk~ 927 (1092)
..+|++
T Consensus 111 ~~~L~~ 116 (251)
T PF11932_consen 111 IDELEQ 116 (251)
T ss_pred HHHHHH
Confidence 334444
No 249
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=42.59 E-value=1.7e+02 Score=29.80 Aligned_cols=60 Identities=18% Similarity=0.255 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
..+.++.+++..+|+.+.+.++++|+.++.....+..= ++. +|.+|-.|..||-.|+..|
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~d----aEn---~k~eie~L~~el~~lt~el 68 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLERELEMSQENKECLILD----AEN---SKAEIETLEEELEELTSEL 68 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888888888888888777665433 333 4455555666666655444
No 250
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=42.45 E-value=74 Score=31.95 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSL 921 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l 921 (1092)
-+++.+|+.+...|+++.+.+..++..+...+.| .+.+++.|+.|
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e-----------~~~~~e~l~~l 49 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINE-----------LDTAKETLEEL 49 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhh
Confidence 4567777777777777777777777777666666 55666776644
No 251
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=42.20 E-value=1.4e+02 Score=34.98 Aligned_cols=56 Identities=27% Similarity=0.276 Sum_probs=43.5
Q ss_pred CCCCCCCcchhhhhhhh----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 001361 849 LSGLASPKIVVDDAKRT----SEEVIKLRAQVEELTRKSQLQE---IELERTTRQLKEALAVA 904 (1092)
Q Consensus 849 ~~~~~~~~~~~~~l~~~----~qev~~l~~qv~~L~~~~~~~~---~ei~~~~~~~~ea~~~a 904 (1092)
.+||--.|..+..||++ ||-|+.||.+-..|.+++|..- .||+.+=.|+||-...+
T Consensus 117 nSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkV 179 (558)
T PF15358_consen 117 NSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKV 179 (558)
T ss_pred cccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 46666777788889988 9999999999999999888765 45666667777655443
No 252
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=41.95 E-value=1.7e+02 Score=28.43 Aligned_cols=84 Identities=11% Similarity=0.156 Sum_probs=52.9
Q ss_pred EEEEec-CCCceeEeEEEeCCCCeEEEecC---Cc-----cceEEcc--ceeecccCCCChhhhcCCCCCCCCCeEEEEE
Q 001361 28 LLKYGR-RGKPKFCPFRLANDESILIWISG---KE-----EKHLKLS--HVSRIIPGQRTPIFQRYPRPEKEYQSFSLIY 96 (1092)
Q Consensus 28 l~K~~~-~~kp~~r~f~L~~d~~~l~W~~~---k~-----~~~i~l~--~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy 96 (1092)
|.+++. +|+.+.|+|+|=.. +|+.+.. +. +..|.++ +|..+.-|..-. ....-..+|=|+.
T Consensus 8 l~~~s~~~g~~q~R~~FLFD~--~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~------~~~~~knafkl~~ 79 (109)
T cd01224 8 ATRQKQNKGWNSSRVLFLFDH--QMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFS------SGHTIKNSLKIYS 79 (109)
T ss_pred EEEEecccCCcccEEEEEecc--eEEEEecccccCCcEEEEEEEEcccEEEEECCCCcccc------CCceeEEEEEEEE
Confidence 445544 58999999999764 5655541 11 2235444 334444442210 0112245788888
Q ss_pred cC--ceeEEEeCCHHHHHHHHHHHH
Q 001361 97 ND--RSLDLICKDKDEAEVWFTGLK 119 (1092)
Q Consensus 97 ~~--rsLDLia~~~~e~~~Wv~gL~ 119 (1092)
.+ +.+.|.|+++++-+.|+.+|.
T Consensus 80 ~~~~~~~~f~~Kt~e~K~~Wm~a~~ 104 (109)
T cd01224 80 ESTDEWYLFSFKSAERKHRWLSAFA 104 (109)
T ss_pred cCCCeEEEEEECCHHHHHHHHHHHH
Confidence 54 889999999999999998874
No 253
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=41.44 E-value=1.3e+02 Score=33.88 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
.+..|+.+++.++++.+....+|++.+++++.
T Consensus 71 r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 254
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=41.36 E-value=81 Score=40.65 Aligned_cols=64 Identities=34% Similarity=0.390 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 866 SEEVIKLRAQVEE-LTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 866 ~qev~~l~~qv~~-L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
.+||.+|+.|++. -..+...++..+|++.|-++| |..-=| +|.++..++-+.+.+||..|-.-+
T Consensus 370 ReEve~lr~qL~~ae~~~~~el~e~l~esekli~e-i~~twE--Ekl~ktE~in~erq~~L~~~gis~ 434 (1714)
T KOG0241|consen 370 REEVEKLREQLEQAEAMKLPELKEKLEESEKLIKE-ITVTWE--EKLRKTEEINQERQAQLESMGISL 434 (1714)
T ss_pred HHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHH-HHhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777776665 444555555566666655555 222223 367788888899999999885543
No 255
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=41.34 E-value=1.5e+02 Score=36.52 Aligned_cols=63 Identities=25% Similarity=0.284 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
.++...|..++..|+.+.+.++.+|+..+++.++=-....+-..+..++++-+..|..|+.++
T Consensus 156 ~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~ 218 (546)
T PF07888_consen 156 LKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEA 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666666666666655555544433333333333333444444444443333
No 256
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=41.31 E-value=1.3e+02 Score=28.76 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 871 KLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 871 ~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
..-.||..|.+..+.|..+|..++.+++ +--+-|+++-..|..|-.||
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k--------------~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQK--------------AQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 3444888888888888888888777776 45666788888888888876
No 257
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=41.24 E-value=1.1e+02 Score=34.74 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------hhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 873 RAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK------------CRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 873 ~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k------------~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
+.|...+..+...++.|+...+++++.+...+..|..= ++.+++.++.+.++|..+..++-+
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~ 207 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDA 207 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33667777778888888888888888888887777654 888999999888888877666443
No 258
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=41.11 E-value=35 Score=44.92 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL-------AVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~-------~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
.+.++.+.+|+..|+++.+.++.||+++++++...- .+..+|-+|....++-|+.|..+|+.|
T Consensus 803 l~~~id~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l 872 (874)
T PRK05729 803 LEGLIDVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARL 872 (874)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666777777777777777888777776432 344566666666666677666666654
No 259
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=41.10 E-value=1.3e+02 Score=34.43 Aligned_cols=34 Identities=26% Similarity=0.563 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
-.|+..||.+|..+...-..++.++..++..+++
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~ 86 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELED 86 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHH
Confidence 3344444444443333333333333333333333
No 260
>PRK00846 hypothetical protein; Provisional
Probab=41.06 E-value=1.6e+02 Score=26.75 Aligned_cols=52 Identities=25% Similarity=0.338 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 874 AQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 874 ~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
+.+..|+-+.-.||.-|+.+.+.+-+-+ .+..+ -++-|+-|+.+||+|....
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq----~~I~~---L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADAR----LTGAR---NAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHHHHHHhcccc
Confidence 3455555555555555555444443321 22222 5556667777777776444
No 261
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=40.27 E-value=1e+02 Score=34.86 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELER 892 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~ 892 (1092)
--.|+-|+.||.+|.---..|++||+.
T Consensus 220 t~RMqvlkrQv~SL~~HQ~KLEaEL~q 246 (410)
T KOG4715|consen 220 TARMQVLKRQVQSLMVHQRKLEAELLQ 246 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999887666667777753
No 262
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=40.22 E-value=71 Score=30.72 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTT 894 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~ 894 (1092)
.+|+..++.|+..|+++-+.+..||++++
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555555555555555555554444
No 263
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=40.06 E-value=69 Score=37.09 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 001361 918 IKSLTAQLKDMA 929 (1092)
Q Consensus 918 ik~l~~qlk~~~ 929 (1092)
|+.|.++++.|-
T Consensus 278 v~~Lk~~~~~Le 289 (325)
T PF08317_consen 278 VKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHH
Confidence 344555554443
No 264
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=40.05 E-value=91 Score=35.76 Aligned_cols=96 Identities=21% Similarity=0.220 Sum_probs=0.0
Q ss_pred cchhhhhhhh----HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH------------------------------
Q 001361 856 KIVVDDAKRT----SEEVIKLRAQVEELTRKS---QLQEIELERTTRQLK------------------------------ 898 (1092)
Q Consensus 856 ~~~~~~l~~~----~qev~~l~~qv~~L~~~~---~~~~~ei~~~~~~~~------------------------------ 898 (1092)
+...+.+++. .++..+|+++++.|.+.- +.+..++..+++-++
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~~k~rG~wGE~~Le~iLe~~gl~~~~~y~~ 95 (304)
T PF02646_consen 16 EKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALKNSKTRGNWGEMQLERILEDSGLPEGCDYET 95 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHcCCCcccchhh
Q ss_pred ------------------------------------HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhh----CCCcccc
Q 001361 899 ------------------------------------EALAVAGEETAKCRAAKDVIKSLTAQLKDMAEM----LPVGAVR 938 (1092)
Q Consensus 899 ------------------------------------ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~----lp~~~~~ 938 (1092)
+.+.-|.+|..|-++.|++++++..++|++++| ++++..-
T Consensus 96 Q~~~~~~~~~~rpD~vI~LP~~~~i~IDSK~pl~~y~~~~~a~~~~~~~~~~k~~~~~vr~hi~~Ls~K~Y~~i~~~~t~ 175 (304)
T PF02646_consen 96 QVSLDEDGNGLRPDFVIHLPGGRHIPIDSKFPLEAYERYIEAEDEEEREAALKEHAKSVRKHIKELSSKDYWNIIPPNTP 175 (304)
T ss_pred cccccCCCCCcCceEEEEcCCCCEEEEecCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCC
Q ss_pred cCCCCCCCCCCcc
Q 001361 939 NSNSFHSSPTPAW 951 (1092)
Q Consensus 939 ~~~~~~~~~~~~~ 951 (1092)
++-.|.-+.+..|
T Consensus 176 dfvimFiP~E~~~ 188 (304)
T PF02646_consen 176 DFVIMFIPSESAY 188 (304)
T ss_pred CEEEEEecChHHH
No 265
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=40.01 E-value=2e+02 Score=31.03 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 910 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k 910 (1092)
.+|..+++.|.+.+..+ .+.+|...+++.++-+.-|.+|+.+
T Consensus 93 L~~Ae~~k~eAe~~~~~---ye~~L~~Ar~eA~~Ii~~Ar~ea~~ 134 (204)
T PRK09174 93 LDQAARLKQEADAAVAA---YEQELAQARAKAHSIAQAAREAAKA 134 (204)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666665555544 4455555555555555555555433
No 266
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=39.94 E-value=1.7e+02 Score=28.88 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHH----------------HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKS---QLQEIE----------------LERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLK 926 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~---~~~~~e----------------i~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk 926 (1092)
.+|++..+.|+++|..-| ++.+.+ +.++..+++|+-.-+-.|.+...+-+|.|++--++||
T Consensus 36 k~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK 115 (131)
T KOG1760|consen 36 KADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMDELK 115 (131)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666665433 333333 5677888888888888888888888899988888888
Q ss_pred HH
Q 001361 927 DM 928 (1092)
Q Consensus 927 ~~ 928 (1092)
-|
T Consensus 116 ~~ 117 (131)
T KOG1760|consen 116 KV 117 (131)
T ss_pred HH
Confidence 65
No 267
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=39.86 E-value=1.4e+02 Score=31.51 Aligned_cols=65 Identities=22% Similarity=0.207 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 870 IKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 870 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
..|.+|...++|+...+...++..+.-.+++=..+.|=..|..++|+++++|..+|--+-|--|.
T Consensus 84 qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpq 148 (203)
T KOG3433|consen 84 QELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQ 148 (203)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence 45677888888888888888888888888877777677778888999999998887666555444
No 268
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=39.83 E-value=1.3e+02 Score=35.12 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001361 870 IKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 910 (1092)
Q Consensus 870 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k 910 (1092)
..-..+|..|+.+++.+..+|+..++.+++.+.....|.++
T Consensus 11 ~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~ 51 (344)
T PF12777_consen 11 KETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEE 51 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444788888888888888888777777766665444333
No 269
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=39.72 E-value=9.7 Score=48.90 Aligned_cols=70 Identities=27% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--------------------HHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRK---SQLQEIELERTTRQLKE--------------------ALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~---~~~~~~ei~~~~~~~~e--------------------a~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
+|+..||-|+..|+++ ++.++.+|++|++|+++ ....-.||..|..+.+.-|..+..
T Consensus 291 ~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~ 370 (713)
T PF05622_consen 291 REARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKK 370 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555577777664 45578899999999884 445667888898888888888888
Q ss_pred HHHHHHhhCCCcc
Q 001361 924 QLKDMAEMLPVGA 936 (1092)
Q Consensus 924 qlk~~~e~lp~~~ 936 (1092)
|+.+|..++-...
T Consensus 371 qi~eLe~~l~~~~ 383 (713)
T PF05622_consen 371 QIQELEQKLSEES 383 (713)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 8877776666553
No 270
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=39.62 E-value=2.3e+02 Score=27.32 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
..+..+++.++..+.++...++.++.+.+.-++|
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~e 42 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEE 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777777666666555543
No 271
>PHA02562 46 endonuclease subunit; Provisional
Probab=39.49 E-value=1.1e+02 Score=37.86 Aligned_cols=45 Identities=9% Similarity=0.234 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 910 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k 910 (1092)
.+++.+|++|+..|+.+.+.++..+..++++.+....-..+|-.+
T Consensus 180 ~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~ 224 (562)
T PHA02562 180 NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDE 224 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777766666666665555444444444443
No 272
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=39.49 E-value=1e+03 Score=31.28 Aligned_cols=121 Identities=14% Similarity=0.046 Sum_probs=63.4
Q ss_pred EecCceEEEEEcCCeEEEEeCCCC---CccCCCCCCCCCcceEeeccCCCcEEEEEeC-----CCeEEEEEeCCcEEEeC
Q 001361 311 ACGGRHAALVTKQGEVFSWGEELG---GRLGHGVDSDVSHPKLIDALKNINVELVACG-----EHHTCAVTLSGDMYTWG 382 (1092)
Q Consensus 311 a~G~~hs~~Lt~dG~Vy~wG~N~~---GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G-----~~hs~aLT~dG~Vy~wG 382 (1092)
+....+.+++|+.|++|..-...- +..+.|.. ....+....+.+|+.+.+- ....+++|.+|.+.-.-
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~----i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~ 618 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKP----IVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTS 618 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcC----HHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEE
Confidence 444566889999999999843221 11111111 1112333455677776652 23578889999876553
Q ss_pred CccCCC-CccCCCCCcceecceeecCCCCCCcEEEEE--eCCCeEEEEEcCCcEEEeecCCCcccC
Q 001361 383 GSNCNF-GLLGHGNEMSLWLPKKLNGPLEGIHVSSVS--CGPWHTAVVTSAGQLFTFGDGTFGVLG 445 (1092)
Q Consensus 383 ~n~~~~-GqLG~g~~~~~~~P~~v~~~l~~~~I~~Is--cG~~Ht~aLt~dG~Vy~wG~N~~GQLG 445 (1092)
...+.. ...|. .....-++..++.+. ....+.+++|++|++|.+-....-..|
T Consensus 619 l~~~~~~~r~G~----------~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~g 674 (800)
T TIGR01063 619 LTEFSNIRSNGI----------IAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMG 674 (800)
T ss_pred hHHhhhhccCCc----------ccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcC
Confidence 321100 00010 000001233455443 234578999999999998755444443
No 273
>PRK14141 heat shock protein GrpE; Provisional
Probab=39.42 E-value=1.3e+02 Score=32.63 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 922 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~ 922 (1092)
-+++..|+.|+..|+.+...+-+|++-++|+.+.-...+.+-+. .+.+++++..+.
T Consensus 37 ~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~-~~~~~dLLpViD 92 (209)
T PRK14141 37 PDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGI-AGFARDMLSVSD 92 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHh
Confidence 45566777777777777777777777777776654444433322 344444444443
No 274
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=39.09 E-value=1e+02 Score=37.02 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=47.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 001361 858 VVDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIK 919 (1092)
Q Consensus 858 ~~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik 919 (1092)
+.++.|+++--|++.+.-.+.=.++-..+-.-|+++++|-|||+.+|.|=-+|.+++.++-.
T Consensus 14 vdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~Cn 75 (436)
T PF01093_consen 14 VDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEVCN 75 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666555555555556666667777888999999999999999999999988888654
No 275
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=38.99 E-value=79 Score=30.98 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 872 LRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 872 l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
|..++..|+++++....+++++++++++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~ 105 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKK 105 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555554
No 276
>PF10422 LRS4: Monopolin complex subunit LRS4; InterPro: IPR018479 Monopolin is a protein complex, originally identified in Saccharomyces cerevisiae (Baker's yeast), that is required for the segregation of homologous centromeres to opposite poles of a dividing cell during meiosis I []. The orthologous complex in Schizosaccharomyces pombe (Fission yeast) is not required for meiosis I chromosome segregation, but is proposed to play a similar physiological role in clamping microtubule binding sites []. In S. cerevisiae this subunit is called LRS4, and in S. pombe it is known as Mde4 [].; PDB: 3N7N_E.
Probab=38.96 E-value=10 Score=41.48 Aligned_cols=58 Identities=29% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLK 926 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk 926 (1092)
+.|++.||.||..|+.+++.+-.|.++++ +++++ -.|.=| +|..++|-.|..|...|+
T Consensus 57 ~~E~l~LQrQi~qLt~~lQ~~~~eneklk-~~~K~-~kalle-Skl~~~kk~IdrlK~~l~ 114 (249)
T PF10422_consen 57 VDETLLLQRQITQLTSQLQSQKQENEKLK-ELQKT-QKALLE-SKLSNKKKEIDRLKLKLE 114 (249)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHH-HHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999998888774 33331 112223 456777777776664443
No 277
>PRK14154 heat shock protein GrpE; Provisional
Probab=38.89 E-value=1.5e+02 Score=32.12 Aligned_cols=56 Identities=9% Similarity=0.153 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
+|+..|+.|+..|+.+.-.+.++++.++|..+.-..-+.+-+. .+.+++++-.+.+
T Consensus 59 ~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~-e~~~~~LLpVlDn 114 (208)
T PRK14154 59 GQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGS-KQLITDLLPVADS 114 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 4667788888888888888888888887777665444433322 3445555544443
No 278
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=38.88 E-value=94 Score=35.61 Aligned_cols=34 Identities=38% Similarity=0.456 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
...|.-|+.++..|++++..++.|||.++|+|+.
T Consensus 174 ~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~f 207 (323)
T PF08537_consen 174 SDRVILLQKKIDELEERLNDLEKELEITKKDLKF 207 (323)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999999999999999998
No 279
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=38.84 E-value=6.8 Score=41.36 Aligned_cols=33 Identities=36% Similarity=0.685 Sum_probs=22.1
Q ss_pred ccccccCCCCCcCCcccc------------cccccccccceEEec
Q 001361 655 GVDQSMCSGCRIPFNFKR------------KRHNCYNCGLVYCHT 687 (1092)
Q Consensus 655 ~~d~s~C~~C~~~F~~~~------------krhhC~~CG~v~C~~ 687 (1092)
|.+.-.|..|+..|++.+ |||-|.-||..|-..
T Consensus 114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndt 158 (267)
T KOG3576|consen 114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDT 158 (267)
T ss_pred CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccch
Confidence 455556777887777554 567777777776654
No 280
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.84 E-value=12 Score=36.78 Aligned_cols=51 Identities=31% Similarity=0.694 Sum_probs=34.4
Q ss_pred ccccCCCCCc-CCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchh
Q 001361 657 DQSMCSGCRI-PFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFG 714 (1092)
Q Consensus 657 d~s~C~~C~~-~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~ 714 (1092)
+...|..|.. .|--. --|+|..|-.-||+-|.....+. .+|..-||..|-.
T Consensus 64 ddatC~IC~KTKFADG-~GH~C~YCq~r~CARCGGrv~lr------sNKv~wvcnlc~k 115 (169)
T KOG3799|consen 64 DDATCGICHKTKFADG-CGHNCSYCQTRFCARCGGRVSLR------SNKVMWVCNLCRK 115 (169)
T ss_pred cCcchhhhhhcccccc-cCcccchhhhhHHHhcCCeeeec------cCceEEeccCCcH
Confidence 4456777753 33322 25889999999999998765332 1466779999954
No 281
>PRK00846 hypothetical protein; Provisional
Probab=38.76 E-value=3.1e+02 Score=25.04 Aligned_cols=51 Identities=16% Similarity=0.052 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCc
Q 001361 878 ELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVG 935 (1092)
Q Consensus 878 ~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~ 935 (1092)
.|.++.+.+|..|--...-+++=-...++ --..|.-|+.||+-|.+||-.-
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~-------qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALAD-------ARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777777776655555553322222 4457888888888888888663
No 282
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=38.62 E-value=1.1e+02 Score=31.57 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
.+++..|+.|++.|+.+...+.++++.+++++++-..-+...+- -+.++++|..+. .|.-+.+.+
T Consensus 17 ~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~-~~~~~~ll~v~D-~l~~a~~~~ 81 (165)
T PF01025_consen 17 EEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYAL-EKFLKDLLPVLD-NLERALEAA 81 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHH-HHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHhh
Confidence 56677788888888888888888888888888765444333322 233444443332 444444443
No 283
>PF15456 Uds1: Up-regulated During Septation
Probab=38.53 E-value=1.8e+02 Score=28.85 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhh----------hhHHHHHHHHHHHHHHHHhhC
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE-ALAVAGEETAKC----------RAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e-a~~~a~ee~~k~----------~~ake~ik~l~~qlk~~~e~l 932 (1092)
.+||..|+.|...|..+|+.....|. +..|+.+ |.+++.--..+. +.+.|-.-.++..+.|++.+|
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL 97 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQEL 97 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHH
Confidence 78999999999999999999998888 5555554 444554422222 224444444444555555444
No 284
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.52 E-value=67 Score=28.52 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
..++.+++.|+..|+++.+.+..|.+.++++++.
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999998888888888888877776
No 285
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=38.17 E-value=3.6e+02 Score=26.75 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=22.2
Q ss_pred ceeEEEeCCHHHHHHHHHHHHHHH
Q 001361 99 RSLDLICKDKDEAEVWFTGLKALI 122 (1092)
Q Consensus 99 rsLDLia~~~~e~~~Wv~gL~~Li 122 (1092)
.+|-|.|++..|.+.||..|.-|-
T Consensus 96 ~~~~~lA~s~~eK~kWV~aL~~l~ 119 (122)
T cd01243 96 CSTLMLADTEEEKSKWVGALSELH 119 (122)
T ss_pred cEEEEEeCCchHHHHHHHHHHHHH
Confidence 789999999999999999998774
No 286
>PRK14162 heat shock protein GrpE; Provisional
Probab=38.05 E-value=2e+02 Score=30.83 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
.+++..|+.++..|+.+...+.+|++-++|+.+.-..-+...+. .+.+++++-.+.+
T Consensus 45 ~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~-~~~~~~LLpV~Dn 101 (194)
T PRK14162 45 EKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYES-QSLAKDVLPAMDN 101 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 45677777777777777777778888777777665444444332 3455555544443
No 287
>PLN02678 seryl-tRNA synthetase
Probab=37.99 E-value=1.3e+02 Score=36.42 Aligned_cols=77 Identities=13% Similarity=0.102 Sum_probs=48.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCc
Q 001361 859 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLK---EALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVG 935 (1092)
Q Consensus 859 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~---ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~ 935 (1092)
.|.+-+.-+|..+|+.+++.|+.+......+|...+++-+ +..+-+.+=.++.++..+-++.|..+|.++.-+||-=
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi 111 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNL 111 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4555555677777777777777777777777755332222 2222222223455667778888888999888877743
No 288
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=37.57 E-value=4e+02 Score=29.68 Aligned_cols=151 Identities=13% Similarity=0.056 Sum_probs=0.0
Q ss_pred EEeCCCeEEEEEeCCcEEEeCCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCC
Q 001361 362 VACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTF 441 (1092)
Q Consensus 362 Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~ 441 (1092)
|+-...+.++=...|+|+.. ...-|-.+.....-.-+.+..--.+.+|-.++.-..|.+.--. |.||.|-+|.+
T Consensus 18 ~sp~~~~l~agn~~G~iav~-----sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~ 91 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVL-----SLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEE 91 (325)
T ss_pred hCCcceEEEEecCCCeEEEE-----EehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhh
Q ss_pred cc-cCCCCCcccccceeeecCCCCeEEEEecC-CceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceee
Q 001361 442 GV-LGHGDRISVSTPREVDSLKGLRTVRAACG-VWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVP 519 (1092)
Q Consensus 442 GQ-LG~g~~~~~~~P~~V~~l~~~~I~~VacG-~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P 519 (1092)
-. ++....-.+..|..+..+.--.|....-- ...++++.- .|+.+|+|
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-----------GD~~~y~~------------------- 141 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-----------GDGVIYQV------------------- 141 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-----------CCeEEEEE-------------------
Q ss_pred EEecccCCCCeEEEEeeCc---EEEEE----------ecCCcEEEE
Q 001361 520 TCVAALVEPNFCQVSCGHS---LTVAL----------TTTGHVYTM 552 (1092)
Q Consensus 520 ~~V~~l~~~~I~~Ia~G~~---htlaL----------t~dG~Vy~w 552 (1092)
.+.+-+|....-|+. |++++ .+||.|-.|
T Consensus 142 ----dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvW 183 (325)
T KOG0649|consen 142 ----DLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVW 183 (325)
T ss_pred ----EecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEE
No 289
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=37.56 E-value=1.7e+02 Score=35.04 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
+|-..+++....+++++.+++.++.++++++++
T Consensus 368 ~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 368 QESSDLEAEKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556677777888888888888777764
No 290
>PRK14139 heat shock protein GrpE; Provisional
Probab=37.51 E-value=1.6e+02 Score=31.45 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 922 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~ 922 (1092)
.+++..|+.|+..|+.++-.+.+|++-++|.++.-..-+...+. -+.++++|-.+.
T Consensus 38 ~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~-~~~~~~LLpv~D 93 (185)
T PRK14139 38 EAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAI-ESFAESLLPVKD 93 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHh
Confidence 46788899999999999999999999988888765444433332 234444444333
No 291
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=37.14 E-value=2.4e+02 Score=32.09 Aligned_cols=65 Identities=17% Similarity=0.306 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQL---------------------KEALAVAGEETAKCRAAKDVIKSLTAQ 924 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~---------------------~ea~~~a~ee~~k~~~ake~ik~l~~q 924 (1092)
+.++..|.+|+..|+.+......+|+++..++ .+.-..+.+-+++.+.-.+-|+.+-..
T Consensus 157 ~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~e 236 (294)
T COG1340 157 NEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNE 236 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444555555555544444444444444333 344444445555555555666666665
Q ss_pred HHHHHh
Q 001361 925 LKDMAE 930 (1092)
Q Consensus 925 lk~~~e 930 (1092)
|+++-.
T Consensus 237 lre~~k 242 (294)
T COG1340 237 LRELEK 242 (294)
T ss_pred HHHHHH
Confidence 555543
No 292
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=37.12 E-value=3e+02 Score=28.43 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEE 907 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee 907 (1092)
.++-.++|.+...|..+ .+.+|+.++++.++.+.-|.++
T Consensus 44 Ld~Ae~~r~eA~~l~~e---~e~~L~~Ar~EA~~Ii~~A~~~ 82 (154)
T PRK06568 44 VLKAEKLKEDAALLFEQ---TNAQIKKLETLRSQMIEESNEV 82 (154)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333 3333444444444433333333
No 293
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=37.08 E-value=2.3e+02 Score=32.74 Aligned_cols=34 Identities=35% Similarity=0.385 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
.+|+.+|..|.+.|.++++.++.|-+++.+++++
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666555555555544
No 294
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=37.04 E-value=29 Score=42.03 Aligned_cols=33 Identities=9% Similarity=0.281 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
.+|+..+| |++.|++|++++++|++.++++|++
T Consensus 24 ~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 24 ADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred hhhhHHHH-HHHHHHHHHHHHHHhhcccccccch
Confidence 45555566 6777777777776666666665544
No 295
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=36.98 E-value=1e+02 Score=34.92 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHH
Q 001361 894 TRQLKEALAVAGEETAKCRAAKD 916 (1092)
Q Consensus 894 ~~~~~ea~~~a~ee~~k~~~ake 916 (1092)
+++.+++.+-|.+|++|.|++-|
T Consensus 146 kk~aE~a~aka~aEA~k~Ka~ae 168 (387)
T COG3064 146 KKKAEAAKAKAAAEAAKLKAAAE 168 (387)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHH
Confidence 44555566777778877655433
No 296
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=36.84 E-value=1.3e+02 Score=39.14 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKS 883 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~ 883 (1092)
+|+.+++.+++.++++.
T Consensus 537 ~~~~~~~~e~~~~~~~l 553 (782)
T PRK00409 537 EEAEALLKEAEKLKEEL 553 (782)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444443
No 297
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=36.47 E-value=1.7e+02 Score=37.86 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEA 900 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea 900 (1092)
++|+..|+.+-+.|.++.++.|..|..++.||.-|
T Consensus 409 ~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 409 NSELEELRRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777788888888888888888888888888744
No 298
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=36.23 E-value=38 Score=44.35 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=42.6
Q ss_pred ccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhhcc
Q 001361 651 KWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKA 719 (1092)
Q Consensus 651 kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~~~ 719 (1092)
-|+.+.-...|..|...|.++.++|||+ |.++= . ....+..|+|..|+..++..
T Consensus 650 Vw~aDg~aPng~la~t~~~~~~e~~hsr--~~ls~----------~---~~s~~~~~~~n~t~s~~rn~ 703 (1287)
T KOG1841|consen 650 VWFADGIAPNGELAETRFTFTGERHHSR--GKLSL----------L---YSSRKEARPCNITHSVLRNV 703 (1287)
T ss_pred eeccCCcCCCceecccceeeeccccccc--ccccc----------c---ccccccCCCCcccCccchhh
Confidence 4888888899999999999999999999 76661 1 11245678999999887763
No 299
>PF09074 Mer2: Mer2; InterPro: IPR015159 Meiotic recombination 2 protein (Mer2) also known as Rec107, forms part of a complex that is required for meiotic double strand DNA break formation. Mer2 increases in abundance and is phosphorylated during the prophase phase of cell division []. MER2 is not required for mitosis and mitotic DNA repair mechanisms and is a component of the MER2-MEI4-REC114 complex which seems to be required for meiotic double-strand break (DSB) formation []. ; GO: 0007131 reciprocal meiotic recombination, 0000794 condensed nuclear chromosome
Probab=36.19 E-value=3.6e+02 Score=28.78 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=15.2
Q ss_pred hhhhhhhHHHHHHHHHHHHH
Q 001361 907 ETAKCRAAKDVIKSLTAQLK 926 (1092)
Q Consensus 907 e~~k~~~ake~ik~l~~qlk 926 (1092)
|+++-+-.|+.||.|.+||+
T Consensus 75 ~~s~~~~ik~~i~~l~~~i~ 94 (190)
T PF09074_consen 75 EKSSNEDIKKLIKSLGNQIN 94 (190)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 36777788899999888544
No 300
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=36.11 E-value=1.7e+02 Score=29.27 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEM 931 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~ 931 (1092)
.+||...=.|+..|.+..-.++.|...-+..+. .+=+.+.++.|+-|++|+....+--|-
T Consensus 17 ~eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~------e~Yapq~~~lk~EI~~L~k~vq~yCea 76 (170)
T COG4396 17 KEEVTAFIRQIGDLQREVKRLETEMNDKKAAIE------EEYAPQAAPLKAEIMSLTKRVQAYCEA 76 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHhHHH------HHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 667776666777777766666666655333333 377889999999999999877766543
No 301
>PRK14140 heat shock protein GrpE; Provisional
Probab=35.81 E-value=2e+02 Score=30.78 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 922 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~ 922 (1092)
.+++.+|+.++..|+.+.-..-++++-++|..+.-..-+. +.+.-+.+++++-.|.
T Consensus 43 ~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~-~~a~~~~~~~LLpvlD 98 (191)
T PRK14140 43 QAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAE-KYRAQSLASDLLPALD 98 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3455666667777777776677777777776665444332 2333345555555444
No 302
>PHA02790 Kelch-like protein; Provisional
Probab=35.75 E-value=2.2e+02 Score=34.72 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=12.0
Q ss_pred EEEEEeCCcEEEeCCc
Q 001361 369 TCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 369 s~aLT~dG~Vy~wG~n 384 (1092)
..++.-+|+||+.|..
T Consensus 356 ~~~~~~~g~IYviGG~ 371 (480)
T PHA02790 356 PAVASINNVIYVIGGH 371 (480)
T ss_pred cEEEEECCEEEEecCc
Confidence 3445668999999965
No 303
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=35.53 E-value=1.4e+02 Score=27.88 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 875 QVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
+|..|..+...+..|++.++++++
T Consensus 50 ~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 50 KVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 304
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=35.52 E-value=2.2e+02 Score=25.20 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001361 875 QVEELTRKSQLQEIELERTT 894 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~ 894 (1092)
.+..|+-+.-.|+.-|+.+.
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln 24 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELN 24 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 305
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=35.47 E-value=13 Score=42.20 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=11.5
Q ss_pred eeeCccchhhhhccc
Q 001361 706 YRVCDNCFGKLTKAT 720 (1092)
Q Consensus 706 ~RVC~~C~~~l~~~~ 720 (1092)
+-+|+.|..-++-..
T Consensus 238 ve~C~~C~~YlK~vd 252 (290)
T PF04216_consen 238 VEVCESCGSYLKTVD 252 (290)
T ss_dssp EEEETTTTEEEEEEE
T ss_pred EEECCcccchHHHHh
Confidence 448999988777665
No 306
>PRK10698 phage shock protein PspA; Provisional
Probab=35.40 E-value=1.9e+02 Score=31.61 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001361 872 LRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 910 (1092)
Q Consensus 872 l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k 910 (1092)
.-++-..|+++.+..+.++++..++.+-|+.--.|+.||
T Consensus 50 ~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr 88 (222)
T PRK10698 50 ALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLAR 88 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 333567889999999999999999999998855555554
No 307
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=35.32 E-value=76 Score=31.15 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 001361 870 IKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSL 921 (1092)
Q Consensus 870 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l 921 (1092)
.+|.+|.+.|.++.+.+...+..+...+.| .+.++++|+.|
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e-----------~~~~~~~L~~l 42 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAE-----------LETAIETLEDL 42 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhc
Confidence 356666677777777777777776666666 45567777555
No 308
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=35.20 E-value=3.7e+02 Score=27.75 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=32.5
Q ss_pred hhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhhh
Q 001361 859 VDDAKRT---SEEVIKLRAQVEELTRKSQLQEIEL-----ERTTRQLKEALAVAGEETAKCRA 913 (1092)
Q Consensus 859 ~~~l~~~---~qev~~l~~qv~~L~~~~~~~~~ei-----~~~~~~~~ea~~~a~ee~~k~~~ 913 (1092)
.++|.+. .+|..+|.++.+..-++.+..-.+| +..++..+++..-|.+|+.+.++
T Consensus 41 ~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~ 103 (154)
T PRK06568 41 QEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKS 103 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 8888888886665555554444333 23344555667777777765443
No 309
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=35.16 E-value=8.9e+02 Score=29.31 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=45.9
Q ss_pred EEEEEec-CceEEE-EEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEE--EeCCcEEEeC
Q 001361 307 VQNIACG-GRHAAL-VTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAV--TLSGDMYTWG 382 (1092)
Q Consensus 307 I~~Ia~G-~~hs~~-Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aL--T~dG~Vy~wG 382 (1092)
|..++.. ..|.++ =|..|++|.|=-+++--|-.- ..- -..|..+....+-..++ ..||.|++|-
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aH-----------YQ~ITcL~fs~dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAH-----------YQSITCLKFSDDGSHIITGSKDGAVLVWL 151 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-Hhh-----------ccceeEEEEeCCCcEEEecCCCccEEEEE
Confidence 4555544 233333 347899999986654332110 000 01344444444434444 4688899985
Q ss_pred CccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCCCe
Q 001361 383 GSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWH 423 (1092)
Q Consensus 383 ~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~H 423 (1092)
--+ |-..+......|..+.. -....|.++.+|..-
T Consensus 152 l~~-----lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg 186 (476)
T KOG0646|consen 152 LTD-----LVSADNDHSVKPLHIFS-DHTLSITDLQIGSGG 186 (476)
T ss_pred EEe-----ecccccCCCccceeeec-cCcceeEEEEecCCC
Confidence 331 10111111222332221 234568888777653
No 310
>PRK14011 prefoldin subunit alpha; Provisional
Probab=34.98 E-value=93 Score=31.75 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
+||+.++..+.+.|.++.+.+..+|+.++.-..+
T Consensus 2 ~~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e 35 (144)
T PRK14011 2 NEELQNQFMALEVYNQQVQKLQEELSSIDMMKME 35 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888899988899999888888888876554444
No 311
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=34.79 E-value=1.6e+02 Score=37.89 Aligned_cols=11 Identities=36% Similarity=1.020 Sum_probs=8.2
Q ss_pred CCcEEEEcCCC
Q 001361 261 LGDVFIWGECT 271 (1092)
Q Consensus 261 ~G~Vy~WG~n~ 271 (1092)
++++|+|=.+.
T Consensus 41 d~~L~vWd~~e 51 (717)
T PF10168_consen 41 DGDLFVWDSSE 51 (717)
T ss_pred CCEEEEEECCC
Confidence 47888886665
No 312
>PRK04325 hypothetical protein; Provisional
Probab=34.69 E-value=1.8e+02 Score=26.24 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhC
Q 001361 916 DVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 916 e~ik~l~~qlk~~~e~l 932 (1092)
.-++.|+.+|+++....
T Consensus 44 ~ql~~L~~rl~~~~~~~ 60 (74)
T PRK04325 44 AQLRLLYQQMRDANPDA 60 (74)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 34566666777765443
No 313
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=34.60 E-value=1.6e+02 Score=31.95 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=33.9
Q ss_pred Ccchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhh-----hhhhHHHHHHHHHHHHHH
Q 001361 855 PKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE-ALAVAGEETA-----KCRAAKDVIKSLTAQLKD 927 (1092)
Q Consensus 855 ~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e-a~~~a~ee~~-----k~~~ake~ik~l~~qlk~ 927 (1092)
.+..+|++-.- ..+...+..+++.|+++.+.++.+|+........ ++..|..++. ..+.++++||-+.++=+.
T Consensus 24 ~~eEVdeFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~a~~ea~~il~~a~~~a~~ 103 (212)
T COG3599 24 DEEEVDEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDILKRASAQAQR 103 (212)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333 3344444444555555555555555444332221 2222322211 234567788888776554
Q ss_pred H
Q 001361 928 M 928 (1092)
Q Consensus 928 ~ 928 (1092)
|
T Consensus 104 v 104 (212)
T COG3599 104 V 104 (212)
T ss_pred H
Confidence 4
No 314
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.53 E-value=3.4e+02 Score=32.55 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=24.3
Q ss_pred hhhhhhHHHHHHHHH-------HHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 001361 860 DDAKRTSEEVIKLRA-------QVEELTRK---SQLQEIELERTTRQLKEALA 902 (1092)
Q Consensus 860 ~~l~~~~qev~~l~~-------qv~~L~~~---~~~~~~ei~~~~~~~~ea~~ 902 (1092)
+++.+-++|+..|.+ ....|+++ .+.+..|||.+.|--++++.
T Consensus 234 eel~eq~eeneel~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e 286 (521)
T KOG1937|consen 234 EELTEQNEENEELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIE 286 (521)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 677776555555555 33455544 45666777765554444443
No 315
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=34.31 E-value=1.5e+02 Score=36.97 Aligned_cols=13 Identities=38% Similarity=0.386 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 001361 914 AKDVIKSLTAQLK 926 (1092)
Q Consensus 914 ake~ik~l~~qlk 926 (1092)
+++.++...++||
T Consensus 245 ~~~~~~~~~~~lk 257 (555)
T TIGR03545 245 DKKQLKADLAELK 257 (555)
T ss_pred hHHHHHHHHHHHH
Confidence 4444444444333
No 316
>PRK14151 heat shock protein GrpE; Provisional
Probab=34.30 E-value=1.9e+02 Score=30.48 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 922 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~ 922 (1092)
.+++..|+.|+..|+.+.-.+.+|++.++|+.+.-...+.+-+. .+.+++++-.+.
T Consensus 26 ~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~-~~~~~~LLpv~D 81 (176)
T PRK14151 26 TARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFAL-EKFAGDLLPVVD 81 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHh
Confidence 45677788888888888888888888888877764444433332 244444444443
No 317
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=34.23 E-value=2e+02 Score=34.12 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH---HHHHHHhhhhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQ-----------------EIELERTTRQLKEA---LAVAGEETAKCR 912 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~-----------------~~ei~~~~~~~~ea---~~~a~ee~~k~~ 912 (1092)
.+|+.+||.+++.-++++|.. |.|+|-+.+|.+.| +..|.|+++|.|
T Consensus 308 rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklk 374 (575)
T KOG4403|consen 308 RKELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLK 374 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 368888888776555554433 45555555554433 567788888765
No 318
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.22 E-value=1.2e+02 Score=36.11 Aligned_cols=11 Identities=36% Similarity=0.495 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 001361 916 DVIKSLTAQLK 926 (1092)
Q Consensus 916 e~ik~l~~qlk 926 (1092)
.-|..+..+|+
T Consensus 94 ~~I~~~~~~l~ 104 (420)
T COG4942 94 KQIADLNARLN 104 (420)
T ss_pred hhHHHHHHHHH
Confidence 33444444443
No 319
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=33.75 E-value=1.4e+02 Score=37.80 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCcc
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVGA 936 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~~ 936 (1092)
...+.+++|+..|..+|..+|.|+|++ ++|++-| |.-| |.++--|..++++|.++..-|....
T Consensus 99 ddlk~~~sQiriLQn~c~~lE~ekq~l----Q~ti~~~--q~d~-ke~etelE~~~srlh~le~eLsAk~ 161 (1265)
T KOG0976|consen 99 DDLKHHESQIRILQNKCLRLEMEKQKL----QDTIQGA--QDDK-KENEIEIENLNSRLHKLEDELSAKA 161 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH--HHHH-HHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 345567779999999999988887765 4444333 3332 4566677788888877777776654
No 320
>smart00338 BRLZ basic region leucin zipper.
Probab=33.73 E-value=73 Score=27.55 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTR 895 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~ 895 (1092)
|..|..+...|..+.+.+..|++.++.
T Consensus 35 ~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 35 VEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444433
No 321
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.65 E-value=1.6e+02 Score=29.57 Aligned_cols=14 Identities=29% Similarity=0.195 Sum_probs=10.9
Q ss_pred HHHHHHHhhCCCcc
Q 001361 923 AQLKDMAEMLPVGA 936 (1092)
Q Consensus 923 ~qlk~~~e~lp~~~ 936 (1092)
+|-..|.++|||+.
T Consensus 110 ~~~~~~~~~~~~~~ 123 (134)
T cd04779 110 AQRMKMTKELSQQV 123 (134)
T ss_pred HHHHHHHHhcCHHh
Confidence 46678899999874
No 322
>PRK14163 heat shock protein GrpE; Provisional
Probab=33.63 E-value=3.8e+02 Score=29.26 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL 901 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~ 901 (1092)
.+++..|+.++..|+.+.-.+.+|.+.++|+.+.-.
T Consensus 46 ~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~ 81 (214)
T PRK14163 46 TAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDR 81 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777888887777777777777777666433
No 323
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=33.54 E-value=2e+02 Score=31.93 Aligned_cols=51 Identities=27% Similarity=0.374 Sum_probs=30.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001361 860 DDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 910 (1092)
Q Consensus 860 ~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k 910 (1092)
++|..-..|+.+|+.+.+.|..+...++.++-..++.++++++.+.++---
T Consensus 110 ~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~ 160 (239)
T COG1579 110 DELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQE 160 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444556666666666666666666666666666666666666654433
No 324
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=33.53 E-value=3e+02 Score=28.22 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTRQ 896 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~~ 896 (1092)
+..|+..+.+|+++.+.+..+|+..=|+
T Consensus 17 l~~l~~~Ir~lq~~~e~k~~~l~e~l~~ 44 (175)
T COG4741 17 LYLLRAYIRSLQGKVESKARELEETLQK 44 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777888777777666554333
No 325
>PRK14148 heat shock protein GrpE; Provisional
Probab=33.50 E-value=2.4e+02 Score=30.25 Aligned_cols=57 Identities=11% Similarity=0.216 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
.+++..|++++..|+.+.-..-+|++-++|+.+.-...+.+-+ ..+.+++++-.+.+
T Consensus 46 ~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a-~~~~~~~LLpV~Dn 102 (195)
T PRK14148 46 KDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFG-IEKFAKELLPVIDS 102 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhH
Confidence 5666667777777777777777777777776665444443332 23455555544443
No 326
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=33.44 E-value=3.3e+02 Score=27.90 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 910 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k 910 (1092)
.+|..+++.|++.+..+. +.+|+..+++.++-+.-|.+|+.+
T Consensus 62 l~~Ae~~~~ea~~~~~e~---e~~L~~A~~ea~~ii~~A~~~a~~ 103 (156)
T CHL00118 62 LTKASEILAKANELTKQY---EQELSKARKEAQLEITQSQKEAKE 103 (156)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666655555553 344455555555555555555443
No 327
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=33.34 E-value=2.3e+02 Score=32.81 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001361 876 VEELTRKSQLQEIELERTTRQL 897 (1092)
Q Consensus 876 v~~L~~~~~~~~~ei~~~~~~~ 897 (1092)
++.|++++..++.+|+..++++
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l 232 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKEL 232 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333
No 328
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.29 E-value=2.3e+02 Score=26.77 Aligned_cols=60 Identities=25% Similarity=0.313 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQE---------IELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKD 927 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~---------~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~ 927 (1092)
.+|+.+|+.+++.|........ .||+.+.++++.|+..++. .|-+.-.+-|+.|..+.+.
T Consensus 18 ~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~--rK~~~l~~~i~~l~~ke~~ 86 (100)
T PF01486_consen 18 QQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRS--RKDQLLMEQIEELKKKERE 86 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 7899999999999888765554 6899999999998887764 4555556666666554443
No 329
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=33.24 E-value=3.5e+02 Score=28.93 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
-.|+.+|+..|+....-...+-.||..++++++
T Consensus 21 ~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 21 ADENAKLQRSVETAEEGNAQLAEEITDLRKQLK 53 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999888777766667777766666655
No 330
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=33.13 E-value=3.6e+02 Score=24.22 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=27.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 860 DDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 860 ~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
+-|++.-+.|.+|+.+-+.|..+--.+..-|-++++++++
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e 44 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKE 44 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444446667777777777777777777777777777766
No 331
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.12 E-value=64 Score=38.96 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCC
Q 001361 877 EELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLP 933 (1092)
Q Consensus 877 ~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp 933 (1092)
+.|++|++.+..|++.++++.++ ..+|.+.-.+-|+.|.+|++.+..++.
T Consensus 79 sELEKqLaaLrqElq~~saq~~d-------le~KIkeLEaE~~~Lk~Ql~a~~~~~~ 128 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGD-------DQRRIEKLGQDNAALAEQVKALGANPV 128 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh-------HHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 33444444444444433333332 344555677888899999877666543
No 332
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=32.94 E-value=65 Score=24.10 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.5
Q ss_pred cEEEEEeCC-CeEEEEEcCCcEEEe
Q 001361 413 HVSSVSCGP-WHTAVVTSAGQLFTF 436 (1092)
Q Consensus 413 ~I~~IscG~-~Ht~aLt~dG~Vy~w 436 (1092)
.+++|++|. ....+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 699999999 889999999999864
No 333
>PRK04406 hypothetical protein; Provisional
Probab=32.93 E-value=2.2e+02 Score=25.76 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 872 LRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 872 l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
+.+.+..|+.+.-.|+.-|+.+.+-|-
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~ 35 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALS 35 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544443
No 334
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=32.84 E-value=2e+02 Score=30.71 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH---HHHHHHhhCCCc
Q 001361 875 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA---QLKDMAEMLPVG 935 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~---qlk~~~e~lp~~ 935 (1092)
+...|+.+.++.+.++.....+++||-.+|-+=-.| ..||++.|+- +|..-.||.-.+
T Consensus 47 ~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK---~eEVarkL~iiE~dLE~~eeraE~~ 107 (205)
T KOG1003|consen 47 GMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRK---YEEVARKLVIIEGELERAEERAEAA 107 (205)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456777788888888888899999988887555456 6788888876 666666665554
No 335
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=32.79 E-value=1.6e+02 Score=31.31 Aligned_cols=61 Identities=26% Similarity=0.309 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERT----------------TRQLKEALAVAGEETAKCRAAKDVIKSLTAQLK 926 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~----------------~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk 926 (1092)
.+-|.+|++.|...+++|..++..+... ...+++|...-.||=-||..--+|.--|-.||.
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLE 91 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLE 91 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999988432 356778888888888888874455444444443
No 336
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=32.30 E-value=1.4e+02 Score=33.42 Aligned_cols=58 Identities=10% Similarity=0.244 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 875 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
++..|.+..+.+..+++....+.+..-.-+.+=..+.+.....|+.|...+++|.+++
T Consensus 53 ~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~ 110 (264)
T PF06008_consen 53 ELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQV 110 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333333222222222333445555555555555554443
No 337
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=32.27 E-value=3.3e+02 Score=28.73 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKS 883 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~ 883 (1092)
.++..+++.|++.+..+.
T Consensus 71 l~~Ae~~~~eA~~~~~ey 88 (181)
T PRK13454 71 LAAAEELKQKAVEAEKAY 88 (181)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555566666655555553
No 338
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=32.24 E-value=1.8e+02 Score=36.49 Aligned_cols=9 Identities=44% Similarity=0.586 Sum_probs=6.6
Q ss_pred eeeeccceE
Q 001361 1022 VEQDETGVY 1030 (1092)
Q Consensus 1022 ~~~~epgv~ 1030 (1092)
+|++|||+|
T Consensus 546 lE~vePG~~ 554 (569)
T PRK04778 546 LEKVEPGVT 554 (569)
T ss_pred HHhhCCcHH
Confidence 677777776
No 339
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=32.24 E-value=1.4e+02 Score=30.46 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 922 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~ 922 (1092)
.+|+.+|.+|+.-|.++.+.+..+|..+..-+-| +..+++-|+.|.
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e-----------~~~~~~tl~~lk 50 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISE-----------LQTAIETLENLK 50 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 4677777777777777777777777766555544 555666666654
No 340
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=32.12 E-value=1.7e+02 Score=34.04 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhhCC
Q 001361 914 AKDVIKSLTAQLKDMAEMLP 933 (1092)
Q Consensus 914 ake~ik~l~~qlk~~~e~lp 933 (1092)
.++.|+.|..++|+....+-
T Consensus 66 ~~~~i~~L~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 66 ERELIEKLEEDIKERRCQLF 85 (330)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 34445555555555443333
No 341
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=32.04 E-value=2.4e+02 Score=33.31 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 888 IELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 888 ~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
.+++.+-++..++-.--.+--.|.+.|-+-|..+|.+|.++.|+|=.
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~ 312 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQ 312 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555667777888888888888888877743
No 342
>PRK14160 heat shock protein GrpE; Provisional
Probab=32.04 E-value=2.3e+02 Score=30.80 Aligned_cols=63 Identities=22% Similarity=0.211 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 870 IKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 870 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
..|+.++..|+++.+.++.+++.++.++.- +.|-=|--|.+++||.-+....-+..++..|-|
T Consensus 57 ~~l~~e~~~l~~~l~~l~~e~~elkd~~lR--~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLp 119 (211)
T PRK14160 57 EELKDENNKLKEENKKLENELEALKDRLLR--TVAEYDNYRKRTAKEKEGIYSDACEDVLKELLP 119 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555556666655555555555444422 234445556666666655555555555444443
No 343
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.00 E-value=2.9e+02 Score=23.78 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 930 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e 930 (1092)
.+++..++.-+..|+.+...---.||-..-=++. .|...|+|.|+.++.+++++++
T Consensus 3 ~~~~~~~~~~~~~lR~~RHD~~NhLqvI~gllql---------g~~~~a~eYi~~~~~~~~~~s~ 58 (62)
T PF14689_consen 3 KQQLEELEELIDSLRAQRHDFLNHLQVIYGLLQL---------GKYEEAKEYIKELSKDLQQESE 58 (62)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------T-HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHHH
Confidence 3566666677777777766666666665554443 4455599999999999998854
No 344
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=31.99 E-value=1e+02 Score=27.92 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELER 892 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~ 892 (1092)
+|.+.|+.++.+|++..+.....|..
T Consensus 43 keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 43 KENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333333
No 345
>PRK07857 hypothetical protein; Provisional
Probab=31.83 E-value=2.3e+02 Score=27.43 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q 001361 914 AKDVIKSLTAQL 925 (1092)
Q Consensus 914 ake~ik~l~~ql 925 (1092)
-++||+.+..+|
T Consensus 75 E~eVl~rl~~~l 86 (106)
T PRK07857 75 EMKVIERYREEL 86 (106)
T ss_pred HHHHHHHHHHHh
Confidence 356666666554
No 346
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=31.73 E-value=2.2e+02 Score=33.63 Aligned_cols=64 Identities=9% Similarity=0.125 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAG-EETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~-ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
+..++.++..++.+.+....+++.++.++.++..-.. +...+...+++-|+.+.++|..+.++|
T Consensus 205 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 205 RAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443322222 222344555566666666665554444
No 347
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=31.64 E-value=1.2e+02 Score=22.66 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTT 894 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~ 894 (1092)
=.+|-++.+-|+++.|++...|+.++
T Consensus 3 EqkL~sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 3 EQKLISEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777888888888888888887764
No 348
>PRK14159 heat shock protein GrpE; Provisional
Probab=31.62 E-value=2.2e+02 Score=30.02 Aligned_cols=56 Identities=23% Similarity=0.226 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 922 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~ 922 (1092)
-+|+..|+.++..|+.+.-.+.++++-++|..+.-...+.+.+. -+.++++|-.+.
T Consensus 29 ~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~-~~~~~~LLpV~D 84 (176)
T PRK14159 29 DVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYAN-ESFAKDLLDVLD 84 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHh
Confidence 56677888888888888888888888888777764444433332 244444444443
No 349
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=31.50 E-value=2.8e+02 Score=27.95 Aligned_cols=59 Identities=14% Similarity=0.221 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRK--SQLQEIELERTTRQLKEALAVA-GEETAKCRAAKDVIKSLTAQ 924 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~--~~~~~~ei~~~~~~~~ea~~~a-~ee~~k~~~ake~ik~l~~q 924 (1092)
+.|+..++..+..|.+. ++.....++++..+|+.|-... .+...+..++..+|..+-.+
T Consensus 73 LDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~r 134 (139)
T PF13935_consen 73 LDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAKR 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45555566666666655 5555566666666666655544 34444444555555554443
No 350
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=31.40 E-value=1.8e+02 Score=30.25 Aligned_cols=51 Identities=31% Similarity=0.346 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH---HhhhhhhhHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQE----IELERTTRQLKEALAVAG---EETAKCRAAKDVI 918 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~----~ei~~~~~~~~ea~~~a~---ee~~k~~~ake~i 918 (1092)
++||.|--.+ -|++.+.+|+ ...++....+-||-.+|. .|+.||.++.|--
T Consensus 79 ~eEmeK~~~~--LL~EELkLqe~~A~e~~~~~~~~lleAkk~asqYQkEAeKCnsgmeTC 136 (176)
T PF06364_consen 79 SEEMEKNFVD--LLSEELKLQEAVANENQRRADMALLEAKKMASQYQKEAEKCNSGMETC 136 (176)
T ss_pred hHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 5666655443 2344444444 444555555556666665 7999998887754
No 351
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=31.06 E-value=2.3e+02 Score=36.32 Aligned_cols=62 Identities=21% Similarity=0.350 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEI-------ELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~-------ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
+|..++++++..|+++...++. +|..+++.++-+..+|+|=.++..+|-+-+-++..+|--|
T Consensus 391 ~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqL 459 (717)
T PF09730_consen 391 QEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQL 459 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444 8888888899999999999999999999999988877655
No 352
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.04 E-value=2.7e+02 Score=33.15 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hhhhhHHHHHHHHHHHHHHHHh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEET--------------AKCRAAKDVIKSLTAQLKDMAE 930 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~--------------~k~~~ake~ik~l~~qlk~~~e 930 (1092)
-.|+..||+.+..|+-.|+.|+.+.|++..+++-+-..-.+|- ...+|..|+|..|-.+|.-+-.
T Consensus 310 eeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~ 388 (502)
T KOG0982|consen 310 EEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRR 388 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5678888889999999999999999999888887665555543 2346778888888777665533
No 353
>PRK04325 hypothetical protein; Provisional
Probab=31.03 E-value=4e+02 Score=24.00 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 872 LRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 872 l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
+...+..|+.+.-.||.-|+.+.+-|-+ --..|..|+.||+-|.+||-.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~--------------Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVAR--------------QQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666555544 233467788888888888844
No 354
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.91 E-value=73 Score=33.84 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQ 884 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~ 884 (1092)
+.|+.+++++++.++.+.+
T Consensus 124 i~~l~~~~~~~~~~~kq~~ 142 (192)
T PF05529_consen 124 IKELIKLEEKLEALKKQAE 142 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666665555555544
No 355
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=30.85 E-value=3.7e+02 Score=28.92 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhhhhHHHHHHHHHHHHHHHHhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEET--------AKCRAAKDVIKSLTAQLKDMAEM 931 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~--------~k~~~ake~ik~l~~qlk~~~e~ 931 (1092)
-+|+..|+-+.+.|.++++.++.|-..+.++.+.++.=+-..+ .|.++..+.+..-.+||.++-..
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~ 172 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAA 172 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888899999999999999998888888776666555 46667777777777788877543
No 356
>PRK14144 heat shock protein GrpE; Provisional
Probab=30.85 E-value=2.2e+02 Score=30.62 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
.+++..|++|+..|+.++-...++++.++|..+.-...|.+.+. -+.++++|-.+.+
T Consensus 51 ~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~-~~~~~~LLpV~Dn 107 (199)
T PRK14144 51 EEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGV-EKLISALLPVVDS 107 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 45677788888888888888888888888887766555555444 2455555554443
No 357
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.82 E-value=5.8e+02 Score=26.97 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=15.7
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 001361 900 ALAVAGEETAKCRAAKDVIKSLTAQLKDMA 929 (1092)
Q Consensus 900 a~~~a~ee~~k~~~ake~ik~l~~qlk~~~ 929 (1092)
+++--.||..| +..-+.-|.-|+++|-
T Consensus 186 ~lLAk~EEi~k---sm~pv~~La~qir~ir 212 (222)
T KOG4514|consen 186 QLLAKAEEITK---SMKPVEQLAQQIRQIR 212 (222)
T ss_pred HHHHHHHHHHH---HHhhHHHHHHHHHHHH
Confidence 33334466665 4445566777777774
No 358
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=30.78 E-value=1.6e+02 Score=28.58 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
.+||..|+.+|..|-++=..+..|.+.+++.+.+
T Consensus 21 ~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 21 LEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444455555555554444
No 359
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=30.69 E-value=1.4e+02 Score=36.09 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 001361 912 RAAKDVIKSLTAQLKDMAE 930 (1092)
Q Consensus 912 ~~ake~ik~l~~qlk~~~e 930 (1092)
+.+.|.|+....||.-|..
T Consensus 399 ~~~~e~i~~kE~eLe~L~~ 417 (492)
T PF06273_consen 399 ESLREEISQKEKELEKLTR 417 (492)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 5677777777777665543
No 360
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=30.65 E-value=3.9e+02 Score=23.78 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 871 KLRAQVEELTRKSQLQEIELERTTR 895 (1092)
Q Consensus 871 ~l~~qv~~L~~~~~~~~~ei~~~~~ 895 (1092)
+|.++|.+|..+.+....+++...-
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~ 26 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEI 26 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665543
No 361
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=30.64 E-value=2.1e+02 Score=25.41 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhh
Q 001361 918 IKSLTAQLKDMAEM 931 (1092)
Q Consensus 918 ik~l~~qlk~~~e~ 931 (1092)
||.+..||++|.+.
T Consensus 36 i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 36 IKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777777653
No 362
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=30.63 E-value=3.3e+02 Score=24.96 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=29.7
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQV-------EELTRKSQLQEIELERTTRQLKEALAVAGEET---AKCRAAKDVIKSLTAQLKDMA 929 (1092)
Q Consensus 866 ~qev~~l~~qv-------~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~---~k~~~ake~ik~l~~qlk~~~ 929 (1092)
++++.+|+.++ ..++++.+.+-.+|.+.-++++..+.-..++. +......-+++-+.+|+..|+
T Consensus 23 ~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~~ri~~nq~~~L~ 96 (103)
T PF00804_consen 23 LNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNEVRIRKNQVQALS 96 (103)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHHHHHHHH
Confidence 55555555522 24666666666666655555554444433331 222333334444444444443
No 363
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=30.54 E-value=87 Score=23.41 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.9
Q ss_pred CcEEEEEeCC-CeEEEEEeCCcEEEe
Q 001361 357 INVELVACGE-HHTCAVTLSGDMYTW 381 (1092)
Q Consensus 357 ~~I~~Ia~G~-~hs~aLT~dG~Vy~w 381 (1092)
..+++|++|. ....+|+.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3689999999 888999999999964
No 364
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=30.51 E-value=1.4e+02 Score=30.97 Aligned_cols=34 Identities=29% Similarity=0.515 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVE------------ELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv~------------~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
..|+.+|++|.. .|+||.+.++.||+++++++..
T Consensus 46 ~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 46 RKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777553 5778888888888777666554
No 365
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=30.44 E-value=1.5e+02 Score=33.39 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=13.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 909 AKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 909 ~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
-|++..||-.-.--+=|-|++||+
T Consensus 191 ~kR~~lKEa~~~~f~Al~E~aEK~ 214 (271)
T PF13805_consen 191 IKRQKLKEAYSLKFDALIERAEKQ 214 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666665544444455666663
No 366
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=30.37 E-value=1.1e+02 Score=32.84 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHh
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 930 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e 930 (1092)
-|+.+|+.|+..|..+++..+.+.........+.++++.+|.+ ..++--..||.++.+
T Consensus 96 wEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~E------qLL~YK~~ql~~~~~ 153 (195)
T PF12761_consen 96 WEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFE------QLLDYKERQLRELEE 153 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHH------HHHHHHHHHHHhhhc
Confidence 3556666666666666555555555443344456677776644 355555567766654
No 367
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=30.26 E-value=1.1e+02 Score=28.93 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=57.3
Q ss_pred hhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhhhHHHHHHHHHHHHHHHHh
Q 001361 860 DDAKRT----SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAG-----EETAKCRAAKDVIKSLTAQLKDMAE 930 (1092)
Q Consensus 860 ~~l~~~----~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~-----ee~~k~~~ake~ik~l~~qlk~~~e 930 (1092)
.+||.- -+|-.-||.-+..|..+-+.+..||++++-+..+.-..|. -.+.+..+.++-+|+.-.|..++..
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~ 83 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSG 83 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhh
Confidence 355555 6777888889999999999999999999998764332222 1234456788889999999999988
Q ss_pred hCCCccc
Q 001361 931 MLPVGAV 937 (1092)
Q Consensus 931 ~lp~~~~ 937 (1092)
|+..=..
T Consensus 84 kv~eLq~ 90 (96)
T PF11365_consen 84 KVMELQY 90 (96)
T ss_pred HHHHHhh
Confidence 8765433
No 368
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=30.23 E-value=70 Score=34.13 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
+.++.+|+.+..........+..++..++.+++
T Consensus 101 ~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~ 133 (194)
T PF08614_consen 101 NDELQELEKELSEKERRLAELEAELAQLEEKIK 133 (194)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333
No 369
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.95 E-value=1.1e+02 Score=35.26 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELE 891 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~ 891 (1092)
|+...+.+++.++++.+.++..|+
T Consensus 219 ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 219 EIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 370
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=29.87 E-value=1.6e+02 Score=27.18 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=11.7
Q ss_pred hHHHHHHHHHH--HHHHHHhhC
Q 001361 913 AAKDVIKSLTA--QLKDMAEML 932 (1092)
Q Consensus 913 ~ake~ik~l~~--qlk~~~e~l 932 (1092)
..++-|+-|-. .|||++-.|
T Consensus 37 ~v~~hI~lLheYNeiKD~gQ~L 58 (83)
T PF07061_consen 37 IVKRHIKLLHEYNEIKDIGQGL 58 (83)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 34556666654 677766554
No 371
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=29.85 E-value=2.5e+02 Score=25.75 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTT 894 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~ 894 (1092)
.+|+..||..+..|..+.+....|-++++
T Consensus 22 i~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~ 50 (80)
T PF10224_consen 22 IQEILELQDSLEALSDRVEEVKEENEKLE 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665555554444443
No 372
>PRK14164 heat shock protein GrpE; Provisional
Probab=29.74 E-value=2.3e+02 Score=31.00 Aligned_cols=56 Identities=25% Similarity=0.207 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 922 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~ 922 (1092)
-.++..|+.|+..|+.+...+.+|.+.++|+.+.-...+.+- ++.+.+|+++-.|.
T Consensus 76 ~~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~-a~~~~~~~LLpVlD 131 (218)
T PRK14164 76 DGEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIET-AKAGVATDLLPILD 131 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHh
Confidence 356777777888888888888888888877776644443322 22344444444443
No 373
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=29.65 E-value=5.2e+02 Score=24.96 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETA 909 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~ 909 (1092)
.+.+.+|+++.+.+++..++++..+++++.++++.-.+..+...
T Consensus 24 s~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~ 67 (110)
T PF10828_consen 24 SQRIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQK 67 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999998888876555544433
No 374
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.57 E-value=2e+02 Score=32.44 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=8.6
Q ss_pred hhhhhhhHHHHHHHHHHH
Q 001361 859 VDDAKRTSEEVIKLRAQV 876 (1092)
Q Consensus 859 ~~~l~~~~qev~~l~~qv 876 (1092)
.++++++.+|+.+-++|.
T Consensus 59 a~~~~~kq~eL~~rqeEL 76 (313)
T KOG3088|consen 59 AKDLAKKQAELLKKQEEL 76 (313)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 455554455544444443
No 375
>PLN02193 nitrile-specifier protein
Probab=29.48 E-value=1.1e+03 Score=28.65 Aligned_cols=198 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred CCeEEEEEeCCcEEEeCCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccC
Q 001361 366 EHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLG 445 (1092)
Q Consensus 366 ~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG 445 (1092)
..|++++. ++.||.+|.. ....-........+-+..-........-..-.....+..++.-+++||.+| |
T Consensus 167 ~~h~~~~~-~~~iyv~GG~--~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfG-------G 236 (470)
T PLN02193 167 CSHGIAQV-GNKIYSFGGE--FTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFG-------G 236 (470)
T ss_pred cccEEEEE-CCEEEEECCc--CCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEEC-------C
Q ss_pred CCCCcccccceeeecCCCCeEEEEecC-------CceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCccee
Q 001361 446 HGDRISVSTPREVDSLKGLRTVRAACG-------VWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLV 518 (1092)
Q Consensus 446 ~g~~~~~~~P~~V~~l~~~~I~~VacG-------~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~ 518 (1092)
.........-.......+ ....++.- ..|++++. +++||.+|-. +......
T Consensus 237 ~~~~~~~ndv~~yD~~t~-~W~~l~~~~~~P~~R~~h~~~~~-------------~~~iYv~GG~--------~~~~~~~ 294 (470)
T PLN02193 237 RDASRQYNGFYSFDTTTN-EWKLLTPVEEGPTPRSFHSMAAD-------------EENVYVFGGV--------SATARLK 294 (470)
T ss_pred CCCCCCCccEEEEECCCC-EEEEcCcCCCCCCCccceEEEEE-------------CCEEEEECCC--------CCCCCcc
Q ss_pred eEEecccCCCCeEEEE------eeCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEEEc----
Q 001361 519 PTCVAALVEPNFCQVS------CGHSLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACG---- 588 (1092)
Q Consensus 519 P~~V~~l~~~~I~~Ia------~G~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G---- 588 (1092)
-..+-.+....-..+. .......+..-+|++|++| +...........-.+.......+.+.
T Consensus 295 ~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviG---------G~~g~~~~dv~~yD~~t~~W~~~~~~g~~P 365 (470)
T PLN02193 295 TLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVY---------GFNGCEVDDVHYYDPVQDKWTQVETFGVRP 365 (470)
T ss_pred eEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEE---------CCCCCccCceEEEECCCCEEEEeccCCCCC
Q ss_pred ---CCEEEEEEcCCeEEEEe
Q 001361 589 ---DYHVAVLTSRTEVYTWG 605 (1092)
Q Consensus 589 ---~~HslaLT~dG~Vy~WG 605 (1092)
..|+++.- ++++|++|
T Consensus 366 ~~R~~~~~~~~-~~~iyv~G 384 (470)
T PLN02193 366 SERSVFASAAV-GKHIVIFG 384 (470)
T ss_pred CCcceeEEEEE-CCEEEEEC
No 376
>PRK12472 hypothetical protein; Provisional
Probab=29.46 E-value=1.8e+02 Score=35.18 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
..|...|...+..|++....-+.||....|+|..
T Consensus 217 ~~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~~ 250 (508)
T PRK12472 217 AREAAPLKASLRKLERAKARADAELKRADKALAA 250 (508)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777777777777777777777777766654
No 377
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=29.45 E-value=88 Score=30.12 Aligned_cols=34 Identities=6% Similarity=0.325 Sum_probs=28.1
Q ss_pred CCCCCeEEEEEcCc--eeEEEeCCHHHHHHHHHHHH
Q 001361 86 EKEYQSFSLIYNDR--SLDLICKDKDEAEVWFTGLK 119 (1092)
Q Consensus 86 ~~~~~~FSiiy~~r--sLDLia~~~~e~~~Wv~gL~ 119 (1092)
.+.--||-|+..++ ++=|.|.+++++..|+.++.
T Consensus 67 ~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 67 IDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred ccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 33345999999775 89999999999999998864
No 378
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=29.42 E-value=4.6e+02 Score=29.87 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=12.0
Q ss_pred CeEEEEEeCCcEEEeCCc
Q 001361 367 HHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 367 ~hs~aLT~dG~Vy~wG~n 384 (1092)
.|++++ -+|+||.+|..
T Consensus 116 ~~~~~~-~~~~iYv~GG~ 132 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGN 132 (323)
T ss_pred CceEEE-ECCEEEEEeCc
Confidence 355444 57999999965
No 379
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=29.31 E-value=3.4e+02 Score=26.30 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001361 870 IKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETA 909 (1092)
Q Consensus 870 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~ 909 (1092)
..|++|-.++.+++..++.+|-.+.+.++. ..+|..|..
T Consensus 47 ~~L~~q~~s~~qr~~eLqaki~ea~~~le~-eK~ak~~l~ 85 (107)
T PF09304_consen 47 QSLQAQNASRNQRIAELQAKIDEARRNLED-EKQAKLELE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 345556666677777777777777776665 666664433
No 380
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.31 E-value=1.9e+02 Score=32.24 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRA 913 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ 913 (1092)
-+++.+++.....++.+.++...||.+++.++++|-....+|-++-+.
T Consensus 162 Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~ 209 (243)
T cd07666 162 QAELDSKVEALANKKADRDLLKEEIEKLEDKVECANNALKADWERWKQ 209 (243)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566656888899999999999997777777766544
No 381
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=29.30 E-value=1.9e+02 Score=24.69 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEA 900 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea 900 (1092)
..+|..|.++|..|......+..+++..+....-|
T Consensus 9 s~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 9 SSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777666544443
No 382
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=29.13 E-value=88 Score=29.37 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=37.2
Q ss_pred CCCCCcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 851 GLASPKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 851 ~~~~~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
|-.|-+...+++.+. .+++..+..+++.|+.+.+.++.+++.+++++.+
T Consensus 52 G~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 52 GKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp TTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666777766 7777888888888888888888888888887764
No 383
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=28.97 E-value=4.6e+02 Score=24.07 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 910 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k 910 (1092)
-+.+++..++.|+++.+..-.|+...-++..+-..-+.+..++
T Consensus 27 ~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~ 69 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEK 69 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555555555555555444333333333
No 384
>PRK14146 heat shock protein GrpE; Provisional
Probab=28.96 E-value=2.4e+02 Score=30.77 Aligned_cols=56 Identities=11% Similarity=0.191 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 922 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~ 922 (1092)
.+|+.+|++++..|+.+.-.+.++++-++|+.+.-..-|...+. .+.++++|-.|.
T Consensus 60 ~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~-e~~~~~lLpv~D 115 (215)
T PRK14146 60 QKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAV-KSLVSGFLNPID 115 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHh
Confidence 35667777777778777777778888777777765554444433 244444444443
No 385
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=28.91 E-value=1.3e+02 Score=26.06 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 876 VEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 876 v~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
|+.|+.+...++.||.+++..+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777888888888887765543
No 386
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=28.88 E-value=4.1e+02 Score=27.68 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 910 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k 910 (1092)
.++..+++.|++.+..+ .+.+|+..+++.++-+.-|.+|+.+
T Consensus 59 l~~A~~~~~ea~~~~~~---~~~~L~~a~~ea~~ii~~a~~~a~~ 100 (174)
T PRK07352 59 LKEAEERLRQAAQALAE---AQQKLAQAQQEAERIRADAKARAEA 100 (174)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444 3344555555555555555555544
No 387
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=28.43 E-value=1.8e+02 Score=37.15 Aligned_cols=8 Identities=13% Similarity=0.455 Sum_probs=4.0
Q ss_pred hHhhcccc
Q 001361 1069 VYQQYNVS 1076 (1092)
Q Consensus 1069 ~~~~~~~~ 1076 (1092)
|...|.+.
T Consensus 628 i~~~y~l~ 635 (650)
T TIGR03185 628 ISHEYLLE 635 (650)
T ss_pred hhhheEEE
Confidence 55555544
No 388
>PRK14160 heat shock protein GrpE; Provisional
Probab=28.34 E-value=3.1e+02 Score=29.83 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 922 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~ 922 (1092)
.+++.+|+.++..|+.+...+.++++-++|..+.-...+..-+ ..+.++++|-.|.
T Consensus 67 ~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a-~e~~~~~LLpVlD 122 (211)
T PRK14160 67 KEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDA-CEDVLKELLPVLD 122 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHh
Confidence 4556666667777777776677777777776665444443322 2344444444333
No 389
>PRK05560 DNA gyrase subunit A; Validated
Probab=28.07 E-value=1.5e+03 Score=29.78 Aligned_cols=119 Identities=14% Similarity=0.039 Sum_probs=63.3
Q ss_pred EEecCceEEEEEcCCeEEEEeCCCCCcc---CCCCCCCCCcceEeeccCCCcEEEEEeCC-----CeEEEEEeCCcEEEe
Q 001361 310 IACGGRHAALVTKQGEVFSWGEELGGRL---GHGVDSDVSHPKLIDALKNINVELVACGE-----HHTCAVTLSGDMYTW 381 (1092)
Q Consensus 310 Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqL---G~g~~~~~~~P~~V~~l~~~~I~~Ia~G~-----~hs~aLT~dG~Vy~w 381 (1092)
++....+.+++|+.|++|..-...--.. +.|. ..-..+....+.+|+.+.+-. ...+++|.+|.+.--
T Consensus 544 ~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~----~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi 619 (805)
T PRK05560 544 VASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGR----PIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKT 619 (805)
T ss_pred EecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCe----EHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEE
Confidence 3445566889999999999865421111 1111 111123334566777776644 357888999977654
Q ss_pred CCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEe--CCCeEEEEEcCCcEEEeecCCC
Q 001361 382 GGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSC--GPWHTAVVTSAGQLFTFGDGTF 441 (1092)
Q Consensus 382 G~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~Isc--G~~Ht~aLt~dG~Vy~wG~N~~ 441 (1092)
-...+....-+ |. .....-++..++.+.. ...+.+++|+.|++|.+-....
T Consensus 620 ~l~~~~~~~r~-G~--------~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eI 672 (805)
T PRK05560 620 SLSEFSNIRSN-GI--------IAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDV 672 (805)
T ss_pred EhHHhhhcccC-Cc--------eeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhc
Confidence 32211000000 00 0000112334554433 3457899999999998865443
No 390
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.00 E-value=1.3e+02 Score=28.74 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=34.6
Q ss_pred CCCcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 853 ASPKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 853 ~~~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
.|-+...+++... ...+..+...++.|+.+.+.++.+++.++++++|
T Consensus 55 vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 55 VLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666 6667777778888888888888888888888776
No 391
>PF03920 TLE_N: Groucho/TLE N-terminal Q-rich domain; InterPro: IPR005617 The N-terminal domain of the Grouch/TLE co-repressor proteins are involved in oligomerisation.; GO: 0005515 protein binding
Probab=27.92 E-value=1e+02 Score=30.84 Aligned_cols=42 Identities=21% Similarity=0.142 Sum_probs=32.2
Q ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 854 SPKIVVDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTR 895 (1092)
Q Consensus 854 ~~~~~~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~ 895 (1092)
+--+..|.+++-.+|...|++|..+|+-.||.+..|-....+
T Consensus 17 ~KfT~~es~drIKeEf~~lqaq~hslk~E~eKla~EK~emqr 58 (135)
T PF03920_consen 17 FKFTTSESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQR 58 (135)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcccchHHH
Confidence 334456777777999999999999999999998765444443
No 392
>PRK14147 heat shock protein GrpE; Provisional
Probab=27.91 E-value=2.7e+02 Score=29.34 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAV 903 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~ 903 (1092)
.+|+.+|++|+..|+.+.-.+.+|++-++|..+.-..-
T Consensus 24 ~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~ 61 (172)
T PRK14147 24 KAEVESLRSEIALVKADALRERADLENQRKRIARDVEQ 61 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888777777777877777766654333
No 393
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=27.91 E-value=3.3e+02 Score=31.12 Aligned_cols=65 Identities=25% Similarity=0.385 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCc
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVG 935 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~ 935 (1092)
.+++.+++.++..|.........+|..+.+.++. ..+.+-+.+.++.+| .|....+++-||+--|
T Consensus 213 he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~--l~~~~~~~~~~~~~e---e~kera~ei~EKfk~G 277 (294)
T COG1340 213 HEEFVELSKKIDELHEEFRNLQNELRELEKKIKA--LRAKEKAAKRREKRE---ELKERAEEIYEKFKRG 277 (294)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCC
Confidence 3333444444444444444444444444433332 233344444444444 3333455555555544
No 394
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.91 E-value=1.1e+02 Score=39.87 Aligned_cols=66 Identities=21% Similarity=0.303 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
...+.+..+...|.++.+.++.|+++.++++...-.++..+.+.-.+.|+-.+-+..++.++.++|
T Consensus 807 ~~~id~~~e~~rl~k~~~k~~~e~~~~~~kl~ne~f~~kAp~~vv~~e~~~~~~~~~~~~~l~~~l 872 (877)
T COG0525 807 AGLIDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEERL 872 (877)
T ss_pred cchhhHHHHHhhHHHHHHHHHHHHHHHHHhhcchhhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334556667888888899999999999999987777776666666666666666666666666554
No 395
>PRK09343 prefoldin subunit beta; Provisional
Probab=27.71 E-value=1.4e+02 Score=29.34 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=28.0
Q ss_pred CCcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 854 SPKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL 901 (1092)
Q Consensus 854 ~~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~ 901 (1092)
|-+...+++++. ...+.-+...++.|+.+-+.++.++++++++++++.
T Consensus 64 lv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 64 LVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555554 444444555666666666666666666666666654
No 396
>PRK02119 hypothetical protein; Provisional
Probab=27.66 E-value=4.5e+02 Score=23.59 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 001361 916 DVIKSLTAQLKDMAEM 931 (1092)
Q Consensus 916 e~ik~l~~qlk~~~e~ 931 (1092)
.-++.|..||+++...
T Consensus 44 ~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 44 VQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHhhccc
Confidence 3455566777776544
No 397
>PRK14158 heat shock protein GrpE; Provisional
Probab=27.50 E-value=3.9e+02 Score=28.74 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 922 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~ 922 (1092)
.+++..|+.|+..|+.+.-.+.+|++-++|+.+.-...+.+-+. .+.++++|-.+.
T Consensus 46 e~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~-~~~~~~lLpV~D 101 (194)
T PRK14158 46 EEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGN-ESLILEILPAVD 101 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHh
Confidence 56777888888888888888888888888887765444433322 344444444443
No 398
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=27.48 E-value=4.6e+02 Score=27.36 Aligned_cols=62 Identities=27% Similarity=0.438 Sum_probs=42.1
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRA-------QVEELTRKSQLQEIELERTTRQLK---EALAVAGEETAKCRAAKDVIKSLTAQLKD 927 (1092)
Q Consensus 866 ~qev~~l~~-------qv~~L~~~~~~~~~ei~~~~~~~~---ea~~~a~ee~~k~~~ake~ik~l~~qlk~ 927 (1092)
++|+.+|+. .+...+++......+++..++++. +...-..+|..++|...+-++.....|+.
T Consensus 62 n~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 62 NKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999988 345667777777777777777665 44555677777766665555555555544
No 399
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=27.48 E-value=1.5e+02 Score=37.14 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHH
Q 001361 882 KSQLQEIELERTTRQLKEALAVAGEETA--KCRAAKDVIKSLTAQLKDMA 929 (1092)
Q Consensus 882 ~~~~~~~ei~~~~~~~~ea~~~a~ee~~--k~~~ake~ik~l~~qlk~~~ 929 (1092)
..+.++.++++++++++++ +++.. +.++|+++-+.++.+|++|.
T Consensus 347 ~le~L~~el~~l~~~l~~~----a~~Ls~~R~~~a~~l~~~v~~~l~~L~ 392 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKA----AVALSLIRRKAAERLAKRVEQELKALA 392 (563)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444444555555544443 23322 35788999999999999853
No 400
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=27.48 E-value=5.4e+02 Score=26.74 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKC 911 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~ 911 (1092)
.++..+.+.+++.+..+ -+.+|..++++.++-+.-|.+|+.+-
T Consensus 62 l~~Ae~~~~ea~~~~~e---~e~~L~~Ar~eA~~Ii~~A~~eAe~~ 104 (167)
T PRK08475 62 LEEIQEKLKESKEKKED---ALKKLEEAKEKAELIVETAKKEAYIL 104 (167)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444 45556666666666666666666653
No 401
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=27.35 E-value=1.6e+02 Score=34.37 Aligned_cols=52 Identities=25% Similarity=0.246 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 883 SQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 883 ~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
...++.++..++.++.+.-....+..-.-+++++=|..|..||++...++-.
T Consensus 216 i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~ 267 (362)
T TIGR01010 216 ISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSG 267 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334445555555555544445555666677777777777777776666544
No 402
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=27.35 E-value=77 Score=27.11 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQ 896 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~ 896 (1092)
-+||.-|+.++..|..+-.+++.|=+.++..
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888888888888888888777666543
No 403
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=27.32 E-value=16 Score=30.44 Aligned_cols=28 Identities=36% Similarity=0.922 Sum_probs=16.6
Q ss_pred CCCCCcCCccc------ccccccccccceEEecc
Q 001361 661 CSGCRIPFNFK------RKRHNCYNCGLVYCHTC 688 (1092)
Q Consensus 661 C~~C~~~F~~~------~krhhC~~CG~v~C~~C 688 (1092)
|-+|..+|.-. ..+..|..|+..||..|
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC 35 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC 35 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc
Confidence 66788887754 35788999999999888
No 404
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=27.32 E-value=5.2e+02 Score=26.69 Aligned_cols=60 Identities=25% Similarity=0.300 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhhhHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE---ALAVAGEETAKCRAAKDVIKSLTAQL 925 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e---a~~~a~ee~~k~~~ake~ik~l~~ql 925 (1092)
.+|+.+++.||..|..+-..++..+...++++++ ++.-|..+...|.-++|=|.-|..+.
T Consensus 66 ~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf~eL~~~~ 128 (152)
T PF07321_consen 66 LKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQEKFAELAEQE 128 (152)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888888888777764 44455666666666666666666543
No 405
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.27 E-value=3.6e+02 Score=26.91 Aligned_cols=34 Identities=15% Similarity=0.374 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhh
Q 001361 877 EELTRKSQLQEIELERT---TRQLKEALAVAGEETAK 910 (1092)
Q Consensus 877 ~~L~~~~~~~~~ei~~~---~~~~~ea~~~a~ee~~k 910 (1092)
+-|+++.+.++.+|++. .+.+++-+.-+.++.+-
T Consensus 64 khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~ 100 (126)
T PF07889_consen 64 KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQ 100 (126)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34455555555444332 23333444444444443
No 406
>PRK14145 heat shock protein GrpE; Provisional
Probab=27.26 E-value=3.8e+02 Score=28.84 Aligned_cols=57 Identities=9% Similarity=0.094 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
.+++.+|+.++..|+.+.-.+.+|++-++|.++.-..-+.+.+. -+.+++++-.+.+
T Consensus 51 ~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~-e~~~~~LLpV~Dn 107 (196)
T PRK14145 51 KQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGK-EQVILELLPVMDN 107 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHhH
Confidence 34556666666666666666667777666666554443333332 2444444444443
No 407
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=27.16 E-value=1.8e+02 Score=27.77 Aligned_cols=47 Identities=28% Similarity=0.286 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVA--GEETAKCR 912 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a--~ee~~k~~ 912 (1092)
-+|=..|.++|.+..++...++.+|+.+...-+|--.++ .+|-.|.|
T Consensus 21 y~EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~~I~~eY~k~K 69 (101)
T PF07303_consen 21 YDEYKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIAQILQEYNKKK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999887666654444 46666664
No 408
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=27.14 E-value=2.8e+02 Score=33.51 Aligned_cols=71 Identities=25% Similarity=0.337 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQ--------------LKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEM 931 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~--------------~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~ 931 (1092)
..|.++|+.--+...++|+-.+.|+.+++.. ++.|-....-|....|+|+--...|..|.+-++|-
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~ 106 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDM 106 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6788999998888889998888888776653 44556667778888888888888888888888777
Q ss_pred CCCcc
Q 001361 932 LPVGA 936 (1092)
Q Consensus 932 lp~~~ 936 (1092)
|--|.
T Consensus 107 l~~~~ 111 (604)
T KOG3564|consen 107 LKCDI 111 (604)
T ss_pred Hhccc
Confidence 77664
No 409
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=27.13 E-value=1.6e+02 Score=30.46 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 889 ELERTTRQLKEALAVA-GEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 889 ei~~~~~~~~ea~~~a-~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
+..+..+.+++|.+.- -.|-+--+||||-...|..++.+|..+|--
T Consensus 26 ~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~~ 72 (157)
T PRK01885 26 ERPEVTQKVSWAASLGDRSENADYIYGKKRLREIDRRVRFLTKRLEN 72 (157)
T ss_pred hhHHHHHHHHHHHHcCCcchhhcHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444445555554433 135555789999999999999999988854
No 410
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=27.12 E-value=4.4e+02 Score=27.72 Aligned_cols=43 Identities=14% Similarity=0.044 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKC 911 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~ 911 (1092)
.++..+.+.|+..+..+ .+.+|+.++++.++.+.-|.+|+.+.
T Consensus 64 l~~Ae~~~~eA~~~~~e---~e~~L~~A~~ea~~ii~~A~~~ae~~ 106 (184)
T CHL00019 64 IRNSEERREEAIEKLEK---ARARLRQAELEADEIRVNGYSEIERE 106 (184)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544 34466666777777666666666554
No 411
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.92 E-value=3.2e+02 Score=30.78 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKD 927 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~ 927 (1092)
.||..|.+||+.+-.+.+.++.|+.+++.++++. =.+.+..++-|+....-|++
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l-------~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKL-------QKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444331 12344477777766654443
No 412
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=26.88 E-value=1.2e+02 Score=31.44 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCc
Q 001361 876 VEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVG 935 (1092)
Q Consensus 876 v~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~ 935 (1092)
+++|+.+.+..-..|+....+++|++.-+.+ -++|+++.+...|.+.+++|--.
T Consensus 29 ~~aik~~sd~~~~~l~~~~~~l~eeik~~n~------~~~e~l~~~~~kl~et~~~L~k~ 82 (155)
T PF07464_consen 29 VKAIKEQSDSVAQQLQNVSSSLQEEIKDANP------EAEEALKQLKTKLEETAEKLRKA 82 (155)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS------THHHHHHHHHHHHHHHHHGGGG-
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhcCh------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788889999999999999999986654433 37789999999999999999843
No 413
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=26.78 E-value=2.1e+02 Score=31.95 Aligned_cols=64 Identities=20% Similarity=0.315 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
.+|+..+.+++++|+.+-+.+..-+++.+ ++++.+ -...|.+. ..+=|.+|..|++.|.++.-=
T Consensus 131 T~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l-~ie~~L~~---v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 131 TEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLL-EIERELSR---VRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHhhce
Confidence 56677777777777777776666666444 566533 33344444 677789999999999987654
No 414
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=26.76 E-value=5e+02 Score=26.31 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETA 909 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~ 909 (1092)
.+|..+++.+++.+..+ .+.+|...+++..+...-|.+|+.
T Consensus 44 l~~a~~~~~~a~~~~~e---~~~~l~~a~~ea~~i~~~a~~ea~ 84 (156)
T PRK05759 44 LAAAERAKKELELAQAK---YEAQLAEARAEAAEIIEQAKKRAA 84 (156)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544444 333344444444444444444433
No 415
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=26.68 E-value=2.9e+02 Score=29.66 Aligned_cols=41 Identities=22% Similarity=0.136 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGE 906 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~e 906 (1092)
-|+|..|+++|+.--+..++++..|..+..-+--|..-|.+
T Consensus 73 e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~q 113 (272)
T KOG4552|consen 73 EQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQ 113 (272)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444444444444444444444444443
No 416
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=26.57 E-value=4.1e+02 Score=33.77 Aligned_cols=62 Identities=26% Similarity=0.299 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---------HhhhhhhhHHHHHHHHHHHHHHH-HhhCCCcc
Q 001361 875 QVEELTRKSQLQEIELERTTR-QLKEALAVAG---------EETAKCRAAKDVIKSLTAQLKDM-AEMLPVGA 936 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~-~~~ea~~~a~---------ee~~k~~~ake~ik~l~~qlk~~-~e~lp~~~ 936 (1092)
.+.+|+.+.+.++..|+.... ..+||..+|. ++-+|-+++-|---.|..+|+-- -|..|++.
T Consensus 163 ~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~ 235 (739)
T PF07111_consen 163 ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEV 235 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCccc
Confidence 456777888888877776665 3466666665 56677777777777777788754 48888874
No 417
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=26.53 E-value=1.6e+02 Score=28.35 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=33.7
Q ss_pred CCcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 854 SPKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL 901 (1092)
Q Consensus 854 ~~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~ 901 (1092)
|-+...++++.. ...+..+...++.|+.+.+.++.+++.+++++++++
T Consensus 60 lv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 60 LVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred hheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555 556666677788888888888888888888888764
No 418
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=26.50 E-value=1.3e+02 Score=30.95 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=37.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHH--hhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 879 LTRKSQLQE-IELERTTRQLKEALAVAGE--ETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 879 L~~~~~~~~-~ei~~~~~~~~ea~~~a~e--e~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
|+++++.+. .+.-+..+.+++|.+.- + |-+--.|||+-...|..+++++..+|--
T Consensus 13 L~~El~~L~~~~r~~~~~~i~~Ar~~G-DlsENaeY~aak~~~~~le~rI~~L~~~L~~ 70 (156)
T TIGR01461 13 LKQELNYLWREERPEVTQKVTWAASLG-DRSENADYQYGKKRLREIDRRVRFLTKRLEN 70 (156)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHcC-CcchhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444332 34555555666655433 4 7777889999999999999999988864
No 419
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=26.45 E-value=2.5e+02 Score=38.07 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=4.5
Q ss_pred CeEEEEEc
Q 001361 90 QSFSLIYN 97 (1092)
Q Consensus 90 ~~FSiiy~ 97 (1092)
..|++|+|
T Consensus 23 ~~~~~i~G 30 (1164)
T TIGR02169 23 KGFTVISG 30 (1164)
T ss_pred CCeEEEEC
Confidence 34666664
No 420
>PRK00736 hypothetical protein; Provisional
Probab=26.33 E-value=2.9e+02 Score=24.46 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q 001361 918 IKSLTAQLKDMA 929 (1092)
Q Consensus 918 ik~l~~qlk~~~ 929 (1092)
++.|..||+++.
T Consensus 42 l~~L~~rl~~~~ 53 (68)
T PRK00736 42 LDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHhc
Confidence 444555555554
No 421
>PHA03011 hypothetical protein; Provisional
Probab=26.32 E-value=3.6e+02 Score=25.61 Aligned_cols=53 Identities=26% Similarity=0.287 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
.+-+..|++|-..|-++....+-|+.-+..-+|+ -.|-|-.|++|+..+.|.+
T Consensus 63 ~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQd--------------n~d~I~~LraeIDkLK~ni 115 (120)
T PHA03011 63 IEILDELIAQYNELLDEYNLIENEIKDLEIIIQD--------------NDDEIHFLRAEIDKLKENI 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------chHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888888888888777777 5667888888877666553
No 422
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.18 E-value=4.8e+02 Score=23.36 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhC
Q 001361 916 DVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 916 e~ik~l~~qlk~~~e~l 932 (1092)
.-++.|..||+++.+..
T Consensus 43 ~~l~~L~~rl~~~~~~~ 59 (72)
T PRK02793 43 DHLRLLTEKLKASQPSN 59 (72)
T ss_pred HHHHHHHHHHHhhcccc
Confidence 33555666777765443
No 423
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.13 E-value=3.6e+02 Score=32.53 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
+.++.+|-.+..+|.++.|.+..+..+..|++.
T Consensus 28 ~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig 60 (429)
T COG0172 28 VDKLLELDEERRKLLRELEELQAERNELSKEIG 60 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555554
No 424
>PLN02381 valyl-tRNA synthetase
Probab=25.92 E-value=92 Score=42.02 Aligned_cols=64 Identities=13% Similarity=0.210 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL-------AVAGEETAKCRAAKDVIKSLTAQLKDMA 929 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~-------~~a~ee~~k~~~ake~ik~l~~qlk~~~ 929 (1092)
+++++.+.+|+..|..+.+.++.||+++++++...- .+..+|-+|.....+-|..|...|..+.
T Consensus 989 l~~~iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~~vve~e~~kl~~~~~~l~~l~~~l~~l~ 1059 (1066)
T PLN02381 989 AQGAVNAEAELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEEDARKLTKLLQELEFFEKESKRLE 1059 (1066)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667777777777777778888877776432 4455666666666666666666665553
No 425
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.81 E-value=1.7e+02 Score=35.65 Aligned_cols=59 Identities=31% Similarity=0.360 Sum_probs=0.0
Q ss_pred hhhhhhhh--------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 001361 858 VVDDAKRT--------------SEEVIKLRAQVEELTR---KSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKS 920 (1092)
Q Consensus 858 ~~~~l~~~--------------~qev~~l~~qv~~L~~---~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~ 920 (1092)
+.|+||+. -+|-+-||-||.+|++ ..|-+..||.|+...++= +..+.||+..
T Consensus 154 lr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~el-ln~q~ee~~~---------- 222 (772)
T KOG0999|consen 154 LRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETEL-LNSQLEEAIR---------- 222 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHH----------
Q ss_pred HHHHHHHHHhh
Q 001361 921 LTAQLKDMAEM 931 (1092)
Q Consensus 921 l~~qlk~~~e~ 931 (1092)
||++|||
T Consensus 223 ----Lk~IAek 229 (772)
T KOG0999|consen 223 ----LKEIAEK 229 (772)
T ss_pred ----HHHHHHH
No 426
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=25.81 E-value=5.5e+02 Score=24.37 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
.+..+|+.|...|.++...++.++.+.+.-++
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~ 37 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALE 37 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777666666666655544433
No 427
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=25.79 E-value=1.6e+02 Score=30.09 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001361 877 EELTRKSQLQEIELERTTRQLKEALAVAGEETAK 910 (1092)
Q Consensus 877 ~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k 910 (1092)
+.+++..+.++..|+.+++++.++-.+-+||+++
T Consensus 7 e~~~~~~~~L~~~le~a~e~~~~~~elT~eEl~l 40 (146)
T PF07295_consen 7 EALEHSEEELQEALEKAKEYLVAAGELTREELAL 40 (146)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 3456666777888888888888888888888887
No 428
>PRK14157 heat shock protein GrpE; Provisional
Probab=25.76 E-value=2.9e+02 Score=30.36 Aligned_cols=41 Identities=7% Similarity=0.001 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGE 906 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~e 906 (1092)
..|+.+|++|+..|+.+...+..|.+.++|+.+.=...+.+
T Consensus 83 ~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~ 123 (227)
T PRK14157 83 LTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQ 123 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777776654444333
No 429
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=25.65 E-value=5.1e+02 Score=29.78 Aligned_cols=19 Identities=11% Similarity=0.335 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQ 884 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~ 884 (1092)
+.+|.+|+.+|++|+.+.+
T Consensus 87 ~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 87 KRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555553
No 430
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=25.58 E-value=2.5e+02 Score=38.39 Aligned_cols=58 Identities=22% Similarity=0.292 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 875 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
|+..|+.+.+.++.+++...+++++.-.-..+--..+...++-|..|..++.++.+++
T Consensus 405 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 462 (1163)
T COG1196 405 EIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL 462 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444344333322222212233444555555555554444433
No 431
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=25.53 E-value=4.1e+02 Score=32.42 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHhhCCCc
Q 001361 889 ELERTTRQLKEALAVAGEET-AKCRAAKDVIKSLTAQLKDMAEMLPVG 935 (1092)
Q Consensus 889 ei~~~~~~~~ea~~~a~ee~-~k~~~ake~ik~l~~qlk~~~e~lp~~ 935 (1092)
+|--+++|++. ..+-.||- +-..|+|+-=+-||++|+||-+|--.-
T Consensus 241 ql~d~qkk~k~-~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~ 287 (596)
T KOG4360|consen 241 QLVDLQKKIKY-LRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAEC 287 (596)
T ss_pred HHHhhHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33334444443 33333333 234567777778899999997765443
No 432
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.49 E-value=1.6e+02 Score=31.28 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=26.9
Q ss_pred hhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 860 DDAKRT---SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 860 ~~l~~~---~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
++|++. .++-.+++.++..|++..+.+|.+|..+-++|.+
T Consensus 12 ~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~ 54 (188)
T PF10018_consen 12 DELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKE 54 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 4555666667777777777777777777777666
No 433
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=25.47 E-value=4.5e+02 Score=24.53 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=8.7
Q ss_pred hhhhhhHHHHHHHHH
Q 001361 908 TAKCRAAKDVIKSLT 922 (1092)
Q Consensus 908 ~~k~~~ake~ik~l~ 922 (1092)
+.+.++|-|-|+++.
T Consensus 73 s~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 73 SRRLDSAIETIRAVL 87 (89)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445566666666553
No 434
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=25.45 E-value=2.7e+02 Score=26.78 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=41.1
Q ss_pred EecCCccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC-ceeEEEeCCHHHHHHHHHHHHH
Q 001361 53 WISGKEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDEAEVWFTGLKA 120 (1092)
Q Consensus 53 W~~~k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rsLDLia~~~~e~~~Wv~gL~~ 120 (1092)
|.++|.+-.|..+.|.|||.-..= +-.+....|-|-..+ --.=|.|.|+++.+.|+.-|+.
T Consensus 45 PKssrpk~~v~C~~I~EvR~tt~L-------EmPD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 45 PKSSKPKLQVACSSISEVRECTRL-------EMPDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred CCCCCCccccchhhhhhhhhcccc-------cccCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 445667777899999999864322 111233466665544 3345789999999999998763
No 435
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=25.44 E-value=2.6e+02 Score=25.32 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 001361 873 RAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKS 920 (1092)
Q Consensus 873 ~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~ 920 (1092)
..|+.+.-++.|.++.|.......+++..+-|.-+==--|+.+.||+-
T Consensus 3 ~~~Lr~~ieRiErLEeEk~~i~~dikdVyaEAK~~GfD~K~lr~ii~l 50 (74)
T PF10073_consen 3 AEQLRQFIERIERLEEEKKAISDDIKDVYAEAKGNGFDTKALRQIIRL 50 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 346777888899999999999999999998888777777888888874
No 436
>PTZ00464 SNF-7-like protein; Provisional
Probab=25.40 E-value=4.2e+02 Score=28.83 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 870 IKLRAQVEELTRKSQLQEIELERTTRQLKEA 900 (1092)
Q Consensus 870 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea 900 (1092)
.+|+..++.|.+|.+.++.|++++++++++.
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~ 51 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQIQRT 51 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666677777777777777777777666544
No 437
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=25.39 E-value=2.2e+02 Score=24.54 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 887 EIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 887 ~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
...|+.+.+.+.|+..+|.+=....+.=.|.|+.....|.+|...||.
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~ 54 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPK 54 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 346777888888888888888888888888888888888888877765
No 438
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=25.39 E-value=5e+02 Score=25.86 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
+..+.+++..+++.++.+....+.++++-+.-+..=++.+....++|+=...+..
T Consensus 19 ~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~ 73 (132)
T PF07926_consen 19 EEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQ 73 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444443333333333333334433333333
No 439
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=25.37 E-value=1.6e+02 Score=33.98 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 871 KLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 871 ~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
.|..|++.|+++-+.++.|++.++++++.
T Consensus 36 ~l~~~~~~lr~e~~~l~~~~~~~~~~~~~ 64 (308)
T PF11382_consen 36 SLEDQFDSLREENDELRAELDALQAQLNA 64 (308)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666555
No 440
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=25.31 E-value=1.3e+03 Score=28.28 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=33.6
Q ss_pred EEEEEeCCCeEEEEEeCCcEEEeCCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCCC-eEEEEEcCCcEEEee
Q 001361 359 VELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPW-HTAVVTSAGQLFTFG 437 (1092)
Q Consensus 359 I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~-Ht~aLt~dG~Vy~wG 437 (1092)
-.-|.||..|..+-+-.|..+.=-.+ +....+...|..+..+.+ ..+-=+++|.++.|+
T Consensus 214 nliit~Gk~H~~Fw~~~~~~l~k~~~--------------------~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~ 273 (626)
T KOG2106|consen 214 NLIITCGKGHLYFWTLRGGSLVKRQG--------------------IFEKREKKFVLCVTFLENGDVITGDSGGNILIWS 273 (626)
T ss_pred cEEEEeCCceEEEEEccCCceEEEee--------------------ccccccceEEEEEEEcCCCCEEeecCCceEEEEe
Confidence 34578888887777655544321111 111111234556655554 445556789999998
Q ss_pred cC
Q 001361 438 DG 439 (1092)
Q Consensus 438 ~N 439 (1092)
.+
T Consensus 274 ~~ 275 (626)
T KOG2106|consen 274 KG 275 (626)
T ss_pred CC
Confidence 63
No 441
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=25.31 E-value=2.6e+02 Score=37.08 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=45.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 001361 860 DDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQ 924 (1092)
Q Consensus 860 ~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~q 924 (1092)
.+.++..+|+....++++.|+.+.+..+.|.|..+.....--.-+..|..|..+++|.+|.-...
T Consensus 741 ~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk 805 (1074)
T KOG0250|consen 741 REIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDK 805 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444477777777788888888888888877777776666666667777777777777644443
No 442
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=25.17 E-value=1.3e+02 Score=28.70 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHH
Q 001361 874 AQVEELTRKSQL----QEIELERTTRQLK 898 (1092)
Q Consensus 874 ~qv~~L~~~~~~----~~~ei~~~~~~~~ 898 (1092)
+|++.|+++.++ +..+|++++++|+
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 477888888777 7888888777764
No 443
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.16 E-value=3.3e+02 Score=32.68 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 001361 911 CRAAKDVIKSLTAQLKDMA 929 (1092)
Q Consensus 911 ~~~ake~ik~l~~qlk~~~ 929 (1092)
+++-.|-|-.|..||+++.
T Consensus 430 ~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 430 LGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHhHh
Confidence 4444556667777777764
No 444
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=25.12 E-value=1.9e+02 Score=35.06 Aligned_cols=9 Identities=33% Similarity=0.309 Sum_probs=4.3
Q ss_pred eccceEEEE
Q 001361 1025 DETGVYITL 1033 (1092)
Q Consensus 1025 ~epgv~~t~ 1033 (1092)
..|||.|.+
T Consensus 420 vypgv~i~i 428 (451)
T PF03961_consen 420 VYPGVEIHI 428 (451)
T ss_pred EECCEEEEE
Confidence 345555444
No 445
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=25.04 E-value=5.3e+02 Score=30.81 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
...+..+..++..+++....++.++++++.+++
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~ 243 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQYQ 243 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 446
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=24.95 E-value=3.4e+02 Score=34.75 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEE 907 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee 907 (1092)
.+++..|+.++..|++++..++.++..+.+.+++++....+-
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 281 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL 281 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777766666666666666666666666555444
No 447
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=24.93 E-value=2.8e+02 Score=37.63 Aligned_cols=9 Identities=44% Similarity=0.527 Sum_probs=4.1
Q ss_pred EEEEcCCCc
Q 001361 1032 TLVALPGGL 1040 (1092)
Q Consensus 1032 t~~~~~~g~ 1040 (1092)
.+.+.|.|.
T Consensus 1059 ~~~~~~~~~ 1067 (1164)
T TIGR02169 1059 ELSAKPKGK 1067 (1164)
T ss_pred EEEEEcCCC
Confidence 344445444
No 448
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.88 E-value=2.1e+02 Score=24.67 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
.+.|..|..+|..|....+.+..+++.+++.+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555544443
No 449
>PRK12704 phosphodiesterase; Provisional
Probab=24.77 E-value=2.2e+02 Score=35.36 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhhh
Q 001361 896 QLKEALAVAGEETA 909 (1092)
Q Consensus 896 ~~~ea~~~a~ee~~ 909 (1092)
+|++...|-.|||.
T Consensus 143 ~l~~~a~lt~~ea~ 156 (520)
T PRK12704 143 ELERISGLTAEEAK 156 (520)
T ss_pred HHHHHhCCCHHHHH
Confidence 34444444445543
No 450
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.74 E-value=1.8e+02 Score=24.98 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 875 QVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
+++.|..+++.++.+.+.+++++..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~ 51 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQ 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777666666655554
No 451
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=24.72 E-value=5.5e+02 Score=23.55 Aligned_cols=18 Identities=6% Similarity=0.198 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001361 875 QVEELTRKSQLQEIELER 892 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~ 892 (1092)
|+..+-++...+-..++.
T Consensus 48 e~~~ll~~~n~l~~dv~~ 65 (90)
T PF06103_consen 48 EINDLLHNTNELLEDVNE 65 (90)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 452
>PRK06746 peptide chain release factor 2; Provisional
Probab=24.72 E-value=4e+02 Score=30.94 Aligned_cols=63 Identities=17% Similarity=0.250 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHHHHHH-hhCCCcc
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEE--TAKCRAAKDVIKSLTAQLKDMA-EMLPVGA 936 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee--~~k~~~ake~ik~l~~qlk~~~-e~lp~~~ 936 (1092)
.+|+..|+.-|+.+.+ +....+.++++..|+.|| .+=..-|++-|+.|..+|+.+. +.||.+.
T Consensus 17 ~ke~~~l~~~v~~~~~--------~~~~~~d~~~~~el~~~~~d~e~~~~a~~e~~~l~~~l~~le~~~l~~~~ 82 (326)
T PRK06746 17 INEANALKDMVGKFRQ--------LDETFENLEITHELLKEEYDEDLHEELESEVKGLIQEMNEYELQLLLSDP 82 (326)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4555555554443332 344445555555555332 2223456677777888777764 5667654
No 453
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=24.71 E-value=4.3e+02 Score=34.01 Aligned_cols=57 Identities=28% Similarity=0.378 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMA 929 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~ 929 (1092)
.-||+||+.|...+.+.=-.+-..||.++++++-|-.-..+--+| |--|+++|+.|.
T Consensus 264 ~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~ek-------i~~L~e~l~aL~ 320 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEK-------INRLTEQLDALR 320 (717)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 889999999888888888888888888888888765555544444 555555555554
No 454
>PF03885 DUF327: Protein of unknown function (DUF327); InterPro: IPR005585 The proteins in this family are around 140-170 residues in length. The proteins contain many conserved residues, with the most conserved motifs found in the central and C-terminal region. The function of these proteins is unknown. ; PDB: 2P61_A 2QUP_A.
Probab=24.64 E-value=3.4e+02 Score=27.69 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=54.5
Q ss_pred CCCCcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhh-----------hhHHHH
Q 001361 852 LASPKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQE--IELERTTRQLKEALAVAGEETAKC-----------RAAKDV 917 (1092)
Q Consensus 852 ~~~~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~--~ei~~~~~~~~ea~~~a~ee~~k~-----------~~ake~ 917 (1092)
.+|++.+.+.-++. .+|+.+|-.++...-+++..-- .+|.++++-|++=+..|...+=+. .---.+
T Consensus 27 ~~F~~~l~~~~~~~~~e~L~~Ll~~I~~~G~~L~~~~t~~~l~~YK~~Vk~Fl~~~v~~~~~l~~~~~~~~~g~~k~y~i 106 (147)
T PF03885_consen 27 SSFSDVLEQQEEEKSEEELQELLDEIDEQGERLAESPTLENLKRYKELVKQFLKEVVKNGYKLEEESSWDRRGRQKVYTI 106 (147)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHT-----H-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHheeehcccCCccCCCceeee
Confidence 44666664433333 6778888777777666655433 788889988887666555533222 234467
Q ss_pred HHHHHHHHHHHHhhCCCc
Q 001361 918 IKSLTAQLKDMAEMLPVG 935 (1092)
Q Consensus 918 ik~l~~qlk~~~e~lp~~ 935 (1092)
|+-+...|.+|++.|-.+
T Consensus 107 V~~ID~kL~~L~~~ll~~ 124 (147)
T PF03885_consen 107 VKVIDEKLDELTDELLSE 124 (147)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHc
Confidence 889999999999876554
No 455
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=24.61 E-value=4.2e+02 Score=26.91 Aligned_cols=34 Identities=18% Similarity=0.428 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTRQLKEALA 902 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~ 902 (1092)
+.+|+.+...|.++.+.++.++.++.++++++..
T Consensus 3 i~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~ 36 (171)
T PF03357_consen 3 ILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIK 36 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888888888888888888777654
No 456
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.53 E-value=4.8e+02 Score=26.74 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
.++...|..|+....+..+.++.||.+....++. +-+..+.-+.-|+.++.++++..+++
T Consensus 26 l~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~-------d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 26 LDRKRALERQLAANLHQLELLQEEIEKEEAALER-------DYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566666667777777777777777664443332 33345557788888888888888885
No 457
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=24.40 E-value=5.2e+02 Score=27.20 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETA 909 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~ 909 (1092)
.+|..+++.|...+..+ .+.+|+..+++.++-+.-|.+|+.
T Consensus 67 l~~Ae~~~~eA~~~l~e---~e~~L~~A~~ea~~Ii~~A~~~a~ 107 (184)
T PRK13455 67 LEEARALREEAQTLLAS---YERKQREVQEQADRIVAAAKDEAQ 107 (184)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554444 334455555555555555444443
No 458
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=24.33 E-value=1.9e+02 Score=31.50 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=21.6
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 900 ALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 900 a~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
.+.-|.+|-.. ||++...|.+||++ -||.
T Consensus 140 KL~kAe~el~~---Ak~~ye~lN~~L~~---ELP~ 168 (211)
T cd07612 140 KIAKAEEEFNR---AQVVFEDINRELRE---ELPI 168 (211)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHH---HHHH
Confidence 44556666555 99999999999996 5665
No 459
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=24.32 E-value=7e+02 Score=25.87 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQ 886 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~ 886 (1092)
..+..+++++.+.+....+.+
T Consensus 50 L~~Ae~~k~eAe~l~a~ye~~ 70 (155)
T PRK06569 50 ITQADTLTIEVEKLNKYYNEE 70 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666554443
No 460
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=24.32 E-value=1.6e+03 Score=28.95 Aligned_cols=123 Identities=18% Similarity=0.129 Sum_probs=66.4
Q ss_pred EEEEEeCCC--eEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCCeEEEEecCCceEEEEEEeeecCCCCcc
Q 001361 414 VSSVSCGPW--HTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSN 491 (1092)
Q Consensus 414 I~~IscG~~--Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLte~~~~~s~~~~ 491 (1092)
|..++.|.. .++++...|.-.++|....|||+.-+.....+--+-+.- -.++..++-...-.++.+-
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH-~~~i~~l~YSpDgq~iaTG---------- 368 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH-SDRITSLAYSPDGQLIATG---------- 368 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc-ccceeeEEECCCCcEEEec----------
Confidence 555566644 466677778888999888888876443322211111100 0134444444443344431
Q ss_pred CCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCcEEEEEecCCcEEEEeCCCC
Q 001361 492 CSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVY 557 (1092)
Q Consensus 492 ~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLt~dG~Vy~wG~N~~ 557 (1092)
..||+|-.|-... |-+ .-+.-+.-.....+++..-.+..+...-||.|-+|--..|
T Consensus 369 ~eDgKVKvWn~~S-gfC---------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 369 AEDGKVKVWNTQS-GFC---------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred cCCCcEEEEeccC-ceE---------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 2577777775422 100 0011111122345666666777777888999999986655
No 461
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=24.24 E-value=3e+02 Score=28.98 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELER 892 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~ 892 (1092)
-+||.+|..+......+....=.+|+.
T Consensus 81 A~eir~LA~~t~~~~~~I~~~i~~i~~ 107 (213)
T PF00015_consen 81 ADEIRKLAEQTSESAKEISEIIEEIQE 107 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHhhhhh
Confidence 455555555555444444443333333
No 462
>COG5490 Uncharacterized conserved protein [Function unknown]
Probab=24.22 E-value=4.1e+02 Score=27.04 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHH--hhhhhhhHHHHHHHHHHHHHHHHhhCC
Q 001361 893 TTRQLKEALAVAGE--ETAKCRAAKDVIKSLTAQLKDMAEMLP 933 (1092)
Q Consensus 893 ~~~~~~ea~~~a~e--e~~k~~~ake~ik~l~~qlk~~~e~lp 933 (1092)
.+|.++-|+.-|.| |.+ +|+++|+||-|.+..++-.|++-
T Consensus 114 ark~~Eaaveqa~~~qe~a-rks~~es~kplk~r~e~Ame~ik 155 (158)
T COG5490 114 ARKSFEAAVEQAKEVQELA-RKSAEESIKPLKARIEKAMEEIK 155 (158)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHh
Confidence 34444444444443 223 58899999999998887666653
No 463
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=23.86 E-value=5.8e+02 Score=26.55 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 910 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k 910 (1092)
.+|..+++.|...+..+. +.+|+..+++.++-+.-|.+|+.+
T Consensus 56 l~~Ae~~~~eA~~~~~e~---e~~l~~a~~ea~~ii~~A~~ea~~ 97 (173)
T PRK13460 56 INKASELRLEAEALLKDY---EARLNSAKDEANAIVAEAKSDALK 97 (173)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666665555543 344444444444444444444443
No 464
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=23.74 E-value=3.2e+02 Score=37.40 Aligned_cols=8 Identities=50% Similarity=0.721 Sum_probs=3.6
Q ss_pred EcCCCccc
Q 001361 1035 ALPGGLKD 1042 (1092)
Q Consensus 1035 ~~~~g~~~ 1042 (1092)
.|.||.|-
T Consensus 1066 ~LSGGEKs 1073 (1163)
T COG1196 1066 LLSGGEKS 1073 (1163)
T ss_pred hcCCcHHH
Confidence 34444443
No 465
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=23.74 E-value=2.7e+02 Score=25.49 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRK 882 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~ 882 (1092)
||..++..+..++.+
T Consensus 8 ~v~~i~~~i~~i~~~ 22 (103)
T PF00804_consen 8 EVQEIREDIDKIKEK 22 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444333333
No 466
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=23.73 E-value=6.5e+02 Score=26.35 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCC
Q 001361 896 QLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLP 933 (1092)
Q Consensus 896 ~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp 933 (1092)
.+.+++.-..+-+....+.-+-+.....+|++++++|-
T Consensus 167 ~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~ 204 (213)
T PF00015_consen 167 QINESIEEISEISEQISASSEEIAEAAEELSESAEELQ 204 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555555555667777776663
No 467
>PRK00295 hypothetical protein; Provisional
Probab=23.64 E-value=3.5e+02 Score=23.93 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 872 LRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 872 l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
+.+.+..|+.+.-.|+.-|+.+.+.|-+ --..|..|..||+.|.+||
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~--------------Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVE--------------QQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
No 468
>PRK10698 phage shock protein PspA; Provisional
Probab=23.64 E-value=2.6e+02 Score=30.65 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEA 900 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea 900 (1092)
-+.+..|+.|+.......+.+...|++++.+++++
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ea 132 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSET 132 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666666554
No 469
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.59 E-value=3.7e+02 Score=28.48 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHH
Q 001361 876 VEELTRKSQLQEIELERTTRQLKEALAVAGE-ETAKCRAAKDVIKSLTAQLKD 927 (1092)
Q Consensus 876 v~~L~~~~~~~~~ei~~~~~~~~ea~~~a~e-e~~k~~~ake~ik~l~~qlk~ 927 (1092)
+-.|-++...++.+++..++|.+++..-+.+ +.++-+..++-|+.|..+|+.
T Consensus 120 ~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 120 VHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 3455566666666666666666655433321 222233345555555555544
No 470
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=23.57 E-value=2.6e+02 Score=27.35 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL 901 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~ 901 (1092)
.+...+|+.|++.|.++...++..+.++++-+ +++
T Consensus 5 ~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~-~~L 39 (126)
T TIGR00293 5 AAELQILQQQVESLQAQIAALRALIAELETAI-ETL 39 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 45677888888888888888888888875554 444
No 471
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=23.50 E-value=6.6e+02 Score=24.92 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 910 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k 910 (1092)
.++..+++.|...+..+. +.+|+..+++.++-..-|.+|+.+
T Consensus 45 l~~Ae~~~~ea~~~~~~~---e~~L~~a~~ea~~i~~~a~~~a~~ 86 (140)
T PRK07353 45 RAEAKERLAEAEKLEAQY---EQQLASARKQAQAVIAEAEAEADK 86 (140)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555443 334444444444444444444433
No 472
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=23.49 E-value=1.9e+02 Score=24.08 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTR 895 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~ 895 (1092)
.+++..|..+|..|+...+.+..+|..+++
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667777777777777777777777776654
No 473
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=23.47 E-value=1.3e+02 Score=24.60 Aligned_cols=22 Identities=9% Similarity=0.240 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001361 876 VEELTRKSQLQEIELERTTRQL 897 (1092)
Q Consensus 876 v~~L~~~~~~~~~ei~~~~~~~ 897 (1092)
|++|++|.+.++.+|+.++.-+
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~f 22 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAF 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999998876543
No 474
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=23.43 E-value=1.9e+02 Score=31.19 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 001361 910 KCRAAKDVIKSLTAQLKD 927 (1092)
Q Consensus 910 k~~~ake~ik~l~~qlk~ 927 (1092)
+...|++....|..+||+
T Consensus 157 ~l~~a~~~y~~lN~~Lk~ 174 (216)
T cd07599 157 KLEEAKEEYEALNELLKS 174 (216)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345589999999999986
No 475
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=23.35 E-value=4.9e+02 Score=25.44 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=50.0
Q ss_pred ecCCCceeEeEEEeCCCCeEEEecCC-----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC-ceeEEEe
Q 001361 32 GRRGKPKFCPFRLANDESILIWISGK-----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLIC 105 (1092)
Q Consensus 32 ~~~~kp~~r~f~L~~d~~~l~W~~~k-----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rsLDLia 105 (1092)
....-.+.|+|.|=+..-.+.=.+++ -++.++|+.|.=.+.-. .+.....|=|.-.. ..+=++|
T Consensus 23 ~~~qe~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd----------~e~~~~aFeI~G~li~~i~v~C 92 (111)
T cd01225 23 GAGEEKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLED----------TEALKNAFEISGPLIERIVVVC 92 (111)
T ss_pred CCccccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEechHh----------ccCccceEEEeccCcCcEEEEe
Confidence 34455678888887762222222222 24557776654332111 12224677766444 7888999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 001361 106 KDKDEAEVWFTGLKALI 122 (1092)
Q Consensus 106 ~~~~e~~~Wv~gL~~Li 122 (1092)
.+.+|++.|+.-|+..+
T Consensus 93 ~~~~e~~~Wl~hL~~~~ 109 (111)
T cd01225 93 NNPQDAQEWVELLNANN 109 (111)
T ss_pred CCHHHHHHHHHHHHhhc
Confidence 99999999999998764
No 476
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.34 E-value=2.8e+02 Score=37.14 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCcc
Q 001361 875 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVGA 936 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~~ 936 (1092)
|.+-|..+-+..-..++.++.++.....-..|...-..+-|++|.++..++++..+.||.-.
T Consensus 508 el~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~ 569 (1293)
T KOG0996|consen 508 ELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLR 569 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH
Confidence 44455555555556666667777776777777777777889999999999999998888754
No 477
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=23.28 E-value=1.3e+03 Score=27.25 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=43.0
Q ss_pred EEEEEecCceEEEEEcCCe-EEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCC-e--------EEEEEeCC
Q 001361 307 VQNIACGGRHAALVTKQGE-VFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEH-H--------TCAVTLSG 376 (1092)
Q Consensus 307 I~~Ia~G~~hs~~Lt~dG~-Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~-h--------s~aLT~dG 376 (1092)
+..|..|...-.++..||+ +|+. ...+-++-+|...+.. ..++.-....+..|..|.. + .++|+.||
T Consensus 40 ~g~i~~G~~P~~~~spDg~~lyva-~~~~~R~~~G~~~d~V--~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dg 116 (352)
T TIGR02658 40 LGMTDGGFLPNPVVASDGSFFAHA-STVYSRIARGKRTDYV--EVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDN 116 (352)
T ss_pred EEEEEccCCCceeECCCCCEEEEE-eccccccccCCCCCEE--EEEECccCcEEeEEccCCCchhhccCccceEEECCCC
Confidence 3457777655556888876 5544 3444444555544432 2222223345666666555 3 89999999
Q ss_pred c-EEEeCCc
Q 001361 377 D-MYTWGGS 384 (1092)
Q Consensus 377 ~-Vy~wG~n 384 (1092)
+ ||..-..
T Consensus 117 k~l~V~n~~ 125 (352)
T TIGR02658 117 KTLLFYQFS 125 (352)
T ss_pred CEEEEecCC
Confidence 6 7776533
No 478
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=23.21 E-value=4.2e+02 Score=30.64 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001361 878 ELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 878 ~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
.|+.+...++.+|+..++++.+
T Consensus 208 ~lk~~l~~~~~ei~~~~~~l~e 229 (312)
T smart00787 208 RAKEKLKKLLQEIMIKVKKLEE 229 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 479
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=23.19 E-value=1.6e+02 Score=27.83 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
..++.+|+++++.|+.+.+.++.+++.++++++
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668888888888888888888888887777664
No 480
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=23.14 E-value=3.3e+02 Score=25.77 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIE 889 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~e 889 (1092)
.+..++..-+..|+..++.++.+
T Consensus 35 ~kY~~~~~~~~~l~~~~~~l~~k 57 (99)
T PF10046_consen 35 LKYKKMKDIAAGLEKNLEDLNQK 57 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 481
>PHA01754 hypothetical protein
Probab=23.05 E-value=91 Score=26.67 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhhh------hhHHHHHHHHH
Q 001361 898 KEALAVAGEETAKC------RAAKDVIKSLT 922 (1092)
Q Consensus 898 ~ea~~~a~ee~~k~------~~ake~ik~l~ 922 (1092)
.=||++|.||.+-- +.|-||||.+.
T Consensus 24 DLamaLATee~EeVRkSevfqkA~EViKvvk 54 (69)
T PHA01754 24 DLTMALATEDKEEVRKSEVFQKALEVVKVVK 54 (69)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 45889999887643 46888998754
No 482
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=23.03 E-value=3.6e+02 Score=31.75 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhhCCC
Q 001361 915 KDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 915 ke~ik~l~~qlk~~~e~lp~ 934 (1092)
++-+..+..+|.++..+|-.
T Consensus 245 ~~~l~~~~~~l~~~~~~l~~ 264 (423)
T TIGR01843 245 LEELTEAQARLAELRERLNK 264 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555543
No 483
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=23.01 E-value=2.7e+02 Score=30.35 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEA 900 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea 900 (1092)
.+.+..|+.|+..++...+.+...|.+++++++++
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555556666666555553
No 484
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.97 E-value=3.6e+02 Score=24.13 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 874 AQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 874 ~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
+.+..|+.+.-.|+.-|+.+.+-|-+ --..|..|+.||+.|.+||-.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~--------------Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTA--------------HEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555544433 233567788889988888844
No 485
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.84 E-value=37 Score=40.90 Aligned_cols=52 Identities=23% Similarity=0.432 Sum_probs=36.3
Q ss_pred cccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhhc
Q 001361 658 QSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTK 718 (1092)
Q Consensus 658 ~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~~ 718 (1092)
...|..|-.+..+-.+ -+||.+||-.|-=...... ..+..+-|.-|+..+.-
T Consensus 186 ~~~CPICL~~~~~p~~----t~CGHiFC~~CiLqy~~~s-----~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVR----TNCGHIFCGPCILQYWNYS-----AIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccc----cccCceeeHHHHHHHHhhh-----cccCCccCCchhhhccc
Confidence 4579999877776654 3599999999943332222 24556779999988765
No 486
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.78 E-value=3.9e+02 Score=31.98 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELER 892 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~ 892 (1092)
=+.+|..|++.|.|+|+..+.++..
T Consensus 241 ~~~~L~kqie~L~qeie~~~~~~r~ 265 (439)
T KOG2911|consen 241 ARAKLAKQIEFLEQEIEKSKEKLRQ 265 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555544444433
No 487
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=22.77 E-value=3.4e+02 Score=28.23 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
..|..+|+.|+..|.++.+.++.|++++.+++.
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888888888888888887777664
No 488
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.74 E-value=2e+02 Score=35.68 Aligned_cols=24 Identities=29% Similarity=0.142 Sum_probs=15.2
Q ss_pred EEEEEEcCCEE-EEEEcCCeEEEEe
Q 001361 582 VEEIACGDYHV-AVLTSRTEVYTWG 605 (1092)
Q Consensus 582 I~~Ia~G~~Hs-laLT~dG~Vy~WG 605 (1092)
|+.|--|-... ++|+-||+|.---
T Consensus 246 IVGIDPGiTtgiAvldldGevl~~~ 270 (652)
T COG2433 246 IVGIDPGITTGIAVLDLDGEVLDLE 270 (652)
T ss_pred EEEeCCCceeeEEEEecCCcEEeee
Confidence 66676666554 4557788776544
No 489
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=22.70 E-value=5.6e+02 Score=22.95 Aligned_cols=59 Identities=24% Similarity=0.380 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 871 KLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 871 ~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
+|.+=.+.|.+..+.+..+.+..=..++--...+..|.+ +-++=++.|+-|+..|.+.|
T Consensus 7 qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a---~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 7 QLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENA---ALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777777776666665555555544 57888999999999998765
No 490
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=22.65 E-value=1.8e+02 Score=31.54 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 911 CRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 911 ~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
.+.||++-..|.+||++ -||.
T Consensus 148 l~~Ak~~Ye~lN~~L~~---ELP~ 168 (211)
T cd07588 148 LQQAKKVYEELNTELHE---ELPA 168 (211)
T ss_pred HHHHHHHHHHHHHHHHH---HhHH
Confidence 33499999999999986 5554
No 491
>PRK14127 cell division protein GpsB; Provisional
Probab=22.53 E-value=1.8e+02 Score=28.36 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=31.1
Q ss_pred Ccchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 855 PKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 855 ~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
...++|+.=.. .+++..|..++..|+++.+.++.+|..++.++..
T Consensus 24 d~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 24 DQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455553333 7777777778888888888888888877777764
No 492
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=22.44 E-value=1.8e+02 Score=21.11 Aligned_cols=25 Identities=40% Similarity=0.345 Sum_probs=21.2
Q ss_pred CCCEEEEEEcCCEEEEEEcCCeEEE
Q 001361 579 KNFVEEIACGDYHVAVLTSRTEVYT 603 (1092)
Q Consensus 579 ~~~I~~Ia~G~~HslaLT~dG~Vy~ 603 (1092)
++.|..|++|....++.|+.+-|-.
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEEe
Confidence 3679999999999999999886644
No 493
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=22.33 E-value=1.4e+03 Score=27.34 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=19.4
Q ss_pred CCEEEEEEc--CCEEEEEEcCCeEEEEe
Q 001361 580 NFVEEIACG--DYHVAVLTSRTEVYTWG 605 (1092)
Q Consensus 580 ~~I~~Ia~G--~~HslaLT~dG~Vy~WG 605 (1092)
..|.+|+.. ..|.++++.+|.+|..=
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVS 244 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence 457777766 45778889999999863
No 494
>PRK14149 heat shock protein GrpE; Provisional
Probab=22.30 E-value=4.2e+02 Score=28.41 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAV 903 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~ 903 (1092)
.+.+..|++++..|+.+.-..-+|++.++|..+.-...
T Consensus 42 ~~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~ 79 (191)
T PRK14149 42 GEIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSM 79 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888899888888888888888888777654333
No 495
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=22.25 E-value=2.7e+02 Score=29.23 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 001361 870 IKLRAQVEELTRKSQ 884 (1092)
Q Consensus 870 ~~l~~qv~~L~~~~~ 884 (1092)
..|+++.+.|+++.+
T Consensus 76 ~~lr~~~e~L~~eie 90 (177)
T PF07798_consen 76 AELRSENEKLQREIE 90 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 496
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=22.24 E-value=2e+02 Score=26.88 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
+.+++.|...|..+-+++..|++-.+++++.
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888888888777777776
No 497
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=22.16 E-value=6.7e+02 Score=25.76 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEET 908 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~ 908 (1092)
.++..+.+.++..+..+. +.+|...+++.++.+.-|.+|+
T Consensus 48 l~~Ae~~~~ea~~~~~e~---e~~l~~A~~ea~~ii~~A~~~a 87 (164)
T PRK14473 48 LRDAEKVREQLANAKRDY---EAELAKARQEAAKIVAQAQERA 87 (164)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444443 3333333344443333333333
No 498
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=22.14 E-value=7.5e+02 Score=24.58 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001361 888 IELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLK 926 (1092)
Q Consensus 888 ~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk 926 (1092)
.+|+.-.+.+++|=.-=..|.-|+-++-+-|..|-.++.
T Consensus 31 ~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~ 69 (132)
T PF07926_consen 31 EDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQ 69 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444333333333333
No 499
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=22.05 E-value=2.6e+02 Score=29.09 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQL 897 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~ 897 (1092)
..|+.|+.++|..|+|=+-..+.....+++||
T Consensus 35 r~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 35 RSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56888888888888888888888777777776
No 500
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.05 E-value=5.2e+02 Score=27.93 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---HHH
Q 001361 840 PRATTPTPTLSGLASPKIVVDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRA---AKD 916 (1092)
Q Consensus 840 ~rs~~~~~~~~~~~~~~~~~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~---ake 916 (1092)
.+..+|.|++ .|++-++++-+..=-++.+.|=..||+-.+|++.++.-|+.-.-+-.+ |||
T Consensus 3 l~~~~~~pdP----------------KEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKE 66 (227)
T KOG3229|consen 3 LFGKTPGPDP----------------KEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKE 66 (227)
T ss_pred ccccCCCCCh----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q ss_pred HHHH
Q 001361 917 VIKS 920 (1092)
Q Consensus 917 ~ik~ 920 (1092)
++.+
T Consensus 67 iv~s 70 (227)
T KOG3229|consen 67 IVQS 70 (227)
T ss_pred HHHH
Done!