Query 001361
Match_columns 1092
No_of_seqs 800 out of 3066
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 00:12:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 100.0 2.2E-66 7.4E-71 604.8 38.6 372 254-651 12-388 (389)
2 4d9s_A UVB-resistance protein 100.0 7.3E-64 2.5E-68 586.8 42.6 357 248-630 20-379 (406)
3 1a12_A RCC1, regulator of chro 100.0 2E-62 6.9E-67 575.6 44.8 368 253-651 18-410 (413)
4 3mvd_K Regulator of chromosome 100.0 5.4E-62 1.8E-66 573.4 46.5 370 249-650 29-418 (423)
5 3of7_A Regulator of chromosome 100.0 4.5E-62 1.6E-66 582.6 42.6 370 255-650 22-450 (473)
6 4d9s_A UVB-resistance protein 100.0 1.5E-59 5.2E-64 550.2 42.8 330 304-649 15-346 (406)
7 3kci_A Probable E3 ubiquitin-p 100.0 2.2E-56 7.6E-61 520.5 32.9 327 309-650 5-335 (389)
8 3mvd_K Regulator of chromosome 100.0 3.6E-54 1.2E-58 506.8 33.3 321 304-650 23-364 (423)
9 1a12_A RCC1, regulator of chro 100.0 1E-52 3.5E-57 493.2 36.1 329 245-601 60-412 (413)
10 3of7_A Regulator of chromosome 100.0 2.6E-53 8.7E-58 507.1 27.6 325 306-650 11-395 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 3.7E-48 1.3E-52 432.0 31.8 248 306-650 25-272 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 2.8E-42 9.5E-47 384.6 27.3 248 248-602 28-276 (282)
13 1mai_A Phospholipase C delta-1 99.9 1.2E-23 4.1E-28 207.4 10.7 114 13-127 4-125 (131)
14 3ohm_B 1-phosphatidylinositol- 99.5 5.6E-14 1.9E-18 175.8 12.0 107 19-125 18-141 (885)
15 2zkm_X 1-phosphatidylinositol- 99.5 7E-14 2.4E-18 175.0 11.9 108 19-126 14-138 (799)
16 1x4u_A Zinc finger, FYVE domai 99.5 2.3E-14 7.8E-19 129.8 5.2 73 649-721 5-81 (84)
17 3qr0_A Phospholipase C-beta (P 99.5 7.4E-14 2.5E-18 173.8 10.6 107 20-126 20-145 (816)
18 2yw8_A RUN and FYVE domain-con 99.4 1.2E-13 4.2E-18 124.3 3.6 73 645-721 6-78 (82)
19 1z2q_A LM5-1; membrane protein 99.4 1.2E-13 4.1E-18 125.0 2.4 69 649-719 12-80 (84)
20 3a98_B Engulfment and cell mot 99.3 2.3E-12 7.9E-17 135.0 11.3 109 16-124 26-151 (203)
21 3t7l_A Zinc finger FYVE domain 99.3 3.7E-13 1.3E-17 123.2 2.7 70 649-722 11-80 (90)
22 1joc_A EEA1, early endosomal a 99.3 7.3E-13 2.5E-17 128.7 3.8 65 649-717 60-124 (125)
23 1vfy_A Phosphatidylinositol-3- 99.2 1.1E-12 3.8E-17 115.4 1.7 66 649-719 5-70 (73)
24 1wfk_A Zinc finger, FYVE domai 99.2 5.8E-12 2E-16 114.6 5.4 64 655-721 6-69 (88)
25 3zyq_A Hepatocyte growth facto 99.1 1.3E-11 4.5E-16 132.3 1.8 68 649-721 158-225 (226)
26 1dvp_A HRS, hepatocyte growth 99.1 2.5E-11 8.6E-16 129.9 2.0 65 649-718 155-219 (220)
27 1y02_A CARP2, FYVE-ring finger 99.0 4.6E-11 1.6E-15 114.3 1.9 59 651-719 12-70 (120)
28 3mpx_A FYVE, rhogef and PH dom 98.9 2.4E-10 8.2E-15 134.5 0.0 67 649-718 366-432 (434)
29 2lul_A Tyrosine-protein kinase 97.8 0.00012 4.2E-09 74.2 13.1 85 38-128 37-126 (164)
30 1v5u_A SBF1, SET binding facto 97.6 0.00015 5.3E-09 68.3 9.3 94 28-124 14-112 (117)
31 1fao_A Dual adaptor of phospho 97.5 0.00041 1.4E-08 66.5 10.3 93 23-128 20-117 (126)
32 2dhk_A TBC1 domain family memb 97.5 0.00072 2.5E-08 64.4 11.7 88 27-126 13-107 (119)
33 2d9v_A Pleckstrin homology dom 97.5 0.00064 2.2E-08 65.9 11.3 95 28-124 14-115 (130)
34 2d9x_A Oxysterol binding prote 97.4 0.00054 1.8E-08 65.3 9.1 92 23-128 10-109 (120)
35 2cod_A Centaurin-delta 1; ARF 97.3 0.0012 4.1E-08 62.1 10.8 86 23-125 10-101 (115)
36 2rlo_A Centaurin-gamma 1; spli 97.3 0.0016 5.4E-08 62.9 11.6 86 37-124 22-125 (128)
37 2dn6_A KIAA0640 protein; PH do 97.2 0.00085 2.9E-08 63.0 8.9 94 23-128 10-108 (115)
38 1eaz_A Tandem PH domain contai 97.2 0.001 3.4E-08 63.5 9.2 96 22-127 15-115 (125)
39 1pls_A Pleckstrin homology dom 97.2 0.002 7E-08 60.3 10.9 88 28-126 11-104 (113)
40 1btk_A Bruton'S tyrosine kinas 97.1 0.0024 8.2E-08 65.0 11.6 87 37-125 24-134 (169)
41 1x05_A Pleckstrin; PH domain, 97.1 0.0021 7.1E-08 61.8 9.9 98 23-126 20-123 (129)
42 1v89_A Hypothetical protein KI 97.0 0.0033 1.1E-07 59.0 10.6 92 23-125 10-114 (118)
43 1v5p_A Pleckstrin homology dom 97.0 0.0041 1.4E-07 60.1 11.1 91 26-123 19-120 (126)
44 2i5f_A Pleckstrin; PH domain, 96.9 0.004 1.4E-07 57.7 9.8 94 23-122 9-108 (109)
45 1wgq_A FYVE, rhogef and PH dom 96.9 0.0053 1.8E-07 57.1 10.6 89 23-124 10-104 (109)
46 2rsg_A Collagen type IV alpha- 96.8 0.0057 2E-07 55.3 10.0 78 27-120 6-91 (94)
47 1wg7_A Dedicator of cytokinesi 96.8 0.0073 2.5E-07 59.6 11.3 78 37-125 40-126 (150)
48 1u5d_A SKAP55, SRC kinase-asso 96.7 0.0042 1.4E-07 57.1 8.8 80 36-124 22-106 (108)
49 1fgy_A GRP1; PH domain, signal 96.7 0.0078 2.7E-07 57.2 10.2 89 23-125 7-122 (127)
50 1x1g_A Pleckstrin 2; PH domain 96.6 0.0036 1.2E-07 60.0 7.7 98 22-124 19-125 (129)
51 2d9y_A Pleckstrin homology dom 96.5 0.014 4.9E-07 54.6 11.0 89 23-124 13-110 (117)
52 3aj4_A Pleckstrin homology dom 96.5 0.0072 2.5E-07 56.4 8.8 94 28-123 11-111 (112)
53 1u5f_A SRC-associated adaptor 96.5 0.012 4.2E-07 57.9 10.5 81 37-126 37-122 (148)
54 3rcp_A Pleckstrin homology dom 96.4 0.013 4.3E-07 53.8 9.7 84 27-125 4-95 (103)
55 1unq_A RAC-alpha serine/threon 96.4 0.0078 2.7E-07 57.4 8.0 96 23-127 10-114 (125)
56 1x1f_A Signal-transducing adap 96.3 0.015 5.2E-07 57.9 10.2 92 21-124 18-114 (149)
57 3tfm_A Myosin X; split PH doma 96.3 0.011 3.6E-07 63.2 9.7 74 37-124 79-156 (228)
58 1qqg_A IRS-1, insulin receptor 96.3 0.013 4.4E-07 64.0 10.3 82 34-126 20-115 (264)
59 2yry_A Pleckstrin homology dom 96.2 0.036 1.2E-06 52.3 11.8 89 23-122 24-119 (122)
60 1upq_A PEPP1; PH domain, phosp 96.2 0.04 1.4E-06 52.0 12.1 78 37-124 28-110 (123)
61 2cof_A Protein KIAA1914; PH do 96.2 0.016 5.4E-07 53.8 8.8 87 23-123 10-101 (107)
62 2dkp_A Pleckstrin homology dom 96.1 0.018 6.1E-07 54.9 9.3 91 22-123 22-119 (128)
63 2da0_A 130-kDa phosphatidylino 96.1 0.018 6.2E-07 54.1 8.8 88 23-126 12-104 (114)
64 1dyn_A Dynamin; signal transdu 96.0 0.02 6.8E-07 54.8 8.8 69 37-118 30-112 (125)
65 2rov_A RHO-associated protein 96.0 0.017 5.7E-07 55.1 8.3 83 37-123 20-115 (117)
66 2w2x_D 1-phosphatidylinositol- 95.9 0.026 9E-07 54.0 9.5 90 23-124 14-120 (124)
67 1u5e_A SRC-associated adaptor 95.8 0.046 1.6E-06 57.6 11.4 79 37-124 126-209 (211)
68 2y7b_A Actin-binding protein a 95.3 0.066 2.2E-06 51.4 9.7 81 36-126 22-131 (134)
69 3lju_X ARF-GAP with dual PH do 95.2 0.076 2.6E-06 61.1 11.5 91 27-124 274-373 (386)
70 1v88_A Oxysterol binding prote 95.1 0.14 4.8E-06 49.5 11.4 84 28-124 14-125 (130)
71 3cxb_B Pleckstrin homology dom 95.1 0.14 4.8E-06 48.0 10.9 75 38-124 21-102 (112)
72 2j59_M RHO-GTPase activating p 94.8 0.084 2.9E-06 53.0 9.2 76 37-125 29-113 (168)
73 1wjm_A Beta-spectrin III; PH d 94.6 0.098 3.3E-06 49.6 8.5 80 33-126 29-120 (123)
74 2zwa_A Leucine carboxyl methyl 94.5 2.3 7.9E-05 52.5 22.9 18 590-607 657-674 (695)
75 1btn_A Beta-spectrin; signal t 94.2 0.11 3.7E-06 47.5 7.6 71 37-120 23-105 (106)
76 1p22_A F-BOX/WD-repeat protein 94.2 9.6 0.00033 43.1 31.4 240 306-608 175-414 (435)
77 1wi1_A Calcium-dependent activ 94.1 0.16 5.3E-06 49.0 8.7 86 27-124 13-111 (126)
78 2coc_A FYVE, rhogef and PH dom 94.0 0.39 1.3E-05 45.2 11.3 87 27-123 13-106 (112)
79 2vrw_B P95VAV, VAV1, proto-onc 93.8 0.019 6.7E-07 66.4 2.1 42 651-692 350-392 (406)
80 1k3i_A Galactose oxidase precu 93.6 7.3 0.00025 47.4 24.7 73 537-611 457-534 (656)
81 3lju_X ARF-GAP with dual PH do 93.4 0.1 3.5E-06 60.0 7.1 89 23-122 148-245 (386)
82 2r09_A Cytohesin-3; autoinhibi 93.3 0.28 9.5E-06 55.6 10.4 86 27-125 218-330 (347)
83 2p0d_A RHO GTPase-activating p 92.8 0.49 1.7E-05 45.4 10.0 75 38-124 35-125 (129)
84 4gbf_A Phikz131; 7-bladed beta 92.6 0.15 5.3E-06 53.8 6.4 85 306-403 310-395 (400)
85 4a6h_A Phosphatidylinositol 4, 92.6 0.57 2E-05 44.6 10.0 95 23-122 8-117 (120)
86 4gbf_A Phikz131; 7-bladed beta 91.0 0.27 9.3E-06 52.0 6.0 69 465-558 310-378 (400)
87 1p22_A F-BOX/WD-repeat protein 90.6 26 0.00088 39.5 33.1 229 306-606 135-363 (435)
88 3u1c_A Tropomyosin alpha-1 cha 90.2 1.9 6.6E-05 39.7 10.5 63 866-928 36-98 (101)
89 1v61_A RAC/CDC42 guanine nucle 90.1 0.68 2.3E-05 44.9 7.7 91 24-126 31-129 (132)
90 2fjl_A 1-phosphatidylinositol- 90.0 1.1 3.6E-05 44.4 9.0 36 88-123 110-148 (150)
91 3a8p_A T-lymphoma invasion and 90.0 1.2 4.2E-05 48.2 10.6 77 38-126 40-127 (263)
92 3tca_A Amyloid beta A4 precurs 89.9 0.56 1.9E-05 51.1 7.9 89 28-122 174-275 (291)
93 3iv1_A Tumor susceptibility ge 89.3 2 6.8E-05 37.5 9.0 72 854-932 4-76 (78)
94 1dro_A Beta-spectrin; cytoskel 89.0 0.85 2.9E-05 43.0 7.4 38 87-124 82-120 (122)
95 2zwa_A Leucine carboxyl methyl 88.7 16 0.00054 45.0 20.6 18 421-438 441-459 (695)
96 2q13_A DCC-interacting protein 88.1 1.1 3.6E-05 51.3 8.9 75 37-124 297-376 (385)
97 2ovr_B FBW7, F-BOX/WD repeat p 87.7 40 0.0014 37.8 35.9 229 306-607 161-390 (445)
98 1jcd_A Major outer membrane li 86.8 2.2 7.4E-05 34.4 7.1 40 867-910 4-43 (52)
99 4h8s_A DCC-interacting protein 86.6 1.2 4.1E-05 51.4 8.1 75 38-125 321-400 (407)
100 3mq7_A Bone marrow stromal ant 85.7 1.4 4.7E-05 41.0 6.2 30 869-898 73-102 (121)
101 1zbd_B Rabphilin-3A; G protein 85.6 0.45 1.5E-05 46.3 3.2 54 656-715 53-107 (134)
102 3no0_A DNA gyrase subunit A; D 84.4 49 0.0017 35.7 24.3 230 316-607 3-245 (276)
103 3u59_A Tropomyosin beta chain; 83.4 7.3 0.00025 35.8 10.3 63 866-928 36-98 (101)
104 2zet_C Melanophilin; complex, 82.5 0.51 1.8E-05 46.9 2.2 50 657-715 67-117 (153)
105 2ovr_B FBW7, F-BOX/WD repeat p 82.4 68 0.0023 35.9 32.8 226 307-607 122-347 (445)
106 2yy0_A C-MYC-binding protein; 82.0 1.9 6.5E-05 34.9 5.0 33 866-898 18-50 (53)
107 3a2a_A Voltage-gated hydrogen 81.6 3.1 0.00011 33.4 5.8 34 867-900 18-51 (58)
108 3vmx_A Voltage-gated hydrogen 80.5 3.4 0.00012 32.4 5.6 31 869-899 13-43 (48)
109 2uvk_A YJHT; unknown function, 80.2 28 0.00095 38.2 15.8 17 421-438 110-126 (357)
110 4emc_A Monopolin complex subun 80.0 7.1 0.00024 39.6 9.4 63 862-924 15-80 (190)
111 1kd8_B GABH BLL, GCN4 acid bas 80.0 3 0.0001 30.5 4.7 33 867-899 1-33 (36)
112 3pp2_A RHO GTPase-activating p 79.3 12 0.00043 35.1 10.7 36 88-123 87-123 (124)
113 3ljm_A Coil Ser L9C; de novo d 79.1 2.4 8.1E-05 28.9 3.7 23 876-898 3-25 (31)
114 1k3i_A Galactose oxidase precu 79.0 10 0.00036 46.0 12.7 18 314-331 288-305 (656)
115 4aez_A CDC20, WD repeat-contai 76.8 95 0.0032 34.2 26.7 108 306-439 136-247 (401)
116 3hnw_A Uncharacterized protein 76.5 12 0.00041 36.4 9.7 64 866-929 67-130 (138)
117 3qne_A Seryl-tRNA synthetase, 75.9 5.9 0.0002 46.5 8.7 74 856-930 16-99 (485)
118 4aez_A CDC20, WD repeat-contai 75.2 1E+02 0.0035 33.9 27.5 107 307-439 96-204 (401)
119 3ii7_A Kelch-like protein 7; p 75.1 49 0.0017 35.2 15.5 17 367-384 48-64 (306)
120 1wle_A Seryl-tRNA synthetase; 74.9 8.4 0.00029 45.5 9.7 67 866-932 69-146 (501)
121 2eqb_B RAB guanine nucleotide 74.9 14 0.00046 33.7 8.8 47 882-928 48-95 (97)
122 3lss_A Seryl-tRNA synthetase; 74.1 7.4 0.00025 45.7 8.9 45 858-902 22-72 (484)
123 2pz1_A RHO guanine nucleotide 73.5 8.9 0.0003 44.7 9.6 87 34-128 347-445 (466)
124 3nmd_A CGMP dependent protein 73.5 7.6 0.00026 33.3 6.4 41 859-899 25-65 (72)
125 3sfz_A APAF-1, apoptotic pepti 73.4 1E+02 0.0036 39.7 20.7 58 314-384 1015-1073(1249)
126 3qwm_A Iqsec1, IQ motif and SE 73.1 13 0.00045 36.2 8.9 40 87-126 80-125 (140)
127 3na7_A HP0958; flagellar bioge 72.4 16 0.00055 39.1 10.5 68 866-936 110-177 (256)
128 1gxr_A ESG1, transducin-like e 72.1 99 0.0034 32.3 31.9 270 256-607 15-295 (337)
129 3tul_A Cell invasion protein S 70.9 10 0.00034 36.7 7.3 68 866-933 26-93 (158)
130 2eqb_B RAB guanine nucleotide 70.4 11 0.00038 34.2 7.1 32 868-899 6-37 (97)
131 1go4_E MAD1 (mitotic arrest de 70.4 13 0.00043 34.1 7.5 64 866-932 11-91 (100)
132 2lg1_A A-kinase anchor protein 70.3 8.5 0.00029 39.3 7.3 97 21-126 71-175 (185)
133 1xcg_A PDZ-rhogef, RHO guanine 70.2 12 0.00042 41.9 9.5 37 88-124 326-367 (368)
134 3ulb_A Target of rapamycin com 69.8 26 0.00087 33.1 9.7 75 38-124 28-115 (121)
135 3mq7_A Bone marrow stromal ant 69.7 20 0.00068 33.4 8.7 51 866-920 52-106 (121)
136 3p6a_A RHO guanine nucleotide 69.0 8.1 0.00028 43.6 7.7 41 86-126 330-374 (377)
137 3ky9_A Proto-oncogene VAV; cal 68.9 8.9 0.00031 46.2 8.4 92 25-126 410-510 (587)
138 3t06_A PDZ-rhogef, RHO guanine 68.5 17 0.00057 41.7 10.2 41 87-127 367-412 (418)
139 2d9z_A Protein kinase C, NU ty 68.1 44 0.0015 31.9 11.1 90 27-123 13-123 (129)
140 3odt_A Protein DOA1; ubiquitin 67.9 1.2E+02 0.004 31.4 27.9 186 305-555 105-295 (313)
141 3swk_A Vimentin; cytoskeleton, 67.8 15 0.00051 32.8 7.4 54 868-921 1-54 (86)
142 3odw_A RHO guanine nucleotide 67.4 20 0.00069 42.7 10.9 41 86-126 483-527 (536)
143 3hk0_A Growth factor receptor- 66.8 14 0.00049 39.6 8.6 87 33-126 144-243 (256)
144 2d9w_A Docking protein 2; PH d 66.8 27 0.00092 33.3 9.3 96 22-124 13-122 (127)
145 1ic2_A Tropomyosin alpha chain 65.8 21 0.00073 31.2 8.0 41 866-906 33-73 (81)
146 3ky9_A Proto-oncogene VAV; cal 65.0 2.3 8E-05 51.4 2.1 48 639-691 515-563 (587)
147 1kd8_A GABH AIV, GCN4 acid bas 64.9 7.9 0.00027 28.3 3.9 33 867-899 1-33 (36)
148 1ses_A Seryl-tRNA synthetase; 64.7 16 0.00054 42.2 9.0 71 857-930 13-92 (421)
149 2dfk_A Collybistin II; DH doma 64.7 16 0.00054 41.8 9.0 86 34-127 270-367 (402)
150 2xzr_A Immunoglobulin-binding 64.7 13 0.00044 33.3 6.2 33 866-898 75-107 (114)
151 2vrw_B P95VAV, VAV1, proto-onc 64.1 13 0.00046 42.3 8.3 83 34-126 247-338 (406)
152 1kz7_A Guanine nucleotide exch 63.3 21 0.00072 39.9 9.6 40 88-127 288-329 (353)
153 3ii7_A Kelch-like protein 7; p 63.1 1.6E+02 0.0053 31.1 19.6 17 367-384 94-110 (306)
154 2dtc_A RAL guanine nucleotide 62.9 48 0.0016 31.6 10.5 38 88-125 75-114 (126)
155 2dq0_A Seryl-tRNA synthetase; 62.8 22 0.00074 41.5 9.7 64 867-931 31-98 (455)
156 3oja_B Anopheles plasmodium-re 62.8 32 0.0011 41.1 11.6 30 906-935 555-584 (597)
157 3tnu_B Keratin, type II cytosk 62.7 37 0.0013 32.4 9.7 25 870-894 46-70 (129)
158 3ol1_A Vimentin; structural ge 62.6 45 0.0015 31.4 10.2 56 868-923 42-104 (119)
159 3k26_A Polycomb protein EED; W 62.6 1.6E+02 0.0054 31.1 25.0 112 305-439 19-146 (366)
160 2dq0_A Seryl-tRNA synthetase; 62.6 16 0.00054 42.7 8.5 77 859-935 30-109 (455)
161 4ejn_A RAC-alpha serine/threon 62.4 8.4 0.00029 44.4 6.2 96 22-126 7-111 (446)
162 2uvk_A YJHT; unknown function, 62.0 88 0.003 34.0 14.3 18 366-384 110-127 (357)
163 1dbh_A Protein (human SOS 1); 61.8 13 0.00045 41.5 7.5 78 34-123 256-349 (354)
164 1wle_A Seryl-tRNA synthetase; 61.4 36 0.0012 40.1 11.3 77 859-935 69-156 (501)
165 1nty_A Triple functional domai 60.3 25 0.00087 38.4 9.4 76 35-124 219-309 (311)
166 2xn4_A Kelch-like protein 2; s 60.0 98 0.0033 32.7 13.9 17 367-384 101-117 (302)
167 4etp_A Kinesin-like protein KA 59.8 15 0.00052 42.1 7.6 58 870-934 6-63 (403)
168 3viq_B Mating-type switching p 59.8 12 0.0004 33.2 5.0 56 869-932 3-60 (85)
169 1gxr_A ESG1, transducin-like e 59.7 1.7E+02 0.0057 30.4 30.0 239 310-607 7-254 (337)
170 3ml4_A Protein DOK-7; tyrosine 59.6 22 0.00075 37.2 7.9 87 29-124 15-114 (224)
171 1q7f_A NHL, brain tumor CG1071 59.3 1.7E+02 0.0056 30.2 22.9 16 539-554 210-225 (286)
172 3qne_A Seryl-tRNA synthetase, 58.7 32 0.0011 40.3 10.1 76 859-934 32-110 (485)
173 2vpj_A Kelch-like protein 12; 58.5 1.8E+02 0.0062 30.4 17.5 17 367-384 105-121 (301)
174 3no2_A Uncharacterized protein 58.4 1.9E+02 0.0063 30.5 24.1 28 411-438 87-116 (276)
175 4asc_A Kelch repeat and BTB do 58.4 71 0.0024 34.2 12.5 16 422-438 91-106 (315)
176 2coa_A Protein kinase C, D2 ty 58.1 51 0.0017 31.4 9.4 90 26-122 12-118 (125)
177 3a7p_A Autophagy protein 16; c 57.4 31 0.001 33.9 8.0 75 859-933 60-145 (152)
178 3htk_A Structural maintenance 57.2 46 0.0016 27.1 8.1 53 866-925 4-56 (60)
179 2xyi_A Probable histone-bindin 56.9 2.4E+02 0.0082 31.3 24.8 261 306-607 130-409 (430)
180 2rgn_B RHOA/RAC/CDC42 exchange 56.8 26 0.0009 39.1 8.8 39 88-126 278-321 (354)
181 4gmv_A RAS-associated and plec 56.7 16 0.00054 39.9 6.6 84 33-125 170-268 (281)
182 3mmy_A MRNA export factor; mRN 56.7 2E+02 0.0067 30.3 21.7 195 356-608 39-247 (368)
183 2xn4_A Kelch-like protein 2; s 56.1 1.3E+02 0.0043 31.8 14.0 17 367-384 54-70 (302)
184 3zwl_B Eukaryotic translation 55.7 2E+02 0.007 30.2 27.2 119 306-439 76-205 (369)
185 4asc_A Kelch repeat and BTB do 55.7 1E+02 0.0035 32.9 13.3 17 367-384 91-107 (315)
186 3tnu_A Keratin, type I cytoske 54.9 37 0.0013 32.5 8.3 29 868-896 46-74 (131)
187 1txd_A RHO guanine nucleotide 54.0 23 0.00078 40.0 7.8 31 98-128 344-374 (385)
188 3u06_A Protein claret segregat 53.9 21 0.0007 41.2 7.3 55 866-934 9-63 (412)
189 3no0_A DNA gyrase subunit A; D 53.8 2.3E+02 0.0079 30.2 22.6 206 314-561 35-251 (276)
190 3odt_A Protein DOA1; ubiquitin 53.1 2E+02 0.007 29.4 31.9 228 306-607 61-295 (313)
191 1w1g_A HPDK1, 3-phosphoinositi 52.7 52 0.0018 32.4 8.9 86 23-124 47-140 (151)
192 1i84_S Smooth muscle myosin he 52.6 30 0.001 45.4 9.5 10 48-57 30-39 (1184)
193 3lss_A Seryl-tRNA synthetase; 52.5 43 0.0015 39.2 9.8 37 859-895 36-72 (484)
194 3nmd_A CGMP dependent protein 52.3 55 0.0019 28.1 7.7 51 869-933 21-71 (72)
195 3no2_A Uncharacterized protein 52.2 2.3E+02 0.0079 29.8 20.6 170 353-563 84-268 (276)
196 1zc3_B Exocyst complex protein 52.1 98 0.0033 28.6 10.5 88 23-123 10-107 (113)
197 3hnw_A Uncharacterized protein 51.9 91 0.0031 30.1 10.5 15 913-927 121-135 (138)
198 3ol1_A Vimentin; structural ge 51.5 98 0.0034 29.1 10.4 54 866-919 19-72 (119)
199 2ocy_A RAB guanine nucleotide 51.2 48 0.0016 32.7 8.4 47 885-931 83-130 (154)
200 3qh9_A Liprin-beta-2; coiled-c 51.1 30 0.001 30.2 6.0 25 866-890 25-49 (81)
201 2v4h_A NF-kappa-B essential mo 51.1 39 0.0013 31.3 7.1 44 855-898 22-72 (110)
202 3iyn_Q Protein IX, PIX, hexon- 50.9 32 0.0011 32.2 6.6 32 866-897 96-128 (140)
203 2v71_A Nuclear distribution pr 50.5 70 0.0024 32.6 9.7 57 868-927 50-113 (189)
204 2zqm_A Prefoldin beta subunit 50.2 95 0.0033 28.5 10.2 33 866-898 12-44 (117)
205 4h22_A Leucine-rich repeat fli 49.6 1.2E+02 0.004 27.8 9.9 58 870-934 26-83 (103)
206 3v1a_A Computational design, M 49.3 30 0.001 27.3 5.2 27 866-892 13-45 (48)
207 1zgk_A Kelch-like ECH-associat 48.6 1.5E+02 0.0051 31.5 13.0 17 367-384 114-130 (308)
208 3k26_A Polycomb protein EED; W 48.5 2.6E+02 0.0089 29.3 29.5 109 306-439 71-191 (366)
209 2woz_A Kelch repeat and BTB do 47.7 2.3E+02 0.0078 30.1 14.4 16 422-438 151-166 (318)
210 2fxo_A Myosin heavy chain, car 47.3 1.2E+02 0.0042 28.8 10.5 38 861-898 14-58 (129)
211 1m1j_C Fibrinogen gamma chain; 47.2 73 0.0025 36.5 10.4 23 862-884 36-58 (409)
212 4emc_A Monopolin complex subun 47.0 77 0.0026 32.1 9.2 58 866-923 26-83 (190)
213 3oja_A Leucine-rich immune mol 47.0 41 0.0014 39.2 8.7 53 866-932 434-486 (487)
214 3vbb_A Seryl-tRNA synthetase, 46.5 34 0.0012 40.5 7.7 48 855-902 16-69 (522)
215 3m91_A Proteasome-associated A 46.2 60 0.0021 26.0 6.6 27 871-897 13-39 (51)
216 3mpx_A FYVE, rhogef and PH dom 45.9 53 0.0018 37.5 9.3 84 29-126 251-340 (434)
217 2e7s_A RAB guanine nucleotide 45.3 63 0.0022 31.1 7.9 31 898-928 85-115 (135)
218 3htk_A Structural maintenance 45.3 93 0.0032 25.2 8.1 18 875-892 20-37 (60)
219 3mkq_A Coatomer beta'-subunit; 45.1 4.7E+02 0.016 31.3 25.9 231 306-608 15-259 (814)
220 1ic2_A Tropomyosin alpha chain 44.9 1.5E+02 0.0053 25.6 10.1 58 866-930 19-76 (81)
221 2aq5_A Coronin-1A; WD40 repeat 44.8 3.4E+02 0.012 29.5 26.4 234 310-604 40-295 (402)
222 1deb_A APC protein, adenomatou 44.7 91 0.0031 24.6 7.1 44 872-922 8-51 (54)
223 3oja_B Anopheles plasmodium-re 44.4 30 0.001 41.4 7.1 30 868-897 457-486 (597)
224 1i84_S Smooth muscle myosin he 44.3 48 0.0016 43.4 9.5 10 867-876 864-873 (1184)
225 1uii_A Geminin; human, DNA rep 43.8 54 0.0019 28.8 6.5 27 866-899 45-71 (83)
226 3tfm_A Myosin X; split PH doma 43.7 20 0.00068 37.6 4.8 32 88-119 194-225 (228)
227 3a8n_A TIAM-1, T-lymphoma inva 43.7 35 0.0012 37.1 6.8 36 88-123 88-124 (279)
228 1wt6_A Myotonin-protein kinase 43.6 50 0.0017 28.8 6.2 25 875-899 46-70 (81)
229 3cve_A Homer protein homolog 1 43.5 1.2E+02 0.0041 26.0 8.5 53 875-930 8-60 (72)
230 1fxk_A Prefoldin; archaeal pro 43.4 1.3E+02 0.0043 27.2 9.7 33 866-898 7-39 (107)
231 1v5m_A SH2 and PH domain-conta 43.2 1.1E+02 0.0039 29.3 9.2 83 35-124 41-131 (136)
232 3jsv_C NF-kappa-B essential mo 43.2 59 0.002 29.3 6.9 21 906-926 30-50 (94)
233 1ci6_A Transcription factor AT 42.5 43 0.0015 27.9 5.6 32 866-897 22-53 (63)
234 3na7_A HP0958; flagellar bioge 42.4 68 0.0023 34.2 8.8 24 878-901 94-117 (256)
235 3mmy_A MRNA export factor; mRN 41.6 3.3E+02 0.011 28.5 25.1 109 304-438 39-158 (368)
236 2dfs_A Myosin-5A; myosin-V, in 41.6 70 0.0024 41.4 10.2 22 874-895 984-1005(1080)
237 2qup_A BH1478 protein; structu 41.5 73 0.0025 31.1 8.1 84 852-935 25-122 (145)
238 2dgc_A Protein (GCN4); basic d 41.3 33 0.0011 28.6 4.8 33 866-898 29-61 (63)
239 3uc1_A DNA gyrase subunit A; D 41.3 3.9E+02 0.013 29.3 25.3 216 362-607 49-278 (327)
240 2dq3_A Seryl-tRNA synthetase; 41.0 49 0.0017 38.1 7.9 65 866-931 29-97 (425)
241 2aze_B Transcription factor E2 40.7 44 0.0015 30.9 6.0 35 867-901 6-40 (106)
242 4dci_A Uncharacterized protein 40.6 1.5E+02 0.0051 29.1 10.0 63 870-936 32-110 (150)
243 3i00_A HIP-I, huntingtin-inter 40.6 90 0.0031 29.5 8.2 25 875-899 41-65 (120)
244 2l3l_A Tubulin-specific chaper 40.6 41 0.0014 31.4 5.8 66 866-934 41-109 (111)
245 1go4_E MAD1 (mitotic arrest de 40.4 63 0.0021 29.5 6.7 27 866-892 18-44 (100)
246 2dfs_A Myosin-5A; myosin-V, in 39.4 85 0.0029 40.6 10.5 25 875-899 978-1002(1080)
247 2rrf_A Zinc finger FYVE domain 39.1 2.7E+02 0.0092 26.7 13.3 106 15-124 11-128 (141)
248 1g6u_A Domain swapped dimer; d 39.0 42 0.0014 25.1 4.3 36 858-893 8-46 (48)
249 4gkw_A Spindle assembly abnorm 38.7 1.6E+02 0.0054 27.9 9.2 34 859-892 48-85 (167)
250 2wq1_A General control protein 38.7 36 0.0012 24.5 3.8 30 869-898 2-31 (33)
251 3trt_A Vimentin; cytoskeleton, 38.6 1.6E+02 0.0055 25.1 9.0 58 869-928 11-68 (77)
252 1wfh_A Zinc finger (AN1-like) 38.4 15 0.00053 30.8 2.2 28 657-687 14-41 (64)
253 2ocy_A RAB guanine nucleotide 38.0 1.4E+02 0.0048 29.4 9.3 11 859-869 19-29 (154)
254 2hy6_A General control protein 37.8 38 0.0013 24.5 3.8 32 867-898 1-32 (34)
255 3c3f_A Alpha/beta peptide with 37.5 39 0.0013 24.4 3.8 33 867-899 1-33 (34)
256 2yy0_A C-MYC-binding protein; 37.2 25 0.00086 28.4 3.2 32 858-892 20-51 (53)
257 2wvr_A Geminin; DNA replicatio 37.0 72 0.0025 32.6 7.2 27 866-899 114-140 (209)
258 3zvr_A Dynamin-1; hydrolase, D 36.8 84 0.0029 39.0 9.4 74 34-118 555-640 (772)
259 3vkg_A Dynein heavy chain, cyt 36.6 82 0.0028 45.4 10.2 30 875-904 1935-1964(3245)
260 1wlq_A Geminin; coiled-coil; 2 36.4 89 0.003 27.5 6.7 27 866-892 37-63 (83)
261 3efg_A Protein SLYX homolog; x 36.2 1.3E+02 0.0045 26.1 7.9 46 875-934 15-60 (78)
262 2wt7_B Transcription factor MA 36.1 53 0.0018 29.4 5.5 29 866-894 47-75 (90)
263 2k48_A Nucleoprotein; viral pr 35.9 1.5E+02 0.005 27.2 8.2 57 866-929 34-95 (107)
264 2vpj_A Kelch-like protein 12; 35.8 2.2E+02 0.0076 29.7 11.8 17 367-384 152-168 (301)
265 1fxk_C Protein (prefoldin); ar 35.8 64 0.0022 30.6 6.6 44 868-922 2-45 (133)
266 4gga_A P55CDC, cell division c 35.6 4.7E+02 0.016 28.6 27.7 64 306-383 149-216 (420)
267 3u59_A Tropomyosin beta chain; 35.6 2E+02 0.0068 26.0 9.6 33 866-898 22-54 (101)
268 3u1c_A Tropomyosin alpha-1 cha 35.4 2.1E+02 0.007 26.0 9.6 33 866-898 22-54 (101)
269 1lwu_C Fibrinogen gamma chain; 35.2 76 0.0026 35.2 7.8 6 1061-1066 254-259 (323)
270 2efr_A General control protein 34.9 1.9E+02 0.0066 28.4 9.8 63 866-928 69-138 (155)
271 2woz_A Kelch repeat and BTB do 34.5 1.5E+02 0.0052 31.6 10.3 18 367-384 48-65 (318)
272 2e7s_A RAB guanine nucleotide 34.1 78 0.0027 30.5 6.6 34 866-899 24-57 (135)
273 1sq9_A Antiviral protein SKI8; 34.1 4.6E+02 0.016 27.9 29.6 122 305-440 17-157 (397)
274 2l5g_B Putative uncharacterize 34.1 68 0.0023 24.5 4.8 19 879-897 7-25 (42)
275 1nkp_B MAX protein, MYC proto- 33.7 73 0.0025 27.8 6.1 39 860-898 40-78 (83)
276 1ez3_A Syntaxin-1A; three heli 33.3 1.7E+02 0.0058 27.1 9.1 64 866-929 28-108 (127)
277 1e52_A Excinuclease ABC subuni 33.2 56 0.0019 27.3 4.8 37 881-926 24-60 (63)
278 2kes_A Synphilin-1; synphillin 33.1 1.3E+02 0.0044 22.9 6.2 33 869-901 6-38 (48)
279 3cvf_A Homer-3, homer protein 32.2 1.4E+02 0.0049 26.0 7.4 19 912-930 48-66 (79)
280 2v66_B Nuclear distribution pr 32.1 3.1E+02 0.011 25.4 10.2 60 868-927 43-102 (111)
281 1r5m_A SIR4-interacting protei 32.1 4.9E+02 0.017 27.7 28.6 189 367-606 218-423 (425)
282 1wff_A Riken cDNA 2810002D23 p 32.0 22 0.00076 31.5 2.3 30 656-687 23-52 (85)
283 2f23_A Anti-cleavage anti-GREA 32.0 47 0.0016 32.7 5.0 57 878-934 14-71 (156)
284 3vgz_A Uncharacterized protein 31.7 4.6E+02 0.016 27.3 24.7 17 591-607 317-334 (353)
285 2gd5_A Charged multivesicular 31.3 1.7E+02 0.006 29.2 9.3 62 870-931 17-86 (179)
286 3sja_C Golgi to ER traffic pro 31.2 1.1E+02 0.0038 25.7 6.2 34 866-899 12-57 (65)
287 3n7n_E Monopolin complex subun 30.9 10 0.00035 33.9 0.0 53 866-921 42-94 (95)
288 3jzy_A Intersectin 2; C2 domai 30.9 10 0.00035 44.5 0.0 38 88-125 327-364 (510)
289 2r2v_A GCN4 leucine zipper; co 30.9 69 0.0024 23.2 4.2 31 868-898 2-32 (34)
290 1xip_A Nucleoporin NUP159; bet 30.9 4.6E+02 0.016 29.4 13.9 65 307-384 90-154 (388)
291 2akf_A Coronin-1A; coiled coil 30.7 86 0.0029 21.9 4.5 25 867-891 6-30 (32)
292 1yfq_A Cell cycle arrest prote 30.6 4.7E+02 0.016 27.0 26.9 117 306-440 58-179 (342)
293 2efr_A General control protein 30.6 2.9E+02 0.01 27.2 10.3 52 876-928 37-89 (155)
294 2lw1_A ABC transporter ATP-bin 30.3 84 0.0029 27.8 5.9 26 873-898 21-46 (89)
295 1xaw_A Occludin; coiled-coil, 30.1 99 0.0034 29.9 6.7 45 866-911 58-102 (140)
296 2ecm_A Ring finger and CHY zin 30.0 30 0.001 27.0 2.7 35 657-691 4-38 (55)
297 1hjb_A Ccaat/enhancer binding 29.9 73 0.0025 28.4 5.3 11 925-935 69-79 (87)
298 3sjb_C Golgi to ER traffic pro 29.9 1.2E+02 0.004 27.4 6.5 40 860-899 23-74 (93)
299 3aon_A V-type sodium ATPase su 29.9 3.1E+02 0.01 28.4 11.1 72 851-928 128-199 (217)
300 2a20_A Regulating synaptic mem 29.7 25 0.00087 28.8 2.1 54 656-715 7-60 (62)
301 3uc1_A DNA gyrase subunit A; D 29.6 5.8E+02 0.02 27.8 24.1 221 310-562 49-285 (327)
302 4dzo_A Mitotic spindle assembl 29.6 92 0.0031 29.5 6.3 17 866-882 3-19 (123)
303 3f6n_A Virion-associated prote 29.6 84 0.0029 29.4 5.7 18 906-923 55-72 (129)
304 2bni_A General control protein 29.4 54 0.0018 23.8 3.4 33 867-899 1-33 (34)
305 2b5u_A Colicin E3; high resolu 29.4 1.8E+02 0.0062 33.7 9.7 67 860-927 294-360 (551)
306 3bas_A Myosin heavy chain, str 29.4 3E+02 0.01 24.3 10.0 14 920-933 74-87 (89)
307 1wfl_A Zinc finger protein 216 29.3 23 0.00078 30.6 1.8 27 658-687 25-51 (74)
308 2p61_A Hypothetical protein TM 29.1 1.2E+02 0.004 30.2 7.3 85 852-936 35-132 (162)
309 2wt7_B Transcription factor MA 29.0 1.1E+02 0.0038 27.4 6.3 21 875-895 49-69 (90)
310 4fla_A Regulation of nuclear P 28.8 4E+02 0.014 26.1 11.0 65 870-934 82-149 (152)
311 4e61_A Protein BIM1; EB1-like 28.7 2.5E+02 0.0086 25.9 8.7 41 859-899 10-50 (106)
312 1m1j_B Fibrinogen beta chain; 28.7 1.8E+02 0.0061 33.8 9.7 49 882-932 143-191 (464)
313 1wg2_A Zinc finger (AN1-like) 28.5 31 0.001 29.0 2.4 28 657-687 14-41 (64)
314 2fiy_A Protein FDHE homolog; F 28.4 19 0.00066 39.7 1.6 75 638-721 187-268 (309)
315 2csz_A Synaptotagmin-like prot 28.4 28 0.00097 30.2 2.3 51 656-716 23-74 (76)
316 3u0c_A Invasin IPAB, 62 kDa an 28.3 4E+02 0.014 26.3 10.5 83 850-932 40-140 (201)
317 1ci6_A Transcription factor AT 28.3 1.6E+02 0.0056 24.3 6.9 34 866-899 29-62 (63)
318 3c3g_A Alpha/beta peptide with 28.2 91 0.0031 22.5 4.4 30 869-898 2-31 (33)
319 2p4v_A Transcription elongatio 27.9 1E+02 0.0035 30.4 6.7 26 907-932 44-69 (158)
320 1z0k_B FYVE-finger-containing 27.8 1.2E+02 0.0041 25.8 5.9 20 875-894 47-66 (69)
321 1lwu_C Fibrinogen gamma chain; 27.7 1.2E+02 0.004 33.6 7.8 9 866-874 11-19 (323)
322 3kqg_A Langerin, C-type lectin 27.6 69 0.0024 31.6 5.5 33 856-888 5-37 (182)
323 3tq2_A KE1; parallel three hel 27.5 1.3E+02 0.0044 21.2 5.0 29 869-897 3-31 (36)
324 2zqm_A Prefoldin beta subunit 27.4 90 0.0031 28.7 5.9 49 853-901 62-111 (117)
325 1g73_A SMAC/diablo, second mit 27.2 2.5E+02 0.0086 27.6 8.9 62 866-928 78-142 (162)
326 1t2k_D Cyclic-AMP-dependent tr 27.1 1.2E+02 0.004 24.9 5.8 33 866-898 21-53 (61)
327 3trt_A Vimentin; cytoskeleton, 27.1 93 0.0032 26.6 5.5 37 889-928 39-75 (77)
328 4dzn_A Coiled-coil peptide CC- 26.9 1.3E+02 0.0044 20.9 4.8 27 868-894 3-29 (33)
329 1fio_A SSO1 protein; four heli 26.8 2.9E+02 0.01 27.5 10.2 64 866-929 25-97 (196)
330 1few_A Second mitochondria-der 26.7 2.7E+02 0.0092 27.9 9.2 62 866-928 78-142 (184)
331 3he5_A Synzip1; heterodimeric 26.7 98 0.0033 23.2 4.5 9 871-879 7-15 (49)
332 2jee_A YIIU; FTSZ, septum, coi 26.5 1.3E+02 0.0046 26.3 6.2 30 866-895 19-48 (81)
333 1joc_A EEA1, early endosomal a 26.3 1.1E+02 0.0038 28.9 6.4 24 866-889 17-40 (125)
334 2gd5_A Charged multivesicular 26.2 1E+02 0.0035 30.9 6.5 20 908-927 70-89 (179)
335 1suu_A DNA gyrase subunit A; t 26.0 6.5E+02 0.022 27.1 24.8 218 310-558 54-285 (312)
336 1j1j_A Translin; testis/brain 25.8 2.4E+02 0.0081 29.8 9.4 25 911-935 70-94 (240)
337 1am9_A Srebp-1A, protein (ster 25.6 1E+02 0.0036 26.8 5.6 35 860-894 43-77 (82)
338 4ani_A Protein GRPE; chaperone 25.4 2.7E+02 0.0093 28.8 9.5 36 866-901 65-100 (213)
339 1wfp_A Zinc finger (AN1-like) 25.4 34 0.0011 29.5 2.2 28 657-687 24-51 (74)
340 3frt_A Charged multivesicular 25.3 2.6E+02 0.0088 29.1 9.4 34 899-932 54-87 (218)
341 1z87_A Alpha-1-syntrophin; pro 25.3 85 0.0029 33.7 5.9 39 84-122 221-261 (263)
342 1jnm_A Proto-oncogene C-JUN; B 25.3 1.2E+02 0.0042 24.9 5.6 32 866-897 21-52 (62)
343 1nkp_A C-MYC, MYC proto-oncoge 25.1 1.3E+02 0.0046 26.6 6.2 40 860-899 45-84 (88)
344 2p22_A Suppressor protein STP2 25.0 99 0.0034 31.1 5.9 30 866-895 55-84 (174)
345 2v4h_A NF-kappa-B essential mo 25.0 4.1E+02 0.014 24.5 10.8 48 868-926 25-72 (110)
346 3tnu_B Keratin, type II cytosk 24.7 4.4E+02 0.015 24.7 10.5 64 861-927 30-93 (129)
347 4dk0_A Putative MACA; alpha-ha 24.5 1.7E+02 0.006 32.2 8.7 67 866-932 76-152 (369)
348 2wt7_A Proto-oncogene protein 24.4 1.4E+02 0.0047 24.7 5.8 33 866-898 22-54 (63)
349 1gqe_A Release factor 2, RF2; 24.2 2.7E+02 0.0093 31.2 9.9 47 889-935 72-121 (365)
350 1m1j_B Fibrinogen beta chain; 24.2 2.7E+02 0.0094 32.3 10.2 17 866-882 102-118 (464)
351 1t2k_D Cyclic-AMP-dependent tr 24.2 1.2E+02 0.004 24.9 5.3 27 868-894 30-56 (61)
352 3jro_A Fusion protein of prote 24.1 1E+03 0.034 28.7 26.7 109 306-439 11-131 (753)
353 4gga_A P55CDC, cell division c 24.1 7.2E+02 0.025 27.0 28.7 99 314-438 115-216 (420)
354 2wg5_A General control protein 24.0 56 0.0019 30.3 3.7 10 920-929 25-34 (109)
355 2xyi_A Probable histone-bindin 23.9 7.5E+02 0.025 27.1 20.2 201 316-555 196-409 (430)
356 2adz_A Alpha-1-syntrophin; pro 23.8 95 0.0032 31.4 5.5 39 84-122 136-176 (178)
357 3qh9_A Liprin-beta-2; coiled-c 23.7 2E+02 0.0068 25.1 6.6 42 871-926 23-64 (81)
358 1nlw_A MAD protein, MAX dimeri 23.7 1.4E+02 0.0049 25.9 6.1 40 859-898 39-78 (80)
359 1lq7_A Alpha3W; three helix bu 23.6 2E+02 0.0067 22.9 6.0 15 885-899 29-43 (67)
360 1sq9_A Antiviral protein SKI8; 23.5 6.8E+02 0.023 26.5 29.5 73 306-384 64-156 (397)
361 1q7f_A NHL, brain tumor CG1071 23.4 5.9E+02 0.02 25.8 20.3 13 540-552 255-267 (286)
362 1s94_A S-syntaxin; three helix 23.4 2.8E+02 0.0095 27.5 9.1 52 878-929 78-139 (180)
363 2wt7_A Proto-oncogene protein 23.4 1.4E+02 0.0048 24.7 5.6 26 868-893 31-56 (63)
364 2jrp_A Putative cytoplasmic pr 23.4 45 0.0015 29.3 2.6 25 659-683 3-27 (81)
365 3m48_A General control protein 23.3 55 0.0019 23.6 2.5 29 869-897 2-30 (33)
366 3tnu_A Keratin, type I cytoske 23.1 4.5E+02 0.016 24.7 10.1 58 866-926 37-94 (131)
367 2xdj_A Uncharacterized protein 23.1 1.3E+02 0.0045 26.5 5.6 24 873-896 33-56 (83)
368 3v7d_B Cell division control p 23.0 7.7E+02 0.026 27.0 35.0 237 307-608 125-381 (464)
369 3jrp_A Fusion protein of prote 23.0 6.6E+02 0.023 26.2 30.9 241 306-607 13-286 (379)
370 3csx_A Putative uncharacterize 22.9 96 0.0033 27.2 4.6 24 866-889 21-44 (81)
371 1pgu_A Actin interacting prote 22.8 8.7E+02 0.03 27.5 25.4 215 306-604 162-398 (615)
372 3viq_A SWI5-dependent recombin 22.6 1.9E+02 0.0065 27.3 7.1 20 867-886 7-26 (122)
373 1fxk_A Prefoldin; archaeal pro 22.6 98 0.0033 28.0 5.1 50 851-900 55-105 (107)
374 3axj_A GM27569P, translin; tra 22.4 1.7E+02 0.0057 31.1 7.5 26 910-935 72-97 (249)
375 2zxx_A Geminin; coiled-coil, c 22.3 1.8E+02 0.0062 25.4 6.2 18 866-883 33-50 (79)
376 1foe_A T-lymphoma invasion and 22.3 1.7E+02 0.0057 32.7 8.0 38 90-127 325-370 (377)
377 3mq9_A Bone marrow stromal ant 22.2 67 0.0023 37.1 4.8 39 857-895 429-471 (471)
378 3ni0_A Bone marrow stromal ant 22.2 2E+02 0.0068 25.8 6.5 18 883-900 69-86 (99)
379 1z60_A TFIIH basal transcripti 22.0 12 0.00042 30.9 -1.1 29 659-688 16-44 (59)
380 3vkg_A Dynein heavy chain, cyt 22.0 2.5E+02 0.0086 40.6 11.0 26 866-891 1933-1958(3245)
381 1jcd_A Major outer membrane li 22.0 2E+02 0.007 23.0 6.0 26 867-892 11-36 (52)
382 3fx7_A Putative uncharacterize 21.9 2.4E+02 0.0083 25.4 7.2 55 866-930 26-84 (94)
383 1wlq_A Geminin; coiled-coil; 2 21.9 2.6E+02 0.0088 24.6 7.0 30 875-904 39-68 (83)
384 3plt_A Sphingolipid long chain 21.9 3.3E+02 0.011 28.6 9.3 59 872-932 116-180 (234)
385 1suu_A DNA gyrase subunit A; t 21.8 7.7E+02 0.026 26.5 25.8 262 315-609 9-284 (312)
386 3s4r_A Vimentin; alpha-helix, 21.7 4.3E+02 0.015 23.5 9.3 15 918-932 79-93 (93)
387 3cvf_A Homer-3, homer protein 21.6 1.7E+02 0.0056 25.6 5.8 16 914-929 53-68 (79)
388 2b9c_A Striated-muscle alpha t 21.5 4.6E+02 0.016 25.4 9.8 66 867-932 52-117 (147)
389 4fi5_A Nucleoprotein; structur 21.4 3.2E+02 0.011 25.3 7.9 53 876-928 24-81 (113)
390 3etw_A Adhesin A; antiparallel 21.3 2.2E+02 0.0074 26.9 7.0 23 910-932 65-87 (119)
391 2oxj_A Hybrid alpha/beta pepti 21.2 1.5E+02 0.005 21.6 4.4 30 868-897 2-31 (34)
392 3m9b_A Proteasome-associated A 21.2 1.1E+02 0.0038 32.5 5.6 16 914-929 80-95 (251)
393 3v7d_B Cell division control p 21.0 8.4E+02 0.029 26.6 35.0 238 306-605 205-460 (464)
394 1zvt_A Topoisomerase IV subuni 20.9 5.5E+02 0.019 27.0 11.3 125 310-446 40-169 (256)
395 1l8d_A DNA double-strand break 20.8 4.3E+02 0.015 23.8 9.2 30 869-898 12-41 (112)
396 2ct2_A Tripartite motif protei 20.6 44 0.0015 28.8 2.1 53 657-716 14-66 (88)
397 1iym_A EL5; ring-H2 finger, ub 20.6 48 0.0016 25.8 2.2 35 657-691 4-38 (55)
398 3f6n_A Virion-associated prote 20.6 3.1E+02 0.01 25.7 7.6 11 916-926 48-58 (129)
399 4e61_A Protein BIM1; EB1-like 20.3 1.9E+02 0.0065 26.6 6.2 34 866-899 10-43 (106)
400 2dq3_A Seryl-tRNA synthetase; 20.3 1.3E+02 0.0046 34.5 6.7 77 859-935 29-108 (425)
401 3ksy_A SOS-1, SON of sevenless 20.2 2.2E+02 0.0074 36.7 9.3 38 89-126 511-549 (1049)
402 1l8d_A DNA double-strand break 20.2 3.4E+02 0.012 24.6 8.3 29 866-894 16-44 (112)
403 1uo4_A General control protein 20.2 75 0.0026 23.1 2.7 30 868-897 2-31 (34)
404 1wrd_A TOM1, target of MYB pro 20.1 93 0.0032 28.5 4.3 27 867-893 6-32 (103)
405 1x79_B RAB GTPase binding effe 20.1 5.3E+02 0.018 23.9 9.3 49 875-933 46-94 (112)
406 1naf_A ADP-ribosylation factor 20.1 2.1E+02 0.0072 28.2 7.1 28 866-893 52-79 (158)
407 2ys3_A UNC-112-related protein 20.0 1.1E+02 0.0038 29.6 4.9 26 99-125 88-113 (137)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-66 Score=604.84 Aligned_cols=372 Identities=35% Similarity=0.626 Sum_probs=337.2
Q ss_pred cccccCCCCcEEEEcCCCCCcccCCCCCcCCccccccccccceEEecccCCCCEEEEEecCceEEEEEcCCeEEEEeCCC
Q 001361 254 GHDDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFSWGEEL 333 (1092)
Q Consensus 254 ~~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~ 333 (1092)
.+.+++++|+||+||.|. +||||.+.. .+...|.+++.+...+|++|+||..|+++|+++|+||+||.|.
T Consensus 12 ~~~~l~~~G~v~~wG~n~-~GqLG~~~~---------~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~ 81 (389)
T 3kci_A 12 ENLYFQGSGTIYGWGHNH-RGQLGGIEG---------AKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGA 81 (389)
T ss_dssp ---------CEEEEEECT-TSTTSSCSC---------SEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCG
T ss_pred cceeECCCCeEEEeeCCC-CccCCCCcC---------ccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCC
Confidence 456799999999999999 999998764 5677899998888889999999999999999999999999999
Q ss_pred CCccCCCCCCCCCcceEeeccCCCcE--EEEEeCCCeEEEEEeCCcEEEeCCccCCCCccCCCCCcceecceeecCCCCC
Q 001361 334 GGRLGHGVDSDVSHPKLIDALKNINV--ELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEG 411 (1092)
Q Consensus 334 ~GqLG~g~~~~~~~P~~V~~l~~~~I--~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~ 411 (1092)
+||||.+...+...|.++..+.+..| ++|+||.+|++||+++|+||+||.| .+||||+++......|.++.. +.+
T Consensus 82 ~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v~~-l~~ 158 (389)
T 3kci_A 82 GGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA--EDGKLGHGNRSPCDRPRVIES-LRG 158 (389)
T ss_dssp GGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC--GGGTTCSSSCCCEEEEEECGG-GTT
T ss_pred CCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCC--CCCcCCCCCCccCcCCeEecc-cCC
Confidence 99999999888899999998877644 7888999999999999999999999 899999999988889998875 567
Q ss_pred CcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCCeEEEEecCC--ceEEEEEEeeecCCCC
Q 001361 412 IHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGV--WHTAAVVEVMVGSSSS 489 (1092)
Q Consensus 412 ~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~VacG~--~ht~aLte~~~~~s~~ 489 (1092)
.+|++|+||.+|+++|+++|+||+||.|.+||||+++......|..+..+.+.+|++|+||. .|+++|+
T Consensus 159 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~--------- 229 (389)
T 3kci_A 159 IEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT--------- 229 (389)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE---------
T ss_pred CeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEc---------
Confidence 79999999999999999999999999999999999999999999999999999999999995 8999998
Q ss_pred ccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCcEEEEEecCCcEEEEeCCCCCCCCCCCCCC-c
Q 001361 490 SNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANG-K 568 (1092)
Q Consensus 490 ~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~-~ 568 (1092)
.+|+||+||.|.+||||.++......|.++..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.... .
T Consensus 230 ---~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 306 (389)
T 3kci_A 230 ---DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVR 306 (389)
T ss_dssp ---TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEE
T ss_pred ---cCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCcccc
Confidence 599999999999999999999889999999998888999999999999999999999999999999999987544 4
Q ss_pred cceeeccccCCCCEEEEEEcCCEEEEEEcCCeEEEEeCCCCCCCCCCCCCCcccCceeeeccCCceeeEEecCCcceeee
Q 001361 569 LPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNFPSLVEALKDKQVKSIVCGTSFTAAIC 648 (1092)
Q Consensus 569 ~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG~Vy~WG~n~~GQLG~G~~~~~~~P~~V~~l~~~~V~~IacG~~~T~al~ 648 (1092)
.|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|+.+.+.+|++|+||..||+||+
T Consensus 307 ~P~~v~~-l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~ 385 (389)
T 3kci_A 307 RPRQVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWS 385 (389)
T ss_dssp EEEECGG-GTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEEEC
T ss_pred CCeEecc-CCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEEEEEecCCcEEEEe
Confidence 6777774 667889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eec
Q 001361 649 LHK 651 (1092)
Q Consensus 649 ~~k 651 (1092)
..+
T Consensus 386 ~~~ 388 (389)
T 3kci_A 386 TSK 388 (389)
T ss_dssp C--
T ss_pred cCC
Confidence 643
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=7.3e-64 Score=586.80 Aligned_cols=357 Identities=38% Similarity=0.630 Sum_probs=330.5
Q ss_pred ccCCCC-cccccCCCCcEEEEcCCCCCcccCCCCCcCCccccccccccceEEecccCCCCEEEEEecCceEEEEEcCC-e
Q 001361 248 SSSQGS-GHDDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQG-E 325 (1092)
Q Consensus 248 ~~s~G~-~~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG-~ 325 (1092)
.++.|. |..+++.+|.||+||.|. +||||.|.. .+...|.++..+...+|++|+||..|+++|+++| +
T Consensus 20 ~ia~G~~hs~al~~~g~v~~wG~n~-~GqLG~g~~---------~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~ 89 (406)
T 4d9s_A 20 IISAGASHSVALLSGDIVCSWGRGE-DGQLGHGDA---------EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGME 89 (406)
T ss_dssp EEEECSSEEEEEETTTEEEEEECCT-TSTTCSSSC---------CCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTE
T ss_pred EEecCCCeEEEEEeCCEEEEEeCCC-CCCCCCCCc---------ccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCE
Confidence 344454 667999999999999999 999999975 4567899998888889999999999999999986 9
Q ss_pred EEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCccCCCCccCCCCCcceecceee
Q 001361 326 VFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKL 405 (1092)
Q Consensus 326 Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v 405 (1092)
||+||.|.+||||++...+...|.++..+.+.+|++|+||.+|+++|+++|+||+||.| .+||||.+.......|.++
T Consensus 90 v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v 167 (406)
T 4d9s_A 90 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN--QNGQLGLGDTEDSLVPQKI 167 (406)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECC--TTSTTCSSSCCCEEEEEEC
T ss_pred EEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCC--CCccCCCCCCCCcccceEe
Confidence 99999999999999999888999999999999999999999999999999999999999 8999999999888899988
Q ss_pred cCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCCeEEEEecCCceEEEEEEeeec
Q 001361 406 NGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVG 485 (1092)
Q Consensus 406 ~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLte~~~~ 485 (1092)
.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||+++......|..|..+.+.+|++|+||.+|+++|+
T Consensus 168 ~~-~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~----- 241 (406)
T 4d9s_A 168 QA-FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVS----- 241 (406)
T ss_dssp GG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEE-----
T ss_pred cc-cCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEc-----
Confidence 75 567799999999999999999999999999999999999999999999999988889999999999999998
Q ss_pred CCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCcEEEEEecCCcEEEEeCCCCCCCCCCCC
Q 001361 486 SSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKA 565 (1092)
Q Consensus 486 ~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLt~dG~Vy~wG~N~~GQLG~~~~ 565 (1092)
.+|+||+||.|.+||||+++......|+++..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+..
T Consensus 242 -------~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 314 (406)
T 4d9s_A 242 -------YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNN 314 (406)
T ss_dssp -------TTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSS
T ss_pred -------CCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCC
Confidence 5999999999999999999999999999999998889999999999999999999999999999999999875
Q ss_pred CC-ccceeeccccCCCCEEEEEEcCCEEEEEEcCCeEEEEeCCCCCCCCCCCCCCcccCceeeecc
Q 001361 566 NG-KLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNFPSLVEALK 630 (1092)
Q Consensus 566 ~~-~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG~Vy~WG~n~~GQLG~G~~~~~~~P~~V~~l~ 630 (1092)
.. ..|.++.. +....|++|+||.+|++||+++|+||+||.|.+||||+|+..++..|++|+.+.
T Consensus 315 ~~~~~p~~v~~-~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~ 379 (406)
T 4d9s_A 315 LDQCSPVQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379 (406)
T ss_dssp SCEEEEEEECC-GGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGC
T ss_pred CCCccCEEEec-cCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeec
Confidence 54 36777753 456789999999999999999999999999999999999999999999998764
No 3
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=2e-62 Score=575.62 Aligned_cols=368 Identities=28% Similarity=0.459 Sum_probs=320.2
Q ss_pred CcccccCCCCcEEEEcCCCCCcccCCCCCcCCccccccccccceEEecccCCCCEEEEEecCceEEEEEcCCeEEEEeCC
Q 001361 253 SGHDDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFSWGEE 332 (1092)
Q Consensus 253 ~~~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N 332 (1092)
.|..+++.+|+||+||.|. +||||.|... .....|+.+.. ..+|++|+||..|+++|+++|+||+||.|
T Consensus 18 ~h~~~l~~~g~v~~wG~n~-~GqLG~g~~~--------~~~~~P~~v~~--~~~i~~va~G~~hs~~l~~~G~v~~wG~n 86 (413)
T 1a12_A 18 SHRSHSTEPGLVLTLGQGD-VGQLGLGENV--------MERKKPALVSI--PEDVVQAEAGGMHTVCLSKSGQVYSFGCN 86 (413)
T ss_dssp CCTTCCCCCBEEEEEEECT-TSTTCSCTTC--------CEEEEEEEECC--SSCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred ccceeecCCCcEEEEECCC-CCcCCCCCCc--------cccccceEccC--CCCeEEEEeCCCeEEEEcCCCCEEEEECC
Confidence 4667899999999999999 9999999742 23567888874 36899999999999999999999999999
Q ss_pred CCCccCCCCCC--CCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCccCCCCccCCCCCcce-ecceeecCCC
Q 001361 333 LGGRLGHGVDS--DVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSL-WLPKKLNGPL 409 (1092)
Q Consensus 333 ~~GqLG~g~~~--~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~-~~P~~v~~~l 409 (1092)
.+||||++... ....|.+|.. . .+|++|+||.+|+++|+++|+||+||.+.+.+||||.+..... ..|.++.
T Consensus 87 ~~GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~--- 161 (413)
T 1a12_A 87 DEGALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQ--- 161 (413)
T ss_dssp TTSTTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEEC---
T ss_pred CCCCCCCCCCCCccccCCeEecC-C-CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEec---
Confidence 99999998763 4567888853 3 3899999999999999999999999982228999999876543 4588773
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCc-----------ccccceeeecC-----CCCeEEEEecCC
Q 001361 410 EGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRI-----------SVSTPREVDSL-----KGLRTVRAACGV 473 (1092)
Q Consensus 410 ~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~-----------~~~~P~~V~~l-----~~~~I~~VacG~ 473 (1092)
...+|++|+||.+|+++|+++|+||+||.|.+||||++... ....|+.+... ...+|++|+||.
T Consensus 162 ~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~ 241 (413)
T 1a12_A 162 LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGA 241 (413)
T ss_dssp CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEET
T ss_pred CCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCC
Confidence 45689999999999999999999999999999999987532 23567666543 446899999999
Q ss_pred ceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCC--CCeEEEEeeCcEEEEEecCCcEEE
Q 001361 474 WHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVE--PNFCQVSCGHSLTVALTTTGHVYT 551 (1092)
Q Consensus 474 ~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~--~~I~~Ia~G~~htlaLt~dG~Vy~ 551 (1092)
+|+++|+ .+|+||+||.|.+||||+++......|+.|..+.+ .+|++|+||.+|+++|+++|+||+
T Consensus 242 ~hs~alt------------~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~ 309 (413)
T 1a12_A 242 YFTFAIS------------HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYS 309 (413)
T ss_dssp TEEEEEE------------TTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEE
T ss_pred CEEEEEe------------CCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEE
Confidence 9999998 59999999999999999999888999999998866 679999999999999999999999
Q ss_pred EeCCCCCCCCCCCCC--CccceeeccccCCCCEEEEEEcCCEEEEEEcCCeEEEEeCCCCCCCCCCCCCCcccCceeee-
Q 001361 552 MGSPVYGQLGDPKAN--GKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNFPSLVEA- 628 (1092)
Q Consensus 552 wG~N~~GQLG~~~~~--~~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG~Vy~WG~n~~GQLG~G~~~~~~~P~~V~~- 628 (1092)
||.|.+||||.+... ...|..+.. + ..|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|..
T Consensus 310 wG~n~~GqLG~g~~~~~~~~P~~v~~-l--~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~ 386 (413)
T 1a12_A 310 LGRAEYGRLGLGEGAEEKSIPTLISR-L--PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGK 386 (413)
T ss_dssp EECCGGGTTCSCTTCCCEEEEEECCS-S--SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCST
T ss_pred eeCCCCCccCCCCCCccccCCEEecc-c--CceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEcccc
Confidence 999999999998432 346777764 2 2799999999999999999999999999999999999999999999974
Q ss_pred -ccCCceeeEEecCCcceeeeeec
Q 001361 629 -LKDKQVKSIVCGTSFTAAICLHK 651 (1092)
Q Consensus 629 -l~~~~V~~IacG~~~T~al~~~k 651 (1092)
+.+..|++|+||.+||++|+.++
T Consensus 387 ~~~~~~v~~v~~G~~ht~~l~~~g 410 (413)
T 1a12_A 387 QLENRVVLSVSSGGQHTVLLVKDK 410 (413)
T ss_dssp TTTTEEEEEEEECSSEEEEEEEEC
T ss_pred ccCCCeEEEEeeCCCcEEEEEecC
Confidence 57789999999999999999754
No 4
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=5.4e-62 Score=573.45 Aligned_cols=370 Identities=25% Similarity=0.381 Sum_probs=322.2
Q ss_pred cCCCC-cccccCCCCcEEEEcCCCCCcccCCCCCcCCccccccccccceEEecccCCCCEEEEEecCceEEEEEcCCeEE
Q 001361 249 SSQGS-GHDDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVF 327 (1092)
Q Consensus 249 ~s~G~-~~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy 327 (1092)
++.|. +..+++.+|+||+||.|. +||||.|.+. .....|.+++.+. +|++|+||..|+++|+++|+||
T Consensus 29 ia~g~~~~~~l~~~G~v~~wG~n~-~GqLG~g~~~--------~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~ 97 (423)
T 3mvd_K 29 IAFHLELPKRRTVLGNVLVCGNGD-VGQLGLGEDI--------LERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIY 97 (423)
T ss_dssp CCCCCCCCCCCCCCEEEEEEEECT-TSTTCSCSSC--------CEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEE
T ss_pred EecCCccceeecCCCcEEEEeCCC-CCCCCCCCCC--------ccCcCCeEccCCC--CceEEeeCCCeEEEEeCCCeEE
Confidence 34444 667999999999999999 9999999642 3456788887654 6899999999999999999999
Q ss_pred EEeCCCCCccCCCCCCC--CCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCccCCCCccCCCCCcceecceee
Q 001361 328 SWGEELGGRLGHGVDSD--VSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKL 405 (1092)
Q Consensus 328 ~wG~N~~GqLG~g~~~~--~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v 405 (1092)
+||.|.+||||++...+ ...|.+|... .+|++|+||.+|+++|+++|+||+||.+.+.+||||.+.......|.++
T Consensus 98 ~wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~ 175 (423)
T 3mvd_K 98 SFGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL 175 (423)
T ss_dssp EEECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES
T ss_pred EeECCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEe
Confidence 99999999999998764 6788888743 4799999999999999999999999982228999999988877777766
Q ss_pred cCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCC-----------cccccceeeecCCCCeEEEEecCCc
Q 001361 406 NGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDR-----------ISVSTPREVDSLKGLRTVRAACGVW 474 (1092)
Q Consensus 406 ~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~-----------~~~~~P~~V~~l~~~~I~~VacG~~ 474 (1092)
+.+.+|++|+||.+|+++|+++|+||+||.|.+||||++.. .....|..+..+....|++|+||.+
T Consensus 176 ---~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~ 252 (423)
T 3mvd_K 176 ---MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNY 252 (423)
T ss_dssp ---STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETT
T ss_pred ---cCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCc
Confidence 34678999999999999999999999999999999999864 2456899998888889999999999
Q ss_pred eEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCC--cceeeEEecccCCCCeEEEEeeCcEEEEEecCCcEEEE
Q 001361 475 HTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKE--ARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTM 552 (1092)
Q Consensus 475 ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~--~~~~P~~V~~l~~~~I~~Ia~G~~htlaLt~dG~Vy~w 552 (1092)
|++++.. .+|+||+||.|.+||||.+... ....|..+. ..+|++|+||.+|++||+++|+||+|
T Consensus 253 ~~~~~~~-----------~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~w 318 (423)
T 3mvd_K 253 CTFMRES-----------QTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVV 318 (423)
T ss_dssp EEEEEET-----------TTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEE
T ss_pred EEEEEEC-----------CCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEE
Confidence 9999952 6999999999999999996543 345666655 36899999999999999999999999
Q ss_pred eCCCCCCCCCCCCCC--ccceeeccccCCCCEEEEEEcCCEEEEEEcCCeEEEEeCCCCCCCCCCCCCCcccCceeee--
Q 001361 553 GSPVYGQLGDPKANG--KLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNFPSLVEA-- 628 (1092)
Q Consensus 553 G~N~~GQLG~~~~~~--~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG~Vy~WG~n~~GQLG~G~~~~~~~P~~V~~-- 628 (1092)
|.|.+||||.+.... ..|..+.. +.. .|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|..
T Consensus 319 G~n~~GqLG~g~~~~~~~~p~~v~~-l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~ 396 (423)
T 3mvd_K 319 GRPEYGRLGLGDVKDVVEKPTIVKK-LTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKN 396 (423)
T ss_dssp ECCGGGTTCSSSCCSCEEEEEECTT-CCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCSTT
T ss_pred ECCCCCCCCCCCccccccCceEecc-CCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeCcc
Confidence 999999999988655 35766664 333 899999999999999999999999999999999999999999999985
Q ss_pred ccCCceeeEEecCCcceeeeee
Q 001361 629 LKDKQVKSIVCGTSFTAAICLH 650 (1092)
Q Consensus 629 l~~~~V~~IacG~~~T~al~~~ 650 (1092)
+.+.+|++|+||.+||++|+..
T Consensus 397 ~~~~~v~~va~G~~ht~~l~~~ 418 (423)
T 3mvd_K 397 TQGKHMLLASGGGQHAIFLVKA 418 (423)
T ss_dssp TTTCCEEEEEECSSEEEEEEEC
T ss_pred cCCCEEEEEEECCCcEEEEEcc
Confidence 6788999999999999999964
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-62 Score=582.62 Aligned_cols=370 Identities=24% Similarity=0.388 Sum_probs=317.3
Q ss_pred ccccCCCCcEEEEcCCCCCcccCCCCCcCCccccccccccceEEeccc--CCCCEEEEEecCceEEEEEcCCeEEEEeCC
Q 001361 255 HDDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESA--VVLDVQNIACGGRHAALVTKQGEVFSWGEE 332 (1092)
Q Consensus 255 ~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~--~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N 332 (1092)
..+++.+|+||+||.|. +||||.|... ...+...|..++.+ ...+|++|+||..|+++|+++|+||+||.|
T Consensus 22 ~~~~~~~g~v~~wG~n~-~GqLG~G~~~------~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n 94 (473)
T 3of7_A 22 MYLSVQPLDIFCWGTGS-MCELGLGPLA------KNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCN 94 (473)
T ss_dssp HHCCSSCCEEEEEEECT-TSTTCSCSCG------GGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred cccCCCCccEEEEcCCC-CCccCCCCCc------ccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECC
Confidence 35788999999999999 9999999741 12456678877765 456899999999999999999999999999
Q ss_pred CCCccCCCCCCC-----------------------CCcceEeec--c----CCCcEEEEEeCCCeEEEEEeCCcEEEeCC
Q 001361 333 LGGRLGHGVDSD-----------------------VSHPKLIDA--L----KNINVELVACGEHHTCAVTLSGDMYTWGG 383 (1092)
Q Consensus 333 ~~GqLG~g~~~~-----------------------~~~P~~V~~--l----~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~ 383 (1092)
.+||||++.... ...|.+|.. + .+.+|++|+||.+|++||+++|+||+||.
T Consensus 95 ~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~ 174 (473)
T 3of7_A 95 DVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGT 174 (473)
T ss_dssp TTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeC
Confidence 999999987654 457888875 5 36799999999999999999999999998
Q ss_pred ccCCCCccCCCCC--cceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCcc----ccccee
Q 001361 384 SNCNFGLLGHGNE--MSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRIS----VSTPRE 457 (1092)
Q Consensus 384 n~~~~GqLG~g~~--~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~----~~~P~~ 457 (1092)
|.+..||||.+.. .....|.++.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||++.... ...|..
T Consensus 175 n~~~~GqLG~~~~~~~~~~~P~~v~~-l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~ 253 (473)
T 3of7_A 175 FRCNEGILGFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRP 253 (473)
T ss_dssp EEETTEEEESBTTTBSCEEEEEECCC-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEE
T ss_pred CcCCCCccCCCCCCCccccCcEEccc-cCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCcee
Confidence 5448999998654 35667888875 5567899999999999999999999999999999999986544 446666
Q ss_pred eecCCCCeEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCC----cceeeEEecccCCCCeEEE
Q 001361 458 VDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKE----ARLVPTCVAALVEPNFCQV 533 (1092)
Q Consensus 458 V~~l~~~~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~----~~~~P~~V~~l~~~~I~~I 533 (1092)
+.. .+|++|+||.+|+++|+ .+|+||+||.|.+||||++... ....|+.|..+.+.+|++|
T Consensus 254 ~~~---~~v~~Ia~G~~hs~alt------------~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~i 318 (473)
T 3of7_A 254 FGL---RHVKYIASGENHCFALT------------KDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSI 318 (473)
T ss_dssp CSC---CSEEEEEECSSEEEEEE------------TTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEE
T ss_pred cCC---cceEEEecCCCeEEEEe------------cCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEE
Confidence 643 47999999999999998 5999999999999999998754 4578999998888899999
Q ss_pred EeeCcEEEEEecCCcEEEEeCCCCCCCCCCCCC-----------C----ccceeeccccCCCCEEEEEEcCCEEEEEEcC
Q 001361 534 SCGHSLTVALTTTGHVYTMGSPVYGQLGDPKAN-----------G----KLPTRVEGKLTKNFVEEIACGDYHVAVLTSR 598 (1092)
Q Consensus 534 a~G~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~-----------~----~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~d 598 (1092)
+||.+|+++|+++|+||+||.|.+||||.+... . ..|..+.. ...|++|+||.+|++||+++
T Consensus 319 a~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~---~~~v~~Ia~G~~hs~al~~~ 395 (473)
T 3of7_A 319 AAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN---VPKFKSVAAGSHHSVAVAQN 395 (473)
T ss_dssp EECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCS---SCCEEEEEECSSEEEEEETT
T ss_pred EeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCC---CCceEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999986531 1 13444432 12799999999999999999
Q ss_pred CeEEEEeCCCCCCCCCCC-CCCcccCceee--eccCCceeeEEecCCcceeeeee
Q 001361 599 TEVYTWGKGANGRLGHGD-TDDRNFPSLVE--ALKDKQVKSIVCGTSFTAAICLH 650 (1092)
Q Consensus 599 G~Vy~WG~n~~GQLG~G~-~~~~~~P~~V~--~l~~~~V~~IacG~~~T~al~~~ 650 (1092)
|+||+||.|.+||||+|+ ..+...|++|+ .+.+++|++|+||.+||++|...
T Consensus 396 G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~ 450 (473)
T 3of7_A 396 GIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVK 450 (473)
T ss_dssp SCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred CcEEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEec
Confidence 999999999999999999 88889999998 45778899999999999999864
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.5e-59 Score=550.24 Aligned_cols=330 Identities=35% Similarity=0.635 Sum_probs=310.7
Q ss_pred CCCEEEEEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCC-cEEEeC
Q 001361 304 VLDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSG-DMYTWG 382 (1092)
Q Consensus 304 ~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG-~Vy~wG 382 (1092)
..+|++|+||..|+++|+++|+||+||.|.+||||++...+...|.++..+.+.+|++|+||.+|+++|+++| +||+||
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 3589999999999999999999999999999999999999999999999999899999999999999999986 999999
Q ss_pred CccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCC
Q 001361 383 GSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLK 462 (1092)
Q Consensus 383 ~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~ 462 (1092)
.| .+||||+++......|.++.. +.+.+|++|+||..|+++|+++|+||+||.|.+||||+++......|..+..+.
T Consensus 95 ~n--~~GqLG~g~~~~~~~p~~v~~-l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 171 (406)
T 4d9s_A 95 WG--DFGRLGHGNSSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171 (406)
T ss_dssp CC--GGGTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred CC--CCcCCCCCCCCccccceEecc-cCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccC
Confidence 99 899999999988888988875 567799999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCcEEEE
Q 001361 463 GLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVA 542 (1092)
Q Consensus 463 ~~~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htla 542 (1092)
+.+|++|+||.+|+++|+ .+|+||+||.|.+||||+++......|.++..+...+|++|+||.+|+++
T Consensus 172 ~~~i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~ 239 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAVT------------EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTIS 239 (406)
T ss_dssp TCCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEE
T ss_pred CCcEEEEecCCCeEEEEe------------CCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEE
Confidence 999999999999999998 59999999999999999999999999999998888899999999999999
Q ss_pred EecCCcEEEEeCCCCCCCCCCCCCC-ccceeeccccCCCCEEEEEEcCCEEEEEEcCCeEEEEeCCCCCCCCCCCCCCcc
Q 001361 543 LTTTGHVYTMGSPVYGQLGDPKANG-KLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRN 621 (1092)
Q Consensus 543 Lt~dG~Vy~wG~N~~GQLG~~~~~~-~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG~Vy~WG~n~~GQLG~G~~~~~~ 621 (1092)
|+.+|+||+||.|.+||||.+.... ..|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+|+..+..
T Consensus 240 l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 318 (406)
T 4d9s_A 240 VSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC 318 (406)
T ss_dssp EETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEE
T ss_pred EcCCCCEEEeeCCCCCCCCCCCCcCccccEEecc-cCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCc
Confidence 9999999999999999999987544 46777764 667789999999999999999999999999999999999999999
Q ss_pred cCceeeeccCCceeeEEecCCcceeeee
Q 001361 622 FPSLVEALKDKQVKSIVCGTSFTAAICL 649 (1092)
Q Consensus 622 ~P~~V~~l~~~~V~~IacG~~~T~al~~ 649 (1092)
.|++|..+.+.+|++|+||..||+||+.
T Consensus 319 ~p~~v~~~~~~~v~~va~G~~hs~alt~ 346 (406)
T 4d9s_A 319 SPVQVRFPDDQKVVQVSCGWRHTLAVTE 346 (406)
T ss_dssp EEEEECCGGGCCEEEEEECSSEEEEEET
T ss_pred cCEEEeccCCCcEEEEEeCCCeEEEEeC
Confidence 9999998888899999999999999985
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-56 Score=520.48 Aligned_cols=327 Identities=34% Similarity=0.581 Sum_probs=289.0
Q ss_pred EEEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCccCCC
Q 001361 309 NIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNF 388 (1092)
Q Consensus 309 ~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~ 388 (1092)
++..-..+.++|+.+|+||+||.|.+||||.+...+...|.++..+.+.+|++|+||.+|+++|+++|+||+||.| .+
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n--~~ 82 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG--AG 82 (389)
T ss_dssp ----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECC--GG
T ss_pred ccccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECC--CC
Confidence 4455667889999999999999999999999988888999999988888999999999999999999999999999 89
Q ss_pred CccCCCCCcceecceeecCCCC-CCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCCeEE
Q 001361 389 GLLGHGNEMSLWLPKKLNGPLE-GIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTV 467 (1092)
Q Consensus 389 GqLG~g~~~~~~~P~~v~~~l~-~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~ 467 (1092)
||||.+.......|.++..... ..++++|+||.+|+++|+++|+||+||.|.+||||+++......|..|..+.+.+|+
T Consensus 83 GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~ 162 (389)
T 3kci_A 83 GRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVV 162 (389)
T ss_dssp GTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred CCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEE
Confidence 9999999888888988875321 235688999999999999999999999999999999999989999999999999999
Q ss_pred EEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeC--cEEEEEec
Q 001361 468 RAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGH--SLTVALTT 545 (1092)
Q Consensus 468 ~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~--~htlaLt~ 545 (1092)
+|+||.+|+++|+ .+|+||+||.|.+||||+++......|+.+..+...+|++|+||. .|+++|++
T Consensus 163 ~va~G~~hs~alt------------~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~ 230 (389)
T 3kci_A 163 DVAAGGAHSACVT------------AAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTD 230 (389)
T ss_dssp EEEECSSEEEEEE------------TTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEET
T ss_pred EEEeCcCeEEEEe------------CCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEcc
Confidence 9999999999998 599999999999999999999999999999999889999999995 89999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCC-ccceeeccccCCCCEEEEEEcCCEEEEEEcCCeEEEEeCCCCCCCCCCCCCCcccCc
Q 001361 546 TGHVYTMGSPVYGQLGDPKANG-KLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNFPS 624 (1092)
Q Consensus 546 dG~Vy~wG~N~~GQLG~~~~~~-~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG~Vy~WG~n~~GQLG~G~~~~~~~P~ 624 (1092)
+|+||+||.|.+||||.+.... ..|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|+
T Consensus 231 ~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~ 309 (389)
T 3kci_A 231 DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS-LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPR 309 (389)
T ss_dssp TTEEEEEECCGGGTTSSSSCCCEEEEEECGG-GTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCCCCccccEEecc-cCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCe
Confidence 9999999999999999987554 46777764 566789999999999999999999999999999999999999999999
Q ss_pred eeeeccCCceeeEEecCCcceeeeee
Q 001361 625 LVEALKDKQVKSIVCGTSFTAAICLH 650 (1092)
Q Consensus 625 ~V~~l~~~~V~~IacG~~~T~al~~~ 650 (1092)
+|..+.+.+|++|+||..|+++|+.+
T Consensus 310 ~v~~l~~~~v~~ia~G~~h~~al~~~ 335 (389)
T 3kci_A 310 QVQGLQGKKVIAIATGSLHCVCCTED 335 (389)
T ss_dssp ECGGGTTCCEEEEEECSSEEEEEETT
T ss_pred EeccCCCCCEEEEEeccCeEEEECCC
Confidence 99999999999999999999999864
No 8
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=3.6e-54 Score=506.79 Aligned_cols=321 Identities=24% Similarity=0.354 Sum_probs=277.6
Q ss_pred CCCEEEEEecCceEEEEEcCCeEEEEeCCCCCccCCCCC-CCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeC
Q 001361 304 VLDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVD-SDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWG 382 (1092)
Q Consensus 304 ~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~-~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG 382 (1092)
..++++|+||..|+++++++|+||+||.|.+||||++.. .....|.++..+. .|++|+||.+|+++|+++|+||+||
T Consensus 23 ~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~wG 100 (423)
T 3mvd_K 23 KAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFG 100 (423)
T ss_dssp ------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEEEE
T ss_pred cceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC--CceEEeeCCCeEEEEeCCCeEEEeE
Confidence 347889999999999999999999999999999999975 3456788888776 5899999999999999999999999
Q ss_pred CccCCCCccCCCCCcc--eecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeec--CCCcccCCCCCcccccceee
Q 001361 383 GSNCNFGLLGHGNEMS--LWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGD--GTFGVLGHGDRISVSTPREV 458 (1092)
Q Consensus 383 ~n~~~~GqLG~g~~~~--~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~--N~~GQLG~g~~~~~~~P~~V 458 (1092)
.| .+||||++.... ...|.++.. ..+|++|+||.+|+++|+++|+||+||. |.+||||++.......|.+
T Consensus 101 ~n--~~GqLG~~~~~~~~~~~P~~v~~---~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~- 174 (423)
T 3mvd_K 101 CN--DEGALGRDTSEDGSESKPDLIDL---PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPID- 174 (423)
T ss_dssp CC--SSSTTCSCCCSTTSSSSCEECCC---SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEE-
T ss_pred CC--CCcCCCCCCcCCccccCCeEEcC---CCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeE-
Confidence 99 899999987654 567887763 2479999999999999999999999999 9999999988776655554
Q ss_pred ecCCCCeEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCC-----------CcceeeEEecccCC
Q 001361 459 DSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDK-----------EARLVPTCVAALVE 527 (1092)
Q Consensus 459 ~~l~~~~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~-----------~~~~~P~~V~~l~~ 527 (1092)
.+.+.+|++|+||.+|+++|+ .+|+||+||.|.+||||++.. .....|..+..+..
T Consensus 175 -~~~~~~i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~ 241 (423)
T 3mvd_K 175 -LMEGTVCCSIASGADHLVILT------------TAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRA 241 (423)
T ss_dssp -SSTTCCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTC
T ss_pred -ecCCCcEEEEecCCCeEEEEe------------cCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCC
Confidence 466778999999999999998 599999999999999999764 34568999988888
Q ss_pred CCeEEEEeeCcEEEEE-ecCCcEEEEeCCCCCCCCCCCCC-Cc--cceeeccccCCCCEEEEEEcCCEEEEEEcCCeEEE
Q 001361 528 PNFCQVSCGHSLTVAL-TTTGHVYTMGSPVYGQLGDPKAN-GK--LPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYT 603 (1092)
Q Consensus 528 ~~I~~Ia~G~~htlaL-t~dG~Vy~wG~N~~GQLG~~~~~-~~--~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG~Vy~ 603 (1092)
.+|++|+||.+|++++ +.+|+||+||.|.+||||.+... .. .|..+. ...|++|+||.+|+++|+++|+||+
T Consensus 242 ~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~----~~~v~~ia~G~~ht~alt~~G~v~~ 317 (423)
T 3mvd_K 242 KPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE----LKDIRHIAGGQHHTVILTTDLKCSV 317 (423)
T ss_dssp CCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC----CCSEEEEEECSSEEEEEETTCCEEE
T ss_pred ccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC----CCCeEEEEcccCeEEEEeCCCcEEE
Confidence 8999999999999999 69999999999999999995433 22 344433 3579999999999999999999999
Q ss_pred EeCCCCCCCCCCCCCC-cccCceeeeccCCceeeEEecCCcceeeeee
Q 001361 604 WGKGANGRLGHGDTDD-RNFPSLVEALKDKQVKSIVCGTSFTAAICLH 650 (1092)
Q Consensus 604 WG~n~~GQLG~G~~~~-~~~P~~V~~l~~~~V~~IacG~~~T~al~~~ 650 (1092)
||.|.+||||+|+..+ ...|+.|+.+.+ .|++|+||..|++||+.+
T Consensus 318 wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~ 364 (423)
T 3mvd_K 318 VGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTID 364 (423)
T ss_dssp EECCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETT
T ss_pred EECCCCCCCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCC
Confidence 9999999999998766 468999998887 899999999999999854
No 9
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1e-52 Score=493.19 Aligned_cols=329 Identities=28% Similarity=0.446 Sum_probs=281.5
Q ss_pred cccccCCCC-cccccCCCCcEEEEcCCCCCcccCCCCCcCCccccccccccceEEecccCCCCEEEEEecCceEEEEEcC
Q 001361 245 AVSSSSQGS-GHDDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQ 323 (1092)
Q Consensus 245 ~~s~~s~G~-~~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~d 323 (1092)
.+..++.|. +..+++.+|+||+||.|. +||||.+... ......|..+.. ..+|++|+||..|+++|+++
T Consensus 60 ~i~~va~G~~hs~~l~~~G~v~~wG~n~-~GqLG~~~~~-------~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~ 129 (413)
T 1a12_A 60 DVVQAEAGGMHTVCLSKSGQVYSFGCND-EGALGRDTSV-------EGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDD 129 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCT-TSTTCSCCCS-------TTGGGSCEECCC--CSCEEEEEECSSEEEEEETT
T ss_pred CeEEEEeCCCeEEEEcCCCCEEEEECCC-CCCCCCCCCC-------CccccCCeEecC--CCcEEEEecCCCeEEEEcCC
Confidence 344455555 667999999999999999 9999998642 124567888843 33899999999999999999
Q ss_pred CeEEEEeC--CCCCccCCCCCCCC-CcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCccCCCCccCCCCCc---
Q 001361 324 GEVFSWGE--ELGGRLGHGVDSDV-SHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEM--- 397 (1092)
Q Consensus 324 G~Vy~wG~--N~~GqLG~g~~~~~-~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~--- 397 (1092)
|+||+||. |.+||||.+..... ..|.+| +...+|++|+||.+|+++|+++|+||+||.| .+||||.+...
T Consensus 130 G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n--~~GqLG~~~~~~~~ 205 (413)
T 1a12_A 130 GRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCG--EQGQLGRVPELFAN 205 (413)
T ss_dssp SCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECC--TTSTTCSCGGGTSS
T ss_pred CcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCC--CCCccCCCcccccc
Confidence 99999999 99999999876543 347777 4567899999999999999999999999999 89999987542
Q ss_pred --------ceecceeecCCC----CCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCC--
Q 001361 398 --------SLWLPKKLNGPL----EGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKG-- 463 (1092)
Q Consensus 398 --------~~~~P~~v~~~l----~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~-- 463 (1092)
....|..+..+. ...+|++|+||.+|+++|+++|+||+||.|.+||||+++......|..|..+.+
T Consensus 206 ~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~ 285 (413)
T 1a12_A 206 RGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNST 285 (413)
T ss_dssp SCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTT
T ss_pred ccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCC
Confidence 224675554321 346899999999999999999999999999999999999888899999998877
Q ss_pred CeEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCC-CCCcceeeEEecccCCCCeEEEEeeCcEEEE
Q 001361 464 LRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHG-DKEARLVPTCVAALVEPNFCQVSCGHSLTVA 542 (1092)
Q Consensus 464 ~~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g-~~~~~~~P~~V~~l~~~~I~~Ia~G~~htla 542 (1092)
.+|++|+||.+|+++|+ .+|+||+||.|.+||||++ +......|+.|..+. +|++|+||.+|++|
T Consensus 286 ~~v~~ia~G~~hs~al~------------~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~a 351 (413)
T 1a12_A 286 KSWVGFSGGQHHTVCMD------------SEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYA 351 (413)
T ss_dssp CCEEEEEECSSEEEEEE------------TTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEE
T ss_pred ceEEEEecccceEEEEe------------CCCCEEEeeCCCCCccCCCCCCccccCCEEecccC--ceeEEEECcceEEE
Confidence 67999999999999998 5999999999999999999 566778999998774 89999999999999
Q ss_pred EecCCcEEEEeCCCCCCCCCCCCC-Cccceeeccc-cCCCCEEEEEEcCCEEEEEEcCCeE
Q 001361 543 LTTTGHVYTMGSPVYGQLGDPKAN-GKLPTRVEGK-LTKNFVEEIACGDYHVAVLTSRTEV 601 (1092)
Q Consensus 543 Lt~dG~Vy~wG~N~~GQLG~~~~~-~~~P~~v~~~-l~~~~I~~Ia~G~~HslaLT~dG~V 601 (1092)
|+++|+||+||.|.+||||.+... ...|.++... +.+..|++|+||.+|+++|+.+|++
T Consensus 352 lt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 352 VTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp EETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred EeCCCCEEEecCCCCCCCCCCCCCCcccCeEccccccCCCeEEEEeeCCCcEEEEEecCCC
Confidence 999999999999999999998754 3468777652 4566899999999999999998864
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-53 Score=507.07 Aligned_cols=325 Identities=23% Similarity=0.373 Sum_probs=277.4
Q ss_pred CEEEEEecCceEEEEEcCCeEEEEeCCCCCccCCCCC---CCCCcceEeecc--CCCcEEEEEeCCCeEEEEEeCCcEEE
Q 001361 306 DVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVD---SDVSHPKLIDAL--KNINVELVACGEHHTCAVTLSGDMYT 380 (1092)
Q Consensus 306 ~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~---~~~~~P~~V~~l--~~~~I~~Ia~G~~hs~aLT~dG~Vy~ 380 (1092)
.|....++..|+++++++|+||+||.|.+||||+|.. .+...|.+++.+ .+.+|++|+||..|++||+++|+||+
T Consensus 11 ~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~ 90 (473)
T 3of7_A 11 HIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90 (473)
T ss_dssp TCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEE
T ss_pred hhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEE
Confidence 4566778889999999999999999999999999984 346678888766 46789999999999999999999999
Q ss_pred eCCccCCCCccCCCCCcc-----------------------eecceeecC--CC---CCCcEEEEEeCCCeEEEEEcCCc
Q 001361 381 WGGSNCNFGLLGHGNEMS-----------------------LWLPKKLNG--PL---EGIHVSSVSCGPWHTAVVTSAGQ 432 (1092)
Q Consensus 381 wG~n~~~~GqLG~g~~~~-----------------------~~~P~~v~~--~l---~~~~I~~IscG~~Ht~aLt~dG~ 432 (1092)
||.| .+||||.+.... ...|.+|.. .. .+.+|++|+||.+|+++|+++|+
T Consensus 91 wG~n--~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~ 168 (473)
T 3of7_A 91 WGCN--DVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGE 168 (473)
T ss_dssp EECC--TTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSC
T ss_pred eECC--CCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCe
Confidence 9999 899999987654 456777764 21 46789999999999999999999
Q ss_pred EEEeec--CCCcccCCCCC--cccccceeeecCCCCeEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCc
Q 001361 433 LFTFGD--GTFGVLGHGDR--ISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRL 508 (1092)
Q Consensus 433 Vy~wG~--N~~GQLG~g~~--~~~~~P~~V~~l~~~~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQL 508 (1092)
||+||. |.+||||++.. .....|..|..+.+.+|++|+||.+|+++|+ .+|+||+||.|.+|||
T Consensus 169 vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqL 236 (473)
T 3of7_A 169 VYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLD------------EEGMVFAWGNGQQNQL 236 (473)
T ss_dssp EEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTT
T ss_pred EEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEe------------CCCeEEEEeCCCCCCC
Confidence 999998 67899998543 4567899999998889999999999999998 5999999999999999
Q ss_pred CCCCCCc----ceeeEEecccCCCCeEEEEeeCcEEEEEecCCcEEEEeCCCCCCCCCCCCCC-----ccceeeccccCC
Q 001361 509 GHGDKEA----RLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANG-----KLPTRVEGKLTK 579 (1092)
Q Consensus 509 G~g~~~~----~~~P~~V~~l~~~~I~~Ia~G~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~-----~~P~~v~~~l~~ 579 (1092)
|++.... ...|..+.. .+|++|+||.+|++||+.+|+||+||.|.+||||.+.... ..|..+.. +.+
T Consensus 237 G~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~-~~~ 312 (473)
T 3of7_A 237 GRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLAL-PDN 312 (473)
T ss_dssp SSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCC-CTT
T ss_pred CCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccc-cCC
Confidence 9986543 456776643 6899999999999999999999999999999999887542 35777763 566
Q ss_pred CCEEEEEEcCCEEEEEEcCCeEEEEeCCCCCCCCCCCCC--------------CcccCceeeeccCCceeeEEecCCcce
Q 001361 580 NFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTD--------------DRNFPSLVEALKDKQVKSIVCGTSFTA 645 (1092)
Q Consensus 580 ~~I~~Ia~G~~HslaLT~dG~Vy~WG~n~~GQLG~G~~~--------------~~~~P~~V~~l~~~~V~~IacG~~~T~ 645 (1092)
..|++|+||.+|+++|+++|+||+||.|.+||||++... ....|+.|+.+. .|++|+||..|++
T Consensus 313 ~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~ 390 (473)
T 3of7_A 313 VVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSV 390 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEE
T ss_pred ccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEE
Confidence 789999999999999999999999999999999987531 224566666543 7999999999999
Q ss_pred eeeee
Q 001361 646 AICLH 650 (1092)
Q Consensus 646 al~~~ 650 (1092)
||+.+
T Consensus 391 al~~~ 395 (473)
T 3of7_A 391 AVAQN 395 (473)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 99853
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=3.7e-48 Score=432.03 Aligned_cols=248 Identities=26% Similarity=0.422 Sum_probs=214.3
Q ss_pred CEEEEEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCcc
Q 001361 306 DVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSN 385 (1092)
Q Consensus 306 ~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~ 385 (1092)
+|++|+||..|+++|+ +|+||+||.|.+||||.+. ....+|++|+||.+|+++|+ +|+||+||.|
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~------------~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n- 89 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA------------ATQSGVDAIAAGNYHSLALK-DGEVIAWGGN- 89 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG------------GGGSCCCEEEECSSEEEEEE-TTEEEEEECC-
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc------------cCCCCEEEEEeCCCEEEEEE-CCEEEEeeCC-
Confidence 7999999999999998 9999999999999999532 11237999999999999996 9999999999
Q ss_pred CCCCccCCCCCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCCe
Q 001361 386 CNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLR 465 (1092)
Q Consensus 386 ~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~ 465 (1092)
.+||||. |.++. .+|++|+||.+|+++|+ +|+||+||.|.+||||... . ...+
T Consensus 90 -~~Gqlg~--------P~~~~-----~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~--------~----~~~~ 142 (282)
T 3qhy_B 90 -EDGQTTV--------PAEAR-----SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA--------E----AQSG 142 (282)
T ss_dssp -TTSTTCC--------CGGGS-----SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG--------G----GGSS
T ss_pred -CCCCCCC--------CcccC-----CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc--------c----CCCC
Confidence 8999985 44442 36999999999999999 9999999999999998421 1 1236
Q ss_pred EEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCcEEEEEec
Q 001361 466 TVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTT 545 (1092)
Q Consensus 466 I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLt~ 545 (1092)
|++|+||.+|+++|+ +|+||+||.|.+||||. |..+ ..+|++|+||.+|+++| +
T Consensus 143 i~~i~~G~~~~~~l~-------------~G~v~~wG~n~~gqlg~--------p~~~----~~~v~~i~~G~~hs~al-~ 196 (282)
T 3qhy_B 143 VTALDGGVYTALAVK-------------NGGVIAWGDNYFGQTTV--------PAEA----QSGVDDVAGGIFHSLAL-K 196 (282)
T ss_dssp EEEEEECSSEEEEEE-------------TTEEEEEECCTTSTTSC--------CGGG----GSSEEEEEECSSEEEEE-E
T ss_pred eEEEEcccCEEEEEE-------------CCEEEEecCCCCCCCCC--------ceec----CCCeEEEEecCCEEEEE-E
Confidence 999999999999996 79999999999999983 2222 36899999999999999 8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEEEcCCEEEEEEcCCeEEEEeCCCCCCCCCCCCCCcccCce
Q 001361 546 TGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNFPSL 625 (1092)
Q Consensus 546 dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG~Vy~WG~n~~GQLG~G~~~~~~~P~~ 625 (1092)
+|+||+||.|.+||||.+.. . ...|++|+||.+|+++|+ +|+||+||.|.+||++..
T Consensus 197 ~G~v~~wG~n~~gqlg~p~~-------~-----~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~---------- 253 (282)
T 3qhy_B 197 DGKVIAWGDNRYKQTTVPTE-------A-----LSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ---------- 253 (282)
T ss_dssp TTEEEEEECCTTSTTCCCGG-------G-----GSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS----------
T ss_pred CCeEEEEECCCCCCCCCCcc-------c-----CCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC----------
Confidence 99999999999999996431 1 245999999999999999 999999999999998751
Q ss_pred eeeccCCceeeEEecCCcceeeeee
Q 001361 626 VEALKDKQVKSIVCGTSFTAAICLH 650 (1092)
Q Consensus 626 V~~l~~~~V~~IacG~~~T~al~~~ 650 (1092)
..|++|+||..|++||+.+
T Consensus 254 ------~~v~~iaaG~~h~~al~~~ 272 (282)
T 3qhy_B 254 ------SGVSSIEAGPNAAYALKGG 272 (282)
T ss_dssp ------SCEEEEEECSSCEEEEEC-
T ss_pred ------CCcEEEEECcCeEEEEecC
Confidence 2689999999999999964
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2.8e-42 Score=384.62 Aligned_cols=248 Identities=24% Similarity=0.360 Sum_probs=205.6
Q ss_pred ccCCCC-cccccCCCCcEEEEcCCCCCcccCCCCCcCCccccccccccceEEecccCCCCEEEEEecCceEEEEEcCCeE
Q 001361 248 SSSQGS-GHDDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEV 326 (1092)
Q Consensus 248 ~~s~G~-~~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG~V 326 (1092)
.++.|. +..+++ +|+||+||.|. +||||... . ...+|++|+||..|+++|+ +|+|
T Consensus 28 ~ia~G~~h~~~l~-~G~v~~wG~n~-~Gqlg~p~-----------------~----~~~~i~~ia~G~~hs~~l~-~G~v 83 (282)
T 3qhy_B 28 AIAGGYFHGLALK-GGKVLGWGANL-NGQLTMPA-----------------A----TQSGVDAIAAGNYHSLALK-DGEV 83 (282)
T ss_dssp EEEECSSEEEEEE-TTEEEEEECCS-SSTTSCCG-----------------G----GGSCCCEEEECSSEEEEEE-TTEE
T ss_pred EEEeCCCeEEEEE-CCEEEEEeCCC-CCCCCCCc-----------------c----CCCCEEEEEeCCCEEEEEE-CCEE
Confidence 444555 556887 99999999999 99998532 1 1237899999999999996 9999
Q ss_pred EEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCccCCCCccCCCCCcceecceeec
Q 001361 327 FSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLN 406 (1092)
Q Consensus 327 y~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~ 406 (1092)
|+||.|.+||||. |..+ ..+|++|+||.+|+++|+ +|+||+||.| .+||||.. ...
T Consensus 84 ~~wG~n~~Gqlg~--------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n--~~gqlg~~--------~~~- 139 (282)
T 3qhy_B 84 IAWGGNEDGQTTV--------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDD--SDGQTTVP--------AEA- 139 (282)
T ss_dssp EEEECCTTSTTCC--------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECC--TTSTTSCC--------GGG-
T ss_pred EEeeCCCCCCCCC--------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCC--CCCcCCCC--------ccC-
Confidence 9999999999995 3332 247999999999999999 9999999999 89999842 211
Q ss_pred CCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCCeEEEEecCCceEEEEEEeeecC
Q 001361 407 GPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGS 486 (1092)
Q Consensus 407 ~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLte~~~~~ 486 (1092)
..+|++|+||.+|+++|+ +|+||+||.|.+||||. |..+ ..+|++|+||.+|+++| +
T Consensus 140 ----~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~----~~~v~~i~~G~~hs~al-~----- 196 (282)
T 3qhy_B 140 ----QSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA----QSGVDDVAGGIFHSLAL-K----- 196 (282)
T ss_dssp ----GSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG----GSSEEEEEECSSEEEEE-E-----
T ss_pred ----CCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec----CCCeEEEEecCCEEEEE-E-----
Confidence 236999999999999999 89999999999999983 3222 24799999999999999 6
Q ss_pred CCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCcEEEEEecCCcEEEEeCCCCCCCCCCCCC
Q 001361 487 SSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKAN 566 (1092)
Q Consensus 487 s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~ 566 (1092)
+|+||+||.|.+||||.+.. . ..+|++|+||..|+++|+ +|+||+||.|.+||++.+
T Consensus 197 -------~G~v~~wG~n~~gqlg~p~~----------~--~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~--- 253 (282)
T 3qhy_B 197 -------DGKVIAWGDNRYKQTTVPTE----------A--LSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ--- 253 (282)
T ss_dssp -------TTEEEEEECCTTSTTCCCGG----------G--GSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS---
T ss_pred -------CCeEEEEECCCCCCCCCCcc----------c--CCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC---
Confidence 99999999999999995431 1 257999999999999999 999999999999998741
Q ss_pred CccceeeccccCCCCEEEEEEcCCEEEEEEcCCeEE
Q 001361 567 GKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVY 602 (1092)
Q Consensus 567 ~~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG~Vy 602 (1092)
..|++|+||..|+++|+.+++.+
T Consensus 254 -------------~~v~~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 254 -------------SGVSSIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp -------------SCEEEEEECSSCEEEEEC-----
T ss_pred -------------CCcEEEEECcCeEEEEecCCCCC
Confidence 25999999999999999988654
No 13
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=99.89 E-value=1.2e-23 Score=207.44 Aligned_cols=114 Identities=26% Similarity=0.467 Sum_probs=100.3
Q ss_pred hhHHHHHHHHhcCCeEEEEecCCCceeEeEEEeCCCCeEEEec------CCccceEEccceeecccCCCChhhhcCCCCC
Q 001361 13 RDIELAITALKKGAHLLKYGRRGKPKFCPFRLANDESILIWIS------GKEEKHLKLSHVSRIIPGQRTPIFQRYPRPE 86 (1092)
Q Consensus 13 ~~i~~~l~~L~~Gt~l~K~~~~~kp~~r~f~L~~d~~~l~W~~------~k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~ 86 (1092)
.+++|+|.+|++|+.|+||++++++|.|+|+|++| .+++|++ ++.++.|+|++|++||+|++|+.|+++....
T Consensus 4 ~~~~q~l~~L~~Gt~l~K~~~~~~~k~r~f~l~~~-~~~~w~~s~~~~~~~~~~~i~i~~I~eIr~G~~s~~~~~~~~~~ 82 (131)
T 1mai_A 4 LQDDPDLQALLKGSQLLKVKSSSWRRERFYKLQED-CKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDI 82 (131)
T ss_dssp TTSCHHHHHHHHCEEEEEESSSSCEEEEEEEECTT-SSEEEECCCCTTCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTS
T ss_pred CCHHHHHHHHHcCCeEEEECCCCcceeEEEEECCC-CCEEEeCCcCCCCCCcCcEEEHhhhHHHHCCCCCHHHHhhhhcC
Confidence 45689999999999999999999899999999999 5555774 2357889999999999999999999998877
Q ss_pred CCCCeEEEEEcC--ceeEEEeCCHHHHHHHHHHHHHHHHcccc
Q 001361 87 KEYQSFSLIYND--RSLDLICKDKDEAEVWFTGLKALISRSHY 127 (1092)
Q Consensus 87 ~~~~~FSiiy~~--rsLDLia~~~~e~~~Wv~gL~~Li~~~~~ 127 (1092)
++++||||||++ ++|||||+|++||+.|++||++|+...++
T Consensus 83 ~~~~~FsIiy~~~~k~LdlvA~s~~e~~~Wv~gL~~L~~~~~~ 125 (131)
T 1mai_A 83 PEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKIIHHSGS 125 (131)
T ss_dssp CGGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHHC----
T ss_pred CccceEEEEECCCCceEEEEeCCHHHHHHHHHHHHHHHHhhhh
Confidence 899999999987 79999999999999999999999977654
No 14
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=99.48 E-value=5.6e-14 Score=175.78 Aligned_cols=107 Identities=16% Similarity=0.333 Sum_probs=92.2
Q ss_pred HHHHhcCCeEEEEecC-CCceeEeEEEeCCCCeEEEecCCc-cceEEccceeecccCCCChh-----hhcCCC-----CC
Q 001361 19 ITALKKGAHLLKYGRR-GKPKFCPFRLANDESILIWISGKE-EKHLKLSHVSRIIPGQRTPI-----FQRYPR-----PE 86 (1092)
Q Consensus 19 l~~L~~Gt~l~K~~~~-~kp~~r~f~L~~d~~~l~W~~~k~-~~~i~l~~I~eVr~G~~t~~-----f~~~~~-----~~ 86 (1092)
-..|++|+.|+||.++ +++++++|+||+|...|.|.+.++ ...|+|++|++||.|+.|+. |++... ..
T Consensus 18 p~~L~~Gt~f~K~~~~~~~~k~~~frLD~d~~~L~W~~~~ke~~~l~Is~IkeIR~G~~a~~pKd~klr~~~~~~~~~~~ 97 (885)
T 3ohm_B 18 VETLRRGSKFIKWDEETSSRNLVTLRVDPNGFFLYWTGPNMEVDTLDISSIRDTRTGRYARLPKDPKIREVLGFGGPDAR 97 (885)
T ss_dssp CHHHHHCEEEEEECTTCCSCCEEEEEECTTSCEEEEECGGGCEEEEEGGGEEEEEETTTSCCCCSHHHHHCC--------
T ss_pred cHHHhCCCeEEEECCCCCCcEEEEEEECCCCCEEEEeCCCCCCceEeeehhhhhhcCcCCCCCccHHHHHHhccCcccCc
Confidence 3689999999999777 689999999999999999998543 45799999999999999877 777643 57
Q ss_pred CCCCeEEEEEcC-----ceeEEEeCCHHHHHHHHHHHHHHHHcc
Q 001361 87 KEYQSFSLIYND-----RSLDLICKDKDEAEVWFTGLKALISRS 125 (1092)
Q Consensus 87 ~~~~~FSiiy~~-----rsLDLia~~~~e~~~Wv~gL~~Li~~~ 125 (1092)
.+++||||||+. ++|||||+++++|+.|++||++|+.+.
T Consensus 98 ~e~r~fTIvyg~d~~n~~~LdLVA~s~e~a~~W~~gL~~L~~~~ 141 (885)
T 3ohm_B 98 LEEKLMTVVSGPDPVNTVFLNFMAVQDDTAKVWSEELFKLAMNI 141 (885)
T ss_dssp -CTTEEEEEECSSGGGCEEEEEEESSSSHHHHHHHHHHHHHHCH
T ss_pred ccccEEEEEECCCCccceEEEEEeCChHHHHHHHHHHHHHHhhh
Confidence 889999999986 479999999999999999999999875
No 15
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=99.47 E-value=7e-14 Score=174.97 Aligned_cols=108 Identities=13% Similarity=0.261 Sum_probs=92.9
Q ss_pred HHHHhcCCeEEEEecCC-CceeEeEEEeCCCCeEEEecC-CccceEEccceeecccCCCCh------hhhcC----CCCC
Q 001361 19 ITALKKGAHLLKYGRRG-KPKFCPFRLANDESILIWISG-KEEKHLKLSHVSRIIPGQRTP------IFQRY----PRPE 86 (1092)
Q Consensus 19 l~~L~~Gt~l~K~~~~~-kp~~r~f~L~~d~~~l~W~~~-k~~~~i~l~~I~eVr~G~~t~------~f~~~----~~~~ 86 (1092)
..+|++|+.|+|+++++ +++.|+|+|++|...|.|.+. ++++.|+|++|++||.|+.|+ .++++ .+..
T Consensus 14 ~~~L~~Gt~~~K~~~~~~~~k~~~frLd~d~~~l~W~~~~k~~~~l~I~~IkeIR~G~~s~~pk~~~~~e~~~~~~~~~~ 93 (799)
T 2zkm_X 14 KAYLSQGERFIKWDDETTVASPVILRVDPKGYYLYWTYQSKEMEFLDITSIRDTRFGKFAKMPKSQKLRDVFNMDFPDNS 93 (799)
T ss_dssp CHHHHHCEEEEEECTTTCCEEEEEEEECTTSCEEEEEETTSCEEEEEGGGEEEEEEGGGSCCCCSHHHHHHTTCSSTTCC
T ss_pred cHHHhCCCEEEEEcCCCcceeEEEEEEcCCCCEEEEccCCCcCceEeeeeeHHhhcCCCCCCCchHHHHHHhcccCcccc
Confidence 56899999999998876 469999999999999999974 556889999999999999996 34444 2345
Q ss_pred CCCCeEEEEEcC-----ceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 87 KEYQSFSLIYND-----RSLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 87 ~~~~~FSiiy~~-----rsLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
.+++||||||+. ++|||||+++++|+.|++||++|+....
T Consensus 94 ~e~~~fTIvyg~~~~~l~~L~lvA~s~~ea~~Wv~GL~~L~~~~~ 138 (799)
T 2zkm_X 94 FLLKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVKHPL 138 (799)
T ss_dssp GGGTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHHCTT
T ss_pred cccceEEEEECCCccceeEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 788999999976 4799999999999999999999998754
No 16
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.3e-14 Score=129.77 Aligned_cols=73 Identities=30% Similarity=0.605 Sum_probs=65.1
Q ss_pred eeccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCC----CCCeeeCccchhhhhcccC
Q 001361 649 LHKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNP----NKPYRVCDNCFGKLTKATE 721 (1092)
Q Consensus 649 ~~kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~----~k~~RVC~~C~~~l~~~~~ 721 (1092)
...|++|.+...|+.|...|++++|||||++||.+||..||+++++++.++... .+++|||+.||.+|.+...
T Consensus 5 ~~~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~~~~ 81 (84)
T 1x4u_A 5 SSGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKSGP 81 (84)
T ss_dssp CCCSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHSCCS
T ss_pred CCccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhccCC
Confidence 357999999999999999999999999999999999999999999888877542 3789999999999987544
No 17
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=99.46 E-value=7.4e-14 Score=173.85 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=91.2
Q ss_pred HHHhcCCeEEEEecCCCc-eeEeEEEeCCCCeEEEecC-Ccc-ceEEccceeecccCCCChh-----hhc----CC--CC
Q 001361 20 TALKKGAHLLKYGRRGKP-KFCPFRLANDESILIWISG-KEE-KHLKLSHVSRIIPGQRTPI-----FQR----YP--RP 85 (1092)
Q Consensus 20 ~~L~~Gt~l~K~~~~~kp-~~r~f~L~~d~~~l~W~~~-k~~-~~i~l~~I~eVr~G~~t~~-----f~~----~~--~~ 85 (1092)
..|++|+.|+|+++++++ +.|+|+||+|...|.|++. |+. +.|+|++|++||.|++|+. +++ +. ..
T Consensus 20 ~~L~~G~~~~K~~~~s~~~~~~~f~lD~d~~~L~W~~~~k~~~~~l~I~~I~eVR~G~~t~~pk~~klr~~~~~~g~~~~ 99 (816)
T 3qr0_A 20 EQLIKGDKFLKWEEGSSGFIEILLRVDPKGYFLYWKIEGKEDTQLLDLAYVRDIRCAKYAKPPKDKKIKEAGTNFGSSNI 99 (816)
T ss_dssp HHHHHCEEEEEECTTCCCCEEEEEEECTTSCEEEECCTTCSSCEEEEGGGEEEEEEGGGSCCCCSHHHHHHHHHSSCTTS
T ss_pred HHHhCCCeEEEECCCCCcceeEEEEEcCCCCEEEEeCCCCCcCcEEEeeeeeeeecCCcCCCCccHHHHHHHHhcCCCcc
Confidence 579999999999999887 6899999999999999985 444 6899999999999999853 333 32 23
Q ss_pred CCCCCeEEEEEcC-----ceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 86 EKEYQSFSLIYND-----RSLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 86 ~~~~~~FSiiy~~-----rsLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
..+++|||||||. ++|||||.++++|+.|++||++|+.+.+
T Consensus 100 ~~e~r~fTIvyg~~~~nL~~l~LvA~s~e~A~~W~~gL~~L~~~~~ 145 (816)
T 3qr0_A 100 PLQDKCVTICHGYNYIDLEWTHLVAENSSVAKKWSEEVFSYAYNLL 145 (816)
T ss_dssp CHHHHEEEEEECSSSSSCEEEEEEESSHHHHHHHHHHHHHHHTCHH
T ss_pred cccccEEEEEECCCcccceEEEEeeCCHHHHHHHHHHHHHHHHHHH
Confidence 5578999999986 4459999999999999999999998754
No 18
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=99.38 E-value=1.2e-13 Score=124.33 Aligned_cols=73 Identities=36% Similarity=0.808 Sum_probs=56.5
Q ss_pred eeeeeeccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhhcccC
Q 001361 645 AAICLHKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKATE 721 (1092)
Q Consensus 645 ~al~~~kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~~~~~ 721 (1092)
.+|....|++|.+...|+.|+..|+++++||||++||.+||..|++...+++. ..+|+|||+.||..|.+...
T Consensus 6 ~~~~~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~----~~~~~RVC~~C~~~l~~~~~ 78 (82)
T 2yw8_A 6 QALKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPS----YPKPVRVCDSCHTLLLQRCS 78 (82)
T ss_dssp ---------CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTT----CSSCEEECHHHHHHTTC---
T ss_pred hhcCCCccccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCC----CCCcCEECHHHHHHHHHhcc
Confidence 34566789999999999999999999999999999999999999999877654 26899999999999876554
No 19
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=99.37 E-value=1.2e-13 Score=124.99 Aligned_cols=69 Identities=33% Similarity=0.762 Sum_probs=62.4
Q ss_pred eeccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhhcc
Q 001361 649 LHKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKA 719 (1092)
Q Consensus 649 ~~kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~~~ 719 (1092)
...|++|.+...|+.|...|++++|||||+.||.+||..||+.+.+++.++. .+|+|||+.||..|...
T Consensus 12 ~~~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~--~~~~RVC~~C~~~l~~~ 80 (84)
T 1z2q_A 12 KGYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGI--TEPERVCDACYLALRSS 80 (84)
T ss_dssp CSCCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTE--EEEEECCHHHHHHHHTS
T ss_pred CCccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCC--CCCCEECHHHHHHHhhc
Confidence 3479999999999999999999999999999999999999999988876653 58899999999998754
No 20
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=99.35 E-value=2.3e-12 Score=135.02 Aligned_cols=109 Identities=26% Similarity=0.472 Sum_probs=90.2
Q ss_pred HHHHHHHhcCCeEEEEe-cCCCceeEeEEEeCCCCeEEEecCCc-----------cceEEccceeecccCCCChhhhcCC
Q 001361 16 ELAITALKKGAHLLKYG-RRGKPKFCPFRLANDESILIWISGKE-----------EKHLKLSHVSRIIPGQRTPIFQRYP 83 (1092)
Q Consensus 16 ~~~l~~L~~Gt~l~K~~-~~~kp~~r~f~L~~d~~~l~W~~~k~-----------~~~i~l~~I~eVr~G~~t~~f~~~~ 83 (1092)
+|-|..|++|++|.|++ ++.+.+.+|++|+++.+.|.|....+ ...|+|++|++|+.|..++.++...
T Consensus 26 eQRi~~L~~G~~F~k~~~~r~~~k~~f~rLs~n~k~L~y~d~~~~~~~~p~ld~l~~kI~ls~Is~V~sg~~~p~~~~~~ 105 (203)
T 3a98_B 26 QQRLNRLVEGTCFRKLNARRRQDKFWYCRLSPNHKVLHYGDLEESPQGEVPHDSLQDKLPVADIKAVVTGKDCPHMKEKG 105 (203)
T ss_dssp HHHHHHHHHCEEEECSSCCTTCCSEEEEEECTTSSEEEEEECCBCSSCBCCBCCSCCEEEGGGEEEEEEGGGSTTC----
T ss_pred HHHHHHHHCCCeEeccCCccccCceEEEEECCCCceEEEccccccccCCCChhhcccceeHhhhhHhhcCCCCccccccc
Confidence 56799999999999984 34556788999999999999987432 3579999999999999999886532
Q ss_pred ----CCCCCCCeEEEEEcC-ceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 84 ----RPEKEYQSFSLIYND-RSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 84 ----~~~~~~~~FSiiy~~-rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
.....+++|||+|+. .+|||+|.|++++..|++||++|+..
T Consensus 106 ~~k~~~~~~~laFSii~~~~~~L~fvA~s~~~~~~W~DGL~~Llg~ 151 (203)
T 3a98_B 106 ALKQNKEVLELAFSILYDSNCQLNFIAPDKHEYCIWTDGLNALLGK 151 (203)
T ss_dssp ----CCTTGGGEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHTTC
T ss_pred cccccCcccceEEEEecCCCceEEEecCCHHHHHHHHHHHHHHhcC
Confidence 233456899999976 89999999999999999999999973
No 21
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=99.32 E-value=3.7e-13 Score=123.25 Aligned_cols=70 Identities=31% Similarity=0.819 Sum_probs=61.6
Q ss_pred eeccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhhcccCC
Q 001361 649 LHKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKATET 722 (1092)
Q Consensus 649 ~~kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~~~~~~ 722 (1092)
...|+++.+...|..|...|+++++||||++||.+||..|++.+..++.+ .+|+|||+.||..|.+...-
T Consensus 11 ~p~W~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~----~~~~RVC~~C~~~l~~~~~~ 80 (90)
T 3t7l_A 11 QPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYL----EKEARVCVVCYETISKAQAF 80 (90)
T ss_dssp CCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTT----TEEEEECHHHHHHHHHHC--
T ss_pred CCcCcccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCC----CCCCeECHHHHHHHHHHhhh
Confidence 34799999999999999999999999999999999999999999776542 47899999999999877653
No 22
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=99.30 E-value=7.3e-13 Score=128.70 Aligned_cols=65 Identities=37% Similarity=0.909 Sum_probs=59.0
Q ss_pred eeccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhh
Q 001361 649 LHKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLT 717 (1092)
Q Consensus 649 ~~kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~ 717 (1092)
...|+++.+...|+.|...|+++++||||++||.+||..||+...+.+. ..+|+|||+.||..|.
T Consensus 60 ~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~----~~~p~RVC~~C~~~l~ 124 (125)
T 1joc_A 60 NRKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPS----SKKPVRVCDACFNDLQ 124 (125)
T ss_dssp HCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTT----CSSCEEECHHHHHHTT
T ss_pred CCccccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCccccCC----CCCCCEeCHHHHHHhc
Confidence 3579999999999999999999999999999999999999999876653 3689999999999875
No 23
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=99.25 E-value=1.1e-12 Score=115.40 Aligned_cols=66 Identities=29% Similarity=0.712 Sum_probs=57.0
Q ss_pred eeccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhhcc
Q 001361 649 LHKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKA 719 (1092)
Q Consensus 649 ~~kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~~~ 719 (1092)
...|+++ ..|+.|+..|++++|||||+.||.+||..||++++.++.++. .+|+|||+.||..|...
T Consensus 5 ~p~W~~~---~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~--~~~~RVC~~C~~~l~~i 70 (73)
T 1vfy_A 5 PADWIDS---DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGI--YEPVRVCDSCFEDYEFI 70 (73)
T ss_dssp --CCCCC---SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTE--EEEEEECHHHHHHHHHH
T ss_pred CCcCccC---CcccCCCCccCCccccccCCCCCEEEcccccCCeEEcccCCC--CCCCEECHHHHHHHHHH
Confidence 4579886 479999999999999999999999999999999988887764 47899999999988643
No 24
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=99.23 E-value=5.8e-12 Score=114.65 Aligned_cols=64 Identities=30% Similarity=0.690 Sum_probs=57.0
Q ss_pred ccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhhcccC
Q 001361 655 GVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKATE 721 (1092)
Q Consensus 655 ~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~~~~~ 721 (1092)
..+...|+.|...|+++++||||++||.+||..|++.+++++.++ .+++|||+.||..|.....
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g---~~~~RVC~~C~~~l~~~~~ 69 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAG---NTQQKVCKQCHTILTRGSS 69 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTT---SEEEEECHHHHHHHHHCCC
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccC---CCcCEECHHHHHHHHhccc
Confidence 345678999999999999999999999999999999998888765 4789999999999987654
No 25
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.10 E-value=1.3e-11 Score=132.34 Aligned_cols=68 Identities=34% Similarity=0.864 Sum_probs=57.9
Q ss_pred eeccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhhcccC
Q 001361 649 LHKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKATE 721 (1092)
Q Consensus 649 ~~kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~~~~~ 721 (1092)
...|+++ ..|..|+..|++++|||||++||.+||..||+++...+.++. .+|+|||+.||..|.+..+
T Consensus 158 ~p~W~~~---~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~--~~~~RVC~~C~~~l~~~~e 225 (226)
T 3zyq_A 158 APDWVDA---EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGI--EKEVRVCEPCYEQLNRKAE 225 (226)
T ss_dssp CCCCCCC---SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTE--EEEEEECHHHHHHHCC---
T ss_pred ccccccC---CCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCC--CCCCEeCHHHHHHhhhhcc
Confidence 4578865 589999999999999999999999999999999988877654 5789999999999987654
No 26
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=99.07 E-value=2.5e-11 Score=129.86 Aligned_cols=65 Identities=37% Similarity=0.984 Sum_probs=57.5
Q ss_pred eeccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhhc
Q 001361 649 LHKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTK 718 (1092)
Q Consensus 649 ~~kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~~ 718 (1092)
...|+++ ..|+.|+..|++++|||||++||.+||..||+...+.+..+. .+|+|||+.||..|.+
T Consensus 155 ~~~W~~~---~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~--~~~~RvC~~C~~~l~~ 219 (220)
T 1dvp_A 155 APNWADG---RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGI--EKEVRVCDGCFAALQR 219 (220)
T ss_dssp CCCCCCC---SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTE--EEEEEECHHHHHHHHH
T ss_pred cccCCCC---CccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCCC--CCCCEeCHHHHHHHhc
Confidence 4579865 689999999999999999999999999999999988877654 5899999999998864
No 27
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=99.03 E-value=4.6e-11 Score=114.31 Aligned_cols=59 Identities=24% Similarity=0.439 Sum_probs=44.3
Q ss_pred ccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhhcc
Q 001361 651 KWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKA 719 (1092)
Q Consensus 651 kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~~~ 719 (1092)
-|.++.+...|+.|+..|++++|||||++||.+||..||+++.. ++|||+.||..+...
T Consensus 12 ~~~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~----------~vRVC~~C~~~~~~~ 70 (120)
T 1y02_A 12 FPSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN----------GPRLCLLCQRFRATA 70 (120)
T ss_dssp --------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--------------CCEEHHHHHHHHTT
T ss_pred CCcCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC----------CceECHHHHHHHhcc
Confidence 37788899999999999999999999999999999999998853 389999999987543
No 28
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=98.86 E-value=2.4e-10 Score=134.46 Aligned_cols=67 Identities=33% Similarity=0.736 Sum_probs=0.0
Q ss_pred eeccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhhhc
Q 001361 649 LHKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTK 718 (1092)
Q Consensus 649 ~~kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l~~ 718 (1092)
...|+++.+...|..|+.+|++.+|+|||++||.+||..||+++.+.+... .+++|||+.||..|.+
T Consensus 366 ~p~w~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~---~~~~rvC~~C~~~l~~ 432 (434)
T 3mpx_A 366 PPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLK---DRMAKVCDGCFGELKK 432 (434)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CCcCCCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCC---CCcCEecHHHHHHHHh
Confidence 357999999999999999999999999999999999999999987765333 5889999999999865
No 29
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=97.85 E-value=0.00012 Score=74.23 Aligned_cols=85 Identities=15% Similarity=0.271 Sum_probs=64.7
Q ss_pred eeEeEEEeCCCCeEEEecCC-----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCceeEEEeCCHHHHH
Q 001361 38 KFCPFRLANDESILIWISGK-----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAE 112 (1092)
Q Consensus 38 ~~r~f~L~~d~~~l~W~~~k-----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~rsLDLia~~~~e~~ 112 (1092)
+.|+|.|..+ .|.++.++ ....|+|..|..|..-.... .........+|.|+..+|++-|.|+|++|++
T Consensus 37 KkRwFVL~~~--~L~Yyk~~~~~~~~~G~I~L~~~~~v~~~~~~~----~~~~~~~~~~f~i~t~~rt~~l~A~s~~e~~ 110 (164)
T 2lul_A 37 KERLFVLTKS--MLTYYEGRAEKKYRKGFIDVSKIKCVEIVKNDD----GVIPCQNKYPFQVVHDANTLYIFAPSPQSRD 110 (164)
T ss_dssp EEEEEEEESS--EEEEECCCSSSCCCCCEEEGGGCCEEEECCCCS----SSCCSSSCSEEEEECSSCEEEEECSSHHHHH
T ss_pred eeEEEEEECC--EEEEEeccCcccccccEEEEeeeEEEEeccccc----cCcccccceeEEEecCCcEEEEECCCHHHHH
Confidence 6799999865 78887542 23479999887776543321 1123445679999999999999999999999
Q ss_pred HHHHHHHHHHHccccc
Q 001361 113 VWFTGLKALISRSHYR 128 (1092)
Q Consensus 113 ~Wv~gL~~Li~~~~~~ 128 (1092)
.|+.+|+.++...+..
T Consensus 111 ~Wi~aL~~~i~~n~~~ 126 (164)
T 2lul_A 111 LWVKKLKEEIKNNNNI 126 (164)
T ss_dssp HHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHChhh
Confidence 9999999999876643
No 30
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.64 E-value=0.00015 Score=68.33 Aligned_cols=94 Identities=21% Similarity=0.287 Sum_probs=68.6
Q ss_pred EEEEec-CCCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCceeE
Q 001361 28 LLKYGR-RGKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDRSLD 102 (1092)
Q Consensus 28 l~K~~~-~~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~rsLD 102 (1092)
|.|-+. ...-+.|+|.|.++...|.|+... ....|+|.++..|...... ...+.......||.|...+|++.
T Consensus 14 L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~---~~~~~~~~~~~~F~i~~~~r~~~ 90 (117)
T 1v5u_A 14 LYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPT---IGAPKTVDEKAFFDVKTTRRVYN 90 (117)
T ss_dssp EEECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSCCCEEEGGGEEEEECCCCC---TTSCSSSCTTTCEEEEESSCEEE
T ss_pred EEecCCCCCCceeeEEEEECCCCEEEEeecCCCCccceEEEccCcEEEeecCcc---ccccccCCCCeEEEEECCCceEE
Confidence 445433 233478999999744789888643 4567999999888765421 11122244458999988889999
Q ss_pred EEeCCHHHHHHHHHHHHHHHHc
Q 001361 103 LICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 103 Lia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
|.|++++|++.|+..|+..+..
T Consensus 91 l~a~s~~e~~~Wi~al~~~i~~ 112 (117)
T 1v5u_A 91 FCAQDVPSAQQWVDRIQSCLSS 112 (117)
T ss_dssp EECSSHHHHHHHHHHHHTTCCC
T ss_pred EECCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999887754
No 31
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=97.50 E-value=0.00041 Score=66.51 Aligned_cols=93 Identities=24% Similarity=0.273 Sum_probs=67.8
Q ss_pred hcCCeEEEEec-CCCceeEeEEEeCCCCeEEEecC----CccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc
Q 001361 23 KKGAHLLKYGR-RGKPKFCPFRLANDESILIWISG----KEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN 97 (1092)
Q Consensus 23 ~~Gt~l~K~~~-~~kp~~r~f~L~~d~~~l~W~~~----k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~ 97 (1092)
+.|- |.|-+. ...-+.|+|.|..+ .|.|+.+ +....|+|.++..|..... .....||.|+..
T Consensus 20 ~~G~-L~K~g~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~----------~~~~~~F~i~~~ 86 (126)
T 1fao_A 20 KEGY-LTKQGGLVKTWKTRWFTLHRN--ELKYFKDQMSPEPIRILDLTECSAVQFDYS----------QERVNCFCLVFP 86 (126)
T ss_dssp EEEE-EEEECSSSCCEEEEEEEEETT--EEEEESSTTCSSCSEEEEGGGCCEEEEECS----------SSSSSEEEEEET
T ss_pred EEEE-EEEcCCCCCCcccEEEEEECC--EEEEeCCCCCCCceeEEEccceEEEEeccc----------CCCCCEEEEEeC
Confidence 4444 445433 33448899999865 6888753 2456799998887765431 223579999999
Q ss_pred CceeEEEeCCHHHHHHHHHHHHHHHHccccc
Q 001361 98 DRSLDLICKDKDEAEVWFTGLKALISRSHYR 128 (1092)
Q Consensus 98 ~rsLDLia~~~~e~~~Wv~gL~~Li~~~~~~ 128 (1092)
++++-|.|++++|++.|+..|+..+...+..
T Consensus 87 ~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~~ 117 (126)
T 1fao_A 87 FRTFYLCAKTGVEADEWIKILRWKLSQIRKQ 117 (126)
T ss_dssp TEEEEEECSSHHHHHHHHHHHHHHHHTC---
T ss_pred CcEEEEECCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999886544
No 32
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.48 E-value=0.00072 Score=64.42 Aligned_cols=88 Identities=18% Similarity=0.121 Sum_probs=66.5
Q ss_pred eEEEEec---CCCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCc
Q 001361 27 HLLKYGR---RGKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDR 99 (1092)
Q Consensus 27 ~l~K~~~---~~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~r 99 (1092)
.|.|-+. ...=+.|+|.|..+...|.++... ....|+|.++..|.. ......+|.|+..+|
T Consensus 13 ~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~~~~------------~~~~~~~F~i~~~~r 80 (119)
T 2dhk_A 13 YLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAVFDCK------------ADAEEGIFEIKTPSR 80 (119)
T ss_dssp EEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCCSCSEEEEGGGCEEEEC------------TTGGGCEEEEECSSC
T ss_pred EEEecCCCCCCCCceeEEEEEECCccEEEEECCCCCcccccEEECCCCEEEec------------CCCCCCEEEEEeCCc
Confidence 3556553 122378999999886689888643 456799988877652 112346999999999
Q ss_pred eeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 100 SLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 100 sLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
++-|.|++++|++.|+..|+..+....
T Consensus 81 ~~~l~a~s~~e~~~Wi~al~~~~~~~~ 107 (119)
T 2dhk_A 81 VITLKAATKQAMLYWLQQLQMKRWEFH 107 (119)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999886544
No 33
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.47 E-value=0.00064 Score=65.93 Aligned_cols=95 Identities=22% Similarity=0.222 Sum_probs=65.6
Q ss_pred EEEEecC-CCceeEeEEEeCCCCeEEEecCCc----cceEEcc-ceeecccCCCChhhhcCCCCCCCCCeEEEEEcC-ce
Q 001361 28 LLKYGRR-GKPKFCPFRLANDESILIWISGKE----EKHLKLS-HVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND-RS 100 (1092)
Q Consensus 28 l~K~~~~-~kp~~r~f~L~~d~~~l~W~~~k~----~~~i~l~-~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rs 100 (1092)
|.|-+.. ..=+.|+|.|..+ ..|.|+.+.. ...|.+. ++.+|+.|..+..... ........||.|+..+ |+
T Consensus 14 L~K~g~~~k~WkkRwFVL~~~-~~L~Yyk~~~~~~~~g~i~l~~~~~~i~~~~~~~~v~~-~~~~~~~~~F~I~~~~~r~ 91 (130)
T 2d9v_A 14 LWRQSSILRRWKRNWFALWLD-GTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQP-PEGRSRDGLLTVNLREGSR 91 (130)
T ss_dssp EEEECSSSCCEEEEEEEEETT-TEEEEESSSSTTSEEEEEECTTTEEEEEEGGGCSSCCC-CSSCCTTTEEEEEETTSCE
T ss_pred EEeecCccCCceeeEEEEccC-CEEEEEeCCCCCCcCceEecccceeEEeccccccccCC-CCCCCcCcEEEEEeCCCCE
Confidence 4555432 2347889999755 6888887542 3356665 5667777765432211 1122345799999955 99
Q ss_pred eEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 101 LDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 101 LDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
+-|.|++++|++.|+..|+..+..
T Consensus 92 ~~l~A~s~~e~~~Wi~al~~a~~~ 115 (130)
T 2d9v_A 92 LHLCAETRDDAIAWKTALMEANST 115 (130)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEEEcCCHHHHHHHHHHHHHHHcC
Confidence 999999999999999999988853
No 34
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=0.00054 Score=65.31 Aligned_cols=92 Identities=20% Similarity=0.326 Sum_probs=66.9
Q ss_pred hcCCeEEEEec-CCCceeEeEEEeCCCCeEEEecCC------ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEE
Q 001361 23 KKGAHLLKYGR-RGKPKFCPFRLANDESILIWISGK------EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLI 95 (1092)
Q Consensus 23 ~~Gt~l~K~~~-~~kp~~r~f~L~~d~~~l~W~~~k------~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii 95 (1092)
++|- |.|-+. ...-+.|+|.|..+...|.|+... ....|+|..+. |.+ ......+|.|+
T Consensus 10 ~~G~-L~K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~~~g~I~L~~~~-v~~------------~~~~~~~F~i~ 75 (120)
T 2d9x_A 10 VYGY-LMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAV-ISP------------SDEDSHTFTVN 75 (120)
T ss_dssp CEEE-EEEEEETTTEEEEEEEEECTTTCEEEEESSGGGSSSCCSEEEECTTCC-EEC------------CSSSSSCEEEC
T ss_pred EEEE-EEecCCCCCCceEEEEEEECCCCEEEEEecCcccCCCccceEEcceEE-EEe------------cCCCCCEEEEE
Confidence 3444 455543 344588999999755889888633 24568888764 322 11235899999
Q ss_pred EcC-ceeEEEeCCHHHHHHHHHHHHHHHHccccc
Q 001361 96 YND-RSLDLICKDKDEAEVWFTGLKALISRSHYR 128 (1092)
Q Consensus 96 y~~-rsLDLia~~~~e~~~Wv~gL~~Li~~~~~~ 128 (1092)
..+ |++.|.|++++|++.|+..|+..+...+..
T Consensus 76 ~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~ 109 (120)
T 2d9x_A 76 AASGEQYKLRATDAKERQHWVSRLQICTQHHTEA 109 (120)
T ss_dssp CSSSCCEEECCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHHHHHHhhhh
Confidence 986 999999999999999999999998776543
No 35
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.30 E-value=0.0012 Score=62.14 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=64.9
Q ss_pred hcCCeEEEEec--CCCceeEeEEEeCCCCeEEEecC----CccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEE
Q 001361 23 KKGAHLLKYGR--RGKPKFCPFRLANDESILIWISG----KEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIY 96 (1092)
Q Consensus 23 ~~Gt~l~K~~~--~~kp~~r~f~L~~d~~~l~W~~~----k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy 96 (1092)
+.|- |.|-+. .+.-+.|+|.|.. ..|.|+.+ +....|+|..+..|..-. ..||.|+.
T Consensus 10 ~~G~-L~K~~~~~~~~WkkR~fvL~~--~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~--------------~~~F~i~~ 72 (115)
T 2cod_A 10 KSGW-LDKLSPQGKRMFQKRWVKFDG--LSISYYNNEKEMYSKGIIPLSAISTVRVQG--------------DNKFEVVT 72 (115)
T ss_dssp EEEE-EEECCSSSSSCCEEEEEEECS--SEEEEEESSCCSSCCCEEETTTEEEEEEET--------------TTEEEEEE
T ss_pred EEEE-EEEcCCCCCCCCceEEEEEEC--CEEEEEcCCCCcccCCEEECCcceEEEeCC--------------CCEEEEEe
Confidence 4453 455544 2334788999985 47877763 345679999888776421 57999998
Q ss_pred cCceeEEEeCCHHHHHHHHHHHHHHHHcc
Q 001361 97 NDRSLDLICKDKDEAEVWFTGLKALISRS 125 (1092)
Q Consensus 97 ~~rsLDLia~~~~e~~~Wv~gL~~Li~~~ 125 (1092)
.+|++-|.|++++|++.|+..|+..+...
T Consensus 73 ~~r~~~l~a~s~~e~~~Wi~~l~~~~~~~ 101 (115)
T 2cod_A 73 TQRTFVFRVEKEEERNDWISILLNALKSQ 101 (115)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence 88999999999999999999999998543
No 36
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=97.28 E-value=0.0016 Score=62.85 Aligned_cols=86 Identities=17% Similarity=0.302 Sum_probs=58.2
Q ss_pred ceeEeEEEeCCCCeEEEecCC-------ccceEEccceeecccCCCChhhhc----------CCCCCCCCCeEEEEEcC-
Q 001361 37 PKFCPFRLANDESILIWISGK-------EEKHLKLSHVSRIIPGQRTPIFQR----------YPRPEKEYQSFSLIYND- 98 (1092)
Q Consensus 37 p~~r~f~L~~d~~~l~W~~~k-------~~~~i~l~~I~eVr~G~~t~~f~~----------~~~~~~~~~~FSiiy~~- 98 (1092)
=+.|+|.|..+ ..|.++... ..+.|+|..+....++..-+ ... ....+....||.|+..+
T Consensus 22 WkkRwFvL~~~-~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~-l~~~~~~~~~~~~~~~~~~~~~~F~I~t~~~ 99 (128)
T 2rlo_A 22 WKKKYVTLSSN-GFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPP-RAISAFGPSASGSAGQAEEENFEFLIVSSTG 99 (128)
T ss_dssp EEEEEEEEETT-TEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCC-CSSCCCSCCSCCCCSSCCCCCCCEEEECTTS
T ss_pred ccEEEEEEeCC-CEEEEecchhhhccccCCCeeeeeeeEEecCCCccc-cccccccccccccccccccCCceEEEEcCCC
Confidence 37899999977 678887642 13457776554333322110 000 00012456799999987
Q ss_pred ceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 99 RSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 99 rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
|++.|.|+|++|++.|+..|+..|..
T Consensus 100 r~~~l~A~s~~e~~~Wi~ai~~~i~~ 125 (128)
T 2rlo_A 100 QTWHFEAASFEERDAWVQAIESQILA 125 (128)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988864
No 37
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.24 E-value=0.00085 Score=62.95 Aligned_cols=94 Identities=16% Similarity=0.243 Sum_probs=66.6
Q ss_pred hcCCeEEEEec-CCCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc
Q 001361 23 KKGAHLLKYGR-RGKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN 97 (1092)
Q Consensus 23 ~~Gt~l~K~~~-~~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~ 97 (1092)
++|- |.|-+. ...-+.|+|.|..+ .|.|+.+. ....|+|..+..|..-.. ......||.|+..
T Consensus 10 ~~G~-L~K~~~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~---------~~~~~~~F~i~~~ 77 (115)
T 2dn6_A 10 KQGY-MMKKGHRRKNWTERWFVLKPN--IISYYVSEDLKDKKGDILLDENCCVESLPD---------KDGKKCLFLVKCF 77 (115)
T ss_dssp EEEE-EEEECTTSSCEEEEEEEECSS--CEEEESSTTCSSEEEEECCCTTCEEEEECC---------CTTCCSEEEEECS
T ss_pred EEEE-EEecCCCCCCcEEeEEEEECC--EEEEeCCCCCcccCcEEEecCcEEEEECCC---------CCCCeeEEEEEeC
Confidence 3444 445443 33347889999865 67777642 345688887665544211 1233579999998
Q ss_pred CceeEEEeCCHHHHHHHHHHHHHHHHccccc
Q 001361 98 DRSLDLICKDKDEAEVWFTGLKALISRSHYR 128 (1092)
Q Consensus 98 ~rsLDLia~~~~e~~~Wv~gL~~Li~~~~~~ 128 (1092)
++++.|.|++++|++.|+..|+..+...+..
T Consensus 78 ~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~~~ 108 (115)
T 2dn6_A 78 DKTFEISASDKKKKQEWIQAIHSTIHLLKLG 108 (115)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999865543
No 38
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=97.21 E-value=0.001 Score=63.45 Aligned_cols=96 Identities=15% Similarity=0.248 Sum_probs=68.1
Q ss_pred HhcCCeEEEEecC-CCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEE
Q 001361 22 LKKGAHLLKYGRR-GKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIY 96 (1092)
Q Consensus 22 L~~Gt~l~K~~~~-~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy 96 (1092)
++.|- |.|-+.. ..-+.|+|.|..+ .|.|+.+. ....|+|.++..|....... + .....||.|+.
T Consensus 15 ~~~G~-L~K~g~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~l~~~~~v~~~~~~~-~------~~~~~~F~i~~ 84 (125)
T 1eaz_A 15 IKAGY-CVKQGAVMKNWKRRYFQLDEN--TIGYFKSELEKEPLRVIPLKEVHKVQECKQSD-I------MMRDNLFEIVT 84 (125)
T ss_dssp SEEEE-EEEECTTTCCEEEEEEEECSS--EEEEESSTTCSSCSEEEEGGGCCEEEECTTHH-H------HTCSSEEEEEC
T ss_pred cEEEE-EEEeCCCCCCcceEEEEEeCC--EEEEEcCCCCCcceeEEEcccceEEeeccccc-c------CCcCCEEEEEe
Confidence 34554 4454432 3347889999764 78887532 45679999887776532211 1 12357999999
Q ss_pred cCceeEEEeCCHHHHHHHHHHHHHHHHcccc
Q 001361 97 NDRSLDLICKDKDEAEVWFTGLKALISRSHY 127 (1092)
Q Consensus 97 ~~rsLDLia~~~~e~~~Wv~gL~~Li~~~~~ 127 (1092)
.+|++-|.|++++|++.|+..|+..+...+.
T Consensus 85 ~~r~~~l~a~s~~e~~~W~~al~~~i~~~~~ 115 (125)
T 1eaz_A 85 TSRTFYVQADSPEEMHSWIKAVSGAIVAQRG 115 (125)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHHHHHTC-
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHHHHhccC
Confidence 8899999999999999999999999976553
No 39
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.18 E-value=0.002 Score=60.28 Aligned_cols=88 Identities=17% Similarity=0.121 Sum_probs=64.7
Q ss_pred EEEEec-CCCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC-cee
Q 001361 28 LLKYGR-RGKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND-RSL 101 (1092)
Q Consensus 28 l~K~~~-~~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rsL 101 (1092)
|.|-+. .+.-+.|+|.|..+ .|.|+.++ ....|+|..+..|..... ......||.|+..+ +++
T Consensus 11 L~K~g~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~---------~~~~~~~F~i~~~~~r~~ 79 (113)
T 1pls_A 11 LVKKGSVFNTWKPMWVVLLED--GIEFYKKKSDNSPKGMIPLKGSTLTSPCQD---------FGKRMFVFKITTTKQQDH 79 (113)
T ss_dssp EEEESSSSSCCEEEEEEEETT--EEEEESSTTCSSCSEEEESSSCCEESSCCS---------SCCSSSEEEEEETTTEEE
T ss_pred EEEeCCCCCCceEEEEEEECC--EEEEEeCCCCCCcceEEEcCCCEEEEecCC---------CCCCccEEEEEcCCCCEE
Confidence 445543 23347889999876 68777643 456789988876642211 12345799999976 999
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 102 DLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 102 DLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
-|.|++++|++.|+..|+..+....
T Consensus 80 ~l~a~s~~e~~~Wi~ai~~~~~~~~ 104 (113)
T 1pls_A 80 FFQAAFLEERDAWVRDINKAIKCIE 104 (113)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999997654
No 40
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=97.13 E-value=0.0024 Score=65.03 Aligned_cols=87 Identities=18% Similarity=0.300 Sum_probs=61.5
Q ss_pred ceeEeEEEeCCCCeEEEecC--------CccceEEccceeecccCC--CChhhhcCC---C---CCCC--------CCeE
Q 001361 37 PKFCPFRLANDESILIWISG--------KEEKHLKLSHVSRIIPGQ--RTPIFQRYP---R---PEKE--------YQSF 92 (1092)
Q Consensus 37 p~~r~f~L~~d~~~l~W~~~--------k~~~~i~l~~I~eVr~G~--~t~~f~~~~---~---~~~~--------~~~F 92 (1092)
=|.|+|.|..+ .|.|+.+ +....|+|.++..|..-. ....|.+.. . ...+ ..+|
T Consensus 24 WKkRwFVL~~~--~L~Yyk~~~~~~~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~F 101 (169)
T 1btk_A 24 FKKCLFLLTVH--KLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPF 101 (169)
T ss_dssp EEEEEEEECSS--EEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHCCCEEE
T ss_pred CceEEEEEcCC--EEEEEecCCccCCCCceeeEEECcceEEEEeccCCCCcchhcccccccCcccccccccccccccccE
Confidence 38889999765 7888764 135579999876554331 222343331 0 0111 1699
Q ss_pred EEEEcCceeEEEeCCHHHHHHHHHHHHHHHHcc
Q 001361 93 SLIYNDRSLDLICKDKDEAEVWFTGLKALISRS 125 (1092)
Q Consensus 93 Siiy~~rsLDLia~~~~e~~~Wv~gL~~Li~~~ 125 (1092)
.|+..+|++-|.|++++|++.|+..|+..+...
T Consensus 102 ~I~t~~rt~yl~A~s~~E~~eWi~aI~~~i~~n 134 (169)
T 1btk_A 102 QVVYDEGPLYVFSPTEELRKRWIHQLKNVIRYN 134 (169)
T ss_dssp EEEETTCCEEEEESCHHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCceEEEEcCCHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999753
No 41
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=97.07 E-value=0.0021 Score=61.76 Aligned_cols=98 Identities=21% Similarity=0.252 Sum_probs=65.9
Q ss_pred hcCCeEEEEec-CCCceeEeEEEeCCCCeEEEecC----CccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc
Q 001361 23 KKGAHLLKYGR-RGKPKFCPFRLANDESILIWISG----KEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN 97 (1092)
Q Consensus 23 ~~Gt~l~K~~~-~~kp~~r~f~L~~d~~~l~W~~~----k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~ 97 (1092)
++|- |.|-+. ...-+.|+|.|..+...|.|+.. +....|+|..+.-+....... ........||.|+..
T Consensus 20 ~~G~-L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~-----~~~~~~~~~F~i~~~ 93 (129)
T 1x05_A 20 KQGC-LLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSN-----GRKSEEENLFEIITA 93 (129)
T ss_dssp EEEE-EEECCSSCCCCEEEEEEEEETTTEEEEECSSCCSSCSEEEECTTCEEEECCCCCC-----SSSCSSCSEEEEECT
T ss_pred EEEE-EEecCCCCCCCeeEEEEEeCCCCEEEEECCCCCCcceeEEEccCCEEEEccCCcc-----ccccCCCeEEEEEcC
Confidence 4443 445432 23347899999987668988853 245678888654322221110 001224689999997
Q ss_pred C-ceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 98 D-RSLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 98 ~-rsLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
+ +++.|.|++++|++.|+..|+..+...+
T Consensus 94 ~~~~~~l~a~s~~e~~~Wi~al~~~~~~~~ 123 (129)
T 1x05_A 94 DEVHYFLQAATPKERTEWIKAIQMASRTGK 123 (129)
T ss_dssp TCCCCEEECSSHHHHHHHHHHHHHHHTCCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHccC
Confidence 6 7899999999999999999999997544
No 42
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.02 E-value=0.0033 Score=59.00 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=63.4
Q ss_pred hcCCeEEEEec-CCCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEE-
Q 001361 23 KKGAHLLKYGR-RGKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIY- 96 (1092)
Q Consensus 23 ~~Gt~l~K~~~-~~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy- 96 (1092)
++|- |.|-+. ...-+.|+|.|..+ .|.|+.+. ....|+|..+.-+...... ......||.|+.
T Consensus 10 ~~G~-L~K~g~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~--------~~~~~~~f~i~~~ 78 (118)
T 1v89_A 10 KMGW-LKKQRSIVKNWQQRYFVLRAQ--QLYYYKDEEDTKPQGCMYLPGCTIKEIATNP--------EEAGKFVFEIIPA 78 (118)
T ss_dssp EEEE-EEEECSSSSCEEEEEEEEETT--EEEEESSSSCCSCSEEECSTTEEEEEECCCS--------SCCCCCEEEEEES
T ss_pred EEEE-EEecCCCCCCccEEEEEEECC--EEEEEeCCCCCCceEEEECCCCEEEEcCcCc--------ccCCcceEEEECC
Confidence 3443 444443 23347899999875 78887533 4557888766543322111 123357999999
Q ss_pred -------cCceeEEEeCCHHHHHHHHHHHHHHHHcc
Q 001361 97 -------NDRSLDLICKDKDEAEVWFTGLKALISRS 125 (1092)
Q Consensus 97 -------~~rsLDLia~~~~e~~~Wv~gL~~Li~~~ 125 (1092)
..+++-|.|++++|++.|+..|+..+...
T Consensus 79 ~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~ 114 (118)
T 1v89_A 79 SWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSG 114 (118)
T ss_dssp CCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCC
T ss_pred ccccccCCCcEEEEECCCHHHHHHHHHHHHHHHccC
Confidence 56999999999999999999999998753
No 43
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=96.98 E-value=0.0041 Score=60.13 Aligned_cols=91 Identities=18% Similarity=0.197 Sum_probs=63.8
Q ss_pred CeEEEEec--CCCceeEeEEEeCCCCeEEEe-cC--------CccceEEccceeecccCCCChhhhcCCCCCCCCCeEEE
Q 001361 26 AHLLKYGR--RGKPKFCPFRLANDESILIWI-SG--------KEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSL 94 (1092)
Q Consensus 26 t~l~K~~~--~~kp~~r~f~L~~d~~~l~W~-~~--------k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSi 94 (1092)
.+|.|-++ ...=+.|+|.|+.+...+.|| .. +....|+|..+..|....... ......||.|
T Consensus 19 G~L~K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~~~~~G~I~L~~~~~V~~~~~~~-------~~~~~~~F~i 91 (126)
T 1v5p_A 19 GFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQ-------KPKTPFCFVI 91 (126)
T ss_dssp CCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTT-------SCSCSSEEEE
T ss_pred EEEEEeCCCCCCCccceEEEEecCCCCEEEEECCCCCCCCCceeeEEEECCCccEEecCCccc-------CCCCCEEEEE
Confidence 34677752 334489999999765556555 32 134578998888877654211 1234579977
Q ss_pred EEcCceeEEEeCCHHHHHHHHHHHHHHHH
Q 001361 95 IYNDRSLDLICKDKDEAEVWFTGLKALIS 123 (1092)
Q Consensus 95 iy~~rsLDLia~~~~e~~~Wv~gL~~Li~ 123 (1092)
..+.|+.-|.|++++|++.||..|+..+.
T Consensus 92 ~t~~r~y~l~A~s~~e~~~Wi~al~~a~~ 120 (126)
T 1v5p_A 92 NALSQRYFLQANDQKDLKDWVEALNQASK 120 (126)
T ss_dssp ECSSCEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred ECCCEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 66779999999999999999999986653
No 44
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=96.89 E-value=0.004 Score=57.66 Aligned_cols=94 Identities=22% Similarity=0.257 Sum_probs=61.4
Q ss_pred hcCCeEEEEec-CCCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc
Q 001361 23 KKGAHLLKYGR-RGKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN 97 (1092)
Q Consensus 23 ~~Gt~l~K~~~-~~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~ 97 (1092)
+.|- |.|-+. ...-+.|+|.|..+...|.|+.+. ....|+|.++.-+....... ........||.|+..
T Consensus 9 ~~G~-L~K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~~~~-----~~~~~~~~~F~i~~~ 82 (109)
T 2i5f_A 9 KQGC-LLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSN-----GRKSEEENLFEIITA 82 (109)
T ss_dssp EEEE-EEEECTTTCCEEEEEEEEETTTTEEEEECTTSCSSCSEEEECTTCEEEEECC-------------CCSEEEEECT
T ss_pred EEEE-EEEcCCCCCCceEEEEEEeCCCcEEEEECCCCCCCccEEEECCCCEEEEccCCcc-----cccCCCceEEEEEeC
Confidence 3443 445443 233488999999876689888532 45678887743221111100 001224679999997
Q ss_pred C-ceeEEEeCCHHHHHHHHHHHHHHH
Q 001361 98 D-RSLDLICKDKDEAEVWFTGLKALI 122 (1092)
Q Consensus 98 ~-rsLDLia~~~~e~~~Wv~gL~~Li 122 (1092)
+ +++-|.|++++|++.|+..|+..+
T Consensus 83 ~~~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 83 DEVHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 6 779999999999999999998765
No 45
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=96.87 E-value=0.0053 Score=57.07 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=63.2
Q ss_pred hcCCeEEEEec-CCCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc
Q 001361 23 KKGAHLLKYGR-RGKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN 97 (1092)
Q Consensus 23 ~~Gt~l~K~~~-~~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~ 97 (1092)
+.|- |.|-+. ...-+.|+|.|.. ..|.++.++ ....|+|..+..+..... .....||.|+..
T Consensus 10 ~~G~-L~K~~~~~~~Wk~RwfvL~~--~~L~yyk~~~~~~~~~~i~L~~~~~~~~~~~----------~~~~~~F~i~~~ 76 (109)
T 1wgq_A 10 MSGY-LYRSKGSKKPWKHLWFVIKN--KVLYTYAASEDVAALESQPLLGFTVTLVKDE----------NSESKVFQLLHK 76 (109)
T ss_dssp CEEE-EEEESSTTSCCEEEEEEEET--TEEEEESCTTCSSCSEEEECSSEEEEECCCS----------SCSSSEEEEEET
T ss_pred EEEE-EEeCCCCCCCceeEEEEEeC--CEEEEECCCCcCccCceEECCCCEEEECCCC----------CCCCcEEEEEeC
Confidence 3444 444433 2334788999984 578887643 456788888776654321 123579999987
Q ss_pred C-ceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 98 D-RSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 98 ~-rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
+ +++-|.|++++|++.|+..|+..+..
T Consensus 77 ~~~~~~~~a~s~~e~~~Wi~al~~a~~~ 104 (109)
T 1wgq_A 77 GMVFYVFKADDAHSTQRWIDAFQEGTVS 104 (109)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHhcc
Confidence 6 78999999999999999999987754
No 46
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=96.81 E-value=0.0057 Score=55.27 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=54.4
Q ss_pred eEEEEec--CCCceeEeEEEeCCCCeEEEecCCc------cceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC
Q 001361 27 HLLKYGR--RGKPKFCPFRLANDESILIWISGKE------EKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND 98 (1092)
Q Consensus 27 ~l~K~~~--~~kp~~r~f~L~~d~~~l~W~~~k~------~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~ 98 (1092)
.|.|-+. ++| +.|+|.|.. ..|.|+.... ...|+|..+.-+. ......+|.|+.++
T Consensus 6 ~L~K~g~~~k~W-kkR~FvL~~--~~L~Yy~~~~~~~~~~~~~i~l~~~~~~~-------------~~~~~~~F~i~~~~ 69 (94)
T 2rsg_A 6 VLSKWTNYIHGW-QDRWVVLKN--NALSYYKSEDETEYGCRGSICLSKAVITP-------------HDFDECRFDISVND 69 (94)
T ss_dssp EEEEESSSTTCE-EEEEEEEET--TEEEEESSTTGGGTCCSEEEETTTCEEEE-------------CSSCSSEEEEEETT
T ss_pred EEEEeCCCCCCc-eEEEEEEEC--CEEEEEEecccccccceeeEecceeeeec-------------CcccceeEEEEeCC
Confidence 4666644 333 778999975 4788875432 2345655433221 12345799999999
Q ss_pred ceeEEEeCCHHHHHHHHHHHHH
Q 001361 99 RSLDLICKDKDEAEVWFTGLKA 120 (1092)
Q Consensus 99 rsLDLia~~~~e~~~Wv~gL~~ 120 (1092)
|++.|.|+|++|++.|+.+|+.
T Consensus 70 r~~~l~A~s~~e~~~Wi~aLq~ 91 (94)
T 2rsg_A 70 SVWYLRAQDPDHRQQWIDAIEQ 91 (94)
T ss_dssp EEEEEECCSSCCTHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHHh
Confidence 9999999999999999999864
No 47
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.78 E-value=0.0073 Score=59.63 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=60.0
Q ss_pred ceeEeEEEeCCC---CeEEEecCC-----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC-ceeEEEeCC
Q 001361 37 PKFCPFRLANDE---SILIWISGK-----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLICKD 107 (1092)
Q Consensus 37 p~~r~f~L~~d~---~~l~W~~~k-----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rsLDLia~~ 107 (1092)
-+.|+|.|..+. ..|.|+... ....|+|..+..|... ......||.|+..+ |++-|.|++
T Consensus 40 Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~~~g~I~L~~~~~~~~~-----------~~~~~~~F~i~~~~~r~~~l~A~s 108 (150)
T 1wg7_A 40 FKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQN-----------NKVRRFAFELKMQDKSSYLLAADS 108 (150)
T ss_dssp CEEEEEEEEECSSSCEEEEEESSSCCSSCCSEEECTTTCCEECCC-----------CSSCTTEEEEECSSSCEEEEECSS
T ss_pred eeEEEEEEecCCCCceEEEEECCCCCCCCcCcEEecccCEEEecC-----------CCCCceEEEEEeCCCcEEEEEeCC
Confidence 378899998752 278887643 3456888887666532 12345799999986 999999999
Q ss_pred HHHHHHHHHHHHHHHHcc
Q 001361 108 KDEAEVWFTGLKALISRS 125 (1092)
Q Consensus 108 ~~e~~~Wv~gL~~Li~~~ 125 (1092)
++|++.|+..|+.++...
T Consensus 109 ~~e~~~Wi~al~~ai~~~ 126 (150)
T 1wg7_A 109 EVEMEEWITILNKILQLN 126 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999998754
No 48
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=96.75 E-value=0.0042 Score=57.14 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=58.0
Q ss_pred CceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC-ceeEEEeCCHHH
Q 001361 36 KPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDE 110 (1092)
Q Consensus 36 kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rsLDLia~~~~e 110 (1092)
.-+.|+|.|.. ..|.|+.+. ....|+|.++.-+..-.. ........||.|+..+ +++.|.|++++|
T Consensus 22 ~Wk~R~fvL~~--~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~-------~~~~~~~~~F~i~~~~~r~~~l~a~s~~e 92 (108)
T 1u5d_A 22 EWQKRWCVVSR--GLFYYYANEKSKQPKGTFLIKGYSVRMAPHL-------RRDSKKESCFELTSQDRRTYEFTATSPAE 92 (108)
T ss_dssp EEEEEEEEEET--TEEEEESSTTCSSCSEEEECTTCEEEECGGG-------CSSGGGGGEEEEECSSSCCEEEECSSHHH
T ss_pred CceeeEEEEeC--CEEEEecCCCCCCCCEEEEecceEEEeCCcc-------ccccCCcceEEEEcCCCcEEEEECCCHHH
Confidence 34789999985 478887632 456788887763321100 0112335799999987 999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 001361 111 AEVWFTGLKALISR 124 (1092)
Q Consensus 111 ~~~Wv~gL~~Li~~ 124 (1092)
++.|+..|+..+..
T Consensus 93 ~~~Wi~ai~~~i~~ 106 (108)
T 1u5d_A 93 ARDWVDQISFLLKD 106 (108)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998864
No 49
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=96.66 E-value=0.0078 Score=57.22 Aligned_cols=89 Identities=25% Similarity=0.296 Sum_probs=60.2
Q ss_pred hcCCeEEEEec-CCCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc
Q 001361 23 KKGAHLLKYGR-RGKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN 97 (1092)
Q Consensus 23 ~~Gt~l~K~~~-~~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~ 97 (1092)
++|- |.|-+. ...-+.|+|.|..+ .|.|+.+. ....|+|.++. |+.... .....||.|+..
T Consensus 7 ~~G~-L~K~g~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~-v~~~~~----------~~~~~~f~i~~~ 72 (127)
T 1fgy_A 7 REGW-LLKLGGRVKTWKRRWFILTDN--CLYYFEYTTDKEPRGIIPLENLS-IREVLD----------PRKPNCFELYNP 72 (127)
T ss_dssp EEEE-EEEECSSSCCEEEEEEEEETT--EEEEESSTTCSSCSEEEECTTCE-EEEECC----------SSCSSEEEEECS
T ss_pred eEeE-EEEECCCCCCeEEEEEEEECC--EEEEeCCCCCCCcceEEECCceE-EEEccC----------CCCCceEEEecC
Confidence 3444 445443 23347899999864 78887632 44578998764 222111 133568888753
Q ss_pred ----------------------CceeEEEeCCHHHHHHHHHHHHHHHHcc
Q 001361 98 ----------------------DRSLDLICKDKDEAEVWFTGLKALISRS 125 (1092)
Q Consensus 98 ----------------------~rsLDLia~~~~e~~~Wv~gL~~Li~~~ 125 (1092)
.|++.|.|++++|++.|+..|+..+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~ 122 (127)
T 1fgy_A 73 SHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD 122 (127)
T ss_dssp SSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhccC
Confidence 2789999999999999999999998753
No 50
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.65 E-value=0.0036 Score=60.03 Aligned_cols=98 Identities=23% Similarity=0.281 Sum_probs=64.2
Q ss_pred HhcCCeEEEEec-CCCceeEeEEEeCCCCeEEEecCC-----ccceEEccc--eeecccCCCChhhhcCCCCCCCCCeEE
Q 001361 22 LKKGAHLLKYGR-RGKPKFCPFRLANDESILIWISGK-----EEKHLKLSH--VSRIIPGQRTPIFQRYPRPEKEYQSFS 93 (1092)
Q Consensus 22 L~~Gt~l~K~~~-~~kp~~r~f~L~~d~~~l~W~~~k-----~~~~i~l~~--I~eVr~G~~t~~f~~~~~~~~~~~~FS 93 (1092)
+++|- |.|-+. ...-+.|+|.|..|...|.|+... ....|+|.. |..|....... . ........||.
T Consensus 19 ~~~G~-L~K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~~~~~g~i~L~~~~v~~~~~~~~p~--~--~~~~~~~~~F~ 93 (129)
T 1x1g_A 19 VKQGY-LAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPT--G--VKGNVQGNLFK 93 (129)
T ss_dssp EEEEE-EEEECSSSSSEEEEEEEEEESSCEEEEECSSSCCSSCSCCEESTTCCCEECCSSSSCS--S--CSSCCCSSCEE
T ss_pred EEEEE-EEEECCCCCCeeeEEEEEeCCCCeEEEeCCCCcCCccceEEECcCCEEEEeCCCCCcc--c--ccCCCCCceEE
Confidence 34554 444443 333488999999876788888652 345688875 33332211000 0 00011457999
Q ss_pred EEEcC-ceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 94 LIYND-RSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 94 iiy~~-rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
|+..+ +++-|.|++++|++.|+..|+..+..
T Consensus 94 I~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~ 125 (129)
T 1x1g_A 94 VITKDDTHYYIQASSKAERAEWIEAIKKLTSG 125 (129)
T ss_dssp ECCTTCCCEEECCSSHHHHHHHHHHHHHHSSS
T ss_pred EEcCCCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 99987 78999999999999999999988754
No 51
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.54 E-value=0.014 Score=54.56 Aligned_cols=89 Identities=16% Similarity=0.176 Sum_probs=60.4
Q ss_pred hcCCeEEEEe--cCCCceeEeEEEeCCCCeEEEecCC----ccceEEcccee--ecccCCCChhhhcCCCCCCCCCeEEE
Q 001361 23 KKGAHLLKYG--RRGKPKFCPFRLANDESILIWISGK----EEKHLKLSHVS--RIIPGQRTPIFQRYPRPEKEYQSFSL 94 (1092)
Q Consensus 23 ~~Gt~l~K~~--~~~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~--eVr~G~~t~~f~~~~~~~~~~~~FSi 94 (1092)
+.|- |.|-+ ....-+.|+|.|.. ..|.|+.+. ....|+|.++. .+... .......||.|
T Consensus 13 ~~G~-L~K~~~~~~~~Wk~R~fvL~~--~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~----------~~~~~~~~F~i 79 (117)
T 2d9y_A 13 KAGW-LFKQASSGVKQWNKRWFVLVD--RCLFYYKDEKEESILGSIPLLSFRVAAVQPS----------DNISRKHTFKA 79 (117)
T ss_dssp EEEE-EEEECTTSSSCEEEEEEEEET--TEEEEESSTTCCSCCEEEECSSCEEEECCTT----------TTCCCSSEEEE
T ss_pred EEEE-EEEeCCCCCCCceEEEEEECC--CEEEEECCCCCCCcCCEEEeCCeEEEEcCcc----------ccCCCccEEEE
Confidence 4454 44554 22334788999975 578887532 45568887754 22111 11233579999
Q ss_pred EEcC-ceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 95 IYND-RSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 95 iy~~-rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
+..+ +++-|.|++++|++.|+..|+..+..
T Consensus 80 ~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~ 110 (117)
T 2d9y_A 80 EHAGVRTYFFSAESPEEQEAWIQAMGEAARV 110 (117)
T ss_dssp ECSSSCEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred EcCCCcEEEEEcCCHHHHHHHHHHHHHHHhh
Confidence 8765 99999999999999999999887743
No 52
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=96.52 E-value=0.0072 Score=56.37 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=57.6
Q ss_pred EEEEec-CCCceeEeEEEeCCCCeEEEecCCc----cceEEccce-eecccCCCChhhhcCCCCCCCCCeEEEEEc-Cce
Q 001361 28 LLKYGR-RGKPKFCPFRLANDESILIWISGKE----EKHLKLSHV-SRIIPGQRTPIFQRYPRPEKEYQSFSLIYN-DRS 100 (1092)
Q Consensus 28 l~K~~~-~~kp~~r~f~L~~d~~~l~W~~~k~----~~~i~l~~I-~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~-~rs 100 (1092)
|.|-+. ...-+.|+|.|..+ ..|.++.+.. ...|+|... ..|+.+....... .........||.|+.. .|+
T Consensus 11 L~K~g~~~k~WkkR~fvL~~~-~~L~yyk~~~~~~~~g~i~l~~~~i~l~~~~~v~~v~-~~~~~~~~~~F~i~~~~~r~ 88 (112)
T 3aj4_A 11 LLRQSTILKRWKKNWFDLWSD-GHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQ-PPDGKSKDCMLQIVCRDGKT 88 (112)
T ss_dssp EEEECSSSCCEEEEEEEECTT-SEEEEESSTTCCSEEEEEEHHHHEEEEEEGGGCCSCC-CSTTCCGGGEEEEEETTSCE
T ss_pred EEeeCCCCCCeeceEEEEeeC-CEEEEEcCCCCCCCCccccccccceeecccccccccC-CCCCCCcCcEEEEEecCCcE
Confidence 445543 23347899999655 6788876432 334666432 2333322211000 0011112469999986 599
Q ss_pred eEEEeCCHHHHHHHHHHHHHHHH
Q 001361 101 LDLICKDKDEAEVWFTGLKALIS 123 (1092)
Q Consensus 101 LDLia~~~~e~~~Wv~gL~~Li~ 123 (1092)
+-|.|+|++|++.|+..|+..+.
T Consensus 89 ~~l~a~s~~e~~~Wi~al~~a~~ 111 (112)
T 3aj4_A 89 ISLCAESTDDCLAWKFTLQDSRT 111 (112)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999987653
No 53
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=96.47 E-value=0.012 Score=57.94 Aligned_cols=81 Identities=12% Similarity=0.187 Sum_probs=56.8
Q ss_pred ceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC-ceeEEEeCCHHHH
Q 001361 37 PKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDEA 111 (1092)
Q Consensus 37 p~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rsLDLia~~~~e~ 111 (1092)
-+.|+|.|.. ..|.|+.+. ....|+|..+.-+... .. ........||.|+..+ |++-|.|++.+++
T Consensus 37 WkkR~fvL~~--~~L~yyk~~~~~~~~g~i~L~~~~v~~~~-~~------~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~ 107 (148)
T 1u5f_A 37 WQKRWCALSK--TVFYYYGSDKDKQQKGEFAIDGYDVRMNN-TL------RKDGKKDCCFEICAPDKRIYQFTAASPKDA 107 (148)
T ss_dssp EEEEEEEEET--TEEEEESSTTCSSCSEEEECTTCEEEECT-TS------CSSTTGGGEEEEECTTSCEEEEECSSHHHH
T ss_pred ceeEEEEEEC--CEEEEEcCCCCcccceEEEcCCcEEEECC-Cc------ccCCCCccEEEEECCCCcEEEEECCCHHHH
Confidence 4788999984 478887643 4566888877533211 00 0112224799999977 9999999999999
Q ss_pred HHHHHHHHHHHHccc
Q 001361 112 EVWFTGLKALISRSH 126 (1092)
Q Consensus 112 ~~Wv~gL~~Li~~~~ 126 (1092)
+.|+..|+..+...+
T Consensus 108 ~~Wi~al~~~i~~~~ 122 (148)
T 1u5f_A 108 EEWVQQLKFILQDLG 122 (148)
T ss_dssp HHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987544
No 54
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=96.43 E-value=0.013 Score=53.79 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=58.5
Q ss_pred eEEEEecC-CCceeEeEEEeCCCCeEEEecCC------ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc-C
Q 001361 27 HLLKYGRR-GKPKFCPFRLANDESILIWISGK------EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN-D 98 (1092)
Q Consensus 27 ~l~K~~~~-~kp~~r~f~L~~d~~~l~W~~~k------~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~-~ 98 (1092)
.|.|-+.. ..-+.|+|.|.. ..|.|+.+. ....|+|..+ .|..- ..+..+|.|+.. +
T Consensus 4 ~L~K~g~~~k~Wk~R~fvL~~--~~L~Yy~~~~~~~~~~~g~i~L~~~-~v~~~------------~~~~~~F~i~~~~~ 68 (103)
T 3rcp_A 4 VLYKWTNYLTGWQPRWFVLDN--GILSYYDSQDDVCKGSKGSIKMAVC-EIKVH------------SADNTRMELIIPGE 68 (103)
T ss_dssp EEEEECCTTTCEEEEEEEEET--TEEEEESSCC---CCCSCEEEGGGC-EEECC------------TTCSSEEEEEETTT
T ss_pred EEEEccCCCCCeeceEEEEEC--CEEEEEecCCcccCCcccEEEeeee-EEEEc------------CCCCceEEEEeCCC
Confidence 45666543 234788999984 688888643 3456777533 22211 113679999996 6
Q ss_pred ceeEEEeCCHHHHHHHHHHHHHHHHcc
Q 001361 99 RSLDLICKDKDEAEVWFTGLKALISRS 125 (1092)
Q Consensus 99 rsLDLia~~~~e~~~Wv~gL~~Li~~~ 125 (1092)
+++.|.|+|++|++.|+..|+..+...
T Consensus 69 r~~~l~a~s~~e~~~Wi~al~~a~~~~ 95 (103)
T 3rcp_A 69 QHFYMKAVNAAERQRWLVALGSSKASL 95 (103)
T ss_dssp EEEEEECSSHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999988766543
No 55
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=96.36 E-value=0.0078 Score=57.40 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=62.8
Q ss_pred hcCCeEEEEec-CCCceeEeEEEeCCCCeEEEecCCc----cceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEE-
Q 001361 23 KKGAHLLKYGR-RGKPKFCPFRLANDESILIWISGKE----EKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIY- 96 (1092)
Q Consensus 23 ~~Gt~l~K~~~-~~kp~~r~f~L~~d~~~l~W~~~k~----~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy- 96 (1092)
++|- |.|-+. ...-+.|+|.|..+ ..|.|+..+. ...|+|..+.-+.. .+.. .......||.|+.
T Consensus 10 ~~G~-L~K~g~~~k~WkkRwfvL~~~-~~L~yy~~~~~~~~~g~i~L~~~~~~~~----~~~~---~~~~~~~~F~I~~~ 80 (125)
T 1unq_A 10 KEGW-LHKRGEYIKTWRPRYFLLKND-GTFIGYKERPQDVDQREAPLNNFSVAQC----QLMK---TERPRPNTFIIRCL 80 (125)
T ss_dssp EEEE-EEEECSSSCCEEEEEEEEETT-SEEEEESSCCCSHHHHTSCSEEEECTTC----EEEE---ECSSSTTEEEEEEE
T ss_pred EEee-EEeccCCccCccCcEEEEecC-CEEEEEeCCCCCCCCceeEccceeEEee----eecc---cccCCCCEEEEEec
Confidence 3443 455543 23348899999876 5787776432 23467765542211 0000 0123457999997
Q ss_pred --c-CceeEEEeCCHHHHHHHHHHHHHHHHcccc
Q 001361 97 --N-DRSLDLICKDKDEAEVWFTGLKALISRSHY 127 (1092)
Q Consensus 97 --~-~rsLDLia~~~~e~~~Wv~gL~~Li~~~~~ 127 (1092)
. .+++-|.|++.+|++.|+..|+..+...+.
T Consensus 81 ~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~ 114 (125)
T 1unq_A 81 QWTTVIERTFHVETPEEREEWTTAIQTVADGLKK 114 (125)
T ss_dssp ETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceeEEEEeCCHHHHHHHHHHHHHHHhhccc
Confidence 2 389999999999999999999999987654
No 56
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.33 E-value=0.015 Score=57.88 Aligned_cols=92 Identities=15% Similarity=0.205 Sum_probs=63.1
Q ss_pred HHhcCCeEEEEecC-CCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEE
Q 001361 21 ALKKGAHLLKYGRR-GKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLI 95 (1092)
Q Consensus 21 ~L~~Gt~l~K~~~~-~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii 95 (1092)
.+++|- |.|-+.. ..=+.|+|.|..+ .|.|+.+. ....|+|.++..+..-. .. .....||.|+
T Consensus 18 v~keG~-L~Kkg~~~k~WkrRWFvLk~~--~L~Yyk~~~d~~~~g~I~L~~~~~~~~~~--------~~-~~~~~~F~I~ 85 (149)
T 1x1f_A 18 LYFEGF-LLIKRSGYREYEHYWTELRGT--TLFFYTDKKSIIYVDKLDIVDLTCLTEQN--------ST-EKNCAKFTLV 85 (149)
T ss_dssp EEEEEE-EEEECTTCCSCEEEEEEEETT--EEEEESCSSCSSCSEECCCSSCCEEEECC--------CT-TSCCCEEEEE
T ss_pred ccEEEE-EEEeCCCCCCceeEEEEEcCC--EEEEEeCCCccccCcEEECCCceEEeecc--------CC-CCcCcEEEEE
Confidence 445564 4455432 2337888999875 78888643 23457777655432110 00 1235799999
Q ss_pred EcCceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 96 YNDRSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 96 y~~rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
..+++.-|.|++.+|++.|+..|+.++..
T Consensus 86 t~~r~~~f~A~s~ee~~eWi~aI~~v~~~ 114 (149)
T 1x1f_A 86 LPKEEVQLKTENTESGEEWRGFILTVTEL 114 (149)
T ss_dssp CSSCCEEEECSSHHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999874
No 57
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=96.32 E-value=0.011 Score=63.18 Aligned_cols=74 Identities=23% Similarity=0.370 Sum_probs=59.4
Q ss_pred ceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCceeEEEeCCHHHHH
Q 001361 37 PKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAE 112 (1092)
Q Consensus 37 p~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~rsLDLia~~~~e~~ 112 (1092)
-+.|+|.|.. ..|.|+.+. ....|+|..+..|.... ....||.|+..+|++.|.|++++|++
T Consensus 79 WkkRwfvL~~--~~L~Yyk~~~~~~~~g~I~L~~~~~v~~~~------------~k~~~F~I~t~~r~~~l~A~s~~e~~ 144 (228)
T 3tfm_A 79 WKKRWFVLRQ--SKLMYFENDSEEKLKGTVEVRSAKEIIDNT------------NKENGIDIIMADRTFHLIAESPEDAS 144 (228)
T ss_dssp CEEEEEEECS--SEEEEESSTTCCSEEEEEEGGGCSEEEEET------------TTTSEEEEECSSCEEEEECSSHHHHH
T ss_pred ceEEEEEEeC--CEEEEEeCCCCcceeEEEEcCCCEEeccCC------------CCCcEEEEEcCCcEEEEEcCCHHHHH
Confidence 3788999985 578888643 34578998887765432 23579999999999999999999999
Q ss_pred HHHHHHHHHHHc
Q 001361 113 VWFTGLKALISR 124 (1092)
Q Consensus 113 ~Wv~gL~~Li~~ 124 (1092)
.|+.+|+..+..
T Consensus 145 ~Wv~aL~~~i~~ 156 (228)
T 3tfm_A 145 QWFSVLSQVHSS 156 (228)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 999999999974
No 58
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=96.29 E-value=0.013 Score=63.96 Aligned_cols=82 Identities=16% Similarity=0.249 Sum_probs=62.0
Q ss_pred CCCceeEeEEEeCC-----CCeEEEecC---------CccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCc
Q 001361 34 RGKPKFCPFRLAND-----ESILIWISG---------KEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDR 99 (1092)
Q Consensus 34 ~~kp~~r~f~L~~d-----~~~l~W~~~---------k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~r 99 (1092)
++| |.|+|.|..+ ...|.|+.+ +....|+|.++..|..... .....||.|+..+|
T Consensus 20 K~W-kkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~~~~----------~~~~~~F~I~t~~r 88 (264)
T 1qqg_A 20 KSM-HKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRAD----------SKNKHLVALYTRDE 88 (264)
T ss_dssp TTC-CEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECC----------SSCSSEEEEEESSC
T ss_pred CCC-EeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEeccC----------CCCCcEEEEEECCE
Confidence 444 6788999887 458988863 2456799998887754321 23457999999999
Q ss_pred eeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 100 SLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 100 sLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
++-|.|++++|++.|+..|+.++...+
T Consensus 89 ty~l~A~se~e~~~Wi~aL~~~~~~~k 115 (264)
T 1qqg_A 89 HFAIAADSEAEQDSWYQALLQLHNRAK 115 (264)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHC----
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999987654
No 59
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.21 E-value=0.036 Score=52.28 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=59.3
Q ss_pred hcCCeEEEEe--cCCCceeEeEEEeCCCCeEEEecC----CccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEE
Q 001361 23 KKGAHLLKYG--RRGKPKFCPFRLANDESILIWISG----KEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIY 96 (1092)
Q Consensus 23 ~~Gt~l~K~~--~~~kp~~r~f~L~~d~~~l~W~~~----k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy 96 (1092)
+.|- |.|-+ ....-+.|+|.|.. ..|.|+.+ +....|+|.++. |..-.. ........||.|+.
T Consensus 24 ~~G~-L~K~~~~~~~~Wk~R~fvL~~--~~L~yy~~~~~~~~~g~i~L~~~~-v~~~~~-------~~~~~~~~~F~i~~ 92 (122)
T 2yry_A 24 KAGW-LFKQASSGVKQWNKRWFVLVD--RCLFYYKDEKEESILGSIPLLSFR-VAAVQP-------SDNISRKHTFKAEH 92 (122)
T ss_dssp EEEE-EEEECCSSSCCEEEEEEEEET--TEEEEESSTTCCSCCEEEESTTCC-CEECCT-------TCSCSSSSEEEEEC
T ss_pred EEEE-EEEECCCCCCCcEEEEEEEeC--CEEEEECCCCCCCcccEEEcCCCE-EEEcCc-------cccCCcccEEEEec
Confidence 4554 44543 22334788999975 58888853 245568887654 221100 01123357999987
Q ss_pred c-CceeEEEeCCHHHHHHHHHHHHHHH
Q 001361 97 N-DRSLDLICKDKDEAEVWFTGLKALI 122 (1092)
Q Consensus 97 ~-~rsLDLia~~~~e~~~Wv~gL~~Li 122 (1092)
. .+++-|.|++++|++.|+..|+..+
T Consensus 93 ~~~r~~~l~a~s~~e~~~Wi~al~~a~ 119 (122)
T 2yry_A 93 AGVRTYFFSAESPEEQEAWIQAMGEAA 119 (122)
T ss_dssp SSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 5 4999999999999999999998776
No 60
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=96.21 E-value=0.04 Score=51.98 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=55.7
Q ss_pred ceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC-ceeEEEeCCHHHH
Q 001361 37 PKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDEA 111 (1092)
Q Consensus 37 p~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rsLDLia~~~~e~ 111 (1092)
-+.|+|.|.. ..|.|+.+. ....|+|.++. |...... .......||.|+..+ +++-|.|++++|+
T Consensus 28 WkkR~fvL~~--~~L~yy~~~~~~~~~g~i~l~~~~-v~~~~~~-------~~~~~~~~f~i~~~~~r~~~l~a~s~~e~ 97 (123)
T 1upq_A 28 WKRRWFVLSG--HCLFYYKDSREESVLGSVLLPSYN-IRPDGPG-------APRGRRFTFTAEHPGMRTYVLAADTLEDL 97 (123)
T ss_dssp EEEEEEEEET--TEEEEESSTTCCSCCEEEEGGGCE-EEECCSS-------CTTSSSSEEEEECTTSCCEEEECSSHHHH
T ss_pred ceeEEEEEeC--CEEEEECCCCCcccceEEECCCCE-EEECCCC-------ccCCCcEEEEEECCCCeEEEEECCCHHHH
Confidence 4788999974 578887532 44567877654 3222111 112345799999876 9999999999999
Q ss_pred HHHHHHHHHHHHc
Q 001361 112 EVWFTGLKALISR 124 (1092)
Q Consensus 112 ~~Wv~gL~~Li~~ 124 (1092)
+.|+..|+..+..
T Consensus 98 ~~Wi~al~~a~~~ 110 (123)
T 1upq_A 98 RGWLRALGRASRA 110 (123)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998864
No 61
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.16 E-value=0.016 Score=53.77 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=57.4
Q ss_pred hcCCeEEEEecCCCceeEeEEEeCCCCeEEEecCCc---cceEEcccee-ecccCCCChhhhcCCCCCCCCCeEEEEEc-
Q 001361 23 KKGAHLLKYGRRGKPKFCPFRLANDESILIWISGKE---EKHLKLSHVS-RIIPGQRTPIFQRYPRPEKEYQSFSLIYN- 97 (1092)
Q Consensus 23 ~~Gt~l~K~~~~~kp~~r~f~L~~d~~~l~W~~~k~---~~~i~l~~I~-eVr~G~~t~~f~~~~~~~~~~~~FSiiy~- 97 (1092)
+.|-...+ ..++ =+.|+|.|..+ .|.++..+. ...+.|.-.. .|.+... .....||.|+..
T Consensus 10 ~~G~L~K~-~~k~-Wk~RwfvL~~~--~L~yyk~~~~~~~~~~~i~l~~~~v~~~~~----------~~~~~~F~i~~~~ 75 (107)
T 2cof_A 10 TSSYLNVL-VNSQ-WKSRWCSVRDN--HLHFYQDRNRSKVAQQPLSLVGCEVVPDPS----------PDHLYSFRILHKG 75 (107)
T ss_dssp TCCEEEEE-ETTE-EEEEEEEECSS--CEEEECSSTTCSEEEEEECTTTCEEECCCB----------TTBSCEEEEEETT
T ss_pred EeEEEEEe-cCCC-cceEEEEEECC--EEEEEeCCcccCCCeeEEeccceEEEECCC----------CCCCeEEEEEeCC
Confidence 55655444 4443 47888999866 677776442 2334443222 1333221 123579999997
Q ss_pred CceeEEEeCCHHHHHHHHHHHHHHHH
Q 001361 98 DRSLDLICKDKDEAEVWFTGLKALIS 123 (1092)
Q Consensus 98 ~rsLDLia~~~~e~~~Wv~gL~~Li~ 123 (1092)
.|++-|.|++++|++.|+..|+..+.
T Consensus 76 ~r~~~l~A~s~~e~~~Wi~al~~~~~ 101 (107)
T 2cof_A 76 EELAKLEAKSSEEMGHWLGLLLSESG 101 (107)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 59999999999999999999987654
No 62
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=96.14 E-value=0.018 Score=54.88 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=59.8
Q ss_pred HhcCCeEEEEec--CCCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEE
Q 001361 22 LKKGAHLLKYGR--RGKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLI 95 (1092)
Q Consensus 22 L~~Gt~l~K~~~--~~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii 95 (1092)
+++|-. .|-+. ...-+.|+|.|.. ..|.|+... ....|+|..+. |..-... .......||.|+
T Consensus 22 ~~~G~L-~K~~~~~~~~Wk~R~fvL~~--~~L~yy~~~~~~~~~g~i~L~~~~-v~~~~~~-------~~~~~~~~F~i~ 90 (128)
T 2dkp_A 22 VRRGWL-YKQDSTGMKLWKKRWFVLSD--LCLFYYRDEKEEGILGSILLPSFQ-IALLTSE-------DHINRKYAFKAA 90 (128)
T ss_dssp CEEEEE-EEECCSSSCCEEEEEEEEET--TEEEEESSTTCCSEEEEECGGGSE-EEECCGG-------GCCSSCSEEEEE
T ss_pred EEEEEE-EEeCCCCCCCceeEEEEEeC--CEEEEECCCCCcccceEEEcCceE-EEEcCCc-------ccCCCCeEEEEE
Confidence 355654 45433 2334888999974 588888643 34457776543 2111100 112335799999
Q ss_pred EcC-ceeEEEeCCHHHHHHHHHHHHHHHH
Q 001361 96 YND-RSLDLICKDKDEAEVWFTGLKALIS 123 (1092)
Q Consensus 96 y~~-rsLDLia~~~~e~~~Wv~gL~~Li~ 123 (1092)
..+ +++.|.|++++|++.|+..|+..+.
T Consensus 91 ~~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 91 HPNMRTYYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp CSSSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred cCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 976 9999999999999999999987654
No 63
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.07 E-value=0.018 Score=54.06 Aligned_cols=88 Identities=23% Similarity=0.305 Sum_probs=57.6
Q ss_pred hcCCeEEEEecC--CCceeEeEEEeCCCCeEEEecCCc---cceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc
Q 001361 23 KKGAHLLKYGRR--GKPKFCPFRLANDESILIWISGKE---EKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN 97 (1092)
Q Consensus 23 ~~Gt~l~K~~~~--~kp~~r~f~L~~d~~~l~W~~~k~---~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~ 97 (1092)
+.|- |.|-+.. ..-+.|+|.|.. ..|.++.+.. ...|.+.... |++ . .....||.|+..
T Consensus 12 ~~G~-L~K~~~~~~k~WkkR~fvL~~--~~L~yyk~~~~~~~~~i~l~~~~-v~~-----------~-~~~~~~F~I~~~ 75 (114)
T 2da0_A 12 KKGY-LLKKSDGIRKVWQRRKCSVKN--GILTISHATSNRQPAKLNLLTCQ-VKP-----------N-AEDKKSFDLISH 75 (114)
T ss_dssp EEEE-EEEECSSSCCCEEEEEEEEET--TEEEECCSSCCSCCEEEETTTSE-EEE-----------C-SSSSSCEEEEET
T ss_pred EEEE-EEEeCCCCCCCceeEEEEEeC--CEEEEEcCCCCCCCCEEEeeeeE-EEE-----------C-CCCCCEEEEEcC
Confidence 3444 4455431 234788999954 5788876532 2233332111 110 1 112359999998
Q ss_pred CceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 98 DRSLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 98 ~rsLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
+|++-|.|++++|++.|+..|+..+....
T Consensus 76 ~r~~~l~a~s~~e~~~Wi~al~~~~~~~~ 104 (114)
T 2da0_A 76 NRTYHFQAEDEQDYVAWISVLTNSKEEAL 104 (114)
T ss_dssp TEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999887654
No 64
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=96.04 E-value=0.02 Score=54.80 Aligned_cols=69 Identities=22% Similarity=0.452 Sum_probs=51.7
Q ss_pred ceeEeEEEeCCCCeEEEecCC----ccceEEccce--eecccCCCChhhhcCCCCCCCCCeEEEEEcC--------ceeE
Q 001361 37 PKFCPFRLANDESILIWISGK----EEKHLKLSHV--SRIIPGQRTPIFQRYPRPEKEYQSFSLIYND--------RSLD 102 (1092)
Q Consensus 37 p~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I--~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~--------rsLD 102 (1092)
-+.|.|.|..+ +|.|+... +...|+|..+ ++|-.|.. ....||.|++.+ +++.
T Consensus 30 wk~rWFVLt~~--~L~yyKd~~eke~~G~IpL~~~~vr~v~~~~~-----------~rk~~F~l~~~d~r~v~~~h~~y~ 96 (125)
T 1dyn_A 30 SKEYWFVLTAE--NLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFM-----------SSKHIFALFNTEQRNVYKDYRQLE 96 (125)
T ss_dssp SEEEEEEEESS--EEEEESSTTCSCEEEEEECTTEEEEECCSCSS-----------SSCEEEEEEETTSSCSSTTCSSEE
T ss_pred ceeeEEEEecc--ceeeecCCcccccceEEECCCceEeccCCCCC-----------CCceEEEEECCCCccccccceEEE
Confidence 58889999986 89999743 3445888754 45554421 124689998843 6999
Q ss_pred EEeCCHHHHHHHHHHH
Q 001361 103 LICKDKDEAEVWFTGL 118 (1092)
Q Consensus 103 Lia~~~~e~~~Wv~gL 118 (1092)
|.|.|.+|.+.|+..|
T Consensus 97 LsA~t~ee~~~Wi~s~ 112 (125)
T 1dyn_A 97 LACETQEEVDSWKASF 112 (125)
T ss_dssp EEESSHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHH
Confidence 9999999999999987
No 65
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=96.01 E-value=0.017 Score=55.12 Aligned_cols=83 Identities=13% Similarity=0.259 Sum_probs=59.6
Q ss_pred ceeEeEEEeCCCCeEEEecC-------CccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc------CceeEE
Q 001361 37 PKFCPFRLANDESILIWISG-------KEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN------DRSLDL 103 (1092)
Q Consensus 37 p~~r~f~L~~d~~~l~W~~~-------k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~------~rsLDL 103 (1092)
=+.|+|.|... +|.++.. +....|+|+.+..|+.=...++....... ..+.|.|+|. .++|-|
T Consensus 20 Wkkr~~vL~~~--kL~~y~~~~~~~~~~p~~~Idl~~~~~V~~V~~~d~i~~~~~~--~p~iF~I~~~~~~~~~~~~l~l 95 (117)
T 2rov_A 20 WVKKYVIVSSK--KILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRADAKE--IPRIFQILYANEGISSAKNLLL 95 (117)
T ss_dssp CCEEEEEEETT--EEEEESCHHHHHTTCCSEEECGGGEEEEEECCTTTCSSSCTTT--GGGEEEEEECSSSSTTCEEEEE
T ss_pred cEEEEEEEECC--EEEEEECCCCcccCCceEEEECcccEEEEEccccccccccccc--CCcEEEEEeCCCCCCCCcEEEE
Confidence 36788999865 6666652 23567898887776654444433332222 2478999995 289999
Q ss_pred EeCCHHHHHHHHHHHHHHHH
Q 001361 104 ICKDKDEAEVWFTGLKALIS 123 (1092)
Q Consensus 104 ia~~~~e~~~Wv~gL~~Li~ 123 (1092)
.|++.+|.+.||..|+..|.
T Consensus 96 ~A~s~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 96 LANSTEEQQKWVSRLVKKIP 115 (117)
T ss_dssp ECSSHHHHHHHHHHHHHHCT
T ss_pred EeCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998764
No 66
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=95.95 E-value=0.026 Score=54.03 Aligned_cols=90 Identities=13% Similarity=0.207 Sum_probs=60.5
Q ss_pred hcCCeEEEEec-CCCceeEeEEEeCCCCeEEEecCC-------------ccceEEccceeecccCCCChhhhcCCCCCCC
Q 001361 23 KKGAHLLKYGR-RGKPKFCPFRLANDESILIWISGK-------------EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKE 88 (1092)
Q Consensus 23 ~~Gt~l~K~~~-~~kp~~r~f~L~~d~~~l~W~~~k-------------~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~ 88 (1092)
++| +|.|-+. .+.-+.|+|.|..+ .|.|+... ....|+|.... |..... .....
T Consensus 14 k~G-~L~K~g~~~k~Wk~RwfVL~~~--~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~-v~~~~~--------~~~~k 81 (124)
T 2w2x_D 14 QQG-ELYMWDSIDQKWTRHFCAIADA--KLSFSDDIEQTMEEDNPLGSLCRGILDLNTYN-VVKAPQ--------GKNQK 81 (124)
T ss_dssp CEE-EEEEEETTTTEEEEEEEEEETT--EEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEE-EEECTT--------CBTTB
T ss_pred eeE-EEEEECCCCCCceEeEEEEECC--EEEEEcccccccccccccCCccccEEECCCCE-EEEccC--------CcCCC
Confidence 444 4555543 34458999999855 68887632 25678887665 222211 11122
Q ss_pred CCeEEEEEcC---ceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 89 YQSFSLIYND---RSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 89 ~~~FSiiy~~---rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
..+|.|.+.. +++.|.|++.+|++.|+..|+..+..
T Consensus 82 ~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~ 120 (124)
T 2w2x_D 82 SFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWK 120 (124)
T ss_dssp SEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC-
T ss_pred CEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHHh
Confidence 3599999853 78999999999999999999987754
No 67
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=95.81 E-value=0.046 Score=57.56 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=58.4
Q ss_pred ceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC-ceeEEEeCCHHHH
Q 001361 37 PKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDEA 111 (1092)
Q Consensus 37 p~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rsLDLia~~~~e~ 111 (1092)
-+.|+|.|.. ..|.|+... ....|+|..+..|..-.. ........||.|+..+ |++-|.|++.+++
T Consensus 126 WkkRwfVL~~--~~L~Yyk~~~~~~p~g~I~L~~~~~v~~~~~-------~~~~~k~~~F~I~t~~~r~~~l~A~s~~e~ 196 (211)
T 1u5e_A 126 WQKRWCALSK--TVFYYYGSDKDKQQKGEFAIDGYDVRMNNTL-------RKDGKKDCCFEICAPDKRIYQFTAASPKDA 196 (211)
T ss_dssp CEEEEEEEET--TEEEEESSTTCSSCSEEEECTTCEEEECGGG-------CSSTTGGGEEEEECSSSCEEEEECSSHHHH
T ss_pred cEeEEEEEEC--CEEEEEcCCCCccceEEEEeCCcEEEEcCCc-------cccCCCCCEEEEEcCCCCEEEEEcCCHHHH
Confidence 4788999975 478887643 356799988776642110 0111234799999976 9999999999999
Q ss_pred HHHHHHHHHHHHc
Q 001361 112 EVWFTGLKALISR 124 (1092)
Q Consensus 112 ~~Wv~gL~~Li~~ 124 (1092)
+.|+..|+..|..
T Consensus 197 ~~Wi~aL~~ai~~ 209 (211)
T 1u5e_A 197 EEWVQQLKFILQD 209 (211)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
No 68
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=95.32 E-value=0.066 Score=51.38 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=56.9
Q ss_pred CceeEeEEEeCCCCeEEEec-------CCccceEEcccee--ecccCCCChhhhcCCCCCCCCCeEEEEEc--C------
Q 001361 36 KPKFCPFRLANDESILIWIS-------GKEEKHLKLSHVS--RIIPGQRTPIFQRYPRPEKEYQSFSLIYN--D------ 98 (1092)
Q Consensus 36 kp~~r~f~L~~d~~~l~W~~-------~k~~~~i~l~~I~--eVr~G~~t~~f~~~~~~~~~~~~FSiiy~--~------ 98 (1092)
.-+.|+|.|..+ .|.++. .+....|+|..+. +|....+. ......||.|+.. .
T Consensus 22 ~WkrRwfvL~~~--~L~yyk~~~d~~~~~p~g~I~L~~~~~~~v~~~~~~--------~~~~~~~F~i~~~~p~~~~~~~ 91 (134)
T 2y7b_A 22 AWHRRWCVLSGN--CISYWTYPDDEKRKNPIGRINLANCTSRQIEPANRE--------FCARRNTFELITVRPQREDDRE 91 (134)
T ss_dssp EEEEEEEEEETT--EEEEESSHHHHTTSCCSEEEEGGGBCSSSCEECCTT--------TCCCTTEEEEEEEEECCTTCCC
T ss_pred CcEEEEEEEECC--EEEEECCCCcccccCceEEEEhhhCccccccccchh--------hccCCCEEEEEecCCCcccccc
Confidence 347889999875 777775 2345678888754 34433210 1123569999872 1
Q ss_pred ------------ceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 99 ------------RSLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 99 ------------rsLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
+++-|.|++++|++.|+..|+..+...+
T Consensus 92 ~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~~~ 131 (134)
T 2y7b_A 92 TLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVDIR 131 (134)
T ss_dssp CSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999999987543
No 69
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=95.22 E-value=0.076 Score=61.08 Aligned_cols=91 Identities=11% Similarity=0.236 Sum_probs=63.4
Q ss_pred eEEEEecCC--CceeEeEEEeCCCCeEEEecCC----ccceEEccceeec---ccCCCChhhhcCCCCCCCCCeEEEEEc
Q 001361 27 HLLKYGRRG--KPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRI---IPGQRTPIFQRYPRPEKEYQSFSLIYN 97 (1092)
Q Consensus 27 ~l~K~~~~~--kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eV---r~G~~t~~f~~~~~~~~~~~~FSiiy~ 97 (1092)
+|.|-+.+. .-+.|+|.|.. ..|.++.+. ....|+|.++..+ ..+..... ....-..||.|+..
T Consensus 274 ~L~K~g~~~~k~WKkRwFVL~~--~~L~YYk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~-----~~~~~~~~F~I~t~ 346 (386)
T 3lju_X 274 YMEKTGPKQTEGFRKRWFTMDD--RRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPST-----QGHHWPHGITIVTP 346 (386)
T ss_dssp EEEECCTTSCSCCEEEEEEEET--TEEEEESSTTCSBCSEEEECCCGGGTCEEEESCCTTC-----CSCCSCEEEEEECS
T ss_pred eEEEECCCCCCCCcccEEEEEC--CEEEEEecCCCcccceEEEeecceeeeeecccCCccc-----cccCCCcEEEEEeC
Confidence 566765443 23888999983 688888743 3467888665443 22211110 00111479999999
Q ss_pred CceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 98 DRSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 98 ~rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
+|++-|.|++++|++.|+.+|+.+|..
T Consensus 347 ~rty~l~A~s~~e~~~Wi~aL~~~i~~ 373 (386)
T 3lju_X 347 DRKFLFACETESDQREWVAAFQKAVDR 373 (386)
T ss_dssp SCEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999976
No 70
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=95.13 E-value=0.14 Score=49.52 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=55.1
Q ss_pred EEEEecCCCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC-----
Q 001361 28 LLKYGRRGKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND----- 98 (1092)
Q Consensus 28 l~K~~~~~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~----- 98 (1092)
|.|-+....=+.|+|.|.. ..|.++.+. ....|+|....-+. ........||.|+...
T Consensus 14 L~K~g~~k~WkrRWfVLk~--~~L~yyk~~~~~~p~G~I~L~~~~v~~-----------~~~~~~~~~F~i~~~~~~~i~ 80 (130)
T 1v88_A 14 LKIRGTLKSWTKLWCVLKP--GVLLIYKTQKNGQWVGTVLLNACEIIE-----------RPSKKDGFCFKLFHPLEQSIW 80 (130)
T ss_dssp EEECCSSSSCEEEEEEEET--TEEEEESCSSSCCCCEEEECSSCEECC-----------CCTTTSSCEEEEECTTCCCCS
T ss_pred EEEeCCCCCceEEEEEEEC--CEEEEECCCCCCCceEEEEcCCCEEEE-----------CCCCCCCeEEEEEcCCccccc
Confidence 4443322234788899975 578877643 34468886543211 0112334799998743
Q ss_pred -------------------ceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 99 -------------------RSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 99 -------------------rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
+++-|.|++++|++.|+.+|+..+..
T Consensus 81 ~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~ 125 (130)
T 1v88_A 81 AVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKS 125 (130)
T ss_dssp CSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTT
T ss_pred cccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 23789999999999999999998853
No 71
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=95.06 E-value=0.14 Score=47.98 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=51.9
Q ss_pred eeEeEEEeCCCCeEEEecCC----ccceEEccce--eecccCCCChhhhcCCCCCCCCCeEEEEEcC-ceeEEEeCCHHH
Q 001361 38 KFCPFRLANDESILIWISGK----EEKHLKLSHV--SRIIPGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDE 110 (1092)
Q Consensus 38 ~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I--~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rsLDLia~~~~e 110 (1092)
+.|+|.|..+ .|.++.+. ....|+|... ..++. ........||.|+..+ +++-|.|+|++|
T Consensus 21 k~rwfvL~~~--~L~~yk~~~~~~p~~~i~l~~~~~~~~~~----------~~~~~r~~~F~l~~~~~~~y~f~A~s~ee 88 (112)
T 3cxb_B 21 KTCFVVLSNG--ILYQYPDRTDVIPLLSVNMGGEQCGGCRR----------ANTTDRPHAFQVILSDRPCLELSAESEAE 88 (112)
T ss_dssp EEEEEEEETT--EEEEESSSSCCSCSEEEETTC-CEEEEEE----------CCCSSCTTEEEEEETTSCCEEEECSSHHH
T ss_pred eEEEEEEECC--EEEEECCCCCCCccceEEecCCEEEeeec----------cCCCCCCeEEEEEcCCCCEEEEEcCCHHH
Confidence 6888999764 78777643 2334555421 11111 1123346799999865 889999999999
Q ss_pred HHHHHHHHHHHHHc
Q 001361 111 AEVWFTGLKALISR 124 (1092)
Q Consensus 111 ~~~Wv~gL~~Li~~ 124 (1092)
++.|+..|+..+..
T Consensus 89 ~~~Wi~ai~~~~~~ 102 (112)
T 3cxb_B 89 MAEWMQHLCQAVSK 102 (112)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988865
No 72
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=94.82 E-value=0.084 Score=52.99 Aligned_cols=76 Identities=18% Similarity=0.146 Sum_probs=52.0
Q ss_pred ceeEeEEEeCCCCeEEEecCCc------cceEEccce---eecccCCCChhhhcCCCCCCCCCeEEEEEcCceeEEEeCC
Q 001361 37 PKFCPFRLANDESILIWISGKE------EKHLKLSHV---SRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKD 107 (1092)
Q Consensus 37 p~~r~f~L~~d~~~l~W~~~k~------~~~i~l~~I---~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~rsLDLia~~ 107 (1092)
=+.|+|.|..+ .|.|+.... ...|+|..+ .+|.. .......||.|+..++++-|.|++
T Consensus 29 WkkRwfvL~~~--~L~yyk~~~~~~~~~~g~i~l~~~~~~~~~~~-----------~~~~~~~~F~I~t~~r~~~l~A~s 95 (168)
T 2j59_M 29 WKQMYVVLRGH--SLYLYKDKREQTTPSEEEQPISVNACLIDISY-----------SETKRKNVFRLTTSDCECLFQAED 95 (168)
T ss_dssp CEEEEEEEETT--EEEEESCTTCC--------CEECSSCEEEECS-----------SSCSCSSEEEEECSSCEEEEECSS
T ss_pred ceEEEEEEeCC--EEEEEECCcccccccCCceEecccceEEEecc-----------ccCCCCCEEEEEeCCceEEEEcCC
Confidence 37888999865 788876542 233444432 11111 122345799999988999999999
Q ss_pred HHHHHHHHHHHHHHHHcc
Q 001361 108 KDEAEVWFTGLKALISRS 125 (1092)
Q Consensus 108 ~~e~~~Wv~gL~~Li~~~ 125 (1092)
++|++.|+..|+..+...
T Consensus 96 ~~e~~~Wi~ai~~~~~~~ 113 (168)
T 2j59_M 96 RDDMLAWIKTIQESSNLN 113 (168)
T ss_dssp HHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999887643
No 73
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=94.57 E-value=0.098 Score=49.56 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=54.2
Q ss_pred cCCCceeEeEEEeCCCCeEEEecCCcc----------ceEEccce-eecccCCCChhhhcCCCCCCCCCeEEEEEcC-ce
Q 001361 33 RRGKPKFCPFRLANDESILIWISGKEE----------KHLKLSHV-SRIIPGQRTPIFQRYPRPEKEYQSFSLIYND-RS 100 (1092)
Q Consensus 33 ~~~kp~~r~f~L~~d~~~l~W~~~k~~----------~~i~l~~I-~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rs 100 (1092)
.++| +.|+|.|..+ .|.++.+... ..|+|... .++ ..+......||.|+..+ ++
T Consensus 29 ~~~W-k~rwfvL~~~--~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~-----------~~~~~~r~~~F~i~~~~~~~ 94 (123)
T 1wjm_A 29 NRSW-QNVYCVLRRG--SLGFYKDAKAASAGVPYHGEVPVSLARAQGSV-----------AFDYRKRKHVFKLGLQDGKE 94 (123)
T ss_dssp CCCC-EEEEEEEETT--EEEEESSHHHHTTTCBSSSCCCEECTTCEEEE-----------CTTCSSCSSEEEEECSSSCE
T ss_pred CCCc-cEEEEEEECC--EEEEEEcccccccCcccCCCceEEccCcEEee-----------cccccCCCCEEEEEEcCCcE
Confidence 3444 6788899875 7877764322 12444321 111 11123346799999876 89
Q ss_pred eEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 101 LDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 101 LDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
.-|.|+|++|++.|+..|+..+...+
T Consensus 95 ~~f~A~s~~e~~~Wi~ai~~~~~~~~ 120 (123)
T 1wjm_A 95 YLFQAKDEAEMSSWLRVVNAAIASGP 120 (123)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHCC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999987644
No 74
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.49 E-value=2.3 Score=52.48 Aligned_cols=18 Identities=28% Similarity=0.139 Sum_probs=12.3
Q ss_pred CEEEEEEcCCeEEEEeCC
Q 001361 590 YHVAVLTSRTEVYTWGKG 607 (1092)
Q Consensus 590 ~HslaLT~dG~Vy~WG~n 607 (1092)
.|+++...+|+||++|-+
T Consensus 657 gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 657 GFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp SCEEECC---CEEEECCE
T ss_pred eeeEEEeCCCEEEEEeCC
Confidence 488888888899999864
No 75
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=94.18 E-value=0.11 Score=47.48 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=48.0
Q ss_pred ceeEeEEEeCCCCeEEEecCCc----------cceEEcccee-ecccCCCChhhhcCCCCCCCCCeEEEEEcC-ceeEEE
Q 001361 37 PKFCPFRLANDESILIWISGKE----------EKHLKLSHVS-RIIPGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLI 104 (1092)
Q Consensus 37 p~~r~f~L~~d~~~l~W~~~k~----------~~~i~l~~I~-eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rsLDLi 104 (1092)
=+.|+|.|.. ..|.++.+.. ...|+|.... ++. ........||.|+..+ +++-|.
T Consensus 23 Wk~rwfvL~~--~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~-----------~~~~~~~~~F~i~~~~~~~~~~~ 89 (106)
T 1btn_A 23 WHNVYCVINN--QEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVA-----------LDYKKKKHVFKLRLSDGNEYLFQ 89 (106)
T ss_dssp CEEEEEEEET--TEEEEESSHHHHHHTCCSSSCCCEECTTCEEEEC-----------SSCCSSSSEEEEECTTSCEEEEE
T ss_pred hhEEEEEEEC--CEEEEEeCCcccccCCCCCCcceEECCCCEEEEc-----------ccccCCccEEEEEecCCCEEEEE
Confidence 3788899975 5788876432 1124443221 111 1122335799999876 999999
Q ss_pred eCCHHHHHHHHHHHHH
Q 001361 105 CKDKDEAEVWFTGLKA 120 (1092)
Q Consensus 105 a~~~~e~~~Wv~gL~~ 120 (1092)
|+|++|++.|+..|+.
T Consensus 90 A~s~~e~~~Wi~ai~~ 105 (106)
T 1btn_A 90 AKDDEEMNTWIQAISS 105 (106)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999999874
No 76
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=94.15 E-value=9.6 Score=43.10 Aligned_cols=240 Identities=11% Similarity=0.066 Sum_probs=131.0
Q ss_pred CEEEEEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCcc
Q 001361 306 DVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSN 385 (1092)
Q Consensus 306 ~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~ 385 (1092)
.|..++......+.-..||.|..|-....-.+ ..+. .....|..++......+.-..||.|+.|-...
T Consensus 175 ~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~ 242 (435)
T 1p22_A 175 SVLCLQYDERVIITGSSDSTVRVWDVNTGEML-----------NTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 242 (435)
T ss_dssp CEEEEECCSSEEEEEETTSCEEEEESSSCCEE-----------EEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSS
T ss_pred cEEEEEECCCEEEEEcCCCeEEEEECCCCcEE-----------EEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCC
Confidence 57778777777777788999999975432110 1111 12346888888777777888899999995441
Q ss_pred CCCCccCCCCCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCCe
Q 001361 386 CNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLR 465 (1092)
Q Consensus 386 ~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~ 465 (1092)
.. .......+.. ....|..++....+.+.-+.+|.|..|-...... ...+.. ....
T Consensus 243 --~~--------~~~~~~~~~~--~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~~-~~~~ 298 (435)
T 1p22_A 243 --PT--------DITLRRVLVG--HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF-----------VRTLNG-HKRG 298 (435)
T ss_dssp --SS--------CCEEEEEECC--CSSCEEEEEEETTEEEEEETTSEEEEEETTTCCE-----------EEEEEC-CSSC
T ss_pred --CC--------CceeeeEecC--CCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcE-----------EEEEcC-CCCc
Confidence 00 0000111111 2335777877777888888899999996432111 011111 1123
Q ss_pred EEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCcEEEEEec
Q 001361 466 TVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTT 545 (1092)
Q Consensus 466 I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLt~ 545 (1092)
|..++......++-. .+|.|..|-... |+ ....+. .....|..++....+.+.-..
T Consensus 299 v~~~~~~~~~l~~g~------------~dg~i~iwd~~~-~~----------~~~~~~-~h~~~v~~~~~~~~~l~sg~~ 354 (435)
T 1p22_A 299 IACLQYRDRLVVSGS------------SDNTIRLWDIEC-GA----------CLRVLE-GHEELVRCIRFDNKRIVSGAY 354 (435)
T ss_dssp EEEEEEETTEEEEEE------------TTSCEEEEETTT-CC----------EEEEEC-CCSSCEEEEECCSSEEEEEET
T ss_pred EEEEEeCCCEEEEEe------------CCCeEEEEECCC-CC----------EEEEEe-CCcCcEEEEEecCCEEEEEeC
Confidence 444544333333322 588999996432 11 011111 123457777776677777788
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEEEcCCEEEEEEcCCeEEEEeCCC
Q 001361 546 TGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGA 608 (1092)
Q Consensus 546 dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG~Vy~WG~n~ 608 (1092)
+|.|..|--.......... ...+.... .-....|..++....+.+.-..||.|..|-...
T Consensus 355 dg~i~vwd~~~~~~~~~~~--~~~~~~~~-~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 355 DGKIKVWDLVAALDPRAPA--GTLCLRTL-VEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp TSCEEEEEHHHHTSTTSCT--TTTEEEEE-CCCSSCCCCEEECSSCEEECCSSSEEEEEC---
T ss_pred CCcEEEEECCCCCCccccc--cchheeec-cCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCC
Confidence 9999999643211111000 00011111 111234666666566666666799999997644
No 77
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=94.13 E-value=0.16 Score=48.96 Aligned_cols=86 Identities=15% Similarity=0.158 Sum_probs=57.0
Q ss_pred eEEEEecC---CCceeEeEEEeCCCCeEEEec-----C---CccceEEccc--eeecccCCCChhhhcCCCCCCCCCeEE
Q 001361 27 HLLKYGRR---GKPKFCPFRLANDESILIWIS-----G---KEEKHLKLSH--VSRIIPGQRTPIFQRYPRPEKEYQSFS 93 (1092)
Q Consensus 27 ~l~K~~~~---~kp~~r~f~L~~d~~~l~W~~-----~---k~~~~i~l~~--I~eVr~G~~t~~f~~~~~~~~~~~~FS 93 (1092)
.|.|-++. .| |+|+|.|..+ .|.++. . .....|.|.. |..+-+.. +......+|.
T Consensus 13 ~L~KqG~~~~K~W-KrRwFVL~~~--~LyYfk~~~~~~~~~~p~G~I~L~g~tV~~~~~~~---------~~~~~k~~F~ 80 (126)
T 1wi1_A 13 YLWAIGKNVWKRW-KKRFFVLVQV--SQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQP---------GLEGGRAFFN 80 (126)
T ss_dssp EEEEECSSSCCSC-EEEEEEEEEE--ETTEEEEEECCSSSSCCSEEEECSSCEEEECCCCS---------SCCSCSSEEE
T ss_pred EEEEeCCCccccc-ceEEEEEeCC--EEEEEEcccccccCCCCceEEECCCcEEEEecCCc---------ccccCceEEE
Confidence 57777653 44 7799999976 343332 2 1344577764 22322211 1122346899
Q ss_pred EEEcCceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 94 LIYNDRSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 94 iiy~~rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
|+..+++.=|.|++++|++.|+.+|+.-+..
T Consensus 81 ~v~~~~ty~~~Adseee~~~WikAi~~A~~~ 111 (126)
T 1wi1_A 81 AVKEGDTVIFASDDEQDRILWVQAMYRATGQ 111 (126)
T ss_dssp EECSSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EecCCceEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 9987788889999999999999999987754
No 78
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=94.05 E-value=0.39 Score=45.20 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=56.7
Q ss_pred eEEEEecCCCc-eeEeEEEeCCC-CeEEEecCC----ccceEEccceeeccc-CCCChhhhcCCCCCCCCCeEEEEEcCc
Q 001361 27 HLLKYGRRGKP-KFCPFRLANDE-SILIWISGK----EEKHLKLSHVSRIIP-GQRTPIFQRYPRPEKEYQSFSLIYNDR 99 (1092)
Q Consensus 27 ~l~K~~~~~kp-~~r~f~L~~d~-~~l~W~~~k----~~~~i~l~~I~eVr~-G~~t~~f~~~~~~~~~~~~FSiiy~~r 99 (1092)
.|.|-++ ++. +.|.|.|..+. ..|.++.++ ....|+|... .|.. .. ........||-|+.+.+
T Consensus 13 ~L~k~~~-~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p~g~I~L~g~-~V~~~~~--------~~~~~~~~~Fki~~~~~ 82 (112)
T 2coc_A 13 PLRLSES-GETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSC-KLSVPDP--------EERLDSGHVWKLQWAKQ 82 (112)
T ss_dssp EEEEESS-SSCEEEEEEECCTTCTTCEEEECCTTCSSSCSEECGGGC-EEECCCS--------SSCCSSSEEEEEEETTE
T ss_pred EEEecCC-CCCceEEEEEEECCCccEEEEECCCCccCcceEEEcCCC-EEEecCc--------ccccCCCCEEEEecCCe
Confidence 4556333 343 56677787653 467766533 4456888433 2211 00 11122457999998889
Q ss_pred eeEEEeCCHHHHHHHHHHHHHHHH
Q 001361 100 SLDLICKDKDEAEVWFTGLKALIS 123 (1092)
Q Consensus 100 sLDLia~~~~e~~~Wv~gL~~Li~ 123 (1092)
+.-|.|+|+++++.|+..|+....
T Consensus 83 ~y~f~A~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 83 SWYLSASSAELQQQWLETLSTAAH 106 (112)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHS
T ss_pred EEEEEcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999987654
No 79
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=93.81 E-value=0.019 Score=66.37 Aligned_cols=42 Identities=17% Similarity=0.417 Sum_probs=36.9
Q ss_pred ccccccccccCCCCCcCC-cccccccccccccceEEeccCCCc
Q 001361 651 KWVSGVDQSMCSGCRIPF-NFKRKRHNCYNCGLVYCHTCSSKK 692 (1092)
Q Consensus 651 kwvs~~d~s~C~~C~~~F-~~~~krhhC~~CG~v~C~~Css~~ 692 (1092)
.|.+......|..|+..| ++.+++|||+.||.++|..|+...
T Consensus 350 ~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~ 392 (406)
T 2vrw_B 350 QMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRV 392 (406)
T ss_dssp EEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGS
T ss_pred ccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhC
Confidence 466788889999999888 699999999999999999998653
No 80
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=93.57 E-value=7.3 Score=47.37 Aligned_cols=73 Identities=16% Similarity=0.158 Sum_probs=39.0
Q ss_pred CcEEEEEecCCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEE----EcCCEE-EEEEcCCeEEEEeCCCCCC
Q 001361 537 HSLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIA----CGDYHV-AVLTSRTEVYTWGKGANGR 611 (1092)
Q Consensus 537 ~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia----~G~~Hs-laLT~dG~Vy~WG~n~~GQ 611 (1092)
..|++++..+|+||++|-...+...........+..... .......+. .-.+|+ +++..+|+||+.|-+.+|.
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp--~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVP--EQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEG--GGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT
T ss_pred ccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcC--CCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC
Confidence 357777778999999996554431111111111111111 111222222 124565 5556899999999876653
No 81
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=93.39 E-value=0.1 Score=60.05 Aligned_cols=89 Identities=24% Similarity=0.388 Sum_probs=63.1
Q ss_pred hcCCeEEEEec-CCCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEE-
Q 001361 23 KKGAHLLKYGR-RGKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIY- 96 (1092)
Q Consensus 23 ~~Gt~l~K~~~-~~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy- 96 (1092)
++|- |.|-+. ...-+.|+|.|+.....|.|+.+. ....|.|+++..+.. .. ......+|-|.|
T Consensus 148 keG~-L~KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~p~g~I~L~~~~~~~~---~~-------~~~~~~~f~I~~~ 216 (386)
T 3lju_X 148 REGF-LWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQ---PA-------KIGHPHGLQVTYL 216 (386)
T ss_dssp EEEE-EEEECSSSCCEEEEEEEEETTTTEEEEEC-----CCSEEEEGGGEEEEEC---HH-------HHTSTTCEEEEEE
T ss_pred cccc-eeeeccccCCceEEEEEEEcCCCEEEEECCCCccCcccEEEeeccEEEEc---cc-------ccCCCceEEEEEe
Confidence 4444 455544 344588999998666899988643 456799999877661 11 112357899987
Q ss_pred --c-CceeEEEeCCHHHHHHHHHHHHHHH
Q 001361 97 --N-DRSLDLICKDKDEAEVWFTGLKALI 122 (1092)
Q Consensus 97 --~-~rsLDLia~~~~e~~~Wv~gL~~Li 122 (1092)
+ .|++-|.|+|.+|++.|+..|+...
T Consensus 217 ~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~ 245 (386)
T 3lju_X 217 KDNSTRNIFIYHEDGKEIVDWFNALRAAR 245 (386)
T ss_dssp ETTEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEEcCCHHHHHHHHHhhhhcc
Confidence 2 2899999999999999999998653
No 82
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=93.28 E-value=0.28 Score=55.56 Aligned_cols=86 Identities=26% Similarity=0.308 Sum_probs=59.9
Q ss_pred eEEEEecC-CCceeEeEEEeCCCCeEEEecCC----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc----
Q 001361 27 HLLKYGRR-GKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN---- 97 (1092)
Q Consensus 27 ~l~K~~~~-~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~---- 97 (1092)
+|.|-+.+ ..-+.|+|.|.. ..|.|+... ....|+|.++. |+.-. ......||.|+..
T Consensus 218 ~L~K~g~~~k~WkkRwFVL~~--~~L~Yyk~~~~~~p~G~I~L~~~~-v~~~~----------~~~~~~~F~I~~~~~~~ 284 (347)
T 2r09_A 218 WLLKLGGRVKTWKRRWFILTD--NCLYYFEYTTDKEPRGIIPLENLS-IREVE----------DPRKPNCFELYNPSHKG 284 (347)
T ss_dssp EEEEECSSSCCEEEEEEEEET--TEEEEESSTTCSSCSEEEECTTCE-EEEEC----------CSSCSSEEEEECSSSTT
T ss_pred eeEecCCCcccceeEEEEEcC--CEEEEEcCCCccCCcEEEEcCCeE-EEEcc----------CCCCCCEEEEEeCCccc
Confidence 45665432 334788899985 478888643 34578888775 33221 1233568888763
Q ss_pred ------------------CceeEEEeCCHHHHHHHHHHHHHHHHcc
Q 001361 98 ------------------DRSLDLICKDKDEAEVWFTGLKALISRS 125 (1092)
Q Consensus 98 ------------------~rsLDLia~~~~e~~~Wv~gL~~Li~~~ 125 (1092)
.|++-|.|++++|++.|+..|+..+...
T Consensus 285 ~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~~ 330 (347)
T 2r09_A 285 QVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD 330 (347)
T ss_dssp CCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHCC
T ss_pred cccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 3789999999999999999999988754
No 83
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=92.78 E-value=0.49 Score=45.41 Aligned_cols=75 Identities=13% Similarity=0.159 Sum_probs=52.1
Q ss_pred eeEeEEEeCCCCeEEEecCC---------------ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC-cee
Q 001361 38 KFCPFRLANDESILIWISGK---------------EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND-RSL 101 (1092)
Q Consensus 38 ~~r~f~L~~d~~~l~W~~~k---------------~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rsL 101 (1092)
+.|+|.|..+ .|.++.+. ....|+|....-... .+......+|.|...+ ++.
T Consensus 35 k~rwfvL~~~--~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~----------~~~~kr~~~F~l~t~~~~~y 102 (129)
T 2p0d_A 35 GPSWVVLTGN--SLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHG----------RHLSSRRNVLHIRTIPGHEF 102 (129)
T ss_dssp EEEEEEEESS--EEEEESCC--------------CCSEEEECTTCEEEEC----------TTSCSSSSEEEEECTTSCEE
T ss_pred eEEEEEEeCC--EEEEEcCcccccccccccccCCCCccEEEeCCcEEEEC----------CCCCCCCcEEEEEcCCCCEE
Confidence 6788999864 67777543 233466654331111 1112335799999866 678
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHc
Q 001361 102 DLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 102 DLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
-|.|++++|++.|+..|+..|..
T Consensus 103 l~qA~s~~e~~~Wi~aI~~~i~~ 125 (129)
T 2p0d_A 103 LLQSDHETELRAWHRALRTVIER 125 (129)
T ss_dssp EEECSCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999875
No 84
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=92.62 E-value=0.15 Score=53.80 Aligned_cols=85 Identities=19% Similarity=0.235 Sum_probs=63.9
Q ss_pred CEEEEEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCcc
Q 001361 306 DVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSN 385 (1092)
Q Consensus 306 ~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~ 385 (1092)
.|.+|+-...|.+++--+++++.||.+++||+-..... .+..++.+|.++++-+..-..+-.||+..
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta-------------gPfla~~AG~~fTVTVn~~nyv~FWGDSP 376 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA-------------GPYIQLAAGHNFTVTVNTLNQVMFWGDSP 376 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG-------------CCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCCc-------------chHHhHhccCCeEEEEeceeeEEEecCCC
Confidence 56678888999999999999999999999998544321 36789999999999999999999999885
Q ss_pred CCCCc-cCCCCCcceecce
Q 001361 386 CNFGL-LGHGNEMSLWLPK 403 (1092)
Q Consensus 386 ~~~Gq-LG~g~~~~~~~P~ 403 (1092)
++.-+ -|.++...+..|+
T Consensus 377 DNSLLwnGr~t~~~~~~~~ 395 (400)
T 4gbf_A 377 DNSLLWNGRGTRVKHIEPT 395 (400)
T ss_dssp TSTTCCTTCCSBCCCCCCC
T ss_pred CcceeecCccceeeeccCC
Confidence 43222 2444444444444
No 85
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=92.57 E-value=0.57 Score=44.59 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=56.5
Q ss_pred hcCCeEEEEecC-CCceeEeEEEeCCCCeEEEecCC-------ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEE
Q 001361 23 KKGAHLLKYGRR-GKPKFCPFRLANDESILIWISGK-------EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSL 94 (1092)
Q Consensus 23 ~~Gt~l~K~~~~-~kp~~r~f~L~~d~~~l~W~~~k-------~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSi 94 (1092)
+.| .|.|-+.. ..-+.|+|.|.++ .|.++.+. ....|+|.+-.=...-..- -.+.........+|.|
T Consensus 8 k~G-~L~Kk~~~~k~W~~rwfVL~~~--~L~yyK~~~~~~d~~P~gsI~L~~c~v~~~~~~~--~~~~~~~~~~~~~F~i 82 (120)
T 4a6h_A 8 KSG-FLERRSKFLKSYSKGYYVLTPN--FLHEFKTADRKKDLVPVMSLALSECTVTEHSRKN--STSSPNSTGSDAKFVL 82 (120)
T ss_dssp EEE-EEEEEETTTTEEEEEEEEECSS--EEEEESSCCTTTCCSCSEEEEGGGEEEEEECCCC--C---------CCEEEE
T ss_pred EEE-EEEEcCCCCCCCccEEEEEeCC--EEEEEcCCCcCcCCCceEEEECCCCEEEEccccc--ccccccccCCCcEEEE
Confidence 445 45554443 2347788999876 88887532 3356777543211111000 0000001225678999
Q ss_pred EEcC-------ceeEEEeCCHHHHHHHHHHHHHHH
Q 001361 95 IYND-------RSLDLICKDKDEAEVWFTGLKALI 122 (1092)
Q Consensus 95 iy~~-------rsLDLia~~~~e~~~Wv~gL~~Li 122 (1092)
...+ ++.-|.|.+.+|++.|+..|+.+.
T Consensus 83 ~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 83 HAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp EESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred EeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence 8855 589999999999999999999875
No 86
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=90.99 E-value=0.27 Score=52.00 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=57.0
Q ss_pred eEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCcEEEEEe
Q 001361 465 RTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALT 544 (1092)
Q Consensus 465 ~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLt 544 (1092)
.|..|+.-+.|+.++. .+++||.+|+++.||+-..+.. .++.++.+|+++|+-+.
T Consensus 310 ~i~~VsG~y~H~vvi~------------gd~el~sFG~~sNGQ~~ip~ta-------------gPfla~~AG~~fTVTVn 364 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMY------------GDGQIAFFGNNDNGQCDVDDHA-------------GPYIQLAAGHNFTVTVN 364 (400)
T ss_dssp CCCCCBCSSSEEEC-C------------TTTCCCEEECCTTSTTCCCGGG-------------CCEEEEEECSSEEEEEE
T ss_pred ccccccccccceEEEe------------cCceeEEeccCCCCceecCCCc-------------chHHhHhccCCeEEEEe
Confidence 4677788889998875 5889999999999999765432 46889999999999999
Q ss_pred cCCcEEEEeCCCCC
Q 001361 545 TTGHVYTMGSPVYG 558 (1092)
Q Consensus 545 ~dG~Vy~wG~N~~G 558 (1092)
.-..|-.||..-..
T Consensus 365 ~~nyv~FWGDSPDN 378 (400)
T 4gbf_A 365 TLNQVMFWGDSPDN 378 (400)
T ss_dssp TTCCEEEEECCTTS
T ss_pred ceeeEEEecCCCCc
Confidence 99999999975443
No 87
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=90.63 E-value=26 Score=39.48 Aligned_cols=229 Identities=8% Similarity=0.016 Sum_probs=133.5
Q ss_pred CEEEEEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCcc
Q 001361 306 DVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSN 385 (1092)
Q Consensus 306 ~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~ 385 (1092)
.|..++....+.+.-..||.|..|-....-. ...+. .....|..++......+.-..||.|+.|-...
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~-----------~~~~~-~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC-----------KRILT-GHTGSVLCLQYDERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCCE-----------EEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCCeE-----------EEEEc-CCCCcEEEEEECCCEEEEEcCCCeEEEEECCC
Confidence 4666777777777788999999996432110 11111 12346788887666677778899999996441
Q ss_pred CCCCccCCCCCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCCe
Q 001361 386 CNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLR 465 (1092)
Q Consensus 386 ~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~ 465 (1092)
+. . ...+.. ....|..++......+.-+.+|.|+.|-......+ .+..........
T Consensus 203 ---~~-------~---~~~~~~--h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~---------~~~~~~~~~~~~ 258 (435)
T 1p22_A 203 ---GE-------M---LNTLIH--HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI---------TLRRVLVGHRAA 258 (435)
T ss_dssp ---CC-------E---EEEECC--CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC---------EEEEEECCCSSC
T ss_pred ---Cc-------E---EEEEcC--CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc---------eeeeEecCCCCc
Confidence 11 0 111111 23468888887778888889999999964321111 011111111224
Q ss_pred EEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCcEEEEEec
Q 001361 466 TVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTT 545 (1092)
Q Consensus 466 I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLt~ 545 (1092)
|..++....+.+... .+|.|..|-.... + ....+. .....|..+.......++-..
T Consensus 259 v~~~~~~~~~l~s~~------------~dg~i~vwd~~~~-~----------~~~~~~-~~~~~v~~~~~~~~~l~~g~~ 314 (435)
T 1p22_A 259 VNVVDFDDKYIVSAS------------GDRTIKVWNTSTC-E----------FVRTLN-GHKRGIACLQYRDRLVVSGSS 314 (435)
T ss_dssp EEEEEEETTEEEEEE------------TTSEEEEEETTTC-C----------EEEEEE-CCSSCEEEEEEETTEEEEEET
T ss_pred EEEEEeCCCEEEEEe------------CCCeEEEEECCcC-c----------EEEEEc-CCCCcEEEEEeCCCEEEEEeC
Confidence 555555444333332 5899999964321 1 011111 123457777777777777888
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEEEcCCEEEEEEcCCeEEEEeC
Q 001361 546 TGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGK 606 (1092)
Q Consensus 546 dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG~Vy~WG~ 606 (1092)
+|.|..|-.... + ....+. .....|..|+....+.+.-..+|.|..|-.
T Consensus 315 dg~i~iwd~~~~-~---------~~~~~~--~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 315 DNTIRLWDIECG-A---------CLRVLE--GHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp TSCEEEEETTTC-C---------EEEEEC--CCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred CCeEEEEECCCC-C---------EEEEEe--CCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 999999975321 1 111111 123457778876677777788999999964
No 88
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.25 E-value=1.9 Score=39.74 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
.++-.++-.+|.+|.++..+++.++++++.++.+|.....+.-.+.-.|-.-+.+|+-++.-|
T Consensus 36 e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 36 EERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777999999999999999999999999988776655444455667889998866544
No 89
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=90.10 E-value=0.68 Score=44.89 Aligned_cols=91 Identities=13% Similarity=0.205 Sum_probs=63.0
Q ss_pred cCCeEEEEecCCCceeEeEEEeCCCCeEEEecC--C-----ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEE
Q 001361 24 KGAHLLKYGRRGKPKFCPFRLANDESILIWISG--K-----EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIY 96 (1092)
Q Consensus 24 ~Gt~l~K~~~~~kp~~r~f~L~~d~~~l~W~~~--k-----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy 96 (1092)
.+..++++++.+..+.|+|.|=++ .|+..+. + =+..|+|..|.=... . +......||.|.-
T Consensus 31 ~s~v~~~~~~~~~~~eR~l~LF~~--~Ll~~s~~~~~~~f~~kgklPL~g~~V~~~-e---------d~~~~~~aFeI~g 98 (132)
T 1v61_A 31 MSQVVMQHGACEEKEERYFLLFSS--VLIMLSASPRMSGFMYQGKIPIAGMVVNRL-D---------EIEGSDCMFEITG 98 (132)
T ss_dssp EEEEEBCCSSSSCCCEEEEEECSS--CEEEEECSSSSSCCEEEEEECTTTCBCSTT-C---------SSSSSCCCEEEEC
T ss_pred EeeEEEEEcccCcceEEEEEEcCC--eEEEEEecCCCceEEEEEEEecceeEEEec-c---------ccccCccEEEEec
Confidence 345566666666789999999887 3444432 2 134567765542111 1 1133457999987
Q ss_pred cC-ceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 97 ND-RSLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 97 ~~-rsLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
.. +++=+.|.+++|.+.|+..|+.++..+.
T Consensus 99 ~~~~~i~v~~~s~eE~~~Wl~~L~~~i~~~~ 129 (132)
T 1v61_A 99 STVERIVVHCNNNQDFQEWMEQLNRLTKSGP 129 (132)
T ss_dssp SSSCEEEECCCCSHHHHHHHHHHHHHHTTSC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHHhhcc
Confidence 66 8999999999999999999999997654
No 90
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=90.02 E-value=1.1 Score=44.41 Aligned_cols=36 Identities=19% Similarity=0.405 Sum_probs=31.1
Q ss_pred CCCeEEEEEcC---ceeEEEeCCHHHHHHHHHHHHHHHH
Q 001361 88 EYQSFSLIYND---RSLDLICKDKDEAEVWFTGLKALIS 123 (1092)
Q Consensus 88 ~~~~FSiiy~~---rsLDLia~~~~e~~~Wv~gL~~Li~ 123 (1092)
....|.|...+ ++++|.|++.++++-|+..|+..+.
T Consensus 110 ~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~ 148 (150)
T 2fjl_A 110 RLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQ 148 (150)
T ss_dssp CSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 45699999964 7999999999999999999987664
No 91
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=90.01 E-value=1.2 Score=48.21 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=53.3
Q ss_pred eeEeEEEeCCCCeEEEecCC----------ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEE-cCceeEEEeC
Q 001361 38 KFCPFRLANDESILIWISGK----------EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIY-NDRSLDLICK 106 (1092)
Q Consensus 38 ~~r~f~L~~d~~~l~W~~~k----------~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy-~~rsLDLia~ 106 (1092)
+.|+|.|..+ .|.|+.++ ....|+|..-. .. ...+......||.|+. .+++.-|.|+
T Consensus 40 krRWfVL~~~--~L~yyK~~~~~~~~~~~~p~g~I~L~~~~-------v~---~~~~~~kk~~~F~I~t~~~r~y~f~A~ 107 (263)
T 3a8p_A 40 KQYWVTLKGC--TLLFYETYGKNSTEQNSAPRCALFAEDSI-------VQ---SVPEHPKKEHVFCLSNSCGDVYLFQAT 107 (263)
T ss_dssp EEEEEEEETT--EEEEESSCCC------CCCSEEEECTTCE-------EE---ECTTCSSCSSEEEEECTTSCEEEEECS
T ss_pred eEEEEEEcCC--EEEEEecCcccccccccCccceEEcCCcE-------EE---ECCcCCCCCCEEEEEcCCCcEEEEEcC
Confidence 6788999876 78888642 12345653211 10 0111123468999999 5699999999
Q ss_pred CHHHHHHHHHHHHHHHHccc
Q 001361 107 DKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 107 ~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
|++|++.|+..|+..+....
T Consensus 108 s~ee~~~Wi~aI~~a~~~~~ 127 (263)
T 3a8p_A 108 SQTDLENWVTAIHSACASLF 127 (263)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999887643
No 92
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=89.89 E-value=0.56 Score=51.13 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=55.0
Q ss_pred EEEEecC-CCceeEeEEEeCCCCeEEEecCC----ccceEEccceeec--ccCCCChhhhcCCCCCCCCCeEEEEEcC--
Q 001361 28 LLKYGRR-GKPKFCPFRLANDESILIWISGK----EEKHLKLSHVSRI--IPGQRTPIFQRYPRPEKEYQSFSLIYND-- 98 (1092)
Q Consensus 28 l~K~~~~-~kp~~r~f~L~~d~~~l~W~~~k----~~~~i~l~~I~eV--r~G~~t~~f~~~~~~~~~~~~FSiiy~~-- 98 (1092)
|.|-+.+ ..=+.|+|.|..+ .|.|+... ....|.|.++..+ ..+...+ +. ...+-..||.|++.+
T Consensus 174 L~k~~~~~k~WkkR~fvL~~~--~L~yyk~~~~~~~~~~i~l~~l~~~~v~~~~~~~---~~-~~~~~~~~F~i~~~~~~ 247 (291)
T 3tca_A 174 LYLKEDGKKSWKRRYFLLRAS--GIYYVPKGKTKTSRDLACFIQFENVNIYYGIQCK---MK-YKAPTDHCFVLKHPQIQ 247 (291)
T ss_dssp EEEECTTSSCEEEEEEEECSS--EEEECCTTCCSSTTTCEEEEEGGGCEEEEECSHH---HH-HCCSSSCEEEEECTTCC
T ss_pred EEEeCCCCCCceEEEEEEeCC--EEEEEecCccccccCceeeccceeEEEEecCccc---cc-cCCCCCeEEEEEcCCCC
Confidence 5555332 2347788899654 68777532 3345666554332 2222211 10 012335799999843
Q ss_pred ----ceeEEEeCCHHHHHHHHHHHHHHH
Q 001361 99 ----RSLDLICKDKDEAEVWFTGLKALI 122 (1092)
Q Consensus 99 ----rsLDLia~~~~e~~~Wv~gL~~Li 122 (1092)
++..|.|+|+++++.|+.+|+...
T Consensus 248 ~~~~~~~~l~A~s~~e~~~Wi~air~Ak 275 (291)
T 3tca_A 248 KESQYIKYLCCDDARTLSQWVMGIRIAK 275 (291)
T ss_dssp SCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 678899999999999999998553
No 93
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=89.32 E-value=2 Score=37.53 Aligned_cols=72 Identities=22% Similarity=0.324 Sum_probs=56.9
Q ss_pred CCcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 854 SPKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 854 ~~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
....++|-|+++ .++|-+.++++.+|++- +.||..-++||++.+.--..|-+. ....|..|....+||.+-|
T Consensus 4 llSAVeDKLRrrl~E~~~q~qaEl~sLrrT----~~EL~~G~~KL~~mi~~l~~E~~~---l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 4 LISAVSDKLRWRMKEEMDRAQAELNALKRT----EEDLKKGHQKLEEMVTRLDQEVAE---VDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 334567889999 88899999999999874 678888889999988877777666 5667777888888887543
No 94
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=89.01 E-value=0.85 Score=43.00 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=32.7
Q ss_pred CCCCeEEEEEc-CceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 87 KEYQSFSLIYN-DRSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 87 ~~~~~FSiiy~-~rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
+...||.|+.. .++.-|.|+|++|++.|+..|+..+..
T Consensus 82 kr~~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~ 120 (122)
T 1dro_A 82 KKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS 120 (122)
T ss_dssp SSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 34579999974 488889999999999999999998864
No 95
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=88.73 E-value=16 Score=44.99 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=14.7
Q ss_pred CCeEEEEEc-CCcEEEeec
Q 001361 421 PWHTAVVTS-AGQLFTFGD 438 (1092)
Q Consensus 421 ~~Ht~aLt~-dG~Vy~wG~ 438 (1092)
..|++++.. +|+||.+|-
T Consensus 441 ~~hs~~~~~~~~~lyv~GG 459 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGG 459 (695)
T ss_dssp BSCEEEEETTTTEEEEECC
T ss_pred cceEEEEEccCCEEEEEcC
Confidence 368888876 999999983
No 96
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=88.13 E-value=1.1 Score=51.34 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=51.4
Q ss_pred ceeEeEEEeCCCCeEEEecCCc---cceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC--ceeEEEeCCHHHH
Q 001361 37 PKFCPFRLANDESILIWISGKE---EKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND--RSLDLICKDKDEA 111 (1092)
Q Consensus 37 p~~r~f~L~~d~~~l~W~~~k~---~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~--rsLDLia~~~~e~ 111 (1092)
-+.|+|.|..+ .|.|+.... ...|+|.... |+. ........||.|+..+ ++.-|.|++++|+
T Consensus 297 WkkRwfvL~~~--~L~y~k~~~~~~~~~i~l~~~~-v~~----------~~~~~r~~~F~i~t~~~~~~~~l~A~s~~e~ 363 (385)
T 2q13_A 297 WDRQFYFTQGG--NLMSQARGDVAGGLAMDIDNCS-VMA----------VDCEDRRYCFQITSFDGKKSSILQAESKKDH 363 (385)
T ss_dssp CEEEEEEEETT--EEEEECSSCSSCEEEEECTTCE-EEE----------ECCTTCSSEEEEECTTSCBCCCEECSSHHHH
T ss_pred ceeEEEEEECC--EEEEecCCCcCCCceEEccceE-EEe----------ccccCCCceEEEEeCCCCeEEEEEeCCHHHH
Confidence 47788899854 677776532 1234443211 111 0112334699999977 9999999999999
Q ss_pred HHHHHHHHHHHHc
Q 001361 112 EVWFTGLKALISR 124 (1092)
Q Consensus 112 ~~Wv~gL~~Li~~ 124 (1092)
+.|+..|+..+..
T Consensus 364 ~~Wi~ai~~~~~~ 376 (385)
T 2q13_A 364 EEWICTINNISKQ 376 (385)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 97
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=87.71 E-value=40 Score=37.84 Aligned_cols=229 Identities=10% Similarity=0.021 Sum_probs=132.1
Q ss_pred CEEEEEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCcc
Q 001361 306 DVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSN 385 (1092)
Q Consensus 306 ~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~ 385 (1092)
.|..++......+.-..||.|+.|-....-. ...+. .....|..++......+..+.||.|+.|-...
T Consensus 161 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~ 228 (445)
T 2ovr_B 161 GVWSSQMRDNIIISGSTDRTLKVWNAETGEC-----------IHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 228 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTTEE-----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSS
T ss_pred CEEEEEecCCEEEEEeCCCeEEEEECCcCcE-----------EEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECCC
Confidence 5666766677777778899999996433110 01111 12345777777777777788899999996441
Q ss_pred CCCCccCCCCCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCCe
Q 001361 386 CNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLR 465 (1092)
Q Consensus 386 ~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~ 465 (1092)
+. . ...+.. ....|..++......+.-+.+|.|+.|-...... ...+. .....
T Consensus 229 ---~~-------~---~~~~~~--~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~-~~~~~ 281 (445)
T 2ovr_B 229 ---GQ-------C---LHVLMG--HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC-----------LHTLQ-GHTNR 281 (445)
T ss_dssp ---CC-------E---EEEEEC--CSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEE-----------EEEEC-CCSSC
T ss_pred ---Cc-------E---EEEEcC--CcccEEEEEECCCEEEEEcCCCEEEEEECCCCcE-----------eEEec-CCCCc
Confidence 10 0 011111 1335777777777777788899999995332110 01111 11224
Q ss_pred EEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCcEEEEEec
Q 001361 466 TVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTT 545 (1092)
Q Consensus 466 I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLt~ 545 (1092)
|..++....+.+.-. .+|.|+.|-...... ...+. .....+..+.......++-..
T Consensus 282 v~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~ 337 (445)
T 2ovr_B 282 VYSLQFDGIHVVSGS------------LDTSIRVWDVETGNC-----------IHTLT-GHQSLTSGMELKDNILVSGNA 337 (445)
T ss_dssp EEEEEECSSEEEEEE------------TTSCEEEEETTTCCE-----------EEEEC-CCCSCEEEEEEETTEEEEEET
T ss_pred eEEEEECCCEEEEEe------------CCCeEEEEECCCCCE-----------EEEEc-CCcccEEEEEEeCCEEEEEeC
Confidence 566655444433332 589999996432110 01111 122356666666777777788
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCccceeecc-ccCCCCEEEEEEcCCEEEEEEcCCeEEEEeCC
Q 001361 546 TGHVYTMGSPVYGQLGDPKANGKLPTRVEG-KLTKNFVEEIACGDYHVAVLTSRTEVYTWGKG 607 (1092)
Q Consensus 546 dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~-~l~~~~I~~Ia~G~~HslaLT~dG~Vy~WG~n 607 (1092)
+|.|+.|-.... .....+.. ......|..++....+.+.-..||.|+.|-..
T Consensus 338 dg~i~vwd~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 338 DSTVKIWDIKTG----------QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp TSCEEEEETTTC----------CEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred CCeEEEEECCCC----------cEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 999999964321 11111111 01234588888877777777889999999754
No 98
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=86.76 E-value=2.2 Score=34.43 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 910 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k 910 (1092)
..|.+|-++|..|..|.+++..++..++-.++ -|.|||++
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~----~ak~eA~R 43 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQ----AAKDDAAR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 46788889999999999999999998887665 68888888
No 99
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=86.56 E-value=1.2 Score=51.35 Aligned_cols=75 Identities=12% Similarity=0.156 Sum_probs=49.5
Q ss_pred eeEeEEEeCCCCeEEEecCCc---cceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC--ceeEEEeCCHHHHH
Q 001361 38 KFCPFRLANDESILIWISGKE---EKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND--RSLDLICKDKDEAE 112 (1092)
Q Consensus 38 ~~r~f~L~~d~~~l~W~~~k~---~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~--rsLDLia~~~~e~~ 112 (1092)
+.|+|.|.. ..|.|+.... ...|+|... .|++. .......||-|+..+ +++-|.|.|++|++
T Consensus 321 ~rrwfvl~~--~~l~y~~~~~~~~~~~~~l~~~-~v~~~----------~~~~r~~cF~i~~~~~~~~~~l~A~s~~e~~ 387 (407)
T 4h8s_A 321 ERLYFFTQG--GNLMCQPRGAVAGGLIQDLDNC-SVMAV----------DCEDRRYCFQITTPNGKSGIILQAESRKENE 387 (407)
T ss_dssp EEEEEEECS--SCEECCCTTCSSCCCCBCSSCC-EEEEE----------CCTTCSSEEEEECTTSSCCEEEECSSSHHHH
T ss_pred eEEEEEEEC--CEEEEEeCCCCCCCeEEECCce-EEEEC----------CCCCCCceEEEEecCCCceEEEEcCCHHHHH
Confidence 677788864 5788876332 222333211 12111 112224599999954 78999999999999
Q ss_pred HHHHHHHHHHHcc
Q 001361 113 VWFTGLKALISRS 125 (1092)
Q Consensus 113 ~Wv~gL~~Li~~~ 125 (1092)
.|+..|+..+...
T Consensus 388 ~Wi~ai~~a~~~~ 400 (407)
T 4h8s_A 388 EWICAINNISRQI 400 (407)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 100
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.71 E-value=1.4 Score=40.97 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
|.+|+.|+..|+++++..++|++++++..+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 444444444444444444444444444433
No 101
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=85.58 E-value=0.45 Score=46.28 Aligned_cols=54 Identities=20% Similarity=0.479 Sum_probs=41.4
Q ss_pred cccccCCCCCcCCcccc-cccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhh
Q 001361 656 VDQSMCSGCRIPFNFKR-KRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGK 715 (1092)
Q Consensus 656 ~d~s~C~~C~~~F~~~~-krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~ 715 (1092)
.+...|..|..+|+|.. ..+.|..|..-+|..|+.... ....++.=+|..|+.+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~------~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETS------NNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECC------CSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccC------CCCCccceechhhHHH
Confidence 35678999999998654 567799999999999976531 1124667899999875
No 102
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=84.44 E-value=49 Score=35.70 Aligned_cols=230 Identities=11% Similarity=0.062 Sum_probs=123.4
Q ss_pred eEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEe--CCCeEEEEEeCCcEEEeCCccCCCCccCC
Q 001361 316 HAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVAC--GEHHTCAVTLSGDMYTWGGSNCNFGLLGH 393 (1092)
Q Consensus 316 hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~--G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~ 393 (1092)
-+++|+++|-|-.-. ||.. .+..+..+.. ...+.+++|++|++|.---. .|-.
T Consensus 3 vtvils~~Gwir~~~-------g~~~-------------~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~-----~lp~ 57 (276)
T 3no0_A 3 ITVAVLQDGSIIPVE-------ELPL-------------EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGS-----QALQ 57 (276)
T ss_dssp EEEEEETTSEEEEGG-------GCCS-------------SCCCEEEEEEEETTSCEEEEETTSEEEEECSH-----HHHT
T ss_pred EEEEEcCCceeeecc-------CCCC-------------CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhh-----hCcc
Confidence 367888999555322 2211 3444555543 34568899999999976422 1110
Q ss_pred CCCcceecceeecCCCCCCcEEEEEeC---CCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCCeEEEEe
Q 001361 394 GNEMSLWLPKKLNGPLEGIHVSSVSCG---PWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAA 470 (1092)
Q Consensus 394 g~~~~~~~P~~v~~~l~~~~I~~IscG---~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va 470 (1092)
+.... + ..++.+|+.+.+- ....+++|.+|.+.-.-...|-+-. .-...+..-.+-.++.+.
T Consensus 58 ~~~~~------l--l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~-------~G~~~i~lkegD~l~~~~ 122 (276)
T 3no0_A 58 GSKVS------L--KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKA-------QGMPIIKLTEGDEVVSIA 122 (276)
T ss_dssp SEECC------C--SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCS-------TTEECSCCCTTCCEEEEE
T ss_pred Ccccc------c--CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhc-------CCeEEEecCCCCEEEEEE
Confidence 00000 2 3357789988762 2478899999999888655543110 001111111233344433
Q ss_pred --cCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEee--CcEEEEEecC
Q 001361 471 --CGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCG--HSLTVALTTT 546 (1092)
Q Consensus 471 --cG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G--~~htlaLt~d 546 (1092)
.+..+.++++ ++|++|.+-..+.-.+|.+..-.. .+....+..|+.+... ....+++|++
T Consensus 123 ~~~~~~~ill~T------------~~G~~~r~~~~eip~~gR~a~Gv~----~i~L~~~d~vv~~~~~~~~~~ll~~T~~ 186 (276)
T 3no0_A 123 SSVDETHILLFT------------KKGRVARFSVREVPPSTPGARGVQ----GIKLEKNDETSGLRIWNGEPYLLVITAK 186 (276)
T ss_dssp ECCSSCEEEEEE------------TTSEEEEEEGGGSCBCCTTCCCEE----CCCCCTTCCEEEEEEESSCSEEEEEETT
T ss_pred EeCCCCEEEEEE------------CCCEEEEEEhhhCCCcCCCCCCEE----EEccCCCCEEEEEEEeCCCCEEEEEeCC
Confidence 2444555555 699999986555444433222111 1222234566665543 3467888999
Q ss_pred CcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEE--EcCCEEEEEEcCCeEEE--EeCC
Q 001361 547 GHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIA--CGDYHVAVLTSRTEVYT--WGKG 607 (1092)
Q Consensus 547 G~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia--~G~~HslaLT~dG~Vy~--WG~n 607 (1092)
|.+.-.--.++-..+.+.... ..+ ..+..++.+. .+....+++|++|++.- +-.+
T Consensus 187 G~~kr~~~~e~~~~~R~gkGv---~~i---~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 187 GRVKKISHEEIPKTNRGVKGT---EVS---GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SCEEEEEGGGSCCCCTTCCCE---ECC---CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred CcEEEeEHHHcccCCCCCcce---EEE---cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 988877655543322211100 000 1223344442 24567899999999988 6443
No 103
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=83.44 E-value=7.3 Score=35.76 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
.++-.++-.+|.+|++++..++.++.++..++++|..-..++-.+...|-.-+.+|+-++.-+
T Consensus 36 e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 36 EDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666889999999999999999998888887666555445555667888888866544
No 104
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=82.53 E-value=0.51 Score=46.93 Aligned_cols=50 Identities=28% Similarity=0.818 Sum_probs=38.9
Q ss_pred ccccCCCCCcCCccccc-ccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhh
Q 001361 657 DQSMCSGCRIPFNFKRK-RHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGK 715 (1092)
Q Consensus 657 d~s~C~~C~~~F~~~~k-rhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~ 715 (1092)
+...|..|..+|+|... .+.|..|...+|..|+... +..+.=+|..|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~---------~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH---------PEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECC---------SSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccccc---------CCCCcEeeHHHHHH
Confidence 46789999999997654 5559999999999998321 13457789999775
No 105
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=82.41 E-value=68 Score=35.89 Aligned_cols=226 Identities=8% Similarity=0.005 Sum_probs=128.8
Q ss_pred EEEEEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCccC
Q 001361 307 VQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNC 386 (1092)
Q Consensus 307 I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n~~ 386 (1092)
+..++..+...+.-..||.|..|-......+ ..+. .....|..++......+.-..||.|+.|-...
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~-~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~- 188 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL-----------RTLV-GHTGGVWSSQMRDNIIISGSTDRTLKVWNAET- 188 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEE-----------EECC-CCSSCEEEEEEETTEEEEEETTSCEEEEETTT-
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEE-----------EEEc-CCCCCEEEEEecCCEEEEEeCCCeEEEEECCc-
Confidence 4456656677777788999999975432111 1111 11235777776677777778899999996441
Q ss_pred CCCccCCCCCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCCeE
Q 001361 387 NFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRT 466 (1092)
Q Consensus 387 ~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I 466 (1092)
+. ....+.. ....|..++......+.-+.+|.|+.|-......+ ..+.. ....|
T Consensus 189 --~~----------~~~~~~~--h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-----------~~~~~-~~~~v 242 (445)
T 2ovr_B 189 --GE----------CIHTLYG--HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL-----------HVLMG-HVAAV 242 (445)
T ss_dssp --TE----------EEEEECC--CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEE-----------EEEEC-CSSCE
T ss_pred --Cc----------EEEEECC--CCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEE-----------EEEcC-CcccE
Confidence 10 0111211 23357777777778888889999999964321110 01111 12235
Q ss_pred EEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCcEEEEEecC
Q 001361 467 VRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTT 546 (1092)
Q Consensus 467 ~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLt~d 546 (1092)
..++......++-. .+|.|+.|-.... .....+. .....|..+.....+.+.-..+
T Consensus 243 ~~~~~~~~~l~~~~------------~dg~i~iwd~~~~-----------~~~~~~~-~~~~~v~~~~~~~~~l~~~~~d 298 (445)
T 2ovr_B 243 RCVQYDGRRVVSGA------------YDFMVKVWDPETE-----------TCLHTLQ-GHTNRVYSLQFDGIHVVSGSLD 298 (445)
T ss_dssp EEEEECSSCEEEEE------------TTSCEEEEEGGGT-----------EEEEEEC-CCSSCEEEEEECSSEEEEEETT
T ss_pred EEEEECCCEEEEEc------------CCCEEEEEECCCC-----------cEeEEec-CCCCceEEEEECCCEEEEEeCC
Confidence 55544333333322 5888999853211 0011111 1234577777767777777889
Q ss_pred CcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEEEcCCEEEEEEcCCeEEEEeCC
Q 001361 547 GHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKG 607 (1092)
Q Consensus 547 G~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG~Vy~WG~n 607 (1092)
|.|+.|-.... + ....+. .....+..++......+.-..+|.|+.|-..
T Consensus 299 ~~i~i~d~~~~-~---------~~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~ 347 (445)
T 2ovr_B 299 TSIRVWDVETG-N---------CIHTLT--GHQSLTSGMELKDNILVSGNADSTVKIWDIK 347 (445)
T ss_dssp SCEEEEETTTC-C---------EEEEEC--CCCSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred CeEEEEECCCC-C---------EEEEEc--CCcccEEEEEEeCCEEEEEeCCCeEEEEECC
Confidence 99999964321 1 111111 1223466777777777777889999999753
No 106
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=81.99 E-value=1.9 Score=34.94 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
..||..|+.|+..|+++++.+..+++.++++++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568888888888888888888888888888775
No 107
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=81.62 E-value=3.1 Score=33.37 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEA 900 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea 900 (1092)
|--.+|.++|..|+.+|-++|+||+|+.+-+++-
T Consensus 18 q~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 18 QMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3346788899999999999999999999988863
No 108
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=80.53 E-value=3.4 Score=32.44 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
-.+|...|..|...|..+++||+++++-++.
T Consensus 13 n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 13 NIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3566679999999999999999999987764
No 109
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=80.22 E-value=28 Score=38.18 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=13.2
Q ss_pred CCeEEEEEcCCcEEEeec
Q 001361 421 PWHTAVVTSAGQLFTFGD 438 (1092)
Q Consensus 421 ~~Ht~aLt~dG~Vy~wG~ 438 (1092)
..|++++ .+|+||.+|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 3577766 7899999993
No 110
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=80.02 E-value=7.1 Score=39.56 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=38.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhhhHHHHHHHHHHH
Q 001361 862 AKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL---AVAGEETAKCRAAKDVIKSLTAQ 924 (1092)
Q Consensus 862 l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~---~~a~ee~~k~~~ake~ik~l~~q 924 (1092)
|...=..|.+|+.|+..|+++++..+.||+.+++|++.+- ....+..+|-...-+||+.|-..
T Consensus 15 l~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~ 80 (190)
T 4emc_A 15 IDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEY 80 (190)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHH
Confidence 3333456888999999999999999999999998876532 22333444433334444444433
No 111
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=79.96 E-value=3 Score=30.48 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
|.|.+|...|+.|-.+-..++.|+.+++..+.+
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 458899999999999999999999999998887
No 112
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=79.30 E-value=12 Score=35.09 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=30.3
Q ss_pred CCCeEEEEEcC-ceeEEEeCCHHHHHHHHHHHHHHHH
Q 001361 88 EYQSFSLIYND-RSLDLICKDKDEAEVWFTGLKALIS 123 (1092)
Q Consensus 88 ~~~~FSiiy~~-rsLDLia~~~~e~~~Wv~gL~~Li~ 123 (1092)
...+|.|...+ +..-|.|+|++|++.|+..|+.-|.
T Consensus 87 rk~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 87 RKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp SSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 35799999855 6777999999999999999998763
No 113
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=79.09 E-value=2.4 Score=28.91 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001361 876 VEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 876 v~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
-+.|+++|..++.+||.+.||++
T Consensus 3 wealekkcaalesklqalekkle 25 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999986
No 114
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=78.99 E-value=10 Score=46.01 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=14.7
Q ss_pred CceEEEEEcCCeEEEEeC
Q 001361 314 GRHAALVTKQGEVFSWGE 331 (1092)
Q Consensus 314 ~~hs~~Lt~dG~Vy~wG~ 331 (1092)
..|++++..+|+||++|-
T Consensus 288 ~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 288 GYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp SSCEEEECTTSCEEEECC
T ss_pred cccceEEecCCeEEEEeC
Confidence 457777777999999996
No 115
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=76.77 E-value=95 Score=34.22 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=62.1
Q ss_pred CEEEEEec--CceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCC
Q 001361 306 DVQNIACG--GRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGG 383 (1092)
Q Consensus 306 ~I~~Ia~G--~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~ 383 (1092)
.|..|+.. ..+.++-..+|.|..|-...... ...+. .....|..++......+....+|.|+.|-.
T Consensus 136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~ 203 (401)
T 4aez_A 136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK-----------LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDV 203 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred CEEEEEECCCCCEEEEECCCCeEEEEECcCCeE-----------EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEec
Confidence 46666653 44556667799999996543211 11111 123467788877777777788999999964
Q ss_pred ccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCC--CeEEEEEcCCcEEEeecC
Q 001361 384 SNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGP--WHTAVVTSAGQLFTFGDG 439 (1092)
Q Consensus 384 n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~--~Ht~aLt~dG~Vy~wG~N 439 (1092)
. ..+. ....+.. ....|..++... .+.+.-+.+|.|+.|-..
T Consensus 204 ~--~~~~----------~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 204 R--IANH----------QIGTLQG--HSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp T--SSSC----------EEEEEEC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred c--cCcc----------eeeEEcC--CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 4 1110 0111111 123566666543 355555678999999643
No 116
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=76.50 E-value=12 Score=36.42 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMA 929 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~ 929 (1092)
..|..+++.++..|.++.+.++.||..++.++.++-.-..+--.+....++=|+.|..|++.+.
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888888888888888776543333323333446777777777777663
No 117
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=75.89 E-value=5.9 Score=46.49 Aligned_cols=74 Identities=14% Similarity=0.191 Sum_probs=44.3
Q ss_pred cchhhhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhhHHHHHHHHHHHH
Q 001361 856 KIVVDDAKRT------SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEET----AKCRAAKDVIKSLTAQL 925 (1092)
Q Consensus 856 ~~~~~~l~~~------~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~----~k~~~ake~ik~l~~ql 925 (1092)
+.+.+.|+++ +.+++.|-.+-..|..+.|.+..+.....|++..+.. ++||+ ++.+..|+-||.|.+++
T Consensus 16 ~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~-~~~~~~~l~~~~~~l~~~i~~le~~~ 94 (485)
T 3qne_A 16 EIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFK-AKEDAKDLIAEKEKLSNEKKEIIEKE 94 (485)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666 5777777777777777777777777777777765432 22322 22344555555555555
Q ss_pred HHHHh
Q 001361 926 KDMAE 930 (1092)
Q Consensus 926 k~~~e 930 (1092)
+++.+
T Consensus 95 ~~~~~ 99 (485)
T 3qne_A 95 AEADK 99 (485)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 118
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=75.22 E-value=1e+02 Score=33.90 Aligned_cols=107 Identities=10% Similarity=0.097 Sum_probs=64.7
Q ss_pred EEEEEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeC--CCeEEEEEeCCcEEEeCCc
Q 001361 307 VQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACG--EHHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 307 I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G--~~hs~aLT~dG~Vy~wG~n 384 (1092)
+..++-...+.++...+|.|+.|-....- ....+.......|..|+.. ..+.++-+.+|.|+.|-..
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 34455556777888899999999754321 1122222134457777654 3455555678999999644
Q ss_pred cCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecC
Q 001361 385 NCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDG 439 (1092)
Q Consensus 385 ~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N 439 (1092)
. + . ....+. .....|..++......+.-..+|.|+.|-..
T Consensus 165 ~---~-------~---~~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 165 S---Q-------T---KLRTMA--GHQARVGCLSWNRHVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp T---C-------C---EEEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred C---C-------e---EEEEec--CCCCceEEEEECCCEEEEEcCCCCEEEEecc
Confidence 1 0 0 111111 1234677888777777778889999999644
No 119
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=75.13 E-value=49 Score=35.25 Aligned_cols=17 Identities=29% Similarity=0.642 Sum_probs=12.6
Q ss_pred CeEEEEEeCCcEEEeCCc
Q 001361 367 HHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 367 ~hs~aLT~dG~Vy~wG~n 384 (1092)
.|++++ -+|.||.+|..
T Consensus 48 ~~~~~~-~~~~lyv~GG~ 64 (306)
T 3ii7_A 48 DAACVF-WDNVVYILGGS 64 (306)
T ss_dssp SCEEEE-ETTEEEEECCB
T ss_pred eeEEEE-ECCEEEEEeCC
Confidence 466555 48899999965
No 120
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=74.91 E-value=8.4 Score=45.50 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVA-----------GEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a-----------~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
+.+++.|-.+-..|..+.+.+..+..+..|++..+..-- .+--++.+..|+-||.|.++++++.++|
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677766777777777777777766666666543221 1112344556666777666655554443
No 121
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.89 E-value=14 Score=33.66 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 882 KSQLQEIELERTTRQ-LKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 882 ~~~~~~~ei~~~~~~-~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
.....+.||+.+... .+||-.|++++-..+-+++.=.+.|.+||+|.
T Consensus 48 ~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 48 EADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444555544433 35788888888777777777778888888774
No 122
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=74.11 E-value=7.4 Score=45.71 Aligned_cols=45 Identities=4% Similarity=0.103 Sum_probs=29.8
Q ss_pred hhhhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 858 VVDDAKRT------SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALA 902 (1092)
Q Consensus 858 ~~~~l~~~------~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~ 902 (1092)
+.+.++++ +.+|+.|-.+-..|..+.+.+..+...+.|++.+++.
T Consensus 22 v~~~~~~R~~~~~~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 22 IRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455555 5777777777777777777777777777776665444
No 123
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=73.50 E-value=8.9 Score=44.70 Aligned_cols=87 Identities=14% Similarity=0.206 Sum_probs=58.1
Q ss_pred CCCceeEeEEEeCCCCeEEEecCC---c-----cceEEccce--eecccCCCChhhhcCCCCCCCCCeEEEEEc--Ccee
Q 001361 34 RGKPKFCPFRLANDESILIWISGK---E-----EKHLKLSHV--SRIIPGQRTPIFQRYPRPEKEYQSFSLIYN--DRSL 101 (1092)
Q Consensus 34 ~~kp~~r~f~L~~d~~~l~W~~~k---~-----~~~i~l~~I--~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~--~rsL 101 (1092)
+++.+.|+|+|=.| .|+....+ . +..|+|+++ .++..|.... | ......+|.|+.. .+++
T Consensus 347 ~~~~~~r~~fLF~d--~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~-~-----~~~~~~~F~i~~~~~~~~~ 418 (466)
T 2pz1_A 347 QAKSQQRMFFLFDH--QLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRD-L-----HVSIKNAFRLHRGATGDSH 418 (466)
T ss_dssp TCCEEEEEEEEETT--EEEEEEECSSCTTCEEEEEEEETTTCEEEECCSBSCCS-S-----CCCBCEEEEEECSSSCCEE
T ss_pred CCCeeEEEEEEECC--EEEEEEeccccCCceEEeeeeeccceEEEeCCCCcccc-c-----ccccceeEEEEeCCCCeEE
Confidence 57889999999988 45554321 1 234666653 3444443210 0 0112368999885 3788
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHccccc
Q 001361 102 DLICKDKDEAEVWFTGLKALISRSHYR 128 (1092)
Q Consensus 102 DLia~~~~e~~~Wv~gL~~Li~~~~~~ 128 (1092)
-|.|.++++.+.|+..|+..+...+..
T Consensus 419 ~l~a~s~~eK~~W~~~i~~a~~~~~~~ 445 (466)
T 2pz1_A 419 LLCTRKPEQKQRWLKAFAREREQVQLD 445 (466)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998876543
No 124
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=73.49 E-value=7.6 Score=33.34 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=31.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 859 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 859 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
.+.|+++.+|+.+..+.+..|..+++++|.+|+.++.++..
T Consensus 25 q~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 25 QYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455557787777788888888888888888888887754
No 125
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=73.40 E-value=1e+02 Score=39.71 Aligned_cols=58 Identities=10% Similarity=0.227 Sum_probs=32.2
Q ss_pred CceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeC-CCeEEEEEeCCcEEEeCCc
Q 001361 314 GRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACG-EHHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 314 ~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G-~~hs~aLT~dG~Vy~wG~n 384 (1092)
+.+.+....||.|..|-......+ .+. .....|..++.. ....++...+|.|+.|-..
T Consensus 1015 g~~l~s~~~dg~i~vwd~~~~~~~------------~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 1015 GKTLISSSEDSVIQVWNWQTGDYV------------FLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp SSCEEEECSSSBEEEEETTTTEEE------------CCB-CCSSCEEEEEECSSSEEEEEESSSEEEEEETT
T ss_pred CCEEEEEcCCCEEEEEECCCCceE------------EEe-cCCCcEEEEEEcCCCcEEEEECCCcEEEEECC
Confidence 344555567899999975432111 011 112345555543 3345566778999999644
No 126
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=73.08 E-value=13 Score=36.16 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=34.1
Q ss_pred CCCCeEEEEEc------CceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 87 KEYQSFSLIYN------DRSLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 87 ~~~~~FSiiy~------~rsLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
....+|+|... .+++.|-|.+.+|++.|+..|+.-|+..+
T Consensus 80 ~~p~~~~l~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~e~~ 125 (140)
T 3qwm_A 80 YYPNGIRLTSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIAEVQ 125 (140)
T ss_dssp SCTTEEEEEECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 35789999983 17899999999999999999999987654
No 127
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=72.38 E-value=16 Score=39.12 Aligned_cols=68 Identities=13% Similarity=0.155 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCcc
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVGA 936 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~~ 936 (1092)
..|+..+-.+++.++...+..+.++...+..++++-.-..++.+. .++-+..|..+.++++..+|++.
T Consensus 110 E~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e---~~~e~~~l~~~r~~l~~~i~~~l 177 (256)
T 3na7_A 110 NREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKN---IKETQQIIFKKKEDLVEKTEPKI 177 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCHHH
Confidence 333344444444444444444444444444444433333333333 33446667778888999999986
No 128
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=72.14 E-value=99 Score=32.27 Aligned_cols=270 Identities=9% Similarity=-0.003 Sum_probs=127.4
Q ss_pred cccCCCCcEEEEcCCCCCcccCCCCCcCCccccccccccceEEecccCCCCEEEEEecC-ceEEEEEcCCeEEEEeCCCC
Q 001361 256 DDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGG-RHAALVTKQGEVFSWGEELG 334 (1092)
Q Consensus 256 ~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~-~hs~~Lt~dG~Vy~wG~N~~ 334 (1092)
.++..+|.+++++... ...+..... ........+. ....|..++... ...++...+|.|..|-....
T Consensus 15 ~~~s~dg~~~~~~~~~-~~~~~~~~~---------~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~ 82 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPP-DALIGPGIP---------RHARQINTLN--HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHP 82 (337)
T ss_dssp EEECSSSCEEECCCCT-TSSSSTTCC---------SEEEEEEEEC--CSSCCCEEEECSSSSEEEEECBSEEEEEETTST
T ss_pred EEECCCCCEEEeecCC-CcEeccccC---------Cccccceecc--CCCceEEEEEecCCcEEEEcCCCeEEEEECCCC
Confidence 4577889999888765 333222211 0011111111 223455555432 22333444899999975443
Q ss_pred CccCCCCCCCCCcceEeec-cCCCcEEEEEeCC--CeEEEEEeCCcEEEeCCccCCCCccCCCCCcceecceeecCCCCC
Q 001361 335 GRLGHGVDSDVSHPKLIDA-LKNINVELVACGE--HHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEG 411 (1092)
Q Consensus 335 GqLG~g~~~~~~~P~~V~~-l~~~~I~~Ia~G~--~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~ 411 (1092)
... .....+.. -....|..++... ...++...+|.|+.|-... + . .. ....+.. ..
T Consensus 83 ~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---~-----~--~~-~~~~~~~--~~ 141 (337)
T 1gxr_A 83 GNK--------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA---P-----T--PR-IKAELTS--SA 141 (337)
T ss_dssp TCC--------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC---C---------E-EEEEEEC--SS
T ss_pred Cce--------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC---C-----C--cc-eeeeccc--CC
Confidence 211 11111111 1234566666543 3445556789999995441 0 0 00 0011111 12
Q ss_pred CcEEEEEeCC--CeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCCeEEEEecCCce-EEEEEEeeecCCC
Q 001361 412 IHVSSVSCGP--WHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWH-TAAVVEVMVGSSS 488 (1092)
Q Consensus 412 ~~I~~IscG~--~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~h-t~aLte~~~~~s~ 488 (1092)
..|..++... .+.+..+.+|.|+.|-...... ...+.. ....|..++..... .++..
T Consensus 142 ~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-----------~~~~~~-~~~~i~~~~~~~~~~~l~~~-------- 201 (337)
T 1gxr_A 142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-----------VRQFQG-HTDGASCIDISNDGTKLWTG-------- 201 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------EEEECC-CSSCEEEEEECTTSSEEEEE--------
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce-----------eeeeec-ccCceEEEEECCCCCEEEEE--------
Confidence 3466665543 3556666789999996432110 111111 12245555443222 22222
Q ss_pred CccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEee--CcEEEEEecCCcEEEEeCCCCCCCCCCCCC
Q 001361 489 SSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCG--HSLTVALTTTGHVYTMGSPVYGQLGDPKAN 566 (1092)
Q Consensus 489 ~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G--~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~ 566 (1092)
..+|.|+.|-..... ....+. ....+..++.. ....++-..+|.|+.|-....
T Consensus 202 ---~~dg~i~~~d~~~~~-----------~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~--------- 256 (337)
T 1gxr_A 202 ---GLDNTVRSWDLREGR-----------QLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP--------- 256 (337)
T ss_dssp ---ETTSEEEEEETTTTE-----------EEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS---------
T ss_pred ---ecCCcEEEEECCCCc-----------eEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---------
Confidence 158899999543211 011111 12345444432 334455566788888864321
Q ss_pred CccceeeccccCCCCEEEEEEcC--CEEEEEEcCCeEEEEeCC
Q 001361 567 GKLPTRVEGKLTKNFVEEIACGD--YHVAVLTSRTEVYTWGKG 607 (1092)
Q Consensus 567 ~~~P~~v~~~l~~~~I~~Ia~G~--~HslaLT~dG~Vy~WG~n 607 (1092)
....+. .....|..++... ...+.-..+|.|+.|-..
T Consensus 257 --~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 257 --DKYQLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp --CEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred --CeEEEc--CCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 011111 2234577777653 345555678999999754
No 129
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=70.94 E-value=10 Score=36.73 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCC
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLP 933 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp 933 (1092)
.+.+.-+++++++-.+.-|++..|.+.+-...++|+.+...-.-|.+.|++.+++|+..|...--||-
T Consensus 26 ~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~ 93 (158)
T 3tul_A 26 ESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQ 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHh
Confidence 34444555577777788888899999999999999999999999999999999999999988876664
No 130
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.41 E-value=11 Score=34.23 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
+..+||.++..|..+....+.|+.++...+.+
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~e 37 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAK 37 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45566666666766666677777766666553
No 131
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=70.36 E-value=13 Score=34.12 Aligned_cols=64 Identities=25% Similarity=0.255 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE-----------------ALAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e-----------------a~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
++++.+|+.+|++|++.++.+..+++.+.-+++- ++.-|++-- +.+++.|..|.+++..+
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~---~~~~~~~e~Lq~E~erL 87 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVAR---QRLREDHSQLQAECERL 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHH---HHHHHHHHHHHHHHHHH
Confidence 6777777777777777777777777777777764 122222211 12457777788766666
Q ss_pred HhhC
Q 001361 929 AEML 932 (1092)
Q Consensus 929 ~e~l 932 (1092)
-++|
T Consensus 88 r~~v 91 (100)
T 1go4_E 88 RGLL 91 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 132
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=70.26 E-value=8.5 Score=39.29 Aligned_cols=97 Identities=20% Similarity=0.339 Sum_probs=58.7
Q ss_pred HHhcCCeEEEEecCCCceeEeEEEeCCCCeEEEecCCccceEEccceeecccCCCChhhhcC----CCCCCCCCeEEEEE
Q 001361 21 ALKKGAHLLKYGRRGKPKFCPFRLANDESILIWISGKEEKHLKLSHVSRIIPGQRTPIFQRY----PRPEKEYQSFSLIY 96 (1092)
Q Consensus 21 ~L~~Gt~l~K~~~~~kp~~r~f~L~~d~~~l~W~~~k~~~~i~l~~I~eVr~G~~t~~f~~~----~~~~~~~~~FSiiy 96 (1092)
.+.+|...+|..+ |+.+.+++.|=.| .|+-...+..+ ..+.+. +..++++.-. .....+...|-||.
T Consensus 71 Ll~eG~L~~k~~~-~~~~d~~~fLf~D--~Ll~~~~~~~k-y~~~~~-----~~~~pvi~L~~~~vre~a~d~~~~fli~ 141 (185)
T 2lg1_A 71 LVRDGSVFLKNAA-GRLKEVQAVLLTD--ILVFLQEKDQK-YIFASL-----DQKSTVISLKKLIVREVAHEEKGLFLIS 141 (185)
T ss_dssp EEEEEEEEEECTT-CCEEEEEEEEESS--EEECCEEETTE-EECCCC-----SSSCSEEESSSCEEECCSSCSSEEEEEC
T ss_pred eeeeceEEEeccC-CCeeeEEEEeecC--EEEEEEecCCE-EEEEcc-----cCCCCeEeecceEEeccCCCCCeEEEEE
Confidence 3456666666544 4678888888777 34443322222 222211 1122222111 11122457888998
Q ss_pred c----CceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 97 N----DRSLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 97 ~----~rsLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
. .+.+.|.|.++++++.|+..|+.-+...+
T Consensus 142 ~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~~~ 175 (185)
T 2lg1_A 142 MGMTDPEMVEVHASSKEERNSWIQIIQDTINTLN 175 (185)
T ss_dssp CSSSCCCCEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhCC
Confidence 4 38999999999999999999998887654
No 133
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=70.24 E-value=12 Score=41.91 Aligned_cols=37 Identities=14% Similarity=0.395 Sum_probs=31.6
Q ss_pred CCCeEEEEEc-----CceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 88 EYQSFSLIYN-----DRSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 88 ~~~~FSiiy~-----~rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
+..+|-|++. .+++-|.|.|+++.+.|+..|+..+..
T Consensus 326 ~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 367 (368)
T 1xcg_A 326 DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN 367 (368)
T ss_dssp CSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 4578988873 278999999999999999999988864
No 134
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=69.77 E-value=26 Score=33.12 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=52.0
Q ss_pred eeEeEEEeCC-------CCeEEEecCCccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEE-c--C---ceeEEE
Q 001361 38 KFCPFRLAND-------ESILIWISGKEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIY-N--D---RSLDLI 104 (1092)
Q Consensus 38 ~~r~f~L~~d-------~~~l~W~~~k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy-~--~---rsLDLi 104 (1092)
+.|.|-+|.| +....|....+..++.+++|..+..-.+. ...|=||. . . +.-||.
T Consensus 28 ~ER~L~IDGdYIHImP~~~~~~~~~~~KTtS~H~s~Vv~~K~s~k~------------P~~FKivV~k~~~~e~KrYdfE 95 (121)
T 3ulb_A 28 HERTLAIDGDYIYIVPPEGRIHWHDNVKTKSLHISQVVLVKKSKRV------------PEHFKIFVRREGQDDIKRYYFE 95 (121)
T ss_dssp EEEEEEEETTEEEEECCC-------CCCCEEEEGGGEEEEEECSSC------------TTEEEEEECCTTCSSCEEEEEE
T ss_pred ccEEEEEcCceEEEecCCCCcccccCCcEEEEEEeeEEEEEecccC------------CCcEEEEEEccCCCCcceeEEE
Confidence 6677777755 22334555556778999999887765433 24555666 3 2 889999
Q ss_pred eCCHHHHHHHHHHHHHHHHc
Q 001361 105 CKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 105 a~~~~e~~~Wv~gL~~Li~~ 124 (1092)
|.+++||..-|.-|+.+|+.
T Consensus 96 A~s~~ea~EIV~~ik~~~~~ 115 (121)
T 3ulb_A 96 AVSGQECTEIVTRLQNLLSA 115 (121)
T ss_dssp ESSHHHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999975
No 135
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=69.68 E-value=20 Score=33.40 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTR----KSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKS 920 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~----~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~ 920 (1092)
|+=|..|++-.+..+- +.+.++-||..+.++|++| .+|.++.++..++++.
T Consensus 52 NqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a----~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 52 NHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDA----SAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhchhhhh
Confidence 5666666653333333 3777788888888888883 4566665555555443
No 136
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=69.05 E-value=8.1 Score=43.56 Aligned_cols=41 Identities=10% Similarity=0.284 Sum_probs=34.0
Q ss_pred CCCCCeEEEEEcC----ceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 86 EKEYQSFSLIYND----RSLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 86 ~~~~~~FSiiy~~----rsLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
..+..+|-+++.. +..-|.|.+++|.+.|+..|+..+...+
T Consensus 330 ~~~~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~~k 374 (377)
T 3p6a_A 330 ATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLK 374 (377)
T ss_dssp TTCTTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHTCC
T ss_pred ccccceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence 4455788888852 7889999999999999999999998654
No 137
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=68.86 E-value=8.9 Score=46.22 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=57.2
Q ss_pred CCeEEEEecCCCceeEeEEEeCCCCeEEEecCCc-----cceEEcccee--ecccCCCChhhhcCCCCCCCCCeEEEEEc
Q 001361 25 GAHLLKYGRRGKPKFCPFRLANDESILIWISGKE-----EKHLKLSHVS--RIIPGQRTPIFQRYPRPEKEYQSFSLIYN 97 (1092)
Q Consensus 25 Gt~l~K~~~~~kp~~r~f~L~~d~~~l~W~~~k~-----~~~i~l~~I~--eVr~G~~t~~f~~~~~~~~~~~~FSiiy~ 97 (1092)
|...++...+++.+.|+++|=.| .|+....+. +..|+|+++. ++..|.. .......+|-|+..
T Consensus 410 G~l~~~~~~~~~~~~r~~fLF~d--~Ll~~k~~~~~y~~k~~i~L~~~~v~~~~~~~~--------~~~~~~~~f~i~~~ 479 (587)
T 3ky9_A 410 GELKITSVERRSKMDRYAFLLDK--ALLICKRRGDSYDLKDFVNLHSFQVRDDSSGDR--------DNKKWSHMFLLIED 479 (587)
T ss_dssp EEEEEECSSCCSCEEEEEEEETT--EEEEEEEETTEEEEEEEEEGGGEEEEEC-------------CCCTTCEEEEEEET
T ss_pred eeEEEEeccCCCcceEEEEEECC--EEEEEEecCCEEEeeeeechhhceeeecCCCCc--------ccccccceeEEEEc
Confidence 44433334567788999999888 444443222 2335665542 2222210 11223468999985
Q ss_pred C--ceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 98 D--RSLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 98 ~--rsLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
. +++-|.|.+++|.+.|+..|+..+...+
T Consensus 480 ~~~~~~~L~A~S~eeK~~Wi~~I~~ai~~~~ 510 (587)
T 3ky9_A 480 QGAQGYELFFKTRELKKKWMEQFEMAISNIY 510 (587)
T ss_dssp TC---CEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhhhhc
Confidence 4 8999999999999999999999997654
No 138
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=68.53 E-value=17 Score=41.67 Aligned_cols=41 Identities=15% Similarity=0.407 Sum_probs=34.5
Q ss_pred CCCCeEEEEEcC-----ceeEEEeCCHHHHHHHHHHHHHHHHcccc
Q 001361 87 KEYQSFSLIYND-----RSLDLICKDKDEAEVWFTGLKALISRSHY 127 (1092)
Q Consensus 87 ~~~~~FSiiy~~-----rsLDLia~~~~e~~~Wv~gL~~Li~~~~~ 127 (1092)
.+...|-|++.. ++.-|.|.+++|.+.|+..|+..++.+..
T Consensus 367 ~~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~~~~ 412 (418)
T 3t06_A 367 TDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNAHH 412 (418)
T ss_dssp SCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHTC--
T ss_pred ccCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcCcc
Confidence 456799999942 78999999999999999999999987654
No 139
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.14 E-value=44 Score=31.91 Aligned_cols=90 Identities=19% Similarity=0.296 Sum_probs=57.9
Q ss_pred eEEEEecCCC-ceeEeEEEeCCCCeEEEe-c---CCccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCcee
Q 001361 27 HLLKYGRRGK-PKFCPFRLANDESILIWI-S---GKEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDRSL 101 (1092)
Q Consensus 27 ~l~K~~~~~k-p~~r~f~L~~d~~~l~W~-~---~k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~rsL 101 (1092)
+|+++..+-+ .|++|++||.. .|.-+ + .|--|.|+|++|..|.+-.+..... ....+.||=|+..+.+.
T Consensus 13 WmVH~t~~d~~rKRHYWrLD~K--~Itlf~~e~~~k~ykeIpLseIL~v~~~~~~~~~~----~~~~phcFEi~T~~~~y 86 (129)
T 2d9z_A 13 WMVHYTSRDNLRKRHYWRLDSK--CLTLFQNESGSKYYKEIPLSEILRISSPRDFTNIS----QGSNPHCFEIITDTMVY 86 (129)
T ss_dssp EEEEEESSCCCCEEEEEEEESS--CEEEESCSSCCSCCCEECTTTCCEECCTTCCCCSS----SCSCCCSEEEECSSCEE
T ss_pred eEEEEccCCccccceeeEecCC--eEEEEecCCCCceeceeeHHHhcccccccCccccC----CCCCCceEEEEECCEEE
Confidence 5667866644 56777778875 45443 3 3445669999999998876654221 12234899998744322
Q ss_pred EEEeCC----------------HHHHHHHHHHHHHHHH
Q 001361 102 DLICKD----------------KDEAEVWFTGLKALIS 123 (1092)
Q Consensus 102 DLia~~----------------~~e~~~Wv~gL~~Li~ 123 (1092)
+|.++ .+.++.|..+++.-+.
T Consensus 87 -~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALm 123 (129)
T 2d9z_A 87 -FVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALM 123 (129)
T ss_dssp -EECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHH
T ss_pred -EEccCCCCCCCCccccccccchHHHHHHHHHHHHhcc
Confidence 23332 5899999999976553
No 140
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=67.88 E-value=1.2e+02 Score=31.37 Aligned_cols=186 Identities=12% Similarity=0.043 Sum_probs=97.5
Q ss_pred CCEEEEEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEe---CCCeEEEEEeCCcEEEe
Q 001361 305 LDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVAC---GEHHTCAVTLSGDMYTW 381 (1092)
Q Consensus 305 ~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~---G~~hs~aLT~dG~Vy~w 381 (1092)
..|..|+......+....+|.|+.|-. + .+..........|..+.. .....+....+|.|+.|
T Consensus 105 ~~i~~~~~~~~~l~~~~~d~~i~~~d~---~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWDKTAKVWKE---G-----------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEET---T-----------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCEEEEEecCCEEEEEeCCCCEEEEcC---C-----------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 467778777777888889999999951 1 111111112334555544 45666777788999999
Q ss_pred CCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCC-CeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeec
Q 001361 382 GGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGP-WHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDS 460 (1092)
Q Consensus 382 G~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~-~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~ 460 (1092)
-.. . ....+.. .....|..++... ...++...+|.|+.|-...... ...+..
T Consensus 171 d~~------------~---~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~-----------~~~~~~ 223 (313)
T 3odt_A 171 QND------------K---VIKTFSG-IHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDV-----------LRTYEG 223 (313)
T ss_dssp ETT------------E---EEEEECS-SCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCE-----------EEEEEC
T ss_pred ecC------------c---eEEEEec-cCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhh-----------hhhhhc
Confidence 422 0 0011111 1223455554432 2356667889999996432111 011111
Q ss_pred CCCCeEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCc-E
Q 001361 461 LKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHS-L 539 (1092)
Q Consensus 461 l~~~~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~-h 539 (1092)
....|..++......++.. ..+|.|+.|-.... .+..........|..++...+ .
T Consensus 224 -~~~~i~~~~~~~~~~l~~~-----------~~dg~v~iwd~~~~------------~~~~~~~~~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 224 -HESFVYCIKLLPNGDIVSC-----------GEDRTVRIWSKENG------------SLKQVITLPAISIWSVDCMSNGD 279 (313)
T ss_dssp -CSSCEEEEEECTTSCEEEE-----------ETTSEEEEECTTTC------------CEEEEEECSSSCEEEEEECTTSC
T ss_pred -CCceEEEEEEecCCCEEEE-----------ecCCEEEEEECCCC------------ceeEEEeccCceEEEEEEccCCC
Confidence 1224555554433223322 16899999954321 011111122345666655332 3
Q ss_pred EEEEecCCcEEEEeCC
Q 001361 540 TVALTTTGHVYTMGSP 555 (1092)
Q Consensus 540 tlaLt~dG~Vy~wG~N 555 (1092)
.++-..+|.|+.|--.
T Consensus 280 ~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 280 IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEEETTSCEEEEESC
T ss_pred EEEEeCCCcEEEEeCC
Confidence 5566788999999654
No 141
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=67.85 E-value=15 Score=32.75 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSL 921 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l 921 (1092)
||..||.|+..|+..-..++.||..++--+++--.--.+|.+++..|.--|..|
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~L 54 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSF 54 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888777777777777766666665555566777776665444443
No 142
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=67.43 E-value=20 Score=42.66 Aligned_cols=41 Identities=10% Similarity=0.323 Sum_probs=34.7
Q ss_pred CCCCCeEEEEEc----CceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 86 EKEYQSFSLIYN----DRSLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 86 ~~~~~~FSiiy~----~rsLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
..+..+|-||+. .++.-|.|.+++|.+.|+..|+..|....
T Consensus 483 ~~d~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~~ 527 (536)
T 3odw_A 483 ATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLK 527 (536)
T ss_dssp TTCTTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHTSC
T ss_pred cccCCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhCC
Confidence 345678888884 27899999999999999999999998754
No 143
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=66.83 E-value=14 Score=39.61 Aligned_cols=87 Identities=14% Similarity=0.077 Sum_probs=53.1
Q ss_pred cCCCceeEeEEEeCCCCeEEEecC---Cccce----EEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC------c
Q 001361 33 RRGKPKFCPFRLANDESILIWISG---KEEKH----LKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND------R 99 (1092)
Q Consensus 33 ~~~kp~~r~f~L~~d~~~l~W~~~---k~~~~----i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~------r 99 (1092)
++++=+.|+|.|..+ .|.+... ++.+. ++|++. .|..|... ++. -..+-+.||.|.... .
T Consensus 144 ~~K~WkkRyfvLr~s--gLy~~~k~~sk~~r~l~~~~~L~~~-~vy~~~~~---kKk-~kaPt~~~F~ik~~k~~~~~~~ 216 (256)
T 3hk0_A 144 GKKSWKKLYVCLRRS--GLYCSTKGTSAAPRHLQLLADLEDS-NIFSLIAG---RKQ-YNAPTDHGLCIKPNKVRNETKE 216 (256)
T ss_dssp TSSCEEEEEEEEETT--EEEEESSTTCCCGGGEEEEECCTTE-EEEEESST---HHH-HCCSSSEEEEEEETTCSSCCTT
T ss_pred CCCcceEEEEEEeCC--EEEEEecCCCCccccceEEEEcCCC-EEEEeccc---ccc-cCCCCCCEEEEEcccccCCCce
Confidence 344558889999965 5666552 22333 366543 23333321 111 123445799998733 2
Q ss_pred eeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 100 SLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 100 sLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
.--|.|+|+++++.|+++|+...-..|
T Consensus 217 ~~~lcaede~~~~~W~~aIr~ak~g~~ 243 (256)
T 3hk0_A 217 LRLLCAEDEQTRTSWMTAFRLLKYGML 243 (256)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHTHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhHH
Confidence 366889999999999999998765443
No 144
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.79 E-value=27 Score=33.33 Aligned_cols=96 Identities=19% Similarity=0.180 Sum_probs=61.0
Q ss_pred HhcCCeEEEEe-cCCC-ceeEeEEEeCCC----CeE-EEecC-------CccceEEccceeecccCCCChhhhcCCCCCC
Q 001361 22 LKKGAHLLKYG-RRGK-PKFCPFRLANDE----SIL-IWISG-------KEEKHLKLSHVSRIIPGQRTPIFQRYPRPEK 87 (1092)
Q Consensus 22 L~~Gt~l~K~~-~~~k-p~~r~f~L~~d~----~~l-~W~~~-------k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~ 87 (1092)
+++|-.++--- +-|| =+.|+|.|-++. .+| .|... ...+.|.|+|=..|.+.... ....+
T Consensus 13 vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e------~~~pk 86 (127)
T 2d9w_A 13 VKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGE------ASSPR 86 (127)
T ss_dssp SEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSC------SSSCS
T ss_pred ccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccCCCCceEEEhhhCCeEecccCc------cCCCC
Confidence 35566555331 2222 345566775432 345 44432 23567899988777765332 11224
Q ss_pred CCCeEEEEEcCceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 88 EYQSFSLIYNDRSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 88 ~~~~FSiiy~~rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
+..+|.|...+|+.-|.|++ +|.+.|+..|-.|.-.
T Consensus 87 ~~~aF~l~T~er~~~laAe~-~E~~~Wi~~ic~~aF~ 122 (127)
T 2d9w_A 87 DTSAFFLETKERLYLLAAPA-AERGDWVQAICLLAFS 122 (127)
T ss_dssp SCEEEEEEESSCEEEEEECH-HHHHHHHHHHHHHHTS
T ss_pred cceEEEEEeCCcEEEEEeCc-HHHHHHHHHHHHHhcC
Confidence 55799999999999999996 5899999999877643
No 145
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=65.77 E-value=21 Score=31.22 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGE 906 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~e 906 (1092)
.++..++-.+|.+|+++..+++.+++++..++.+|..--.+
T Consensus 33 e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 33 EERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556677788888888888888887777776655433
No 146
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=65.00 E-value=2.3 Score=51.38 Aligned_cols=48 Identities=13% Similarity=0.309 Sum_probs=37.4
Q ss_pred ecCCcceeeeeeccccccccccCCCCCcCC-cccccccccccccceEEeccCCC
Q 001361 639 CGTSFTAAICLHKWVSGVDQSMCSGCRIPF-NFKRKRHNCYNCGLVYCHTCSSK 691 (1092)
Q Consensus 639 cG~~~T~al~~~kwvs~~d~s~C~~C~~~F-~~~~krhhC~~CG~v~C~~Css~ 691 (1092)
.+..|.+... +......|..|+..+ ++.++.++|..||.++|..|...
T Consensus 515 ~~~~H~F~~~-----~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 515 TANGHDFQMF-----SFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR 563 (587)
T ss_dssp TGGGCCEEEE-----CCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred cccCCceeEE-----eCCCCcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence 3445665433 446678899998876 89999999999999999999754
No 147
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=64.85 E-value=7.9 Score=28.32 Aligned_cols=33 Identities=33% Similarity=0.371 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
|+|.+|...|+.|-.+-..++.|+.++++-+.+
T Consensus 1 eRMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 1 XEVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 568899999999999999999999999988776
No 148
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=64.73 E-value=16 Score=42.25 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=40.0
Q ss_pred chhhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhhHHHHHHHHHHHHHH
Q 001361 857 IVVDDAKRT-----SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEE----TAKCRAAKDVIKSLTAQLKD 927 (1092)
Q Consensus 857 ~~~~~l~~~-----~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee----~~k~~~ake~ik~l~~qlk~ 927 (1092)
.+.+.|+++ +.+++.|-.+-..|..+.+.+..+..+..|++.. -++|| -++.+..|+-||.|.+++++
T Consensus 13 ~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 89 (421)
T 1ses_A 13 VFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPK---APPEEKEALIARGKALGEEAKRLEEALRE 89 (421)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555 5777777777777777777777777777766542 11111 12333445555555555554
Q ss_pred HHh
Q 001361 928 MAE 930 (1092)
Q Consensus 928 ~~e 930 (1092)
+.+
T Consensus 90 ~~~ 92 (421)
T 1ses_A 90 KEA 92 (421)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 149
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=64.72 E-value=16 Score=41.79 Aligned_cols=86 Identities=13% Similarity=0.191 Sum_probs=57.1
Q ss_pred CCCceeEeEEEeCCCCeEEEecCC---c-----cceEEccce--eecccCCCChhhhcCCCCCCCCCeEEEEEc--Ccee
Q 001361 34 RGKPKFCPFRLANDESILIWISGK---E-----EKHLKLSHV--SRIIPGQRTPIFQRYPRPEKEYQSFSLIYN--DRSL 101 (1092)
Q Consensus 34 ~~kp~~r~f~L~~d~~~l~W~~~k---~-----~~~i~l~~I--~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~--~rsL 101 (1092)
+|+.+.|+|+|=.| .|+....+ . +..|+|+++ .++..|.... | ......+|.|++. .+++
T Consensus 270 ~~k~~~r~~fLF~d--~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~-~-----~~~~~~~F~i~~~~~~~~~ 341 (402)
T 2dfk_A 270 YGRNQQRVFFLFDH--QMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDD-F-----NVSMKNAFKLHNKETEEVH 341 (402)
T ss_dssp TCCCEEEEEEEETT--EEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSS-S-----CCEESSEEEEEESSSSCEE
T ss_pred CCceEEEEEEeeCC--EEEEEEeccccCCceEEeeeeeccceEEEecCCCCccc-c-----ccccceeEEEEECCCCeEE
Confidence 57889999999988 45554321 1 224666654 3333332210 0 1122468999985 3788
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHcccc
Q 001361 102 DLICKDKDEAEVWFTGLKALISRSHY 127 (1092)
Q Consensus 102 DLia~~~~e~~~Wv~gL~~Li~~~~~ 127 (1092)
-|.|.++++.+.|+..|+..+...+.
T Consensus 342 ~l~a~s~~eK~~Wi~~i~~a~~~~~~ 367 (402)
T 2dfk_A 342 LFFAKKLEEKIRWLRAFREERKMVQE 367 (402)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988877654
No 150
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=64.70 E-value=13 Score=33.27 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
.|||+++.+|++.|-.+.-.+|-||.+++|-++
T Consensus 75 hkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 75 HKEMKQIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 778888888888888888888888888777654
No 151
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=64.12 E-value=13 Score=42.32 Aligned_cols=83 Identities=18% Similarity=0.222 Sum_probs=53.3
Q ss_pred CCCceeEeEEEeCCCCeEEEecCCcc-----ceEEcccee--ecccCCCChhhhcCCCCCCCCCeEEEEEc--CceeEEE
Q 001361 34 RGKPKFCPFRLANDESILIWISGKEE-----KHLKLSHVS--RIIPGQRTPIFQRYPRPEKEYQSFSLIYN--DRSLDLI 104 (1092)
Q Consensus 34 ~~kp~~r~f~L~~d~~~l~W~~~k~~-----~~i~l~~I~--eVr~G~~t~~f~~~~~~~~~~~~FSiiy~--~rsLDLi 104 (1092)
+++.+.|+++|=.| .|+....+.. ..|+|.++. ++-.|.. .......+|.|+.. .+++-|.
T Consensus 247 ~~~~~~~~~fLF~d--~Ll~~k~k~~~y~~k~~i~l~~~~v~~~~~~~~--------~~~~~~~~F~i~~~~~~~~~~l~ 316 (406)
T 2vrw_B 247 RRSKTDRYAFLLDK--ALLICKRRGDSYDLKASVNLHSFQVRDDSSGER--------DNKKWSHMFLLIEDQGAQGYELF 316 (406)
T ss_dssp CCSCEEEEEEEESS--EEEEEEEETTEEEEEEEEETTTEEEEC----------------CTTCEEEEEEETTCSCEEEEE
T ss_pred CCccceEEEEecCC--EEEEEEecCCceEEEEEecccceeeeecCCCCc--------cCCccceeeEEEecCCCceEEEe
Confidence 44568889999887 4555543322 235555442 2211110 01123478999984 4889999
Q ss_pred eCCHHHHHHHHHHHHHHHHccc
Q 001361 105 CKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 105 a~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
|+++++.+.|+..|+..+...+
T Consensus 317 a~s~~ek~~W~~~i~~ai~~~~ 338 (406)
T 2vrw_B 317 FKTRELKKKWMEQFEMAISNIY 338 (406)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999998755
No 152
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=63.28 E-value=21 Score=39.89 Aligned_cols=40 Identities=10% Similarity=0.337 Sum_probs=34.0
Q ss_pred CCCeEEEEEcC--ceeEEEeCCHHHHHHHHHHHHHHHHcccc
Q 001361 88 EYQSFSLIYND--RSLDLICKDKDEAEVWFTGLKALISRSHY 127 (1092)
Q Consensus 88 ~~~~FSiiy~~--rsLDLia~~~~e~~~Wv~gL~~Li~~~~~ 127 (1092)
+..+|.|.+.+ +++-|.|.|+++.+.|+..|+.+|...+.
T Consensus 288 ~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~ 329 (353)
T 1kz7_A 288 DTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQ 329 (353)
T ss_dssp BTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 35789999943 78999999999999999999998876543
No 153
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=63.07 E-value=1.6e+02 Score=31.14 Aligned_cols=17 Identities=35% Similarity=0.600 Sum_probs=12.2
Q ss_pred CeEEEEEeCCcEEEeCCc
Q 001361 367 HHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 367 ~hs~aLT~dG~Vy~wG~n 384 (1092)
.|++++ -+|+||.+|..
T Consensus 94 ~~~~~~-~~~~iyv~GG~ 110 (306)
T 3ii7_A 94 SLAACA-AEGKIYTSGGS 110 (306)
T ss_dssp SCEEEE-ETTEEEEECCB
T ss_pred ceeEEE-ECCEEEEECCC
Confidence 455554 48999999965
No 154
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=62.95 E-value=48 Score=31.57 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=31.9
Q ss_pred CCCeEEEEEc--CceeEEEeCCHHHHHHHHHHHHHHHHcc
Q 001361 88 EYQSFSLIYN--DRSLDLICKDKDEAEVWFTGLKALISRS 125 (1092)
Q Consensus 88 ~~~~FSiiy~--~rsLDLia~~~~e~~~Wv~gL~~Li~~~ 125 (1092)
...||-|... +..-=|-|.++++++.|+..|+.-+...
T Consensus 75 ~~~~F~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~~ 114 (126)
T 2dtc_A 75 HPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSS 114 (126)
T ss_dssp STTEEEEECTTSCSEEEEECSSHHHHHHHHHHHHHHHTSC
T ss_pred CCCEEEEeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHhcC
Confidence 4679999864 3667899999999999999999988653
No 155
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=62.82 E-value=22 Score=41.52 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhhHHHHHHHHHHHHHHHHhh
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEE----TAKCRAAKDVIKSLTAQLKDMAEM 931 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee----~~k~~~ake~ik~l~~qlk~~~e~ 931 (1092)
.+++.|-.+-..|..+.+.+..+.....|++..+.. .+|| -++.+..|+-||.|.++++++.++
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRK-KGEPVDELLAKSREIVKRIGELENEVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555543211 1111 233344555555555555554433
No 156
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.79 E-value=32 Score=41.14 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=19.3
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHhhCCCc
Q 001361 906 EETAKCRAAKDVIKSLTAQLKDMAEMLPVG 935 (1092)
Q Consensus 906 ee~~k~~~ake~ik~l~~qlk~~~e~lp~~ 935 (1092)
++-++-+..|+-+-.++.+||++-++++.-
T Consensus 555 ~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 555 NKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333444445566667778999999998864
No 157
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.66 E-value=37 Score=32.42 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 870 IKLRAQVEELTRKSQLQEIELERTT 894 (1092)
Q Consensus 870 ~~l~~qv~~L~~~~~~~~~ei~~~~ 894 (1092)
..|+.++.+|+.+...++..|..+.
T Consensus 46 q~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333444444444444444443333
No 158
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=62.63 E-value=45 Score=31.40 Aligned_cols=56 Identities=18% Similarity=0.130 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKS-------QLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~-------~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
|+.+++..++.++.|+ ...+.+|..++|.+.+|...=.+==+|..+.+|-|..|..
T Consensus 42 eldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 42 ERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555543 3455666777777766554444433455666665555543
No 159
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=62.62 E-value=1.6e+02 Score=31.08 Aligned_cols=112 Identities=10% Similarity=-0.041 Sum_probs=62.2
Q ss_pred CCEEEEEec------CceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeec-cCCCcEEEEEeCCC------eEEE
Q 001361 305 LDVQNIACG------GRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDA-LKNINVELVACGEH------HTCA 371 (1092)
Q Consensus 305 ~~I~~Ia~G------~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~-l~~~~I~~Ia~G~~------hs~a 371 (1092)
..|..|+.. ....++...+|.|..|-......+ ........ .....|..++.... ..+.
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------RLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------EeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 467777765 556777778899999975432211 00111110 12234666655433 4555
Q ss_pred EEeCCcEEEeCCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCC---CeEEEEEcCCcEEEeecC
Q 001361 372 VTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGP---WHTAVVTSAGQLFTFGDG 439 (1092)
Q Consensus 372 LT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~---~Ht~aLt~dG~Vy~wG~N 439 (1092)
-..+|.|+.|-... +. . ...+.. ....|..|+... ...+....+|.|+.|-..
T Consensus 91 ~~~dg~i~v~d~~~---~~-------~---~~~~~~--~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 91 AGSRGIIRIINPIT---MQ-------C---IKHYVG--HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp EETTCEEEEECTTT---CC-------E---EEEEES--CCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred ecCCCEEEEEEchh---ce-------E---eeeecC--CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 56789999996441 10 0 111111 233577777643 456666778999999643
No 160
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=62.57 E-value=16 Score=42.71 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=57.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCc
Q 001361 859 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQ---LKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVG 935 (1092)
Q Consensus 859 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~---~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~ 935 (1092)
.|.+.+.-++-.+++.+++.|+.+......+|.+++++ +++.++-+++=.++.|+.++-++.+.++|.++.-+||--
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 109 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNI 109 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45555556677777778888888888888888776543 344555666667778889999999999999998887743
No 161
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=62.41 E-value=8.4 Score=44.36 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=55.7
Q ss_pred HhcCCeEEEEecC-CCceeEeEEEeCCCCeEEEecCCc----cceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEE
Q 001361 22 LKKGAHLLKYGRR-GKPKFCPFRLANDESILIWISGKE----EKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIY 96 (1092)
Q Consensus 22 L~~Gt~l~K~~~~-~kp~~r~f~L~~d~~~l~W~~~k~----~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy 96 (1092)
+++| +|.|-+.. ..-|.|+|.|..| ..|.++..+. ...|+|..+..+ .+.... .+.....||.|..
T Consensus 7 ~keG-~L~K~g~~~k~Wk~r~fvL~~~-~~l~yyk~~~~~~~~~~i~l~~~~~~----~~~~~~---~~~~~~~~f~I~~ 77 (446)
T 4ejn_A 7 VKEG-WLHKRGEYIKTWRPRYFLLKND-GTFIGYKERPQDVDQREAPLNNFSVA----QCQLMK---TERPRPNTFIIRC 77 (446)
T ss_dssp EEEE-EEEEEETTTTEEEEEEEEEETT-SBEEEESSCC-------CCCGGGBCT----TCEEEE---ECSSSTTEEEEEE
T ss_pred EEEe-eEEeeccccccccceEEEEeeC-CEEEEEecCCCCCccCcccccCcccc----ceeecC---CCCCCCceeEEEc
Confidence 4455 45566543 3458899999866 5666665432 234555443221 000000 0122246999987
Q ss_pred cC-cee---EEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 97 ND-RSL---DLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 97 ~~-rsL---DLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
.+ ++. -+.+.++++++.|+.+|+..+...+
T Consensus 78 ~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~~~~ 111 (446)
T 4ejn_A 78 LQWTTVIERTFHVETPEEREEWTTAIQTVADGLK 111 (446)
T ss_dssp EETTEEEEEEEECSSHHHHHHHHHHHHHHCCC--
T ss_pred CCCceeeeeEEecCCHHHHHHHHHHHHhhhhhhh
Confidence 54 333 5788999999999999999886544
No 162
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=61.98 E-value=88 Score=34.03 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=13.7
Q ss_pred CCeEEEEEeCCcEEEeCCc
Q 001361 366 EHHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 366 ~~hs~aLT~dG~Vy~wG~n 384 (1092)
..|++++ .+|+||.+|..
T Consensus 110 ~~~~~~~-~~~~iyv~GG~ 127 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGGV 127 (357)
T ss_dssp SSEEEEE-ETTEEEEEECC
T ss_pred ccceEEE-ECCEEEEEeCc
Confidence 3566666 79999999954
No 163
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=61.80 E-value=13 Score=41.46 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=51.8
Q ss_pred CCCceeEeEEEeCCCCeEEEecCCc---------------cceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcC
Q 001361 34 RGKPKFCPFRLANDESILIWISGKE---------------EKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND 98 (1092)
Q Consensus 34 ~~kp~~r~f~L~~d~~~l~W~~~k~---------------~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~ 98 (1092)
.|+.+.|+|+|=.| .|+....+. +..|+|+++. |+.-. +......+|.|+..+
T Consensus 256 ~g~~~~~~~fLF~d--~Ll~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~-v~~~~---------d~~~~~~~F~i~~~~ 323 (354)
T 1dbh_A 256 VGAKHERHIFLFDG--LMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQ-INDKD---------DTNEYKHAFEIILKD 323 (354)
T ss_dssp TTCSSCEEEEEESS--EEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCE-EEECC---------CSSSCCSEEEECCTT
T ss_pred EecCceEEEEEeCC--EEEEEecCCCCCCCCCCCCcceeEEEEEeccceE-EEeCC---------cccccCccEEEecCC
Confidence 36788899999877 454443221 1235554442 11111 111235789998875
Q ss_pred -ceeEEEeCCHHHHHHHHHHHHHHHH
Q 001361 99 -RSLDLICKDKDEAEVWFTGLKALIS 123 (1092)
Q Consensus 99 -rsLDLia~~~~e~~~Wv~gL~~Li~ 123 (1092)
+++-|.|.|+++.+.|+..|+.+..
T Consensus 324 ~~~~~l~a~s~~ek~~W~~~i~~~~~ 349 (354)
T 1dbh_A 324 ENSVIFSAKSAEEKNNWMAALISLQY 349 (354)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999998875
No 164
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=61.42 E-value=36 Score=40.12 Aligned_cols=77 Identities=17% Similarity=0.067 Sum_probs=55.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 001361 859 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQ-----------LKEALAVAGEETAKCRAAKDVIKSLTAQLKD 927 (1092)
Q Consensus 859 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~-----------~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~ 927 (1092)
.|.+.+.-++-.+++.+++.|+.+......+|.+++++ +++.++-+++=.++.|+.++-++.+.++|.+
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666777777777777777777777765533 2344555666667788899999999999999
Q ss_pred HHhhCCCc
Q 001361 928 MAEMLPVG 935 (1092)
Q Consensus 928 ~~e~lp~~ 935 (1092)
+.-+||--
T Consensus 149 ~l~~iPN~ 156 (501)
T 1wle_A 149 RALRLPNQ 156 (501)
T ss_dssp HHTTSCCC
T ss_pred HHHhCCCC
Confidence 98888754
No 165
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=60.28 E-value=25 Score=38.37 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=50.4
Q ss_pred CCceeEeEEEeCCCCeEEEecCCc----------cceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc-----Cc
Q 001361 35 GKPKFCPFRLANDESILIWISGKE----------EKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN-----DR 99 (1092)
Q Consensus 35 ~kp~~r~f~L~~d~~~l~W~~~k~----------~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~-----~r 99 (1092)
++.+.|+++|=.| .|+....++ +..|+++++. |.. ....+..+|.|.++ ++
T Consensus 219 ~~~~~r~~fLF~d--~Ll~~k~~~~~~~~~~y~~k~~i~l~~~~-v~e-----------~~~~~~~~F~i~~~~~~~~~~ 284 (311)
T 1nty_A 219 RKGRERHLFLFEM--SLVFSKEVKDSSGRSKYLYKSKLFTSELG-VTE-----------HVEGDPCKFALWVGRTPTSDN 284 (311)
T ss_dssp CCEEEEEEEEESS--EEEEEEEEECTTCCEEEEEEEEEEGGGEE-EEC-----------CCTTCTTEEEEEESSSCCTTT
T ss_pred cccceeEEEeccC--eEEEEEeeccCCCCceeEEeeeeecccee-eEE-----------ccCCCCceEEEEeCCCCCCCc
Confidence 3568888999887 455543211 1235555442 110 01123578999984 36
Q ss_pred eeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 100 SLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 100 sLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
++-|.|.|+++.+.|+..|+.+|..
T Consensus 285 ~~~l~a~s~~ek~~W~~~i~~~i~e 309 (311)
T 1nty_A 285 KIVLKASSIENKQDWIKHIREVIQE 309 (311)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999865
No 166
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=59.99 E-value=98 Score=32.70 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=12.2
Q ss_pred CeEEEEEeCCcEEEeCCc
Q 001361 367 HHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 367 ~hs~aLT~dG~Vy~wG~n 384 (1092)
.|++++ -+|+||.+|..
T Consensus 101 ~~~~~~-~~~~iyv~GG~ 117 (302)
T 2xn4_A 101 TLGAAV-LNGLLYAVGGF 117 (302)
T ss_dssp SCEEEE-ETTEEEEEEEE
T ss_pred ceEEEE-ECCEEEEEcCC
Confidence 466555 48899999854
No 167
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=59.84 E-value=15 Score=42.10 Aligned_cols=58 Identities=19% Similarity=0.274 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 870 IKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 870 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
..|+.++..|+++++.++.+|++++..+++.-....+| ...-|.|-++|.||..++-+
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~rr~l~n~~~elkgnIrV 63 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE-------ETVRRTLHNELQELRGNIRV 63 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCCCeEE
Confidence 33444455555555555555555555444433322222 23346678888898766533
No 168
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=59.82 E-value=12 Score=33.23 Aligned_cols=56 Identities=20% Similarity=0.301 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH--HHHHHHhhC
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA--QLKDMAEML 932 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~--qlk~~~e~l 932 (1092)
..+|++.+.+|+.+.++++.+|+.++.++.+ ..+ .+..++-|+-|.. .+||++-.|
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~------~~~--~~~~~~hI~~Lh~YNeiKD~gq~L 60 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKN------RDA--KQTVQKHIDLLHTYNEIRDIALGM 60 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS------SCH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCH--HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4567777777777777777777776665542 001 1234566766664 677765544
No 169
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=59.72 E-value=1.7e+02 Score=30.42 Aligned_cols=239 Identities=13% Similarity=0.022 Sum_probs=112.2
Q ss_pred EEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeecc-CCCcEEEEEeCC-CeEEEEEeCCcEEEeCCccCC
Q 001361 310 IACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDAL-KNINVELVACGE-HHTCAVTLSGDMYTWGGSNCN 387 (1092)
Q Consensus 310 Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l-~~~~I~~Ia~G~-~hs~aLT~dG~Vy~wG~n~~~ 387 (1092)
+..+.-..+.+..||+++.++......+...... ....+..+ ....|..++... ...++...+|.|..|-.. .
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~--~ 81 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR---HARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDIS--H 81 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCS---EEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETT--S
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCC---ccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECC--C
Confidence 3344556788899999999887554433221111 11111111 233566665433 233444458999999644 1
Q ss_pred CCccCCCCCcceecceeecCCCCCCcEEEEEeCCC--eEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCCe
Q 001361 388 FGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPW--HTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLR 465 (1092)
Q Consensus 388 ~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~--Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~ 465 (1092)
... .. ....+........|..++.... ..++...+|.|+.|-..... . .....+.. ....
T Consensus 82 ~~~------~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~------~---~~~~~~~~-~~~~ 143 (337)
T 1gxr_A 82 PGN------KS--PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT------P---RIKAELTS-SAPA 143 (337)
T ss_dssp TTC------CS--CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------EEEEEEEC-SSSC
T ss_pred CCc------ee--eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC------c---ceeeeccc-CCCc
Confidence 110 00 0011111112335666666543 44555678899988533210 0 00001111 1123
Q ss_pred EEEEecCCc-eEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEee--CcEEEE
Q 001361 466 TVRAACGVW-HTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCG--HSLTVA 542 (1092)
Q Consensus 466 I~~VacG~~-ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G--~~htla 542 (1092)
|..++.... ..++.. ..+|.|+.|-.... + ....+. .....|..++.. ....+.
T Consensus 144 i~~~~~~~~~~~l~~~-----------~~dg~v~~~d~~~~-~----------~~~~~~-~~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 144 CYALAISPDSKVCFSC-----------CSDGNIAVWDLHNQ-T----------LVRQFQ-GHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp EEEEEECTTSSEEEEE-----------ETTSCEEEEETTTT-E----------EEEEEC-CCSSCEEEEEECTTSSEEEE
T ss_pred eEEEEECCCCCEEEEE-----------eCCCcEEEEeCCCC-c----------eeeeee-cccCceEEEEECCCCCEEEE
Confidence 444443322 222222 15788888854321 0 111111 122456665553 335555
Q ss_pred EecCCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEEEc--CCEEEEEEcCCeEEEEeCC
Q 001361 543 LTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACG--DYHVAVLTSRTEVYTWGKG 607 (1092)
Q Consensus 543 Lt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G--~~HslaLT~dG~Vy~WG~n 607 (1092)
...+|.|+.|-.... .+.... .....|..++.. ....++-..+|.|+.|-..
T Consensus 201 ~~~dg~i~~~d~~~~-----------~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 201 GGLDNTVRSWDLREG-----------RQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp EETTSEEEEEETTTT-----------EEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EecCCcEEEEECCCC-----------ceEeee--cCCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 667889999864321 011111 112346666653 3344555678889988654
No 170
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=59.61 E-value=22 Score=37.21 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=63.0
Q ss_pred EEEecCCCceeEeEEEe---C--CCCeE-EEec-------CCccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEE
Q 001361 29 LKYGRRGKPKFCPFRLA---N--DESIL-IWIS-------GKEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLI 95 (1092)
Q Consensus 29 ~K~~~~~kp~~r~f~L~---~--d~~~l-~W~~-------~k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii 95 (1092)
.|++.+.|-|.|+..|- + |.-.| ++.. .+.+.+|.|.+|-.+-.|... +.+.+.+.||
T Consensus 15 vk~r~~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~g~~l---------dk~s~TlAII 85 (224)
T 3ml4_A 15 VKLRDGKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALPY---------EGLAHTLAII 85 (224)
T ss_dssp EEEC---CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEEEEEE---------TTEEEEEEEE
T ss_pred eeeecCCceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCccccccc---------cCcccEEEEE
Confidence 47766667777877774 2 22123 5533 224556999999999888755 4557889999
Q ss_pred EcCceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 96 YNDRSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 96 y~~rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
+.+.++=|-+++.+++..|..-|++.+..
T Consensus 86 c~d~~~vLAFds~e~l~~W~~~l~~slGe 114 (224)
T 3ml4_A 86 CLSQAVMLGFDSHEAMCAWDTRIRYALGE 114 (224)
T ss_dssp ESSCEEEEECSSHHHHHHHHHHHHHHTSS
T ss_pred ecCcEEEEEeCCHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999986644
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=59.34 E-value=1.7e+02 Score=30.23 Aligned_cols=16 Identities=13% Similarity=0.432 Sum_probs=10.8
Q ss_pred EEEEEecCCcEEEEeC
Q 001361 539 LTVALTTTGHVYTMGS 554 (1092)
Q Consensus 539 htlaLt~dG~Vy~wG~ 554 (1092)
..++++.+|++|+...
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 4567777777777654
No 172
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=58.74 E-value=32 Score=40.32 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=52.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 859 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQ---LKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 859 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~---~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
+|.+...-++-.+++.+++.|+.+......+|.+++++ +++.++-+++=.++.++.++-++.|.++|.++.-.||-
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 110 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45555445666677777777777777777777666543 33444445555667778899999999999999887764
No 173
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=58.47 E-value=1.8e+02 Score=30.45 Aligned_cols=17 Identities=18% Similarity=0.215 Sum_probs=12.3
Q ss_pred CeEEEEEeCCcEEEeCCc
Q 001361 367 HHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 367 ~hs~aLT~dG~Vy~wG~n 384 (1092)
.|++++. +|+||.+|..
T Consensus 105 ~~~~~~~-~~~lyv~GG~ 121 (301)
T 2vpj_A 105 LAGATTL-GDMIYVSGGF 121 (301)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred ceeEEEE-CCEEEEEccc
Confidence 4555544 8999999965
No 174
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=58.44 E-value=1.9e+02 Score=30.54 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=17.5
Q ss_pred CCcEEEEEeC-CCeEEEEEcCCc-EEEeec
Q 001361 411 GIHVSSVSCG-PWHTAVVTSAGQ-LFTFGD 438 (1092)
Q Consensus 411 ~~~I~~IscG-~~Ht~aLt~dG~-Vy~wG~ 438 (1092)
+-++.-..++ ....++++.+|+ ++.|+.
T Consensus 87 dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~ 116 (276)
T 3no2_A 87 DGNALVAWCGHPSTILEVNMKGEVLSKTEF 116 (276)
T ss_dssp TSCEEEEEESTTEEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEecCCCCEEEEEeCCCCEEEEEec
Confidence 3355555666 556667778887 566653
No 175
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=58.41 E-value=71 Score=34.19 Aligned_cols=16 Identities=6% Similarity=0.135 Sum_probs=11.7
Q ss_pred CeEEEEEcCCcEEEeec
Q 001361 422 WHTAVVTSAGQLFTFGD 438 (1092)
Q Consensus 422 ~Ht~aLt~dG~Vy~wG~ 438 (1092)
.|++++. +|+||.+|-
T Consensus 91 ~~~~~~~-~~~lyv~GG 106 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGG 106 (315)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceeEEEE-CCEEEEEeC
Confidence 4666554 789999984
No 176
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=58.06 E-value=51 Score=31.38 Aligned_cols=90 Identities=14% Similarity=0.272 Sum_probs=57.8
Q ss_pred CeEEEEecCCCc-eeEeEEEeCCCCeEEEec----CCccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCce
Q 001361 26 AHLLKYGRRGKP-KFCPFRLANDESILIWIS----GKEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDRS 100 (1092)
Q Consensus 26 t~l~K~~~~~kp-~~r~f~L~~d~~~l~W~~----~k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~rs 100 (1092)
.+|+++..+-+. |++||+||.. .|.-+. .+--|.|+|++|..|.+-..-... .....+.||=|+....+
T Consensus 12 GW~VH~t~~d~~rKRHYWrLD~K--~Itlf~~e~~~~~ykeIpL~eIl~v~~~~~~~~l----~~~~~~hcFEi~T~~~~ 85 (125)
T 2coa_A 12 GWVVHYSNKDTLRKRHYWRLDCK--CITLFQNNTTNRYYKEIPLSEILTVESAQNFSLV----PPGTNPHCFEIVTANAT 85 (125)
T ss_dssp EEEEECCSSSCCCEEEEEEECSS--EEEEESSSSCSSCSEEEETTTCCEEEESCCCSSS----CTTSCCEEEEEECSSCC
T ss_pred ceEEEEccCCccccceeeEecCC--eEEEEecCCCCceeeeeehhHeeccccccccccc----CCCCCCceEEEEeCCeE
Confidence 467788666443 6667777764 565554 344567999999999886554311 12335689999986543
Q ss_pred eEEEeCC------------HHHHHHHHHHHHHHH
Q 001361 101 LDLICKD------------KDEAEVWFTGLKALI 122 (1092)
Q Consensus 101 LDLia~~------------~~e~~~Wv~gL~~Li 122 (1092)
.= |..+ .+.+..|..+++.-+
T Consensus 86 yy-Vg~~~~~~p~~~sg~g~~~a~~W~~aIrqAL 118 (125)
T 2coa_A 86 YF-VGEMPGGTPGGPSGQGAEAARGWETAIRQAL 118 (125)
T ss_dssp CC-EECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred EE-EccCCCCCCCCcCccccHHHHHHHHHHHhhc
Confidence 32 2221 367999999987654
No 177
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=57.43 E-value=31 Score=33.85 Aligned_cols=75 Identities=5% Similarity=0.080 Sum_probs=47.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhhhhh-HHHHHHHHHHHHHH
Q 001361 859 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE----------ALAVAGEETAKCRA-AKDVIKSLTAQLKD 927 (1092)
Q Consensus 859 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e----------a~~~a~ee~~k~~~-ake~ik~l~~qlk~ 927 (1092)
+..++...+++..|+.+...|++++..++.||+.-.|-++. ...++.+...|.++ .++.|+-+-.+-..
T Consensus 60 vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~q 139 (152)
T 3a7p_A 60 VSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEK 139 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333337788999999999999999999888887765553 12334444445444 45555555555545
Q ss_pred HHhhCC
Q 001361 928 MAEMLP 933 (1092)
Q Consensus 928 ~~e~lp 933 (1092)
=||++-
T Consensus 140 EAe~MN 145 (152)
T 3a7p_A 140 ETEAMN 145 (152)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 555554
No 178
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=57.19 E-value=46 Score=27.07 Aligned_cols=53 Identities=26% Similarity=0.289 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQL 925 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ql 925 (1092)
...+.+++..+..++.+++....+++.+++++..+ .+.++.+.|-|..|..|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~-------~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 4 ANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEI-------FEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 45667777788888888888888888877777652 223344445555444444
No 179
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=56.94 E-value=2.4e+02 Score=31.34 Aligned_cols=261 Identities=8% Similarity=-0.006 Sum_probs=119.1
Q ss_pred CEEEEEecCc---eEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeC---CCeEEEEEeCCcEE
Q 001361 306 DVQNIACGGR---HAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACG---EHHTCAVTLSGDMY 379 (1092)
Q Consensus 306 ~I~~Ia~G~~---hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G---~~hs~aLT~dG~Vy 379 (1092)
.|..|+.... ..+..+.+|.|+.|-......... ......+...-......|..|+.. ..+.+.-..+|.|+
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 4555555432 333445789999998654211100 000011111111112234444442 22555556689999
Q ss_pred EeCCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeC---CCeEEEEEcCCcEEEeecCCCcccCCCCCcccccce
Q 001361 380 TWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCG---PWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPR 456 (1092)
Q Consensus 380 ~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG---~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~ 456 (1092)
.|-.. ..+.. .....+..... .....|..|+.. ....+....+|.|+.|-....... .+.
T Consensus 208 vwd~~--~~~~~-----~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~---------~~~ 270 (430)
T 2xyi_A 208 LWDIN--ATPKE-----HRVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS---------KPS 270 (430)
T ss_dssp EEETT--SCCBG-----GGEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS---------SCS
T ss_pred EEeCC--CCCCC-----Cceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC---------cce
Confidence 99755 11100 01111111111 123357777763 345556668999999975432110 111
Q ss_pred eeecCCCCeEEEEecCCc--eEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEE
Q 001361 457 EVDSLKGLRTVRAACGVW--HTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVS 534 (1092)
Q Consensus 457 ~V~~l~~~~I~~VacG~~--ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia 534 (1092)
.........|..++.... +.++... .+|.|..|-....++ |..........|..|.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~~~l~tg~-----------~dg~v~vwd~~~~~~-----------~~~~~~~h~~~v~~i~ 328 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSEFILATGS-----------ADKTVALWDLRNLKL-----------KLHSFESHKDEIFQVQ 328 (430)
T ss_dssp EEEECCSSCEEEEEECSSCTTEEEEEE-----------TTSEEEEEETTCTTS-----------CSEEEECCSSCEEEEE
T ss_pred eEeecCCCCeEEEEeCCCCCCEEEEEe-----------CCCeEEEEeCCCCCC-----------CeEEeecCCCCEEEEE
Confidence 111111223555554332 2333332 588999997543221 1111111224566665
Q ss_pred eeC---cEEEEEecCCcEEEEeCCCCCCCCCCCC-CCccceeeccc-cCCCCEEEEEEcCC---EEEEEEcCCeEEEEeC
Q 001361 535 CGH---SLTVALTTTGHVYTMGSPVYGQLGDPKA-NGKLPTRVEGK-LTKNFVEEIACGDY---HVAVLTSRTEVYTWGK 606 (1092)
Q Consensus 535 ~G~---~htlaLt~dG~Vy~wG~N~~GQLG~~~~-~~~~P~~v~~~-l~~~~I~~Ia~G~~---HslaLT~dG~Vy~WG~ 606 (1092)
... ...+.-..+|.|..|--...+....... ....|..+... -....|..++.... ..+....+|.|..|-.
T Consensus 329 ~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 329 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp ECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred ECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 532 3345556788899987544322110000 00001122111 11234777776544 4455567899999975
Q ss_pred C
Q 001361 607 G 607 (1092)
Q Consensus 607 n 607 (1092)
.
T Consensus 409 ~ 409 (430)
T 2xyi_A 409 A 409 (430)
T ss_dssp C
T ss_pred c
Confidence 4
No 180
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=56.79 E-value=26 Score=39.14 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=33.1
Q ss_pred CCCeEEEEEc-----CceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 88 EYQSFSLIYN-----DRSLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 88 ~~~~FSiiy~-----~rsLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
+..+|.|++. .+++-|.|.|+++.+.|+..|+.++...+
T Consensus 278 ~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~ 321 (354)
T 2rgn_B 278 DPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILESQR 321 (354)
T ss_dssp CTTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 4579999983 27888999999999999999999997643
No 181
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=56.72 E-value=16 Score=39.88 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=49.9
Q ss_pred cCCCceeEeEEEeCCCCeEEEecC---Cccce----EEccc--eeecccCCCChhhhcCCCCCCCCCeEEEEEcC-----
Q 001361 33 RRGKPKFCPFRLANDESILIWISG---KEEKH----LKLSH--VSRIIPGQRTPIFQRYPRPEKEYQSFSLIYND----- 98 (1092)
Q Consensus 33 ~~~kp~~r~f~L~~d~~~l~W~~~---k~~~~----i~l~~--I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~----- 98 (1092)
++++-+.|+|.|..+ .|.+... |..+. ++|++ |..+. . +++... .+.+.||.|....
T Consensus 170 ~~k~WkkRyfvLr~s--gLyy~~K~~sk~~r~l~~l~~L~~~~VY~~~---~---~kkk~k-aPt~~~F~ik~~~~~~~~ 240 (281)
T 4gmv_A 170 GKKSWKKRYFLLRAS--GIYYVPKGKAKVSRDLVCFLQLDHVNVYYGQ---D---YRNKYK-APTDYCLVLKHPQIQKKS 240 (281)
T ss_dssp TSSCEEEEEEEECSS--CEEEC---------CCEEEECGGGCEEEEES---S---HHHHTC-CSCSCEEEEECTTCCSCC
T ss_pred CCCCCeEEEEEEeCC--EEEEEeCCCCCccccceEEEEcCCcEEEEec---c---cccccC-CCCCcEEEEecCccCCCC
Confidence 455668899999876 3544442 22221 25544 33332 1 222222 3556799999832
Q ss_pred -ceeEEEeCCHHHHHHHHHHHHHHHHcc
Q 001361 99 -RSLDLICKDKDEAEVWFTGLKALISRS 125 (1092)
Q Consensus 99 -rsLDLia~~~~e~~~Wv~gL~~Li~~~ 125 (1092)
..--|.|+|+++.+.|+.+|+...-..
T Consensus 241 ~~~~~~caede~~~~~Wv~Air~ak~g~ 268 (281)
T 4gmv_A 241 QYIKYLCCDDVRTLHQWVNGIRIAKYGK 268 (281)
T ss_dssp TTCEEEECSSHHHHHHHHHHHHHHHHTH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhhCc
Confidence 345688899999999999999876443
No 182
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=56.69 E-value=2e+02 Score=30.27 Aligned_cols=195 Identities=9% Similarity=-0.003 Sum_probs=98.8
Q ss_pred CCcEEEEEeCCC-----eEEEEEeCCcEEEeCCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCC--CeEEEEE
Q 001361 356 NINVELVACGEH-----HTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGP--WHTAVVT 428 (1092)
Q Consensus 356 ~~~I~~Ia~G~~-----hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~--~Ht~aLt 428 (1092)
...|..|+.... ..+.-..||.|+.|-.. ..+. .....+.. ....|..++... .+.+...
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~--~~~~---------~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQ--DSGQ---------TIPKAQQM--HTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEEC--TTSC---------EEEEEEEE--CSSCEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcC--CCCc---------eeEEEecc--ccCCEEEEEECcCCCEEEEEc
Confidence 357888887764 34444668999999644 1111 11111211 123566666543 3556667
Q ss_pred cCCcEEEeecCCCcccCCCCCcccccceeeecCCCCeEEEEec--CCceEEEEEEeeecCCCCccCCCCeEEEecCCCCC
Q 001361 429 SAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAAC--GVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRG 506 (1092)
Q Consensus 429 ~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Vac--G~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~G 506 (1092)
.+|.|..|-...... ..+.. ....|..++. ......+++- ..+|.|+.|-.....
T Consensus 106 ~dg~v~iwd~~~~~~------------~~~~~-~~~~v~~~~~~~~~~~~~l~~~----------~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQA------------IQIAQ-HDAPVKTIHWIKAPNYSCVMTG----------SWDKTLKFWDTRSSN 162 (368)
T ss_dssp TTSEEEEEETTTTEE------------EEEEE-CSSCEEEEEEEECSSCEEEEEE----------ETTSEEEEECSSCSS
T ss_pred CCCcEEEEEcCCCCc------------eeecc-ccCceEEEEEEeCCCCCEEEEc----------cCCCcEEEEECCCCc
Confidence 789999996432111 11111 1224555554 3333322221 158999999543211
Q ss_pred CcCCCCCCcceeeEEecccCCCCeEEEEeeCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCccceeecccc-CCCCEEEE
Q 001361 507 RLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKL-TKNFVEEI 585 (1092)
Q Consensus 507 QLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l-~~~~I~~I 585 (1092)
. ...+. ....+..+..-....++.+.+|.++.|-...... ....+.... ....+..+
T Consensus 163 ~-----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 220 (368)
T 3mmy_A 163 P-----------MMVLQ--LPERCYCADVIYPMAVVATAERGLIVYQLENQPS---------EFRRIESPLKHQHRCVAI 220 (368)
T ss_dssp C-----------SEEEE--CSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE---------EEEECCCSCSSCEEEEEE
T ss_pred E-----------EEEEe--cCCCceEEEecCCeeEEEeCCCcEEEEEeccccc---------hhhhccccccCCCceEEE
Confidence 0 01111 1134566666667788888999999997543211 001111000 11123333
Q ss_pred EEcCCE----EEEEEcCCeEEEEeCCC
Q 001361 586 ACGDYH----VAVLTSRTEVYTWGKGA 608 (1092)
Q Consensus 586 a~G~~H----slaLT~dG~Vy~WG~n~ 608 (1092)
...... .++-..+|.|..|-...
T Consensus 221 ~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 221 FKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp EECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred cccCCCCCCeEEEecCCCcEEEEecCC
Confidence 333332 56667899999997643
No 183
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=56.11 E-value=1.3e+02 Score=31.83 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=12.2
Q ss_pred CeEEEEEeCCcEEEeCCc
Q 001361 367 HHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 367 ~hs~aLT~dG~Vy~wG~n 384 (1092)
.|++++ .+|+||.+|..
T Consensus 54 ~~~~~~-~~~~lyv~GG~ 70 (302)
T 2xn4_A 54 RAGMVY-MAGLVFAVGGF 70 (302)
T ss_dssp SCEEEE-ETTEEEEESCB
T ss_pred cceEEE-ECCEEEEEeCc
Confidence 455554 48999999964
No 184
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=55.70 E-value=2e+02 Score=30.15 Aligned_cols=119 Identities=8% Similarity=-0.028 Sum_probs=56.4
Q ss_pred CEEEEEec--CceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCC--CeEEEEEeC-----C
Q 001361 306 DVQNIACG--GRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGE--HHTCAVTLS-----G 376 (1092)
Q Consensus 306 ~I~~Ia~G--~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~--~hs~aLT~d-----G 376 (1092)
.|..|+.. ..+.+....||.|+.|-......+ ..+. ....|..++... .+.++...+ |
T Consensus 76 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g 142 (369)
T 3zwl_B 76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV-----------ATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPG 142 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE-----------EEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCC
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-----------EEee--cCCCeEEEEEccCCCEEEEecCCccCCCC
Confidence 56666654 445666678999999965432111 1111 223455555433 344444555 8
Q ss_pred cEEEeCCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCC--CeEEEEEcCCcEEEeecC
Q 001361 377 DMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGP--WHTAVVTSAGQLFTFGDG 439 (1092)
Q Consensus 377 ~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~--~Ht~aLt~dG~Vy~wG~N 439 (1092)
.|+.|-... ......-..........+........|..++... .+.++.+.+|.|+.|-..
T Consensus 143 ~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 205 (369)
T 3zwl_B 143 SINIYEIER--DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS 205 (369)
T ss_dssp EEEEEEEEE--CTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred EEEEEEecC--CccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 888886441 1110000000000011111111112455554433 355566778899988643
No 185
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=55.67 E-value=1e+02 Score=32.87 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=12.3
Q ss_pred CeEEEEEeCCcEEEeCCc
Q 001361 367 HHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 367 ~hs~aLT~dG~Vy~wG~n 384 (1092)
.|++++. +|+||.+|..
T Consensus 91 ~~~~~~~-~~~lyv~GG~ 107 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGGR 107 (315)
T ss_dssp SCEEEEE-TTEEEEECCE
T ss_pred ceeEEEE-CCEEEEEeCC
Confidence 4555554 8899999964
No 186
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=54.86 E-value=37 Score=32.50 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTTRQ 896 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~ 896 (1092)
-|..|+.++.+|+.+...++..|..+...
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444445544444444444444433
No 187
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=54.03 E-value=23 Score=40.03 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=27.4
Q ss_pred CceeEEEeCCHHHHHHHHHHHHHHHHccccc
Q 001361 98 DRSLDLICKDKDEAEVWFTGLKALISRSHYR 128 (1092)
Q Consensus 98 ~rsLDLia~~~~e~~~Wv~gL~~Li~~~~~~ 128 (1092)
.++.-|.|.|+++.+.|+..|+..+...+..
T Consensus 344 ~~~~~l~a~s~~ek~~W~~~i~~~i~~~~~~ 374 (385)
T 1txd_A 344 AQIYELVAQTVSEKTVWQDLICRMAASVKEQ 374 (385)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCHHHHHHHHHHHHHHHHhccCC
Confidence 3789999999999999999999999876643
No 188
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=53.85 E-value=21 Score=41.15 Aligned_cols=55 Identities=35% Similarity=0.435 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
.+|+..|+.+++.|.++.+++..|++.++.|+.+ ||.. -|.|-++|.||.+++-+
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~------~~~~--------rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ------SNME--------RKELHNTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH--------HHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH--------HHHHHHHHHHhCCCEEE
Confidence 3566666666666666666666666666665544 4433 36788888898776533
No 189
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=53.82 E-value=2.3e+02 Score=30.25 Aligned_cols=206 Identities=13% Similarity=0.050 Sum_probs=107.0
Q ss_pred CceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeC---CCeEEEEEeCCcEEEeCCccCCCCc
Q 001361 314 GRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACG---EHHTCAVTLSGDMYTWGGSNCNFGL 390 (1092)
Q Consensus 314 ~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G---~~hs~aLT~dG~Vy~wG~n~~~~Gq 390 (1092)
..+.+++|++|++|.---...-. +... . + .-.+.+|..|.+- ....+++|.+|.+.-.-.. .+-+
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp~-~~~~--~------l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~--~~~~ 102 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQALQ-GSKV--S------L-KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLA--EFEY 102 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHHT-SEEC--C------C-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGG--GTTT
T ss_pred CCEEEEEcCCCeEEEEEhhhCcc-Cccc--c------c-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHH--Hhhh
Confidence 45688999999999764211100 0000 0 2 2346788888762 3578899999988876544 2211
Q ss_pred cCCCCCcceecceeecCCCCCCcEEEEEe--CCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCCeEEE
Q 001361 391 LGHGNEMSLWLPKKLNGPLEGIHVSSVSC--GPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVR 468 (1092)
Q Consensus 391 LG~g~~~~~~~P~~v~~~l~~~~I~~Isc--G~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~ 468 (1092)
-. .-.......++..++.+.. +..+.+++|++|++|.+-....-.+|.+..-.. .+..-.+.+|+.
T Consensus 103 ~~--------~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~i~L~~~d~vv~ 170 (276)
T 3no0_A 103 KA--------QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----GIKLEKNDETSG 170 (276)
T ss_dssp CS--------TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----CCCCCTTCCEEE
T ss_pred hc--------CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----EEccCCCCEEEE
Confidence 00 0111111223445665543 455789999999999997655544443221111 122223445655
Q ss_pred EecC--CceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEE--eeCcEEEEEe
Q 001361 469 AACG--VWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVS--CGHSLTVALT 544 (1092)
Q Consensus 469 VacG--~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia--~G~~htlaLt 544 (1092)
+... ..+-++++ .+|.+.-.-..++-..+.+....... ..+..++.+. .+....+++|
T Consensus 171 ~~~~~~~~~ll~~T------------~~G~~kr~~~~e~~~~~R~gkGv~~i------~~~~~lv~~~~~~~~~~i~~~t 232 (276)
T 3no0_A 171 LRIWNGEPYLLVIT------------AKGRVKKISHEEIPKTNRGVKGTEVS------GTKDTLVDLIPIKEEVELLITT 232 (276)
T ss_dssp EEEESSCSEEEEEE------------TTSCEEEEEGGGSCCCCTTCCCEECC------CSSSCEEEEEEESSEEEEEEEE
T ss_pred EEEeCCCCEEEEEe------------CCCcEEEeEHHHcccCCCCCcceEEE------cCCCcEEEEEEeCCCCEEEEEc
Confidence 4432 22344444 46666655444332222221111111 1123344332 3456788999
Q ss_pred cCCcEEE--EeCCCCCCCC
Q 001361 545 TTGHVYT--MGSPVYGQLG 561 (1092)
Q Consensus 545 ~dG~Vy~--wG~N~~GQLG 561 (1092)
++|.+.. +-.++.-.+|
T Consensus 233 ~~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 233 KNGKAFYDKINQKDIPLST 251 (276)
T ss_dssp TTSCEEEEEEEGGGSCBCC
T ss_pred CCCeEEEeeeCHHHCCCcC
Confidence 9999988 7655544444
No 190
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=53.09 E-value=2e+02 Score=29.40 Aligned_cols=228 Identities=8% Similarity=-0.071 Sum_probs=116.0
Q ss_pred CEEEEEe--cCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCC
Q 001361 306 DVQNIAC--GGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGG 383 (1092)
Q Consensus 306 ~I~~Ia~--G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~ 383 (1092)
.|..++. ...+.+.-..+|.|..|-...... ..+..........|..++......+....+|.|+.|-.
T Consensus 61 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~ 131 (313)
T 3odt_A 61 FLNSVCYDSEKELLLFGGKDTMINGVPLFATSG---------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKE 131 (313)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTCCTT---------SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEeeecCC---------CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcC
Confidence 4444443 344556667788888886433110 01111111123467777777777777888999999942
Q ss_pred ccCCCCccCCCCCcceecceeecCCCCCCcEEEEEe---CCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeec
Q 001361 384 SNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSC---GPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDS 460 (1092)
Q Consensus 384 n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~Isc---G~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~ 460 (1092)
. .. ...+.. ....|..+.. .....+....+|.|+.|-... ....+..
T Consensus 132 ~------------~~---~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------------~~~~~~~ 181 (313)
T 3odt_A 132 G------------SL---VYNLQA--HNASVWDAKVVSFSENKFLTASADKTIKLWQNDK-------------VIKTFSG 181 (313)
T ss_dssp T------------EE---EEEEEC--CSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-------------EEEEECS
T ss_pred C------------cE---EEeccc--CCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-------------eEEEEec
Confidence 1 00 011111 1224555543 456677778889999994110 0111111
Q ss_pred CCCCeEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEeeCc-E
Q 001361 461 LKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHS-L 539 (1092)
Q Consensus 461 l~~~~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~-h 539 (1092)
.....|..++......++.. ..+|.|+.|-..... +..........|..++.... .
T Consensus 182 ~~~~~i~~~~~~~~~~~~~~-----------~~dg~i~i~d~~~~~------------~~~~~~~~~~~i~~~~~~~~~~ 238 (313)
T 3odt_A 182 IHNDVVRHLAVVDDGHFISC-----------SNDGLIKLVDMHTGD------------VLRTYEGHESFVYCIKLLPNGD 238 (313)
T ss_dssp SCSSCEEEEEEEETTEEEEE-----------ETTSEEEEEETTTCC------------EEEEEECCSSCEEEEEECTTSC
T ss_pred cCcccEEEEEEcCCCeEEEc-----------cCCCeEEEEECCchh------------hhhhhhcCCceEEEEEEecCCC
Confidence 12223444443322223332 268899999653211 11111112244666655433 4
Q ss_pred EEEEecCCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEEEcCC-EEEEEEcCCeEEEEeCC
Q 001361 540 TVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDY-HVAVLTSRTEVYTWGKG 607 (1092)
Q Consensus 540 tlaLt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~-HslaLT~dG~Vy~WG~n 607 (1092)
.++-..+|.|+.|-.... .....+. .....|..++.-.. ..++-..+|.|+.|=..
T Consensus 239 l~~~~~dg~v~iwd~~~~----------~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKENG----------SLKQVIT--LPAISIWSVDCMSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEEETTSEEEEECTTTC----------CEEEEEE--CSSSCEEEEEECTTSCEEEEETTSCEEEEESC
T ss_pred EEEEecCCEEEEEECCCC----------ceeEEEe--ccCceEEEEEEccCCCEEEEeCCCcEEEEeCC
Confidence 556677889999963221 1111111 22345777776543 35566789999999654
No 191
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=52.71 E-value=52 Score=32.38 Aligned_cols=86 Identities=16% Similarity=0.268 Sum_probs=59.2
Q ss_pred hcCCeEEEE----ecCCC-ceeEeEEEeCCCCeEEEecCC---ccceEEccceeecccCCCChhhhcCCCCCCCCCeEEE
Q 001361 23 KKGAHLLKY----GRRGK-PKFCPFRLANDESILIWISGK---EEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSL 94 (1092)
Q Consensus 23 ~~Gt~l~K~----~~~~k-p~~r~f~L~~d~~~l~W~~~k---~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSi 94 (1092)
..|..++|. +++|- .+.|.|.|..- -.|++.+.. .+..|+++.=..| ....+.+|-|
T Consensus 47 ~~ge~Ilk~G~v~KrkGl~~kkR~liLT~~-PrL~Yvdp~~~~~KGeIpls~~l~v--------------e~k~~~~F~I 111 (151)
T 1w1g_A 47 VENNLILKMGPVDKRKGLFARRRQLLLTEG-PHLYYVDPVNKVLKGEIPWSQELRP--------------EAKNFKTFFV 111 (151)
T ss_dssp TTTCCEEEEEEEEEEETTEEEEEEEEEETT-TEEEEEETTTTEEEEEECCCTTCEE--------------EESSSSEEEE
T ss_pred CCCCcEEEEEEEEecccCcceeEEEEEcCC-ceEEEEcCccccccceEecCCCeeE--------------EEcCCCEEEE
Confidence 378887776 32332 35777778766 677777643 3445777621111 1222459999
Q ss_pred EEcCceeEEEeCCHHHHHHHHHHHHHHHHc
Q 001361 95 IYNDRSLDLICKDKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 95 iy~~rsLDLia~~~~e~~~Wv~gL~~Li~~ 124 (1092)
...+|+..|.+. ...|+.|+..++.++..
T Consensus 112 ~Tp~RtY~~~d~-~~~AqeWv~aI~~~~~~ 140 (151)
T 1w1g_A 112 HTPNRTYYLMDP-SGNAHKWCRKIQEVWRQ 140 (151)
T ss_dssp EETTEEEEEECT-TSCHHHHHHHHHHHHHH
T ss_pred ECCCceEEEEcC-ccCHHHHHHHHHHHHHH
Confidence 999999999887 88999999999999865
No 192
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=52.65 E-value=30 Score=45.36 Aligned_cols=10 Identities=20% Similarity=0.813 Sum_probs=5.1
Q ss_pred CCeEEEecCC
Q 001361 48 ESILIWISGK 57 (1092)
Q Consensus 48 ~~~l~W~~~k 57 (1092)
....+|.++.
T Consensus 30 ~~~~vw~~~~ 39 (1184)
T 1i84_S 30 AKKLVWVPSE 39 (1184)
T ss_dssp CTTEEEECCT
T ss_pred cCCeEEEECC
Confidence 3455666543
No 193
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=52.47 E-value=43 Score=39.25 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=25.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 859 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTR 895 (1092)
Q Consensus 859 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~ 895 (1092)
+|.+-+.-++-.+++.+++.|+.+......+|.++++
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555544566677777777777777777777877665
No 194
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=52.29 E-value=55 Score=28.08 Aligned_cols=51 Identities=12% Similarity=0.261 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCC
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLP 933 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp 933 (1092)
|-+|+..+....++..++|..|+.+.+++.| =.+.|+-|..||...---||
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~e--------------kd~eI~~LqseLDKfrSVl~ 71 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQ--------------KDELIQMLQNELDKYRSVIR 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhhccCC
Confidence 4455666666666777778888888888877 45567778777765433333
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=52.22 E-value=2.3e+02 Score=29.76 Aligned_cols=170 Identities=17% Similarity=0.155 Sum_probs=77.7
Q ss_pred ccCCCcEEEEEeC-CCeEEEEEeCCc-EEEeCCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcC
Q 001361 353 ALKNINVELVACG-EHHTCAVTLSGD-MYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSA 430 (1092)
Q Consensus 353 ~l~~~~I~~Ia~G-~~hs~aLT~dG~-Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~d 430 (1092)
.+.+-++.-..++ ....++++.+|+ |+.|+... + + ......|..+.....+ .+.-...+.....+++.+
T Consensus 84 ~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~---~-~----~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 84 ILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFET---G-I----ERPHAQFRQINKNKKG-NYLVPLFATSEVREIAPN 154 (276)
T ss_dssp ECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECC---S-C----SSGGGSCSCCEECTTS-CEEEEETTTTEEEEECTT
T ss_pred ECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccC---C-C----CcccccccCceECCCC-CEEEEecCCCEEEEECCC
Confidence 3445556555666 555666777887 45554320 0 0 0011112222111223 444333445566677777
Q ss_pred Cc-EEEeecCCCcccCCCCCcccccceeeecCCCCeEEEEecCCceEEEEEEeeecCCCCccCC-CCeEEEecCCCCCCc
Q 001361 431 GQ-LFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCS-SGKLFTWGDGDRGRL 508 (1092)
Q Consensus 431 G~-Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLte~~~~~s~~~~~~-~G~ly~WG~n~~GQL 508 (1092)
|+ +|.++... .|.-+..+.+-.+. |++...+.++..+ .. ...+|.++.+...
T Consensus 155 G~~~w~~~~~~-------------~~~~~~~~~~g~~~-v~~~~~~~v~~~d----------~~tG~~~w~~~~~~~~-- 208 (276)
T 3no2_A 155 GQLLNSVKLSG-------------TPFSSAFLDNGDCL-VACGDAHCFVQLN----------LESNRIVRRVNANDIE-- 208 (276)
T ss_dssp SCEEEEEECSS-------------CCCEEEECTTSCEE-EECBTTSEEEEEC----------TTTCCEEEEEEGGGSB--
T ss_pred CCEEEEEECCC-------------CccceeEcCCCCEE-EEeCCCCeEEEEe----------CcCCcEEEEecCCCCC--
Confidence 76 46665420 12222223332333 4444444443331 12 3356776643211
Q ss_pred CCCCCCcceeeEEecccCCCCeEEEEe--e---------CcEEEEEecCCcEEEEeCCCCCCCCCC
Q 001361 509 GHGDKEARLVPTCVAALVEPNFCQVSC--G---------HSLTVALTTTGHVYTMGSPVYGQLGDP 563 (1092)
Q Consensus 509 G~g~~~~~~~P~~V~~l~~~~I~~Ia~--G---------~~htlaLt~dG~Vy~wG~N~~GQLG~~ 563 (1092)
+ .....|.-+..+.+-++. |.. | ..+.+.++.+|+| .|-.+....+|..
T Consensus 209 ~----~~l~~~~~~~~~~~G~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~~ 268 (276)
T 3no2_A 209 G----VQLFFVAQLFPLQNGGLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGMI 268 (276)
T ss_dssp S----CCCSEEEEEEECTTSCEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCCC
T ss_pred C----ccccccccceEcCCCCEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCcccccce
Confidence 0 012234444444444444 333 2 2357888888886 5655555555543
No 196
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=52.15 E-value=98 Score=28.63 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=58.1
Q ss_pred hcCCeEEEEecC-CCcee-EeEEEeCCCCeEEEec---CCc-----cceEEccceeecccCCCChhhhcCCCCCCCCCeE
Q 001361 23 KKGAHLLKYGRR-GKPKF-CPFRLANDESILIWIS---GKE-----EKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSF 92 (1092)
Q Consensus 23 ~~Gt~l~K~~~~-~kp~~-r~f~L~~d~~~l~W~~---~k~-----~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~F 92 (1092)
.+| .|+|+.++ .+|.. ++|+|=.| .|+... .+. ...++|.+|.=+-.. +...-..+|
T Consensus 10 ~eG-~l~el~~~~~k~~~~v~~FLfND--~Ll~a~~~~~~~~~~~~~~~~~L~~~~v~d~~----------d~~~~~n~f 76 (113)
T 1zc3_B 10 YNG-DLVEYEADHMAQLQRVHGFLMND--CLLVATWLPQRRGMYRYNALYPLDRLAVVNVK----------DNPPMKDMF 76 (113)
T ss_dssp EEE-EEEEEETTTCCEEEEEEEEEESS--EEEEEEEECCTTSCEEEEEEEETTTCEEEEEC----------CBTTBSSEE
T ss_pred EeC-cEEEEccccCCCCccEEEEecCC--EEEEEEEeccCcccEEEEEEEEcccCEEEECC----------CCcccceEE
Confidence 455 57788654 45654 56888888 343332 221 223566665444331 112346799
Q ss_pred EEEEcCceeEEEeCCHHHHHHHHHHHHHHHH
Q 001361 93 SLIYNDRSLDLICKDKDEAEVWFTGLKALIS 123 (1092)
Q Consensus 93 Siiy~~rsLDLia~~~~e~~~Wv~gL~~Li~ 123 (1092)
-|..+.++.=+-|++.+|-..|+..|+.-+.
T Consensus 77 ~i~~~~~s~~~~aes~~eK~~Wl~~~~~a~~ 107 (113)
T 1zc3_B 77 KLLMFPESRIFQAENAKIKREWLEVLEETKR 107 (113)
T ss_dssp EEEETTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEeCCceEEEEcCCHHHHHHHHHHHHHHHH
Confidence 9999889998999999999999999987664
No 197
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=51.93 E-value=91 Score=30.15 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHH
Q 001361 913 AAKDVIKSLTAQLKD 927 (1092)
Q Consensus 913 ~ake~ik~l~~qlk~ 927 (1092)
+-.+=|+-|-+.|++
T Consensus 121 ~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 121 KYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344455555555544
No 198
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=51.52 E-value=98 Score=29.05 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIK 919 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik 919 (1092)
-.++..||.||..++..--.++.||..++-.+++--.--.+|.+++..+..-|-
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~ 72 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQ 72 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 567888888888888777777777776666665544444556666655544333
No 199
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.24 E-value=48 Score=32.69 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhh
Q 001361 885 LQEIELERTTRQ-LKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEM 931 (1092)
Q Consensus 885 ~~~~ei~~~~~~-~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~ 931 (1092)
..+.||+.+... .+||-.|++++-..+-++++=...|..||+|--.+
T Consensus 83 ~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~ 130 (154)
T 2ocy_A 83 KLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTL 130 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443332 24677777766666666666666677777765443
No 200
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=51.12 E-value=30 Score=30.20 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIEL 890 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei 890 (1092)
.|||..||--|+.|..+--+-+.+|
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEkKL 49 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEWKL 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888777776666555544444333
No 201
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=51.06 E-value=39 Score=31.27 Aligned_cols=44 Identities=14% Similarity=0.325 Sum_probs=21.8
Q ss_pred Ccchhhhhhhh---HHHHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHH
Q 001361 855 PKIVVDDAKRT---SEEVIKLR-AQVEELTRKSQLQEI---ELERTTRQLK 898 (1092)
Q Consensus 855 ~~~~~~~l~~~---~qev~~l~-~qv~~L~~~~~~~~~---ei~~~~~~~~ 898 (1092)
.+...++|+.. -+|....+ .++..|+++...++. .|+-++.|++
T Consensus 22 ~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~ 72 (110)
T 2v4h_A 22 ASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQAD 72 (110)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777765 33332222 255555555555554 4444555544
No 202
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=50.88 E-value=32 Score=32.22 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=24.1
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEE-VIKLRAQVEELTRKSQLQEIELERTTRQL 897 (1092)
Q Consensus 866 ~qe-v~~l~~qv~~L~~~~~~~~~ei~~~~~~~ 897 (1092)
.+| +..+-+|.+.|+||++++..+++.+.+|.
T Consensus 96 red~L~~~laqLe~ls~qL~~ls~~v~~L~~q~ 128 (140)
T 3iyn_Q 96 RDDKLTALLAQLDSLTRELNVVSQQLLDLRQQV 128 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 56677788999999888888888777544
No 203
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=50.50 E-value=70 Score=32.63 Aligned_cols=57 Identities=16% Similarity=0.312 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTTRQLKEA-------LAVAGEETAKCRAAKDVIKSLTAQLKD 927 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea-------~~~a~ee~~k~~~ake~ik~l~~qlk~ 927 (1092)
|+..+..+...|..++..+..|++..+.|++.+ +...-+|.+..+.. ...|..+|.+
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~---~~~l~~~ire 113 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAI---KEQLHKYVRE 113 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 444444566677777777777777777777665 55566666664443 3444444443
No 204
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=50.25 E-value=95 Score=28.50 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
..+..+|+.++..|..+.+.++.+++++..-++
T Consensus 12 i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~ 44 (117)
T 2zqm_A 12 LGQLESYQQQLQLVVQQKQKVQLELTEAKKALD 44 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666555544333
No 205
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=49.62 E-value=1.2e+02 Score=27.84 Aligned_cols=58 Identities=22% Similarity=0.190 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 870 IKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 870 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
..|.=||..|+-++|.++..+-.++++.+|-.. .+..-|-.+..|+.++.++.+.|-.
T Consensus 26 sal~YqVdlLKD~LEe~eE~~aql~Re~~eK~r-------e~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 26 TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNK-------EFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334449999999999999999999999887422 2445666777777777777766544
No 206
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=49.26 E-value=30 Score=27.34 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=23.0
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRA------QVEELTRKSQLQEIELER 892 (1092)
Q Consensus 866 ~qev~~l~~------qv~~L~~~~~~~~~ei~~ 892 (1092)
++++++-+. +|..|++++++++.|+++
T Consensus 13 I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 13 IHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 777776665 999999999999999986
No 207
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=48.57 E-value=1.5e+02 Score=31.50 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=12.3
Q ss_pred CeEEEEEeCCcEEEeCCc
Q 001361 367 HHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 367 ~hs~aLT~dG~Vy~wG~n 384 (1092)
.|++++. +|+||.+|..
T Consensus 114 ~~~~~~~-~~~iyv~GG~ 130 (308)
T 1zgk_A 114 RIGVGVI-DGHIYAVGGS 130 (308)
T ss_dssp TCEEEEE-TTEEEEECCE
T ss_pred ccEEEEE-CCEEEEEcCC
Confidence 4555554 8999999954
No 208
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=48.46 E-value=2.6e+02 Score=29.29 Aligned_cols=109 Identities=9% Similarity=-0.093 Sum_probs=60.3
Q ss_pred CEEEEEecCc------eEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeC---CCeEEEEEeCC
Q 001361 306 DVQNIACGGR------HAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACG---EHHTCAVTLSG 376 (1092)
Q Consensus 306 ~I~~Ia~G~~------hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G---~~hs~aLT~dG 376 (1092)
.|..++.... ..+.-..+|.|..|-...... ...+. .....|..|+.. ....+....+|
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg 138 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-----------IKHYV-GHGNAINELKFHPRDPNLLLSVSKDH 138 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-----------EEEEE-SCCSCEEEEEECSSCTTEEEEEETTS
T ss_pred cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-----------eeeec-CCCCcEEEEEECCCCCCEEEEEeCCC
Confidence 4666655433 455567889999996433111 11111 123467777764 34555667789
Q ss_pred cEEEeCCccCCCCccCCCCCcceecceeecC-CCCCCcEEEEEeCC--CeEEEEEcCCcEEEeecC
Q 001361 377 DMYTWGGSNCNFGLLGHGNEMSLWLPKKLNG-PLEGIHVSSVSCGP--WHTAVVTSAGQLFTFGDG 439 (1092)
Q Consensus 377 ~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~-~l~~~~I~~IscG~--~Ht~aLt~dG~Vy~wG~N 439 (1092)
.|+.|-... + .. ...+.. ......|..++... .+.+....+|.|+.|-..
T Consensus 139 ~i~iwd~~~---~-------~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 139 ALRLWNIQT---D-------TL---VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp CEEEEETTT---T-------EE---EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred eEEEEEeec---C-------eE---EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 999996441 1 00 111100 11234577777653 355566678999999654
No 209
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=47.72 E-value=2.3e+02 Score=30.10 Aligned_cols=16 Identities=19% Similarity=0.540 Sum_probs=12.3
Q ss_pred CeEEEEEcCCcEEEeec
Q 001361 422 WHTAVVTSAGQLFTFGD 438 (1092)
Q Consensus 422 ~Ht~aLt~dG~Vy~wG~ 438 (1092)
.|++++ .+|+||.+|-
T Consensus 151 ~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 151 GHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp SCEEEE-ETTEEEEECC
T ss_pred ccEEEE-ECCEEEEEcC
Confidence 466666 6889999983
No 210
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=47.34 E-value=1.2e+02 Score=28.75 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=16.6
Q ss_pred hhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 001361 861 DAKRTSEEVIKLRAQV-------EELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 861 ~l~~~~qev~~l~~qv-------~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
++++..+|+.+|+... ..|..+...+..|...+..+++
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~ 58 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555533 2333333444444444444444
No 211
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=47.23 E-value=73 Score=36.50 Aligned_cols=23 Identities=17% Similarity=0.040 Sum_probs=10.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 001361 862 AKRTSEEVIKLRAQVEELTRKSQ 884 (1092)
Q Consensus 862 l~~~~qev~~l~~qv~~L~~~~~ 884 (1092)
+++.++|+.++-.||++|+...+
T Consensus 36 V~~~l~~LE~~l~elsn~ts~v~ 58 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIE 58 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 212
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=46.99 E-value=77 Score=32.14 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~ 923 (1092)
.+|+..|..|++...++.+.+..+|+.++.+....-..-+.|.+-...-++.+.-||-
T Consensus 26 ~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTG 83 (190)
T 4emc_A 26 VNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCN 83 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccC
Confidence 3444444444444444444444444444444433333333444444556666666665
No 213
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.96 E-value=41 Score=39.16 Aligned_cols=53 Identities=11% Similarity=0.101 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
.+++...+.+++.|+++-+.++.+|++..++++| |++..|.++.|=.-+|+.|
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 434 IRDWDMYQHKETQLAEENARLKKLNGEADLALAS--------------ANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh--------------cccHHHHHHHHHHHHHHhc
Confidence 4555555555666666555555666655555555 6666777777766666654
No 214
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=46.54 E-value=34 Score=40.47 Aligned_cols=48 Identities=6% Similarity=0.190 Sum_probs=34.8
Q ss_pred Ccchhhhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 855 PKIVVDDAKRT------SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALA 902 (1092)
Q Consensus 855 ~~~~~~~l~~~------~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~ 902 (1092)
++.+.+.|+++ +.+++.|-.+-..|..+.|.+..+.-...|++-.++.
T Consensus 16 ~~~v~~~~~~R~~~~~~vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~ 69 (522)
T 3vbb_A 16 PALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMK 69 (522)
T ss_dssp HHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555667766 6788888888888888888888888777777766543
No 215
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=46.24 E-value=60 Score=25.99 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 871 KLRAQVEELTRKSQLQEIELERTTRQL 897 (1092)
Q Consensus 871 ~l~~qv~~L~~~~~~~~~ei~~~~~~~ 897 (1092)
.|++|+..|..+=+.+...|++++.++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el 39 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQL 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665544444444433333
No 216
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=45.91 E-value=53 Score=37.52 Aligned_cols=84 Identities=18% Similarity=0.255 Sum_probs=49.4
Q ss_pred EEEecCCCceeEeEEEeCCCCeEEEecC-Ccc-----ceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCceeE
Q 001361 29 LKYGRRGKPKFCPFRLANDESILIWISG-KEE-----KHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDRSLD 102 (1092)
Q Consensus 29 ~K~~~~~kp~~r~f~L~~d~~~l~W~~~-k~~-----~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~rsLD 102 (1092)
.|+..+ +.+.|+|.|=.| .|+.... +.. ..|+|+++.=.. ........+|.|...++++-
T Consensus 251 ~~~~~~-~~~~r~~fLF~d--~Ll~~k~~~~~~y~~k~~i~L~~l~v~~-----------~~~~~~~~~f~i~~~~~~~~ 316 (434)
T 3mpx_A 251 MKVTGK-NRRPRHLFLMND--VLLYTYPQKDGKYRLKNTLAVANMKVSR-----------PVMEKVPYALKIETSESCLM 316 (434)
T ss_dssp EEEETT-EEEEEEEEEESS--EEEEEEECTTSCEEEEEEEEC-----CC-----------CCCTTSCSEEEEECSSCEEE
T ss_pred EEEeCC-CceEEEEEEECC--EEEEEEecCCCeEEEEEEEEcCCcEEEe-----------cCCCCCCeeEEEecCCeEEE
Confidence 344433 467888999888 4555442 221 234554432110 01112356888866678999
Q ss_pred EEeCCHHHHHHHHHHHHHHHHccc
Q 001361 103 LICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 103 Lia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
|.|.++++.+.|+..|+..|....
T Consensus 317 l~a~s~~ek~~W~~~i~~ai~e~~ 340 (434)
T 3mpx_A 317 LSASSCAERDEWYGCLSRALPEDY 340 (434)
T ss_dssp EECSSHHHHHHHHHHHHHC-----
T ss_pred EecCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997643
No 217
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.31 E-value=63 Score=31.09 Aligned_cols=31 Identities=26% Similarity=0.240 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 898 KEALAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 898 ~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
+||-.|++++-..+-++++=.+.|..||+|-
T Consensus 85 eEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~ 115 (135)
T 2e7s_A 85 DEANNLVADARMEKYAIEILNKRLTEQLREK 115 (135)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555444444444444555555443
No 218
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=45.25 E-value=93 Score=25.19 Aligned_cols=18 Identities=6% Similarity=-0.047 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001361 875 QVEELTRKSQLQEIELER 892 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~ 892 (1092)
++..++...+....++..
T Consensus 20 ~~~~~~~~~~~~k~~~~~ 37 (60)
T 3htk_A 20 KCSLKTDEFLKAKEKINE 37 (60)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444333333333
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=45.09 E-value=4.7e+02 Score=31.32 Aligned_cols=231 Identities=10% Similarity=-0.011 Sum_probs=111.3
Q ss_pred CEEEEEec--CceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEe--CCCeEEEEEeCCcEEEe
Q 001361 306 DVQNIACG--GRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVAC--GEHHTCAVTLSGDMYTW 381 (1092)
Q Consensus 306 ~I~~Ia~G--~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~--G~~hs~aLT~dG~Vy~w 381 (1092)
.|..|+.. +...++-..+|.|..|-...... ...+.. ....|..++. .....++.+.+|.|+.|
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-----------VRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------EEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----------EEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 46666554 33445556789999996433111 111111 1234555543 33445556678999999
Q ss_pred CCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCCC--eEEEEEcCCcEEEeecCCCcccCCCCCcccccceeee
Q 001361 382 GGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPW--HTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVD 459 (1092)
Q Consensus 382 G~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~--Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~ 459 (1092)
-... .. ....+.. ....|..++.... +.+..+.+|.|..|-...... ....+.
T Consensus 83 ~~~~--~~-----------~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~----------~~~~~~ 137 (814)
T 3mkq_A 83 NYNT--GE-----------KVVDFEA--HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA----------LEQTFE 137 (814)
T ss_dssp ETTT--CC-----------EEEEEEC--CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE----------EEEEEE
T ss_pred ECCC--Cc-----------EEEEEec--CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce----------EEEEEc
Confidence 6441 10 0111111 1234666665443 455556788888886332111 011111
Q ss_pred cCCCCeEEEEecCC-c-eEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEe--
Q 001361 460 SLKGLRTVRAACGV-W-HTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSC-- 535 (1092)
Q Consensus 460 ~l~~~~I~~VacG~-~-ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~-- 535 (1092)
.....|..++... . ..++.. ..+|.|+.|-..... . ...+.......+..++.
T Consensus 138 -~~~~~v~~~~~~p~~~~~l~~~-----------~~dg~v~vwd~~~~~------~-----~~~~~~~~~~~v~~~~~~~ 194 (814)
T 3mkq_A 138 -GHEHFVMCVAFNPKDPSTFASG-----------CLDRTVKVWSLGQST------P-----NFTLTTGQERGVNYVDYYP 194 (814)
T ss_dssp -CCSSCEEEEEEETTEEEEEEEE-----------ETTSEEEEEETTCSS------C-----SEEEECCCTTCCCEEEECC
T ss_pred -CCCCcEEEEEEEcCCCCEEEEE-----------eCCCeEEEEECCCCc------c-----eeEEecCCCCCEEEEEEEE
Confidence 1122455555443 2 233332 258999999643211 0 11111111123333333
Q ss_pred --eCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEEEcCC--EEEEEEcCCeEEEEeCCC
Q 001361 536 --GHSLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDY--HVAVLTSRTEVYTWGKGA 608 (1092)
Q Consensus 536 --G~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~--HslaLT~dG~Vy~WG~n~ 608 (1092)
.....++-..+|.|+.|-.... .....+.. ....|..++.... ..+.-..+|.|+.|-...
T Consensus 195 ~~~~~~l~~~~~dg~i~~~d~~~~----------~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 195 LPDKPYMITASDDLTIKIWDYQTK----------SCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp STTCCEEEEECTTSEEEEEETTTT----------EEEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred CCCCCEEEEEeCCCEEEEEECCCC----------cEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 3345556667889999964221 11111211 2234666665543 345556789999996543
No 220
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=44.94 E-value=1.5e+02 Score=25.64 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 930 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e 930 (1092)
......+..++....++....+.||..+++|++- .-+|..+ +.|-++..+.+|.+...
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~----lE~eld~---~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKG----TEDELDK---YSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5555666667777777777888888888777764 3356665 66667777777766443
No 221
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=44.77 E-value=3.4e+02 Score=29.50 Aligned_cols=234 Identities=12% Similarity=0.016 Sum_probs=0.0
Q ss_pred EEecCceEEEE---EcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEe---CCCeEEEEEeCCcEEEeCC
Q 001361 310 IACGGRHAALV---TKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVAC---GEHHTCAVTLSGDMYTWGG 383 (1092)
Q Consensus 310 Ia~G~~hs~~L---t~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~---G~~hs~aLT~dG~Vy~wG~ 383 (1092)
+++...+.+++ ..+|.|+.|-.+..|++ ..+...-.-....|..++. .....+.-..||.|..|-.
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~--------~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~ 111 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRV--------DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI 111 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEEC--------CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEEC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCC--------CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEc
Q ss_pred ccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCCC---eEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeec
Q 001361 384 SNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPW---HTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDS 460 (1092)
Q Consensus 384 n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~---Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~ 460 (1092)
. ..+...............-.. |..|+.... ..+.-..+|.|+.| .......+..
T Consensus 112 ~--~~~~~~~~~~~~~~~~~h~~~------v~~~~~~p~~~~~l~s~~~dg~i~iw--------------d~~~~~~~~~ 169 (402)
T 2aq5_A 112 P--DGGLVLPLREPVITLEGHTKR------VGIVAWHPTAQNVLLSAGCDNVILVW--------------DVGTGAAVLT 169 (402)
T ss_dssp C--TTCCSSCBCSCSEEEECCSSC------EEEEEECSSBTTEEEEEETTSCEEEE--------------ETTTTEEEEE
T ss_pred c--CCCCccccCCceEEecCCCCe------EEEEEECcCCCCEEEEEcCCCEEEEE--------------ECCCCCccEE
Q ss_pred C----CCCeEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEe-cccCCCCeEEEEe
Q 001361 461 L----KGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCV-AALVEPNFCQVSC 535 (1092)
Q Consensus 461 l----~~~~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V-~~l~~~~I~~Ia~ 535 (1092)
+ ....|..++....-..+++ ...+|.|+.| +.........+ .......+..+..
T Consensus 170 ~~~~~~~~~v~~~~~~~~~~~l~~----------~~~d~~i~iw-----------d~~~~~~~~~~~~~~~~~~~~~~~~ 228 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDWSRDGALICT----------SCRDKRVRVI-----------EPRKGTVVAEKDRPHEGTRPVHAVF 228 (402)
T ss_dssp ECTTTCCSCEEEEEECTTSSCEEE----------EETTSEEEEE-----------ETTTTEEEEEEECSSCSSSCCEEEE
T ss_pred EecCCCCCceEEEEECCCCCEEEE----------EecCCcEEEE-----------eCCCCceeeeeccCCCCCcceEEEE
Q ss_pred eCcEEEEEec-----CCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEEEcCC--EEEEEEc-CCeEEEE
Q 001361 536 GHSLTVALTT-----TGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDY--HVAVLTS-RTEVYTW 604 (1092)
Q Consensus 536 G~~htlaLt~-----dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~--HslaLT~-dG~Vy~W 604 (1092)
..+..++++. +|.|+.|-.....+ |...........|..++.... ..++... +|.|+.|
T Consensus 229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~ 295 (402)
T 2aq5_A 229 VSEGKILTTGFSRMSERQVALWDTKHLEE----------PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF 295 (402)
T ss_dssp CSTTEEEEEEECTTCCEEEEEEETTBCSS----------CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred cCCCcEEEEeccCCCCceEEEEcCccccC----------CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEE
No 222
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=44.74 E-value=91 Score=24.64 Aligned_cols=44 Identities=32% Similarity=0.397 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001361 872 LRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 922 (1092)
Q Consensus 872 l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~ 922 (1092)
|-.||+.|+.+--.+..||+.-..++-. -.-|+.- .|||+|-|.
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS~~lsk----LE~ets~---mKevlk~lq 51 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNSNHLTK----LETEASN---MKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHH----HHhhhhh---HHHHHHHHc
Confidence 4445555555444444444443333321 1123332 678877664
No 223
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.38 E-value=30 Score=41.40 Aligned_cols=30 Identities=37% Similarity=0.427 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTTRQL 897 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~ 897 (1092)
|+.+++.++..|+++.++++..++..++++
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i 486 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEI 486 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444333333
No 224
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=44.33 E-value=48 Score=43.41 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 001361 867 EEVIKLRAQV 876 (1092)
Q Consensus 867 qev~~l~~qv 876 (1092)
+|+.+|+.++
T Consensus 864 ~eL~el~~~L 873 (1184)
T 1i84_S 864 EELQRTKERQ 873 (1184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333344333
No 225
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=43.79 E-value=54 Score=28.81 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
.+|-.+|+.+|+. ++.||..+++..++
T Consensus 45 L~EN~~Lh~~ie~-------l~eEi~~lk~en~e 71 (83)
T 1uii_A 45 LKENEKLHKEIEQ-------KDNEIARLKKENKE 71 (83)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 4455555544444 44444444444444
No 226
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=43.73 E-value=20 Score=37.56 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCceeEEEeCCHHHHHHHHHHHH
Q 001361 88 EYQSFSLIYNDRSLDLICKDKDEAEVWFTGLK 119 (1092)
Q Consensus 88 ~~~~FSiiy~~rsLDLia~~~~e~~~Wv~gL~ 119 (1092)
...+|.|+..+|++.|.|++++|++.|+..|+
T Consensus 194 ~~~~f~iit~~r~~~~~a~s~~e~~~Wi~~lq 225 (228)
T 3tfm_A 194 RPNSFVIITANRVLHCNADTPEEMHHWITLLQ 225 (228)
T ss_dssp CTTEEEEEETTEEEEEECSSHHHHHHHHHHHC
T ss_pred CCCcEEEEeCCceEEEEcCCHHHHHHHHHHHh
Confidence 56799999999999999999999999999875
No 227
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=43.69 E-value=35 Score=37.06 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=30.9
Q ss_pred CCCeEEEEEcC-ceeEEEeCCHHHHHHHHHHHHHHHH
Q 001361 88 EYQSFSLIYND-RSLDLICKDKDEAEVWFTGLKALIS 123 (1092)
Q Consensus 88 ~~~~FSiiy~~-rsLDLia~~~~e~~~Wv~gL~~Li~ 123 (1092)
...+|.|...+ +..=|.|++.+|++.|+..|+..+.
T Consensus 88 Kk~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~~ 124 (279)
T 3a8n_A 88 KDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACA 124 (279)
T ss_dssp SCSCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 35689998855 7777999999999999999998776
No 228
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=43.57 E-value=50 Score=28.84 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 875 QVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
++...+.+++.+..||++++++++|
T Consensus 46 kL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555554
No 229
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=43.53 E-value=1.2e+02 Score=26.04 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHh
Q 001361 875 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 930 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e 930 (1092)
++..|+.+-..++..|+.+++.++++-. +........|-++..|.-.|-||.|
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~---~q~~~~~Elk~~~e~Ld~KI~eL~e 60 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQS---EQDAFRSNLKTLLEILDGKIFELTE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444444444444455555555444210 1111224456666666666666653
No 230
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=43.44 E-value=1.3e+02 Score=27.21 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
..+..+|+.++..|..+.+.++.+++....-++
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~ 39 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALE 39 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666554444
No 231
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=43.24 E-value=1.1e+02 Score=29.31 Aligned_cols=83 Identities=12% Similarity=0.126 Sum_probs=50.7
Q ss_pred CCceeEeEEEeC-CCC-eEEEe-c----CCccceEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEcCc-eeEEEeC
Q 001361 35 GKPKFCPFRLAN-DES-ILIWI-S----GKEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYNDR-SLDLICK 106 (1092)
Q Consensus 35 ~kp~~r~f~L~~-d~~-~l~W~-~----~k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~~r-sLDLia~ 106 (1092)
.|.|-|+..... ... .++++ . +|.+-.|.++.|.|||+=..=+ -++ .+.-|-|=..+. -.=|.|.
T Consensus 41 ~W~k~RLvL~k~g~G~~y~LEfy~PPkssKpK~~i~cs~I~EVR~tt~LE------mPD-~~nTFVlK~~n~~eyi~ea~ 113 (136)
T 1v5m_A 41 QWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAIIEVRTTMPLE------MPE-KDNTFVLKVENGAEYILETI 113 (136)
T ss_dssp CCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSCEETTTCCBCCCCCCSS------SCC-CTTEECCBCTTSCBEEEECS
T ss_pred chhheeeEEEEccCCCceEEEEecCCcccCCccccchhhhhhhhhccccc------cCC-ccceEEEEecCCcEEEEEcC
Confidence 455666655554 233 45443 2 3566679999999999743321 011 233444433333 3447899
Q ss_pred CHHHHHHHHHHHHHHHHc
Q 001361 107 DKDEAEVWFTGLKALISR 124 (1092)
Q Consensus 107 ~~~e~~~Wv~gL~~Li~~ 124 (1092)
|..+.+.|+.-|+.=+..
T Consensus 114 d~~q~~sWla~Ir~C~~~ 131 (136)
T 1v5m_A 114 DSLQKHSWVADIQGCVDS 131 (136)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcCC
Confidence 999999999999877654
No 232
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=43.19 E-value=59 Score=29.26 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=11.8
Q ss_pred HhhhhhhhHHHHHHHHHHHHH
Q 001361 906 EETAKCRAAKDVIKSLTAQLK 926 (1092)
Q Consensus 906 ee~~k~~~ake~ik~l~~qlk 926 (1092)
||.+++++..|-|..|.+|.+
T Consensus 30 e~~~q~~~~~E~i~vLk~Qv~ 50 (94)
T 3jsv_C 30 EEAEQHKIVMETVPVLKAQAD 50 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566655555543
No 233
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=42.53 E-value=43 Score=27.88 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQL 897 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~ 897 (1092)
.+++..|..+++.|+++-..+..+|+.+++.+
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555544443
No 234
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=42.44 E-value=68 Score=34.16 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 878 ELTRKSQLQEIELERTTRQLKEAL 901 (1092)
Q Consensus 878 ~L~~~~~~~~~ei~~~~~~~~ea~ 901 (1092)
+|.++.+.+..+++.+..++.|+|
T Consensus 94 aL~kEie~~~~~i~~lE~eile~~ 117 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENLQ 117 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 235
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=41.63 E-value=3.3e+02 Score=28.46 Aligned_cols=109 Identities=11% Similarity=0.072 Sum_probs=60.8
Q ss_pred CCCEEEEEecCc-----eEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCC--CeEEEEEeCC
Q 001361 304 VLDVQNIACGGR-----HAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGE--HHTCAVTLSG 376 (1092)
Q Consensus 304 ~~~I~~Ia~G~~-----hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~--~hs~aLT~dG 376 (1092)
...|..|+.... ..+.-..||.|..|-....++. ....+.. ....|..++... .+.+....||
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---------IPKAQQM-HTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---------EEEEEEE-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---------eEEEecc-ccCCEEEEEECcCCCEEEEEcCCC
Confidence 346888887754 4444567899999975442211 1112221 234577777643 3555567789
Q ss_pred cEEEeCCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEe--CCC--eEEEEEcCCcEEEeec
Q 001361 377 DMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSC--GPW--HTAVVTSAGQLFTFGD 438 (1092)
Q Consensus 377 ~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~Isc--G~~--Ht~aLt~dG~Vy~wG~ 438 (1092)
.|..|-... ++ ...+.. ....|..++. ... +.+....+|.|+.|-.
T Consensus 109 ~v~iwd~~~---~~-----------~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 109 TAKMWDLSS---NQ-----------AIQIAQ--HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEEETTT---TE-----------EEEEEE--CSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred cEEEEEcCC---CC-----------ceeecc--ccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 999996441 11 011111 2335777765 333 3444566899999953
No 236
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=41.61 E-value=70 Score=41.37 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001361 874 AQVEELTRKSQLQEIELERTTR 895 (1092)
Q Consensus 874 ~qv~~L~~~~~~~~~ei~~~~~ 895 (1092)
++|.+|+++.+.++.+++++.+
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~k 1005 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQT 1005 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 237
>2qup_A BH1478 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Bacillus halodurans}
Probab=41.51 E-value=73 Score=31.06 Aligned_cols=84 Identities=13% Similarity=0.177 Sum_probs=58.3
Q ss_pred CCCCcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhhhH-----------HHH
Q 001361 852 LASPKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQE--IELERTTRQLKEALAVAGEETAKCRAA-----------KDV 917 (1092)
Q Consensus 852 ~~~~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~--~ei~~~~~~~~ea~~~a~ee~~k~~~a-----------ke~ 917 (1092)
.+|+....+.-.+. .+|+.+|-.++...-+++...- .+|.++++-|++=+..|...+=+.+.. =.+
T Consensus 25 ~~F~~~l~~~~~~~~~e~L~~ll~~I~~~G~rL~~~~t~~~l~~YK~lVk~Fl~~~v~~~~~l~~~~~~~r~gr~r~y~i 104 (145)
T 2qup_A 25 VSFSEVMGKQRDEKAYERLQALMSKIDDQGKLLSETRTIEELRKYKELVKEFVGDAVELGLRLEERRGFNRRGRTKIYKI 104 (145)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---CCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHheehhhcccCCCCCeeEEee
Confidence 45666655543333 5777777777777666655443 789999999998887777655443322 367
Q ss_pred HHHHHHHHHHHHhhCCCc
Q 001361 918 IKSLTAQLKDMAEMLPVG 935 (1092)
Q Consensus 918 ik~l~~qlk~~~e~lp~~ 935 (1092)
||-+..+|.+|++.|-.+
T Consensus 105 V~~ID~kL~eLt~~ll~~ 122 (145)
T 2qup_A 105 VKEVDRKLLDLTDAVLAK 122 (145)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred hhHHhHHHHHHHHHHHHh
Confidence 999999999999987544
No 238
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=41.31 E-value=33 Score=28.61 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
.+.+..|..+|+.|+.+-..+..||..++.++.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888888888888888888888888877664
No 239
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=41.25 E-value=3.9e+02 Score=29.26 Aligned_cols=216 Identities=11% Similarity=0.004 Sum_probs=110.9
Q ss_pred EEeCCCeEEEEEeCCcEEEeCCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCC-----CeEEEEEcCCcEEEe
Q 001361 362 VACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGP-----WHTAVVTSAGQLFTF 436 (1092)
Q Consensus 362 Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~-----~Ht~aLt~dG~Vy~w 436 (1092)
.+....+.+++|+.|++|..--. ..-..+... .-......+. ..++.+|+.+.+.. ...+++|.+|.+.-.
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~--~lp~~~r~~-~G~~i~~~l~-l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~ 124 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAY--DLPEASRTA-RGQHVANLLA-FQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKS 124 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGG--GSCBCCSSS-CCEEHHHHTT-CCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEE
T ss_pred EeCCCCEEEEEeCCCeEEEEEHH--HCcCCCccC-CCEEHHHccC-CCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEe
Confidence 45567778889999999987533 111111110 0011111122 23577898887654 468889999998877
Q ss_pred ecCCCcccCCCCCccccccee-eecCCCCeEEE--EecCCceEEEEEEeeecCCCCccCCCCeEEEecCC--CCCCcCCC
Q 001361 437 GDGTFGVLGHGDRISVSTPRE-VDSLKGLRTVR--AACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDG--DRGRLGHG 511 (1092)
Q Consensus 437 G~N~~GQLG~g~~~~~~~P~~-V~~l~~~~I~~--VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n--~~GQLG~g 511 (1092)
-...|-.... .-.. +..-.+-.++. +..+..+.++++ ++|++|.+--. +--..|..
T Consensus 125 ~l~~~~~~~r-------~G~~~i~lke~D~lv~~~~~~~~d~ill~T------------~~G~~~rf~~~~~eip~~gr~ 185 (327)
T 3uc1_A 125 KLTDFDSNRS-------GGIVAVNLRDNDELVGAVLCSAGDDLLLVS------------ANGQSIRFSATDEALRPMGRA 185 (327)
T ss_dssp EGGGGCCCCS-------SCEESCBCCTTCCEEEEEEECTTCEEEEEE------------TTSEEEEEECCTTTSCCCCTT
T ss_pred EHHHhhcccc-------CceEEEEECCCCEEEEEEEecCCCEEEEEE------------CCCeEEEEECcccccCcCCcC
Confidence 6444322110 0000 11111223333 334555666665 79999988766 43333332
Q ss_pred CCCcceeeEEecccCCCCeEEEEee--CcEEEEEecCCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEE--E
Q 001361 512 DKEARLVPTCVAALVEPNFCQVSCG--HSLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIA--C 587 (1092)
Q Consensus 512 ~~~~~~~P~~V~~l~~~~I~~Ia~G--~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia--~ 587 (1092)
..-.. .+....+..|+.+..- ..+.+++|++|.+.-.--.+|-..+.+.. ...-..+. -.+..++.+. .
T Consensus 186 a~Gv~----~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~-G~~~~~l~--~~~d~lv~~~~~~ 258 (327)
T 3uc1_A 186 TSGVQ----GMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGK-GVLTVMYD--RRRGRLVGALIVD 258 (327)
T ss_dssp SBCEE----SSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSC-CEESSCCC--TTTCSEEEEEEEC
T ss_pred CCCee----eecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCC-cEEEEEec--CCCCeEEEEEEeC
Confidence 22111 1222234567766554 34677888999777664443322211110 00000000 0022344333 3
Q ss_pred cCCEEEEEEcCCeEEEEeCC
Q 001361 588 GDYHVAVLTSRTEVYTWGKG 607 (1092)
Q Consensus 588 G~~HslaLT~dG~Vy~WG~n 607 (1092)
+..+.+++|++|++.-+-..
T Consensus 259 ~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 259 DDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp TTCEEEEEEGGGCEEEEEGG
T ss_pred CCccEEEEcCCCeEEEEehh
Confidence 56789999999999888443
No 240
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=41.01 E-value=49 Score=38.14 Aligned_cols=65 Identities=15% Similarity=0.347 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhhHHHHHHHHHHHHHHHHhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEE----TAKCRAAKDVIKSLTAQLKDMAEM 931 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee----~~k~~~ake~ik~l~~qlk~~~e~ 931 (1092)
+.+++.|-.+-..|..+.+.+..+..+..|++..+.. .+|| -++.+..|+-||.|..+++++.++
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKR-EGKDTTEIQNRVKELKEEIDRLEEELRKVEEE 97 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGS-SCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666667777777777666666666654211 1122 233444556666666655555443
No 241
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=40.72 E-value=44 Score=30.87 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL 901 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~ 901 (1092)
.++.+|++|++.|.++-+.+|..|+.+++++++..
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35778899999999998888888888888877743
No 242
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=40.65 E-value=1.5e+02 Score=29.08 Aligned_cols=63 Identities=10% Similarity=0.108 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCC
Q 001361 870 IKLRAQVEELTRKSQLQEIELERTTRQLKE----------------ALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLP 933 (1092)
Q Consensus 870 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e----------------a~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp 933 (1092)
..|++++..|.++|++++.+.++.-+.++. .-.-...|-++ -.|-++-|..||+.+- +||
T Consensus 32 ~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~---r~e~k~~l~~ql~qv~-~L~ 107 (150)
T 4dci_A 32 REISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSE---LEEQKRNLLQQQAQVR-ELE 107 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh-cCC
Confidence 467888999999999999988887544443 11223334444 4566778888888874 899
Q ss_pred Ccc
Q 001361 934 VGA 936 (1092)
Q Consensus 934 ~~~ 936 (1092)
-|.
T Consensus 108 lGs 110 (150)
T 4dci_A 108 MDQ 110 (150)
T ss_dssp TTC
T ss_pred CcC
Confidence 884
No 243
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=40.63 E-value=90 Score=29.49 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 875 QVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
-|..|+.++-+++.||...++..++
T Consensus 41 ~v~ql~~~i~~Le~eL~e~r~~~q~ 65 (120)
T 3i00_A 41 VVLQLKGHVSELEADLAEQQHLRQQ 65 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777666555
No 244
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=40.61 E-value=41 Score=31.37 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 866 SEEVIKLRAQVEEL--TRKSQLQEIELERTTRQLKEALA-VAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 866 ~qev~~l~~qv~~L--~~~~~~~~~ei~~~~~~~~ea~~-~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
.+|...+.+++..+ +...+....+|+++++-|.+|.. |..= ..|.+-+.|+.|+.+|.+...+|-|
T Consensus 41 ~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp~Y---D~R~~q~~i~~L~~~l~e~r~~l~P 109 (111)
T 2l3l_A 41 ARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLAAY---DLRQGQEALARLQAALAERRRGLQP 109 (111)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSCHH---HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhccHH---HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 66677777776665 66788899999999999988643 2222 3567889999999999999887765
No 245
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=40.37 E-value=63 Score=29.54 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELER 892 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~ 892 (1092)
.+||..|+.+...|+++.+.++.+|++
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999987
No 246
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=39.38 E-value=85 Score=40.61 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 875 QVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
|.++++.+...++.|++++++++++
T Consensus 978 e~~~~~~~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 978 EAKNATNRVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555554444
No 247
>2rrf_A Zinc finger FYVE domain-containing protein 21; zfyve21, PH, unknown function; NMR {Homo sapiens}
Probab=39.12 E-value=2.7e+02 Score=26.75 Aligned_cols=106 Identities=18% Similarity=0.325 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCeE-EEEecCCCceeEeEEEeCCCCeEEEecCCccceEEccceeecccCCCChhhhcCCCCCCCCCeEE
Q 001361 15 IELAITALKKGAHL-LKYGRRGKPKFCPFRLANDESILIWISGKEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFS 93 (1092)
Q Consensus 15 i~~~l~~L~~Gt~l-~K~~~~~kp~~r~f~L~~d~~~l~W~~~k~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FS 93 (1092)
-|.-|++|..|+.| +.++..-++.....+|+.|-+.|.-.... .-.|.|+.|..|++=..- |-- ..-..-..-|.
T Consensus 11 yDKqLKvLl~GatF~Vs~~~sek~e~~vCrLS~nhR~L~ldgds-h~eIels~I~~vqiL~eg--~~~-ggg~~rasGm~ 86 (141)
T 2rrf_A 11 YDKQLKVLLSGATFLVTFGNSEKPETMTCRLSNNQRYLFLDGDS-HYEIEIVHISTVQILTEG--FPP-GGGNARATGMF 86 (141)
T ss_dssp HHHHHHHHHHCEEEEECCSSCCSCEEEEEEECTTSSEEEEESSS-EEEEETTTCCCEECCCCS--SCS-SSSSCCCSCCE
T ss_pred HHHHHHHHhCCceEEEeccCCCCCceEEEEecCCeeEEEEcCCC-CCcEEeeeeeEEEEeccC--CCC-CCCcceeeEEE
Confidence 46678999999887 46788888999999999997777776544 566888888776642211 100 01112234566
Q ss_pred EEEcC------ceeE-EEeCC----HHHHHHHHHHHHHHHHc
Q 001361 94 LIYND------RSLD-LICKD----KDEAEVWFTGLKALISR 124 (1092)
Q Consensus 94 iiy~~------rsLD-Lia~~----~~e~~~Wv~gL~~Li~~ 124 (1092)
|=|+. .-|- +++++ +..+-.|+.++..-+.-
T Consensus 87 l~Yk~~g~~~~~ql~lt~~~d~~~~kk~s~aWlaAm~KA~Kl 128 (141)
T 2rrf_A 87 LQYTVPGTEGVTQLKLTVVEDVTVGRRQAVAWLVAMHKAAKL 128 (141)
T ss_dssp EEECCTTSSSCEEEEEECCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCccceeEEEEeeccccCcchhhhHHHHHHHHHHHHH
Confidence 88854 2233 44555 66888899998765543
No 248
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=39.00 E-value=42 Score=25.08 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=19.8
Q ss_pred hhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 858 VVDDAKRT---SEEVIKLRAQVEELTRKSQLQEIELERT 893 (1092)
Q Consensus 858 ~~~~l~~~---~qev~~l~~qv~~L~~~~~~~~~ei~~~ 893 (1092)
+-..||+. -+|+..|.+++..|+.++..+..++|.+
T Consensus 8 elqalkkegfspeelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 8 ELQALKKEGFSPEELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444544 5666666666666666655555555543
No 249
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=38.74 E-value=1.6e+02 Score=27.91 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=25.2
Q ss_pred hhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 859 VDDAKRT----SEEVIKLRAQVEELTRKSQLQEIELER 892 (1092)
Q Consensus 859 ~~~l~~~----~qev~~l~~qv~~L~~~~~~~~~ei~~ 892 (1092)
+|-|+|+ -.|+.+||++.+.+.++.+.-+..|.+
T Consensus 48 VDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkr 85 (167)
T 4gkw_A 48 VDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKR 85 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 4667777 789999999888888777766655544
No 250
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=38.74 E-value=36 Score=24.46 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
|.+|...|+.|..+-..++.|+.++++-+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 678888999999999999999998877553
No 251
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=38.60 E-value=1.6e+02 Score=25.05 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
|..+|+|-+.+.++... |+| .-++.|++|....|+.-..-.+++|+-|.-|.-++..|
T Consensus 11 l~eiRaQYE~ia~knr~-EaE-~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L 68 (77)
T 3trt_A 11 MRDVRQQYESVAAKNLQ-EAE-EWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSL 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHH-HHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666655421 111 13455666666666655555666666666555554443
No 252
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=38.41 E-value=15 Score=30.75 Aligned_cols=28 Identities=25% Similarity=0.763 Sum_probs=22.4
Q ss_pred ccccCCCCCcCCcccccccccccccceEEec
Q 001361 657 DQSMCSGCRIPFNFKRKRHNCYNCGLVYCHT 687 (1092)
Q Consensus 657 d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~ 687 (1092)
....|..|+...+++ .-.|+ ||..||..
T Consensus 14 ~~~rC~~C~kkvgl~--~f~Cr-Cg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT--GFMCR-CGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTT--CEECS-SSCEECTT
T ss_pred cCCcChhhCCccCcc--CEEee-cCCEeccc
Confidence 447799999988876 46795 99999975
No 253
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.95 E-value=1.4e+02 Score=29.39 Aligned_cols=11 Identities=0% Similarity=0.232 Sum_probs=4.3
Q ss_pred hhhhhhhHHHH
Q 001361 859 VDDAKRTSEEV 869 (1092)
Q Consensus 859 ~~~l~~~~qev 869 (1092)
.|+|-.+.+|+
T Consensus 19 eD~L~~~R~el 29 (154)
T 2ocy_A 19 EEQLNKSLKTI 29 (154)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444433333
No 254
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=37.77 E-value=38 Score=24.52 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
|.|.+|...|+.|-.+-..++.|+.++++-+.
T Consensus 1 ~RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 1 MKVKQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 45778888899998888888889988877654
No 255
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=37.45 E-value=39 Score=24.43 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
|.|.+|...|+.|-++-..++.|+.+++.-+.+
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIXKLLXE 33 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 347888888999988888899999888876543
No 256
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.19 E-value=25 Score=28.37 Aligned_cols=32 Identities=9% Similarity=0.223 Sum_probs=24.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 858 VVDDAKRTSEEVIKLRAQVEELTRKSQLQEIELER 892 (1092)
Q Consensus 858 ~~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~ 892 (1092)
..+.| .+|+..||+++..|+++.+++..+|..
T Consensus 20 d~eaL---k~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 20 EIELL---RLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445 478888899999999998888888764
No 257
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=37.04 E-value=72 Score=32.57 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
.+|-.+|+.+|+. ++.||..+++..++
T Consensus 114 LeEN~~Lh~~ie~-------l~eEi~~LkeEn~e 140 (209)
T 2wvr_A 114 LKENEKLHKEIEQ-------KDNEIARLKKENKE 140 (209)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 5666666655555 44455555554444
No 258
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=36.82 E-value=84 Score=39.04 Aligned_cols=74 Identities=26% Similarity=0.521 Sum_probs=44.7
Q ss_pred CCCceeEeEEEeCCCCeEEEecCC---ccc-eEEccceeecccCCCChhhhcCCCCCCCCCeEEEEEc-------C-cee
Q 001361 34 RGKPKFCPFRLANDESILIWISGK---EEK-HLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYN-------D-RSL 101 (1092)
Q Consensus 34 ~~kp~~r~f~L~~d~~~l~W~~~k---~~~-~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSiiy~-------~-rsL 101 (1092)
+|..+..+|.|..+ .|.|+... +++ -++|+.++ +|-.... |- ....-|+|... + |+|
T Consensus 555 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~ 623 (772)
T 3zvr_A 555 KGGSKEYWFVLTAE--NLSWYKDDEEKEKKYMLSVDNLK-LRDVEKG--FM------SSKHIFALFNTEQRNVYKDYRQL 623 (772)
T ss_dssp ---CCEEEEEEESS--EEEEESSTTCCCEEEEEECTTEE-EEEC---------------CEEEEEEETTSSCSBTTBSEE
T ss_pred cCCCccceeecccc--ccccccchhhhcccccccccccc-cchhhhc--cc------cccccccccCCccccccchhhhh
Confidence 34566777888876 79999752 222 36775554 3333311 21 11245777663 3 799
Q ss_pred EEEeCCHHHHHHHHHHH
Q 001361 102 DLICKDKDEAEVWFTGL 118 (1092)
Q Consensus 102 DLia~~~~e~~~Wv~gL 118 (1092)
||.|.+.++.+.|...+
T Consensus 624 ~l~~~~~~~~~~~~~~~ 640 (772)
T 3zvr_A 624 ELACETQEEVDSWKASF 640 (772)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred hhhccccccchhhHHhh
Confidence 99999999999999854
No 259
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=36.56 E-value=82 Score=45.37 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 875 QVEELTRKSQLQEIELERTTRQLKEALAVA 904 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a 904 (1092)
||+.|+++++.++.+|++.+++.++.+...
T Consensus 1935 ~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1935 QVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888777777665443
No 260
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=36.42 E-value=89 Score=27.47 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELER 892 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~ 892 (1092)
.+|-.+|+.+|+.+......+..|.++
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~ 63 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655554443333333333
No 261
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=36.20 E-value=1.3e+02 Score=26.10 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 875 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
.+..|+.|.-.|+.-|+.+...|-+ --..|..|+.||+.|.+||..
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~--------------Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALAD--------------ARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444433 223456677777777777754
No 262
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=36.13 E-value=53 Score=29.44 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTT 894 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~ 894 (1092)
.++...|..++..|..+.+.+..|+.+++
T Consensus 47 ~~q~~~LE~e~~~L~~e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 47 VQQKHHLENEKTQLIQQVEQLKQEVSRLA 75 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 263
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=35.90 E-value=1.5e+02 Score=27.19 Aligned_cols=57 Identities=16% Similarity=0.331 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhhh--hhHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAG---EETAKC--RAAKDVIKSLTAQLKDMA 929 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~---ee~~k~--~~ake~ik~l~~qlk~~~ 929 (1092)
-.++++|+.++. ++|.+|-.+.+||++|..-+. +|.-|. .+=..+++.|-+.|.++.
T Consensus 34 M~~ieeLQ~Ei~-------~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLK 95 (107)
T 2k48_A 34 MSTLQELQENIT-------AHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELK 95 (107)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544 455566667777777655544 344332 233456666666555543
No 264
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=35.77 E-value=2.2e+02 Score=29.74 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=12.2
Q ss_pred CeEEEEEeCCcEEEeCCc
Q 001361 367 HHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 367 ~hs~aLT~dG~Vy~wG~n 384 (1092)
.|++++. +|+||.+|..
T Consensus 152 ~~~~~~~-~~~iyv~GG~ 168 (301)
T 2vpj_A 152 GAGLVVA-SGVIYCLGGY 168 (301)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred cceEEEE-CCEEEEECCC
Confidence 4555544 8999999854
No 265
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=35.75 E-value=64 Score=30.62 Aligned_cols=44 Identities=11% Similarity=0.229 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 922 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~ 922 (1092)
|+.+|..+...|++..+.+..+++.++.++.| .+.++|.|+.|.
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e-----------~~~~~e~l~~l~ 45 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISE-----------LEILEKTLSDIQ 45 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhcc
Confidence 35556666666666666666666666555554 555777777655
No 266
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=35.63 E-value=4.7e+02 Score=28.60 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=37.3
Q ss_pred CEEEEEec--CceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeecc--CCCcEEEEEeCCCeEEEEEeCCcEEEe
Q 001361 306 DVQNIACG--GRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDAL--KNINVELVACGEHHTCAVTLSGDMYTW 381 (1092)
Q Consensus 306 ~I~~Ia~G--~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l--~~~~I~~Ia~G~~hs~aLT~dG~Vy~w 381 (1092)
.|..|+.. +.+.+.-+.||.|..|-..... .+..+ ....|..++......+.-..++.++.|
T Consensus 149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~--------------~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~ 214 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--------------RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHH 214 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEcCCCc--------------EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEe
Confidence 46667654 3455555789999999654321 11111 123566666655555556667777777
Q ss_pred CC
Q 001361 382 GG 383 (1092)
Q Consensus 382 G~ 383 (1092)
-.
T Consensus 215 d~ 216 (420)
T 4gga_A 215 DV 216 (420)
T ss_dssp ET
T ss_pred ee
Confidence 43
No 267
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=35.58 E-value=2e+02 Score=26.00 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
......+..++..+.++++..+.+|..+++|++
T Consensus 22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq 54 (101)
T 3u59_A 22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 566777888899999999999999999999887
No 268
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=35.38 E-value=2.1e+02 Score=26.02 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
......+..++..+.+++++.+.||.-++++++
T Consensus 22 ~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~ 54 (101)
T 3u1c_A 22 LDRAEQAEADKKAAEERSKQLEDDIVQLEKQLR 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 566777888899999999999999999988887
No 269
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=35.17 E-value=76 Score=35.17 Aligned_cols=6 Identities=33% Similarity=1.415 Sum_probs=3.3
Q ss_pred HHHHhH
Q 001361 1061 WWAANR 1066 (1092)
Q Consensus 1061 ww~~n~ 1066 (1092)
||-.++
T Consensus 254 WWy~~C 259 (323)
T 1lwu_C 254 WWMNRC 259 (323)
T ss_dssp BCCSSS
T ss_pred CccCCC
Confidence 665544
No 270
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=34.94 E-value=1.9e+02 Score=28.45 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQ-------EIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~-------~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
+|-+.++..|+..|+.++..- +..++++.+.+...-.-...+-.|.++..+-+...-+.|..|
T Consensus 69 sqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~ 138 (155)
T 2efr_A 69 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEEL 138 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444555555444433 344444444444433333334444444444444444444444
No 271
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=34.50 E-value=1.5e+02 Score=31.56 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=12.7
Q ss_pred CeEEEEEeCCcEEEeCCc
Q 001361 367 HHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 367 ~hs~aLT~dG~Vy~wG~n 384 (1092)
.+..++..+++||.+|..
T Consensus 48 ~~~~~~~~~~~lyv~GG~ 65 (318)
T 2woz_A 48 NHSSIVTQQNQVYVVGGL 65 (318)
T ss_dssp SEEEEECSSSCEEEEESS
T ss_pred cceEEEEECCEEEEECCc
Confidence 344455678999999963
No 272
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.14 E-value=78 Score=30.47 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
+++...++.+...|.......+.|+.++..++.+
T Consensus 24 ~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~e 57 (135)
T 2e7s_A 24 IENYNQLKEDYNTLKRELSDRDDEVKRLREDIAK 57 (135)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5666666667777766666677777777666654
No 273
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=34.12 E-value=4.6e+02 Score=27.94 Aligned_cols=122 Identities=11% Similarity=0.097 Sum_probs=63.7
Q ss_pred CCEEEEEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCC---------CeEEEEEeC
Q 001361 305 LDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGE---------HHTCAVTLS 375 (1092)
Q Consensus 305 ~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~---------~hs~aLT~d 375 (1092)
..|..|+......+.-..||.|+.|-...... .........+. .....|..++... .+.+....+
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 36888887777777778899999997644210 00011112222 1234566665443 344445678
Q ss_pred CcEEEeCCccCCCCccCCCCCcceecceeecCCCC---CCcEEEEEeC------CCe-EEEEEcCCcEEEeecCC
Q 001361 376 GDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLE---GIHVSSVSCG------PWH-TAVVTSAGQLFTFGDGT 440 (1092)
Q Consensus 376 G~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~---~~~I~~IscG------~~H-t~aLt~dG~Vy~wG~N~ 440 (1092)
|.|+.|-... +. .........+..... ...|..++.. ..+ .+....+|.|+.|-...
T Consensus 91 g~i~iw~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 91 GDLLFYRITR---ED-----ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp SCEEEEEEEE---CT-----TTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CCEEEEEccC---Cc-----ccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 9999996441 11 000000112221100 2356666554 344 55567889999996543
No 274
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.11 E-value=68 Score=24.48 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001361 879 LTRKSQLQEIELERTTRQL 897 (1092)
Q Consensus 879 L~~~~~~~~~ei~~~~~~~ 897 (1092)
|-|+.+..++||++.++|+
T Consensus 7 l~qkI~kVdrEI~Kte~kI 25 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQI 25 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 275
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.75 E-value=73 Score=27.78 Aligned_cols=39 Identities=8% Similarity=0.036 Sum_probs=29.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 860 DDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 860 ~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
+-|+++++=|..|+.++..|.++.+.+..+++.+++++.
T Consensus 40 ~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 40 QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666777777888888887777777777777777764
No 276
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=33.27 E-value=1.7e+02 Score=27.10 Aligned_cols=64 Identities=14% Similarity=0.236 Sum_probs=34.5
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------hhhHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQV-------EELTRKSQLQEIELERTTRQLKEALAVAGEETAK----------CRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 866 ~qev~~l~~qv-------~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k----------~~~ake~ik~l~~qlk~~ 928 (1092)
+++|.+|+.++ +.++++++.+-.+|.+..++++..+.-...+.++ .+.-+-...+|..+|+++
T Consensus 28 v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~ 107 (127)
T 1ez3_A 28 VEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEV 107 (127)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 45555555532 3456666666666666666666544443333221 134455666666666665
Q ss_pred H
Q 001361 929 A 929 (1092)
Q Consensus 929 ~ 929 (1092)
.
T Consensus 108 m 108 (127)
T 1ez3_A 108 M 108 (127)
T ss_dssp H
T ss_pred H
Confidence 4
No 277
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=33.16 E-value=56 Score=27.31 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001361 881 RKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLK 926 (1092)
Q Consensus 881 ~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk 926 (1092)
+..+.++.+++++.++++. |+|++ -++-|++|..++-
T Consensus 24 ~~i~~Le~~M~~AA~~leF------E~AA~---lRD~I~~L~~~l~ 60 (63)
T 1e52_A 24 QKIHELEGLMMQHAQNLEF------EEAAQ---IRDQLHQLRELFI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHTTCH------HHHTT---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCH------HHHHH---HHHHHHHHHHHHh
Confidence 3344455566666666666 78887 6778888877654
No 278
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=33.11 E-value=1.3e+02 Score=22.93 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTRQLKEAL 901 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~ 901 (1092)
--.|++||-.|++++.+|-.+--.++++++.-+
T Consensus 6 cmslasqvvkltkql~eqt~~rv~lq~qlq~ll 38 (48)
T 2kes_A 6 CMSLASQVVKLTKQLKEQTVERVTLQNQLQQFL 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999988888888887644
No 279
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=32.18 E-value=1.4e+02 Score=26.04 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 001361 912 RAAKDVIKSLTAQLKDMAE 930 (1092)
Q Consensus 912 ~~ake~ik~l~~qlk~~~e 930 (1092)
...|-++..|.-.|-||.|
T Consensus 48 ~Elk~l~e~Ld~KI~eL~e 66 (79)
T 3cvf_A 48 AEVGRAAQLLDVSLFELSE 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3455566666666555543
No 280
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=32.15 E-value=3.1e+02 Score=25.44 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKD 927 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~ 927 (1092)
|+.+|+.+-+.|..++..+++.-.-+.++...+.+-..+=-+|...|-|-.--|..+|+|
T Consensus 43 El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 43 DLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444445556677777777777776664
No 281
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=32.10 E-value=4.9e+02 Score=27.70 Aligned_cols=189 Identities=11% Similarity=0.036 Sum_probs=87.0
Q ss_pred CeEEEEEeCCcEEEeCCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeC--CCeEEEEEcCCcEEEeecCCCccc
Q 001361 367 HHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCG--PWHTAVVTSAGQLFTFGDGTFGVL 444 (1092)
Q Consensus 367 ~hs~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG--~~Ht~aLt~dG~Vy~wG~N~~GQL 444 (1092)
...++.+.+|.|+.|-... . .. ...+.. ....|..++.. ....+....+|.|+.|-.....
T Consensus 218 ~~~~~~~~~g~i~~~d~~~--~------~~-----~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-- 280 (425)
T 1r5m_A 218 DKFVIPGPKGAIFVYQITE--K------TP-----TGKLIG--HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-- 280 (425)
T ss_dssp TEEEEECGGGCEEEEETTC--S------SC-----SEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS--
T ss_pred CEEEEEcCCCeEEEEEcCC--C------ce-----eeeecc--CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc--
Confidence 3455566788888886441 0 00 011111 12245555543 3355566678889988533211
Q ss_pred CCCCCcccccceeeecCCCCeEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecc
Q 001361 445 GHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAA 524 (1092)
Q Consensus 445 G~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~ 524 (1092)
....+.. ....|..++......++.. ..+|.|+.|-.... .+.....
T Consensus 281 ---------~~~~~~~-~~~~i~~~~~~~~~~l~~~-----------~~d~~i~i~d~~~~------------~~~~~~~ 327 (425)
T 1r5m_A 281 ---------SQNCFYG-HSQSIVSASWVGDDKVISC-----------SMDGSVRLWSLKQN------------TLLALSI 327 (425)
T ss_dssp ---------CSEEECC-CSSCEEEEEEETTTEEEEE-----------ETTSEEEEEETTTT------------EEEEEEE
T ss_pred ---------cceEecC-CCccEEEEEECCCCEEEEE-----------eCCCcEEEEECCCC------------cEeEecc
Confidence 0111111 1223555544333222222 15889999864321 1111111
Q ss_pred cCCCCeEEEEee--CcEEEEEecCCcEEEEeCCCCCCCCCC---CCCC---cc-ceeeccccCC---C-CEEEEEEcCC-
Q 001361 525 LVEPNFCQVSCG--HSLTVALTTTGHVYTMGSPVYGQLGDP---KANG---KL-PTRVEGKLTK---N-FVEEIACGDY- 590 (1092)
Q Consensus 525 l~~~~I~~Ia~G--~~htlaLt~dG~Vy~wG~N~~GQLG~~---~~~~---~~-P~~v~~~l~~---~-~I~~Ia~G~~- 590 (1092)
.....|..++.. ..+.++-..+|.|+.|-.......... .... .. +..+. .+.. . .|..++....
T Consensus 328 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~ 406 (425)
T 1r5m_A 328 VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYA-SYQSSQDNDYIFDLSWNCAG 406 (425)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEE-EECCTTCCCCEEEEEECTTS
T ss_pred cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhh-hhcCcccCCceEEEEccCCC
Confidence 123456665544 335555667888998865322110000 0000 00 00111 1111 2 6777776543
Q ss_pred -EEEEEEcCCeEEEEeC
Q 001361 591 -HVAVLTSRTEVYTWGK 606 (1092)
Q Consensus 591 -HslaLT~dG~Vy~WG~ 606 (1092)
..++-..+|.|+.|-.
T Consensus 407 ~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 407 NKISVAYSLQEGSVVAI 423 (425)
T ss_dssp SEEEEEESSSCCEEEEC
T ss_pred ceEEEEecCceEEEEee
Confidence 4455568888888853
No 282
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=32.02 E-value=22 Score=31.51 Aligned_cols=30 Identities=20% Similarity=0.498 Sum_probs=23.2
Q ss_pred cccccCCCCCcCCcccccccccccccceEEec
Q 001361 656 VDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHT 687 (1092)
Q Consensus 656 ~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~ 687 (1092)
.....|..|+...+++ ..-.|+ ||..||..
T Consensus 23 ~~~~rC~~C~kkvgl~-~~f~Cr-Cg~~FC~~ 52 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLA-TSFECR-CGNNFCAS 52 (85)
T ss_dssp CCCCBCSSSCCBCSSS-SCEECT-TCCEECTT
T ss_pred ccCccchhhCCeeccc-CCeEcC-CCCEeccc
Confidence 3457899999888875 346797 99999964
No 283
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=32.01 E-value=47 Score=32.72 Aligned_cols=57 Identities=18% Similarity=0.319 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 878 ELTRKSQLQEIELERTTRQLKEALAVAGE-ETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 878 ~L~~~~~~~~~ei~~~~~~~~ea~~~a~e-e~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
.|++.++....+..+..+.+++|.+...- |-+-..|||+-...|..+++++.++|--
T Consensus 14 ~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~ 71 (156)
T 2f23_A 14 RLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSR 71 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444555555666665554321 4555778999888888888888777643
No 284
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=31.71 E-value=4.6e+02 Score=27.27 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=12.1
Q ss_pred EEEEEEcCCe-EEEEeCC
Q 001361 591 HVAVLTSRTE-VYTWGKG 607 (1092)
Q Consensus 591 HslaLT~dG~-Vy~WG~n 607 (1092)
+.++++.+|+ +|+-+.+
T Consensus 317 ~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 317 NSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEECTTSCEEEEEEEC
T ss_pred CeEEEcCCCCEEEEEEcc
Confidence 5677888887 7776654
No 285
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=31.33 E-value=1.7e+02 Score=29.20 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhhhhHHHHHHHHHHHHHHHHhh
Q 001361 870 IKLRAQVEELTRKSQLQEIELERTTRQLKEA--------LAVAGEETAKCRAAKDVIKSLTAQLKDMAEM 931 (1092)
Q Consensus 870 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea--------~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~ 931 (1092)
.+|+.++..|.++...++.+-.+++.+++.| ..+.+.|+-+.|-..+-+-.+.+||..+.-+
T Consensus 17 ~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~ 86 (179)
T 2gd5_A 17 LKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMG 86 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555544 3444555555444443333444555555443
No 286
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=31.19 E-value=1.1e+02 Score=25.71 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=27.0
Q ss_pred HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQV------------EELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv------------~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
..|+.+|+.|. ..|.++.+.+..||+++.+++..
T Consensus 12 ~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 12 VKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77788888755 47888999999999888887753
No 287
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=30.95 E-value=10 Score=33.88 Aligned_cols=53 Identities=25% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSL 921 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l 921 (1092)
..|++-||.||..|+-+++.+-.|.++++.--+---++. | +|...+|-+|.-|
T Consensus 42 ~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke~qKtqkal~--E-SKL~~~kk~ie~l 94 (95)
T 3n7n_E 42 VDETLFLQRQIAQLNKQLQLSFQENEKLLSVQKNQKALY--Q-SKLSSKDAFIDDL 94 (95)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHhc
Confidence 789999999999999999998887776653222111111 1 3455555565543
No 288
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=30.94 E-value=10 Score=44.47 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=0.0
Q ss_pred CCCeEEEEEcCceeEEEeCCHHHHHHHHHHHHHHHHcc
Q 001361 88 EYQSFSLIYNDRSLDLICKDKDEAEVWFTGLKALISRS 125 (1092)
Q Consensus 88 ~~~~FSiiy~~rsLDLia~~~~e~~~Wv~gL~~Li~~~ 125 (1092)
...||.|...++++-|.|.+++|.+.|+..|+..+...
T Consensus 327 ~~~~F~i~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 364 (510)
T 3jzy_A 327 DEPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQY 364 (510)
T ss_dssp --------------------------------------
T ss_pred cccceeeeccceeEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 45799999988999999999999999999999888764
No 289
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=30.93 E-value=69 Score=23.25 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
-|.+|...|+.|-.+-..++.|+.++++-+-
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4778888899999999999999988877654
No 290
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=30.93 E-value=4.6e+02 Score=29.43 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=43.8
Q ss_pred EEEEEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeCCCeEEEEEeCCcEEEeCCc
Q 001361 307 VQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 307 I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~dG~Vy~wG~n 384 (1092)
|.+|++ ....+++..+|.|+.|=-....+ ...+..+. ..|.+|.+-....++++.+|.|+.|--.
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~-----------~~~~~~~~-~~v~~i~~~~p~~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSE-----------FRTVTSFE-KPVFQLKNVNNTLVILNSVNDLSALDLR 154 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTC-----------EEEEEECS-SCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhc-----------cCccceee-cceeeEEecCCCEEEEECCCCEEEEEcc
Confidence 899999 66777777999999996443221 11112222 3456666666668888999999999543
No 291
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=30.73 E-value=86 Score=21.89 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELE 891 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~ 891 (1092)
+|+-+|++-|..|.++.+.+|.-+|
T Consensus 6 e~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666666665554
No 292
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=30.63 E-value=4.7e+02 Score=27.04 Aligned_cols=117 Identities=12% Similarity=0.003 Sum_probs=64.2
Q ss_pred CEEEEEec--Cc-eEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeec-cCCCcEEEEEeC-CCeEEEEEeCCcEEE
Q 001361 306 DVQNIACG--GR-HAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDA-LKNINVELVACG-EHHTCAVTLSGDMYT 380 (1092)
Q Consensus 306 ~I~~Ia~G--~~-hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~-l~~~~I~~Ia~G-~~hs~aLT~dG~Vy~ 380 (1092)
.|..++.. .. ..+.-..+|.|+.|-....+++ ..+.. .....|..++.. ....+....+|.|+.
T Consensus 58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~i 126 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-----------QALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126 (342)
T ss_dssp CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-----------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-----------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEE
Confidence 56555543 44 5666778999999964121221 22221 022356666554 456666678899999
Q ss_pred eCCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeecCC
Q 001361 381 WGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGT 440 (1092)
Q Consensus 381 wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~N~ 440 (1092)
|-... .. .........+... ......|..++......++.+.+|.|+.|-...
T Consensus 127 wd~~~--~~---~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 127 IDPRN--YG---DGVIAVKNLNSNN--TKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp ECHHH--HT---TBCEEEEESCSSS--SSSCCCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred Ecccc--cc---cccccccCCeeeE--EeeCCceEEEEecCCcEEEEeCCCeEEEEECCc
Confidence 95331 00 0000000011111 112346888888888877778899999997543
No 293
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=30.60 E-value=2.9e+02 Score=27.16 Aligned_cols=52 Identities=33% Similarity=0.314 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHH
Q 001361 876 VEELTRKSQLQEIELERTTRQLKEALAVAGEETA-KCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 876 v~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~-k~~~ake~ik~l~~qlk~~ 928 (1092)
++....+|..++.+|.-....++. +.++.+.++ |-..-.+=||.|+.+||+.
T Consensus 37 ae~aE~k~~eLEeeL~~v~~nlKs-LE~seekasqrEd~yEeqIk~L~~kLKEA 89 (155)
T 2efr_A 37 AELSEGKSAELEEELKTVTNNLKS-LEAQAEKYSQKEDKYEEEIKVLSDKLKEA 89 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-chhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555544 223333322 2333456677777777764
No 294
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=30.31 E-value=84 Score=27.85 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 873 RAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 873 ~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
+.+++.|..+.+.++.+|..+..++-
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666666555554
No 295
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=30.15 E-value=99 Score=29.94 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKC 911 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~ 911 (1092)
-+|-..|+++|.+..++..+++.+|..+.+--+|...+ .+|-.|.
T Consensus 58 y~EYk~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i-~~EY~r~ 102 (140)
T 1xaw_A 58 LQEYKSLQSVLDEINKELSRLDKELDDYREESEEYMAA-ADEYNRL 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH-HHHHHHH
Confidence 78999999999999999999999999876555554433 4566654
No 296
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=30.05 E-value=30 Score=26.98 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=25.0
Q ss_pred ccccCCCCCcCCcccccccccccccceEEeccCCC
Q 001361 657 DQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSK 691 (1092)
Q Consensus 657 d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~ 691 (1092)
+...|..|...|.-.........||.+||..|-..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~ 38 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEE 38 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHH
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHH
Confidence 45679999888754434445567999999998644
No 297
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=29.91 E-value=73 Score=28.38 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=3.1
Q ss_pred HHHHHhhCCCc
Q 001361 925 LKDMAEMLPVG 935 (1092)
Q Consensus 925 lk~~~e~lp~~ 935 (1092)
|+.|--.+|.+
T Consensus 69 Lr~ll~~~p~~ 79 (87)
T 1hjb_A 69 LRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHCcHH
Confidence 44444445554
No 298
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=29.87 E-value=1.2e+02 Score=27.39 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=31.6
Q ss_pred hhhhhhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Q 001361 860 DDAKRTSEEVIKLRAQV------------EELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 860 ~~l~~~~qev~~l~~qv------------~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
.+.++...|+.+|+.|. ..|.|+.+.+..||+++++++..
T Consensus 23 ~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444478888888865 48999999999999999988876
No 299
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=29.86 E-value=3.1e+02 Score=28.39 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=50.9
Q ss_pred CCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 851 GLASPKIVVDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 851 ~~~~~~~~~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
++.......|++.+.-+|+..+--++.+|+..+..++.||.++++++-- . |=--.=..++-||.+...|.|+
T Consensus 128 gl~~t~~~ld~a~~~~~~~l~~lvelA~le~~~~~L~~eIkkT~RRVNA-L-----E~viIP~~e~tikyI~~~LdE~ 199 (217)
T 3aon_A 128 GYLHSNAELDRSIDGFTQLLPKLLKLAEVEKTCQLMAEEIEKTRRRVNA-L-----EYMTIPQLEETIYYIKMKLEEN 199 (217)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----HHTHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-h-----hhhhccchHHHHHHHHHHHhHH
Confidence 3334445678888889999999999999999999999999999998752 1 1111122445566666666654
No 300
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=29.69 E-value=25 Score=28.84 Aligned_cols=54 Identities=28% Similarity=0.561 Sum_probs=36.9
Q ss_pred cccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhh
Q 001361 656 VDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGK 715 (1092)
Q Consensus 656 ~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~ 715 (1092)
.|...|..|...---..--|.|..|-.-||+-|.....+ ..++..-||.-|..+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~l------r~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSL------RSNKVMWVCNLCRKQ 60 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEES------STTCEEEEEHHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeee------cCCeEEEEehhhhhc
Confidence 466789999753222223467999999999999765433 125667799988654
No 301
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=29.65 E-value=5.8e+02 Score=27.82 Aligned_cols=221 Identities=12% Similarity=-0.019 Sum_probs=110.9
Q ss_pred EEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcc--eEeeccCCCcEEEEEeCC-----CeEEEEEeCCcEEEeC
Q 001361 310 IACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHP--KLIDALKNINVELVACGE-----HHTCAVTLSGDMYTWG 382 (1092)
Q Consensus 310 Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P--~~V~~l~~~~I~~Ia~G~-----~hs~aLT~dG~Vy~wG 382 (1092)
.+....+.+++|+.|++|..-...--..+. ...-.| ..+..-.+.+|+.+.+.. ...+++|.+|.+.-.-
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r---~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~ 125 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASR---TARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSK 125 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCS---SSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEE
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCc---cCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeE
Confidence 455667788899999999886432111111 011111 123333567888886653 4688899999887664
Q ss_pred CccCCCCccCCCCCcceecceeecCCCCCCcEEEE--EeCCCeEEEEEcCCcEEEeecC--CCcccCCCCCcccccceee
Q 001361 383 GSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSV--SCGPWHTAVVTSAGQLFTFGDG--TFGVLGHGDRISVSTPREV 458 (1092)
Q Consensus 383 ~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~I--scG~~Ht~aLt~dG~Vy~wG~N--~~GQLG~g~~~~~~~P~~V 458 (1092)
... +-.... .-.......++..++.+ ..+..+.+++|++|++|.+--. .--.+|....-. +.+
T Consensus 126 l~~--~~~~~r-------~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv----~~i 192 (327)
T 3uc1_A 126 LTD--FDSNRS-------GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV----QGM 192 (327)
T ss_dssp GGG--GCCCCS-------SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----ESS
T ss_pred HHH--hhcccc-------CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----eee
Confidence 331 110000 00111111223445443 4466789999999999999866 443343322111 112
Q ss_pred ecCCCCeEEEEecCC--ceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccC-CCCeEEE--
Q 001361 459 DSLKGLRTVRAACGV--WHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALV-EPNFCQV-- 533 (1092)
Q Consensus 459 ~~l~~~~I~~VacG~--~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~-~~~I~~I-- 533 (1092)
..-.+.+|+.+..-. .+-++++ .+|.+.-.-..++-..+.+...... +.... +..++.+
T Consensus 193 ~L~~~d~Vv~~~~~~~~~~ll~~T------------~~G~~Krt~l~e~~~~~R~~~G~~~----~~l~~~~d~lv~~~~ 256 (327)
T 3uc1_A 193 RFNIDDRLLSLNVVREGTYLLVAT------------SGGYAKRTAIEEYPVQGRGGKGVLT----VMYDRRRGRLVGALI 256 (327)
T ss_dssp CCCTTCCEEEEEECCTTCEEEEEE------------TTSEEEEEEGGGSCBCCTTSCCEES----SCCCTTTCSEEEEEE
T ss_pred cCCCCCEEEEEEEECCCCEEEEEe------------CCCcEEEEEHHHccccCcCCCcEEE----EEecCCCCeEEEEEE
Confidence 222445666655432 2334444 4665554432222211111110000 00000 1223333
Q ss_pred EeeCcEEEEEecCCcEEEEeCCCCCCCCC
Q 001361 534 SCGHSLTVALTTTGHVYTMGSPVYGQLGD 562 (1092)
Q Consensus 534 a~G~~htlaLt~dG~Vy~wG~N~~GQLG~ 562 (1092)
..+....+++|.+|.+.-+-..+.-..|.
T Consensus 257 ~~~~~~i~l~T~~G~~ir~~~~~i~~~gR 285 (327)
T 3uc1_A 257 VDDDSELYAVTSGGGVIRTAARQVRKAGR 285 (327)
T ss_dssp ECTTCEEEEEEGGGCEEEEEGGGSCBCCT
T ss_pred eCCCccEEEEcCCCeEEEEehhhccccCC
Confidence 23567889999999998886555444443
No 302
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=29.64 E-value=92 Score=29.53 Aligned_cols=17 Identities=47% Similarity=0.524 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRK 882 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~ 882 (1092)
.+||.+|++||++++.+
T Consensus 3 ~~e~~~l~~qi~~~ekr 19 (123)
T 4dzo_A 3 SKEVAELKKQVESAELK 19 (123)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35677777666665554
No 303
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=29.59 E-value=84 Score=29.41 Aligned_cols=18 Identities=17% Similarity=0.490 Sum_probs=8.1
Q ss_pred HhhhhhhhHHHHHHHHHH
Q 001361 906 EETAKCRAAKDVIKSLTA 923 (1092)
Q Consensus 906 ee~~k~~~ake~ik~l~~ 923 (1092)
++.-||.-+||+.+.|..
T Consensus 55 dkId~CeCnkei~e~L~~ 72 (129)
T 3f6n_A 55 KLINDCPCNKEILEALGT 72 (129)
T ss_dssp HHHHTCTTHHHHHHHHTC
T ss_pred HHHhcCcchHHHHHHHcc
Confidence 344444444444444433
No 304
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=29.43 E-value=54 Score=23.81 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
|.|.+|...|+.|=++-..++.|+.+++.-+.+
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELARIKKLLGE 33 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CchhHHHHHHHHHHHccHHHHHHHHHHHHHhcc
Confidence 457788888999888888888899888775543
No 305
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=29.43 E-value=1.8e+02 Score=33.67 Aligned_cols=67 Identities=21% Similarity=0.203 Sum_probs=43.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 001361 860 DDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKD 927 (1092)
Q Consensus 860 ~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~ 927 (1092)
++++++.+|=.|. .|-=.+++-.+..++|++++++.+.+|-...++-.+|...+.-||.++...|.+
T Consensus 294 ~elkqrqeee~r~-~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~ 360 (551)
T 2b5u_A 294 DQVKQRQDEENRR-QQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDA 360 (551)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 4455533333333 333344555577777788888888888777777777766677888887776644
No 306
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=29.40 E-value=3e+02 Score=24.32 Aligned_cols=14 Identities=7% Similarity=0.306 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhCC
Q 001361 920 SLTAQLKDMAEMLP 933 (1092)
Q Consensus 920 ~l~~qlk~~~e~lp 933 (1092)
-|-.+|++|.++|-
T Consensus 74 eLE~~l~el~~rl~ 87 (89)
T 3bas_A 74 HLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 45557888887763
No 307
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=29.27 E-value=23 Score=30.57 Aligned_cols=27 Identities=26% Similarity=0.785 Sum_probs=21.7
Q ss_pred cccCCCCCcCCcccccccccccccceEEec
Q 001361 658 QSMCSGCRIPFNFKRKRHNCYNCGLVYCHT 687 (1092)
Q Consensus 658 ~s~C~~C~~~F~~~~krhhC~~CG~v~C~~ 687 (1092)
...|..|+...+++. -.|+ ||..||..
T Consensus 25 ~nRC~~CrKkvgL~g--f~Cr-Cg~~FCs~ 51 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTG--FDCR-CGNLFCGL 51 (74)
T ss_dssp TTBCSSSCCBCGGGC--EECT-TSCEECSS
T ss_pred CCcChhhCCcccccC--eecC-CCCEechh
Confidence 357999999888763 5799 99999964
No 308
>2p61_A Hypothetical protein TM_1646; structural genomics, unknown function, PSI-2, protein structure initiative; 2.70A {Thermotoga maritima MSB8} SCOP: a.24.29.1
Probab=29.12 E-value=1.2e+02 Score=30.21 Aligned_cols=85 Identities=15% Similarity=0.113 Sum_probs=57.2
Q ss_pred CCCCcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhh----------hhHHHHH
Q 001361 852 LASPKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQE--IELERTTRQLKEALAVAGEETAKC----------RAAKDVI 918 (1092)
Q Consensus 852 ~~~~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~--~ei~~~~~~~~ea~~~a~ee~~k~----------~~ake~i 918 (1092)
.+|+....+.-.+. .+|+.+|-.++...-+++..-- .+|.++++-|++=+..|...+=+. .--=.+|
T Consensus 35 ~~F~~~l~~~~~~~~~e~L~~Ll~~I~~~G~rL~~~~t~~~l~~YK~lVK~FL~~vv~~~~~l~~~~~~~~G~~r~y~iV 114 (162)
T 2p61_A 35 KEFFDILEDVKEDHFEKLLEEAVEEVIDSGNELVRSPTPSNLKRYKNAIKEFLKLIEKKIYKLAGSFDMNSGRARLHLVV 114 (162)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCceeEEee
Confidence 44555544422211 5667777777666666554432 789999999999888887766555 2233789
Q ss_pred HHHHHHHHHHHhhCCCcc
Q 001361 919 KSLTAQLKDMAEMLPVGA 936 (1092)
Q Consensus 919 k~l~~qlk~~~e~lp~~~ 936 (1092)
|-+..+|.+|++.|-.+.
T Consensus 115 k~ID~kL~eLt~~ll~~e 132 (162)
T 2p61_A 115 EEVNEKLMDLTEKIMKNE 132 (162)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred hHHhHHHHHHHHHHHHhc
Confidence 999999999999876654
No 309
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=29.01 E-value=1.1e+02 Score=27.41 Aligned_cols=21 Identities=14% Similarity=0.136 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001361 875 QVEELTRKSQLQEIELERTTR 895 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~ 895 (1092)
|...|+.+-..+..|++.+++
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~ 69 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQ 69 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 310
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=28.81 E-value=4e+02 Score=26.06 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 001361 870 IKLRAQVEELTRKSQLQ---EIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 934 (1092)
Q Consensus 870 ~~l~~qv~~L~~~~~~~---~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~ 934 (1092)
..|..-+..|+.+.+.+ ...|+.+....++...-|.+.+.-+|.=-+=|+++..+|+...+.||-
T Consensus 82 ~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sLPD 149 (152)
T 4fla_A 82 LLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPD 149 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 33444444555444433 345555556666666666666655665566678888899999999984
No 311
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=28.68 E-value=2.5e+02 Score=25.85 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=25.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 859 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 859 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
..+|....+|+..|..|+..|+.+++.++.|=.-+=.||..
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556677777777777777777777665555555543
No 312
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.66 E-value=1.8e+02 Score=33.82 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 882 KSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 882 ~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
...+...+|++.++.++|.+....+ +..+..+.+|+.|+.+|..|..++
T Consensus 143 ~~~~~~~~~e~~~~~i~~~~~~~~~--~~i~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 143 ILSEYNTEMELHYNYIKDNLDNNIP--SSLRVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccch--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555544322211 112223444555555555444433
No 313
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=28.47 E-value=31 Score=28.97 Aligned_cols=28 Identities=21% Similarity=0.730 Sum_probs=22.3
Q ss_pred ccccCCCCCcCCcccccccccccccceEEec
Q 001361 657 DQSMCSGCRIPFNFKRKRHNCYNCGLVYCHT 687 (1092)
Q Consensus 657 d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~ 687 (1092)
....|..|+...+++ .-.| .||..||..
T Consensus 14 ~~~rC~~C~kkvgl~--~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM--GFKC-KCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTS--CEEC-TTSCEECSS
T ss_pred cCCcChhhCCccccc--CeEe-ecCCEeccc
Confidence 446799999987776 4679 599999975
No 314
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=28.39 E-value=19 Score=39.71 Aligned_cols=75 Identities=21% Similarity=0.379 Sum_probs=39.9
Q ss_pred EecCCcceeeeee-ccccccccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCC-----C-CCCCeeeCc
Q 001361 638 VCGTSFTAAICLH-KWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAP-----N-PNKPYRVCD 710 (1092)
Q Consensus 638 acG~~~T~al~~~-kwvs~~d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~-----~-~~k~~RVC~ 710 (1092)
.||+..++.+... .-..|.-.-.|+.|+..+.+ .|..|.+||.- .+..+..+.. . ..-.+-+|+
T Consensus 187 vCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~--~R~~C~~Cg~~-------~~l~y~~~e~~~~~~~~~~~r~e~C~ 257 (309)
T 2fiy_A 187 ACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY--VRIKCSHCEES-------KHLAYLSLEHDGQPAEKAVLRAETCP 257 (309)
T ss_dssp TTCCCEEEEEEEC----CCEEEEEETTTCCEEEC--CTTSCSSSCCC-------SCCEEECCCC-CCCSTTCSEEEEEET
T ss_pred CCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee--cCcCCcCCCCC-------CCeeEEEecCccccCCCcceEEEEcc
Confidence 4677666665431 11233344668888765544 45667777753 2223322221 1 112344899
Q ss_pred cchhhhhcccC
Q 001361 711 NCFGKLTKATE 721 (1092)
Q Consensus 711 ~C~~~l~~~~~ 721 (1092)
.|..-++....
T Consensus 258 ~C~~YlK~~~~ 268 (309)
T 2fiy_A 258 SCQGYLKQFYL 268 (309)
T ss_dssp TTTEEEEEEET
T ss_pred cccchHhhhhh
Confidence 99888776544
No 315
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.37 E-value=28 Score=30.20 Aligned_cols=51 Identities=18% Similarity=0.541 Sum_probs=37.0
Q ss_pred cccccCCCCCcCCccccccc-ccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhh
Q 001361 656 VDQSMCSGCRIPFNFKRKRH-NCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKL 716 (1092)
Q Consensus 656 ~d~s~C~~C~~~F~~~~krh-hC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l 716 (1092)
.....|..|+.+|++...+. .|..|-.-+|..|.... . .+.=.|..|+.+.
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~-------~---~~~W~C~VC~k~~ 74 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE-------S---NGTWRCKVCSGPS 74 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC-------S---TTCEEEHHHHSSC
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccccccC-------C---CCCEEEeeCchhh
Confidence 34567999999999766554 49999999999985332 1 1356788888753
No 316
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=28.30 E-value=4e+02 Score=26.31 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=46.9
Q ss_pred CCCCCCcchhhhhhhh-----------HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001361 850 SGLASPKIVVDDAKRT-----------SEEVIKLRA-------QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKC 911 (1092)
Q Consensus 850 ~~~~~~~~~~~~l~~~-----------~qev~~l~~-------qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~ 911 (1092)
.+|..||.+..+-+-+ ..-+.+|.+ |++-=.++..+..-.+|.+-...++|+.+-..---|.
T Consensus 40 p~LkaPe~Lna~grLTLLLGnL~~IlG~~SlTqL~nrL~~wlsQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny 119 (201)
T 3u0c_A 40 PELKAPKSLNASSQLTLLIGNLIQILGEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKL 119 (201)
T ss_dssp ---------CHHHHHHHHHHHHHHHHCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCchhcCcchhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455666666665555 122233433 3333333333333344777788888888888888899
Q ss_pred hhHHHHHHHHHHHHHHHHhhC
Q 001361 912 RAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 912 ~~ake~ik~l~~qlk~~~e~l 932 (1092)
++|+-.+++|...+..+-.||
T Consensus 120 ~~Ads~~~~lekKvn~aq~kL 140 (201)
T 3u0c_A 120 KNADSKIKDLENKINQIQTRL 140 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988777654444
No 317
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.29 E-value=1.6e+02 Score=24.31 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
.+++..|..+...|+.+++.++.|++.++.-+.|
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677777778888888888888888777766654
No 318
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=28.16 E-value=91 Score=22.46 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
|.+|...|+.|-++-..++.|+.+++.-+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 677888888888888888888888776554
No 319
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=27.93 E-value=1e+02 Score=30.43 Aligned_cols=26 Identities=12% Similarity=0.319 Sum_probs=20.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 907 ETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 907 e~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
|-+--.||||-...+..+++++.++|
T Consensus 44 ENaeY~aak~~q~~~e~rI~~L~~~L 69 (158)
T 2p4v_A 44 ENADYQYNKKRLREIDRRVRYLTKCM 69 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778999888888888888776
No 320
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=27.84 E-value=1.2e+02 Score=25.79 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001361 875 QVEELTRKSQLQEIELERTT 894 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~ 894 (1092)
+|..|++++.+++.||.+.+
T Consensus 47 EV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 47 EVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999998754
No 321
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.75 E-value=1.2e+02 Score=33.61 Aligned_cols=9 Identities=44% Similarity=0.305 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 001361 866 SEEVIKLRA 874 (1092)
Q Consensus 866 ~qev~~l~~ 874 (1092)
.+|+.+|..
T Consensus 11 ~~~~~~~e~ 19 (323)
T 1lwu_C 11 LEEVRILEQ 19 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 322
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=27.55 E-value=69 Score=31.62 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=15.0
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 856 KIVVDDAKRTSEEVIKLRAQVEELTRKSQLQEI 888 (1092)
Q Consensus 856 ~~~~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ 888 (1092)
+..++.||+..+.|..|+.+|+.|+.+++.+..
T Consensus 5 ~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~ 37 (182)
T 3kqg_A 5 NAQIPELKSDLEKASALNTKIRALQGSLENMSK 37 (182)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666566666666666666666554444
No 323
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=27.46 E-value=1.3e+02 Score=21.25 Aligned_cols=29 Identities=14% Similarity=0.231 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTRQL 897 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~ 897 (1092)
|..|++.|+.|++|--++.-++-.++.|+
T Consensus 3 vsalkekvsalkeqflmlmfkvsalkekv 31 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLMLMFKVSALKEKV 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888877777776666554
No 324
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=27.37 E-value=90 Score=28.66 Aligned_cols=49 Identities=24% Similarity=0.292 Sum_probs=36.0
Q ss_pred CCCcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 853 ASPKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL 901 (1092)
Q Consensus 853 ~~~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~ 901 (1092)
.|-+...+++.+. ...+..+...++.|..+.+.++.+++.++.++.+..
T Consensus 62 vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 62 LIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666 666677777888888888888888888888887754
No 325
>1g73_A SMAC/diablo, second mitochondria-derived activator of caspases; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: a.7.4.1
Probab=27.16 E-value=2.5e+02 Score=27.57 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIEL---ERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei---~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
-|.++.-|.|++.++++|..++.-. .++-+-.-||.-+++-|.+ +-+|.+-|.+--.|..++
T Consensus 78 WqvIi~~R~E~~d~k~e~~rles~w~~a~~l~e~aAEaAy~sGAd~a-svta~~~iq~AqsqV~~~ 142 (162)
T 1g73_A 78 WQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGADQA-SITARNHIQLVKLQVEEV 142 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHH-HHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999998554 4555556688888888888 577888887777766554
No 326
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.11 E-value=1.2e+02 Score=24.92 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
.+.+..|..+|+.|+.+-..+..+|+.++.++.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777777776666554
No 327
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.10 E-value=93 Score=26.59 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 889 ELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 889 ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
|++....+-.+++.-+.+|... .+--|.+|..+|..|
T Consensus 39 el~~~~~~~~~~l~~~k~Ei~e---lrr~iq~L~~el~sl 75 (77)
T 3trt_A 39 DLSEAANRNNDALRQAKQESTE---YRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHhh
Confidence 3444444444555556666555 777888998888765
No 328
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=26.95 E-value=1.3e+02 Score=20.86 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTT 894 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~ 894 (1092)
|+..|+.++..|+++...+.-||..++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555554444
No 329
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=26.75 E-value=2.9e+02 Score=27.54 Aligned_cols=64 Identities=9% Similarity=0.063 Sum_probs=39.5
Q ss_pred HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQV---------EELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMA 929 (1092)
Q Consensus 866 ~qev~~l~~qv---------~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~ 929 (1092)
++++.+|..+. ..++++.+.+-.++.+..++++..+.-.....+..+..|-+..+|+.+|+++.
T Consensus 25 v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~~r~~k~~~~~L~~~f~~~~ 97 (196)
T 1fio_A 25 INQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLI 97 (196)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHH
Confidence 55555555541 25777777777777777777766665555544444556666677777666553
No 330
>1few_A Second mitochondria-derived activator of caspases; SMAC, diablo, apoptosis, caspase activation, IAP inhibition; 2.20A {Homo sapiens} SCOP: a.7.4.1
Probab=26.70 E-value=2.7e+02 Score=27.91 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIEL---ERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei---~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~ 928 (1092)
-|.++.-|.|++.++++|..++.-. .++-+-.-||.-+++-|.+ +-+|.+-|..--.|.+++
T Consensus 78 WqvIi~~R~E~~~kk~e~~rlEs~w~~a~~L~e~aAEaAy~sGAd~a-svta~~~iq~aqsqV~~~ 142 (184)
T 1few_A 78 WQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGADQA-SITARNHIQLVKLQVEEV 142 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHH-HHHHHHHHHHHHHHHHHH
Confidence 6778888999999999998888544 4444555577777777777 567777777666666554
No 331
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=26.68 E-value=98 Score=23.22 Aligned_cols=9 Identities=33% Similarity=0.553 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 001361 871 KLRAQVEEL 879 (1092)
Q Consensus 871 ~l~~qv~~L 879 (1092)
+|..+|.+|
T Consensus 7 qlenevasl 15 (49)
T 3he5_A 7 QLENEVASL 15 (49)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 333344333
No 332
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.52 E-value=1.3e+02 Score=26.32 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTR 895 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~ 895 (1092)
++.|.-||-+|+.|+++-..+..|.+.++.
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666667777888888777777776666544
No 333
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.31 E-value=1.1e+02 Score=28.89 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIE 889 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~e 889 (1092)
.+||.+|++++..|+++++.+..-
T Consensus 17 e~e~~~l~~~~~el~~~l~~~~~~ 40 (125)
T 1joc_A 17 EGEIEKLQTKVLELQRKLDNTTAA 40 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666544433
No 334
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=26.21 E-value=1e+02 Score=30.90 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=8.2
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 001361 908 TAKCRAAKDVIKSLTAQLKD 927 (1092)
Q Consensus 908 ~~k~~~ake~ik~l~~qlk~ 927 (1092)
..+.-..+--|.++..+|..
T Consensus 70 ~~~l~~~~a~l~~v~~~lqt 89 (179)
T 2gd5_A 70 VSKLYASKAHMNSVLMGMKN 89 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444433
No 335
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=25.99 E-value=6.5e+02 Score=27.13 Aligned_cols=218 Identities=10% Similarity=0.021 Sum_probs=109.1
Q ss_pred EEecCceEEEEEcCCeEEEEeCCCC---CccCCCCCCCCCcceEeeccCCCcEEEEEeC-----CCeEEEEEeCCcEEEe
Q 001361 310 IACGGRHAALVTKQGEVFSWGEELG---GRLGHGVDSDVSHPKLIDALKNINVELVACG-----EHHTCAVTLSGDMYTW 381 (1092)
Q Consensus 310 Ia~G~~hs~~Lt~dG~Vy~wG~N~~---GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G-----~~hs~aLT~dG~Vy~w 381 (1092)
++.+..+.+++|+.|.+|.+-...- ++-+.|. .....+..-.+..|..+... ..+.+++|++|.++..
T Consensus 54 ~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~----~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~ 129 (312)
T 1suu_A 54 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQ----NISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARF 129 (312)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCC-------C----BGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEE
T ss_pred EECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCc----ChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEE
Confidence 4566778999999999999865432 1111111 11122333346677777654 4568899999999988
Q ss_pred CCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEe--CCCeEEEEEcCCcEEEeecCCCcccCCCCCcccccceeee
Q 001361 382 GGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSC--GPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVD 459 (1092)
Q Consensus 382 G~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~Isc--G~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~ 459 (1092)
--..+.... +.| .......++..++.+.. +..+.+++|++|.++.+-.+..-..|.+..-. +.+.
T Consensus 130 ~l~~~~~~r-~~G--------~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv----~~i~ 196 (312)
T 1suu_A 130 ESTDFKAVK-SRG--------VIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGV----CGMK 196 (312)
T ss_dssp EGGGGCC-----C--------EECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCE----ECCC
T ss_pred EHHHhhccC-CCc--------EEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCe----EeEE
Confidence 654211110 111 11111223445665543 56689999999999988766544444321110 0111
Q ss_pred cCCCCeEEEEec--CCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEE--Ee
Q 001361 460 SLKGLRTVRAAC--GVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQV--SC 535 (1092)
Q Consensus 460 ~l~~~~I~~Vac--G~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~I--a~ 535 (1092)
...+..|+.+.. ...+-++++ .+|.+...--.++-..+.+..-... .. +.......++.+ ..
T Consensus 197 L~~~d~vv~~~~v~~~~~l~~vt------------~~G~~kr~~~~e~~~~~R~~kGv~~-~~-~~k~~~~~lv~~~~~~ 262 (312)
T 1suu_A 197 LKEGDLFVKVLSVKENPYLLIVS------------ENGYGKRLNMSKISELKRGATGYTS-YK-KSDKKAGSVVDAIAVS 262 (312)
T ss_dssp CCTTCCEEEEEECTTCSEEEEEE------------TTSEEEEEEGGGSCBCCTTCCCEEC-SC-TTCTTTCSEEEEEEEC
T ss_pred eCCCCEEEEEEEECCCCeEEEEE------------CCCceEEEEHHHhcccCCCCCCEEe-eE-ccCCCCCeEEEEEEeC
Confidence 112334444432 233444444 4666655554444333332221110 00 000011233322 23
Q ss_pred eCcEEEEEecCCcEEEEeCCCCC
Q 001361 536 GHSLTVALTTTGHVYTMGSPVYG 558 (1092)
Q Consensus 536 G~~htlaLt~dG~Vy~wG~N~~G 558 (1092)
.....+++|..|.+.-.-.++.-
T Consensus 263 ~~~~l~~~t~~g~~~r~~~~~i~ 285 (312)
T 1suu_A 263 EDDEILLVSKRSKALRTVAGKVS 285 (312)
T ss_dssp TTCEEEEEETTCEEEEEEGGGSC
T ss_pred CCCEEEEEeCCCeEEEEEcccCC
Confidence 55667788888877766555443
No 336
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=25.77 E-value=2.4e+02 Score=29.77 Aligned_cols=25 Identities=16% Similarity=0.457 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhCCCc
Q 001361 911 CRAAKDVIKSLTAQLKDMAEMLPVG 935 (1092)
Q Consensus 911 ~~~ake~ik~l~~qlk~~~e~lp~~ 935 (1092)
|+.|++.|+.+..++++|++.||+.
T Consensus 70 ~~~A~~~l~~~~~~~~~L~~~l~~~ 94 (240)
T 1j1j_A 70 CLKAREHFGTVKTHLTSLKTKFPAE 94 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 7778889999999999999999865
No 337
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=25.55 E-value=1e+02 Score=26.84 Aligned_cols=35 Identities=6% Similarity=0.112 Sum_probs=27.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 860 DDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTT 894 (1092)
Q Consensus 860 ~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~ 894 (1092)
.-|+++++=|..|+.|+..|.++.+.+..+||..+
T Consensus 43 ~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 43 AVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44666688888899999999888888888888754
No 338
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=25.40 E-value=2.7e+02 Score=28.84 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL 901 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~ 901 (1092)
.+++.+|++|+..|+.+.-.+.+|++-++|+.+.-.
T Consensus 65 ~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~ 100 (213)
T 4ani_A 65 KAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEM 100 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888888888888887777776533
No 339
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.39 E-value=34 Score=29.54 Aligned_cols=28 Identities=25% Similarity=0.767 Sum_probs=22.1
Q ss_pred ccccCCCCCcCCcccccccccccccceEEec
Q 001361 657 DQSMCSGCRIPFNFKRKRHNCYNCGLVYCHT 687 (1092)
Q Consensus 657 d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~ 687 (1092)
....|..|+...+++ .-.| .||..||..
T Consensus 24 ~~~RC~~C~kkvgL~--~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT--GFKC-RCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTT--CEEC-TTSCEECTT
T ss_pred cCccchhhcCccccc--ceEe-ccCCEeccc
Confidence 346799999888877 5679 499999964
No 340
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=25.32 E-value=2.6e+02 Score=29.09 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=20.2
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 899 EALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 899 ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
++..+-+.|+-+.|-.+.-+-.+.+||..++=+|
T Consensus 54 ~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rl 87 (218)
T 3frt_A 54 DVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGM 87 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666665555555555666777665554
No 341
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=25.31 E-value=85 Score=33.72 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=33.2
Q ss_pred CCCCCCCeEEEEEcC--ceeEEEeCCHHHHHHHHHHHHHHH
Q 001361 84 RPEKEYQSFSLIYND--RSLDLICKDKDEAEVWFTGLKALI 122 (1092)
Q Consensus 84 ~~~~~~~~FSiiy~~--rsLDLia~~~~e~~~Wv~gL~~Li 122 (1092)
..+++.++|-|.-.+ .++=|-|+|.+++..|+..|..=|
T Consensus 221 ~~d~~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~i 261 (263)
T 1z87_A 221 PTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQI 261 (263)
T ss_dssp SSCSSSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccCCCCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHHh
Confidence 345578899999965 789999999999999999988755
No 342
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.26 E-value=1.2e+02 Score=24.89 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQL 897 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~ 897 (1092)
.+.+..|..+|+.|+.+-+.+..+|..++.++
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777777776666554
No 343
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=25.06 E-value=1.3e+02 Score=26.57 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=27.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 860 DDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 860 ~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
.-|+++.+=|..|+.+...|..+.+.+..+.+.+++++++
T Consensus 45 ~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 45 VILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666667777777777777766676676666666654
No 344
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=24.96 E-value=99 Score=31.12 Aligned_cols=30 Identities=13% Similarity=0.146 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTR 895 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~ 895 (1092)
+.+..+|+.+++.|+++.+.++.+++.++.
T Consensus 55 ~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 55 AIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666667777777666666666666
No 345
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=24.96 E-value=4.1e+02 Score=24.52 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLK 926 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk 926 (1092)
|+-.|++++....+.+.....+|.++++ |.++++++.|-|-.|.+|..
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~-----------ei~q~~~~lE~I~vLkaQv~ 72 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKE-----------EAEQHKIVMETVPVLKAQAD 72 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 4444555554444444444444444333 55556666677777777654
No 346
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.74 E-value=4.4e+02 Score=24.74 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=34.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 001361 861 DAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKD 927 (1092)
Q Consensus 861 ~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~ 927 (1092)
+++.+..|+..|+.+|.+|+-+.+.+......+...+.|+-..-..+.+. +...|-.|-++|..
T Consensus 30 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~---~q~~i~~lE~eL~~ 93 (129)
T 3tnu_B 30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKD---ARNKLAELEEALQK 93 (129)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHH
Confidence 34434666777777777776666666666555556665544433333332 55566666665543
No 347
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=24.54 E-value=1.7e+02 Score=32.18 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQ----------LKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~----------~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
..++.++++++...+.+.+..+.++++.++- +++|-.-...--+..++++.-|+.+.++|+....+|
T Consensus 76 ~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l 152 (369)
T 4dk0_A 76 KAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNL 152 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555554432 222211111112234456666667777777666555
No 348
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=24.42 E-value=1.4e+02 Score=24.70 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
.+.+..|..+|+.|+.+-..+..+|+.++.++.
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777776666666666665555443
No 349
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=24.23 E-value=2.7e+02 Score=31.23 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHHHHHHhh-CCCc
Q 001361 889 ELERTTRQLKEALAVAGEE--TAKCRAAKDVIKSLTAQLKDMAEM-LPVG 935 (1092)
Q Consensus 889 ei~~~~~~~~ea~~~a~ee--~~k~~~ake~ik~l~~qlk~~~e~-lp~~ 935 (1092)
+++.....++++..|+.|| .+=...|++-|+.|..+|.++..+ ||.+
T Consensus 72 ~~~~~~~d~~~~~el~~~e~D~e~~~~a~~e~~~l~~~l~~le~~~ll~~ 121 (365)
T 1gqe_A 72 QMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSG 121 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHGGGGGCCS
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3444455667777777664 223356888889999998888654 5655
No 350
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.18 E-value=2.7e+02 Score=32.26 Aligned_cols=17 Identities=6% Similarity=0.081 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRK 882 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~ 882 (1092)
+||+.+.-.+|+..+..
T Consensus 102 LqeLe~~l~~lsn~Ts~ 118 (464)
T 1m1j_B 102 LRDLKDRVAKFSDTSTT 118 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhH
Confidence 44444444444443333
No 351
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.17 E-value=1.2e+02 Score=24.88 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTT 894 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~ 894 (1092)
+|..|..+...|..+.+.+..|+..++
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444333
No 352
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=24.12 E-value=1e+03 Score=28.69 Aligned_cols=109 Identities=19% Similarity=0.171 Sum_probs=59.7
Q ss_pred CEEEEEec--CceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccC--CCcEEEEEeC----CCeEEEEEeCCc
Q 001361 306 DVQNIACG--GRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALK--NINVELVACG----EHHTCAVTLSGD 377 (1092)
Q Consensus 306 ~I~~Ia~G--~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~--~~~I~~Ia~G----~~hs~aLT~dG~ 377 (1092)
.|..|+.. +...+.-..||.|..|-.... ....+..+. ...|..|+.. ....+....||.
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCC------------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence 35555443 233444567899999953210 112222222 2467788764 445666678899
Q ss_pred EEEeCCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCC----CeEEEEEcCCcEEEeecC
Q 001361 378 MYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGP----WHTAVVTSAGQLFTFGDG 439 (1092)
Q Consensus 378 Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~----~Ht~aLt~dG~Vy~wG~N 439 (1092)
|+.|-... +. ......+. .....|..++... ...+..+.+|.|+.|-..
T Consensus 79 I~vwd~~~---~~--------~~~~~~~~--~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 79 VLIWKEEN---GR--------WSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp EEEEEEET---TE--------EEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred EEEEECCC---Cc--------cccccccc--CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 99996441 10 00111111 1233577776653 356667788999999644
No 353
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=24.11 E-value=7.2e+02 Score=27.04 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=54.7
Q ss_pred CceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeec-cCCCcEEEEEeCC--CeEEEEEeCCcEEEeCCccCCCCc
Q 001361 314 GRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDA-LKNINVELVACGE--HHTCAVTLSGDMYTWGGSNCNFGL 390 (1092)
Q Consensus 314 ~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~-l~~~~I~~Ia~G~--~hs~aLT~dG~Vy~wG~n~~~~Gq 390 (1092)
..+.+++--|+.||.|-.... ++ -..+.. -....|..|+... .+.+.-+.||.|..|-... +.
T Consensus 115 ~~n~lAvgld~tV~lWd~~tg-~~----------~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~---~~ 180 (420)
T 4gga_A 115 SGNVLAVALDNSVYLWSASSG-DI----------LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ---QK 180 (420)
T ss_dssp TTSEEEEEETTEEEEEETTTC-CE----------EEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT---TE
T ss_pred CCCEEEEEeCCEEEEEECCCC-CE----------EEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC---Cc
Confidence 445666777999999964432 10 011111 1123577777643 3444456789999996441 11
Q ss_pred cCCCCCcceecceeecCCCCCCcEEEEEeCCCeEEEEEcCCcEEEeec
Q 001361 391 LGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGD 438 (1092)
Q Consensus 391 LG~g~~~~~~~P~~v~~~l~~~~I~~IscG~~Ht~aLt~dG~Vy~wG~ 438 (1092)
....+.+ ....|..++......+.-..++.++.|-.
T Consensus 181 ----------~~~~~~~--h~~~v~~~s~~~~~l~sgs~d~~i~~~d~ 216 (420)
T 4gga_A 181 ----------RLRNMTS--HSARVGSLSWNSYILSSGSRSGHIHHHDV 216 (420)
T ss_dssp ----------EEEEECC--CSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred ----------EEEEEeC--CCCceEEEeeCCCEEEEEeCCCceeEeee
Confidence 0111111 13356777766666666677788887753
No 354
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=24.05 E-value=56 Score=30.25 Aligned_cols=10 Identities=10% Similarity=0.282 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 001361 920 SLTAQLKDMA 929 (1092)
Q Consensus 920 ~l~~qlk~~~ 929 (1092)
.|..+|+.+.
T Consensus 25 ~lkeel~~L~ 34 (109)
T 2wg5_A 25 HLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3444444444
No 355
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=23.91 E-value=7.5e+02 Score=27.12 Aligned_cols=201 Identities=11% Similarity=0.087 Sum_probs=93.8
Q ss_pred eEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEe---CCCeEEEEEeCCcEEEeCCccCCCCccC
Q 001361 316 HAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVAC---GEHHTCAVTLSGDMYTWGGSNCNFGLLG 392 (1092)
Q Consensus 316 hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~---G~~hs~aLT~dG~Vy~wG~n~~~~GqLG 392 (1092)
+.+.-..+|.|+.|-.+..+..+ ....+..........|..|+. +....+....+|.|+.|-... ...
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~--~~~-- 266 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN--NNT-- 266 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC--SCS--
T ss_pred eEEEEeCCCeEEEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC--CCC--
Confidence 55555678999999866532211 001111111112335777776 344555566799999996541 100
Q ss_pred CCCCcceecceeecCCCCCCcEEEEEeCCC---eEEEEEcCCcEEEeecCCCcccCCCCCcccccceeeecCCCCeEEEE
Q 001361 393 HGNEMSLWLPKKLNGPLEGIHVSSVSCGPW---HTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRA 469 (1092)
Q Consensus 393 ~g~~~~~~~P~~v~~~l~~~~I~~IscG~~---Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~V 469 (1092)
... ...+. .....|..|+.... ..+.-..+|.|..|-....++. ...+.. ....|..|
T Consensus 267 ---~~~---~~~~~--~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~----------~~~~~~-h~~~v~~i 327 (430)
T 2xyi_A 267 ---SKP---SHTVD--AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK----------LHSFES-HKDEIFQV 327 (430)
T ss_dssp ---SSC---SEEEE--CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC----------SEEEEC-CSSCEEEE
T ss_pred ---Ccc---eeEee--cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC----------eEEeec-CCCCEEEE
Confidence 000 00111 11234666666432 3444567899999975432210 011111 12245555
Q ss_pred ecCCce--EEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEeccc--CCCCeEEEEeeCc---EEEE
Q 001361 470 ACGVWH--TAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAAL--VEPNFCQVSCGHS---LTVA 542 (1092)
Q Consensus 470 acG~~h--t~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l--~~~~I~~Ia~G~~---htla 542 (1092)
+..... .++.. ..+|.|..|-....+............|..+... ....|..++.... ..+.
T Consensus 328 ~~sp~~~~~l~s~-----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 396 (430)
T 2xyi_A 328 QWSPHNETILASS-----------GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS 396 (430)
T ss_dssp EECSSCTTEEEEE-----------ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE
T ss_pred EECCCCCCEEEEE-----------eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE
Confidence 544332 22222 1578888886543221110000000011222211 1234666655433 4555
Q ss_pred EecCCcEEEEeCC
Q 001361 543 LTTTGHVYTMGSP 555 (1092)
Q Consensus 543 Lt~dG~Vy~wG~N 555 (1092)
...+|.|.+|--+
T Consensus 397 ~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 397 VSEDNIMQVWQMA 409 (430)
T ss_dssp EETTSEEEEEEEC
T ss_pred EECCCCEEEeEcc
Confidence 6678888888643
No 356
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=23.81 E-value=95 Score=31.36 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=33.0
Q ss_pred CCCCCCCeEEEEEcC--ceeEEEeCCHHHHHHHHHHHHHHH
Q 001361 84 RPEKEYQSFSLIYND--RSLDLICKDKDEAEVWFTGLKALI 122 (1092)
Q Consensus 84 ~~~~~~~~FSiiy~~--rsLDLia~~~~e~~~Wv~gL~~Li 122 (1092)
..+++.++|=|.--+ .|+=|-|+|..++..|+..|..=|
T Consensus 136 ~tD~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sni 176 (178)
T 2adz_A 136 PTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQI 176 (178)
T ss_dssp SSCCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHhc
Confidence 345678999999955 789999999999999999987654
No 357
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=23.73 E-value=2e+02 Score=25.13 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001361 871 KLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLK 926 (1092)
Q Consensus 871 ~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk 926 (1092)
.|--+|..|+-+.+.+|-|=..+.+|++- .||-|-+|..||.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKs--------------TK~El~~Lq~qLe 64 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKA--------------TKAEVAQLQEQVA 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHH
Confidence 45558888999988888888888887765 5566666766654
No 358
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=23.71 E-value=1.4e+02 Score=25.89 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=30.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 859 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 859 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
..-|+++.+=|..|+.+...|.++.+.+..|.+.++++++
T Consensus 39 ~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 39 LSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777778888888888888888888888777765
No 359
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=23.58 E-value=2e+02 Score=22.89 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 001361 885 LQEIELERTTRQLKE 899 (1092)
Q Consensus 885 ~~~~ei~~~~~~~~e 899 (1092)
++..+-+.++++++|
T Consensus 29 elkkkweelkkkiee 43 (67)
T 1lq7_A 29 ELKKKWEELKKKIEE 43 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444445555544
No 360
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=23.48 E-value=6.8e+02 Score=26.50 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=38.2
Q ss_pred CEEEEEec------C---ceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccC----CCcEEEEEeC------C
Q 001361 306 DVQNIACG------G---RHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALK----NINVELVACG------E 366 (1092)
Q Consensus 306 ~I~~Ia~G------~---~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~----~~~I~~Ia~G------~ 366 (1092)
.|..|+.. . ...+....+|.|+.|-...... ........+.... ...|..++.. .
T Consensus 64 ~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 137 (397)
T 1sq9_A 64 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL 137 (397)
T ss_dssp CEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----
T ss_pred cEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCC
Confidence 56666544 2 3445556789999996433211 0000012222221 2456666655 3
Q ss_pred Ce-EEEEEeCCcEEEeCCc
Q 001361 367 HH-TCAVTLSGDMYTWGGS 384 (1092)
Q Consensus 367 ~h-s~aLT~dG~Vy~wG~n 384 (1092)
.+ .++...+|.|+.|-..
T Consensus 138 ~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 138 SHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp CEEEEEEETTSCEEEEEEE
T ss_pred ceEEEEEeCCCcEEEEeCC
Confidence 44 5555678999999644
No 361
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=23.45 E-value=5.9e+02 Score=25.79 Aligned_cols=13 Identities=38% Similarity=0.409 Sum_probs=7.8
Q ss_pred EEEEecCCcEEEE
Q 001361 540 TVALTTTGHVYTM 552 (1092)
Q Consensus 540 tlaLt~dG~Vy~w 552 (1092)
.++++.+|++|+.
T Consensus 255 ~i~~~~~g~l~vs 267 (286)
T 1q7f_A 255 DVALMDDGSVVLA 267 (286)
T ss_dssp EEEEETTTEEEEE
T ss_pred eEEECCCCcEEEE
Confidence 4556666666655
No 362
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=23.42 E-value=2.8e+02 Score=27.51 Aligned_cols=52 Identities=10% Similarity=0.203 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------hhHHHHHHHHHHHHHHHH
Q 001361 878 ELTRKSQLQEIELERTTRQLKEALAVAGEETAKC----------RAAKDVIKSLTAQLKDMA 929 (1092)
Q Consensus 878 ~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~----------~~ake~ik~l~~qlk~~~ 929 (1092)
.++++++.+-.+|.+..++++..+.-...+.++. +..+-...+|..+|+++.
T Consensus 78 ~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m 139 (180)
T 1s94_A 78 QMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKTQYSTISRKFVEVM 139 (180)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666665554444333222211 233445556666666554
No 363
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=23.39 E-value=1.4e+02 Score=24.66 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERT 893 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~ 893 (1092)
+|..|..+-..|..+.+.+..|++.+
T Consensus 31 ~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 31 ETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 364
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=23.36 E-value=45 Score=29.33 Aligned_cols=25 Identities=16% Similarity=0.440 Sum_probs=20.3
Q ss_pred ccCCCCCcCCcccccccccccccce
Q 001361 659 SMCSGCRIPFNFKRKRHNCYNCGLV 683 (1092)
Q Consensus 659 s~C~~C~~~F~~~~krhhC~~CG~v 683 (1092)
..|..|+++..+..+.++|..|+.-
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~ 27 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKD 27 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCE
T ss_pred CCCCCCCCccccCCCceECcccccc
Confidence 4699999999888777778888765
No 365
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=23.27 E-value=55 Score=23.63 Aligned_cols=29 Identities=34% Similarity=0.382 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTRQL 897 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~ 897 (1092)
|.+|...|+.|-.+-..++.|+.+++.-+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 55677778888877778888888776543
No 366
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.11 E-value=4.5e+02 Score=24.73 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLK 926 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk 926 (1092)
..|+..|+.+|.+|.-+.+.+......+...+.|+-..-..+.+ -+...|-.|-++|.
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~---~~q~~i~~lE~eL~ 94 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLA---QIQEMIGSVEEQLA 94 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 44444444444444444444443333334444443332222222 24445555555444
No 367
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=23.08 E-value=1.3e+02 Score=26.46 Aligned_cols=24 Identities=13% Similarity=0.329 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 873 RAQVEELTRKSQLQEIELERTTRQ 896 (1092)
Q Consensus 873 ~~qv~~L~~~~~~~~~ei~~~~~~ 896 (1092)
+.+|..|+-+.|.+.-+|+.++++
T Consensus 33 q~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 33 QSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333333333334444444443333
No 368
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=23.03 E-value=7.7e+02 Score=26.96 Aligned_cols=237 Identities=8% Similarity=0.018 Sum_probs=121.8
Q ss_pred EEEEEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeecc--CCCcEEEEEeCCC-eEEEEEeCCcEEEeCC
Q 001361 307 VQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDAL--KNINVELVACGEH-HTCAVTLSGDMYTWGG 383 (1092)
Q Consensus 307 I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l--~~~~I~~Ia~G~~-hs~aLT~dG~Vy~wG~ 383 (1092)
+..++......+.-..||.|..|-.... ..+..+ ....|..++.... ..+.-..||.|..|-.
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~--------------~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINK--------------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEET
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCC--------------cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEEC
Confidence 4456666667777789999999974332 122222 2235777776533 5555677899999964
Q ss_pred ccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeC----CCeEEEEEcCCcEEEeecCCCcccCCCCCc---------
Q 001361 384 SNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCG----PWHTAVVTSAGQLFTFGDGTFGVLGHGDRI--------- 450 (1092)
Q Consensus 384 n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG----~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~--------- 450 (1092)
.. +. ....+.. ....|..++.- ....+.-+.+|.|+.|-......+......
T Consensus 191 ~~---~~----------~~~~~~~--h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
T 3v7d_B 191 KK---GC----------CTHVFEG--HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255 (464)
T ss_dssp TT---TE----------EEEEECC--CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred CC---Cc----------EEEEECC--CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence 31 10 1111221 12245555442 245666678899999975543222110000
Q ss_pred ccccceeeecC--CCCeEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCC
Q 001361 451 SVSTPREVDSL--KGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEP 528 (1092)
Q Consensus 451 ~~~~P~~V~~l--~~~~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~ 528 (1092)
....+..+..+ ....+..+.......+... .+|.|+.|-.... .+.........
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~------------~d~~i~vwd~~~~------------~~~~~~~~~~~ 311 (464)
T 3v7d_B 256 PEENPYFVGVLRGHMASVRTVSGHGNIVVSGS------------YDNTLIVWDVAQM------------KCLYILSGHTD 311 (464)
T ss_dssp GGGCTTEEEEECCCSSCEEEEEEETTEEEEEE------------TTSCEEEEETTTT------------EEEEEECCCSS
T ss_pred cCCCeEEEEEccCccceEEEEcCCCCEEEEEe------------CCCeEEEEECCCC------------cEEEEecCCCC
Confidence 00001111111 1123444443333333322 5888888864321 11111111223
Q ss_pred CeEEEEeeC--cEEEEEecCCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEEEcCCEEEEEEcCCeEEEEeC
Q 001361 529 NFCQVSCGH--SLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGK 606 (1092)
Q Consensus 529 ~I~~Ia~G~--~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~HslaLT~dG~Vy~WG~ 606 (1092)
.|..++... ...+.-..+|.|+.|-... | .....+. .....|..++....+.+.-..||.|..|-.
T Consensus 312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~---------~~~~~~~--~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~ 379 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASMDTTIRIWDLEN-G---------ELMYTLQ--GHTALVGLLRLSDKFLVSAAADGSIRGWDA 379 (464)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTT-T---------EEEEEEC--CCSSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCC-C---------cEEEEEe--CCCCcEEEEEEcCCEEEEEeCCCcEEEEEC
Confidence 455555443 3556667788899986432 1 1111111 123457888887788888889999999976
Q ss_pred CC
Q 001361 607 GA 608 (1092)
Q Consensus 607 n~ 608 (1092)
..
T Consensus 380 ~~ 381 (464)
T 3v7d_B 380 ND 381 (464)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 369
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=22.98 E-value=6.6e+02 Score=26.16 Aligned_cols=241 Identities=14% Similarity=0.118 Sum_probs=116.7
Q ss_pred CEEEEEec--CceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccC--CCcEEEEEeC----CCeEEEEEeCCc
Q 001361 306 DVQNIACG--GRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALK--NINVELVACG----EHHTCAVTLSGD 377 (1092)
Q Consensus 306 ~I~~Ia~G--~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~--~~~I~~Ia~G----~~hs~aLT~dG~ 377 (1092)
.|..|+.. ....+.-..||.|+.|=... .....+..+. ...|..|+.. ....+....||.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEG------------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEET------------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCC------------CcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 46666654 33344445789999995421 0112222222 2467777764 456666677899
Q ss_pred EEEeCCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCC----CeEEEEEcCCcEEEeecCCCcccCCCCCcccc
Q 001361 378 MYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGP----WHTAVVTSAGQLFTFGDGTFGVLGHGDRISVS 453 (1092)
Q Consensus 378 Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~----~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~ 453 (1092)
|+.|-... + .+.+.... ......|..++... ...+....+|.|+.|-.......
T Consensus 81 v~iwd~~~---~---------~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--------- 138 (379)
T 3jrp_A 81 VLIWKEEN---G---------RWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT--------- 138 (379)
T ss_dssp EEEEEEET---T---------EEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC---------
T ss_pred EEEEEcCC---C---------ceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce---------
Confidence 99996441 1 00111111 11233577776654 35666678899999964432110
Q ss_pred cceeeecCCCCeEEEEecCC--------------ceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceee
Q 001361 454 TPREVDSLKGLRTVRAACGV--------------WHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVP 519 (1092)
Q Consensus 454 ~P~~V~~l~~~~I~~VacG~--------------~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P 519 (1092)
.+..+.. ....|..++... ...++.. ..+|.|+.|-..... ....+
T Consensus 139 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~dg~i~i~d~~~~~--------~~~~~ 198 (379)
T 3jrp_A 139 SPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTG-----------GADNLVKIWKYNSDA--------QTYVL 198 (379)
T ss_dssp CEEEEEC-CTTCEEEEEECCCC----------CTTCEEEEE-----------ETTSCEEEEEEETTT--------TEEEE
T ss_pred eeEEecC-CCCceEEEEEcCccccccccccCCCCCCEEEEE-----------eCCCeEEEEEecCCC--------cceee
Confidence 1111111 112344444332 2223222 157888888532110 01111
Q ss_pred EEecccCCCCeEEEEeeC-----cEEEEEecCCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEEEcCC--EE
Q 001361 520 TCVAALVEPNFCQVSCGH-----SLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDY--HV 592 (1092)
Q Consensus 520 ~~V~~l~~~~I~~Ia~G~-----~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~--Hs 592 (1092)
..........|..++... ...+....+|.|+.|-...... ..........-....|..++.... ..
T Consensus 199 ~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~~g~~l 271 (379)
T 3jrp_A 199 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG-------PWKKTLLKEEKFPDVLWRASWSLSGNVL 271 (379)
T ss_dssp EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS-------CCEEEESSSSCCSSCEEEEEECSSSCCE
T ss_pred EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc-------cceeeeeccccCCCcEEEEEEcCCCCEE
Confidence 111111234566666543 3455566789999996432110 000011111112344666666443 34
Q ss_pred EEEEcCCeEEEEeCC
Q 001361 593 AVLTSRTEVYTWGKG 607 (1092)
Q Consensus 593 laLT~dG~Vy~WG~n 607 (1092)
++-..+|.|+.|=.+
T Consensus 272 ~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 272 ALSGGDNKVTLWKEN 286 (379)
T ss_dssp EEEESSSSEEEEEEE
T ss_pred EEecCCCcEEEEeCC
Confidence 444678999998654
No 370
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=22.89 E-value=96 Score=27.19 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIE 889 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~e 889 (1092)
..||.||++.....+.++..+-.+
T Consensus 21 kkevkKL~~~A~q~kmdLHDLaEd 44 (81)
T 3csx_A 21 KKKVRKLNSKAGQMKMDLHDLAEG 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 467888888776666666655543
No 371
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=22.79 E-value=8.7e+02 Score=27.48 Aligned_cols=215 Identities=10% Similarity=0.023 Sum_probs=0.0
Q ss_pred CEEEEEecCc---eEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCC---cEEEEEeCCC---eEEEEEeCC
Q 001361 306 DVQNIACGGR---HAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNI---NVELVACGEH---HTCAVTLSG 376 (1092)
Q Consensus 306 ~I~~Ia~G~~---hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~---~I~~Ia~G~~---hs~aLT~dG 376 (1092)
.|..++.... ..+....+|.|+.|-... ..+...-..... .|..++.... ..+..+.+|
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPP------------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR 229 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTT------------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeCCC------------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCC
Q ss_pred cEEEeCCccCCCCccCCCCCcceecceeecCC-----CCCCcEEEEEe-CCCeEEEEEcCCcEEEeecCCCcccCCCCCc
Q 001361 377 DMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGP-----LEGIHVSSVSC-GPWHTAVVTSAGQLFTFGDGTFGVLGHGDRI 450 (1092)
Q Consensus 377 ~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~-----l~~~~I~~Isc-G~~Ht~aLt~dG~Vy~wG~N~~GQLG~g~~~ 450 (1092)
.|+.|-.. ....+... .....|..++. ...+.+....+|.|..|
T Consensus 230 ~i~vwd~~----------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~w-------------- 279 (615)
T 1pgu_A 230 KISCFDGK----------------SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW-------------- 279 (615)
T ss_dssp CEEEEETT----------------TCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEE--------------
T ss_pred eEEEEECC----------------CCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEE--------------
Q ss_pred ccccceeeecCCCC------eEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecc
Q 001361 451 SVSTPREVDSLKGL------RTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAA 524 (1092)
Q Consensus 451 ~~~~P~~V~~l~~~------~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~ 524 (1092)
.......+..+... .+..+.......++... .+|.|+.|-.... .+.....
T Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~g~i~~~d~~~~------------~~~~~~~ 336 (615)
T 1pgu_A 280 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS-----------LDGTLNFYELGHD------------EVLKTIS 336 (615)
T ss_dssp ETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEE-----------TTSCEEEEETTEE------------EEEEEEC
T ss_pred ECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEE-----------CCCCEEEEECCCC------------cEEEEEe
Q ss_pred cCCCCeEEEEeeCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEEEc-CCEEEEEEcCCeEEE
Q 001361 525 LVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACG-DYHVAVLTSRTEVYT 603 (1092)
Q Consensus 525 l~~~~I~~Ia~G~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G-~~HslaLT~dG~Vy~ 603 (1092)
.....|..++. .. .+.-..+|.|+.|-.. .+. ......|..++.. ....+.-..+|.|..
T Consensus 337 ~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~----------------~~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 337 GHNKGITALTV-NP-LISGSYDGRIMEWSSS----------------SMH-QDHSNLIVSLDNSKAQEYSSISWDDTLKV 397 (615)
T ss_dssp CCSSCEEEEET-TT-TEEEETTSCEEETTTT----------------EEE-CCCCSCEEEEECCSTTCCEEEETTTEEEE
T ss_pred CCCCCEEEEEe-cC-cEEECCCCeEEEEEch----------------hhc-CcccCceEEEEECCCcEEEEEeCCCCEEE
Q ss_pred E
Q 001361 604 W 604 (1092)
Q Consensus 604 W 604 (1092)
|
T Consensus 398 ~ 398 (615)
T 1pgu_A 398 N 398 (615)
T ss_dssp T
T ss_pred E
No 372
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=22.61 E-value=1.9e+02 Score=27.31 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQ 886 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~ 886 (1092)
++..+|+.||..|+++++.+
T Consensus 7 ~~~~~L~~~i~~l~~~L~~l 26 (122)
T 3viq_A 7 SRRLKLEKEVRNLQEQLITA 26 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444
No 373
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.55 E-value=98 Score=27.96 Aligned_cols=50 Identities=16% Similarity=0.247 Sum_probs=37.1
Q ss_pred CCCCCcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 851 GLASPKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEA 900 (1092)
Q Consensus 851 ~~~~~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea 900 (1092)
|-.|-+...+++... ...+..+..+++.|..+.+.++.+++.+++++.+.
T Consensus 55 G~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 55 GNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555556666666 66667777888888888888888888888888753
No 374
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=22.45 E-value=1.7e+02 Score=31.14 Aligned_cols=26 Identities=23% Similarity=0.581 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhCCCc
Q 001361 910 KCRAAKDVIKSLTAQLKDMAEMLPVG 935 (1092)
Q Consensus 910 k~~~ake~ik~l~~qlk~~~e~lp~~ 935 (1092)
-++.|++.|+.+..++++|++.||+.
T Consensus 72 ~~~eA~~~l~~i~~~~~~L~~~l~~~ 97 (249)
T 3axj_A 72 ACGLARKQVELCAQKYQKLAELVPAG 97 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 37788899999999999999999864
No 375
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.34 E-value=1.8e+02 Score=25.36 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKS 883 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~ 883 (1092)
.+|-.+|+.+|+.+...+
T Consensus 33 L~EN~~Lh~~ie~~~eEi 50 (79)
T 2zxx_A 33 LKENEKLHKEIEQKDSEI 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556566665555444443
No 376
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=22.29 E-value=1.7e+02 Score=32.65 Aligned_cols=38 Identities=11% Similarity=0.397 Sum_probs=30.6
Q ss_pred CeEEEEE------c--CceeEEEeCCHHHHHHHHHHHHHHHHcccc
Q 001361 90 QSFSLIY------N--DRSLDLICKDKDEAEVWFTGLKALISRSHY 127 (1092)
Q Consensus 90 ~~FSiiy------~--~rsLDLia~~~~e~~~Wv~gL~~Li~~~~~ 127 (1092)
..|-|+. + .+++-|.|.++++.+.|+..|+.+|...+.
T Consensus 325 ~~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~~~~~ 370 (377)
T 1foe_A 325 AVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILRDKHR 370 (377)
T ss_dssp CEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHhhHHhh
Confidence 3477774 2 368999999999999999999999976543
No 377
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.24 E-value=67 Score=37.14 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=0.0
Q ss_pred chhhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 857 IVVDDAKRT----SEEVIKLRAQVEELTRKSQLQEIELERTTR 895 (1092)
Q Consensus 857 ~~~~~l~~~----~qev~~l~~qv~~L~~~~~~~~~ei~~~~~ 895 (1092)
++-++|.+. ...|+.|..||..|.++++.++.||++.++
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 429 ALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 378
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=22.23 E-value=2e+02 Score=25.83 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001361 883 SQLQEIELERTTRQLKEA 900 (1092)
Q Consensus 883 ~~~~~~ei~~~~~~~~ea 900 (1092)
.+.++-||..+.++|++|
T Consensus 69 v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 69 IKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 379
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=22.00 E-value=12 Score=30.89 Aligned_cols=29 Identities=28% Similarity=0.732 Sum_probs=22.4
Q ss_pred ccCCCCCcCCcccccccccccccceEEecc
Q 001361 659 SMCSGCRIPFNFKRKRHNCYNCGLVYCHTC 688 (1092)
Q Consensus 659 s~C~~C~~~F~~~~krhhC~~CG~v~C~~C 688 (1092)
..|-+|..+|.- ..+..|..|...||..|
T Consensus 16 ~~C~~C~~~~~~-~~~y~C~~C~~~FC~dC 44 (59)
T 1z60_A 16 RFCYGCQGELKD-QHVYVCAVCQNVFCVDC 44 (59)
T ss_dssp CEETTTTEECTT-SEEECCTTTTCCBCHHH
T ss_pred CcccccCcccCC-CccEECCccCcCcccch
Confidence 459999988852 22366999999999988
No 380
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.97 E-value=2.5e+02 Score=40.59 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELE 891 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~ 891 (1092)
.++|.+|+.++..++.++++...|.+
T Consensus 1933 ~~~V~~l~~~L~~~~~~L~~k~~ea~ 1958 (3245)
T 3vkg_A 1933 EAQVKDLQVSLAQKNRELDVKNEQAN 1958 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766655555544443333
No 381
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=21.97 E-value=2e+02 Score=23.01 Aligned_cols=26 Identities=4% Similarity=0.148 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELER 892 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~ 892 (1092)
-+|..|-.+|..|..+...+..+++.
T Consensus 11 s~V~~L~~kVdqLssdV~al~~~v~~ 36 (52)
T 1jcd_A 11 SDAQTANAKADQASNDANAARSDAQA 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 382
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=21.95 E-value=2.4e+02 Score=25.39 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHh
Q 001361 866 SEEVIKLRAQVEELT----RKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 930 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~----~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e 930 (1092)
.+||-+|+.+-.+|. ++++.-+.+++++.+.++.-+.. |-|-|--|..+|+-+.|
T Consensus 26 q~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~----------a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 26 REEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEA----------AQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHh----------hHHHhHHHHHHHHHhHH
Confidence 788889999999997 67777777787777777775443 55666677777766654
No 383
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.93 E-value=2.6e+02 Score=24.59 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 875 QVEELTRKSQLQEIELERTTRQLKEALAVA 904 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a 904 (1092)
|.+.|-+..+.++.||.++++..++-..+|
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777778888888888877777744443
No 384
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=21.88 E-value=3.3e+02 Score=28.56 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=26.5
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 872 LRAQVEELTR------KSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 872 l~~qv~~L~~------~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
|..|+..|+. +...++.||.++.... ..+=|.=+--|++..||-.-.--.=|.|++||+
T Consensus 116 l~~~I~kLk~k~P~s~kl~~LeqELvraEae~--lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~ 180 (234)
T 3plt_A 116 ITDEIAHLKYKDPQSTKIPVLEQELVRAEAES--LVAEAQLSNITREKLKAAYSYMFDSLRELSEKF 180 (234)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHHHHHh--hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555553 4445555555543332 111112222355666665444444455556654
No 385
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=21.82 E-value=7.7e+02 Score=26.51 Aligned_cols=262 Identities=11% Similarity=0.082 Sum_probs=127.9
Q ss_pred ceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEE--EEeCCCeEEEEEeCCcEEEeCCccCCCCccC
Q 001361 315 RHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVEL--VACGEHHTCAVTLSGDMYTWGGSNCNFGLLG 392 (1092)
Q Consensus 315 ~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~--Ia~G~~hs~aLT~dG~Vy~wG~n~~~~GqLG 392 (1092)
...+++|.+|-|--.-...+.....+. .-..-+..-++..+.. ++.+..+.+++|+.|.+|..-.. ..-..|
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~----~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~--~ip~~~ 82 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGG----KGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAY--EIKDSS 82 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSC----CCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGG--GSCC--
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCC----CCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHH--HCCCCC
Confidence 456788999988765433332211110 0001111112233333 45577889999999999988543 111111
Q ss_pred CCCCcceecceeecCCCCCCcEEEEEeC-----CCeEEEEEcCCcEEEeecCCCccc-CCCCCcccccceeeecCCCCeE
Q 001361 393 HGNEMSLWLPKKLNGPLEGIHVSSVSCG-----PWHTAVVTSAGQLFTFGDGTFGVL-GHGDRISVSTPREVDSLKGLRT 466 (1092)
Q Consensus 393 ~g~~~~~~~P~~v~~~l~~~~I~~IscG-----~~Ht~aLt~dG~Vy~wG~N~~GQL-G~g~~~~~~~P~~V~~l~~~~I 466 (1092)
....- ......+. ..++..|+.+... ..+.+++|++|.++..-...|-.. +.| ... +..-.+..+
T Consensus 83 r~~~G-~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G--~~~-----i~L~~~d~l 153 (312)
T 1suu_A 83 RASKG-QNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRG--VIV-----IKLNDKDFV 153 (312)
T ss_dssp ------CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----C--EEC-----BCCCTTCCE
T ss_pred ccCCC-cChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCc--EEE-----EecCCCCEE
Confidence 11000 00111122 2346678877664 356899999999998875544211 111 000 111112334
Q ss_pred EEEe--cCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCCCeEEEEe--eCcEEEE
Q 001361 467 VRAA--CGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSC--GHSLTVA 542 (1092)
Q Consensus 467 ~~Va--cG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~--G~~htla 542 (1092)
+.+. .+..+-++++ ++|.++.+-..+.-..|....-.. .+....+..|+.+.. ...+.++
T Consensus 154 v~~~~~~~~~~i~l~T------------~~G~~~r~~~~ev~~~gR~~~Gv~----~i~L~~~d~vv~~~~v~~~~~l~~ 217 (312)
T 1suu_A 154 TSAEIVFKDEKVICLS------------KKGSAFIFNSRDVRLTNRGTQGVC----GMKLKEGDLFVKVLSVKENPYLLI 217 (312)
T ss_dssp EEEEEECTTCEEEEEE------------TTSEEEEEEGGGSCBCCTTBCCEE----CCCCCTTCCEEEEEECTTCSEEEE
T ss_pred EEEEEeCCCCEEEEEe------------CCCcEEEEEHHHccccCCCCCCeE----eEEeCCCCEEEEEEEECCCCeEEE
Confidence 4332 3445555555 688888876555433333211110 011112334444432 3456788
Q ss_pred EecCCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEE--EEcCCEEEEEEcCCeEEEEeCCCC
Q 001361 543 LTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEI--ACGDYHVAVLTSRTEVYTWGKGAN 609 (1092)
Q Consensus 543 Lt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~I--a~G~~HslaLT~dG~Vy~WG~n~~ 609 (1092)
+|++|.+..+--..+-..+.+........... -....++.+ .......+++|.+|.+.-.-....
T Consensus 218 vt~~G~~kr~~~~e~~~~~R~~kGv~~~~~~k--~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~i 284 (312)
T 1suu_A 218 VSENGYGKRLNMSKISELKRGATGYTSYKKSD--KKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKV 284 (312)
T ss_dssp EETTSEEEEEEGGGSCBCCTTCCCEECSCTTC--TTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGGS
T ss_pred EECCCceEEEEHHHhcccCCCCCCEEeeEccC--CCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEcccC
Confidence 89999888777666644444322211111100 011234332 235667788888898776655443
No 386
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=21.69 E-value=4.3e+02 Score=23.54 Aligned_cols=15 Identities=20% Similarity=0.312 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhC
Q 001361 918 IKSLTAQLKDMAEML 932 (1092)
Q Consensus 918 ik~l~~qlk~~~e~l 932 (1092)
|+.|.+.+.++-.||
T Consensus 79 ~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 79 RDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhC
Confidence 344555565555554
No 387
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.57 E-value=1.7e+02 Score=25.63 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 001361 914 AKDVIKSLTAQLKDMA 929 (1092)
Q Consensus 914 ake~ik~l~~qlk~~~ 929 (1092)
+-|++..=..+|.|+-
T Consensus 53 l~e~Ld~KI~eL~elR 68 (79)
T 3cvf_A 53 AAQLLDVSLFELSELR 68 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHH
Confidence 4444444444444443
No 388
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=21.53 E-value=4.6e+02 Score=25.42 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
+.|..|-.|+...+...+.-+.+.+...+|+.-+-.--..--.|..+|-.=|+.|-.+|+.|.+.|
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nl 117 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNL 117 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 389
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=21.38 E-value=3.2e+02 Score=25.28 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhhh--hhHHHHHHHHHHHHHHH
Q 001361 876 VEELTRKSQLQEIELERTTRQLKEALAVAG---EETAKC--RAAKDVIKSLTAQLKDM 928 (1092)
Q Consensus 876 v~~L~~~~~~~~~ei~~~~~~~~ea~~~a~---ee~~k~--~~ake~ik~l~~qlk~~ 928 (1092)
++.|....-.+|.+|-.+.+||++|..-+. +|.-|. .+=..+++.|-+.|.++
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeL 81 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDEL 81 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777788888888888766554 344332 23345666666655544
No 390
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=21.33 E-value=2.2e+02 Score=26.86 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhC
Q 001361 910 KCRAAKDVIKSLTAQLKDMAEML 932 (1092)
Q Consensus 910 k~~~ake~ik~l~~qlk~~~e~l 932 (1092)
+-+.=|+..+-|..|++.+-..|
T Consensus 65 ~~~~yk~~y~~l~k~Y~~~~keL 87 (119)
T 3etw_A 65 NTRFYKSQYQELASKYEDALKKL 87 (119)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666665554444
No 391
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=21.20 E-value=1.5e+02 Score=21.57 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTTRQL 897 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~ 897 (1092)
.|.+|...|+.|-.+-+.++.|+.+++.-+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 477788888888888888888888776543
No 392
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.15 E-value=1.1e+02 Score=32.48 Aligned_cols=16 Identities=13% Similarity=0.358 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 001361 914 AKDVIKSLTAQLKDMA 929 (1092)
Q Consensus 914 ake~ik~l~~qlk~~~ 929 (1092)
|++-|..|..||+.|.
T Consensus 80 ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 80 ARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5555666667777765
No 393
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=21.01 E-value=8.4e+02 Score=26.64 Aligned_cols=238 Identities=8% Similarity=0.045 Sum_probs=116.3
Q ss_pred CEEEEEec----CceEEEEEcCCeEEEEeCCCCCccCCCCCC---------CCCcceEeecc--CCCcEEEEEeCCCeEE
Q 001361 306 DVQNIACG----GRHAALVTKQGEVFSWGEELGGRLGHGVDS---------DVSHPKLIDAL--KNINVELVACGEHHTC 370 (1092)
Q Consensus 306 ~I~~Ia~G----~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~---------~~~~P~~V~~l--~~~~I~~Ia~G~~hs~ 370 (1092)
.|..++.. ....+.-..||.|..|-......+...... ....|..+..+ ....|..++......+
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 284 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 284 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEE
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEE
Confidence 45555442 245566678999999976543322111000 00111112222 2245777777777777
Q ss_pred EEEeCCcEEEeCCccCCCCccCCCCCcceecceeecCCCCCCcEEEEEeCC--CeEEEEEcCCcEEEeecCCCcccCCCC
Q 001361 371 AVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGP--WHTAVVTSAGQLFTFGDGTFGVLGHGD 448 (1092)
Q Consensus 371 aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IscG~--~Ht~aLt~dG~Vy~wG~N~~GQLG~g~ 448 (1092)
.-..+|.|+.|-.. . +. . ...+.. ....|..++... ...+.-..+|.|+.|-... |++
T Consensus 285 ~~~~d~~i~vwd~~--~-~~-------~---~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~---- 344 (464)
T 3v7d_B 285 SGSYDNTLIVWDVA--Q-MK-------C---LYILSG--HTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GEL---- 344 (464)
T ss_dssp EEETTSCEEEEETT--T-TE-------E---EEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEE----
T ss_pred EEeCCCeEEEEECC--C-Cc-------E---EEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcE----
Confidence 88889999999643 1 00 0 111111 123466665543 3566667889999996432 110
Q ss_pred CcccccceeeecCCCCeEEEEecCCceEEEEEEeeecCCCCccCCCCeEEEecCCCCCCcCCCCCCcceeeEEecccCCC
Q 001361 449 RISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEP 528 (1092)
Q Consensus 449 ~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~ 528 (1092)
...+.. ....|..++....+.+... .+|.|..|-.....+ ..........
T Consensus 345 ------~~~~~~-h~~~v~~~~~~~~~l~s~s------------~dg~v~vwd~~~~~~-----------~~~~~~~~~~ 394 (464)
T 3v7d_B 345 ------MYTLQG-HTALVGLLRLSDKFLVSAA------------ADGSIRGWDANDYSR-----------KFSYHHTNLS 394 (464)
T ss_dssp ------EEEECC-CSSCEEEEEECSSEEEEEE------------TTSEEEEEETTTCCE-----------EEEEECTTCC
T ss_pred ------EEEEeC-CCCcEEEEEEcCCEEEEEe------------CCCcEEEEECCCCce-----------eeeecCCCCc
Confidence 011111 1224555555544433333 689999996543211 1111111223
Q ss_pred CeEEEEeeCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCccceeeccccCCCCEEEEEEcCCE-EEEEEcCCeEEEEe
Q 001361 529 NFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYH-VAVLTSRTEVYTWG 605 (1092)
Q Consensus 529 ~I~~Ia~G~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~H-slaLT~dG~Vy~WG 605 (1092)
.+..+...... ++...+|.|+.|--.. |++ ...........|..|+.-... .++...+|.+|.|-
T Consensus 395 ~~~~~~~~~~~-l~~~~dg~i~iwd~~~-g~~----------~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 395 AITTFYVSDNI-LVSGSENQFNIYNLRS-GKL----------VHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CEEEEEECSSE-EEEEETTEEEEEETTT-CCE----------EESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred cEEEEEeCCCE-EEEecCCeEEEEECCC-CcE----------EehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEE
Confidence 44455554443 4444488999996432 111 100001123446666654444 34445677777764
No 394
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=20.86 E-value=5.5e+02 Score=26.96 Aligned_cols=125 Identities=12% Similarity=0.070 Sum_probs=68.1
Q ss_pred EEecCceEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEeC--CCeEEEEEeCCcEEEeCCccCC
Q 001361 310 IACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACG--EHHTCAVTLSGDMYTWGGSNCN 387 (1092)
Q Consensus 310 Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G--~~hs~aLT~dG~Vy~wG~n~~~ 387 (1092)
++.+..+.+++|+.|++|..-...-- .+..... .....+..-.+..|+.+... ..+.+++|++|.+.-.-.. .
T Consensus 40 ~~~t~~~ll~~T~~Gr~~~~~~~elp-~~r~~G~--~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~--e 114 (256)
T 1zvt_A 40 KGKSNQPVVFVDSTGRSYAIDPITLP-SARGQGE--PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFN--D 114 (256)
T ss_dssp EEETTSCEEEEETTSEEEEECGGGSC-CSSSCCE--EGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGG--G
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCC-CcCCCCe--EeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHH--H
Confidence 45566788999999999998754320 0110000 01112333346678887663 4457788999987766433 1
Q ss_pred CCccCCCCCcceecceeecCCCCCCcEEEE-E--eCCCeEEEEEcCCcEEEeecCCCcccCC
Q 001361 388 FGLLGHGNEMSLWLPKKLNGPLEGIHVSSV-S--CGPWHTAVVTSAGQLFTFGDGTFGVLGH 446 (1092)
Q Consensus 388 ~GqLG~g~~~~~~~P~~v~~~l~~~~I~~I-s--cG~~Ht~aLt~dG~Vy~wG~N~~GQLG~ 446 (1092)
+-....+. ..+...-++..++.+ . -+..+.+++|++|++..+-.+..-.+|.
T Consensus 115 ~~~~~r~G-------~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 115 LVARNRAG-------KALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp GCCCSTTC-------EECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred hcccCcCc-------eEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 10000000 001111122233332 2 3677899999999999887665544443
No 395
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.78 E-value=4.3e+02 Score=23.83 Aligned_cols=30 Identities=7% Similarity=0.127 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 869 VIKLRAQVEELTRKSQLQEIELERTTRQLK 898 (1092)
Q Consensus 869 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 898 (1092)
...++.++..|..+...+..+|+.+++.+.
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 396
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.64 E-value=44 Score=28.76 Aligned_cols=53 Identities=21% Similarity=0.370 Sum_probs=32.4
Q ss_pred ccccCCCCCcCCcccccccccccccceEEeccCCCcccccccCCCCCCCeeeCccchhhh
Q 001361 657 DQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKL 716 (1092)
Q Consensus 657 d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~~~~~~~~~~~~~k~~RVC~~C~~~l 716 (1092)
+...|..|...|.-....-.-..||..||..|-....... .....|..|...+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-------~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-------INGVRCPFCSKIT 66 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-------SSCBCCTTTCCCB
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-------CCCcCCCCCCCcc
Confidence 3456999988877543323345799999999965432211 1134577775543
No 397
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=20.63 E-value=48 Score=25.79 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=23.2
Q ss_pred ccccCCCCCcCCcccccccccccccceEEeccCCC
Q 001361 657 DQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSK 691 (1092)
Q Consensus 657 d~s~C~~C~~~F~~~~krhhC~~CG~v~C~~Css~ 691 (1092)
+...|..|...|.-...-.....||..||..|-..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~ 38 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDM 38 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHH
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHH
Confidence 44579999887765432222235999999999543
No 398
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=20.56 E-value=3.1e+02 Score=25.73 Aligned_cols=11 Identities=18% Similarity=0.489 Sum_probs=8.6
Q ss_pred HHHHHHHHHHH
Q 001361 916 DVIKSLTAQLK 926 (1092)
Q Consensus 916 e~ik~l~~qlk 926 (1092)
-|||.|+.+++
T Consensus 48 KIIkDisdkId 58 (129)
T 3f6n_A 48 KIVNDLTKLIN 58 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 38999998754
No 399
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.34 E-value=1.9e+02 Score=26.63 Aligned_cols=34 Identities=9% Similarity=0.044 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 899 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 899 (1092)
.+|+.+.++|+..|+++...+...++.+.+....
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDF 43 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQYKGTVSTLEIEREF 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444444444444443
No 400
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=20.32 E-value=1.3e+02 Score=34.47 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=53.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCCc
Q 001361 859 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQ---LKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVG 935 (1092)
Q Consensus 859 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~---~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp~~ 935 (1092)
.|.+...-++-.+++.+++.|+.+......+|.+++++ .++.++-+++=.++.|+.++-++.+.++|.++.-+||--
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 108 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNL 108 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45555446666777777777777777777777765433 223344455556677789999999999999998888754
No 401
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=20.22 E-value=2.2e+02 Score=36.74 Aligned_cols=38 Identities=29% Similarity=0.488 Sum_probs=32.7
Q ss_pred CCeEEEEEcC-ceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 001361 89 YQSFSLIYND-RSLDLICKDKDEAEVWFTGLKALISRSH 126 (1092)
Q Consensus 89 ~~~FSiiy~~-rsLDLia~~~~e~~~Wv~gL~~Li~~~~ 126 (1092)
..+|-|...+ +++-|.|.++++.+.|+..|+.+..+..
T Consensus 511 ~~~F~I~~~~~~~~~L~A~S~eeK~~Wi~~I~~~q~k~~ 549 (1049)
T 3ksy_A 511 KHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRST 549 (1049)
T ss_dssp CSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 4689988865 6899999999999999999999887544
No 402
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.22 E-value=3.4e+02 Score=24.56 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERTT 894 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~ 894 (1092)
..++.+|+++...|+.+.+.++..+..+.
T Consensus 16 ~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 16 EEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566655555555555555555443
No 403
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=20.17 E-value=75 Score=23.07 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 868 EVIKLRAQVEELTRKSQLQEIELERTTRQL 897 (1092)
Q Consensus 868 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~ 897 (1092)
.|.+|...|+.|=.+-..++.|+.++++-+
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 367788888888888888888888887654
No 404
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=20.14 E-value=93 Score=28.47 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 867 EEVIKLRAQVEELTRKSQLQEIELERT 893 (1092)
Q Consensus 867 qev~~l~~qv~~L~~~~~~~~~ei~~~ 893 (1092)
+.+.|++++++..+.+.+.+...|..+
T Consensus 6 eq~~k~~~el~~v~~n~~lL~EML~~~ 32 (103)
T 1wrd_A 6 EQIGKLRSELEMVSGNVRVMSEMLTEL 32 (103)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777778888888888888777764
No 405
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=20.11 E-value=5.3e+02 Score=23.95 Aligned_cols=49 Identities=27% Similarity=0.274 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCC
Q 001361 875 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLP 933 (1092)
Q Consensus 875 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ee~~k~~~ake~ik~l~~qlk~~~e~lp 933 (1092)
||..|+.+++.-+..|+.+++....+-.-+-++- .-|+.-.+.+.++|-
T Consensus 46 qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL----------~~Lt~~Re~V~~eL~ 94 (112)
T 1x79_B 46 QISALVLRAQASEILLEELQQGLSQAKRDVQEQM----------AVLMQSREQVSEELV 94 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 5566666666666555555555554433333333 335555555554443
No 406
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=20.09 E-value=2.1e+02 Score=28.24 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001361 866 SEEVIKLRAQVEELTRKSQLQEIELERT 893 (1092)
Q Consensus 866 ~qev~~l~~qv~~L~~~~~~~~~ei~~~ 893 (1092)
.+.+.|++++++..+.+.+++...|..+
T Consensus 52 ~e~~~k~~seLe~V~~nv~LL~EML~~~ 79 (158)
T 1naf_A 52 MEKISKRVNAIEEVNNNVKLLTEMVMSH 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5556666666666666666666666654
No 407
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.04 E-value=1.1e+02 Score=29.57 Aligned_cols=26 Identities=27% Similarity=0.662 Sum_probs=22.4
Q ss_pred ceeEEEeCCHHHHHHHHHHHHHHHHcc
Q 001361 99 RSLDLICKDKDEAEVWFTGLKALISRS 125 (1092)
Q Consensus 99 rsLDLia~~~~e~~~Wv~gL~~Li~~~ 125 (1092)
++.-|-|+++++++.|+.+|+ |-+..
T Consensus 88 r~y~l~cdsEeqy~~WMaA~r-lAskg 113 (137)
T 2ys3_A 88 SEIYLRCQDEQQYARWMAGCR-LASKG 113 (137)
T ss_dssp EEEEEEESSHHHHHHHHHHHH-HHHTS
T ss_pred eEEEEECCCHHHHHHHHHHHH-HhccC
Confidence 889999999999999999998 44443
Done!