Citrus Sinensis ID: 001362

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090--
Protein Sequence
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHccccccHHHHHHcccccEEEEHHHHHHHHccccHHHHHHHHcccccccccccEEEEHHHHHccHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEcccccccEEEccccccEEcccccccccccccccccccEEEEEcccccccEEccccEEEEEcccccccccccccEEEEEEccccccEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEEccccEEEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccEEEccccccEEEEEEcccccEEEEEcccccccEEEEEcccccEEEEcccccccEEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccccccEEEEcccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccEEEEEEccccEEEEccccccccccEEEcccccccccccEEEccccccEEEEEccccccEEEEEEEcccccEEEEEEcccEEEEEEEccccEEEEEEccccccEEEEEcccccEEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEccccEEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccccccccccccEEEEEccccEEEEEEcccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccccccccccEEcEEEEEEcccccEEEEEEccccEEEEcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccEEEHHHHHHHHHcccHHHHHHHHccccEcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEEEEEEccccccccHHHHcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEcccEEEEEcccccEEEEEcccccEEEEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEccccEEEEEEcccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccccccccccccEEEEEEccccccEEEEEccccEEEEEEcccccccccccccccEEEEcccccEEEEccccc
Coil and Loop (DISEMBL)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFtkvddnrystkIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEanpilqgklkfpsiKRQRLRRLINQSLNWQhvhcanpqpnpdintLFVDHVCqlqetdfsgqssesnalppqttqspsswnfsssmltdSAVSFVALslsdptnkavtmdrpedsdilsekspvrilneqastvtypgvslknipdyspksslkKEMFQsfgetsfsdfpKTVAQTLiegssspmsmdfhpVQHTLLLVGtnvgdtglwdvnsgqklFIRNFKVWDIGACSMLFKTAlvrdpgvsvnrvvwspdgsllgVAYSKHIVQLYAyhggsdarQQLEIdahvgnvndlafsapckqisvitcgddktikVWDAvtgsrtysfeghgapvyslcphakeniHFIFSISVDGKIKAWLYDSlgarvdydapglgctrmaysangrrlfscgtskegESFLVEWNESEGAIKRTYQglqlqhnsvsvvhfdtakdQILAAGDDHVIKIWDMNKVQLLTTidaggglpenpricfnknGTLLAVIANEnrikiletpesnsvdaagvlsdnlrklsvnpistvtgagiangsvsvnedpkedvkpeisveaenksevekplfarpsecqslllpskvkankisrltyNNGGQAIFALASNGVhlmwrwprndltlsteattkvpprlyqprhgpqfmvndttdsnsqeavpcfalskndaylfsaSGGVISLYIVMTFKTIltimppsptatslafnphdnnviaigmddstiLIYNARSSEVISKLEGHSKRVTGLVFSDALNILVssggdaqifvwdvdgwgiqtcrslqtpdgvmtlapsethiqfHKDQTRFLLVHETHLAIYEAEELTclkqwfpissvpisqatfscdcrmvftsfvdgtlsiheASNLEVQCRILSTaylrpttsclhvyphaiaahplkptqfavgltngevyviepnepgdtwavlppdeivgdqptstsegdramdg
Flexible Loop (DISEMBL)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSsftkvddnrysTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIeanpilqgklkFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLsdptnkavtmdrpedsdilsekspvrilneqastvtypgvslknipDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIsvitcgddktIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIletpesnsvdaAGVLSDNLRKLSVNPIStvtgagiangsvsvnedpkedVKPEisveaenksevekplfarpsecqslllpSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEivgdqptstsegdramdg
Low Complexity Region (SEG)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG
Disordered region (IsUnstruct)
******DLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQ*************************************************************************************************************************************FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET********AGVLSDNLRKLSVNPISTVTG*********************************************LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST*******************************AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL**********************
Disordered Region (DISOPRED)
**KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSD*TNKAVTMDRPEDS*ILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW*************************
Disordered Region (DISEMBL)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQET***********************NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV***********ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGD**************
Disordered Region (DISPRO)
**KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1092	2.2.26 [Sep-21-2011]
Q0WV90	1120	Topless-related protein 1	yes	no	0.963	0.939	0.544	0.0
Q94AI7	1131	Protein TOPLESS OS=Arabid	no	no	0.984	0.950	0.538	0.0
Q27GK7	1135	Topless-related protein 4	no	no	0.971	0.934	0.498	0.0
Q9LRZ0	1131	Topless-related protein 2	no	no	0.959	0.926	0.466	0.0
Q84JM4	1108	Topless-related protein 3	no	no	0.965	0.951	0.466	0.0
Q00808	1356	Vegetative incompatibilit	yes	no	0.262	0.211	0.274	9e-19
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.492	0.352	0.220	8e-15
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.467	0.405	0.220	2e-13
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.459	0.298	0.225	1e-11
P49695	742	Probable serine/threonine	no	no	0.231	0.340	0.254	2e-11

>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3

 Score = 1187 bits (3071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1119 (54%), Positives = 778/1119 (69%), Gaps = 67/1119 (5%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD  KA++IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP+++  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C+L               G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
            Q T SP     + W  S S +   AVS   ++L  P+ +A             +D P  D
Sbjct: 240  QPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYPSGD 299

Query: 268  SDILSEKS-PVRILNEQASTV-----TYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 321
            SD +S+++ P+ I +E +  V     T+PG           ++    + F++       D
Sbjct: 300  SDHVSKRTRPMGISDEVSLGVNMLPMTFPG-----------QAHGHNQTFKAP-----DD 343

Query: 322  FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIG 381
             PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  + FKVWD+ 
Sbjct: 344  LPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLS 402

Query: 382  ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
             CSM  + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHV
Sbjct: 403  KCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHV 462

Query: 442  GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 501
            G VND+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI F
Sbjct: 463  GGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQF 522

Query: 502  IFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561
            IFS ++DGKIKAWLYD++G+RVDY+APG  CT MAYSA+G RLFSCGTSK+GESF+VEWN
Sbjct: 523  IFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWN 582

Query: 562  ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621
            ESEGA+KRTYQG      S+ VV FDT K++ LAAGDD  IK WDM+ +QLLT IDA GG
Sbjct: 583  ESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGG 640

Query: 622  LPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTG 680
            L  +PRI FNK G+LLAV AN+N IK++   +    +     LS    K ++N I  V  
Sbjct: 641  LQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVER 700

Query: 681  AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKI 737
                     +N D +   DVKP I+ E+ +KS+V K      PS+C+SL LP  ++  KI
Sbjct: 701  PASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKI 760

Query: 738  SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797
            SRL + N G AI ALASN +HL+W+W RND   + +AT  +PP+ +QP  G   M ND  
Sbjct: 761  SRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASG-ILMTNDVA 819

Query: 798  DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 857
            ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN
Sbjct: 820  ETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 879

Query: 858  VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917
            +IAIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DG
Sbjct: 880  IIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDG 939

Query: 918  WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI- 976
            W  Q  + LQ P G  T + S+T +QFH+DQ  FL+VHET LAIYE  +L C+KQW P+ 
Sbjct: 940  WEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQW-PVR 998

Query: 977  -SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035
             S+ PI+ ATFSCD ++++TSF+D T+ +  ++NL ++CR+  +AYL  + S  +V+P  
Sbjct: 999  ESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLV 1058

Query: 1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
            IAAHP +   FAVGL++G V++ EP E    W V PP E
Sbjct: 1059 IAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097

Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1

 Score = 1179 bits (3050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1143 (53%), Positives = 787/1143 (68%), Gaps = 68/1143 (5%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD  KA++IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP+++  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
            Q T SP     + W  S S +   AVS  A++L  P+  A            ++D P  D
Sbjct: 240  QPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYPSAD 299

Query: 268  SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 326
            S+ +S+++ P+ I +E    V    +S      +S ++      F++       D PKTV
Sbjct: 300  SEHVSKRTRPMGISDEVNLGVNMLPMS------FSGQAHGHSPAFKAP-----DDLPKTV 348

Query: 327  AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML 386
            A+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  + FKVWD+  CSM 
Sbjct: 349  ARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMP 407

Query: 387  FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
             + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND
Sbjct: 408  LQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVND 467

Query: 447  LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
            ++FS P KQ+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS +
Sbjct: 468  ISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTA 527

Query: 507  VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566
            +DGKIKAWLYD++G+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA
Sbjct: 528  LDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGA 587

Query: 567  IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
            +KRTYQG   +  S+ VV FDT K++ LAAGDD  IK WDM+ VQLLT ID  GGL  +P
Sbjct: 588  VKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASP 645

Query: 627  RICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPI-----STVTG 680
            RI FNK G+LLAV  NEN IKI+   +    +     +S    K ++N I     +  T 
Sbjct: 646  RIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATS 705

Query: 681  AGIANGSVSV------NEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSK 731
            AG A+ S +V      N D +   DVKP I+ E+ +KS++ K    + PS+C+SL LP  
Sbjct: 706  AGHADRSANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPEN 765

Query: 732  VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 791
            ++  KISRL + N G AI ALASN +HL+W+W RN+   + +AT  +PP+ +QP  G   
Sbjct: 766  LRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASG-IL 824

Query: 792  MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF 851
            M ND  ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF
Sbjct: 825  MTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 884

Query: 852  NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 911
            +P DNN+IAIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ 
Sbjct: 885  HPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLC 944

Query: 912  VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK 971
            VW+ DGW  Q  + L  P G    APS+T +QFH+DQ  FL+VHET LAIYE  +L C+K
Sbjct: 945  VWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMK 1004

Query: 972  QWFPISSV-PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1030
            QW    S+ PI+ ATFSCD ++V+ SF+D T+ +  ++NL ++CR+  +AYL  + S  +
Sbjct: 1005 QWAVRESLAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSN 1064

Query: 1031 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE--IVGDQPTSTSEGDR 1088
            V+P  IAAHP +P  FAVGL++G V++ EP E    W V PP E       PT+ S G  
Sbjct: 1065 VHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGAS 1124

Query: 1089 AMD 1091
            A D
Sbjct: 1125 ASD 1127

Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2

 Score = 1076 bits (2782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/1159 (49%), Positives = 747/1159 (64%), Gaps = 98/1159 (8%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F ++ H LE+ES F+F+M++FED +  G+W+DVE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD  D AKA++IL K+LK F+  NEELFKE+  LLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L + R++E LSKY GD  SAR  M+ ELK++IEANP+ + KL+FPS+K  RLR LINQSL
Sbjct: 121  LTNFRENEQLSKY-GDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   +    PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPF 239

Query: 225  QTTQSPSSWNFSSSMLTDSA----VSFVALSLSDPTNKAVTM---DRPE----------- 266
            Q T +P + + +  M   S     VS   + L  P N AV+M   +RP            
Sbjct: 240  QPTPAPLTTSLAGWMPNPSVQHPTVSAGPIGLGAP-NSAVSMLKRERPRSPPTNSLSMDY 298

Query: 267  ---DSD-ILSEKSPVRI------LNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
               DS+ +L    P  I      L      VTYPG                    QS   
Sbjct: 299  QTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPG--------------------QSHAH 338

Query: 317  TSFS--DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN 374
             ++S  D PK V++ L +GS+   SMDFHPVQ T+LLVGTN+GD  +W+V S +KL  R+
Sbjct: 339  ATYSTDDLPKNVSRILSQGSAI-KSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRS 397

Query: 375  FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
            FKVWD+  C++  + +L  +   +VNRVVWSPDG LLGVAYSKHIV +Y+YHGG D R  
Sbjct: 398  FKVWDLATCTVNLQASLASEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNH 457

Query: 435  LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
            LEIDAH GNVNDLAFS P +Q+ V+TCG+DKTIKVWDAVTG++ ++FEGH APVYS+CPH
Sbjct: 458  LEIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPH 517

Query: 495  AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554
             KENI FIFS +VDGKIKAWLYD++G+RVDYDAPG  CT MAY A+G RLFSCGTSKEGE
Sbjct: 518  QKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGE 577

Query: 555  SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614
            SF+VEWNESEGA+KRTY GL  +  SV VV FDT K++ L AGD+  +K WDM+ V LL+
Sbjct: 578  SFIVEWNESEGAVKRTYLGLGKR--SVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLS 635

Query: 615  TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKL 670
            +  A GGLP +P +  NK GTLLAV   +N IKIL   E     +S+   G+ S      
Sbjct: 636  STAAEGGLPSSPCLRINKEGTLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPG 695

Query: 671  SV--NPI-------STVTGAGIANGSVS--------VNEDPKE--DVKPEISVEAENKSE 711
            SV   PI       ++ TG  ++ G  S        +N D +   DVKP I+ +AE    
Sbjct: 696  SVAKGPIVGTFGTPNSSTGMSLSMGERSGPVASVTGLNGDNRSLPDVKPRIADDAEKSKT 755

Query: 712  VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 771
             +    +  S+ ++L LP  +   ++ +L Y N G AI ALA N  H +W+W +++  L 
Sbjct: 756  WKLTEISERSQLRTLRLPDTLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLL 815

Query: 772  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM 831
             +A + VPP+L+QP  G   M NDT + N ++ VPCFALSKND+Y+ SASGG ISL+ +M
Sbjct: 816  GKANSNVPPQLWQPSSG-VLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMM 874

Query: 832  TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891
            TFKT+ T M P P ATSLAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH KRVTG
Sbjct: 875  TFKTMTTFMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTG 934

Query: 892  LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951
            L FS+ LN+LVSSG D+Q+ VW +DGW  Q  + +Q P G      + T +QFH+DQ   
Sbjct: 935  LAFSNVLNVLVSSGADSQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHV 994

Query: 952  LLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010
            L+VH + LAIYEA +L  +KQW P  SS  ++ A +SCD + ++ +F DG++SI  A+ L
Sbjct: 995  LVVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSCDSQSIYAAFDDGSVSILTATTL 1054

Query: 1011 EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV- 1069
            +++CRI   +YL P+     VYP  +AAHP +P QFAVGLT+G V+VIEP  P   W + 
Sbjct: 1055 QLKCRIGPNSYL-PSNPSSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGIS 1113

Query: 1070 LPPDEIVGDQPTSTSEGDR 1088
             PP+   G   +S    D+
Sbjct: 1114 APPENGAGPSVSSAPGSDQ 1132

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2

 Score = 1005 bits (2599), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/1120 (46%), Positives = 724/1120 (64%), Gaps = 72/1120 (6%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F ES H LE+ES F+F++K+FE+  L G+W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD +D AKA+ IL KDLK FA  NEEL+KE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSK YGD  SAR  M  ELK++IEANP+ + KL FPS K  RLR LINQSL
Sbjct: 121  LENFRENEQLSK-YGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 233
            NWQH  C NP+PNPDI TLF+DH C         ++     LP      PS++       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFLDHSCSPSN---GARALTPVNLPVAAVARPSNFVPLGVHG 236

Query: 234  -NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGV 292
              F S+       + +A  +++P   +        S +++  SP  +   Q + + +P  
Sbjct: 237  GPFQSNPAPAPNANALAGWMANPNPSSSV-----PSGVVA-ASPFPMQPSQVNELKHPRA 290

Query: 293  SLKNIPDYSPKSSLKKEMFQ----------------SFGETSFSDFPKTVAQTLIEGSSS 336
               ++     +S+  +++ +                S    S  D P+ V  T+ +GS  
Sbjct: 291  PSNSLGLMDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVV 350

Query: 337  PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396
             +SMDFHP  HTLL VG + G+  LW+V S +K+    FK+W++ ACS++F+ ++V++P 
Sbjct: 351  -ISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPS 409

Query: 397  VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQI 456
            +SV RV WSPDG+LLGV+++KH++ +YAY  GSD RQ LEIDAHVG VNDLAF+ P KQ+
Sbjct: 410  ISVTRVAWSPDGNLLGVSFTKHLIHVYAYQ-GSDLRQHLEIDAHVGCVNDLAFAHPNKQM 468

Query: 457  SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY 516
             V+TCGDDK IKVWD ++G + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWLY
Sbjct: 469  CVVTCGDDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLY 527

Query: 517  DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
            D++G+RVDYDAPG  CT M YSA+G RLFSCGTSKEG+SFLVEWNESEGA+KRTY G   
Sbjct: 528  DNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLG--F 585

Query: 577  QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636
            +  S  VV FDT +++ LA G+D+ IK W+M+   LLT ++A GGLP  PR+ FNK+G L
Sbjct: 586  RKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNL 645

Query: 637  LAV---------IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687
            LAV         +AN + ++ L   E+ S +A+    D   K+S + +++     I    
Sbjct: 646  LAVTTADNGFKILANTDGLRTLRAFEARSFEASKASID--MKVSTSAMASSISPAIGKIE 703

Query: 688  VSVNEDPKEDVKPEISVEAENKS----------EVEKPL----FARPSECQSLLLP-SKV 732
                  P         +EA +++          +  KPL       P++C+ + +P SK 
Sbjct: 704  HMDAGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKD 763

Query: 733  KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 792
              +K++RL Y N G  + AL SNGV  +W+W RN+   + +AT  V P+ +QP  G   M
Sbjct: 764  SVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSG-LLM 822

Query: 793  VNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 852
             ND  + N + +VPC ALSKND+Y+ SA GG +SL+ +MTFK + T MPP P +T LAF+
Sbjct: 823  ANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFH 881

Query: 853  PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV 912
            P DNN+IAIGM+DS+I IYN R  EV +KL+GH K +TGL FS ALNILVSSG DAQ+F 
Sbjct: 882  PQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFF 941

Query: 913  WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ 972
            W  D W  +   ++Q P G   +   +T +QFH DQ + L+ HET LAIY+A ++ C+ +
Sbjct: 942  WTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMECIHK 999

Query: 973  WFPISSV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL-RPTTSCL 1029
            W P  ++  PI+ A++SC+ ++V+ SF DG +++ +A +L ++CRI  +AY+ +PT +  
Sbjct: 1000 WVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSA 1059

Query: 1030 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV 1069
             ++P  I AHP +P Q AVGL++G V VIEP+E    W V
Sbjct: 1060 PIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1

 Score = 1001 bits (2589), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1129 (46%), Positives = 711/1129 (62%), Gaps = 75/1129 (6%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL EE F ES H LE+ES F+F+ K+F++ +L G+W+DVE YLS F
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD  + AKA+ IL +DL+ F+  NEEL+KE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L + R++E LSKY GD  +AR  M+ ELK++IEANP+ + KL FP+++  RLR LINQSL
Sbjct: 121  LQNFRENEQLSKY-GDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 233
            NWQH  C NP+PNPDI TLF DH C L     +  +      P  T   P+++       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQ---PVTTLTKPAAYPSLGPHV 236

Query: 234  ------------NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILN 281
                          +S M   S  S V  ++  P      M +P++         + IL 
Sbjct: 237  PFPPGPAAANAGALASWMAAASGASAVQAAVVTP----ALMPQPQNQ--------MSILK 284

Query: 282  EQASTVTYPGVSLKNIPDYS------PKSSLKKEMFQSFGET---SFSDFPKTVAQTLIE 332
               +    PG+     PD+       P  S+++  + +  +    S  D P   A  L +
Sbjct: 285  RPRTPPATPGIVDYQNPDHELMKRLRPAPSVEEVTYPAPRQQAPWSLEDLPTKAALALHQ 344

Query: 333  GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 392
            GS+   SM+F+P+Q+TLLLVG+  G+  LW++ + ++L  R FK+WD+  CS  F+  + 
Sbjct: 345  GSTV-TSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIA 403

Query: 393  RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 452
            ++  +SV RV WSPDG+ +GVA++KH++QLYA+ G +D RQ  EIDAHVG VNDLAF+ P
Sbjct: 404  KETPISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANP 463

Query: 453  CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK 512
             +Q+ VITCGDDK IKVWD V+G + ++FEGH APVYS+CPH KENI FIFS ++DGKIK
Sbjct: 464  NRQLCVITCGDDKLIKVWD-VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIK 522

Query: 513  AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572
            AWLYD+LG+RVDYDAPG  CTRM YSA+G RLFSCGTSK+G+SFLVEWNESEG+IKRTY+
Sbjct: 523  AWLYDNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYK 582

Query: 573  GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632
              + Q     VV FDT+K+  LA G+D  IK WDMN + +LT+ DA GGLP  P + FNK
Sbjct: 583  --EFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNK 640

Query: 633  NGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691
            +G LLAV   +N  KIL  P    S+ A    +    +  V+    V GA +A+ +  V 
Sbjct: 641  DGNLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVD-FKAVPGAPVASVNCKVE 699

Query: 692  E-------------DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV-KANKI 737
                          DP    K  I    +     +      PS+C    LP     + K+
Sbjct: 700  RGSPVRHSQMLNGVDPS---KSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKV 756

Query: 738  SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797
             +L Y N G  I AL SNG+  +W+W  N+   S +AT  V P+ +QP  G   M ND +
Sbjct: 757  VQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSG-LLMTNDVS 815

Query: 798  DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 857
              N + A PC ALSKND+Y+ SA+GG +SL+ +MTFK + T MPP P +T LAF+P DNN
Sbjct: 816  GVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNN 875

Query: 858  VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917
            VIAIGM+DSTI IYN R  EV SKL+GH KR+TGL FS ALNILVSSG DAQI  W +D 
Sbjct: 876  VIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDT 935

Query: 918  WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS 977
            W  +   ++Q P G    A  +T +QFH DQ R L+VHET LA+++A ++ C++QW P  
Sbjct: 936  WEKRKSVAIQMPAG--KAANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQD 993

Query: 978  SV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035
            S+  PIS A ++C+ ++++T+F DG + + +A +L ++CRI  +AYL      L   P  
Sbjct: 994  SLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQGNQGLS--PLV 1051

Query: 1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTS 1084
            +AAHP  P QFAVGL +G V ++EP E    W ++PP E + + P++TS
Sbjct: 1052 VAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAI-NSPSTTS 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 146/331 (44%), Gaps = 44/331 (13%)

Query: 325  TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI--GA 382
            T  QTL    SS +S+ F P       V +  GD              +  K+WD   G 
Sbjct: 958  TCTQTLEGHGSSVLSVAFSPDGQR---VASGSGD--------------KTIKIWDTASGT 1000

Query: 383  CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG 442
            C     T  +   G SV  V +SPDG  +        ++++    G+   Q LE   H G
Sbjct: 1001 C-----TQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGT-CTQTLE--GHGG 1052

Query: 443  NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIH 500
             V  + FS   ++++  +  DD TIK+WDAV+G+ T + EGHG  V+S+   P  +    
Sbjct: 1053 WVQSVVFSPDGQRVA--SGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQR--- 1107

Query: 501  FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
             + S S+DG IK W   S       +  G     +A+S +G+R+     S   +  +  W
Sbjct: 1108 -VASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRV----ASGSIDGTIKIW 1162

Query: 561  NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620
            + + G   +T +G       V  V F     ++ +   D  IKIWD        T++  G
Sbjct: 1163 DAASGTCTQTLEG---HGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHG 1219

Query: 621  GLPENPRICFNKNGTLLAVIANENRIKILET 651
            G  ++  + F+ +G  +A  +++N IKI +T
Sbjct: 1220 GWVQS--VAFSPDGQRVASGSSDNTIKIWDT 1248

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 138/626 (22%), Positives = 244/626 (38%), Gaps = 88/626 (14%)

Query: 349  LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408
            +L  G++     LWD++SGQ              C   FK    R     V  VV+SP+ 
Sbjct: 920  MLASGSDDQTVRLWDISSGQ--------------CLKTFKGHTSR-----VRSVVFSPNS 960

Query: 409  SLLGVAYSKHIVQLYAYHGGSDARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI 467
             +L    S   V+L+    G    + L I   H G V  +AF+     ++  T   D+T+
Sbjct: 961  LMLASGSSDQTVRLWDISSG----ECLYIFQGHTGWVYSVAFNLDGSMLA--TGSGDQTV 1014

Query: 468  KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527
            ++WD  +    Y F+GH + V S+   +   +  + S S D  ++ W  D       Y  
Sbjct: 1015 RLWDISSSQCFYIFQGHTSCVRSVVFSSDGAM--LASGSDDQTVRLW--DISSGNCLYTL 1070

Query: 528  PG-LGCTR-MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585
             G   C R + +S +G  L S G     +  +  W+ S G    T QG     + V  + 
Sbjct: 1071 QGHTSCVRSVVFSPDGAMLASGGD----DQIVRLWDISSGNCLYTLQGYT---SWVRFLV 1123

Query: 586  FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645
            F      +     D ++++WD++  + L T+   G       + F+ +G  LA  + +  
Sbjct: 1124 FSPNGVTLANGSSDQIVRLWDISSKKCLYTLQ--GHTNWVNAVAFSPDGATLASGSGDQT 1181

Query: 646  IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV------- 698
            +++ +   S  +      +  +  +  NP  +   +G ++ +V + E             
Sbjct: 1182 VRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGH 1241

Query: 699  ---------KPEISVEAENKSEVEKPLF-ARPSECQSLLLPSKVKANKISRLTYNNGGQA 748
                      P+ S+ A   S+    L+    S+C   L   +   N ++ + +N  G  
Sbjct: 1242 TSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKC---LHTFQGHTNWVNSVAFNPDGSM 1298

Query: 749  IFALASNGVHLMWR---------------WPRN-----DLTLSTEATTKVPPRLYQPRHG 788
            + + + +    +W                W  +     D T+    +     RL+    G
Sbjct: 1299 LASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSG 1358

Query: 789  PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTAT 847
                    T       V     S + A L S SG   + L+ + + K + T+   +    
Sbjct: 1359 ECLY----TFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVG 1414

Query: 848  SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 907
            S+ F+P D  ++A G DD T+ ++N  S E +  L GH   V  + FS    IL S   D
Sbjct: 1415 SIVFSP-DGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDD 1473

Query: 908  AQIFVWDVD-GWGIQTCRSLQTPDGV 932
              I +WDV  G  I+T +S +  +G+
Sbjct: 1474 ETIKLWDVKTGECIKTLKSEKIYEGM 1499

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 120/545 (22%), Positives = 224/545 (41%), Gaps = 35/545 (6%)

Query: 374  NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 433
            + +VW++ +  +L    + R     V  VV+SPDG +L    +   V+L++   G   + 
Sbjct: 665  HVRVWEVKSGKLLL---ICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIK- 720

Query: 434  QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
               +  H   V  +AF    + ++  +   DKTIK+WD   G+   +  GH   V   C 
Sbjct: 721  --TLTGHEHEVFSVAFHPDGETLA--SASGDKTIKLWDIQDGTCLQTLTGHTDWVR--CV 774

Query: 494  HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-MAYSANGRRLFSCGTSKE 552
                + + + S + D  IK W   S G  +       G  R +A+SA+G+ L     S  
Sbjct: 775  AFSPDGNTLASSAADHTIKLWDV-SQGKCLRTLKSHTGWVRSVAFSADGQTL----ASGS 829

Query: 553  GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612
            G+  +  WN   G   +TY G     NSV  + +      +++   D  IK+WD      
Sbjct: 830  GDRTIKIWNYHTGECLKTYIG---HTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHIC 886

Query: 613  LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672
            + T+   G   E   + F+ +G  LA ++ +  +++        + A    +D    ++ 
Sbjct: 887  IKTLH--GHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAF 944

Query: 673  NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 732
            +P   +  +G  + +V + +         IS    +   +    F+  S  Q+L   S  
Sbjct: 945  SPDRQILASGSNDKTVKLWD---WQTGKYISSLEGHTDFIYGIAFSPDS--QTLASASTD 999

Query: 733  KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 792
             + ++  ++     Q I    ++ V+ +   P+  +  +  A   V  +L+    G    
Sbjct: 1000 SSVRLWNISTGQCFQ-ILLEHTDWVYAVVFHPQGKIIATGSADCTV--KLWNISTGQCL- 1055

Query: 793  VNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTATSLAF 851
                T S   + +   A S +   L SAS    + L+   T + +  +   S    S  F
Sbjct: 1056 ---KTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIF 1112

Query: 852  NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 911
            +P +  +IA    D T+ I++ +  + +  L GH+  V  + FS    IL S+  D  + 
Sbjct: 1113 SP-NGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVR 1171

Query: 912  VWDVD 916
            +WDV+
Sbjct: 1172 IWDVN 1176

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 142/630 (22%), Positives = 254/630 (40%), Gaps = 128/630 (20%)

Query: 398  SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
            +V  V +SPDG  +    S   ++L+    G+  +    I  H   VN++ FS   K ++
Sbjct: 1115 AVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLK---TITGHEQTVNNVYFSPDGKNLA 1171

Query: 458  VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAW- 514
              +   D +IK+WD  +G    +  GH A V ++   P  +     I + S D  +K W 
Sbjct: 1172 --SASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQT----IAAGSEDKTVKLWH 1225

Query: 515  -----LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569
                 L  +L    D+         +++S +G+ L S    K     +  W  ++G + +
Sbjct: 1226 RQDGKLLKTLNGHQDW------VNSLSFSPDGKTLASASADKT----IKLWRIADGKLVK 1275

Query: 570  TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629
            T +G    ++SV  V+F +    I +A  D+ IK+W+ + ++L T     GG+     + 
Sbjct: 1276 TLKG---HNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA---VN 1329

Query: 630  FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI---STVTGAGIANG 686
            F  +  ++A  + +N I++ + P  + ++   VL+ N    +V+ +   S +  AG A+G
Sbjct: 1330 FLPDSNIIASASLDNTIRLWQRPLISPLE---VLAGNSGVYAVSFLHDGSIIATAG-ADG 1385

Query: 687  SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL--LPSKVKANKISRLTYNN 744
            ++ +                              S+  SLL  LP               
Sbjct: 1386 NIQLWH----------------------------SQDGSLLKTLP--------------- 1402

Query: 745  GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 804
            G +AI+ ++          P+ DL  S  A   V  ++++ R G         D+     
Sbjct: 1403 GNKAIYGISFT--------PQGDLIASANADKTV--KIWRVRDGKALKTLIGHDNE---- 1448

Query: 805  VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 863
            V     S +   L SAS    + L+ V   K   T+   +     ++F+P D  +IA   
Sbjct: 1449 VNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSP-DGKIIASAS 1507

Query: 864  DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV-DGWGIQT 922
             D TI ++++ S  +I  L  H+  V  + F+   ++L S+  D  + +W   DG  + T
Sbjct: 1508 ADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSHDGHLLHT 1567

Query: 923  --------CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF 974
                      S  +PDG    + SE       D+T  +   + HL       LT L    
Sbjct: 1568 FSGHSNVVYSSSFSPDGRYIASASE-------DKTVKIWQIDGHL-------LTTL---- 1609

Query: 975  PISSVPISQATFSCDCRMVFTSFVDGTLSI 1004
            P     +  A FS D + + +  +D T  I
Sbjct: 1610 PQHQAGVMSAIFSPDGKTLISGSLDTTTKI 1639

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 22/275 (8%)

Query: 375 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
             VWD+ +   L       D    V  V +SPDG+LL        V+L+     + A ++
Sbjct: 483 IHVWDVASGDELHTLEGHTD---WVRAVAFSPDGALLASGSDDATVRLWDV---AAAEER 536

Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
              + H   V D+AFS      S++  G  D T ++W+  TG+     +GH   VY++  
Sbjct: 537 AVFEGHTHYVLDIAFS---PDGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVA- 592

Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
               +   + S S DG I+ W   +   R    AP      +A+S +G  L         
Sbjct: 593 -FSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHG-----S 646

Query: 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613
           +S +  W+ + G    T++G     + V  V F      + +  DD  I++WD+   +  
Sbjct: 647 DSTVHLWDVASGEALHTFEG---HTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEH 703

Query: 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
           TT++ G   P +  + F+  GT LA  + +  I+I
Sbjct: 704 TTLE-GHTEPVH-SVAFHPEGTTLASASEDGTIRI 736

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1092
224141931	1109	predicted protein [Populus trichocarpa]	0.975	0.960	0.585	0.0
356550630	1132	PREDICTED: topless-related protein 1-lik	0.958	0.924	0.556	0.0
357455301	1134	WD repeat-containing protein, putative [	0.959	0.924	0.550	0.0
357455305	1149	WD repeat-containing protein, putative [	0.959	0.912	0.550	0.0
357455303	1112	WD repeat-containing protein, putative [	0.959	0.942	0.555	0.0
356526242	1133	PREDICTED: protein TOPLESS-like [Glycine	0.957	0.923	0.551	0.0
357458875	1138	WD repeat-containing protein, putative [	0.960	0.921	0.552	0.0
356554802	1136	PREDICTED: topless-related protein 1-lik	0.969	0.932	0.550	0.0
24461849	1127	CTV.2 [Citrus trifoliata]	0.955	0.925	0.552	0.0
297839887	1120	hypothetical protein ARALYDRAFT_895943 [	0.956	0.933	0.547	0.0

>gi|224141931|ref|XP_002324314.1| predicted protein [Populus trichocarpa] gi|222865748|gb|EEF02879.1| predicted protein [Populus trichocarpa]

 Score = 1218 bits (3151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1103 (58%), Positives = 784/1103 (71%), Gaps = 38/1103 (3%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            M+ L KDLV LI QFL+EEGF E+A MLERES +YF MKFFEDMI  G W++ E+YLS F
Sbjct: 1    MAALCKDLVLLISQFLDEEGFKETARMLERESGYYFSMKFFEDMIRSGNWDEAERYLSCF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TK+DDNRYSTKIYFEIRKQ F E LD  + +KAL+IL KDLK FAP NEEL KE+  LLT
Sbjct: 61   TKLDDNRYSTKIYFEIRKQKFLEVLDNDERSKALDILMKDLKAFAPDNEELLKEMTLLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++IRDHE LS  Y DA SARK MM+ELK++IEANP+L+ KL+FP+I   RLRRLINQSL
Sbjct: 121  LNNIRDHESLS-MYSDAESARKVMMVELKKVIEANPLLRDKLEFPNIANHRLRRLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQETD---FSGQSSESNALPPQTTQ----SPSSW 233
            NWQH+HCA PQPNPDI TLFVDH+C    +D   FS  +S+SN LP QTT     + S+ 
Sbjct: 180  NWQHMHCAYPQPNPDIRTLFVDHICVPIPSDDHLFSA-ASDSNPLPSQTTSMLVSTSSAS 238

Query: 234  NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILS-------EKSPVRILNEQAST 286
            N +SS    S++S  ALSL  PTN    +   E   +LS         + + +L E  +T
Sbjct: 239  NSTSSSEAHSSISSEALSLGVPTNIGSFIVVIEKKLLLSLTIYSMFVAAMIEVL-EDNTT 297

Query: 287  VTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS-----DFPKTVAQTLIEGSSSPMSMD 341
            V   G+    I +    S+    +F  F     S     D PK V + L EGSS P SMD
Sbjct: 298  VNDSGIPKNRIVNLKRPSNEASLIFHFFLLKHCSVNISDDLPKNVFRILNEGSS-PTSMD 356

Query: 342  FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401
            FHP + T+LLVGT VGD GLW+V+SG+ L  RNFKVWDI ACSM+FK  L++DP VSVNR
Sbjct: 357  FHPEKQTVLLVGTTVGDIGLWEVSSGESLLSRNFKVWDIAACSMMFKATLLKDPSVSVNR 416

Query: 402  VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 461
            V WSP+G L GVAYSKH+VQ+Y+Y+   DARQQLEIDAHVG VNDL FSAP KQ+ VITC
Sbjct: 417  VAWSPEGGLFGVAYSKHLVQIYSYNEAKDARQQLEIDAHVGGVNDLTFSAPEKQLLVITC 476

Query: 462  GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 521
            GDDK +K WDA  G + Y+FEGH APVYSLCP++K N+HF+F+ SV+G IK WLYD+LGA
Sbjct: 477  GDDKIVKAWDATDGVKMYTFEGHDAPVYSLCPYSKGNVHFVFATSVNGNIKVWLYDNLGA 536

Query: 522  RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 581
            RVDYDAPGLGCT MAYS + RRLFSCGTS  GESFLVEW++SEGAIKRTY G  LQ NS 
Sbjct: 537  RVDYDAPGLGCTSMAYSGD-RRLFSCGTSGSGESFLVEWDDSEGAIKRTYLG--LQKNSS 593

Query: 582  SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641
            SVV FD  K+Q+LAAGD+HVIKIWDMNK++L TTIDA GGLP NP + FNK GTLLAV A
Sbjct: 594  SVVQFDIMKNQVLAAGDEHVIKIWDMNKIELFTTIDAEGGLPANPCVRFNKEGTLLAVSA 653

Query: 642  NENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS------VNED 693
            N+N+IKIL    S  +       L D+ R +S   IS    A  A+ +V+      +   
Sbjct: 654  NDNKIKILAKDGSLQSLHTTENCLDDDFRLVS-EAISKGACAQDADEAVAKQCFNLLQNG 712

Query: 694  PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 753
              + VK +I+ +              PS+CQ L LPS +KANKISRL YNN G +I AL 
Sbjct: 713  NLKAVKSKITGKDTKSKSGRLIELNSPSQCQILRLPSHMKANKISRLIYNNAGNSILALT 772

Query: 754  SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 813
            SN  HL W+WP+ND  LS  A  KV P+L+QPR     M ND T SN +E VPCFALS+N
Sbjct: 773  SNATHLYWKWPQNDFDLSDTAAAKVSPQLWQPRSYSGLMTNDLTGSNPEETVPCFALSRN 832

Query: 814  DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 873
            D+YL S+SGG ISLY ++ FKT+L+IM P P AT +AF+P DNN++AIG D+STILIYN 
Sbjct: 833  DSYLMSSSGGRISLYNLLKFKTMLSIMQPPPAATCIAFHPQDNNILAIGRDNSTILIYNV 892

Query: 874  RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 933
            RS++VI+ LEGHSKRV+GL FS+ LN+LVSSG DAQIFVW+V+GW  Q    LQ PDG +
Sbjct: 893  RSAKVITILEGHSKRVSGLAFSNDLNLLVSSGADAQIFVWNVEGWYKQRSTFLQIPDGRI 952

Query: 934  TLAPS-ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCR 991
              + S +THIQFH++QT FL VHETHLAIYEA +L C+KQW P   + PIS ATFSCD +
Sbjct: 953  PFSLSTDTHIQFHQNQTEFLSVHETHLAIYEARKLECVKQWIPGDFATPISHATFSCDGQ 1012

Query: 992  MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1051
            MV+ SF+DG +SI +AS+ ++ C+I  TAYL PT+S L VYP AIAAHP +P QFAVGLT
Sbjct: 1013 MVYASFLDGLVSIFDASDFQLYCQINPTAYLFPTSS-LGVYPIAIAAHPQEPNQFAVGLT 1071

Query: 1052 NGEVYVIEPNEPGDTWAVLPPDE 1074
            +G V V EP      W++L  DE
Sbjct: 1072 DGGVIVFEPPISAGKWSMLTADE 1094

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550630|ref|XP_003543688.1| PREDICTED: topless-related protein 1-like [Glycine max]

 Score = 1216 bits (3147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/1138 (55%), Positives = 787/1138 (69%), Gaps = 91/1138 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
            Q T +P     + W  + + +   AVS  A+ L  P+  A            ++D P  D
Sbjct: 240  QPTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGD 299

Query: 268  SDILSEKS-PVRILNE-----QASTVTYPGVSLK---NIPDYSPKSSLKKEMFQSFGETS 318
            SD +S+++ P+ + +E        + T+PG       N PD                   
Sbjct: 300  SDHVSKRTRPIGMSDEVNLPVNVLSATFPGHGHGQAFNAPD------------------- 340

Query: 319  FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW 378
              D PKT  ++L +GSS PMSMDFHPVQ TLLLVGTNVGD  LW+V S ++L +RNFKVW
Sbjct: 341  --DLPKTAMRSLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVW 397

Query: 379  DIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID 438
            D+ ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG D  Q LEID
Sbjct: 398  DLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVGQHLEID 457

Query: 439  AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 498
            AHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KEN
Sbjct: 458  AHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSICPHYKEN 517

Query: 499  IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558
            I FIFS ++DGKIKAWLYD+LG+RVDY+APG  CT MAYSA+G RLFSCGTSKEGES +V
Sbjct: 518  IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIV 577

Query: 559  EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618
            EWNESEGA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT+DA
Sbjct: 578  EWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDA 635

Query: 619  GGGLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKL 670
             GGLP +PRI FNK+G LLAV ANEN IKIL   +         NS+      S+ + K 
Sbjct: 636  DGGLPASPRIRFNKDGALLAVSANENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKP 695

Query: 671  SVNPISTVTG----------AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLF 717
            ++NPIS              A       ++N D +   DVKP IS E+ +KS++ K    
Sbjct: 696  TINPISAAAAAATSAALAERASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEI 755

Query: 718  ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 777
              PS+C+SL LP  V+ NKISRL Y N G AI ALASN +HL+W+W RND   + +AT  
Sbjct: 756  NEPSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTGKATAS 815

Query: 778  VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL 837
            V P+L+QP  G   M ND TD+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ 
Sbjct: 816  VQPQLWQPSSG-ILMTNDITDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT 874

Query: 838  TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 897
            T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS  
Sbjct: 875  TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHV 934

Query: 898  LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 957
            LN+LVSSG DAQI VW+ DGW  Q  R LQ P G    A ++T +QFH+DQ RFL+VHET
Sbjct: 935  LNVLVSSGADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHET 994

Query: 958  HLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016
             LAIYEA +L CLKQWFP  SS PIS ATFSCD ++++ SF+D T+ +   SNL ++CRI
Sbjct: 995  QLAIYEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVLSVSNLRLRCRI 1054

Query: 1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
              +AYL  + S  +V P  IAAHP +P QFAVGL++G V+V EP+E    W V PP E
Sbjct: 1055 NPSAYLSASVSS-NVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPHESEGKWGVPPPIE 1111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455301|ref|XP_003597931.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486979|gb|AES68182.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1199 bits (3103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1139 (55%), Positives = 780/1139 (68%), Gaps = 91/1139 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSK YGD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   +    PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 239

Query: 225  QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKAVTMD 263
            Q T +P     +  M   + V+  ++S                      + PTN +V  D
Sbjct: 240  QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--D 297

Query: 264  RPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
             P  DSD +S+++ P+ + +E        + T+PG                    Q+F  
Sbjct: 298  YPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF-- 339

Query: 317  TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 376
             S  D PKTV +TL +G SSPMSMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFK
Sbjct: 340  NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFK 398

Query: 377  VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 436
            VWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LE
Sbjct: 399  VWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLE 458

Query: 437  IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
            IDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH K
Sbjct: 459  IDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYK 518

Query: 497  ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556
            ENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES 
Sbjct: 519  ENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESS 578

Query: 557  LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616
            +VEWNESEGA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT+
Sbjct: 579  IVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTV 636

Query: 617  DAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNL 667
            DA GGLP +PRI FNK G+LLAV ANEN IKI         L + E++S DA+   S+ +
Sbjct: 637  DADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAM 695

Query: 668  RKLSVNPI--------STVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 716
             K  +NP+        + +  A        +N D +   D+KP IS E+ +KS++ K   
Sbjct: 696  TKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTE 755

Query: 717  FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776
               PS C+SL LP   +  KISRL Y N G AI ALASN +HL+W+W RND   S +AT 
Sbjct: 756  INEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATA 815

Query: 777  KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 836
             VPP+L+QP  G   M ND  D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 816  SVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 874

Query: 837  LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 896
             T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS 
Sbjct: 875  TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 934

Query: 897  ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
             LN+LVSSG D QIFVW+ DGW  Q  R LQ P G    A ++T +QFH+DQ RFL+VHE
Sbjct: 935  VLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHE 994

Query: 957  THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015
            T LAIYEA +L CLKQWFP  ++ PIS ATFSCD  ++F SF+D T+ +  ASNL ++CR
Sbjct: 995  TQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCR 1054

Query: 1016 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
            I  +AYL    S  ++ P  IAAHP +P QFAVGL++G V+V EP E    W V PP E
Sbjct: 1055 INPSAYLSANVSSSNIQPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1113

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455305|ref|XP_003597933.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486981|gb|AES68184.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1199 bits (3102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1139 (55%), Positives = 780/1139 (68%), Gaps = 91/1139 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 16   MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 75

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+  NEELFKE+ QLLT
Sbjct: 76   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 135

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSK YGD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 136  LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 194

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   +    PP       
Sbjct: 195  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 254

Query: 225  QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKAVTMD 263
            Q T +P     +  M   + V+  ++S                      + PTN +V  D
Sbjct: 255  QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--D 312

Query: 264  RPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
             P  DSD +S+++ P+ + +E        + T+PG                    Q+F  
Sbjct: 313  YPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF-- 354

Query: 317  TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 376
             S  D PKTV +TL +G SSPMSMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFK
Sbjct: 355  NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFK 413

Query: 377  VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 436
            VWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LE
Sbjct: 414  VWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLE 473

Query: 437  IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
            IDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH K
Sbjct: 474  IDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYK 533

Query: 497  ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556
            ENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES 
Sbjct: 534  ENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESS 593

Query: 557  LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616
            +VEWNESEGA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT+
Sbjct: 594  IVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTV 651

Query: 617  DAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNL 667
            DA GGLP +PRI FNK G+LLAV ANEN IKI         L + E++S DA+   S+ +
Sbjct: 652  DADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAM 710

Query: 668  RKLSVNPI--------STVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 716
             K  +NP+        + +  A        +N D +   D+KP IS E+ +KS++ K   
Sbjct: 711  TKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTE 770

Query: 717  FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776
               PS C+SL LP   +  KISRL Y N G AI ALASN +HL+W+W RND   S +AT 
Sbjct: 771  INEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATA 830

Query: 777  KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 836
             VPP+L+QP  G   M ND  D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 831  SVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 889

Query: 837  LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 896
             T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS 
Sbjct: 890  TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 949

Query: 897  ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
             LN+LVSSG D QIFVW+ DGW  Q  R LQ P G    A ++T +QFH+DQ RFL+VHE
Sbjct: 950  VLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHE 1009

Query: 957  THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015
            T LAIYEA +L CLKQWFP  ++ PIS ATFSCD  ++F SF+D T+ +  ASNL ++CR
Sbjct: 1010 TQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCR 1069

Query: 1016 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
            I  +AYL    S  ++ P  IAAHP +P QFAVGL++G V+V EP E    W V PP E
Sbjct: 1070 INPSAYLSANVSSSNIQPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1128

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455303|ref|XP_003597932.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486980|gb|AES68183.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1199 bits (3102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/1117 (55%), Positives = 773/1117 (69%), Gaps = 69/1117 (6%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSK YGD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   +    PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 239

Query: 225  QTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKS-PVRILNE- 282
            Q T +P     +  M   + V+    S+S      + +  P   D +S+++ P+ + +E 
Sbjct: 240  QPTPAPVPMPLAGWMSNPTPVAHP--SVSGGGAIGLGVGGPSMPDHISKRTRPIGMSDEG 297

Query: 283  ----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPM 338
                   + T+PG                    Q+F   S  D PKTV +TL +G SSPM
Sbjct: 298  NLPVNVLSATFPG----------------HGHGQAF--NSPDDLPKTVLRTLNQG-SSPM 338

Query: 339  SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398
            SMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFKVWD+ ACSM F+ ALV+DP VS
Sbjct: 339  SMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFKVWDLSACSMPFQAALVKDPAVS 398

Query: 399  VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 458
            VNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG VNDLAFS P KQ+ V
Sbjct: 399  VNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCV 458

Query: 459  ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518
            ITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+
Sbjct: 459  ITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDN 518

Query: 519  LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
            LG+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES +VEWNESEGA+KRTYQG + + 
Sbjct: 519  LGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKR- 577

Query: 579  NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
             S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT+DA GGLP +PRI FNK G+LLA
Sbjct: 578  -SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKEGSLLA 636

Query: 639  VIANENRIKI---------LETPESNSVDAAGVLSDNLRKLSVNPI--------STVTGA 681
            V ANEN IKI         L + E++S DA+   S+ + K  +NP+        + +  A
Sbjct: 637  VSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAMTKPIINPMSVATAATSAALERA 695

Query: 682  GIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKIS 738
                    +N D +   D+KP IS E+ +KS++ K      PS C+SL LP   +  KIS
Sbjct: 696  SSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTEINEPSHCRSLKLPENARVTKIS 755

Query: 739  RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 798
            RL Y N G AI ALASN +HL+W+W RND   S +AT  VPP+L+QP  G   M ND  D
Sbjct: 756  RLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATASVPPQLWQPSSG-ILMTNDIND 814

Query: 799  SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 858
            +N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+
Sbjct: 815  NNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI 874

Query: 859  IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 918
            IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS  LN+LVSSG D QIFVW+ DGW
Sbjct: 875  IAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADGQIFVWNTDGW 934

Query: 919  GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-S 977
              Q  R LQ P G    A ++T +QFH+DQ RFL+VHET LAIYEA +L CLKQWFP  +
Sbjct: 935  EKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHETQLAIYEATKLECLKQWFPRDA 994

Query: 978  SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1037
            + PIS ATFSCD  ++F SF+D T+ +  ASNL ++CRI  +AYL    S  ++ P  IA
Sbjct: 995  AAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCRINPSAYLSANVSSSNIQPLVIA 1054

Query: 1038 AHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
            AHP +P QFAVGL++G V+V EP E    W V PP E
Sbjct: 1055 AHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1091

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max]

 Score = 1197 bits (3096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/1141 (55%), Positives = 787/1141 (68%), Gaps = 95/1141 (8%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFV-ALSLSDPTNKAV-----------TMDRPE- 266
            Q T +P     + W  + + +  +AVS   A+ L  P+  A            ++D P  
Sbjct: 240  QPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAALKHPRTPPTNPSVDYPSG 299

Query: 267  DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS 320
            DSD +++++ P+ I +E        + T+PG                 +  Q+F      
Sbjct: 300  DSDHVAKRTRPMGISDEVNLPVNVLSATFPG---------------HGQHSQAFNAPD-- 342

Query: 321  DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI 380
            D PKTV +TL +GSS PMSMDFHP+Q +LLLVGT+VGD  LW+V S ++L  RNFKVWD+
Sbjct: 343  DIPKTVVRTLNQGSS-PMSMDFHPMQQSLLLVGTHVGDIALWEVGSRERLVSRNFKVWDL 401

Query: 381  GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH 440
             ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAH
Sbjct: 402  SACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAH 461

Query: 441  VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 500
            VG VNDLAFS P KQ+ VITCGDDKTIKVWDA +G++ Y+FEGH APVYS+CPH KENI 
Sbjct: 462  VGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQ 521

Query: 501  FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
            FIFS ++DGKIKAWLYD+LG+RVDY+APG  CT MAYSA+G RLFSCGTSK+GES +VEW
Sbjct: 522  FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEW 581

Query: 561  NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620
            NESEGA+KRTYQG   +  S+ VV FDT K++ LAAGDD  IK WDM+ VQLLTT+DA G
Sbjct: 582  NESEGAVKRTYQG--FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADG 639

Query: 621  GLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSV 672
            GLP +PRI FNK+GTLLAV ANEN IKIL   +         NS+  A   S+ L K ++
Sbjct: 640  GLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLLRTLENSLYEASRASEALTKPTI 699

Query: 673  NPI-----------------STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK- 714
            NPI                 S V  AG+   + ++      DVKP IS E+ +KS++ K 
Sbjct: 700  NPISAAAAAATSAALAERASSVVAIAGMNGDTRNLG-----DVKPRISEESNDKSKIWKL 754

Query: 715  PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 774
                  S+C+SL LP  V+  KISRL Y N G AI ALASN +HL+W+W RN+   S +A
Sbjct: 755  TEINEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKA 814

Query: 775  TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 834
            T  + P+L+QP  G   M ND  DSN ++AVPCFALSKND+Y+ SASGG ISL+ +MTFK
Sbjct: 815  TATLQPQLWQPSSG-ILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK 873

Query: 835  TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894
            T+ T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL F
Sbjct: 874  TMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAF 933

Query: 895  SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954
            S  LN+LVSSG DAQI VW+ DGW  Q  R LQ P G    A S+T +QFH+DQ +FL+V
Sbjct: 934  SHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVV 993

Query: 955  HETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013
            HET LAIYEA +L  LKQWFP  SS PIS ATFSCD ++VF SF+D T+ +  ASNL ++
Sbjct: 994  HETQLAIYEATKLEGLKQWFPRDSSAPISYATFSCDSQLVFASFLDATICVFSASNLRLR 1053

Query: 1014 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1073
            CRI  ++YL P +   ++ P  IAAHP +P QFA+GL++G V+V EP E    W V PP 
Sbjct: 1054 CRINPSSYL-PASVSSNIQPLVIAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPI 1112

Query: 1074 E 1074
            E
Sbjct: 1113 E 1113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458875|ref|XP_003599718.1| WD repeat-containing protein, putative [Medicago truncatula] gi|357468121|ref|XP_003604345.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355488766|gb|AES69969.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355505400|gb|AES86542.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1193 bits (3086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 630/1140 (55%), Positives = 782/1140 (68%), Gaps = 91/1140 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPPQTTQSP- 230
            NWQH  C NP+PNPDI TLFVDH C             +   G   ++   PP     P 
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPF 239

Query: 231  -----------SSWNFSSSMLTDSAVSFV-ALSLSDPTNKAV-----------TMDRPE- 266
                       + W  + + +  +AVS   A+ L  P+               ++D P  
Sbjct: 240  QPNPAAVPTQLAGWMSNPTTVAHAAVSGAGAIGLGAPSMPGALKHPRTPPINPSVDYPSG 299

Query: 267  DSDILSEKS-PVRILNEQASTV-----TYPGVSLK---NIPDYSPKSSLKKEMFQSFGET 317
            DSD +++++ P+ I +E    V     T+PG       N PD  P               
Sbjct: 300  DSDHVAKRTRPMGITDEVNLPVNVLSGTFPGHGHSQAFNAPDDLP--------------- 344

Query: 318  SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKV 377
                 PKTV +TL +GSS PMSMDFHPVQ +LLLVGTNVG   LW+V S +KL  RNFKV
Sbjct: 345  ----LPKTVTRTLNQGSS-PMSMDFHPVQQSLLLVGTNVGGIALWEVGSREKLVSRNFKV 399

Query: 378  WDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI 437
            WD+ ACSM F+ ALV+DP VSVNRV+WSPDG+L GVAYS+HIVQ+Y+YH G D RQ LEI
Sbjct: 400  WDLSACSMPFQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHTGDDVRQHLEI 459

Query: 438  DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497
            DAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDAV+G++ Y+FEGH APVYS+CPH KE
Sbjct: 460  DAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAVSGAKQYTFEGHEAPVYSVCPHYKE 519

Query: 498  NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557
            NI FIFS ++DGKIKAWLYD+LG+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES +
Sbjct: 520  NIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSI 579

Query: 558  VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
            VEWNESEGA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT+D
Sbjct: 580  VEWNESEGAVKRTYQGFRKR--SMGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVD 637

Query: 618  AGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNLR 668
            A GGLP +PRI FNK+GTLLAV AN+N IKI         L T E+NS+  A   S+ + 
Sbjct: 638  ADGGLPASPRIRFNKDGTLLAVSANDNGIKIVANADGIRLLRTLENNSMYDASRASE-MA 696

Query: 669  KLSVNPISTVTG---------AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 716
            K ++N +S+            A        +N D +   DVKP IS EA +KS++ K   
Sbjct: 697  KPTINSMSSAAAATSAALAERASSVAAIAGMNGDTRSMGDVKPRISEEANDKSKIWKLTE 756

Query: 717  FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776
               PS C+SL LP  V+ NKISRL Y N G AI ALASN +HL+W+WPRN+   S +A  
Sbjct: 757  INEPSHCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANA 816

Query: 777  KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 836
             VP +L+QP  G   M ND  DSN +++VPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 817  SVPAQLWQPSSG-ILMTNDIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 875

Query: 837  LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 896
             T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS 
Sbjct: 876  TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 935

Query: 897  ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
             LN+LVSSG DAQI VW+ DGW  Q  R LQ P G    A S+T +QFH+DQ +FL+VHE
Sbjct: 936  VLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHE 995

Query: 957  THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015
            T LAI+EA +L CLKQW P  SS PIS ATFSCD ++++ SF+D T+ +  ASNL ++CR
Sbjct: 996  TQLAIFEATKLECLKQWAPRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCR 1055

Query: 1016 ILSTAYLRPTTSC-LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
            I   AYL  + S   +V P  IAAHP +  QFAVGL++G V+V EP E    W V PP+E
Sbjct: 1056 INPPAYLPASVSSNSNVQPLVIAAHPHEANQFAVGLSDGGVHVFEPLESEGKWGVPPPNE 1115

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554802|ref|XP_003545731.1| PREDICTED: topless-related protein 1-like isoform 1 [Glycine max]

 Score = 1192 bits (3085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1130 (55%), Positives = 775/1130 (68%), Gaps = 71/1130 (6%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FE+ KQ + EALD HD +KA+ IL KDLK FA  N+ELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEVMKQKYLEALDKHDRSKAVEILVKDLKVFATFNDELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY  D  SAR  M++ELK++IEANP+   KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSKYC-DTKSARAIMLVELKKLIEANPLFHDKLQFPNLKSSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC-QLQETD--------FSGQSSESNALPPQTTQSP- 230
            NWQH  C NP+PNPDI TLFVDH C QL              G   ++   PP     P 
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQLNGAPAPSPANNLLLGSLPKAGGFPPLGAHGPF 239

Query: 231  -----------SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
                       + W  + + +    VS  A+ L  P+  A            ++D P  D
Sbjct: 240  QPSPAPVPTPLAGWMSNPTTVAHPEVSGGAIGLGVPSIPAALKHPRTPPTYPSVDYPSGD 299

Query: 268  SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 326
            SD +S+++ P+ + +E    V     +        P         Q+F      D PKT 
Sbjct: 300  SDHVSKRTRPMGMSDEVNLPVNVLSATF-------PGHGHGHGHGQAFNAP--DDLPKTA 350

Query: 327  AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML 386
             +TL +G SSPMSMDFHPVQ TLLLVGTNVGD  LW+V S ++L +RNFKVWD+ ACSM 
Sbjct: 351  MRTLNQG-SSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMP 409

Query: 387  FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
            F+ ALV+DPGVSV RV+WSPDG+L GVAYS+HIVQ+Y+YH G D +Q LEIDAHVG VND
Sbjct: 410  FQAALVKDPGVSVYRVIWSPDGALFGVAYSRHIVQIYSYHSGDDVQQHLEIDAHVGGVND 469

Query: 447  LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
            LAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KENI FIFS +
Sbjct: 470  LAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTA 529

Query: 507  VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566
            +DGKIKAWLYD+LG+RVDY+APG  CT MAYSA+G RLFSCGTSK+ ES +VEWNESEGA
Sbjct: 530  LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDAESSIVEWNESEGA 589

Query: 567  IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
            +KRTYQG   +  S+  V FDT K++ LAAGDD  IK WDM+ +QLLTT+DA GGLP +P
Sbjct: 590  VKRTYQG--FRKRSLGFVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPGSP 647

Query: 627  RICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPISTV 678
            RI FNK+G LLAV A EN IKIL   +         NS+      S+ + K ++NPIS  
Sbjct: 648  RIRFNKDGALLAVSAKENGIKILANADGIRLLRTLENSLYDTSRTSEVMTKPTINPISAA 707

Query: 679  TGAGIAN----------GSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQS 725
              A  +           G  ++N D +   DVKP IS E+ +KS++ K      PS+C+S
Sbjct: 708  AAAATSAALGERALSVVGINAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRS 767

Query: 726  LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 785
            L LP  V+ NKISRL Y N G AI ALASN +HL+W+W RND   + +A+  V P+L+QP
Sbjct: 768  LKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTVKASASVQPQLWQP 827

Query: 786  RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT 845
              G   M ND TDSN+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P 
Sbjct: 828  SSG-ILMTNDITDSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPA 886

Query: 846  ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 905
            A  LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS  LN+LVSSG
Sbjct: 887  ANFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSG 946

Query: 906  GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 965
             DAQI VW+ DGW  Q  R LQ P G    A ++T +QFH+DQ RFL+VHET LAIYEA 
Sbjct: 947  ADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEAT 1006

Query: 966  ELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1024
            +L CLKQWFP  SS PIS ATFSCD ++++ SF+D T+ +   SNL +QCRI  +AYL  
Sbjct: 1007 KLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVFSVSNLRLQCRINPSAYLSA 1066

Query: 1025 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
            + S  +V P  IAAHP +P QFAVGL++G V+V EP E    W V PP E
Sbjct: 1067 SVSS-NVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIE 1115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata]

 Score = 1191 bits (3082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1131 (55%), Positives = 782/1131 (69%), Gaps = 88/1131 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W+DVE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD AKA+ IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP++K        N SL
Sbjct: 121  LENFRENEQLSKY-GDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK--------NSSL 171

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   ++   PP       
Sbjct: 172  NWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPF 231

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPE------------- 266
            Q T +P     + W  +   +T  AVS  A+ L  P+  A  +  P              
Sbjct: 232  QPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 291

Query: 267  DSDILSEKS-PVRILNEQASTVTYPGVSLKNIP-DYSPKSSLKKEMFQSFGETSFSDFPK 324
            DSD LS+++ P+ I +E             N+P +  P S       Q+F  ++  D PK
Sbjct: 292  DSDHLSKRTRPIGISDE------------INLPVNVLPVSFTGHSHSQAF--SAPEDLPK 337

Query: 325  TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS 384
            TV +TL +GSS PMSMDFHPVQ TLLLVGTNVGD GLW+V S ++L +RNFKVWD+GACS
Sbjct: 338  TVTRTLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 396

Query: 385  MLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNV 444
            M  + ALV+DPGVSVNRV+WSPDGSL GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG V
Sbjct: 397  MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 456

Query: 445  NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFS 504
            ND+AFS P KQ+ VITCGDDKTIKVWDA  G++ Y FEGH APVYS+CPH KENI FIFS
Sbjct: 457  NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFS 516

Query: 505  ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564
             ++DGKIKAWLYD+LG+RVDY+APG  CT MAYSA+G RLFSCGTSK+GESF+VEWNESE
Sbjct: 517  TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESE 576

Query: 565  GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 624
            GA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ VQLLT+IDA GGLP 
Sbjct: 577  GAVKRTYQGFRKR--SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA 634

Query: 625  NPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPIS 676
            +PRI FNK+G LLAV  N+N IKIL T +         N    A   S+N  K +++PIS
Sbjct: 635  SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPIS 693

Query: 677  -----TVTGAGIANGSVSVNEDPK--------EDVKPEISVEAENKSEVEK-PLFARPSE 722
                   T AG+A+ + S+   P          DVKP I+ E+ +KS+V K    + P++
Sbjct: 694  AAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 753

Query: 723  CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 782
            C+SL LP  ++A KISRL + N G AI ALASN +HL+W+W R +   S +AT  V P+L
Sbjct: 754  CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 813

Query: 783  YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 842
            +QP  G   M ND TDSN +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP
Sbjct: 814  WQPPSG-IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP 872

Query: 843  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 902
             P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GHSKR+TGL FS ALN+LV
Sbjct: 873  PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 932

Query: 903  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 962
            SSG D+Q+ VW  DGW  Q  R LQ P G    A S+T +QFH+DQ  FL+VHET LAI+
Sbjct: 933  SSGADSQLCVWGSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 992

Query: 963  EAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021
            E  +L C+KQW P  SS PI+ ATFSCD ++V+  F+D T+ +  A+NL+++CRI  +AY
Sbjct: 993  ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1052

Query: 1022 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1072
            L P     +V+P  IAAHP +P +FA+GL++G V+V EP E    W V PP
Sbjct: 1053 L-PAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1102

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839887|ref|XP_002887825.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata] gi|297333666|gb|EFH64084.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata]

 Score = 1191 bits (3080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1126 (54%), Positives = 778/1126 (69%), Gaps = 81/1126 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD  KA+ IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP+++  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C+L               G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAGGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSL-------------SDPTNKAVTMDRPE 266
            Q T SP     + W  S S +   AVS  A++L             + PTN AV  D P 
Sbjct: 240  QPTPSPVPTPLAGWMSSPSSVPHPAVSGGAIALGAPSIQAALKHPRTPPTNSAV--DYPS 297

Query: 267  -DSDILSEKS-PVRILNEQASTV-----TYPGVSLKN-----IPDYSPKSSLKKEMFQSF 314
             DSD +S+++ P+ I +E +  V     T+PG +  +     +PD               
Sbjct: 298  GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKVPD--------------- 342

Query: 315  GETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN 374
                  D PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  + 
Sbjct: 343  ------DLPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKT 395

Query: 375  FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
            FKVWD+  CSM  + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ 
Sbjct: 396  FKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQH 455

Query: 435  LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
            LEIDAHVG VND+AFS P KQ+ V TCGDDKTIKVWDA TG + ++FEGH APVYS+CPH
Sbjct: 456  LEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRHTFEGHEAPVYSICPH 515

Query: 495  AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554
             KENI FIFS ++DGKIKAWLYD++G+RVDY+APG  CT MAYSA+G RLFSCGTSK+GE
Sbjct: 516  YKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGE 575

Query: 555  SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614
            SF+VEWNESEGA+KRTYQG      S+ VV FDT K++ LAAGDD  IK WDM+ +QLLT
Sbjct: 576  SFIVEWNESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLT 633

Query: 615  TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 673
             IDA GGL  +PRI FNK G+LLAV AN+N IK++   +    +     LS    K ++N
Sbjct: 634  AIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAIN 693

Query: 674  PISTVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPS 730
             I              +N D +   DVKP I+ E+ +KS+V K      PS+C+SL LP 
Sbjct: 694  SIPVAERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTELGEPSQCRSLRLPE 753

Query: 731  KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 790
             ++A KISRL + N G AI ALASN +HL+W+W RND   + +AT  VPP+ +QP  G  
Sbjct: 754  NMRATKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASVPPQQWQPASG-I 812

Query: 791  FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA 850
             M ND  ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LA
Sbjct: 813  LMTNDVVETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA 872

Query: 851  FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 910
            F+P DNN+IAIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+
Sbjct: 873  FHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQL 932

Query: 911  FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 970
             VW+ DGW  Q  + LQ P G  T A S+T +QFH+DQ  FL+VHET LAIYE  +L C+
Sbjct: 933  CVWNTDGWEKQKSKVLQIPQGRSTSALSDTRVQFHQDQVHFLVVHETQLAIYETTKLECM 992

Query: 971  KQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1028
            KQW P+  SS PI+ ATFSCD ++++TSF+D T+ +  ++NL ++CR+  +AYL  + S 
Sbjct: 993  KQW-PVRESSAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSN 1051

Query: 1029 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
             +V+P  IAAHP +   FAVGL++G V++ EP E    W V PP E
Sbjct: 1052 SNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1092
TAIR|locus:2198888	1120	TPR1 "TOPLESS-related 1" [Arab	0.735	0.716	0.559	1.20000000015e-314
TAIR|locus:2036204	1131	TPL "TOPLESS" [Arabidopsis tha	0.791	0.763	0.537	1.10000000001e-313
TAIR|locus:2086770	1131	TPR2 "TOPLESS-related 2" [Arab	0.648	0.625	0.489	2.4e-269
TAIR|locus:2040100	740	AT2G25420 "AT2G25420" [Arabido	0.321	0.474	0.361	8.2e-86
ASPGD|ASPL0000032162	1364	AN8468 [Emericella nidulans (t	0.556	0.445	0.239	4.8e-17
MGI|MGI:1918511	476	Poc1b "POC1 centriolar protein	0.229	0.527	0.242	3.5e-14
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.187	0.665	0.243	8.4e-14
TAIR|locus:2172432	523	AT5G43920 "AT5G43920" [Arabido	0.168	0.351	0.264	9.9e-14
FB|FBgn0040066	361	wds "will die slowly" [Drosoph	0.187	0.567	0.247	1.1e-13
UNIPROTKB|Q5M786	334	wdr5 "WD repeat-containing pro	0.187	0.613	0.243	1.2e-13

TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2337 (827.7 bits), Expect = 1.2e-314, Sum P(2) = 1.2e-314
 Identities = 463/827 (55%), Positives = 589/827 (71%)

Query:   255 PTNKAVTMDRPE-DSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQS 313
             P+N AV  D P  DSD +S+++    ++++ S     GV++  +P   P  +      Q+
Sbjct:   288 PSNSAV--DYPSGDSDHVSKRTRPMGISDEVSL----GVNM--LPMTFPGQAHGHN--QT 337

Query:   314 FGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIR 373
             F      D PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  +
Sbjct:   338 FKAPD--DLPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQK 394

Query:   374 NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 433
              FKVWD+  CSM  + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ
Sbjct:   395 TFKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQ 454

Query:   434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
              LEIDAHVG VND+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CP
Sbjct:   455 HLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICP 514

Query:   494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
             H KENI FIFS ++DGKIKAWLYD++G+RVDY+APG  CT MAYSA+G RLFSCGTSK+G
Sbjct:   515 HYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDG 574

Query:   554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613
             ESF+VEWNESEGA+KRTYQG   +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLL
Sbjct:   575 ESFIVEWNESEGAVKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLL 632

Query:   614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSV 672
             T IDA GGL  +PRI FNK G+LLAV AN+N IK++   +    +     LS    K ++
Sbjct:   633 TAIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAI 692

Query:   673 NPISTVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLP 729
             N I  V           +N D +   DVKP I+ E+ +KS+V K      PS+C+SL LP
Sbjct:   693 NSIPMVERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLP 752

Query:   730 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 789
               ++  KISRL + N G AI ALASN +HL+W+W RND   + +AT  +PP+ +QP  G 
Sbjct:   753 ENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGI 812

Query:   790 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 849
               M ND  ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT L
Sbjct:   813 -LMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 871

Query:   850 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 909
             AF+P DNN+IAIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ
Sbjct:   872 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 931

Query:   910 IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC 969
             + VW+ DGW  Q  + LQ P G  T + S+T +QFH+DQ  FL+VHET LAIYE  +L C
Sbjct:   932 LCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLEC 991

Query:   970 LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTS 1027
             +KQW P+  S+ PI+ ATFSCD ++++TSF+D T+ +  ++NL ++CR+  +AYL  + S
Sbjct:   992 MKQW-PVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLS 1050

Query:  1028 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
               +V+P  IAAHP +   FAVGL++G V++ EP E    W V PP E
Sbjct:  1051 NSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)]

 Score = 2335 (827.0 bits), Expect = 1.1e-313, Sum P(2) = 1.1e-313
 Identities = 481/895 (53%), Positives = 609/895 (68%)

Query:   223 PPQTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPV 277
             P Q T SP     + W  S S +   AVS  A++L  P+  A  +  P      +     
Sbjct:   238 PFQPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYP 296

Query:   278 RILNEQASTVTYP-GVSLK-NIP-DYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGS 334
                +E  S  T P G+S + N+  +  P S   +    S    +  D PKTVA+TL +GS
Sbjct:   297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356

Query:   335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394
             S PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  + FKVWD+  CSM  + ALV++
Sbjct:   357 S-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKE 415

Query:   395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK 454
             P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND++FS P K
Sbjct:   416 PVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNK 475

Query:   455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
             Q+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAW
Sbjct:   476 QLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAW 535

Query:   515 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574
             LYD++G+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA+KRTYQG 
Sbjct:   536 LYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGF 595

Query:   575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634
               +  S+ VV FDT K++ LAAGDD  IK WDM+ VQLLT ID  GGL  +PRI FNK G
Sbjct:   596 HKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEG 653

Query:   635 TLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTV-----TGAGIANGSV 688
             +LLAV  NEN IKI+   +    +     +S    K ++N I+       T AG A+ S 
Sbjct:   654 SLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATSAGHADRSA 713

Query:   689 SV------NEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLPSKVKANKISR 739
             +V      N D +   DVKP I+ E+ +KS++ K    + PS+C+SL LP  ++  KISR
Sbjct:   714 NVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISR 773

Query:   740 LTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 799
             L + N G AI ALASN +HL+W+W RN+   + +AT  +PP+ +QP  G   M ND  ++
Sbjct:   774 LIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI-LMTNDVAET 832

Query:   800 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI 859
             N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+I
Sbjct:   833 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII 892

Query:   860 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919
             AIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DGW 
Sbjct:   893 AIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWE 952

Query:   920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV 979
              Q  + L  P G    APS+T +QFH+DQ  FL+VHET LAIYE  +L C+KQW    S+
Sbjct:   953 KQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESL 1012

Query:   980 -PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1038
              PI+ ATFSCD ++V+ SF+D T+ +  ++NL ++CR+  +AYL  + S  +V+P  IAA
Sbjct:  1013 APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAA 1072

Query:  1039 HPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE--IVGDQPTSTSEGDRAMD 1091
             HP +P  FAVGL++G V++ EP E    W V PP E       PT+ S G  A D
Sbjct:  1073 HPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASD 1127

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010072 "primary shoot apical meristem specification" evidence=IGI;IMP

GO:0009733 "response to auxin stimulus" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IGI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1726 (612.6 bits), Expect = 2.4e-269, Sum P(2) = 2.4e-269
 Identities = 361/737 (48%), Positives = 483/737 (65%)

Query:     1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
             MS L+++LVFLILQFL+EE F ES H LE+ES F+F++K+FE+  L G+W++VE+YLS F
Sbjct:     1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60

Query:    61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
             TKVDDNRYS KI+FEIRKQ + EALD +D AKA+ IL KDLK FA  NEEL+KE+ QLLT
Sbjct:    61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120

Query:   121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
             L++ R++E LSKY GD  SAR  M  ELK++IEANP+ + KL FPS K  RLR LINQSL
Sbjct:   121 LENFRENEQLSKY-GDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSL 179

Query:   181 NWQHVHCANPQPNPDINTLFVDHVCQ-------LQETDF--SGQSSESNALPPQTTQSPS 231
             NWQH  C NP+PNPDI TLF+DH C        L   +   +  +  SN +P      P 
Sbjct:   180 NWQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPF 239

Query:   232 SWNFSSSMLTDSAVSFVAL---SLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVT 288
               N + +   ++   ++A    S S P+        P     ++E    R  +     + 
Sbjct:   240 QSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMD 299

Query:   289 YPGVSLKNIPDYSPKSSLKKEMF---QSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPV 345
             Y     + +      +    E+     S    S  D P+ V  T+ +GS   +SMDFHP 
Sbjct:   300 YQSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVV-ISMDFHPS 358

Query:   346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405
              HTLL VG + G+  LW+V S +K+    FK+W++ ACS++F+ ++V++P +SV RV WS
Sbjct:   359 HHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWS 418

Query:   406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465
             PDG+LLGV+++KH++ +YAY G SD RQ LEIDAHVG VNDLAF+ P KQ+ V+TCGDDK
Sbjct:   419 PDGNLLGVSFTKHLIHVYAYQG-SDLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDK 477

Query:   466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525
              IKVWD ++G + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD++G+RVDY
Sbjct:   478 LIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDY 536

Query:   526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585
             DAPG  CT M YSA+G RLFSCGTSKEG+SFLVEWNESEGA+KRTY G + +  S  VV 
Sbjct:   537 DAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKK--SAGVVQ 594

Query:   586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645
             FDT +++ LA G+D+ IK W+M+   LLT ++A GGLP  PR+ FNK+G LLAV   +N 
Sbjct:   595 FDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNG 654

Query:   646 IKILETPES-NSVDAAGVLSDNLRKLSVN-PISTVTGAGIANGSVSVNE--DPKEDVKPE 701
              KIL   +   ++ A    S    K S++  +ST   A   + ++   E  D     +P 
Sbjct:   655 FKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPT 714

Query:   702 I---SVEAENKSEVEKP 715
                  +EA +++ +EKP
Sbjct:   715 PIPNGIEAMSRT-MEKP 730

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 8.2e-86, Sum P(2) = 8.2e-86
 Identities = 132/365 (36%), Positives = 198/365 (54%)

Query:   720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 779
             PS+C +L+LP      KI+RLTY+  G  I ALA +  H +W W  +      E      
Sbjct:   375 PSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQNEFCKE-NVYPK 433

Query:   780 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 839
             PRL+QP+ G + M N+   S  Q++  CFA+    +YLFS SGG I+++ +  F+ + + 
Sbjct:   434 PRLHQPQSG-KTMENEMATS-VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNFEKVASF 489

Query:   840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899
               P+P AT   F P D  ++A+G+DD +I I+   S +V  KLEGH +++T L FS   N
Sbjct:   490 GSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFSRCFN 547

Query:   900 ILVSSGGDAQIFVWDVDGWGIQTCR-SLQTPDGVMTLAPSE--THIQFHKDQTRFLLVHE 956
             +LVSS  D ++ +W    W   T + S +       L  +   THIQF   Q   L+VH+
Sbjct:   548 VLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELLVVHD 607

Query:   957 THLAIYEAEELTCLKQWFPISSVP-ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015
               + +YE   L C  QW P +S P I+ AT+S D  +++  F  G++ I ++      C+
Sbjct:   608 GWIGLYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKTFMTLCQ 667

Query:  1016 ILSTAYLRPTTS--CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1073
             I  T++ + +TS   L VYP  +AAHP  P Q + GL+NG+V V++P   G  W    P 
Sbjct:   668 INLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGG-WGEAAPL 726

Query:  1074 EIVGD 1078
             E  GD
Sbjct:   727 EDNGD 731

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)]

 Score = 264 (98.0 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
 Identities = 168/701 (23%), Positives = 298/701 (42%)

Query:   300 YSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFH--PVQHTLLLVGTNVG 357
             +SP+ S+ + +F ++  + +S  PK V QT    S+   +++ H  PV+  +        
Sbjct:   711 FSPEGSITRRIF-NYNLSGWSQLPK-VEQTW---SAEQQTLENHLGPVESVVFSPDGKQL 765

Query:   358 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417
              +G +D            K+WD  A   L +T L    G +V  + +SPDG LL      
Sbjct:   766 VSGSYD---------DTVKIWD-PATGELLQT-LDGHSG-TVESLAFSPDGKLLASGSYD 813

Query:   418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477
             + + L+    G +  Q  E   H  ++  +AF+   K+++  +  DD TIK+WD  TG  
Sbjct:   814 NTIDLWDSATG-ELLQTFE--GHPHSIWSVAFAPDGKELA--SASDDSTIKIWDLATGEL 868

Query:   478 TYSFEGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTR 534
               + + H   V S+   P  K     + S S+D  IK W  +     +     G  G  +
Sbjct:   869 QQTLDSHSQSVRSVAFSPDGK----LLASSSLDSTIKVW--NPATGELQQSLEGRSGWVK 922

Query:   535 -MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI 593
              +A+S +G++L S G+ K        WN + G + +T +G      SV  V F     Q+
Sbjct:   923 SVAFSPDGKKLAS-GSEKNTVKL---WNPATGELLQTLEG---HSQSVRSVAFSPDGKQL 975

Query:   594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI--LET 651
              ++  D  IK+W+    +L  T   G  L     + F+ +G  L   +++N IK+  L T
Sbjct:   976 ASSSSDTTIKLWNSTTGELQQTFK-GHDLWIRA-VAFSPDGKHLVSGSDDNTIKLWDLAT 1033

Query:   652 PE--------SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN-EDPKEDVK--- 699
              E        S SV A     D+ +  S +  ST+     A G +    E   + V+   
Sbjct:  1034 SELQQSLEDHSRSVHAVAFSPDDKQLASSSLDSTIKLWDSATGELQRTLEGHSQGVRSVT 1093

Query:   700 --PEISVEAENKSEVEKPLFARP--SECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 755
               P+  + A N  +    L+  P   E Q  L     +++ +  + ++  G+ + +   +
Sbjct:  1094 FSPDGKLLASNSYDGTIKLW-NPLTGELQQTLTG---RSDWVDSVAFSPDGKQLASGYYD 1149

Query:   756 GVHLMWRWPRNDLTLSTEA-TTKVPPRLYQP-----RHGPQFMVNDTTDSNSQEAVPCF- 808
                 +W     +L  + E  + ++   ++ P       G         D  + E +  F 
Sbjct:  1150 STIKLWDSATGELLQTLEGHSDRIQSVVFSPDGKLLASGSYDQTAKLWDPATGELLQIFE 1209

Query:   809 ---------ALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 858
                      A S +   L S+S G  I L+  +T + + T+  P  +A S+AF+P  N +
Sbjct:  1210 GHSKWVESVAFSPDGKLLASSSYGETIKLWDPVTGELLQTLNDPDESAGSVAFSPDGNRL 1269

Query:   859 IAIGMDDSTILIYNARSSEVISKLEGHSKRV---TGLVFSDALNILVSSGGDAQIFVWDV 915
              ++ + D+ I  ++  + E++  L+GHSK V   TG   S  L+  +    + +I +W  
Sbjct:  1270 ASVDIFDTKI--WDPATGELLQALKGHSKWVWSRTGAGISIFLDQWLCLQ-EKRI-LWLP 1325

Query:   916 DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
               +    C S+   DGV+ L  S   + F +   RFL+  E
Sbjct:  1326 QSYQ-PFCISVN--DGVLVLGHSSGRVSFIQGP-RFLIESE 1362

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1918511 Poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Mus musculus (taxid:10090)]

 Score = 173 (66.0 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
 Identities = 64/264 (24%), Positives = 108/264 (40%)

Query:   427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486
             G  D   +     H   +    FS  CKQI+  T   D  + +W     +R Y + GH  
Sbjct:     4 GLEDPILERSFKGHKAAITSADFSPNCKQIA--TASWDTFLMLWSLKPHARAYRYVGHKD 61

Query:   487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546
              V SL    + N+  + S S D  ++ W+ D  G   ++ A       + +SA+G+ L  
Sbjct:    62 VVTSLQFSPQGNL--LASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLV- 118

Query:   547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606
               T+ E +S  V W+      +R    L    + V    F      I++  +D  IKIWD
Sbjct:   119 --TASEDKSIKV-WSMFR---QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD 172

Query:   607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN 666
                 Q +       G      + FN NGT +A   +++ +KI +   +  +    V S  
Sbjct:   173 TTNKQCVNNFSDSVGFANF--VDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCG 230

Query:   667 LRKLSVNPISTVTGAGIANGSVSV 690
             +  LS +P+        ++G+V +
Sbjct:   231 VNCLSFHPLGNSLVTASSDGTVKM 254

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005814 "centriole" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005932 "microtubule basal body" evidence=ISO

GO:0030030 "cell projection organization" evidence=IEA

GO:0042384 "cilium assembly" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
 Identities = 53/218 (24%), Positives = 103/218 (47%)

Query:   398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
             +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct:    21 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76

Query:   458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
              ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct:    77 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 133

Query:   518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
             +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct:   134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 187

Query:   578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
             +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct:   188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

TAIR|locus:2172432 AT5G43920 "AT5G43920" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 9.9e-14, Sum P(3) = 9.9e-14
 Identities = 54/204 (26%), Positives = 96/204 (47%)

Query:     7 DLVFLILQFLNEEGFTESAHMLERESRFYF---DMKFFEDMILDGKWEDVEQYLSSF--T 61
             + + +++Q L   GF  SA  LE ES+  +   D +F E  +L G W+   Q L      
Sbjct:    19 EFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLSGNWDSCVQVLDRIFDN 78

Query:    62 KVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL 121
              +DD R +T +Y  + KQ   E L   D++ ALN+L+K       G E++ +    ++  
Sbjct:    79 SMDDTR-NTALYL-VFKQCLLEYLKRGDVSLALNVLRKQAPLLRMGKEKIHRLACDIVYS 136

Query:   122 DDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLN 181
              ++   E+ +      L  R+ +++EL+++I   PI+        I  +RL  L+  ++ 
Sbjct:   137 KEMESGEVDNCL---VLDLRRKLLVELEKLIPL-PIV--------IPERRLEHLVETAVM 184

Query:   182 WQHVHCANPQPNPDINTLFVDHVC 205
              Q   C     + D  +L+ DH C
Sbjct:   185 DQIDTCMYHN-SCDAVSLYKDHCC 207

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)]

 Score = 170 (64.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
 Identities = 54/218 (24%), Positives = 104/218 (47%)

Query:   398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
             +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+  + + 
Sbjct:    74 AVSAVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSRLL- 129

Query:   458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
              ++  DDKT+KVW+  TG    + +GH    Y  C +     + I S S D  ++ W   
Sbjct:   130 -VSGSDDKTLKVWELSTGKSLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVR 186

Query:   518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
             +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct:   187 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 240

Query:   578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
             +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct:   241 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 278

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IPI

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0044665 "MLL1/2 complex" evidence=ISS

GO:0044666 "MLL3/4 complex" evidence=IDA

UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 170 (64.9 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 53/218 (24%), Positives = 103/218 (47%)

Query:   398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
             +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct:    47 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102

Query:   458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
              ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct:   103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159

Query:   518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
             +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct:   160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213

Query:   578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
             +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct:   214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WV90	TPR1_ARATH	No assigned EC number	0.5442	0.9633	0.9392	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1092
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-14
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	1e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-06
smart00320	40	smart00320, WD40, WD40 repeats	8e-06
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  112 bits (283), Expect = 3e-27
 Identities = 81/324 (25%), Positives = 126/324 (38%), Gaps = 47/324 (14%)

Query: 331 IEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT 389
           ++G +     + F P    L         TG  D            KVWD+   +     
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLA--------TGSGD---------GTIKVWDL--ETGELLR 45

Query: 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 449
            L       V  V  S DG+ L    S   ++L+    G   R    +  H   V+ +AF
Sbjct: 46  TLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAF 101

Query: 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG 509
           S P  +I + +   DKTIKVWD  TG    +  GH   V S+      +  F+ S S DG
Sbjct: 102 S-PDGRI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS--PDGTFVASSSQDG 157

Query: 510 KIKAWLYDSLGARVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567
            IK W  D    +      G       +A+S +G +L S  +   G   L  W+ S G  
Sbjct: 158 TIKLW--DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD--GTIKL--WDLSTGKC 211

Query: 568 KRTYQGLQLQH-NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
             T +G    H N V+ V F      + +  +D  I++WD+   + + T+        N 
Sbjct: 212 LGTLRG----HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG----HTNS 263

Query: 627 --RICFNKNGTLLAVIANENRIKI 648
              + ++ +G  LA  + +  I+I
Sbjct: 264 VTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 89.4 bits (220), Expect = 2e-18
 Identities = 89/415 (21%), Positives = 162/415 (39%), Gaps = 29/415 (6%)

Query: 291 GVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLL 350
           G SL ++   S  SS    +  +    S    P   +  L     S  S+ F P    LL
Sbjct: 22  GPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGE-LL 80

Query: 351 LVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 409
           L G++ G   LWD+++G+KL                   +L      SV+++   SPDG+
Sbjct: 81  LSGSSDGTIKLWDLDNGEKLIK-----------------SLEGLHDSSVSKLALSSPDGN 123

Query: 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469
            + +A S     +  +   +  +    ++ H  +V  LAFS P  ++       D TIK+
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKL 182

Query: 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529
           WD  TG    +  GH  PV SL       +    S S DG I+ W   +        +  
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA-SGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589
                 ++S +G  L S  +      + +  + S          L    +SV  V F   
Sbjct: 242 SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT------LSGHSSSVLSVAFSPD 295

Query: 590 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKI 648
              + +   D  +++WD+   +LL+++   G       + F+ +G+LL    +++  I++
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355

Query: 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703
            +      +      S N+  +S +P   V  +G  +G+V + +     +   + 
Sbjct: 356 WDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 26/213 (12%)

Query: 805  VPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 863
            V C A S +   L + SG G I ++ + T + + T+   +     +A +  D   +A G 
Sbjct: 12   VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70

Query: 864  DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 923
             D TI +++  + E +  L GH+  V+ + FS    IL SS  D  I VWDV+     T 
Sbjct: 71   SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TG 125

Query: 924  RSLQT----PDGVMTLAPSETHIQF----HKDQTRFLLVHETHLAIYEAEELTCLKQWFP 975
            + L T     D V ++A S     F     +D T    +      +++     C+     
Sbjct: 126  KCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGT----IK-----LWDLRTGKCVAT-LT 174

Query: 976  ISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
              +  ++   FS D   + +S  DGT+ + + S
Sbjct: 175  GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 18/208 (8%)

Query: 802  QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860
               V   A S +   L S+S    I ++ V T K + T+   +    S+AF+P D   +A
Sbjct: 93   TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151

Query: 861  IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWG 919
                D TI +++ R+ + ++ L GH+  V  + FS     L+SS  D  I +WD+  G  
Sbjct: 152  SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211

Query: 920  IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFPI 976
            + T R     +GV ++A S            +LL     +  + +++     C++     
Sbjct: 212  LGTLRG--HENGVNSVAFS---------PDGYLLASGSEDGTIRVWDLRTGECVQT-LSG 259

Query: 977  SSVPISQATFSCDCRMVFTSFVDGTLSI 1004
             +  ++   +S D + + +   DGT+ I
Sbjct: 260  HTNSVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 34 FYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAK 92
           + + K   ++IL G W++  ++LSS       R S K+ FE+RKQ F E +    + +
Sbjct: 1  EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 802 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860
              V   A S +   L S+S  G I L+ + T K + T+        S+AF+P    + +
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236

Query: 861 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
            G +D TI +++ R+ E +  L GH+  VT L +S     L S   D  I +WD
Sbjct: 237 -GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 81/459 (17%), Positives = 174/459 (37%), Gaps = 72/459 (15%)

Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAPVY 489
              L +  H  ++  +AFS P  ++ +++   D TIK+WD   G +        H + V 
Sbjct: 56  LSSLLLRGHEDSITSIAFS-PDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVS 113

Query: 490 SLCPHAKENIHFIFSIS-VDGKIKAW-LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547
            L   + +    + + S +DG +K W L          +      T +A+S +G+ L S 
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173

Query: 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWD 606
            +       +  W+   G    T  G     + VS + F       I +   D  I++WD
Sbjct: 174 SSLD---GTIKLWDLRTGKPLSTLAG---HTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SD 665
           ++  +LL +  +G    ++    F+ +G+LLA  +++  I++ +   S+S+       S 
Sbjct: 228 LSTGKLLRSTLSG--HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285

Query: 666 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725
           ++  ++ +P   +  +G ++G+V + +     +   ++++                    
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE----------------- 328

Query: 726 LLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 784
                      +S L+++ +G   +   + +G   +W         + E           
Sbjct: 329 ---------GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE----------- 368

Query: 785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPS 843
                               V   + S +   + S S  G + L+ + T   +  +   +
Sbjct: 369 ----------------GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412

Query: 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882
              TSL F+P D   +A G  D+TI +++ ++S      
Sbjct: 413 SRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.0 bits (154), Expect = 2e-10
 Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 13/222 (5%)

Query: 811  SKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 869
              +     S+  G + L+ + T  K I T+   S + TSLAF+P    + +    D TI 
Sbjct: 122  GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181

Query: 870  IYNARSSEVISKLEGHSKRVTGLVFS-DALNILVSSGGDAQIFVWDVDGWG-IQTCRSLQ 927
            +++ R+ + +S L GH+  V+ L FS D   ++ S   D  I +WD+     +++  S  
Sbjct: 182  LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 928  TPDGVMTLAPSETHIQFHKDQTRFLLVHETH-LAIYEAEELTCLKQWFPISSVPISQATF 986
            +   V +         F  D +          + +++    + L +     S  +    F
Sbjct: 242  SDSVVSS---------FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292

Query: 987  SCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1028
            S D +++ +   DGT+ + +    ++   +    +  P +S 
Sbjct: 293  SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 10/218 (4%)

Query: 805  VPCFALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 862
            V   A S +   L ++    G I L+ + T K + + +     +   +F+P D +++A G
Sbjct: 201  VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP-DGSLLASG 259

Query: 863  MDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 921
              D TI +++ RS S ++  L GHS  V  + FS    +L S   D  + +WD++   + 
Sbjct: 260  SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319

Query: 922  TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPI 981
            +  +L+  +G        + + F  D +  +        I   +  T            +
Sbjct: 320  SSLTLKGHEG------PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV 373

Query: 982  SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019
               +FS D R+V +   DGT+ + + S   +   +   
Sbjct: 374  LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 83/472 (17%), Positives = 173/472 (36%), Gaps = 76/472 (16%)

Query: 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515
           I ++    D  + + D      +    GH   + S+      +   + S S DG IK W 
Sbjct: 40  ILLLALLSDSLVSLPD----LSSLLLRGHEDSITSIAFS--PDGELLLSGSSDGTIKLWD 93

Query: 516 YDSLGARVD--YDAPGLGCTRMAY-SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572
            D+    +           +++A  S +G  +    +S +G   +  W+ S         
Sbjct: 94  LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG--TVKLWDLSTPGKLIRT- 150

Query: 573 GLQLQHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631
            L+    SV+ + F      + +    D  IK+WD+   + L+T+        +  + F+
Sbjct: 151 -LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS--LAFS 207

Query: 632 KNGTLLAVIANENR-IKI--LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688
            +G LL    + +  I++  L T +      +G     +   S +     +G+  ++G++
Sbjct: 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS--SDGTI 265

Query: 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 748
            +                                         ++++     T +    +
Sbjct: 266 RL---------------------------------------WDLRSSSSLLRTLSGHSSS 286

Query: 749 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 808
           + ++A +    +        + S++ T ++    +    G        T    +  V   
Sbjct: 287 VLSVAFSPDGKLL------ASGSSDGTVRL----WDLETGKLLSS--LTLKGHEGPVSSL 334

Query: 809 ALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 866
           + S + + L S     G I L+ + T K + T+   S    S++F+P D  V++ G  D 
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDG 392

Query: 867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 918
           T+ +++  +  ++  L+GH+ RVT L FS     L S   D  I +WD+   
Sbjct: 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 27/203 (13%)

Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
           +TL   SSS +S+ F P    LL  G++ G   LWD+ +G+ L     K           
Sbjct: 278 RTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLK----------- 325

Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVND 446
                      V+ + +SPDGSLL    S    ++L+         + L+      NV  
Sbjct: 326 ------GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL----RTGKPLKTLEGHSNVLS 375

Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
           ++FS   + +S  +   D T+++WD  TGS   + +GH + V SL          + S S
Sbjct: 376 VSFSPDGRVVS--SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS--LASGS 431

Query: 507 VDGKIKAWLYDSLGARVDYDAPG 529
            D  I+ W   +    V +   G
Sbjct: 432 SDNTIRLWDLKTSLKSVSFSPDG 454

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.3 bits (126), Expect = 5e-07
 Identities = 28/161 (17%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590
           G T +A+S +G+ L +          +  W+   G + RT +G       V  V      
Sbjct: 11  GVTCVAFSPDGKLLATGSGDGT----IKVWDLETGELLRTLKGHTG---PVRDVAASADG 63

Query: 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKIL 649
             + +   D  I++WD+   + + T+    G       + F+ +G +L+  + +  IK+ 
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690
           +      +      +D +  ++ +P  T   +   +G++ +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 18/130 (13%)

Query: 882  LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 941
            L+GH+  VT + FS    +L +  GD  I VWD++   +       T   V         
Sbjct: 5    LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPV-------RD 56

Query: 942  IQFHKDQTRFLLVHETHLA-IYEAEELTCLKQWF----PISSVPISQATFSCDCRMVFTS 996
            +    D T            +++ E   C++        +SSV      FS D R++ +S
Sbjct: 57   VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV-----AFSPDGRILSSS 111

Query: 997  FVDGTLSIHE 1006
              D T+ + +
Sbjct: 112  SRDKTIKVWD 121

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 40/180 (22%)

Query: 321 DFPKTVAQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF---- 375
           D       T + G +    S+ F P   T +   +  G   LWD+ +G+   +       
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGK--CVATLTGHT 177

Query: 376 ------------------------KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411
                                   K+WD+   S       +R     VN V +SPDG LL
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLL 234

Query: 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
                   ++++    G        +  H  +V  LA+S   K+  + +   D TI++WD
Sbjct: 235 ASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKR--LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 875 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
           S E++  L+GH+  VT + FS     L S   D  I +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 4  LNKDLVFLILQFLNEEGFTESAHMLERESRF 34
             +L  LIL++L   G+ E+A  L++ES  
Sbjct: 2  SRSELNRLILEYLLRNGYEETAETLQKESGL 32

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
           +++  L+GH+  VT + FS   N+L S   D  + VWD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
           +    +  H G V  +AFS     +   +  DD T++VWD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
            +  H G V  +AFS   K +   +  DD TIK+WD
Sbjct: 7   TLKGHTGPVTSVAFSPDGKYL--ASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 849 LAFNPHDNNVIAIGMDDSTILIYN-------ARSSEVISKLEGHSKRVTGLVF-SDALNI 900
           +AFNP D   +    +D TI+ +           S+ I  L+GH+K+V  + F   A+N+
Sbjct: 81  VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140

Query: 901 LVSSGGDAQIFVWDVD 916
           L S+G D  + VWDV+
Sbjct: 141 LASAGADMVVNVWDVE 156

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1092
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	99.98
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.98
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG1963	792	consensus WD40 repeat protein [General function pr	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
PTZ00420	568	coronin; Provisional	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG1963	792	consensus WD40 repeat protein [General function pr	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.87
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.87
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.85
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG4328	498	consensus WD40 protein [Function unknown]	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.82
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.81
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.81
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.8
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.8
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.78
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.78
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.75
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.75
KOG4227	609	consensus WD40 repeat protein [General function pr	99.75
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.75
KOG1334	559	consensus WD40 repeat protein [General function pr	99.75
KOG0649	325	consensus WD40 repeat protein [General function pr	99.75
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.75
KOG1310	758	consensus WD40 repeat protein [General function pr	99.74
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.74
KOG1188	376	consensus WD40 repeat protein [General function pr	99.73
KOG4227	609	consensus WD40 repeat protein [General function pr	99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG0649	325	consensus WD40 repeat protein [General function pr	99.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.72
KOG1188	376	consensus WD40 repeat protein [General function pr	99.71
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.71
PRK11028	330	6-phosphogluconolactonase; Provisional	99.71
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.71
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.7
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.7
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.69
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.69
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.68
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.67
PRK01742	429	tolB translocation protein TolB; Provisional	99.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.65
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.65
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.65
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.63
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.63
COG4946	668	Uncharacterized protein related to the periplasmic	99.63
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.62
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.62
PRK01742	429	tolB translocation protein TolB; Provisional	99.62
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.61
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.61
KOG2139	445	consensus WD40 repeat protein [General function pr	99.6
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.6
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.59
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.59
KOG1334	559	consensus WD40 repeat protein [General function pr	99.58
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.58
KOG1310	758	consensus WD40 repeat protein [General function pr	99.58
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.57
KOG2139	445	consensus WD40 repeat protein [General function pr	99.57
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.57
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.56
PRK03629	429	tolB translocation protein TolB; Provisional	99.56
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.55
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.55
PRK05137	435	tolB translocation protein TolB; Provisional	99.54
PRK03629	429	tolB translocation protein TolB; Provisional	99.54
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.54
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.53
KOG2321	703	consensus WD40 repeat protein [General function pr	99.53
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.53
KOG2315	566	consensus Predicted translation initiation factor	99.53
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.52
PRK04922	433	tolB translocation protein TolB; Provisional	99.52
PRK04922	433	tolB translocation protein TolB; Provisional	99.51
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.5
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.49
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.48
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.47
KOG2315	566	consensus Predicted translation initiation factor	99.46
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.43
KOG2321	703	consensus WD40 repeat protein [General function pr	99.43
KOG2314	698	consensus Translation initiation factor 3, subunit	99.42
COG4946	668	Uncharacterized protein related to the periplasmic	99.41
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	99.4
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.4
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.39
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.38
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.38
PRK01029	428	tolB translocation protein TolB; Provisional	99.38
KOG2314	698	consensus Translation initiation factor 3, subunit	99.37
PRK01029	428	tolB translocation protein TolB; Provisional	99.36
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.36
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.35
PRK00178	430	tolB translocation protein TolB; Provisional	99.34
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.33
PRK04792	448	tolB translocation protein TolB; Provisional	99.33
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.33
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.31
PRK04792	448	tolB translocation protein TolB; Provisional	99.31
PRK00178	430	tolB translocation protein TolB; Provisional	99.31
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.31
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.31
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.3
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.28
KOG4547	541	consensus WD40 repeat-containing protein [General	99.23
KOG4547	541	consensus WD40 repeat-containing protein [General	99.18
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.17
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.16
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.05
PRK04043	419	tolB translocation protein TolB; Provisional	99.04
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.03
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.01
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.97
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.96
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.96
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.95
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.94
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.94
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.93
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.89
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.88
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.87
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.86
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.86
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.85
PRK04043	419	tolB translocation protein TolB; Provisional	98.85
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.79
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.78
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.76
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.75
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.75
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.72
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.71
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.69
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.66
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.65
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.65
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.64
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.61
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.61
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.6
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.59
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.56
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.55
PRK02888	635	nitrous-oxide reductase; Validated	98.52
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.52
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.52
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.49
PRK02888	635	nitrous-oxide reductase; Validated	98.49
KOG2695	425	consensus WD40 repeat protein [General function pr	98.48
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.47
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.45
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.44
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.43
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.41
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	98.39
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.39
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.38
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.38
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.37
KOG3621	726	consensus WD40 repeat-containing protein [General	98.35
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.35
KOG2695	425	consensus WD40 repeat protein [General function pr	98.35
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.32
KOG0396	389	consensus Uncharacterized conserved protein [Funct	98.3
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.24
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.19
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.15
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.11
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.1
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.1
PRK13616	591	lipoprotein LpqB; Provisional	98.09
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.08
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.02
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	97.99
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	97.95
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.94
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.93
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.93
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.93
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.92
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.9
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.9
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.86
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.85
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.84
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.81
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.72
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.71
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.71
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.69
COG3391	381	Uncharacterized conserved protein [Function unknow	97.69
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.68
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.66
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.65
KOG3621	726	consensus WD40 repeat-containing protein [General	97.65
PRK13616	591	lipoprotein LpqB; Provisional	97.59
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.59
COG3391	381	Uncharacterized conserved protein [Function unknow	97.56
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.47
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.47
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.42
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.41
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.36
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.36
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.34
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.32
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.31
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.16
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	97.12
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.11
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.09
PRK10115	686	protease 2; Provisional	97.09
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.08
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.01
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.98
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.95
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.92
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.85
KOG2395	644	consensus Protein involved in vacuole import and d	96.84
PHA02713	557	hypothetical protein; Provisional	96.83
PRK10115	686	protease 2; Provisional	96.82
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.78
KOG2395	644	consensus Protein involved in vacuole import and d	96.77
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.75
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.69
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.66
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.6
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.56
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.55
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.5
PHA02713	557	hypothetical protein; Provisional	96.48
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.46
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.39
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.31
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.19
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.15
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.11
PRK13684	334	Ycf48-like protein; Provisional	95.97
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.9
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.89
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.89
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.75
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.64
KOG2444	238	consensus WD40 repeat protein [General function pr	95.53
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.45
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.45
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.4
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.2
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.08
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	95.07
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.01
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	94.87
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.85
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.75
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.68
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.51
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.41
PHA03098	534	kelch-like protein; Provisional	94.16
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.12
PHA03098	534	kelch-like protein; Provisional	94.1
KOG2444	238	consensus WD40 repeat protein [General function pr	94.03
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.01
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.6
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.58
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.52
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.51
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.4
PRK13684	334	Ycf48-like protein; Provisional	93.1
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.08
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.93
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.82
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.7
PHA02790	480	Kelch-like protein; Provisional	92.55
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.37
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.33
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.29
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.11
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	91.89
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.59
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	91.5
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.06
PHA02790	480	Kelch-like protein; Provisional	91.01
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.01
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	90.97
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	90.4
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.35
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.26
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.21
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.19
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	90.18
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.17
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.11
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.92
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	89.59
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	89.58
COG5167	776	VID27 Protein involved in vacuole import and degra	89.54
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	89.54
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.35
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.26
COG3292	671	Predicted periplasmic ligand-binding sensor domain	89.21
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.37
COG3292	671	Predicted periplasmic ligand-binding sensor domain	88.35
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.35
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.15
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	87.69
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	87.54
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.49
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	87.28
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	87.11
COG5167	776	VID27 Protein involved in vacuole import and degra	86.88
KOG2247	615	consensus WD40 repeat-containing protein [General	86.67
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	86.59
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	86.52
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	86.51
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.41
PRK13613	599	lipoprotein LpqB; Provisional	86.37
PRK13614	573	lipoprotein LpqB; Provisional	86.29
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	86.24
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	86.19
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.16
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.11
COG4590	733	ABC-type uncharacterized transport system, permeas	85.31
PRK13613	599	lipoprotein LpqB; Provisional	84.71
COG4590	733	ABC-type uncharacterized transport system, permeas	84.5
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	84.24
COG5276	370	Uncharacterized conserved protein [Function unknow	83.67
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	83.35
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.23
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	82.02
PRK13614	573	lipoprotein LpqB; Provisional	81.91
cd08044	133	TAF5_NTD2 TAF5_NTD2 is the second conserved N-term	81.9

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.7e-72  Score=553.10  Aligned_cols=493  Identities=21%  Similarity=0.315  Sum_probs=416.4

Q ss_pred             hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhh
Q 001362            5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD---MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF   81 (1092)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~l~~Es~~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~   81 (1092)
                      +.|++|++.|+|+.+||.+|+.+||.|||+.+.   .+.|.+++++|+|+.++..+..+. +++.....++.|++.||+|
T Consensus        17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f   95 (519)
T KOG0293|consen   17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF   95 (519)
T ss_pred             cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence            569999999999999999999999999999875   899999999999999999998874 3334556679999999999


Q ss_pred             hhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCcccccc
Q 001362           82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGK  161 (1092)
Q Consensus        82 lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~  161 (1092)
                      ||++..|....|+.+||+.+.++. .+.++|++|+.-+..++-....+... .-.....|.+|+++|+++|||+++    
T Consensus        96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il----  169 (519)
T KOG0293|consen   96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL----  169 (519)
T ss_pred             HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence            999999999999999999988886 57788999988776654333222221 112356899999999999999999    


Q ss_pred             cCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCCCcCccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCCCCc
Q 001362          162 LKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLT  241 (1092)
Q Consensus       162 ~~~~~~p~~rL~~Ll~qa~~~q~~~c~~~~~~~~~~sL~~dh~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (1092)
                           +|++||++||+||++||+++|.||| ..+..|||.||.|.+      .+      +|+++               
T Consensus       170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------~q------ip~qt---------------  216 (519)
T KOG0293|consen  170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------LQ------IPSQT---------------  216 (519)
T ss_pred             -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------cc------CCchh---------------
Confidence                 9999999999999999999999999 455589999999988      44      34444               


Q ss_pred             CcccccccccCCCCCcccccccCCCCCCcccCCCccccccccCCcceecCcccCCcCCCCCCCchhhhcccccCCccccC
Q 001362          242 DSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD  321 (1092)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~s~~~~~~~~~~~~~~~~  321 (1092)
                                                                                                      
T Consensus       217 --------------------------------------------------------------------------------  216 (519)
T KOG0293|consen  217 --------------------------------------------------------------------------------  216 (519)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEE
Q 001362          322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  401 (1092)
Q Consensus       322 ~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~  401 (1092)
                           .++|..|+++||.+.||++|+ +||+++.|.+..||++.....+.-                ...+.+|..+|..
T Consensus       217 -----~qil~~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~y  274 (519)
T KOG0293|consen  217 -----WQILQDHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVSY  274 (519)
T ss_pred             -----hhhHhhCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcceee----------------eeeeecccCceEE
Confidence                 356789999999999999999 699999999999999876554321                1238899999999


Q ss_pred             EEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001362          402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  481 (1092)
Q Consensus       402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~  481 (1092)
                      +.||||.+||++|+.+..+.+||+.+|.......  .+|...+.+++|.|||.  .+++|+.|+++..||++ |..+..+
T Consensus       275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdlD-gn~~~~W  349 (519)
T KOG0293|consen  275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDLD-GNILGNW  349 (519)
T ss_pred             EEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecCC-cchhhcc
Confidence            9999999999999999999999999998766331  24668899999999999  79999999999999954 5556666


Q ss_pred             ecCC-cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001362          482 EGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       482 ~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                      ++-. ..|.++++  +.||+++++.+.|..|++++..+...+.. .....+|+++++|.|++++++.-.    +..+.+|
T Consensus       350 ~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~----~qei~LW  422 (519)
T KOG0293|consen  350 EGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQ----DQEIHLW  422 (519)
T ss_pred             cccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcc----cCeeEEe
Confidence            5543 45888888  56889999999999999999887665543 334568999999999999988765    4459999


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEE
Q 001362          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAV  639 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~  639 (1092)
                      |++....++.+.||.+...-|.++.-..+..++++||+|+.|+||+..+|+++..+.+|..  .|++|+|+| +..++|+
T Consensus       423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~AS  500 (519)
T KOG0293|consen  423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFAS  500 (519)
T ss_pred             ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhhc
Confidence            9999999999999996666677665566678999999999999999999999999998754  699999999 6678999


Q ss_pred             EeCCCeEEEEECCC
Q 001362          640 IANENRIKILETPE  653 (1092)
Q Consensus       640 ~~~dg~i~iw~~~~  653 (1092)
                      +++||+|+||-...
T Consensus       501 asDDgtIRIWg~~~  514 (519)
T KOG0293|consen  501 ASDDGTIRIWGPSD  514 (519)
T ss_pred             cCCCCeEEEecCCc
Confidence            99999999997653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.4e-63  Score=475.90  Aligned_cols=492  Identities=18%  Similarity=0.279  Sum_probs=403.6

Q ss_pred             hhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHh
Q 001362            4 LNKDLVFLILQFLNEEGFTESAHMLERESRFYFD----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ   79 (1092)
Q Consensus         4 ~~~~~~~li~q~L~~~g~~~s~~~l~~Es~~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q   79 (1092)
                      -..||||||+|||+|+.+.+++++||+|+++++|    ++.|-+.|.+|+||.++..+++|      +++.+.+..||||
T Consensus         6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEq   79 (508)
T KOG0275|consen    6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQ   79 (508)
T ss_pred             ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHH
Confidence            4579999999999999999999999999999998    89999999999999999999998      5555577899999


Q ss_pred             hhhhhccCCCHHHHHHHHHhh--ccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCcc
Q 001362           80 NFFEALDGHDIAKALNILKKD--LKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPI  157 (1092)
Q Consensus        80 ~~lEll~~~~~~~al~~l~~~--l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~  157 (1092)
                      ..|||+|.++...|..+||+.  +.-+.+.+|++|-+|+.||..+.++..+++.   +..++.|+..   |.+.+..++-
T Consensus        80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~---dssKEkrRa~---IAQ~ls~EV~  153 (508)
T KOG0275|consen   80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYG---DSSKEKRRAV---IAQALSGEVH  153 (508)
T ss_pred             HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcC---cchHHHHHHH---HHHHhcCceE
Confidence            999999999999999999984  4445677899999999999999998877632   2467777744   4444444332


Q ss_pred             cccccCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCCCcCccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCC
Q 001362          158 LQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSS  237 (1092)
Q Consensus       158 ~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~c~~~~~~~~~~sL~~dh~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (1092)
                              .+||+||..||+|||+||+++.+.|..+.  .                        .-|+.         ..
T Consensus       154 --------VVppSRLlaLlGQaLKWQqHQGLLPPGt~--i------------------------DLFRG---------kA  190 (508)
T KOG0275|consen  154 --------VVPPSRLLALLGQALKWQQHQGLLPPGTT--I------------------------DLFRG---------KA  190 (508)
T ss_pred             --------EcChHHHHHHHHHHhhhHhhcCCCCCCce--e------------------------eeccc---------hh
Confidence                    28999999999999999999865553110  0                        11111         11


Q ss_pred             CCCcCcccccccccCCCCCcccccccCCCCCCcccCCCccccccccCCcceecCcccCCcCCCCCCCchhhhcccccCCc
Q 001362          238 SMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGET  317 (1092)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~s~~~~~~~~~~~~  317 (1092)
                      .                       +|                   ...|..||.+..                       
T Consensus       191 A-----------------------~K-------------------~~~Ee~~Pt~l~-----------------------  205 (508)
T KOG0275|consen  191 A-----------------------MK-------------------DQEEERYPTQLA-----------------------  205 (508)
T ss_pred             h-----------------------hh-------------------hhHhhhchHHhh-----------------------
Confidence            0                       00                   001233454432                       


Q ss_pred             cccCCCcceeeec-ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC
Q 001362          318 SFSDFPKTVAQTL-IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG  396 (1092)
Q Consensus       318 ~~~~~p~~~~~~l-~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~  396 (1092)
                                +.+ -|.+..+.|..|||||+ +|++|+.||.|.|||..+|+..+...++.-|           -+--+.
T Consensus       206 ----------r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-----------~fMMmd  263 (508)
T KOG0275|consen  206 ----------RSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-----------NFMMMD  263 (508)
T ss_pred             ----------hheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhc-----------ceeecc
Confidence                      222 24556889999999998 6999999999999999999988765543222           133478


Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001362          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  476 (1092)
                      .+|.|+.||.|...||+|+.||.|++|.+.+|.+++...  ++|+..|+|+.||.|+.  .+++++.|.+++|.-+++|+
T Consensus       264 ~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK  339 (508)
T KOG0275|consen  264 DAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGK  339 (508)
T ss_pred             cceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccch
Confidence            999999999999999999999999999999999998532  38999999999999999  69999999999999999999


Q ss_pred             eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CceEEEEEccCC-CEEEEEecCCCC
Q 001362          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSANG-RRLFSCGTSKEG  553 (1092)
Q Consensus       477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~~~~s~dg-~~l~~~~~~~~~  553 (1092)
                      +++.|+||...|+...|  .+||..+++++.||+|++|+..+.++..++...+  .+|.++..-|.+ ..+++|..    
T Consensus       340 ~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr----  413 (508)
T KOG0275|consen  340 CLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR----  413 (508)
T ss_pred             hHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC----
Confidence            99999999999999999  5688999999999999999999999888776544  467788777754 56777754    


Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001362          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  633 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1092)
                      .+++++.++ .|+.++.+.......+...+++.+|.|.++++.++|+.++.|.+.+|.+-.++..|..  .+..++-+|.
T Consensus       414 sntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHPH  490 (508)
T KOG0275|consen  414 SNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHPH  490 (508)
T ss_pred             CCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCcc
Confidence            556999886 4778888876655567788889999999999999999999999999999999988754  5788999999


Q ss_pred             CCEEEEEeCCCeEEEEE
Q 001362          634 GTLLAVIANENRIKILE  650 (1092)
Q Consensus       634 ~~~l~~~~~dg~i~iw~  650 (1092)
                      .+.+|+-+.||.+++|.
T Consensus       491 qNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  491 QNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cchhhhhcccchhhhcC
Confidence            99999999999999995

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-59  Score=499.90  Aligned_cols=576  Identities=18%  Similarity=0.251  Sum_probs=494.7

Q ss_pred             EeecCCCceEEEEEcCCCcEEEEecCCCCee-EEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCC
Q 001362          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH  418 (1092)
Q Consensus       340 v~~spdg~~llasg~~d~~v~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~  418 (1092)
                      ++||++|+ +|++... ..|.+-|+.+++.. ...                  -......+++++.+||+++|++++..+
T Consensus        25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s~------------------~~ed~d~ita~~l~~d~~~L~~a~rs~   84 (775)
T KOG0319|consen   25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPSG------------------SNEDEDEITALALTPDEEVLVTASRSQ   84 (775)
T ss_pred             eeECCCCC-EEEEecC-ceEEEEEccCCceecccC------------------CccchhhhheeeecCCccEEEEeeccc
Confidence            89999999 6777654 45999999999873 211                  223567899999999999999999999


Q ss_pred             EEEEEEccCCCcccceEEEcc-cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccC
Q 001362          419 IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE  497 (1092)
Q Consensus       419 ~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  497 (1092)
                      .+++|++.+|+.++   .++. |++||.-++|+|.|.  ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus        85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~  159 (775)
T KOG0319|consen   85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW  159 (775)
T ss_pred             eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence            99999999998877   5566 999999999999997  89999999999999999999999999999999999999998


Q ss_pred             CccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc
Q 001362          498 NIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL  576 (1092)
Q Consensus       498 ~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~  576 (1092)
                      +-..|++|..|+++++||+..... ...+..|...|++++|++|+..+++++.    +..+.+||..+-+..++++..+ 
T Consensus       160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye-  234 (775)
T KOG0319|consen  160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE-  234 (775)
T ss_pred             chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence            888999999999999999996555 6788889999999999999999999987    6679999998877777776644 


Q ss_pred             cCCceEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001362          577 QHNSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       577 ~~~~v~~~~~~p~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                         .+.++.+-++     +.+++++|.+|.+++||.+++++........ ...+..+...+....++..+.|..+.++|.
T Consensus       235 ---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~  310 (775)
T KOG0319|consen  235 ---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDE  310 (775)
T ss_pred             ---heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEc
Confidence               6777778777     7799999999999999999998877665443 233666666666677778888999999999


Q ss_pred             CCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCc
Q 001362          652 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK  731 (1092)
Q Consensus       652 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~  731 (1092)
                      ++.+....+-|..+.|..+.|-                     .|+.+.++.++..+.+|+++..   ...|..+    .
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~l---------------------G~e~~~laVATNs~~lr~y~~~---~~~c~ii----~  362 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFL---------------------GPEESHLAVATNSPELRLYTLP---TSYCQII----P  362 (775)
T ss_pred             cccEEehhhcCCchhheeeeec---------------------CCccceEEEEeCCCceEEEecC---CCceEEE----e
Confidence            9999999999999999988886                     5788999999999999999755   2334422    4


Q ss_pred             cccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001362          732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  811 (1092)
Q Consensus       732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s  811 (1092)
                      +|...|.++....+|-.+++++.|..+++|.++.+..                      .....-...+|.+.|.+++++
T Consensus       363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~----------------------~~~~~a~~~gH~~svgava~~  420 (775)
T KOG0319|consen  363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS----------------------KSLCVAQANGHTNSVGAVAGS  420 (775)
T ss_pred             CchhheeeeeecccCcEEEEecCCceEEEEEecCCcc----------------------hhhhhhhhcccccccceeeec
Confidence            6999999999888899999999999999999843211                      000001122599999999998


Q ss_pred             cCC-CEEEEEe-CCeEEEEEcCCcee---------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeE
Q 001362          812 KND-AYLFSAS-GGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  880 (1092)
Q Consensus       812 ~dg-~~l~~~s-dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~  880 (1092)
                      ..+ .++++++ |+++++|++...+.         ..+...|...|+|++++| +++++|||+.|++.+||+++......
T Consensus       421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~  499 (775)
T KOG0319|consen  421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLG  499 (775)
T ss_pred             ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEE
Confidence            766 5777777 89999999976221         112356899999999999 89999999999999999999999999


Q ss_pred             eeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcE
Q 001362          881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL  959 (1092)
Q Consensus       881 ~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i  959 (1092)
                      +|.||...|.++.|+|..+.++|+|.|++|+||.+++.     .++++++||..   .|..+.|-.+|+.|++ +.||-+
T Consensus       500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-----SClkT~eGH~~---aVlra~F~~~~~qliS~~adGli  571 (775)
T KOG0319|consen  500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-----SCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLI  571 (775)
T ss_pred             EeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-----eeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcE
Confidence            99999999999999999999999999999999999994     48999999987   8999999999999998 799999


Q ss_pred             EEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001362          960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus       960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
                      ++|++.+++|... +.+|..+|+++.-++++.+++||+.||.|.+|.=.+
T Consensus       572 KlWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  572 KLWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             EEEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            9999999999998 779999999999999999999999999999996444

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.8e-56  Score=476.08  Aligned_cols=586  Identities=13%  Similarity=0.180  Sum_probs=478.1

Q ss_pred             CCcCCCCCCCchhhhcccccCCccccCCCcce-e-eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEE
Q 001362          295 KNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV-A-QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI  372 (1092)
Q Consensus       295 ~~~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~-~-~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~  372 (1092)
                      |.-..|+|++..+...+.... ..++.-+... + ..-.+-.+.+++++.+||++ .|++++...-+++|++.+|+.++.
T Consensus        22 GG~~~~s~nG~~L~t~~~d~V-i~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs   99 (775)
T KOG0319|consen   22 GGPVAWSSNGQHLYTACGDRV-IIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS   99 (775)
T ss_pred             CCceeECCCCCEEEEecCceE-EEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh
Confidence            345788888888777665410 0111112222 1 12234567999999999998 688889999999999999988764


Q ss_pred             eeeeeeecccccceeeEeeecC-CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec
Q 001362          373 RNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA  451 (1092)
Q Consensus       373 ~~~~~~d~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~  451 (1092)
                                         ++. |++||.-++|+|.|.+||+|+.|+.|+|||+..+.+..   .|+||.+.|.++.|.|
T Consensus       100 -------------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~  157 (775)
T KOG0319|consen  100 -------------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHP  157 (775)
T ss_pred             -------------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCC
Confidence                               444 99999999999999999999999999999999986655   7999999999999999


Q ss_pred             CCCcEEEEEEeCCCcEEEEECCCCce-eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC
Q 001362          452 PCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL  530 (1092)
Q Consensus       452 d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  530 (1092)
                      +-.+..|++|+.|+++++||+.+... +..+..|...|+++++.+  |+..+++++.|..+.+||+...+........ .
T Consensus       158 ~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e  234 (775)
T KOG0319|consen  158 HWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-E  234 (775)
T ss_pred             ccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechh-h
Confidence            98766799999999999999996654 888999999999999954  6789999999999999999655554444332 2


Q ss_pred             ceEEEEEccC-----CCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001362          531 GCTRMAYSAN-----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW  605 (1092)
Q Consensus       531 ~i~~~~~s~d-----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iw  605 (1092)
                      .+.++.+-++     |.+++++|.    ++.+++||..++++........  ...+..+...+....+++.+.|..+.++
T Consensus       235 ~~E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQnl~l~  308 (775)
T KOG0319|consen  235 SLESVVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQNLFLY  308 (775)
T ss_pred             heeeEEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCC--chhhhcceeccccCceEEEEccceEEEE
Confidence            4566666666     668888875    6779999999998876665443  2336666677777788888899999999


Q ss_pred             ECCCCceEEEEeCCCCCCCCceEEEc-cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccccccc
Q 001362          606 DMNKVQLLTTIDAGGGLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA  684 (1092)
Q Consensus       606 d~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  684 (1092)
                      |.++.+....+-+.  ...|..|+|- |+.++||++++.+.+++|+..+..+. .+.+|.+.|.++...           
T Consensus       309 d~~~l~i~k~ivG~--ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~-----------  374 (775)
T KOG0319|consen  309 DEDELTIVKQIVGY--NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVW-----------  374 (775)
T ss_pred             EccccEEehhhcCC--chhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeec-----------
Confidence            99999988887754  3468888875 68899999999999999998887666 889999999988843           


Q ss_pred             CCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCc-EEEEeecCCeeEEEee
Q 001362          685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRW  763 (1092)
Q Consensus       685 ~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~lw~~  763 (1092)
                                 ..|-++++++.|.++++|.++.+..  .........+|.+.|.+++++..+. .+++++.|+++++|++
T Consensus       375 -----------~~g~llat~sKD~svilWr~~~~~~--~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l  441 (775)
T KOG0319|consen  375 -----------SSGDLLATGSKDKSVILWRLNNNCS--KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL  441 (775)
T ss_pred             -----------ccCcEEEEecCCceEEEEEecCCcc--hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence                       4567899999999999999842221  1112223367999999999987664 5678889999999999


Q ss_pred             cCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCC
Q 001362          764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP  842 (1092)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~  842 (1092)
                      +..+....        +.         ..........|...|.|++++|+.+++|+|+ |.+.+||+++.+....++.+|
T Consensus       442 ~~s~~~~~--------~~---------~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH  504 (775)
T KOG0319|consen  442 PKSKETAF--------PI---------VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH  504 (775)
T ss_pred             CCcccccc--------cc---------eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC
Confidence            87321100        11         1111122335999999999999999999999 799999999999999999999


Q ss_pred             CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001362          843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT  922 (1092)
Q Consensus       843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~  922 (1092)
                      ...|.++.|+| ..+.+||+|.|++|+||.+.+..|+++|.||+..|..+.|-.+|+.|+|++.||.|++|++++++   
T Consensus       505 ~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e---  580 (775)
T KOG0319|consen  505 TRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE---  580 (775)
T ss_pred             ccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh---
Confidence            99999999999 88899999999999999999999999999999999999999999999999999999999999966   


Q ss_pred             eeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCC
Q 001362          923 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE  966 (1092)
Q Consensus       923 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~  966 (1092)
                        +..+++.|..   .|.+++.+|.+.++++ +.|+.|.+|.-.+
T Consensus       581 --C~~tlD~H~D---rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  581 --CEMTLDAHND---RVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             --hhhhhhhccc---eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence              7888888886   8999999999999998 6899999996443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.5e-52  Score=427.03  Aligned_cols=575  Identities=15%  Similarity=0.183  Sum_probs=462.2

Q ss_pred             EEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCC
Q 001362          339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH  418 (1092)
Q Consensus       339 ~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~  418 (1092)
                      -+.-.|.|+.+|.+.+  ..|.+-++++......                   +++|...++-..|||.|-|+|+|...|
T Consensus        23 ~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~i-------------------YtEH~~~vtVAkySPsG~yiASGD~sG   81 (603)
T KOG0318|consen   23 IIGGDPKGDNILYTNG--KSVIIRNIDNPASVDI-------------------YTEHAHQVTVAKYSPSGFYIASGDVSG   81 (603)
T ss_pred             EeccCCCCCeEEEeCC--CEEEEEECCCccceee-------------------eccccceeEEEEeCCCceEEeecCCcC
Confidence            3455688887887755  6788888887765433                   778999999999999999999999999


Q ss_pred             EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEE-eCCCcEEEEECCCCceeEEEecCCcCeEEEeecccC
Q 001362          419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE  497 (1092)
Q Consensus       419 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  497 (1092)
                      +|+|||....+.+- ..++..-.++|..++|++|+++ ++++| +.++..+++-+++|..+..+.||...|+++.|-|+.
T Consensus        82 ~vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsR  159 (603)
T KOG0318|consen   82 KVRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSR  159 (603)
T ss_pred             cEEEEeccCcceee-eeeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCC
Confidence            99999998743322 2256678899999999999995 23333 344445555556888999999999999999997764


Q ss_pred             CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc
Q 001362          498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ  577 (1092)
Q Consensus       498 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~  577 (1092)
                      . -++++|+.|++|.+|+=...+-...+..|..-|.++.|+|||.++++++.    ++.+++||-.+|+.+..+.....|
T Consensus       160 P-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~aH  234 (603)
T KOG0318|consen  160 P-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDAH  234 (603)
T ss_pred             c-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCCc
Confidence            3 58999999999999987777777788888889999999999999999987    666999999999999999965556


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCC-CCceEEEccCCCEEEEEeCCCeEEEEECCCCce
Q 001362          578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP-ENPRICFNKNGTLLAVIANENRIKILETPESNS  656 (1092)
Q Consensus       578 ~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~  656 (1092)
                      .+.|.+++|+||+.++++++.|.+++|||+.+.+++.++....... ....+.|.  ...|++.+.+|.|.+++......
T Consensus       235 kGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~  312 (603)
T KOG0318|consen  235 KGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSV  312 (603)
T ss_pred             cccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCCh
Confidence            6999999999999999999999999999999999999988764421 12234444  67899999999999999999999


Q ss_pred             eeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCcccccc
Q 001362          657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK  736 (1092)
Q Consensus       657 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~  736 (1092)
                      +..+.+|...|++++.+                      +|++++.+++.||.|.-|+...+...     .+...+|...
T Consensus       313 ~~~i~GHnK~ITaLtv~----------------------~d~~~i~SgsyDG~I~~W~~~~g~~~-----~~~g~~h~nq  365 (603)
T KOG0318|consen  313 LKVISGHNKSITALTVS----------------------PDGKTIYSGSYDGHINSWDSGSGTSD-----RLAGKGHTNQ  365 (603)
T ss_pred             hheecccccceeEEEEc----------------------CCCCEEEeeccCceEEEEecCCcccc-----ccccccccce
Confidence            99999999999999996                      78899999999999999998754433     2333459999


Q ss_pred             EEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCE
Q 001362          737 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY  816 (1092)
Q Consensus       737 i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~  816 (1092)
                      |.+++.+..+. +++.+.|.++++.++..+......                  .  .+     -.....+++..+++.+
T Consensus       366 I~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~------------------~--~~-----lg~QP~~lav~~d~~~  419 (603)
T KOG0318|consen  366 IKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE------------------V--VK-----LGSQPKGLAVLSDGGT  419 (603)
T ss_pred             EEEEeecCCCc-EEEEecCCeEEEEecccCcccccc------------------e--ee-----cCCCceeEEEcCCCCE
Confidence            99999988776 788888889988776543221110                  0  11     1223348899999888


Q ss_pred             EEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee--eEeeccccCCeEEEEE
Q 001362          817 LFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGHSKRVTGLVF  894 (1092)
Q Consensus       817 l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~  894 (1092)
                      ++.+.++.|.+..-.++  +.... ..-...++|++| ++..+|+|+.||.|+||.+..+..  ...+..|.++|+++++
T Consensus       420 avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vay  495 (603)
T KOG0318|consen  420 AVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAY  495 (603)
T ss_pred             EEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEE
Confidence            88888766666552222  12222 334678999999 999999999999999999987653  3456679999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeee
Q 001362          895 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW  973 (1092)
Q Consensus       895 spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~  973 (1092)
                      |||+.+||++...+.+.+||+.+++.... ..   .-|.   ..|.+++|||++.++|+ +-|..|.||++.........
T Consensus       496 Spd~~yla~~Da~rkvv~yd~~s~~~~~~-~w---~FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i  568 (603)
T KOG0318|consen  496 SPDGAYLAAGDASRKVVLYDVASREVKTN-RW---AFHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII  568 (603)
T ss_pred             CCCCcEEEEeccCCcEEEEEcccCceecc-ee---eeee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhheEe
Confidence            99999999999999999999999764221 11   1122   37999999999999999 57899999999887766666


Q ss_pred             ccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001362          974 FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       974 ~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
                      ..+|...|+.+.|-. ...|++.+.|..|++|++.
T Consensus       569 knAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  569 KNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             ccccccCceeEEEec-CceEEeccCcceeEEeccc
Confidence            788988899999974 5678999999999999875

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.7e-51  Score=435.38  Aligned_cols=612  Identities=17%  Similarity=0.285  Sum_probs=460.5

Q ss_pred             cCCCCCCCchhhhcccccCCccccCCCcceeeecc-cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeee
Q 001362          297 IPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF  375 (1092)
Q Consensus       297 ~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~  375 (1092)
                      -+.|+|++..+...-  .+...+.++.+....+|. .+...|++++.||+|. +|++....|...+-++.....++.+++
T Consensus        19 nl~ft~dG~sviSPv--GNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~f   95 (893)
T KOG0291|consen   19 NLVFTKDGNSVISPV--GNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFNF   95 (893)
T ss_pred             cEEECCCCCEEEecc--CCEEEEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEee
Confidence            466777644332211  123345555555555554 4556999999999998 666667889999999888877765443


Q ss_pred             eeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCc-----ccceEEEcccccceeEEEEe
Q 001362          376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFS  450 (1092)
Q Consensus       376 ~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~~~~s  450 (1092)
                                          +.+|.|+.|||||+++|+|..+ .+.||.......     .....++.+|...|.++.|+
T Consensus        96 --------------------k~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws  154 (893)
T KOG0291|consen   96 --------------------KRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWS  154 (893)
T ss_pred             --------------------cCccceEEECCCCcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCccceeEEEec
Confidence                                3789999999999999998654 599999764322     22344677899999999999


Q ss_pred             cCCCcEEEEEEeCCCcEEEEECCCCce--eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001362          451 APCKQISVITCGDDKTIKVWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP  528 (1092)
Q Consensus       451 ~d~~~l~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  528 (1092)
                      .|++  ++++|+.|.++++|+++..+-  .+.+.+|.+.|.++-|.  .|...+++.+.||.+.+|..+..-.... ...
T Consensus       155 ~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~-~~~  229 (893)
T KOG0291|consen  155 DDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELD-KAE  229 (893)
T ss_pred             cCCc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEec--cCcceEEEEecCceEEEEEecCCCcccc-ccc
Confidence            9999  899999999999999887665  57788999999988884  4667899999999999998764311110 000


Q ss_pred             CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001362          529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  608 (1092)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~  608 (1092)
                      .        ..+|.--.-.-.++++...-..|-.    ..+.+-..  ....|++.+|++..+.+++|-..|...+|.+.
T Consensus       230 k--------d~eg~~d~~~~~~~Eek~~~~~~~k----~~k~~ln~--~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP  295 (893)
T KOG0291|consen  230 K--------DEEGSDDEEMDEDGEEKTHKIFWYK----TKKHYLNQ--NSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP  295 (893)
T ss_pred             c--------cccccccccccccchhhhcceEEEE----EEeeeecc--cccceeeeeccCCceEEEEEecCCeeEEEecC
Confidence            0        0011000000000010000112211    00111111  12579999999999999999999999999999


Q ss_pred             CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-CeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCc
Q 001362          609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS  687 (1092)
Q Consensus       609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  687 (1092)
                      ...+++.+.....  .|..++|+..|.++|.|+.. |.+.||+......+                              
T Consensus       296 ~f~lih~LSis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV------------------------------  343 (893)
T KOG0291|consen  296 DFNLIHSLSISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV------------------------------  343 (893)
T ss_pred             CceEEEEeecccc--eeeEEEecccCCEEEEcCCccceEEEEEeecccee------------------------------
Confidence            9999999986643  58999999999999999875 78889987754322                              


Q ss_pred             eeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCC
Q 001362          688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND  767 (1092)
Q Consensus       688 ~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~  767 (1092)
                                                              +...+|...+.+++++|||+++++|+.||.|++|+     
T Consensus       344 ----------------------------------------lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn-----  378 (893)
T KOG0291|consen  344 ----------------------------------------LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN-----  378 (893)
T ss_pred             ----------------------------------------eeccccccceeeEEECCCCcEEEeccCCCcEEEEe-----
Confidence                                                    23345788899999999999999999999888876     


Q ss_pred             cCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCC-C
Q 001362          768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP-T  845 (1092)
Q Consensus       768 ~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~-~  845 (1092)
                                       ..+|.|+.+++    +|...|+.+.|+..|+.+++++ ||+|+.||+...+..+++..+.. .
T Consensus       379 -----------------~~SgfC~vTFt----eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Q  437 (893)
T KOG0291|consen  379 -----------------TQSGFCFVTFT----EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ  437 (893)
T ss_pred             -----------------ccCceEEEEec----cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCcee
Confidence                             45677777766    3999999999999999999999 99999999999999999986653 5


Q ss_pred             eEEEEEcCCCCCEEEEEeCCC-cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001362          846 ATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR  924 (1092)
Q Consensus       846 i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~  924 (1092)
                      ..|++..| .|.++..|+.|. .|++|++++|+.+..+.||.++|.+++|+|++..|+|+|.|++|++||+-..... ..
T Consensus       438 fscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-vE  515 (893)
T KOG0291|consen  438 FSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-VE  515 (893)
T ss_pred             eeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-ee
Confidence            68999999 899999999887 8999999999999999999999999999999999999999999999999764211 11


Q ss_pred             eeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeecc-------------------CCCCCEEEE
Q 001362          925 SLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP-------------------ISSVPISQA  984 (1092)
Q Consensus       925 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~-------------------~h~~~v~~l  984 (1092)
                      .++..       ..+..++|+|||+.||+ .-||.|.+||+..+..+..+-.                   ......+.+
T Consensus       516 tl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti  588 (893)
T KOG0291|consen  516 TLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTI  588 (893)
T ss_pred             eEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEE
Confidence            22222       14889999999999999 6899999999987655532110                   125788999


Q ss_pred             EEecCCCEEEEEECCCcEEEEEcCCCceEEeecccccc--------------------------------------CCC-
Q 001362          985 TFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL--------------------------------------RPT- 1025 (1092)
Q Consensus       985 ~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------------~~~- 1025 (1092)
                      ++|+||.+|++||....|++|++.++.++.+|......                                      |.. 
T Consensus       589 ~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~  668 (893)
T KOG0291|consen  589 CYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQ  668 (893)
T ss_pred             EEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccc
Confidence            99999999999999999999999999998888621111                                      110 


Q ss_pred             ---CccC----cccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001362         1026 ---TSCL----HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus      1026 ---~~~~----~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
                         ....    .|....+.|+|. ++-+|++++.|. .||.+
T Consensus       669 ~gdlssRr~rpeIrv~sv~fsPt-graFAaatTEGl-~IYsl  708 (893)
T KOG0291|consen  669 RGDLSSRRFRPEIRVTSVQFSPT-GRAFAAATTEGL-LIYSL  708 (893)
T ss_pred             cCCccccccCceEEEEEEEECCC-cCeeeeecccce-EEEec
Confidence               0111    466788999994 888999999885 33443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.3e-49  Score=407.13  Aligned_cols=542  Identities=12%  Similarity=0.201  Sum_probs=435.4

Q ss_pred             eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001362          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      ....+.+|...++-..|||.|- ++|+|...|.|+|||....+.+...+|++                 -.++|..++|+
T Consensus        51 ~~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~v-----------------~aG~I~Di~Wd  112 (603)
T KOG0318|consen   51 SVDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQV-----------------LAGPIKDISWD  112 (603)
T ss_pred             ceeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeeee-----------------cccccccceeC
Confidence            3567789999999999999996 79999999999999998866665545442                 45799999999


Q ss_pred             CCCCEEEEEeC--CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001362          406 PDGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1092)
Q Consensus       406 pdg~~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  483 (1092)
                      +|+++|++.+.  ++..+++-+++|..+.   ++.||...|++++|-|.... .++||+.|++|.+|+-.--+...++..
T Consensus       113 ~ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~  188 (603)
T KOG0318|consen  113 FDSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFRE  188 (603)
T ss_pred             CCCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccc
Confidence            99999988754  3334444444554455   78899999999999997665 899999999999998666677778889


Q ss_pred             CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001362          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                      |...|+++.|+|  ||.++++++.||++.+||=.+++....+.   .|.+.|.+++|+||++.+++++.    +..+++|
T Consensus       189 HskFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIW  262 (603)
T KOG0318|consen  189 HSKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIW  262 (603)
T ss_pred             cccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEE
Confidence            999999999955  78999999999999999999999888887   78899999999999999999987    5669999


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001362          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI  640 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  640 (1092)
                      |..+.++++++.....-.+....+.|.  +..|++.+.+|+|.+++...+..+..+.+|.  ..|+++..+|++++|.+|
T Consensus       263 dVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~~~i~Sg  338 (603)
T KOG0318|consen  263 DVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDGKTIYSG  338 (603)
T ss_pred             EeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCCCEEEee
Confidence            999999999987654222344445565  5689999999999999999999888888764  479999999999999999


Q ss_pred             eCCCeEEEEECCCCceeeec-ccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc
Q 001362          641 ANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  719 (1092)
Q Consensus       641 ~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~  719 (1092)
                      +.||.|.-|+...+..-... ++|...|.+++.+                       +...+++.+.|.++++.++....
T Consensus       339 syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-----------------------~~~~~~t~g~Dd~l~~~~~~~~~  395 (603)
T KOG0318|consen  339 SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-----------------------ESGELFTIGWDDTLRVISLKDNG  395 (603)
T ss_pred             ccCceEEEEecCCccccccccccccceEEEEeec-----------------------CCCcEEEEecCCeEEEEecccCc
Confidence            99999999999988665544 6788888888776                       23567888999999998764332


Q ss_pred             CccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCC
Q 001362          720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS  799 (1092)
Q Consensus       720 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~  799 (1092)
                      ......+.+     .....+++..+++..++.+...+.+.+-+...                         +...     
T Consensus       396 ~t~~~~~~l-----g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-------------------------~~~~-----  440 (603)
T KOG0318|consen  396 YTKSEVVKL-----GSQPKGLAVLSDGGTAVVACISDIVLLQDQTK-------------------------VSSI-----  440 (603)
T ss_pred             ccccceeec-----CCCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------------ceee-----
Confidence            222221211     12233788888887666666555444422211                         1111     


Q ss_pred             CCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001362          800 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  876 (1092)
Q Consensus       800 ~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  876 (1092)
                      .-.....+++++|++..+++|+ |+.++||.+..+..  ...+..|.++|++++||| |+.+||+|...+.|.+||+.+.
T Consensus       441 ~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~  519 (603)
T KOG0318|consen  441 PIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASR  519 (603)
T ss_pred             ccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccC
Confidence            1345678999999999999998 79999999987553  334667999999999999 9999999999999999999998


Q ss_pred             eeeEe-eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe
Q 001362          877 EVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH  955 (1092)
Q Consensus       877 ~~~~~-l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~  955 (1092)
                      +.... +.-|+++|.+++|||+.+++||||-|-.|.||+++....    .+.....|..   .|..++|-.+...+-+|.
T Consensus       520 ~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~----~i~iknAH~~---gVn~v~wlde~tvvSsG~  592 (603)
T KOG0318|consen  520 EVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK----HIIIKNAHLG---GVNSVAWLDESTVVSSGQ  592 (603)
T ss_pred             ceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh----heEecccccc---CceeEEEecCceEEeccC
Confidence            76433 334999999999999999999999999999999997432    2444455554   599999999998888899


Q ss_pred             CCcEEEEEcC
Q 001362          956 ETHLAIYEAE  965 (1092)
Q Consensus       956 d~~i~lwd~~  965 (1092)
                      |..|++|++.
T Consensus       593 Da~iK~W~v~  602 (603)
T KOG0318|consen  593 DANIKVWNVT  602 (603)
T ss_pred             cceeEEeccc
Confidence            9999999874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-48  Score=416.41  Aligned_cols=575  Identities=16%  Similarity=0.188  Sum_probs=446.2

Q ss_pred             CceEEee-cCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          336 SPMSMDF-HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       336 ~V~~v~~-spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      .+..+.. +..|+++.+  +.-..|.+||+.+|+......                 .......|+|++-+||.-+||+|
T Consensus        23 N~~~~~~~~~~Gr~va~--~a~E~vn~WdlRtge~~~~l~-----------------~~~~k~evt~l~~~~d~l~lAVG   83 (888)
T KOG0306|consen   23 NINFVVKRSGKGRAVAV--SALEQVNIWDLRTGEIEKKLI-----------------LLKKKAEVTCLRSSDDILLLAVG   83 (888)
T ss_pred             ceeEEEeecCCCcEEEE--eccccEeEEeeecchhhhhhh-----------------hhcccceEEEeeccCCcceEEEE
Confidence            3443333 446874333  333689999999996554211                 22344689999999999999999


Q ss_pred             eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeec
Q 001362          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  494 (1092)
                      ..||.|+||+..++....   ++.||...|+++.|...|.  .|+|||.|+.|.+||+-...-+..+.||...|+..-|.
T Consensus        84 YaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~  158 (888)
T KOG0306|consen   84 YADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL  158 (888)
T ss_pred             ecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence            999999999999875444   7899999999999999999  89999999999999999988999999999999988885


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC---------
Q 001362          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG---------  565 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~---------  565 (1092)
                      .  +..++++.+.|+.|++||+.+..+..+...|.+.+..+++.+  +.+++++.    +..+.+|++...         
T Consensus       159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~  230 (888)
T KOG0306|consen  159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRY  230 (888)
T ss_pred             C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeeccccccccccc
Confidence            4  457999999999999999999999999999999999999988  67777765    444999988211         


Q ss_pred             ---eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE--------------EE-EeC---------
Q 001362          566 ---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--------------TT-IDA---------  618 (1092)
Q Consensus       566 ---~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~--------------~~-~~~---------  618 (1092)
                         +...++...  ..+....+...++++++++-+.|..+.+|.+.+.+.+              .. -..         
T Consensus       231 ~s~~~~G~~~rq--sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~  308 (888)
T KOG0306|consen  231 ISTKLRGTFIRQ--SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS  308 (888)
T ss_pred             ceeeccceeeec--cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence               011122221  1344556667788888999999999999988653211              00 000         


Q ss_pred             --------CCCCCCCceEEEccCCC---EEEEEeCCCeEEEEECCCCcee---------eecccccCceeeeeecCCCcc
Q 001362          619 --------GGGLPENPRICFNKNGT---LLAVIANENRIKILETPESNSV---------DAAGVLSDNLRKLSVNPISTV  678 (1092)
Q Consensus       619 --------~~~~~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~  678 (1092)
                              -.....+.++.+-|.++   .|+. -.++++.+|.++.....         ..+.+|...|.+++++.    
T Consensus       309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~----  383 (888)
T KOG0306|consen  309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS----  383 (888)
T ss_pred             HHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec----
Confidence                    00112356677776443   3333 56778888887753222         35568888999888873    


Q ss_pred             ccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCee
Q 001362          679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH  758 (1092)
Q Consensus       679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i  758 (1092)
                                        |...++++ ..+.+++|+..+..   |....     ..+.+.+..|-|.+++++.|..+|.+
T Consensus       384 ------------------d~~~~~Sg-a~~SikiWn~~t~k---ciRTi-----~~~y~l~~~Fvpgd~~Iv~G~k~Gel  436 (888)
T KOG0306|consen  384 ------------------DSILLASG-AGESIKIWNRDTLK---CIRTI-----TCGYILASKFVPGDRYIVLGTKNGEL  436 (888)
T ss_pred             ------------------Cceeeeec-CCCcEEEEEccCcc---eeEEe-----ccccEEEEEecCCCceEEEeccCCce
Confidence                              33334444 44789999977432   22111     33478889999999999999999999


Q ss_pred             EEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC-----
Q 001362          759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT-----  832 (1092)
Q Consensus       759 ~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~-----  832 (1092)
                      .+|++.....                      +-+  .+  .|.+.+.+++.+||++.+++++ |.+|++||..-     
T Consensus       437 ~vfdlaS~~l----------------------~Et--i~--AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~  490 (888)
T KOG0306|consen  437 QVFDLASASL----------------------VET--IR--AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP  490 (888)
T ss_pred             EEEEeehhhh----------------------hhh--hh--ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence            9999865421                      111  11  4999999999999999999998 89999999752     


Q ss_pred             ceeeEEec-------CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEe
Q 001362          833 FKTILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG  905 (1092)
Q Consensus       833 ~~~~~~~~-------~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s  905 (1092)
                      +...+.+.       .-...|.|+.+|| |+++||++--|.+|+||-+++-+..-.+.||.-||.|+..|||+++++|||
T Consensus       491 gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS  569 (888)
T KOG0306|consen  491 GTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS  569 (888)
T ss_pred             cccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc
Confidence            21111111       2456899999999 999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEE
Q 001362          906 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQA  984 (1092)
Q Consensus       906 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l  984 (1092)
                      .|+.|+||-++-|.     |.+.+-+|..   .|.++.|-|+..++.+ |.|+.|+-||....++++. +.+|...|+++
T Consensus       570 ADKnVKiWGLdFGD-----CHKS~fAHdD---Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~-L~~H~~ev~cL  640 (888)
T KOG0306|consen  570 ADKNVKIWGLDFGD-----CHKSFFAHDD---SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK-LDGHHSEVWCL  640 (888)
T ss_pred             CCCceEEeccccch-----hhhhhhcccC---ceeEEEEcccceeEEEecCcceEEeechhhhhhhee-eccchheeeee
Confidence            99999999999866     5556666655   7999999999888777 7999999999999999988 67899999999


Q ss_pred             EEecCCCEEEEEECCCcEEEEEcCCCce
Q 001362          985 TFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus       985 ~fs~dg~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
                      +.+|+|.+++++|.|.+|++|.-....+
T Consensus       641 av~~~G~~vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  641 AVSPNGSFVVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             EEcCCCCeEEeccCCceeEeeeccCcce
Confidence            9999999999999999999999776443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1e-48  Score=416.66  Aligned_cols=505  Identities=14%  Similarity=0.230  Sum_probs=398.4

Q ss_pred             CCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001362          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       333 h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      -+.+|+|+.-+||.- +||+|..||.|+||+..++..+.+                   +.||...|+++.|...|..||
T Consensus        64 ~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rla  123 (888)
T KOG0306|consen   64 KKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLA  123 (888)
T ss_pred             ccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEe
Confidence            345899999999986 899999999999999998876654                   789999999999999999999


Q ss_pred             EEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEe
Q 001362          413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC  492 (1092)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  492 (1092)
                      +||.|+.|.+||+-....+.   .+.||...|+.+-|..+.+  ++++.+.|+.|++||+++..|..+.-.|.+.+..++
T Consensus       124 SGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~  198 (888)
T KOG0306|consen  124 SGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV  198 (888)
T ss_pred             ecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence            99999999999998754443   6889999999999998777  899999999999999999999999999999999999


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCce-------------EEecCCCCceEEEEEccCCCEEEEEecCC--------
Q 001362          493 PHAKENIHFIFSISVDGKIKAWLYDSLGAR-------------VDYDAPGLGCTRMAYSANGRRLFSCGTSK--------  551 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-------------~~~~~~~~~i~~~~~s~dg~~l~~~~~~~--------  551 (1092)
                      +.+    ..+++++.|+.+++|++....-.             .......+....++..++++++++-+.+.        
T Consensus       199 ~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~  274 (888)
T KOG0306|consen  199 LDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR  274 (888)
T ss_pred             Eec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence            954    68999999999999998211000             00011111222333334444444333211        


Q ss_pred             ------------------------------------------------------------------CCceeEEEEeCCC-
Q 001362          552 ------------------------------------------------------------------EGESFLVEWNESE-  564 (1092)
Q Consensus       552 ------------------------------------------------------------------~~~~~i~iwd~~~-  564 (1092)
                                                                                        -.++.+..+.+.. 
T Consensus       275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s  354 (888)
T KOG0306|consen  275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENS  354 (888)
T ss_pred             CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccC
Confidence                                                                              0022233333322 


Q ss_pred             CeE--------EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCE
Q 001362          565 GAI--------KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL  636 (1092)
Q Consensus       565 ~~~--------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~  636 (1092)
                      +..        -..+.||.   ..|.+++++.+...+++|+ .+.+.+|+..+.+++.++...    .+.+..|-|.+++
T Consensus       355 ~~~~p~~~~~~~i~~~GHR---~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~  426 (888)
T KOG0306|consen  355 GKTSPEADRTSNIEIGGHR---SDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG----YILASKFVPGDRY  426 (888)
T ss_pred             CCCCccccccceeeeccch---hheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc----cEEEEEecCCCce
Confidence            111        12344555   8899999998876555554 578999999999999999754    5788999999999


Q ss_pred             EEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001362          637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~  716 (1092)
                      +++|...|.+.+||+.....+...+.|.+.++.++..                      ||++..++++.|.+|++|+..
T Consensus       427 Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~----------------------pD~~g~vT~saDktVkfWdf~  484 (888)
T KOG0306|consen  427 IVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS----------------------PDNKGFVTGSADKTVKFWDFK  484 (888)
T ss_pred             EEEeccCCceEEEEeehhhhhhhhhccccceeeeeec----------------------CCCCceEEecCCcEEEEEeEE
Confidence            9999999999999999988888887777777766664                      566666777777777777644


Q ss_pred             cccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecC
Q 001362          717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT  796 (1092)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l  796 (1092)
                      ...                       +-.|.      ....+.+                         .   ...+.  
T Consensus       485 l~~-----------------------~~~gt------~~k~lsl-------------------------~---~~rtL--  505 (888)
T KOG0306|consen  485 LVV-----------------------SVPGT------QKKVLSL-------------------------K---HTRTL--  505 (888)
T ss_pred             EEe-----------------------ccCcc------cceeeee-------------------------c---cceEE--
Confidence            110                       00000      0000000                         0   01111  


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC
Q 001362          797 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS  875 (1092)
Q Consensus       797 ~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~  875 (1092)
                         .-...|.|+.+||||++||++- |++++||-+.+.+....+.+|.-+|.|+.+|| |+++++||+.|++|+||-++-
T Consensus       506 ---el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdF  581 (888)
T KOG0306|consen  506 ---ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDF  581 (888)
T ss_pred             ---eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEecccc
Confidence               1467899999999999999997 99999999999999999999999999999999 999999999999999999999


Q ss_pred             ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-E
Q 001362          876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V  954 (1092)
Q Consensus       876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~  954 (1092)
                      |.|.+.+-+|.+.|.++.|.|+...+.++|.|+.|+-||-+.     ...++.+.+|..   .|.+++.+|+|.++++ +
T Consensus       582 GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k-----Fe~iq~L~~H~~---ev~cLav~~~G~~vvs~s  653 (888)
T KOG0306|consen  582 GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK-----FEEIQKLDGHHS---EVWCLAVSPNGSFVVSSS  653 (888)
T ss_pred             chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh-----hhhheeeccchh---eeeeeEEcCCCCeEEecc
Confidence            999999999999999999999999999999999999999887     447888888886   8999999999999999 6


Q ss_pred             eCCcEEEEEcCCc
Q 001362          955 HETHLAIYEAEEL  967 (1092)
Q Consensus       955 ~d~~i~lwd~~~~  967 (1092)
                      .|.+|++|.-..-
T Consensus       654 hD~sIRlwE~tde  666 (888)
T KOG0306|consen  654 HDKSIRLWERTDE  666 (888)
T ss_pred             CCceeEeeeccCc
Confidence            8899999987653

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-50  Score=397.27  Aligned_cols=333  Identities=20%  Similarity=0.320  Sum_probs=304.8

Q ss_pred             cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ..|...+.||.+.|.|++|+|+|+ .||+|+.|.++++||+.+..+.++                   .++|...|.|++
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcva  164 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVA  164 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEE
Confidence            467788999999999999999998 599999999999999999988876                   889999999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec-----CCCcEEEEEEeCCCcEEEEECCCCcee
Q 001362          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-----d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      |||||+.||+|+.||+|++||.++|+++..  .+.+|...|++++|-|     ..+  +|++++.||+|+|||+..+.++
T Consensus       165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~  240 (480)
T KOG0271|consen  165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV  240 (480)
T ss_pred             ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence            999999999999999999999999987765  5889999999999965     556  7999999999999999999999


Q ss_pred             EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-----------CCC-----
Q 001362          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-----------NGR-----  542 (1092)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-----------dg~-----  542 (1092)
                      ..+.+|+.+|+|++|-  + ..++++|+.|++|++|+...+.....+.+|.+.|+.++.+.           .++     
T Consensus       241 ~~lsgHT~~VTCvrwG--G-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~  317 (480)
T KOG0271|consen  241 RTLSGHTASVTCVRWG--G-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF  317 (480)
T ss_pred             EEeccCccceEEEEEc--C-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence            9999999999999983  2 35999999999999999999889999999999999998872           233     


Q ss_pred             --------------------EEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc
Q 001362          543 --------------------RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV  601 (1092)
Q Consensus       543 --------------------~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~  601 (1092)
                                          .|++++.    +.++++|+... .+++..+.+|.   ..|+.+.|+||++++++++.|..
T Consensus       318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkS  390 (480)
T KOG0271|consen  318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKS  390 (480)
T ss_pred             HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccc
Confidence                                4888875    66799999864 45788889998   89999999999999999999999


Q ss_pred             EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccc
Q 001362          602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA  681 (1092)
Q Consensus       602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  681 (1092)
                      |++||..+|+.+.++.+|  ...|+.++|+.|.++|++|+.|.++++|++.+.+....+.+|.+.|.++.++        
T Consensus       391 VkLW~g~tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws--------  460 (480)
T KOG0271|consen  391 VKLWDGRTGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS--------  460 (480)
T ss_pred             eeeeeCCCcchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec--------
Confidence            999999999999999866  5679999999999999999999999999999999999999999999999996        


Q ss_pred             cccCCceeecCCCCCCCccceeeccccccceec
Q 001362          682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEK  714 (1092)
Q Consensus       682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~  714 (1092)
                                    |||..+++|+.|..+++|.
T Consensus       461 --------------pDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  461 --------------PDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             --------------CCCceeecCCCceEEEeec
Confidence                          8899999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-49  Score=390.49  Aligned_cols=367  Identities=20%  Similarity=0.295  Sum_probs=296.7

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.||.++|.|++|+|+|++||+|+.|.++++||+.+.....   +.++|...|.|++|+|||+  .|++|+.||+|++||
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD  185 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence            77999999999999999999999999999999999986555   8899999999999999999  899999999999999


Q ss_pred             CCCCcee-EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001362          472 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       472 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      .++|+++ ..+.+|..+|++++|.|-                                       -..|..++|++++. 
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~---------------------------------------hl~p~~r~las~sk-  225 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPL---------------------------------------HLVPPCRRLASSSK-  225 (480)
T ss_pred             CCCCCcccccccCcccceeEEeeccc---------------------------------------ccCCCccceecccC-
Confidence            9999876 678999999999998652                                       23466667777765 


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001362          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                         ++.++|||...+.++..+.+|.   .+|+|+.|..+| ++++|+.|++|++|+...|.+...+.+|.+  .|+.++.
T Consensus       226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal  296 (480)
T KOG0271|consen  226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL  296 (480)
T ss_pred             ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence               5558888888899999999999   999999998765 899999999999999999999999998866  5888888


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccccc
Q 001362          631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  710 (1092)
Q Consensus       631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i  710 (1092)
                      +-+- .|-+|..|.+        +.......    .....+.....                                  
T Consensus       297 sTdy-~LRtgaf~~t--------~~~~~~~s----e~~~~Al~rY~----------------------------------  329 (480)
T KOG0271|consen  297 STDY-VLRTGAFDHT--------GRKPKSFS----EEQKKALERYE----------------------------------  329 (480)
T ss_pred             cchh-hhhccccccc--------cccCCChH----HHHHHHHHHHH----------------------------------
Confidence            7542 2233333221        11100000    00000010000                                  


Q ss_pred             ceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCc
Q 001362          711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ  790 (1092)
Q Consensus       711 ~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~  790 (1092)
                                                   ...-..+.++++++.|.++.+|+-....                     ++
T Consensus       330 -----------------------------~~~~~~~erlVSgsDd~tlflW~p~~~k---------------------kp  359 (480)
T KOG0271|consen  330 -----------------------------AVLKDSGERLVSGSDDFTLFLWNPFKSK---------------------KP  359 (480)
T ss_pred             -----------------------------HhhccCcceeEEecCCceEEEecccccc---------------------cc
Confidence                                         0001123456777777777776532211                     00


Q ss_pred             eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 001362          791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL  869 (1092)
Q Consensus       791 ~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~  869 (1092)
                      +.  .+.  +|..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-..|..++|+. |.++|++|+.|.+++
T Consensus       360 i~--rmt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLK  434 (480)
T KOG0271|consen  360 IT--RMT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLK  434 (480)
T ss_pred             hh--hhh--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEE
Confidence            11  111  4899999999999999999999 89999999999999999999999999999999 999999999999999


Q ss_pred             EEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001362          870 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1092)
Q Consensus       870 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd  914 (1092)
                      +|++.+.++...|.||.+.|.++.|+|||..+++++.|+.+++|.
T Consensus       435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999999999999999999999999995

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.9e-45  Score=387.66  Aligned_cols=539  Identities=13%  Similarity=0.169  Sum_probs=430.8

Q ss_pred             EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001362          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      .+.|++||..+++-..+ .|.++|+...+....   .-.+...|.+++.||+|.  ++++...+|...+-++.....++.
T Consensus        19 nl~ft~dG~sviSPvGN-rvsv~dLknN~S~Tl---~~e~~~NI~~ialSp~g~--lllavdE~g~~~lvs~~~r~Vlh~   92 (893)
T KOG0291|consen   19 NLVFTKDGNSVISPVGN-RVSVFDLKNNKSYTL---PLETRYNITRIALSPDGT--LLLAVDERGRALLVSLLSRSVLHR   92 (893)
T ss_pred             cEEECCCCCEEEeccCC-EEEEEEccCCcceeE---EeecCCceEEEEeCCCce--EEEEEcCCCcEEEEecccceeeEE
Confidence            48899999999987555 499999998754432   225777899999999999  888899999999999888888888


Q ss_pred             EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--------eEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001362          481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      +. ...+|.++.|+|  ||.+++.+ ..+.+.+|.......        ..++.+|-..|.++.|+.|.+++++++.   
T Consensus        93 f~-fk~~v~~i~fSP--ng~~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr---  165 (893)
T KOG0291|consen   93 FN-FKRGVGAIKFSP--NGKFFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR---  165 (893)
T ss_pred             Ee-ecCccceEEECC--CCcEEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---
Confidence            75 678899999955  66666555 456899997654332        2356677789999999999999999976   


Q ss_pred             CceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC---------------------
Q 001362          553 GESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---------------------  609 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~---------------------  609 (1092)
                       +..+++|+++..+-  ...+.+|.   +.|.++.|..+...+++.+.||.+.+|....                     
T Consensus       166 -D~s~rl~~v~~~k~~~~~~l~gHk---d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~  241 (893)
T KOG0291|consen  166 -DLSARLFGVDGNKNLFTYALNGHK---DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD  241 (893)
T ss_pred             -cceEEEEEeccccccceEeccCCC---cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence             66799999876555  56677777   9999999999999999999999999997661                     


Q ss_pred             --Cce-----EE----EEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcc
Q 001362          610 --VQL-----LT----TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  678 (1092)
Q Consensus       610 --~~~-----~~----~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  678 (1092)
                        ++.     ..    ..-.......+.+.+|++..+.|+++-..|.+.+|+++.-..+..+..                
T Consensus       242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSi----------------  305 (893)
T KOG0291|consen  242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSI----------------  305 (893)
T ss_pred             ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeec----------------
Confidence              111     00    001111124578888888888888888888888888876655543331                


Q ss_pred             ccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-Ce
Q 001362          679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GV  757 (1092)
Q Consensus       679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~  757 (1092)
                                                                            ...+|..++|+..|.+++.++.. |.
T Consensus       306 ------------------------------------------------------s~~~I~t~~~N~tGDWiA~g~~klgQ  331 (893)
T KOG0291|consen  306 ------------------------------------------------------SDQKILTVSFNSTGDWIAFGCSKLGQ  331 (893)
T ss_pred             ------------------------------------------------------ccceeeEEEecccCCEEEEcCCccce
Confidence                                                                  34567888999999999888876 99


Q ss_pred             eEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee
Q 001362          758 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI  836 (1092)
Q Consensus       758 i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~  836 (1092)
                      +.+|+++...+                        .  +..++|...+.++++||||+++|+|+ ||+|+|||..++-|+
T Consensus       332 LlVweWqsEsY------------------------V--lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~  385 (893)
T KOG0291|consen  332 LLVWEWQSESY------------------------V--LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF  385 (893)
T ss_pred             EEEEEeeccce------------------------e--eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence            99999987643                        1  22346999999999999999999998 799999999999999


Q ss_pred             EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccc-cCCeEEEEEcCCCCEEEEEeCCC-cEEEEE
Q 001362          837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDA-QIFVWD  914 (1092)
Q Consensus       837 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~s~s~Dg-~i~iwd  914 (1092)
                      .+|..|...|+.+.|+. .++.+++.+-||+|+.||+..++..+++... .-...|++..|.|..++.|+.|. .|+||+
T Consensus       386 vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS  464 (893)
T KOG0291|consen  386 VTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS  464 (893)
T ss_pred             EEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence            99999999999999999 8999999999999999999999999888753 23456788888899999988876 599999


Q ss_pred             cCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEE
Q 001362          915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV  993 (1092)
Q Consensus       915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l  993 (1092)
                      +++|+     .+..+.||..   +|.+++|+|+|..|++ +.|.+|++||+-........+ .+...+..+.|+|||+-|
T Consensus       465 ~qTGq-----llDiLsGHEg---PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~el  535 (893)
T KOG0291|consen  465 VQTGQ-----LLDILSGHEG---PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKEL  535 (893)
T ss_pred             eecCe-----eeehhcCCCC---cceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeE
Confidence            99965     6778888876   8999999999999999 699999999986543222212 357789999999999999


Q ss_pred             EEEECCCcEEEEEcCCCceEEeeccccccCCCCc----------cCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001362          994 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTS----------CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus       994 ~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
                      ++++.||.|.+||...+.....+.....+..+..          ...-+-..+++++ ||..+++|+....|+++++++.
T Consensus       536 aVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~  614 (893)
T KOG0291|consen  536 AVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEG  614 (893)
T ss_pred             EEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchh
Confidence            9999999999999999988866654443333310          1111225678888 6899999999999999999764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.2e-41  Score=359.13  Aligned_cols=625  Identities=14%  Similarity=0.141  Sum_probs=415.9

Q ss_pred             ceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-
Q 001362          337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-  415 (1092)
Q Consensus       337 V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-  415 (1092)
                      -..++.+|-.. ++|- -....|.+||+.....-+                   ++..|..+++|+|||++|+|+|+|- 
T Consensus        40 ~~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEc   98 (1080)
T KOG1408|consen   40 ANGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGEC   98 (1080)
T ss_pred             CCccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEeccc
Confidence            34566677665 3332 123689999988765443                   2667889999999999999999983 


Q ss_pred             -CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC--CCcEEEEECCCCceeEEEecCCcCeEEEe
Q 001362          416 -SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVYSLC  492 (1092)
Q Consensus       416 -~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  492 (1092)
                       ....+++|++..-..+.   ++..|...|+|++|+|.++  ++++.+.  |-.|.+||++.......-+ -...|..++
T Consensus        99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~  172 (1080)
T KOG1408|consen   99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVA  172 (1080)
T ss_pred             CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEE
Confidence             66679999999876555   7889999999999999999  6777664  4467889887654433222 345677888


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEE---ecCCCCceEEEEEccCCCEEEEEecCC-CC--------ceeEEEE
Q 001362          493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDAPGLGCTRMAYSANGRRLFSCGTSK-EG--------ESFLVEW  560 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~~i~~~~~s~dg~~l~~~~~~~-~~--------~~~i~iw  560 (1092)
                      |  +.||.++++.+ ...|++|.++.......   +.+...-.-.+.   +..+++.+..-+ -.        .+.+.-+
T Consensus       173 f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr---~n~f~avaCg~gicAestfait~qGhLvEF  246 (1080)
T KOG1408|consen  173 F--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLR---FNEFLAVACGVGICAESTFAITAQGHLVEF  246 (1080)
T ss_pred             E--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccc---cchhhhhhhcCcccccceEEEecccceeee
Confidence            8  66888888876 56899999887652211   111100000000   111111111000 00        1112111


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC----------------------
Q 001362          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA----------------------  618 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~----------------------  618 (1092)
                        .+.+++.....-.  .....|++.+  .+++++|+.+|.|++|+..+-....+++.                      
T Consensus       247 --SsRRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~  320 (1080)
T KOG1408|consen  247 --SSRRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESS  320 (1080)
T ss_pred             --chhhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccC
Confidence              1111111111111  1234455554  57899999999999999877544443321                      


Q ss_pred             CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCcee---eecccccCceeeeeecCCCccccccccCCceeecCCCC
Q 001362          619 GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV---DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK  695 (1092)
Q Consensus       619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s  695 (1092)
                      +...+...++.|++....|.+...|..++|||+.+...+   ..+--|...|+.+..-|.......     ...     -
T Consensus       321 ~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~-----~ac-----l  390 (1080)
T KOG1408|consen  321 PAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPT-----AAC-----L  390 (1080)
T ss_pred             cccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcc-----ccc-----C
Confidence            112233456889999999999999999999999876443   334457777777665542111000     000     1


Q ss_pred             CCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccc
Q 001362          696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT  775 (1092)
Q Consensus       696 ~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~  775 (1092)
                      |.+ -+++++.|++||+|++...........             =.++.+-..++..  |+...+..             
T Consensus       391 p~~-cF~TCSsD~TIRlW~l~~ctnn~vyrR-------------Nils~~l~ki~y~--d~~~q~~~-------------  441 (1080)
T KOG1408|consen  391 PRG-CFTTCSSDGTIRLWDLAFCTNNQVYRR-------------NILSANLSKIPYE--DSTQQIMH-------------  441 (1080)
T ss_pred             Ccc-ceeEecCCCcEEEeecccccccceeec-------------ccchhhhhcCccc--cCchhhhh-------------
Confidence            222 378999999999999875322211100             0011111101111  10000000             


Q ss_pred             cccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC
Q 001362          776 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH  854 (1092)
Q Consensus       776 ~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~  854 (1092)
                       ....-++|-....      .  .+....++++++||+|++||+|. .|.++||++...+....+..|..+|.|+.||-.
T Consensus       442 -d~~~~~fdka~~s------~--~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p  512 (1080)
T KOG1408|consen  442 -DASAGIFDKALVS------T--CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFP  512 (1080)
T ss_pred             -hccCCcccccchh------h--cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCc
Confidence             0001111111100      0  02567899999999999999998 599999999999999999999999999999852


Q ss_pred             --CCCEEEEEeCCCcEEEEEcCC-ceeeEeeccccCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeecC
Q 001362          855 --DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTP  929 (1092)
Q Consensus       855 --d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  929 (1092)
                        ..++||+++.|..|+|||+.. ..++.++.+|+..|+++.|.-.|  ..++++|.|+.|.+--.....  .. .+-.-
T Consensus       513 ~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~--~g-~~f~r  589 (1080)
T KOG1408|consen  513 VLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS--SG-RLFPR  589 (1080)
T ss_pred             hhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc--Cc-eeccc
Confidence              357999999999999999965 46788999999999999998887  789999999976543322100  00 11111


Q ss_pred             CCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccC--CCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001362          930 DGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus       930 ~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd 1006 (1092)
                      ..+......+..++..|..+++++ +.|..|+|||+.+|+..+.+...  |.+..-.+...|.|-||++...|.++.++|
T Consensus       590 ~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~D  669 (1080)
T KOG1408|consen  590 HTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVD  669 (1080)
T ss_pred             cccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEE
Confidence            111111246889999999999999 78999999999999999886654  467777888999999999999999999999


Q ss_pred             cCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001362         1007 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus      1007 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
                      ..+|++++++.        .|+..|.  .+.|.+ |...|++.+.||.|.||.++.
T Consensus       670 f~sgEcvA~m~--------GHsE~VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  670 FVSGECVAQMT--------GHSEAVT--GVKFLN-DCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eccchhhhhhc--------Ccchhee--eeeecc-cchhheeecCCceEEEEECch
Confidence            99999998887        3455555  567888 689999999999999999864

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.6e-40  Score=350.83  Aligned_cols=509  Identities=15%  Similarity=0.184  Sum_probs=379.1

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEc--CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~--~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      +.+..|...++|+|||++|+ ++|+|-  ....++||++..-..+..                   +..|+-.|+|++|+
T Consensus        72 hlvnssRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFs  131 (1080)
T KOG1408|consen   72 HLVNSSRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFS  131 (1080)
T ss_pred             heecccCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeec
Confidence            34556777999999999998 689986  446799999998776654                   66799999999999


Q ss_pred             CCCCEEEEEeC--CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE----
Q 001362          406 PDGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY----  479 (1092)
Q Consensus       406 pdg~~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~----  479 (1092)
                      |.++|+++.+.  |-.|.+||+.-.....    -..-...|.+++|+.||.  +++|.+ ...|++|.++.++...    
T Consensus       132 p~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiP  204 (1080)
T KOG1408|consen  132 PGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIP  204 (1080)
T ss_pred             CCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCcc
Confidence            99999998764  5568899887543222    123456799999999999  788887 5689999987665210    


Q ss_pred             ---------EE------------------------ecC-----------------CcCeEEEeecccCCccEEEEEecCC
Q 001362          480 ---------SF------------------------EGH-----------------GAPVYSLCPHAKENIHFIFSISVDG  509 (1092)
Q Consensus       480 ---------~~------------------------~~~-----------------~~~v~~~~~~~~~~~~~l~s~~~dg  509 (1092)
                               .+                        .||                 +..-+|++.    +.+++++|+.+|
T Consensus       205 l~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g  280 (1080)
T KOG1408|consen  205 LPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKG  280 (1080)
T ss_pred             ccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccc
Confidence                     00                        000                 011123333    346999999999


Q ss_pred             eEEEEEcCCCCceEEecC--------------------C----CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001362          510 KIKAWLYDSLGARVDYDA--------------------P----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       510 ~i~vwd~~~~~~~~~~~~--------------------~----~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      .|++++..+..-..++..                    .    -.....+.|++....|.+...    +..+++||++.-
T Consensus       281 ~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~  356 (1080)
T KOG1408|consen  281 MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDV  356 (1080)
T ss_pred             eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEecccc
Confidence            999998765432221110                    0    012356778888888888765    667999999876


Q ss_pred             eEEEEEeeccccCCceEEEEEcCC-----------CCEEEEEeCCCcEEEEECCCCceEEEE-------------e----
Q 001362          566 AIKRTYQGLQLQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQLLTTI-------------D----  617 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~p~-----------~~~l~~~s~dg~i~iwd~~~~~~~~~~-------------~----  617 (1092)
                      ..+......-.|...|+.+.--|.           ...+++++.|++||+|+++.+..-..+             .    
T Consensus       357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~  436 (1080)
T KOG1408|consen  357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST  436 (1080)
T ss_pred             ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCc
Confidence            554333222222356666554441           235889999999999999763211100             0    


Q ss_pred             ------------------CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccc
Q 001362          618 ------------------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT  679 (1092)
Q Consensus       618 ------------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  679 (1092)
                                        .-+....+.+++.+|+|++||+|..-|.++||++.+.+....+..|...|.|+.++-..   
T Consensus       437 ~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~---  513 (1080)
T KOG1408|consen  437 QQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV---  513 (1080)
T ss_pred             hhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch---
Confidence                              00122358899999999999999999999999999999999999999999999998221   


Q ss_pred             cccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCC--cEEEEeecCCe
Q 001362          680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG--QAIFALASNGV  757 (1092)
Q Consensus       680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~dg~  757 (1092)
                                      -..++|++++.|.-|.++|...     .+.+.....+|...|+++.|.-+|  ..+++++.|..
T Consensus       514 ----------------~~~kLLASasrdRlIHV~Dv~r-----ny~l~qtld~HSssITsvKFa~~gln~~MiscGADks  572 (1080)
T KOG1408|consen  514 ----------------LTNKLLASASRDRLIHVYDVKR-----NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS  572 (1080)
T ss_pred             ----------------hhhHhhhhccCCceEEEEeccc-----ccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence                            1357899999999999999652     233333346799999999999888  77899999977


Q ss_pred             eEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee
Q 001362          758 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI  836 (1092)
Q Consensus       758 i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~  836 (1092)
                      +.+-..+..                   .+|.......-+  -....+..+++.|..++++++. |..|+||++++++..
T Consensus       573 imFr~~qk~-------------------~~g~~f~r~t~t--~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~  631 (1080)
T KOG1408|consen  573 IMFRVNQKA-------------------SSGRLFPRHTQT--LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV  631 (1080)
T ss_pred             hheehhccc-------------------cCceeccccccc--cccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence            765322211                   011101110000  1345678999999999999998 799999999999999


Q ss_pred             EEecC---CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001362          837 LTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW  913 (1092)
Q Consensus       837 ~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iw  913 (1092)
                      +.|++   |.+....+...| .+.|||+.+.|+++.++|..+|+++.+..||+..|+.+.|++|-+.|++++.||.|.||
T Consensus       632 k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW  710 (1080)
T KOG1408|consen  632 KSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW  710 (1080)
T ss_pred             eeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence            99975   556788999999 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCC
Q 001362          914 DVDG  917 (1092)
Q Consensus       914 d~~~  917 (1092)
                      .+..
T Consensus       711 ~lp~  714 (1080)
T KOG1408|consen  711 KLPL  714 (1080)
T ss_pred             ECch
Confidence            9864

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=3.9e-39  Score=341.25  Aligned_cols=643  Identities=15%  Similarity=0.171  Sum_probs=436.1

Q ss_pred             EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC---EEEEEeC
Q 001362          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS---LLGVAYS  416 (1092)
Q Consensus       340 v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~---~las~~~  416 (1092)
                      ..|.|.+  ++|.|.. ..|.+||..+.....                   .+.||..+|+|+.|-|+.+   ++++|+.
T Consensus        20 ~sw~~~~--~vafGa~-~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s   77 (764)
T KOG1063|consen   20 SSWGPGG--LVAFGAG-PAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS   77 (764)
T ss_pred             ccccccc--eEEecCC-ceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence            3456666  4666543 789999987653333                   3889999999999999888   8999999


Q ss_pred             CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc--eeEEEecCCcCeE--EEe
Q 001362          417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVY--SLC  492 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~--~~~  492 (1092)
                      |+.|.+|.++. +.+.....+.+|...+.|+.  ....  ...+...|+++.+||.+..+  ++..+.-....+.  +++
T Consensus        78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~--a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~  152 (764)
T KOG1063|consen   78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCVV--ARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA  152 (764)
T ss_pred             CCcEEEEEEee-hheEEEEeecCcceeEEEEE--eeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence            99999999993 44555557777766655544  3222  22223789999999985555  3333333333333  334


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCceEEEEEccCCC---EEEEEecCCCCceeEEEEeCCCCe-
Q 001362          493 PHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGA-  566 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~dg~---~l~~~~~~~~~~~~i~iwd~~~~~-  566 (1092)
                      +.+.++.-.++.|+.+..|.++.-...  .....+.+|...|.+++|...+.   +|++++.    |..|++|.+.-+. 
T Consensus       153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~~  228 (764)
T KOG1063|consen  153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGDD  228 (764)
T ss_pred             hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecCC
Confidence            444334345666777788888855433  34567899999999999987655   4555543    7789999764322 


Q ss_pred             --------------------EEEE----------EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEE
Q 001362          567 --------------------IKRT----------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLT  614 (1092)
Q Consensus       567 --------------------~~~~----------~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~--~~~~  614 (1092)
                                          ....          +.||.   +.|+++.|+|.+..|++++.|.++.+|...+.  -.+.
T Consensus       229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe---DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~  305 (764)
T KOG1063|consen  229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE---DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD  305 (764)
T ss_pred             ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc---cceEEEEEccchhhheecccCcceEEEecCCccceEEE
Confidence                                1111          23666   99999999999999999999999999987654  3333


Q ss_pred             EEeC---CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC---ceeeecccccCceeeeeecCCCccccccccCCce
Q 001362          615 TIDA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV  688 (1092)
Q Consensus       615 ~~~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  688 (1092)
                      ....   .+........-|+|+++.+++-+..|..++|...+.   .....+.||...|..++|.               
T Consensus       306 ~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~---------------  370 (764)
T KOG1063|consen  306 VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD---------------  370 (764)
T ss_pred             EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec---------------
Confidence            3321   122234678999999999999999999999994443   3444677999999999997               


Q ss_pred             eecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCc
Q 001362          689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL  768 (1092)
Q Consensus       689 ~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~  768 (1092)
                             |.|.++++.+.|.+-|+|-.- +.......+..|+ .|...+.++++-+..-.+++++....+++|+.+..-.
T Consensus       371 -------psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQ-iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv  441 (764)
T KOG1063|consen  371 -------PSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQ-IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV  441 (764)
T ss_pred             -------CCCCEEEEeccccceeeeccc-ccccceeeecccc-cccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence                   678899999999999998755 2222234444443 5899999999999666688999999999999765321


Q ss_pred             CcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEE-EEEeCCeEE-------------EEEc----
Q 001362          769 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL-FSASGGVIS-------------LYIV----  830 (1092)
Q Consensus       769 ~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l-~~~sdg~i~-------------iwd~----  830 (1092)
                                  +......|.+....+.  ......|..+-.|...-+. .+-+.+.-.             +...    
T Consensus       442 ------------~~l~~i~g~~~~~~~~--~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Ed  507 (764)
T KOG1063|consen  442 ------------KSLMAICGKCFKGSDE--LPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTED  507 (764)
T ss_pred             ------------HHHHHHhCccccCchh--cccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHH
Confidence                        0000000100000000  0012223333333221111 000001000             0000    


Q ss_pred             -----CCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-----cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCE
Q 001362          831 -----MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNI  900 (1092)
Q Consensus       831 -----~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~  900 (1092)
                           .....++.+.+|..+|.+++.+| +++++|+++...     .|++|+..+...+..+.+|+-.|+.|+|||||++
T Consensus       508 qLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~  586 (764)
T KOG1063|consen  508 QLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRY  586 (764)
T ss_pred             HHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcE
Confidence                 01223456789999999999999 899999988654     7899999999989999999999999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCc--eeeee-eccC
Q 001362          901 LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL--TCLKQ-WFPI  976 (1092)
Q Consensus       901 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~--~~~~~-~~~~  976 (1092)
                      |+++|+|+++.+|.......... .+...+.|..   -|.++.|+||+.++|+ +.|.+|++|.....  +.+.. -...
T Consensus       587 LLsvsRDRt~sl~~~~~~~~~e~-~fa~~k~HtR---IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~  662 (764)
T KOG1063|consen  587 LLSVSRDRTVSLYEVQEDIKDEF-RFACLKAHTR---IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLK  662 (764)
T ss_pred             EEEeecCceEEeeeeecccchhh-hhccccccce---EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhc
Confidence            99999999999999865432221 2233444443   6899999999999999 68999999999877  55544 2345


Q ss_pred             CCCCEEEEEEec-----CCCEEEEEECCCcEEEEEcCCCce---EEeecc-ccccCCCCccCcccceEEEECCC------
Q 001362          977 SSVPISQATFSC-----DCRMVFTSFVDGTLSIHEASNLEV---QCRILS-TAYLRPTTSCLHVYPHAIAAHPL------ 1041 (1092)
Q Consensus       977 h~~~v~~l~fs~-----dg~~l~t~~~Dg~i~vwd~~~~~~---~~~~~~-~~~~~~~~~~~~v~~~~~~~~p~------ 1041 (1092)
                      ++..|+.+++.|     .+..+++|-..|.|.+|....-..   ...+.. ..--+...|.+.|.  .++|.|.      
T Consensus       663 ~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~--rl~w~p~~~~~~~  740 (764)
T KOG1063|consen  663 FSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVN--RLLWRPTCSDDWV  740 (764)
T ss_pred             cCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhh--eeEeccccccccc
Confidence            789999999987     223677888999999999662111   111111 11111222344555  4566663      


Q ss_pred             ---CCCEEEEEeCCCcEEEEeCC
Q 001362         1042 ---KPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1042 ---~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                         ....|++|++|..++++++.
T Consensus       741 ~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  741 EDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             cccceeEEeeecccceeEEeecc
Confidence               22357999999999999874

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=3.2e-39  Score=341.90  Aligned_cols=623  Identities=13%  Similarity=0.114  Sum_probs=417.9

Q ss_pred             eeeecccCCCCceEEeecCCCc--eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          326 VAQTLIEGSSSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~--~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ...+|.||..+|+|+.|-|+.+  -++++|+.|+.|++|.++.........                 +.+|...+.  +
T Consensus        46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~-----------------~~g~~~~~~--c  106 (764)
T KOG1063|consen   46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT-----------------IQGHCKECV--C  106 (764)
T ss_pred             eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe-----------------ecCcceeEE--E
Confidence            4578999999999999998876  147899999999999998444333222                 445555544  4


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCcc-cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC--ceeEE
Q 001362          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG--SRTYS  480 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~--~~~~~  480 (1092)
                      ++.......+...|+++.+||.+..+.. .....+.-...--.|+++.++.+.++++.|+.+..|.++.-.++  +.+..
T Consensus       107 v~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~e  186 (764)
T KOG1063|consen  107 VVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAE  186 (764)
T ss_pred             EEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEE
Confidence            4433333333478999999999554411 11111222222345777788666667888888888988875544  45678


Q ss_pred             EecCCcCeEEEeecccCC-ccEEEEEecCCeEEEEEcCCCC-----------------ce-------E-------EecCC
Q 001362          481 FEGHGAPVYSLCPHAKEN-IHFIFSISVDGKIKAWLYDSLG-----------------AR-------V-------DYDAP  528 (1092)
Q Consensus       481 ~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~-----------------~~-------~-------~~~~~  528 (1092)
                      +.||.+.|.+++|..... .-+|+++|.|..||+|.+....                 ..       .       .+.+|
T Consensus       187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH  266 (764)
T KOG1063|consen  187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH  266 (764)
T ss_pred             eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence            899999999999975544 5689999999999999764332                 00       0       12478


Q ss_pred             CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC--eEEEEEeecccc--CCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001362          529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQ--HNSVSVVHFDTAKDQILAAGDDHVIKI  604 (1092)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~~~s~dg~i~i  604 (1092)
                      ...|.++.|+|.+..|++++.    |..+.+|.+.+.  --+....--...  ........|+|+++.+++-+..|..++
T Consensus       267 eDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl  342 (764)
T KOG1063|consen  267 EDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL  342 (764)
T ss_pred             ccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence            889999999999998998876    556999987654  333332211111  245888999999999999999999999


Q ss_pred             EECC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC----ceeeecccccCceeeeeecCCCccc
Q 001362          605 WDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVT  679 (1092)
Q Consensus       605 wd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~  679 (1092)
                      |... ........-..++...|..++|+|.|.+|++.+.|.+-|+|..-..    ..+...+.|...++|+++-+     
T Consensus       343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-----  417 (764)
T KOG1063|consen  343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-----  417 (764)
T ss_pred             EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-----
Confidence            9833 3344444444567788999999999999999999999999865421    33445566777777777752     


Q ss_pred             cccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccC------CccccccEEEEEEecCCcEEEEee
Q 001362          680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP------SKVKANKISRLTYNNGGQAIFALA  753 (1092)
Q Consensus       680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~------~~~~~~~i~~l~~s~~g~~l~~~~  753 (1092)
                                       ....+++|..+..+|+|+....-...+..+.-+      .......|..+-.|.+.-..= -.
T Consensus       418 -----------------~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~-e~  479 (764)
T KOG1063|consen  418 -----------------EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG-ET  479 (764)
T ss_pred             -----------------CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc-cc
Confidence                             244567778888889998542211111111000      001122233333333221100 00


Q ss_pred             cCCee-EEEeecCCCcCcCcccccccCCccccCCCCCceeeecC-----CCCCCCCCeeEEEEecCCCEEEEEeC-----
Q 001362          754 SNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT-----TDSNSQEAVPCFALSKNDAYLFSASG-----  822 (1092)
Q Consensus       754 ~dg~i-~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l-----~~~~~~~~v~~~~~s~dg~~l~~~sd-----  822 (1092)
                      .+|.. ..|. +        ...+.....+..+.....+....+     +-.+|..+|.+++.+|+|+++|++..     
T Consensus       480 ~~G~~~~~~~-e--------t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~e  550 (764)
T KOG1063|consen  480 NTGGEAAVCA-E--------TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKE  550 (764)
T ss_pred             ccccccceee-e--------cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCcc
Confidence            11110 0000 0        000011111122222222222211     12369999999999999999999961     


Q ss_pred             -CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce----eeEeeccccCCeEEEEEcCC
Q 001362          823 -GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDA  897 (1092)
Q Consensus       823 -g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h~~~V~~l~~spd  897 (1092)
                       ..|++|+..+...++.+.+|.-.|+.++||| |+++|++.+.|.++.+|......    .....+.|+.-|+++.|+||
T Consensus       551 hAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd  629 (764)
T KOG1063|consen  551 HAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD  629 (764)
T ss_pred             ceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc
Confidence             3499999999999999999999999999999 99999999999999999986542    13446789999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCC-----CEEEEE-eCCcEEEEEcCC-----
Q 001362          898 LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-----TRFLLV-HETHLAIYEAEE-----  966 (1092)
Q Consensus       898 g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-----~~la~~-~d~~i~lwd~~~-----  966 (1092)
                      ++++||+|+|++|+||........   .+... ........|+.+++.|-.     ..+++| ..|.|.+|....     
T Consensus       630 e~~FaTaSRDK~VkVW~~~~~~d~---~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~  705 (764)
T KOG1063|consen  630 EKYFATASRDKKVKVWEEPDLRDK---YISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQV  705 (764)
T ss_pred             cceeEEecCCceEEEEeccCchhh---hhhhh-chhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccc
Confidence            999999999999999999875311   11111 112223478899987632     245566 568999998541     


Q ss_pred             --cee----eeeeccCCCCCEEEEEEecC----------CCEEEEEECCCcEEEEEcC
Q 001362          967 --LTC----LKQWFPISSVPISQATFSCD----------CRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       967 --~~~----~~~~~~~h~~~v~~l~fs~d----------g~~l~t~~~Dg~i~vwd~~ 1008 (1092)
                        +..    ...-..+|...|..+.|+|-          ...|++|+.|.+++++++.
T Consensus       706 ~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  706 TVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             cceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence              110    01112346889999999974          2357999999999999875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-41  Score=338.68  Aligned_cols=284  Identities=19%  Similarity=0.250  Sum_probs=266.7

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC--C
Q 001362          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--G  408 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd--g  408 (1092)
                      .|.+.+|..+.||+|++ +||||+.+|.++||+..++..+.+                   +.||...|.++.|+|.  +
T Consensus       172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~  231 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD  231 (459)
T ss_pred             ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence            36677999999999998 799999999999999999977765                   8899999999999996  6


Q ss_pred             CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe
Q 001362          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  488 (1092)
                      ..+|+|+.||++++|++.+...+.   .+.+|...|..++|+|+|+  +|+|++.|.+-++||+.++..+....||...|
T Consensus       232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v  306 (459)
T KOG0272|consen  232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV  306 (459)
T ss_pred             cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence            799999999999999999877666   6889999999999999999  89999999999999999999999999999999


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001362          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1092)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1092)
                      .+++|.+  ||.++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+.    |++++|||++....+
T Consensus       307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l  380 (459)
T KOG0272|consen  307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL  380 (459)
T ss_pred             ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence            9999955  7789999999999999999999999999999999999999999999999986    778999999999999


Q ss_pred             EEEeeccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001362          569 RTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1092)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~p-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  647 (1092)
                      .++.+|.   +-|..+.|+| .|.+|++++.|++++||...+..+++.+.+|..  .|.++..++|+..+++++.|.+++
T Consensus       381 y~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~K  455 (459)
T KOG0272|consen  381 YTIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIK  455 (459)
T ss_pred             eeccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceee
Confidence            9999998   9999999999 688899999999999999999999999997755  599999999999999999999999


Q ss_pred             EEE
Q 001362          648 ILE  650 (1092)
Q Consensus       648 iw~  650 (1092)
                      +|.
T Consensus       456 LW~  458 (459)
T KOG0272|consen  456 LWR  458 (459)
T ss_pred             ecc
Confidence            995

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.1e-39  Score=328.25  Aligned_cols=345  Identities=19%  Similarity=0.267  Sum_probs=288.7

Q ss_pred             CCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCC--CCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001362          322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1092)
Q Consensus       322 ~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~--~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V  399 (1092)
                      +|....+.+. |+.+|.+++|+|-..-++|+|+.|-+.++|++..  +.......+     ..|...--.  -...+..|
T Consensus       167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l-----rh~~~~~~~--s~~~nkdV  238 (524)
T KOG0273|consen  167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL-----RHCIREGGK--SVPSNKDV  238 (524)
T ss_pred             ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh-----hhhhhhhcc--cCCccCCc
Confidence            5666667777 9999999999997765899999999999999874  111110000     000000000  01134689


Q ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001362          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      ++++|+.+|..||+|+.||.++||+...+. +.   ++..|.++|.++.|+.+|.  +|++++.|+++.+||..+|...+
T Consensus       239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q  312 (524)
T KOG0273|consen  239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ  312 (524)
T ss_pred             ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence            999999999999999999999999998743 32   6888999999999999999  89999999999999999999999


Q ss_pred             EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001362          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                      .+.-|..+-..+.|-   +...+++++.||.|+|+.+....+..++.+|.++|.++.|.|.|.+|++++.    |+++++
T Consensus       313 ~f~~~s~~~lDVdW~---~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki  385 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQ---SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI  385 (524)
T ss_pred             eeeeccCCccceEEe---cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence            999999886666664   2257999999999999999999999999999999999999999999999986    778999


Q ss_pred             EeCCCCeEEEEEeeccccCCceEEEEEcCCC---------CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001362          560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---------~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                      |+.........+..|.   ..|+.+.|+|.|         ..+++++.|++|++||+..+.++..+..|  ..+|.+++|
T Consensus       386 Ws~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvaf  460 (524)
T KOG0273|consen  386 WSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAF  460 (524)
T ss_pred             eecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEe
Confidence            9999998888999888   899999999974         46899999999999999999999998755  457999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccccc
Q 001362          631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  710 (1092)
Q Consensus       631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i  710 (1092)
                      +|+|+++|+|+.||.|.+|+.++++.++...                                                 
T Consensus       461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-------------------------------------------------  491 (524)
T KOG0273|consen  461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-------------------------------------------------  491 (524)
T ss_pred             cCCCcEEEecCCCCeeEeccccchheeEeec-------------------------------------------------
Confidence            9999999999999999999999987776554                                                 


Q ss_pred             ceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEee
Q 001362          711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  763 (1092)
Q Consensus       711 ~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~  763 (1092)
                                            ..+.|..+.|+.+|..+.++.+||.+++-|+
T Consensus       492 ----------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  492 ----------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             ----------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence                                  2344677888888888888888888887665

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=8.8e-37  Score=330.10  Aligned_cols=579  Identities=16%  Similarity=0.173  Sum_probs=420.1

Q ss_pred             EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001362          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  419 (1092)
Q Consensus       340 v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~  419 (1092)
                      ..+..-|..++++.+.+.+..+||.+.-..+..                   -..+...|+|++=..+  +..+++.. .
T Consensus        39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g~-~   96 (910)
T KOG1539|consen   39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASGN-K   96 (910)
T ss_pred             eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecCc-E
Confidence            455555556788888899999999988776653                   2346788998887655  44444333 3


Q ss_pred             EEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-cee----EEEecCCcCeEEEeec
Q 001362          420 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRT----YSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       420 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~----~~~~~~~~~v~~~~~~  494 (1092)
                      |.+|..  |+.++  ..+.+|.+.|.-+.  +-|.  .++++..++.+.||+..++ ..+    .-++...+.|+++. +
T Consensus        97 i~~~~r--gk~i~--~~~~~~~a~v~~l~--~fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H  167 (910)
T KOG1539|consen   97 IYAYAR--GKHIR--HTTLLHGAKVHLLL--PFGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H  167 (910)
T ss_pred             EEEEEc--cceEE--EEeccccceEEEEe--eecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence            666654  33233  24567777777664  3456  6889999999999998874 221    12222333377664 4


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001362          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  574 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  574 (1092)
                      |+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|..    +|.|.+++++.++.+.+|+..
T Consensus       168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d  243 (910)
T KOG1539|consen  168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD  243 (910)
T ss_pred             chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence            4433457899999999999999999999999999999999999998888888875    667999999999999999976


Q ss_pred             cccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceEEEEe-CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001362          575 QLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       575 ~~~~~~v~~~~~~p~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      .   +.|+.++|..||+.+++ |+..|.+.+||++..+.+..+. .|  ...+....|-|....+++++.|+++++|-.+
T Consensus       244 ~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD  318 (910)
T KOG1539|consen  244 W---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFD  318 (910)
T ss_pred             c---cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEee
Confidence            6   89999999999977655 6677999999999988887765 33  3468889999999999999999999998665


Q ss_pred             CC----ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccccc
Q 001362          653 ES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  728 (1092)
Q Consensus       653 ~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~  728 (1092)
                      ++    +.++.-.|                                                                  
T Consensus       319 ~~dg~pR~LR~R~G------------------------------------------------------------------  332 (910)
T KOG1539|consen  319 SGDGVPRLLRSRGG------------------------------------------------------------------  332 (910)
T ss_pred             CCCCcchheeeccC------------------------------------------------------------------
Confidence            33    33333334                                                                  


Q ss_pred             CCccccccEEEEEEe-cCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeE
Q 001362          729 PSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC  807 (1092)
Q Consensus       729 ~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~  807 (1092)
                          |..+..++.|. .+|..+.+++.|++++.+++-...+...-..       ..+...++...... +..-.-.+|..
T Consensus       333 ----Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~~~~-~~~~k~p~i~~  400 (910)
T KOG1539|consen  333 ----HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVNVFS-TEKLKLPPIVE  400 (910)
T ss_pred             ----CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccccccc-hhhhcCCccee
Confidence                44444445444 4555555555555555554433222110000       00111100000000 00002234555


Q ss_pred             EEEecC-----CCEEEEE-eCCeEEEEEcCCcee-eEEec-----CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC
Q 001362          808 FALSKN-----DAYLFSA-SGGVISLYIVMTFKT-ILTIM-----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS  875 (1092)
Q Consensus       808 ~~~s~d-----g~~l~~~-sdg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~  875 (1092)
                      +++...     .+.++.. ++...+.|+...... ...+.     .....+++++.++ .|++.+.|+..|.|.+|++++
T Consensus       401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQS  479 (910)
T KOG1539|consen  401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQS  479 (910)
T ss_pred             eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEccc
Confidence            555432     1233333 257799999986554 23332     2346889999999 999999999999999999999


Q ss_pred             ceeeEee---ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEE
Q 001362          876 SEVISKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL  952 (1092)
Q Consensus       876 ~~~~~~l---~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la  952 (1092)
                      |-....+   ..|.++|++++...-++.+++++.+|.+++||++....     +....-    ...+..+..+.....+|
T Consensus       480 Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-----~~~l~l----~~~~~~iv~hr~s~l~a  550 (910)
T KOG1539|consen  480 GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-----KKSLRL----GSSITGIVYHRVSDLLA  550 (910)
T ss_pred             CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce-----eeeecc----CCCcceeeeeehhhhhh
Confidence            9999888   58999999999988889999999999999999998542     222211    12578888888888888


Q ss_pred             E-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcc
Q 001362          953 L-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHV 1031 (1092)
Q Consensus       953 ~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1031 (1092)
                      + ..|-.|.++|+.+.+.++. +.+|+..|+.++|||||++|++++.|++|++||+.++.++..+...           .
T Consensus       551 ~~~ddf~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----------~  618 (910)
T KOG1539|consen  551 IALDDFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----------S  618 (910)
T ss_pred             hhcCceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----------C
Confidence            8 5677899999999988887 6789999999999999999999999999999999999999777611           1


Q ss_pred             cceEEEECCCCCCEEEEEeCC-CcEEEEe
Q 001362         1032 YPHAIAAHPLKPTQFAVGLTN-GEVYVIE 1059 (1092)
Q Consensus      1032 ~~~~~~~~p~~~~~l~~~~~d-g~v~~w~ 1059 (1092)
                      .+..+.|+| .+++|||+..| ..|++|-
T Consensus       619 ~~~sls~SP-ngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  619 PCTSLSFSP-NGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             cceeeEECC-CCCEEEEEEecCceEEEEE
Confidence            245789999 58999999999 6899997

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9.1e-41  Score=333.85  Aligned_cols=285  Identities=17%  Similarity=0.258  Sum_probs=266.2

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC
Q 001362          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  473 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  473 (1092)
                      |.+.+|..+.||+|++.||+|+.+|.+++|+..+...+.   +|.+|...|.++.|+|......++||+.||++++|++.
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            456799999999999999999999999999999875444   89999999999999998432379999999999999999


Q ss_pred             CCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001362          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      +..++..+.+|...|..++|+|  +|++|.|++.|.+-++||+.+..+.....+|..+|.+++|.+||..+++|+.    
T Consensus       250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl----  323 (459)
T KOG0272|consen  250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL----  323 (459)
T ss_pred             CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence            9999999999999999999976  6789999999999999999999999999999999999999999999999987    


Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-
Q 001362          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-  632 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-  632 (1092)
                      |..-++||+++|.++..+.+|.   .+|..+.|+|+|..+++||.|++++|||++..+.+.++..|..  .|..|.|+| 
T Consensus       324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~  398 (459)
T KOG0272|consen  324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ  398 (459)
T ss_pred             cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence            6668999999999999999988   9999999999999999999999999999999999998887754  699999998 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001362          633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1092)
Q Consensus       633 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l  712 (1092)
                      .|.+|++++.|++++||...+..+++.+.||.+.|.++.++                      +|+..+++++.|.++++
T Consensus       399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis----------------------~d~~~i~t~s~DRT~KL  456 (459)
T KOG0272|consen  399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS----------------------PDSQAIATSSFDRTIKL  456 (459)
T ss_pred             CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec----------------------cCCceEEEeccCceeee
Confidence            78999999999999999999999999999999999999996                      78999999999999999


Q ss_pred             ec
Q 001362          713 EK  714 (1092)
Q Consensus       713 w~  714 (1092)
                      |.
T Consensus       457 W~  458 (459)
T KOG0272|consen  457 WR  458 (459)
T ss_pred             cc
Confidence            95

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-39  Score=306.52  Aligned_cols=298  Identities=20%  Similarity=0.284  Sum_probs=255.8

Q ss_pred             eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001362          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      +.-+|++|++.|+.++..+.+..++.+++.|.++.+|++.......-            .+  ...++||+..|..++.+
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G------------~~--~r~~~GHsH~v~dv~~s   72 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG------------VP--VRRLTGHSHFVSDVVLS   72 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC------------ce--eeeeeccceEecceEEc
Confidence            45689999999999999999877999999999999999876532221            11  11288999999999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC-
Q 001362          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-  484 (1092)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~-  484 (1092)
                      +||++.++++.|+++++||+.+|+..+   .|.+|...|.+++|++|++  .+++|+.|++|++||+. |.+..++..+ 
T Consensus        73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~  146 (315)
T KOG0279|consen   73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDS  146 (315)
T ss_pred             cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCC
Confidence            999999999999999999999996555   6889999999999999999  69999999999999955 4555555444 


Q ss_pred             -CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001362          485 -GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       485 -~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                       .+.|++++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+.    ++.+.+||++
T Consensus       147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~  222 (315)
T KOG0279|consen  147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLN  222 (315)
T ss_pred             CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEcc
Confidence             78999999999988899999999999999999999999999999999999999999999999875    6679999999


Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC-------CCCCceEEEccCCCE
Q 001362          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGTL  636 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~  636 (1092)
                      .++.+..+...    ..|.+++|+|+...|+.+ .+..|+|||++++..+..+.....       .+...+++|++||..
T Consensus       223 ~~k~lysl~a~----~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~t  297 (315)
T KOG0279|consen  223 EGKNLYSLEAF----DIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQT  297 (315)
T ss_pred             CCceeEeccCC----CeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcE
Confidence            99998887753    589999999986555554 455699999999998877754421       233557899999999


Q ss_pred             EEEEeCCCeEEEEECC
Q 001362          637 LAVIANENRIKILETP  652 (1092)
Q Consensus       637 l~~~~~dg~i~iw~~~  652 (1092)
                      |++|..|+.|++|.+.
T Consensus       298 Lf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  298 LFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEeeecCCcEEEEEee
Confidence            9999999999999864

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-38  Score=329.27  Aligned_cols=479  Identities=17%  Similarity=0.274  Sum_probs=360.0

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +++..|++.|-+|.|+|...+ +.++-..|.|.|||.++...++.+++                   ..-+|.+..|-+-
T Consensus         7 rk~~~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVksfeV-------------------~~~PvRa~kfiaR   66 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKSFEV-------------------SEVPVRAAKFIAR   66 (794)
T ss_pred             hHhhccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeeeeee-------------------cccchhhheeeec
Confidence            556679999999999999985 55567789999999999988876332                   5678999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEecCCc
Q 001362          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGA  486 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~  486 (1092)
                      -+++++|++|..|+||+..+++.+.   .+.+|...|.+++.+|...  +++|+|.|-+|++||++.+ .+.++|.||..
T Consensus        67 knWiv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H  141 (794)
T KOG0276|consen   67 KNWIVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEH  141 (794)
T ss_pred             cceEEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence            9999999999999999999997666   7899999999999999988  8999999999999999876 78899999999


Q ss_pred             CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC--CEEEEEecCCCCceeEEEEeCCC
Q 001362          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      .|.+++|+|. |...+++++-|++|++|.+....+..++.+|...|.++.+-+-|  .+|++++.    +..+.+||.++
T Consensus       142 yVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQt  216 (794)
T KOG0276|consen  142 YVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQT  216 (794)
T ss_pred             EEEEEEecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecch
Confidence            9999999987 55799999999999999999999999999999999999998755  58999875    77899999999


Q ss_pred             CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001362          565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       565 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      ..+++++.||.   ..|..++|+|.-..+++|++||+++||+..+.++..++...  ...+.+++-.+.++.+++|.+.|
T Consensus       217 k~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg  291 (794)
T KOG0276|consen  217 KSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEG  291 (794)
T ss_pred             HHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCC
Confidence            99999999999   89999999999999999999999999999998888887654  34689999999888999999888


Q ss_pred             eEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccc
Q 001362          645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  724 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~  724 (1092)
                      .+.+ .+....+...+.                                  +.|+.           +|...        
T Consensus       292 ~i~v-~lgreeP~vsMd----------------------------------~~gKI-----------iwa~~--------  317 (794)
T KOG0276|consen  292 SVTV-KLGREEPAVSMD----------------------------------SNGKI-----------IWAVH--------  317 (794)
T ss_pred             cEEE-EccCCCCceeec----------------------------------CCccE-----------EEEcC--------
Confidence            7755 222221111111                                  11111           12110        


Q ss_pred             ccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCce--eeecCCCCCCC
Q 001362          725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF--MVNDTTDSNSQ  802 (1092)
Q Consensus       725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~--~~~~l~~~~~~  802 (1092)
                                +.|..+-.-       +.+..+                           ++..|+.+  ...++.  .-.
T Consensus       318 ----------~ei~~~~~k-------s~~~~~---------------------------ev~DgErL~LsvKeLg--s~e  351 (794)
T KOG0276|consen  318 ----------SEIQAVNLK-------SVGAQK---------------------------EVTDGERLPLSVKELG--SVE  351 (794)
T ss_pred             ----------ceeeeeece-------eccCcc---------------------------cccCCccccchhhhcc--ccc
Confidence                      111111100       000000                           11111111  000010  011


Q ss_pred             CCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee
Q 001362          803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  882 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l  882 (1092)
                      -....++-+|+|+++++++||.-.||..-..+.     ...+......|++ |....|+-..++.|+++  ++.+..+.+
T Consensus       352 iyPq~L~hsPNGrfV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~ksi  423 (794)
T KOG0276|consen  352 IYPQTLAHSPNGRFVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSI  423 (794)
T ss_pred             cchHHhccCCCCcEEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCceEEE--ecceecccc
Confidence            123457889999999999999999987543321     2345667889999 77778888888999998  666666655


Q ss_pred             ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEE
Q 001362          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY  962 (1092)
Q Consensus       883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lw  962 (1092)
                      ...-.    +..--.|.+|...+ ++.+++||.++++.     ++..+-.      ...+.|+.+|.+++.+.|...+++
T Consensus       424 ~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~l-----VrrI~v~------~k~v~w~d~g~lVai~~d~Sfyil  487 (794)
T KOG0276|consen  424 RPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGEL-----VRRIEVT------SKHVYWSDNGELVAIAGDDSFYIL  487 (794)
T ss_pred             ccccc----eeeecCCceEEEEe-CCeEEEEEcccceE-----EEEEeec------cceeEEecCCCEEEEEecCceeEE
Confidence            42111    11112345555555 55599999998663     3333322      347999999999999888876666


Q ss_pred             EcC
Q 001362          963 EAE  965 (1092)
Q Consensus       963 d~~  965 (1092)
                      ...
T Consensus       488 ~~n  490 (794)
T KOG0276|consen  488 KFN  490 (794)
T ss_pred             Eec
Confidence            553

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.4e-38  Score=302.95  Aligned_cols=294  Identities=17%  Similarity=0.251  Sum_probs=267.6

Q ss_pred             eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001362          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      ..++|+||.+.|.++.|++|++ .++++|.||.+.|||.-|....+.                   ++-....|..+||+
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~s  106 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYS  106 (343)
T ss_pred             eEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEEC
Confidence            4489999999999999999998 589999999999999998876654                   33467899999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCC--C-cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001362          406 PDGSLLGVAYSKHIVQLYAYHGG--S-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~--~-~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      |.|+++|+|+-|+...||++.+.  + ..+...++.+|++.+.|+.|.+|+.   |+|++.|.+..+||+++|+.+..|.
T Consensus       107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~  183 (343)
T KOG0286|consen  107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFH  183 (343)
T ss_pred             CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEec
Confidence            99999999999999999999865  2 2234446889999999999999886   9999999999999999999999999


Q ss_pred             cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001362          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      +|.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|.+++|.|+|..+++|+.    +++.++||+
T Consensus       184 GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDl  258 (343)
T KOG0286|consen  184 GHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDL  258 (343)
T ss_pred             CCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEee
Confidence            99999999999876 7789999999999999999999999999999999999999999999999976    677999999


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001362          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      +..+.+..+.... ...+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|..  .|.++..+|||.-+++|+.
T Consensus       259 RaD~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSW  335 (343)
T KOG0286|consen  259 RADQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSW  335 (343)
T ss_pred             cCCcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecch
Confidence            9999998887433 457899999999999999999999999999999999999987754  7999999999999999999


Q ss_pred             CCeEEEEE
Q 001362          643 ENRIKILE  650 (1092)
Q Consensus       643 dg~i~iw~  650 (1092)
                      |..++||.
T Consensus       336 Ds~lriW~  343 (343)
T KOG0286|consen  336 DSTLRIWA  343 (343)
T ss_pred             hHheeecC
Confidence            99999994

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.6e-35  Score=320.28  Aligned_cols=547  Identities=13%  Similarity=0.152  Sum_probs=404.5

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001362          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  410 (1092)
                      ..+.+.|+|++-..+-- ++|.|   ..|.+|.  .|+.+..                  +..+|...|..+..  =|.+
T Consensus        73 ~~lp~~I~alas~~~~v-y~A~g---~~i~~~~--rgk~i~~------------------~~~~~~a~v~~l~~--fGe~  126 (910)
T KOG1539|consen   73 KPLPDKITALASDKDYV-YVASG---NKIYAYA--RGKHIRH------------------TTLLHGAKVHLLLP--FGEH  126 (910)
T ss_pred             CCCCCceEEEEecCceE-EEecC---cEEEEEE--ccceEEE------------------EeccccceEEEEee--ecce
Confidence            46778999999887754 34443   4566665  3433321                  25567777776653  4889


Q ss_pred             EEEEeCCCEEEEEEccCC-CcccceEEEc-ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe
Q 001362          411 LGVAYSKHIVQLYAYHGG-SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~-~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  488 (1092)
                      ++++..++.+.||+..++ +......++. ...+.|+++. +|.----.++.|+.+|.+.+|++++++.+++++++...|
T Consensus       127 lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~I  205 (910)
T KOG1539|consen  127 LIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRI  205 (910)
T ss_pred             EEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccce
Confidence            999999999999999884 2211111222 2222377664 554321147889999999999999999999999999999


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001362          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1092)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1092)
                      +++.-+|.-  ..++.|..+|+|.++++...+.+..+....+.|++++|..||..+.+.+.   ..|.+.+||++..+.+
T Consensus       206 T~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~  280 (910)
T KOG1539|consen  206 TAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLI  280 (910)
T ss_pred             eEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeee
Confidence            999876544  58999999999999999999999999988899999999999998776653   2567999999998888


Q ss_pred             EEEe-eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC--CCc--eEEEEeCCCCCCCCceEEEc-cCCCEEEEEeC
Q 001362          569 RTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQ--LLTTIDAGGGLPENPRICFN-KNGTLLAVIAN  642 (1092)
Q Consensus       569 ~~~~-~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~--~~~--~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~  642 (1092)
                      .... .|.   +.+....|.|....+++++.|+.+++|=.+  +|.  .+....  +|..+..++.|. .+|..+.+++.
T Consensus       281 ~v~~nah~---~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~irfy~~~g~~ilsa~~  355 (910)
T KOG1539|consen  281 NVTRNAHY---GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSCIRFYGSQGHFILSAKQ  355 (910)
T ss_pred             eeeecccc---CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchheeeeccCcEEEEeccc
Confidence            7776 444   889999999999999999999999988554  342  233333  445567889887 68999999999


Q ss_pred             CCeEEEEECCCCceeeeccc------------------ccCceeeeeecCCCccccccccCCceeecCCCCCCCccceee
Q 001362          643 ENRIKILETPESNSVDAAGV------------------LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV  704 (1092)
Q Consensus       643 dg~i~iw~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~  704 (1092)
                      |++++.+++.....-+.+..                  .-.+|..+++.....                 ....+.+...
T Consensus       356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE-----------------~~W~Nv~~~h  418 (910)
T KOG1539|consen  356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENARE-----------------KEWDNVITAH  418 (910)
T ss_pred             CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchh-----------------hhhcceeEEe
Confidence            99999988763311111110                  011122222210000                 1223344444


Q ss_pred             ccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCcccc
Q 001362          705 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ  784 (1092)
Q Consensus       705 ~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~  784 (1092)
                      -.+...+.|+......++...-.-+.......+.+++.++-|++.+.|.+.|.|.+|+++.+-.                
T Consensus       419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~----------------  482 (910)
T KOG1539|consen  419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH----------------  482 (910)
T ss_pred             cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee----------------
Confidence            4556788899876555433322222222456789999999999999999999999999876421                


Q ss_pred             CCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 001362          785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM  863 (1092)
Q Consensus       785 ~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~  863 (1092)
                            ...+- ..+.|..+|+.++...-++.+++++ +|.+.+||..+...+..+. -...++++..+. ...++|.+.
T Consensus       483 ------r~sf~-~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~  553 (910)
T KOG1539|consen  483 ------RKSFG-DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIAL  553 (910)
T ss_pred             ------ecccc-cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhhc
Confidence                  11110 1124899999999998888888887 8999999999888777776 446788888888 788999999


Q ss_pred             CCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEE
Q 001362          864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  943 (1092)
Q Consensus       864 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  943 (1092)
                      .|-.|+++|..+.+.++.+.||++.|++++|||||++|++++.|++|++||+.++.......+.         .+..++.
T Consensus       554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sls  624 (910)
T KOG1539|consen  554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSLS  624 (910)
T ss_pred             CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------CcceeeE
Confidence            9999999999999999999999999999999999999999999999999999997754432222         2578999


Q ss_pred             EecCCCEEEEEe-C-CcEEEEEcC
Q 001362          944 FHKDQTRFLLVH-E-THLAIYEAE  965 (1092)
Q Consensus       944 ~s~dg~~la~~~-d-~~i~lwd~~  965 (1092)
                      |||+|.+||+.. | ..|++|.-.
T Consensus       625 ~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  625 FSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             ECCCCCEEEEEEecCceEEEEEch
Confidence            999999999953 3 569999743

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.7e-37  Score=292.67  Aligned_cols=287  Identities=15%  Similarity=0.172  Sum_probs=265.4

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      +|+||.+.|.++.|++|+++|++++.||.+.|||.-+.....   .++-....|..++|+|.|+  ++++|+.|+...||
T Consensus        50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY  124 (343)
T ss_pred             EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence            388999999999999999999999999999999998865333   4556778899999999999  89999999999999


Q ss_pred             ECCCC------ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCCE
Q 001362          471 DAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR  543 (1092)
Q Consensus       471 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~  543 (1092)
                      ++.+.      +..+.+.+|.+.+.++.|..   ...|++++.|.+..+||++++.....+.+|.+.|.++.++| +++.
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence            99865      44577899999999999964   35899999999999999999999999999999999999999 9999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCC
Q 001362          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  623 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~  623 (1092)
                      +++|+-    +...++||++.+.++++|.+|+   ..|+++.|.|+|.-+++|++|++.|+||++..+.+..+.......
T Consensus       202 FvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~  274 (343)
T KOG0286|consen  202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC  274 (343)
T ss_pred             EEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence            999987    5669999999999999999999   999999999999999999999999999999999999998877778


Q ss_pred             CCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001362          624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1092)
Q Consensus       624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1092)
                      .|++++||..|++|++|..|..+.+||.-.++.+..+.+|.+.|.++..+                      |||..+++
T Consensus       275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----------------------~DG~av~T  332 (343)
T KOG0286|consen  275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----------------------PDGMAVAT  332 (343)
T ss_pred             CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----------------------CCCcEEEe
Confidence            89999999999999999999999999999999999999999999999996                      77888999


Q ss_pred             eccccccceec
Q 001362          704 VEAENKSEVEK  714 (1092)
Q Consensus       704 ~~~d~~i~lw~  714 (1092)
                      |+.|.++|||.
T Consensus       333 gSWDs~lriW~  343 (343)
T KOG0286|consen  333 GSWDSTLRIWA  343 (343)
T ss_pred             cchhHheeecC
Confidence            99999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1e-36  Score=283.39  Aligned_cols=293  Identities=17%  Similarity=0.276  Sum_probs=251.2

Q ss_pred             ceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEcc
Q 001362          347 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH  426 (1092)
Q Consensus       347 ~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~  426 (1092)
                      .-+|++++.|.+|++|...+|.+.++                   +....+.|+.+.+.||+++||+++... |++||+.
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~   69 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLN   69 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEEcc
Confidence            35899999999999999999999876                   334568899999999999999997665 9999999


Q ss_pred             CCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe
Q 001362          427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS  506 (1092)
Q Consensus       427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  506 (1092)
                      ++..- +..++.+|...|+++.|..||+  +++|||.||+++|||++...+.+.++ |..+|+++.++|  +..-|++|.
T Consensus        70 S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp--nQteLis~d  143 (311)
T KOG0315|consen   70 SNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP--NQTELISGD  143 (311)
T ss_pred             CCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC--CcceEEeec
Confidence            98754 5568999999999999999999  89999999999999999977777775 779999999976  446899999


Q ss_pred             cCCeEEEEEcCCCCceEEe-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe------EEEEEeeccccCC
Q 001362          507 VDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQLQHN  579 (1092)
Q Consensus       507 ~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~~~~~  579 (1092)
                      .+|.|++||+........+ ......|.+++..|||.+++.+..    .+..++|++-++.      .+..++.|.   +
T Consensus       144 qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~---~  216 (311)
T KOG0315|consen  144 QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN---G  216 (311)
T ss_pred             CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc---c
Confidence            9999999999988665544 334568999999999999998865    6679999987653      344566666   8


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeee
Q 001362          580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA  659 (1092)
Q Consensus       580 ~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~  659 (1092)
                      .+..+.++|++++|+++|.|.+++||+.++. ....+...++...+..++||.||++|++++.|+..++|++..++.+..
T Consensus       217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q  295 (311)
T KOG0315|consen  217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ  295 (311)
T ss_pred             eEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence            8999999999999999999999999999988 333333344456799999999999999999999999999999999999


Q ss_pred             cccccCceeeeeec
Q 001362          660 AGVLSDNLRKLSVN  673 (1092)
Q Consensus       660 ~~~~~~~v~~~~~~  673 (1092)
                      ..+|.....|++..
T Consensus       296 y~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  296 YQGHHKAAVCVALN  309 (311)
T ss_pred             cCCcccccEEEEee
Confidence            99998887777654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.6e-37  Score=331.14  Aligned_cols=277  Identities=18%  Similarity=0.262  Sum_probs=242.1

Q ss_pred             ccCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeE--------Eeeeeeee----cccccce
Q 001362          319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF--------IRNFKVWD----IGACSML  386 (1092)
Q Consensus       319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~--------~~~~~~~d----~~~~~~~  386 (1092)
                      ...+|.-|..++..-...++|..||+|++ +||.|-.|..|++|.+...+...        ......-|    +..-...
T Consensus       363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~  441 (707)
T KOG0263|consen  363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS  441 (707)
T ss_pred             CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence            56788889988887777999999999998 89999999999999998533211        00000001    1111122


Q ss_pred             eeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc
Q 001362          387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT  466 (1092)
Q Consensus       387 ~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~  466 (1092)
                      .....+.||+++|..+.|+|+.++|++++.|++|++|.+.+..++-   ..+||..+|+++.|+|-|-  +++|+|.|++
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t  516 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT  516 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence            2334589999999999999999999999999999999999976554   6789999999999999998  8999999999


Q ss_pred             EEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001362          467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  546 (1092)
Q Consensus       467 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1092)
                      .++|......+++.+.+|-..|.|+.|+|  +..++++||.|.++|+||..++..+..+.+|.++|.+++|||+|++|++
T Consensus       517 ArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS  594 (707)
T KOG0263|consen  517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS  594 (707)
T ss_pred             eeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence            99999999999999999999999999977  5579999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001362          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  610 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~  610 (1092)
                      ++.    ++.|.+||+.+++.+..+.+|.   +.|.++.|+.+|..|++|+.|.+|++||+..-
T Consensus       595 g~e----d~~I~iWDl~~~~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  595 GDE----DGLIKIWDLANGSLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             ccc----CCcEEEEEcCCCcchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            976    6779999999999999999997   99999999999999999999999999998753

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-34  Score=302.89  Aligned_cols=465  Identities=15%  Similarity=0.205  Sum_probs=345.1

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +..|+..|.++.|+|....++++-.+|.|.|||.++...++   .+.-..-+|.++.|-+--+  ++++|+.|..|+||+
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN   83 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence            34488999999999999999999999999999999987777   5666778999999998877  899999999999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEcc-CCCEEEEEec
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT  549 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~  549 (1092)
                      ..+++.++.|..|.+.|.+++.+|..  .+++++|.|-+|++||++.. .+..++.+|.+-|..++|.| |.+.+++++-
T Consensus        84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence            99999999999999999999998754  79999999999999999875 45778999999999999999 5678888887


Q ss_pred             CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001362          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                          +++|.+|.+.+..+..++.+|.   ..|+++.+-+-  ..++++|++|.+++|||..+..+++++.+|.+  .|..
T Consensus       162 ----DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~  232 (794)
T KOG0276|consen  162 ----DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSF  232 (794)
T ss_pred             ----cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceE
Confidence                6679999999999999999999   89999999764  47999999999999999999999999997755  6999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001362          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      ++|+|.-..+++|+.||+++||+..+-+....+.-.-+.                                         
T Consensus       233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleR-----------------------------------------  271 (794)
T KOG0276|consen  233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLER-----------------------------------------  271 (794)
T ss_pred             EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCce-----------------------------------------
Confidence            999999999999999999999998876554444433333                                         


Q ss_pred             cccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCC
Q 001362          708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH  787 (1092)
Q Consensus       708 ~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~  787 (1092)
                                                   +.+++..+.+..++.|..+|.+.+=                          
T Consensus       272 -----------------------------vW~I~~~k~~~~i~vG~Deg~i~v~--------------------------  296 (794)
T KOG0276|consen  272 -----------------------------VWCIAAHKGDGKIAVGFDEGSVTVK--------------------------  296 (794)
T ss_pred             -----------------------------EEEEeecCCCCeEEEeccCCcEEEE--------------------------
Confidence                                         4444444444445555555544430                          


Q ss_pred             CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC--CeEEEE------EcCCceeeE----EecCCCCCeEEEEEcCCC
Q 001362          788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--GVISLY------IVMTFKTIL----TIMPPSPTATSLAFNPHD  855 (1092)
Q Consensus       788 g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd--g~i~iw------d~~~~~~~~----~~~~~~~~i~~l~~s~~d  855 (1092)
                                   -......+..++.|+.+-+...  -.+.+-      ++..|+.+.    .+....-....++.+| +
T Consensus       297 -------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-N  362 (794)
T KOG0276|consen  297 -------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-N  362 (794)
T ss_pred             -------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-C
Confidence                         0111122333344433322211  011111      233333221    1111111234678899 8


Q ss_pred             CCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001362          856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  935 (1092)
Q Consensus       856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  935 (1092)
                      |+++++++ ||.-.||..-.-+     ..+-+.-....|++|.+..|.--.++.|+++  +..+.     .+....    
T Consensus       363 GrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke-----~ksi~~----  425 (794)
T KOG0276|consen  363 GRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKE-----HKSIRP----  425 (794)
T ss_pred             CcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--eccee-----cccccc----
Confidence            98877655 8888888643211     1244556778999998888888888889988  33221     111111    


Q ss_pred             CCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001362          936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       936 ~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
                         -..+.+--.|.+|.+..++.+++||..+++.++.+-.    ....+.|+.+|.+++.++.| +.++..+
T Consensus       426 ---~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v----~~k~v~w~d~g~lVai~~d~-Sfyil~~  489 (794)
T KOG0276|consen  426 ---DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV----TSKHVYWSDNGELVAIAGDD-SFYILKF  489 (794)
T ss_pred             ---ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee----ccceeEEecCCCEEEEEecC-ceeEEEe
Confidence               1113334456777778899999999999999987532    35578999999988888755 4455543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.6e-36  Score=282.88  Aligned_cols=296  Identities=17%  Similarity=0.185  Sum_probs=249.9

Q ss_pred             ccccccEEEEEEecC-CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001362          731 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA  809 (1092)
Q Consensus       731 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~  809 (1092)
                      .+|.+.|..++..+. ...++.++.|..+.+|++...                 |...|.....  +.  +|...|..++
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~--~~--GHsH~v~dv~   70 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR--LT--GHSHFVSDVV   70 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee--ee--ccceEecceE
Confidence            459999999999887 556778888999999998764                 2334443333  33  4999999999


Q ss_pred             EecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc-ccC
Q 001362          810 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSK  887 (1092)
Q Consensus       810 ~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~  887 (1092)
                      .++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|++|++|+...........+ |++
T Consensus        71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~  149 (315)
T KOG0279|consen   71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE  149 (315)
T ss_pred             EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence            999999999998 89999999999999999999999999999999 899999999999999999986544444333 388


Q ss_pred             CeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEc
Q 001362          888 RVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEA  964 (1092)
Q Consensus       888 ~V~~l~~spd--g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~  964 (1092)
                      -|.|+.|+|+  ..+++++|.|++|++||+.+     .+..+.+.+|..   .++.+++||||.+.+. +.||.+.+||+
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----~~l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~LwdL  221 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----CQLRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWDL  221 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----cchhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEEc
Confidence            9999999998  78999999999999999998     446666777765   8999999999999999 68999999999


Q ss_pred             CCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCC
Q 001362          965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1044 (1092)
Q Consensus       965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~ 1044 (1092)
                      ..++.+..  .+|...|.+++|+|+.-+|+.+ .+..|+|||++++..+..+.+...-+ ....+.+.+++++|++ ||.
T Consensus       222 ~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG~  296 (315)
T KOG0279|consen  222 NEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DGQ  296 (315)
T ss_pred             cCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CCc
Confidence            99999765  3588999999999998777655 56679999999999988877544333 2234567778999998 699


Q ss_pred             EEEEEeCCCcEEEEeCC
Q 001362         1045 QFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1045 ~l~~~~~dg~v~~w~~~ 1061 (1092)
                      .|++|..|+.|++|.+.
T Consensus       297 tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  297 TLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEEeeecCCcEEEEEee
Confidence            99999999999999984

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-34  Score=311.78  Aligned_cols=584  Identities=16%  Similarity=0.230  Sum_probs=405.0

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001362          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  410 (1092)
                      ...+..|-.++|+|... .+.++-..|.|.+||..-+.++..                   +.+|.++|..++|+|++.+
T Consensus         6 EskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qpl   65 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPL   65 (1202)
T ss_pred             hcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCe
Confidence            44566899999999998 567777889999999999988875                   6789999999999999999


Q ss_pred             EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEE
Q 001362          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS  490 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~  490 (1092)
                      +++|++|..|+||+..+.+++.   ++.||-..|..+.|++.-.  +++|+|.|.+|+||++.+++++..+.||...|.|
T Consensus        66 FVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMc  140 (1202)
T KOG0292|consen   66 FVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMC  140 (1202)
T ss_pred             EEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEe
Confidence            9999999999999999987766   7889999999999999877  8999999999999999999999999999999999


Q ss_pred             EeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001362          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT  570 (1092)
Q Consensus       491 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  570 (1092)
                      ..|+|+.  ..++|+|-|.+||+||+...+....-.+      ++.-...+..+.           .-++-...--....
T Consensus       141 AqFhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~V  201 (1202)
T KOG0292|consen  141 AQFHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKHV  201 (1202)
T ss_pred             eccCCcc--ceEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeeee
Confidence            9998876  4899999999999999976544332221      010001111110           00111111223456


Q ss_pred             EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001362          571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE  650 (1092)
Q Consensus       571 ~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~  650 (1092)
                      +.||.   ..|+-++|+|.-..+++|++|..|++|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||
T Consensus       202 LEGHD---RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  202 LEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             ecccc---cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence            78888   899999999999999999999999999987655444444456677899999999999999999999999999


Q ss_pred             CCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCC-----CCCCccceeeccccccceeccccccCccccc
Q 001362          651 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-----KEDVKPEISVEAENKSEVEKPLFARPSECQS  725 (1092)
Q Consensus       651 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~  725 (1092)
                      +...+.++.++...+..+.++..|.....+.|-..|-+.|.-+.     .-.++.+.-.- |..|+-+|+.+........
T Consensus       279 m~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~  357 (1202)
T KOG0292|consen  279 MTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVAS  357 (1202)
T ss_pred             cccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccccccceeEe
Confidence            99999999999999999999999999999999999988884332     22344443333 7788889887765555555


Q ss_pred             cccCCccccccEEEEEEecCCcEEEEee--cCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCC
Q 001362          726 LLLPSKVKANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE  803 (1092)
Q Consensus       726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~--~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~  803 (1092)
                      +..+.. ...++.++.++|....++.++  .+|...++.++.........            ...       .    ...
T Consensus       358 lr~~g~-~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~------------~~~-------~----k~t  413 (1202)
T KOG0292|consen  358 LRRPGT-LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG------------KDV-------K----KGT  413 (1202)
T ss_pred             ccCCCc-ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc------------hhh-------h----cCC
Confidence            443332 235678899999776555553  34777777766542110000            000       0    111


Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec
Q 001362          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE  883 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~  883 (1092)
                      ....+-.+.++-.+..-++..+.+-++.. +..+.+... ..+..+-+.- .|.+|+.  ....|.+||++..+.+..+.
T Consensus       414 G~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~  488 (1202)
T KOG0292|consen  414 GEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK  488 (1202)
T ss_pred             CCceEEEEecceEEEEecCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe
Confidence            22233333332222222234444444432 222222211 2333444444 5655553  34579999999888777776


Q ss_pred             cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEE
Q 001362          884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE  963 (1092)
Q Consensus       884 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd  963 (1092)
                        ...|.-+.||+|..++|--+. .+|.|.+.+-.      .+.......    .|.+-+|..+|-+|.+..+.- + |-
T Consensus       489 --~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL~------l~~sihEti----riksgawde~gVfiYtT~nHi-k-Ya  553 (1202)
T KOG0292|consen  489 --VSKVKYVVWSNDMSRVALLSK-HTITIADKKLE------LLCSIHETI----RIKSGAWDEDGVFIYTTLNHI-K-YA  553 (1202)
T ss_pred             --cCceeEEEEcCccchhhhccc-ceEEEEecchh------heecchhee----EeeeceeccCceEEEEehhhh-h-hh
Confidence              467899999999988887765 45888876541      222222222    477788888888877643211 0 11


Q ss_pred             cCCce--eeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCce
Q 001362          964 AEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus       964 ~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
                      +.+|.  .+++ +   ..++.-  +--.|..++.-..|+.++..+++.-+.
T Consensus       554 l~~GD~GIikT-L---d~~iyi--tkv~gn~V~cl~rd~~~~~~~IDptEy  598 (1202)
T KOG0292|consen  554 LENGDSGIIKT-L---DKPIYI--TKVKGNKVFCLNRDGEIECLTIDPTEY  598 (1202)
T ss_pred             hccCCcceEEe-c---ccceEE--EEeeCCEEEEEecCCCeEEEeechHHH
Confidence            11111  1111 0   112221  223577777777888888888776443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-36  Score=296.52  Aligned_cols=292  Identities=22%  Similarity=0.330  Sum_probs=267.8

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ...+.|.||...|+.+-|+|+-. +.++++.|++|++||..+|+....                   |.||...|..++|
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~  158 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF  158 (406)
T ss_pred             CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence            56678899999999999999997 899999999999999999998765                   8899999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      +..|++||+++.|-.+++||.++-  .++...+.+|...|.+++|-|.|.  ++++++.|.+|+.|+..+|.++++|.+|
T Consensus       159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h  234 (406)
T KOG0295|consen  159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH  234 (406)
T ss_pred             ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence            999999999999999999999863  233336779999999999999998  8999999999999999999999999999


Q ss_pred             CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC---------------CEEEEEec
Q 001362          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------------RRLFSCGT  549 (1092)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg---------------~~l~~~~~  549 (1092)
                      ...|..+..  ..||.++++++.|.++++|-+.+..+...+..|+.+|.+++|.|..               .++.+++.
T Consensus       235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr  312 (406)
T KOG0295|consen  235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR  312 (406)
T ss_pred             hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence            999998887  6689999999999999999999999999999999999999997742               36666654


Q ss_pred             CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001362          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1092)
                          |++|++||+.+|.++.++.+|.   +.|..++|+|.|++|+++.+|+++++||+.+++++..+..|.+  .++++.
T Consensus       313 ----DktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lD  383 (406)
T KOG0295|consen  313 ----DKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLD  383 (406)
T ss_pred             ----cceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEe
Confidence                7789999999999999999999   9999999999999999999999999999999999999997766  489999


Q ss_pred             EccCCCEEEEEeCCCeEEEEEC
Q 001362          630 FNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       630 ~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      |+.+..++++|+-|.++++|..
T Consensus       384 fh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  384 FHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             cCCCCceEEeccccceeeeeec
Confidence            9999999999999999999974

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=1.2e-32  Score=281.19  Aligned_cols=537  Identities=12%  Similarity=0.159  Sum_probs=382.5

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      +-..-++|+. -=..+-+-|.|..+...+   +.+.+++++......                    +.||+..|.|++.
T Consensus        57 ewvygYRG~d-cR~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~v  112 (626)
T KOG2106|consen   57 EWVYGYRGVD-CRNNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMAV  112 (626)
T ss_pred             EEEEeeccee-eeceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEee
Confidence            4445566664 223456778887443443   456777776533222                    6789999999999


Q ss_pred             CCCCCEEEEEeCCC--------EEEEEEccCCCcccceEEEcccccceeEEEEecCC--CcEEEEEEeCCCcEEEEECCC
Q 001362          405 SPDGSLLGVAYSKH--------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC--KQISVITCGDDKTIKVWDAVT  474 (1092)
Q Consensus       405 spdg~~las~~~d~--------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~--~~l~l~s~~~d~~i~vwd~~~  474 (1092)
                      +||--.+|+|-..|        .++|||..+-..+   ..+......|.|++||+-.  ..+..+--+.+..+.|||+..
T Consensus       113 HPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL---~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk  189 (626)
T KOG2106|consen  113 HPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTL---HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQK  189 (626)
T ss_pred             cCCceeeccCcccccCCCcCCCeeeecccccceee---eeeccccccceeeeecccCCCceEEEecCCCccccchhhchh
Confidence            99999999874333        5999998764433   3566667789999999853  322233345667899999999


Q ss_pred             CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE---ecC-CCCceEEEEEccCCCEEEEEecC
Q 001362          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDA-PGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~-~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      +......+.....|....|+|...  -++.....|.+.+|+++.+.....   +.. ...-|.+++|.++|..+ ++   
T Consensus       190 ~~~~~~vk~sne~v~~a~FHPtd~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi-Tg---  263 (626)
T KOG2106|consen  190 KAKLGPVKTSNEVVFLATFHPTDP--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI-TG---  263 (626)
T ss_pred             hhccCcceeccceEEEEEeccCCC--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEE-ee---
Confidence            998888888888899999988753  344555578999999987765442   222 22579999999999865 33   


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001362          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                       +.++.|.+|+..+.+..+....|.   +.|.+++...+|. |++|+.|..|..|| ..-+.++..+.+.....+..++=
T Consensus       264 -DS~G~i~Iw~~~~~~~~k~~~aH~---ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e  337 (626)
T KOG2106|consen  264 -DSGGNILIWSKGTNRISKQVHAHD---GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAE  337 (626)
T ss_pred             -cCCceEEEEeCCCceEEeEeeecC---CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEec
Confidence             347789999998887777766666   9999999999986 55699999999999 55555555555555455665553


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccccc
Q 001362          631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  710 (1092)
Q Consensus       631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i  710 (1092)
                      ...+  +++|+..+.|.-=.+.++-.+.                                                    
T Consensus       338 ~~~d--i~vGTtrN~iL~Gt~~~~f~~~----------------------------------------------------  363 (626)
T KOG2106|consen  338 GKGD--ILVGTTRNFILQGTLENGFTLT----------------------------------------------------  363 (626)
T ss_pred             CCCc--EEEeeccceEEEeeecCCceEE----------------------------------------------------
Confidence            3222  6666665555433333221110                                                    


Q ss_pred             ceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCc
Q 001362          711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ  790 (1092)
Q Consensus       711 ~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~  790 (1092)
                                         ..+|......++..|+...+++++.|+.+++|+ . .+             .+|...    
T Consensus       364 -------------------v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k-------------~~wt~~----  405 (626)
T KOG2106|consen  364 -------------------VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HK-------------LEWTKI----  405 (626)
T ss_pred             -------------------EEecccceeeEEcCCChhheeeccCcceEEEcc-C-Cc-------------eeEEEE----
Confidence                               123666777888888888899999999999987 1 11             112211    


Q ss_pred             eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 001362          791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL  869 (1092)
Q Consensus       791 ~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~  869 (1092)
                                -..+..|+.|+|.| .+|.|. .|...+.|+++...+..-.. ..++++++|+| +|.+||+|+.|+.|+
T Consensus       406 ----------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~iy  472 (626)
T KOG2106|consen  406 ----------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNHIY  472 (626)
T ss_pred             ----------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCeEE
Confidence                      35678899999999 888887 69999999999665554444 78999999999 999999999999999


Q ss_pred             EEEcCCce-eeEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeee---------ee---eecCCCCcCC
Q 001362          870 IYNARSSE-VISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC---------RS---LQTPDGVMTL  935 (1092)
Q Consensus       870 iwd~~~~~-~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~---------~~---~~~~~~~~~~  935 (1092)
                      ||.+.... ...+.. .|..+|+.+.||+|+++|.+-+.|-.|..|.-..-+....         .+   +....+  ..
T Consensus       473 iy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~--s~  550 (626)
T KOG2106|consen  473 IYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGG--SD  550 (626)
T ss_pred             EEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecc--cC
Confidence            99987643 333222 2448999999999999999999999999994332111110         00   111111  11


Q ss_pred             CCCceEEEEecCCCEEEEEeC-CcEEEEEcCCce--eeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001362          936 APSETHIQFHKDQTRFLLVHE-THLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       936 ~~~v~~l~~s~dg~~la~~~d-~~i~lwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
                      ...|..++-+...+++|++.| |+|++|...-.+  .....+.+|++-|++++|+.+..++++.+.|.+|..|++
T Consensus       551 ~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  551 GTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             CchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            235677778888899999754 899999876333  233346789999999999999999999889999999986

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.1e-35  Score=288.18  Aligned_cols=335  Identities=15%  Similarity=0.190  Sum_probs=290.3

Q ss_pred             cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ...+.++..|++.|.+++.+|+.+ ++|||+.|....||+..+|+....                   +.+|+..|+++.
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~  113 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCS  113 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEE
Confidence            345688999999999999999776 899999999999999999997765                   889999999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001362          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  483 (1092)
                      ||.||.+||+|+.+|.|+||+..++....   .+......|.-+.|+|-+.  +|+.|+.||.+.+|.+.++...+.+.|
T Consensus       114 FshdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~G  188 (399)
T KOG0296|consen  114 FSHDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSG  188 (399)
T ss_pred             EccCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecC
Confidence            99999999999999999999999987555   4545666788999999988  899999999999999999888999999


Q ss_pred             CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-CCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001362          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      |..++++=.|.|  +|+.++++..||+|++|+..+..+...+... .....++.++..+..++.|..    ++.+++.+.
T Consensus       189 h~~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~  262 (399)
T KOG0296|consen  189 HNSPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNN  262 (399)
T ss_pred             CCCCcccccccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEcc
Confidence            999999999955  6899999999999999999999988877643 345678889999999988865    556888888


Q ss_pred             CCCeEEEEEee--------ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001362          563 SEGAIKRTYQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       563 ~~~~~~~~~~~--------~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      .+|+.+....+        +......|.++.++..-+..++|+.||+|.|||+...++.......   ..|..+.|-+ .
T Consensus       263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he---~~V~~l~w~~-t  338 (399)
T KOG0296|consen  263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHE---DGVTKLKWLN-T  338 (399)
T ss_pred             ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCC---CceEEEEEcC-c
Confidence            88888877663        2312234555566666678899999999999999988777776554   3489999998 8


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceec
Q 001362          635 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK  714 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~  714 (1092)
                      .+|++++.+|.|+.||.++++......+|...|.+++++                      |+++++++++.|++.++|+
T Consensus       339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  339 DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             chheeeccCceEEeeeccccceEEEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEe
Confidence            899999999999999999999999999999999999996                      7889999999999999987


Q ss_pred             c
Q 001362          715 P  715 (1092)
Q Consensus       715 ~  715 (1092)
                      .
T Consensus       397 v  397 (399)
T KOG0296|consen  397 V  397 (399)
T ss_pred             c
Confidence            5

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2e-34  Score=283.33  Aligned_cols=339  Identities=18%  Similarity=0.230  Sum_probs=286.7

Q ss_pred             EEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEE
Q 001362          436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL  515 (1092)
Q Consensus       436 ~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd  515 (1092)
                      +|..|+..|.+++.+|+.+  +++||+.|....+|++.+|..+..+.+|...|+++.|+  .+|.+|++|+.+|.|+||+
T Consensus        59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--hdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--HDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEc--cCceEEEecCCCccEEEEE
Confidence            6889999999999999777  89999999999999999999999999999999999994  5789999999999999999


Q ss_pred             cCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE
Q 001362          516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA  595 (1092)
Q Consensus       516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  595 (1092)
                      ..++.....+......+.-+.|+|.+..|++|+.    ++.+.+|.+.++...+.+.||.   .++++-.|.|+|+.+++
T Consensus       135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT  207 (399)
T ss_pred             cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence            9999999988878888999999999999999876    5669999999988889999988   89999999999999999


Q ss_pred             EeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCC
Q 001362          596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI  675 (1092)
Q Consensus       596 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~  675 (1092)
                      +..||+|++|++.+++++..+....+ ....++.++..+..++.|..++.+.+-+..+++.+....+             
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~-------------  273 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG-------------  273 (399)
T ss_pred             EecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence            99999999999999999998875543 3567899999999999999988887766555432221110             


Q ss_pred             CccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC
Q 001362          676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN  755 (1092)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  755 (1092)
                                                                                           .+..+....  
T Consensus       274 ---------------------------------------------------------------------~~~~l~~~~--  282 (399)
T KOG0296|consen  274 ---------------------------------------------------------------------TVPELKPSQ--  282 (399)
T ss_pred             ---------------------------------------------------------------------CCccccccc--
Confidence                                                                                 000000000  


Q ss_pred             CeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCce
Q 001362          756 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK  834 (1092)
Q Consensus       756 g~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~  834 (1092)
                                                                 ......|..+.++..-.+.|+|+ ||+|.|||+.+.+
T Consensus       283 -------------------------------------------e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~  319 (399)
T KOG0296|consen  283 -------------------------------------------EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST  319 (399)
T ss_pred             -------------------------------------------hhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence                                                       00122334445555666778888 8999999998877


Q ss_pred             eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001362          835 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1092)
Q Consensus       835 ~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd  914 (1092)
                      ....+. |...|+.+.|-+  ..+|++++.+|.|+.||.++|+++..+.||..+|.+++++|+.++++|+|.|++.+|++
T Consensus       320 ~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  320 LRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             hheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            665555 888899999987  56899999999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 001362          915 VD  916 (1092)
Q Consensus       915 ~~  916 (1092)
                      +.
T Consensus       397 v~  398 (399)
T KOG0296|consen  397 VP  398 (399)
T ss_pred             cC
Confidence            75

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.9e-35  Score=288.73  Aligned_cols=299  Identities=18%  Similarity=0.255  Sum_probs=268.7

Q ss_pred             cCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001362          320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1092)
Q Consensus       320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V  399 (1092)
                      +..|-.+.+.+.||-+.|.|+++.|-.. ++++|+.|++|+|||+.+|++..+                   +.||-..|
T Consensus       137 WHapwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~v  196 (460)
T KOG0285|consen  137 WHAPWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETV  196 (460)
T ss_pred             ccCcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhhee
Confidence            4455677889999999999999999987 799999999999999999998876                   88999999


Q ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001362          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      ..+++|+--.||.+++.|+.|+.||++..+.++   .+.||-..|.|++..|.-.  .|++|+.|.+++|||+++...+.
T Consensus       197 r~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~  271 (460)
T KOG0285|consen  197 RGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVH  271 (460)
T ss_pred             eeeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEE
Confidence            999999999999999999999999999998887   5779999999999999988  89999999999999999999999


Q ss_pred             EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001362          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                      .+.||..+|.++.+.+.  ...+++|+.|++|++||+..++....+..|...+.+++.+|....+++++.+     .|..
T Consensus       272 ~l~GH~~~V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----nik~  344 (460)
T KOG0285|consen  272 VLSGHTNPVASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NIKQ  344 (460)
T ss_pred             EecCCCCcceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----ccee
Confidence            99999999999988654  3579999999999999999999999999999999999999999999998753     4999


Q ss_pred             EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe---CCC---CCCCCceEEEccC
Q 001362          560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGG---GLPENPRICFNKN  633 (1092)
Q Consensus       560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s~~  633 (1092)
                      |++..|..+..+.+|.   ..+.+++.+.|+ ++++|+++|.+.+||.++|-..+...   .++   ....|.+.+|...
T Consensus       345 w~~p~g~f~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDkt  420 (460)
T KOG0285|consen  345 WKLPEGEFLQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKT  420 (460)
T ss_pred             ccCCccchhhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeeccc
Confidence            9999999999998888   889999998875 88999999999999999986655442   221   2245889999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCC
Q 001362          634 GTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       634 ~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      |..|++|..|.+|++|.-.+.
T Consensus       421 g~rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  421 GSRLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             CceEEeccCCcceEEEecccc
Confidence            999999999999999986643

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.6e-34  Score=266.45  Aligned_cols=295  Identities=17%  Similarity=0.253  Sum_probs=252.1

Q ss_pred             cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeecccc
Q 001362          500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQ  577 (1092)
Q Consensus       500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~  577 (1092)
                      -+|++++.|.+||+|...++.+..++......|..+.+.||++.|++++     ...|++||+++++  .+.++.+|.  
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~--   83 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT--   83 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC--
Confidence            4899999999999999999999999999999999999999999999987     4459999999775  588899988  


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCcee
Q 001362          578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV  657 (1092)
Q Consensus       578 ~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  657 (1092)
                       ..|.++.|..+|+++++||+||+++|||++...+...+...   ..|+++..+|+...|+++..+|.|++||+.+....
T Consensus        84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~  159 (311)
T KOG0315|consen   84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT  159 (311)
T ss_pred             -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence             89999999999999999999999999999996666666543   56999999999999999999999999999865332


Q ss_pred             eecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccE
Q 001362          658 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI  737 (1092)
Q Consensus       658 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i  737 (1092)
                      ..+-                                                                   |.  ....|
T Consensus       160 ~~li-------------------------------------------------------------------Pe--~~~~i  170 (311)
T KOG0315|consen  160 HELI-------------------------------------------------------------------PE--DDTSI  170 (311)
T ss_pred             cccC-------------------------------------------------------------------CC--CCcce
Confidence            2111                                                                   11  33568


Q ss_pred             EEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEE
Q 001362          738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL  817 (1092)
Q Consensus       738 ~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l  817 (1092)
                      .++++.|||.+++++...|..++|++.....                 .+.. .....+  +.|...+..+.+|||+++|
T Consensus       171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l-~P~~k~--~ah~~~il~C~lSPd~k~l  230 (311)
T KOG0315|consen  171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASEL-EPVHKF--QAHNGHILRCLLSPDVKYL  230 (311)
T ss_pred             eeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccc-eEhhhe--ecccceEEEEEECCCCcEE
Confidence            8999999999999999999999999865321                 0000 000111  2489999999999999999


Q ss_pred             EEEe-CCeEEEEEcCCc-eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEc
Q 001362          818 FSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS  895 (1092)
Q Consensus       818 ~~~s-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s  895 (1092)
                      |+++ |.+++||+.++. +....+.+|...+..++||. |++||++|+.|+.+++|++..++.+....+|..+..|++..
T Consensus       231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             EeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            9998 799999999988 66778899999999999999 99999999999999999999999999999999988888764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1e-33  Score=267.28  Aligned_cols=292  Identities=22%  Similarity=0.334  Sum_probs=240.8

Q ss_pred             eeeecccCCCCceEEeecCC-CceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          326 VAQTLIEGSSSPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spd-g~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ..+.+++|++.|+.+||+|- |. +||+|+.|+.|+||+...+.-...               +..+-.+|+..|.++||
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw   69 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW   69 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence            45789999999999999999 76 899999999999999986433221               22234579999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC---ceeEEE
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSF  481 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~  481 (1092)
                      +|.|++||+++.|.++.||.-..++ .....++.||...|.|++|+++|.  +|++|+.|++|-||.+..+   +++..+
T Consensus        70 sp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL  146 (312)
T KOG0645|consen   70 SPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL  146 (312)
T ss_pred             cCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence            9999999999999999999988654 455668999999999999999999  8999999999999998754   567888


Q ss_pred             ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001362          482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1092)
                      +.|...|..+.|+|+.  .+|++++.|.+|++|+-...   .+..++.++...|.+++|++.|..|++++.    +++++
T Consensus       147 ~~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~  220 (312)
T KOG0645|consen  147 QEHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS  220 (312)
T ss_pred             ccccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence            9999999999999876  49999999999999976632   357788999999999999999999999975    67799


Q ss_pred             EEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------eEEEEeCCCCCCCCceEEEcc
Q 001362          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      +|-..+     .+.+  .+...++.+.|.  ...|++++.|+.|++|.-...-      .+... .+.+...|+++.|+|
T Consensus       221 Iw~~~~-----~~~~--~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p  290 (312)
T KOG0645|consen  221 IWRLYT-----DLSG--MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNP  290 (312)
T ss_pred             eeeecc-----Ccch--hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcC
Confidence            997542     1222  124788999998  4679999999999999765421      11111 123345799999999


Q ss_pred             C-CCEEEEEeCCCeEEEEECC
Q 001362          633 N-GTLLAVIANENRIKILETP  652 (1092)
Q Consensus       633 ~-~~~l~~~~~dg~i~iw~~~  652 (1092)
                      . .++|+++++||.+++|.+.
T Consensus       291 ~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  291 KVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCCceeecCCCceEEEEEec
Confidence            4 7899999999999999864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.1e-33  Score=287.05  Aligned_cols=279  Identities=19%  Similarity=0.300  Sum_probs=252.4

Q ss_pred             CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..|++++|+.+|. +||+|+.||.++||+...+ ++.+                   +..|+++|.++.|+.+|.||+++
T Consensus       236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~-l~~t-------------------l~~HkgPI~slKWnk~G~yilS~  294 (524)
T KOG0273|consen  236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKDGN-LIST-------------------LGQHKGPIFSLKWNKKGTYILSG  294 (524)
T ss_pred             CCcceEEecCCCC-eEEEeecCcEEEEEecCch-hhhh-------------------hhccCCceEEEEEcCCCCEEEec
Confidence            4899999999998 8999999999999997654 4433                   66799999999999999999999


Q ss_pred             eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeec
Q 001362          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  494 (1092)
                      +.|+++.+||..+|+..+   .+.-|..+-..+.|-.+..   +++++.|+.|+|+-+...+++.++.+|.++|.++.|.
T Consensus       295 ~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n  368 (524)
T KOG0273|consen  295 GVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN  368 (524)
T ss_pred             cCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence            999999999999987665   4556888777889987776   9999999999999999999999999999999999995


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC---------CEEEEEecCCCCceeEEEEeCCCC
Q 001362          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------RRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg---------~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      +  .+.+|++++.|+++++|..........+..|...|..+.|+|+|         ..+++++.    +++|++||...+
T Consensus       369 ~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~g  442 (524)
T KOG0273|consen  369 P--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESG  442 (524)
T ss_pred             C--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCC
Confidence            5  56899999999999999999888899999999999999999965         35777765    778999999999


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001362          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  645 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  645 (1092)
                      .++..|..|.   .+|++++|+|++.++++|+.||.|.+|+..+++..+.....+   .|..++|+.+|..+.++..|+.
T Consensus       443 v~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~  516 (524)
T KOG0273|consen  443 VPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS  516 (524)
T ss_pred             ceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence            9999999988   999999999999999999999999999999999999987654   4899999999999999999999


Q ss_pred             EEEEECC
Q 001362          646 IKILETP  652 (1092)
Q Consensus       646 i~iw~~~  652 (1092)
                      +.+.|+.
T Consensus       517 vcvldlr  523 (524)
T KOG0273|consen  517 VCVLDLR  523 (524)
T ss_pred             ceEEEec
Confidence            9998864

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=3.8e-31  Score=270.20  Aligned_cols=523  Identities=14%  Similarity=0.195  Sum_probs=375.0

Q ss_pred             EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC--------cEEEEEC
Q 001362          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------TIKVWDA  472 (1092)
Q Consensus       401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--------~i~vwd~  472 (1092)
                      .+-+-|.|..+....  +.+.+++++...+.    .+.+|...|.|++.+||--  .+++|-.-|        .+++||.
T Consensus        70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds  141 (626)
T KOG2106|consen   70 NLYLLPTGELVYFVA--AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS  141 (626)
T ss_pred             eeEEccCccEEEEec--cEEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence            356778887776543  34566776553211    3669999999999999865  566554333        5999999


Q ss_pred             CCCceeEEEecCCcCeEEEeecccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE-EEEec
Q 001362          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL-FSCGT  549 (1092)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l-~~~~~  549 (1092)
                      .+-..++.+......|.+++|++...|.++....  .+..+.+||+..+............+....|.|.+..+ ++++ 
T Consensus       142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-  220 (626)
T KOG2106|consen  142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-  220 (626)
T ss_pred             ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence            9988899888888899999999887777766653  45568999999888777777777788899999966554 4554 


Q ss_pred             CCCCceeEEEEeCCCCeEEEE---EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001362          550 SKEGESFLVEWNESEGAIKRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  626 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  626 (1092)
                          .+.++.|+.+.+...++   +..+.  ...|.+++|.++|. +++|..+|.|.||+..+.+..+....|  ...|.
T Consensus       221 ----k~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~  291 (626)
T KOG2106|consen  221 ----KGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAH--DGGVF  291 (626)
T ss_pred             ----CceEEEEEccCCceEEEeecccccc--ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeec--CCceE
Confidence                67799999998876654   44444  46799999999875 889999999999999887777766644  44689


Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecc
Q 001362          627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  706 (1092)
Q Consensus       627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~  706 (1092)
                      +++.-.+|.+|- |+.|..|..||-. -+..+...                                             
T Consensus       292 ~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~e---------------------------------------------  324 (626)
T KOG2106|consen  292 SLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETE---------------------------------------------  324 (626)
T ss_pred             EEEEecCccEee-cCccceEEecccc-cccccccc---------------------------------------------
Confidence            999999998766 9999999999922 21111111                                             


Q ss_pred             ccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCC
Q 001362          707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR  786 (1092)
Q Consensus       707 d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~  786 (1092)
                                           +|.  ..+.|..++-...+  ++.+...+.|..=.++.                     
T Consensus       325 ---------------------lPe--~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~---------------------  358 (626)
T KOG2106|consen  325 ---------------------LPE--QFGPIRTVAEGKGD--ILVGTTRNFILQGTLEN---------------------  358 (626)
T ss_pred             ---------------------Cch--hcCCeeEEecCCCc--EEEeeccceEEEeeecC---------------------
Confidence                                 111  22333333322212  45554444443322211                     


Q ss_pred             CCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001362          787 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD  865 (1092)
Q Consensus       787 ~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d  865 (1092)
                       +..+.     ..+|......++.+|+...+++++ |+.+++|+  ..+...+.. ...++.|+.|+| .+ .+|.|+..
T Consensus       359 -~f~~~-----v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~  427 (626)
T KOG2106|consen  359 -GFTLT-----VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTAT  427 (626)
T ss_pred             -CceEE-----EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeecc
Confidence             11111     124888899999999999888887 79999999  444444333 456889999999 77 99999999


Q ss_pred             CcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEe
Q 001362          866 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH  945 (1092)
Q Consensus       866 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  945 (1092)
                      |...+.|.++...+..-.. ..+++++.|+|+|.+||.|+.|+.|+||.++.+..... .+....+     ..|+.+.||
T Consensus       428 G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~-r~~k~~g-----s~ithLDwS  500 (626)
T KOG2106|consen  428 GRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS-RVGKCSG-----SPITHLDWS  500 (626)
T ss_pred             ceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE-EeeeecC-----ceeEEeeec
Confidence            9999999999665555444 88999999999999999999999999999987553322 2222233     369999999


Q ss_pred             cCCCEEEE-EeCCcEEEEEcCCceeee-----------------eeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001362          946 KDQTRFLL-VHETHLAIYEAEELTCLK-----------------QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       946 ~dg~~la~-~~d~~i~lwd~~~~~~~~-----------------~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
                      +|+++|.+ +.|-.|..|.....+.+.                 .....|+..|..++-|.+.+++++|...|.|++|..
T Consensus       501 ~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y  580 (626)
T KOG2106|consen  501 SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY  580 (626)
T ss_pred             CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence            99999999 778889999443222111                 112235777778888889999999999999999988


Q ss_pred             CCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001362         1008 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus      1008 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
                      +--...+.+     .....|++.|.  +++|.-.| ..|++.+.|..|..|++
T Consensus       581 Pc~s~rA~~-----he~~ghs~~vt--~V~Fl~~d-~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  581 PCSSPRAPS-----HEYGGHSSHVT--NVAFLCKD-SHLISTGKDTSIMQWRL  625 (626)
T ss_pred             ccCCCcccc-----eeeccccceeE--EEEEeeCC-ceEEecCCCceEEEEEe
Confidence            754443222     22233567677  55666534 55666669999999987

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-32  Score=293.71  Aligned_cols=499  Identities=16%  Similarity=0.200  Sum_probs=354.7

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +...+..|..++|+|..-+++++-..|.|++||..-+.++.   .|.+|.++|..++|+|++.  +++|||.|..|+||+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN   79 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence            44467889999999999999999999999999999998777   6889999999999999999  899999999999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      .++.+++.++.||.+.|..+.|++.-  .+++|+|.|.+|+||++.+.+++..+++|.+-|.|..|+|....+++++-  
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL--  155 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL--  155 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence            99999999999999999999997643  69999999999999999999999999999999999999999999999987  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE---EEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001362          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI---LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l---~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1092)
                        +.+|++||+..-+....-.+.-  ...+       .+...   +-|+.|-          -....+.+|  ...|+-+
T Consensus       156 --DQTVRVWDisGLRkk~~~pg~~--e~~~-------~~~~~~~dLfg~~Da----------VVK~VLEGH--DRGVNwa  212 (1202)
T KOG0292|consen  156 --DQTVRVWDISGLRKKNKAPGSL--EDQM-------RGQQGNSDLFGQTDA----------VVKHVLEGH--DRGVNWA  212 (1202)
T ss_pred             --cceEEEEeecchhccCCCCCCc--hhhh-------hccccchhhcCCcCe----------eeeeeeccc--ccccceE
Confidence              5569999986543322211100  0011       11111   1122222          223444544  4579999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCCc--eeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecc
Q 001362          629 CFNKNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  706 (1092)
Q Consensus       629 ~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~  706 (1092)
                      +|+|.-.++++|++|..|++|.+...+  .+.+.++|.+.|.++.|+                      |...++++.+.
T Consensus       213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh----------------------p~q~lIlSnsE  270 (1202)
T KOG0292|consen  213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH----------------------PHQDLILSNSE  270 (1202)
T ss_pred             EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec----------------------CccceeEecCC
Confidence            999999999999999999999988664  456789999999999997                      56788999999


Q ss_pred             ccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCC
Q 001362          707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR  786 (1092)
Q Consensus       707 d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~  786 (1092)
                      |+++|+||+......+++..      ...+...++..|..+.++++...| +.+|.++.                     
T Consensus       271 DksirVwDm~kRt~v~tfrr------endRFW~laahP~lNLfAAgHDsG-m~VFkleR---------------------  322 (1202)
T KOG0292|consen  271 DKSIRVWDMTKRTSVQTFRR------ENDRFWILAAHPELNLFAAGHDSG-MIVFKLER---------------------  322 (1202)
T ss_pred             CccEEEEecccccceeeeec------cCCeEEEEEecCCcceeeeecCCc-eEEEEEcc---------------------
Confidence            99999999987666655532      567788999999999665555554 45555432                     


Q ss_pred             CCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee--eEEecCC---CCCeEEEEEcCCCCCEEEE
Q 001362          787 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIMPP---SPTATSLAFNPHDNNVIAI  861 (1092)
Q Consensus       787 ~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~--~~~~~~~---~~~i~~l~~s~~d~~~las  861 (1092)
                                     +.+  +.++  ++..|....+..|+-+|+.+.+.  +..++..   ..+..++.++|..+..|++
T Consensus       323 ---------------Erp--a~~v--~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlic  383 (1202)
T KOG0292|consen  323 ---------------ERP--AYAV--NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLIC  383 (1202)
T ss_pred             ---------------cCc--eEEE--cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEE
Confidence                           222  2333  34445555688999999987553  3334433   3678999999955555555


Q ss_pred             EeCC-CcEEEEEcCCceee----EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001362          862 GMDD-STILIYNARSSEVI----SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  936 (1092)
Q Consensus       862 g~~d-g~v~iwd~~~~~~~----~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  936 (1092)
                      ...| |...++.+......    .... ......++ |-..+++.+---.+..+.+-++.....+   -+..+.      
T Consensus       384 s~~~n~~y~L~~ipk~~~~~~~~~~~~-k~tG~~a~-fvarNrfavl~k~~~~v~ik~l~N~vtk---kl~~~~------  452 (1202)
T KOG0292|consen  384 SNLDNGEYELVQIPKDSDGVSDGKDVK-KGTGEGAL-FVARNRFAVLDKSNEQVVIKNLKNKVTK---KLLLPE------  452 (1202)
T ss_pred             eccCCCeEEEEEecCcccccCCchhhh-cCCCCceE-EEEecceEEEEecCcceEEecccchhhh---cccCcc------
Confidence            4433 45555655432110    0000 11112222 2222233332223555666666553211   122211      


Q ss_pred             CCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001362          937 PSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       937 ~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
                       .+..+-+..+|.+|+. +...|.+||++....+.++.   -..|..+.||+|..+++--+. .+|.|.+..
T Consensus       453 -~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~---~s~vkyvvws~dm~~vAll~K-h~i~i~~kk  518 (1202)
T KOG0292|consen  453 -STDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK---VSKVKYVVWSNDMSRVALLSK-HTITIADKK  518 (1202)
T ss_pred             -cccceeeccCccEEEE-cCCeEEEEEeecceEEEEEe---cCceeEEEEcCccchhhhccc-ceEEEEecc
Confidence             2445666666766554 45678999998888777654   457888999999887776553 456666543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.9e-30  Score=272.48  Aligned_cols=550  Identities=12%  Similarity=0.114  Sum_probs=387.3

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001362          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  474 (1092)
                      ...|.++|||.+.+.||.+-.+|.|.||++..+-....  .+.++. ..|.+++|++.++   |.+.+.+|.|.-||+.+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT   99 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence            46899999999999999999999999999998654433  455554 5799999997665   89999999999999999


Q ss_pred             CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEEEEccCCCEEEEEecCCC
Q 001362          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      ++.++.+....+.|.+++.++..  ..++.|+.||.+...+.........  +....+.+.+++|+|++..++.|+.   
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~---  174 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI---  174 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence            99999999999999999997755  6899999999777777666555443  3334578999999999999999986   


Q ss_pred             CceeEEEEeCCCCeEEEEEeec----c-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001362          553 GESFLVEWNESEGAIKRTYQGL----Q-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~----~-~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                       ++.|++||..++..+......    . ...--|+++.|-.+ ..+++|...|+|.+||...+.+++....+..  .|.+
T Consensus       175 -Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~  250 (691)
T KOG2048|consen  175 -DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLA  250 (691)
T ss_pred             -CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--ceeE
Confidence             778999999999877632211    1 01234778888755 5799999999999999999999998887744  6999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001362          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      ++..+++.++++++.|+.|.-+...++..-                                                  
T Consensus       251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~--------------------------------------------------  280 (691)
T KOG2048|consen  251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE--------------------------------------------------  280 (691)
T ss_pred             EEEcCCCCeEEEccCCCceEEEEecCCccc--------------------------------------------------
Confidence            999999999999999999988877654210                                                  


Q ss_pred             cccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCC
Q 001362          708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH  787 (1092)
Q Consensus       708 ~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~  787 (1092)
                           |-..           .+...|...|.++++.++  .+++++.|.++.+-.....+.              .+   
T Consensus       281 -----wv~~-----------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~---  325 (691)
T KOG2048|consen  281 -----WVIN-----------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MD---  325 (691)
T ss_pred             -----eeee-----------ccccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hh---
Confidence                 1000           011237778888888887  688888888777632211000              00   


Q ss_pred             CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce---------eeEEecCCCCCeEEEEEcCCCCCE
Q 001362          788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---------TILTIMPPSPTATSLAFNPHDNNV  858 (1092)
Q Consensus       788 g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~---------~~~~~~~~~~~i~~l~~s~~d~~~  858 (1092)
                      .  .+....    ..  -.-+...|..++++.-.+..+.+|.+.+.-         +.+-.......|.+.+.|| +|++
T Consensus       326 h--~~~~~~----p~--~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~  396 (691)
T KOG2048|consen  326 H--RQKNLF----PA--SDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNL  396 (691)
T ss_pred             h--hccccc----cc--cceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCE
Confidence            0  000000    00  112345566666666677888889876541         1222233456899999999 9999


Q ss_pred             EEEEeCCCcEEEEEcCCceee-----EeeccccCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCC
Q 001362          859 IAIGMDDSTILIYNARSSEVI-----SKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGV  932 (1092)
Q Consensus       859 lasg~~dg~v~iwd~~~~~~~-----~~l~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~  932 (1092)
                      ++.+. -..++||.+.....+     .....-.-....+.|+-|++.++.++ .+..+.+.++++........++.. ..
T Consensus       397 Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~  474 (691)
T KOG2048|consen  397 IAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AK  474 (691)
T ss_pred             EEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cC
Confidence            99876 456888888753222     11222344677889999998888888 777888888887654333333222 12


Q ss_pred             cCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCC
Q 001362          933 MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       933 ~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
                      .   +.|..++.||||++||+ +..+.|.+|++++++..... ..-...|+.++|+| +-..|+.+..++.+.-||++..
T Consensus       475 ~---~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~-~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~  550 (691)
T KOG2048|consen  475 C---PSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLK-VRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEAR  550 (691)
T ss_pred             C---CcceeEEEcCCCCEEEEEeccceEEEEEcccceeecch-hccCcceeeeeccccccCcEEEEecCCeEEEEecchh
Confidence            2   37999999999999999 78899999999988765432 22358899999995 5567888889999999999554


Q ss_pred             ceEEeeccc--cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001362         1011 EVQCRILST--AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1011 ~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      .+ .++...  ..+|..+..-.-....+.|+|.+ ...+...+.+-+++.|+.
T Consensus       551 ~l-~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n-~s~~~~~~a~w~~~id~~  601 (691)
T KOG2048|consen  551 NL-TRWSKNNTRNLPKEPKTLIPGIPGISFDPKN-SSRFIVYDAHWSCLIDFS  601 (691)
T ss_pred             hh-hhhhhccccccccChhhcCCCCceEEeCCCC-ccEEEEEcCcEEEEEecC
Confidence            42 222100  11111111111112346677753 444445556667777763

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.9e-33  Score=269.36  Aligned_cols=290  Identities=18%  Similarity=0.234  Sum_probs=252.2

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      ..|.||+++|..+.|+|+|. ++|+|+.|..|.+|++.....-.                  -.+++|.++|..+.|.+|
T Consensus        41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d  101 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRD  101 (338)
T ss_pred             hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccC
Confidence            45789999999999999998 79999999999999976533221                  127799999999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001362          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      +..|++++.|.+|+.||+++|++.+   .+++|..-|+++.-+.-|.+ ++.|++.|+++++||+++..+++++. ....
T Consensus       102 ~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq  176 (338)
T KOG0265|consen  102 GSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ  176 (338)
T ss_pred             CCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-ccee
Confidence            9999999999999999999998777   67899999999996666665 78899999999999999999888875 4567


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC----
Q 001362          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES----  563 (1092)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~----  563 (1092)
                      ++++.|..  ++..+++|+-|+.|++||++.......+.+|..+|+.+..+++|.++.+-+.    +..+++||.+    
T Consensus       177 ltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p  250 (338)
T KOG0265|consen  177 LTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAP  250 (338)
T ss_pred             EEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCC
Confidence            88999854  5568999999999999999999999999999999999999999999998875    7789999986    


Q ss_pred             CCeEEEEEeecccc-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001362          564 EGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      ...++..+.++... ......++|+|++..+-+|+.|..+++||......+..+++|.  ..|+++.|+|....+.+++.
T Consensus       251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e~iils~~s  328 (338)
T KOG0265|consen  251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTEPIILSCSS  328 (338)
T ss_pred             CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCCcEEEEecc
Confidence            34557888887511 1245678999999999999999999999999989998888764  46999999999999999999


Q ss_pred             CCeEEEE
Q 001362          643 ENRIKIL  649 (1092)
Q Consensus       643 dg~i~iw  649 (1092)
                      |.+|++=
T Consensus       329 dk~i~lg  335 (338)
T KOG0265|consen  329 DKTIYLG  335 (338)
T ss_pred             CceeEee
Confidence            9998874

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.8e-33  Score=267.36  Aligned_cols=286  Identities=18%  Similarity=0.296  Sum_probs=249.2

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|++.|..+.|+|+|.+||+|+.|..|.+|++....  .....+++|.+.|..+.|.+|+.  .+++++.|++|+.||
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGWD  118 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEEe
Confidence            78999999999999999999999999999999976543  33447889999999999999999  899999999999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      +++|++++.+++|...|+++... ..+..++.+++.||++++||++......++. ....++++.|..++..+++++-  
T Consensus       119 ~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI--  194 (338)
T KOG0265|consen  119 AETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI--  194 (338)
T ss_pred             cccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc--
Confidence            99999999999999999999843 2344688899999999999999877766654 2347899999999999999987  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEeCCCCCCC--C
Q 001362          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPE--N  625 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~--v  625 (1092)
                        ++.|.+||++.+.....+.||.   ++|+.+..+|+|.++++-+.|.++++||++..    +++..+..+.+.-.  .
T Consensus       195 --dn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl  269 (338)
T KOG0265|consen  195 --DNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL  269 (338)
T ss_pred             --cCceeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence              4459999999999999999999   99999999999999999999999999998753    44666666544322  4


Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec
Q 001362          626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  705 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  705 (1092)
                      ..++|+|+++.+.+|+.|..+++||......+..+.+|...|.++.|.|                      ....+.+++
T Consensus       270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp----------------------~e~iils~~  327 (338)
T KOG0265|consen  270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP----------------------TEPIILSCS  327 (338)
T ss_pred             ceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC----------------------CCcEEEEec
Confidence            5789999999999999999999999999999999999999999999985                      455667777


Q ss_pred             cccccce
Q 001362          706 AENKSEV  712 (1092)
Q Consensus       706 ~d~~i~l  712 (1092)
                      .|.+|.+
T Consensus       328 sdk~i~l  334 (338)
T KOG0265|consen  328 SDKTIYL  334 (338)
T ss_pred             cCceeEe
Confidence            7776654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-33  Score=258.83  Aligned_cols=292  Identities=15%  Similarity=0.215  Sum_probs=253.3

Q ss_pred             CCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE
Q 001362          321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  400 (1092)
Q Consensus       321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~  400 (1092)
                      .+|...+.+|..|++.|.++.|+-||+| ..+++.|.+|++|+...|.++++                   +.+|...|.
T Consensus         4 e~ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVl   63 (307)
T KOG0316|consen    4 ELPTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVL   63 (307)
T ss_pred             cCcchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceee
Confidence            4577778899999999999999999995 67777899999999999999987                   779999999


Q ss_pred             EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC--Ccee
Q 001362          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--GSRT  478 (1092)
Q Consensus       401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~--~~~~  478 (1092)
                      .++.+.|...+++|+.|..|.+||+++|+.++   .+.+|.+.|+.++|+.+..  .+++|+.|.++++||-++  -+++
T Consensus        64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePi  138 (307)
T KOG0316|consen   64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPI  138 (307)
T ss_pred             eccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCcc
Confidence            99999999999999999999999999998777   7899999999999999999  899999999999999875  4678


Q ss_pred             EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001362          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1092)
                      +.+......|.++.+    .++.+++|+.||++|.||++.+.....+  .+.+|++++|++|++..++++.    ++.++
T Consensus       139 Qildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlr  208 (307)
T KOG0316|consen  139 QILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLR  208 (307)
T ss_pred             chhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceee
Confidence            888888899999987    4468999999999999999887654443  4568999999999999998876    66799


Q ss_pred             EEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001362          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  638 (1092)
                      +.|-.+|+++..+.||......+ .++++.....+++|++||.|++||+.....+..+..+.. ..+..++++|.-..++
T Consensus       209 LlDk~tGklL~sYkGhkn~eykl-dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~  286 (307)
T KOG0316|consen  209 LLDKETGKLLKSYKGHKNMEYKL-DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFI  286 (307)
T ss_pred             ecccchhHHHHHhcccccceeee-eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCcccee
Confidence            99999999999999998333333 456777778999999999999999999999999887754 4578999999877777


Q ss_pred             EEeCCCeEEEEE
Q 001362          639 VIANENRIKILE  650 (1092)
Q Consensus       639 ~~~~dg~i~iw~  650 (1092)
                      ++... .+..|.
T Consensus       287 ~A~~~-~~~~~~  297 (307)
T KOG0316|consen  287 TATGH-GDLFWY  297 (307)
T ss_pred             EecCC-ceecee
Confidence            77654 445554

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-33  Score=276.01  Aligned_cols=285  Identities=20%  Similarity=0.286  Sum_probs=264.3

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|..+|+.+-|+|+-...++++.|++|++||..+|+..+   .++||...|.+++|+..|+  ++++++.|-.+++||
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD  178 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence            77899999999999999999999999999999999998765   7899999999999999999  899999999999999


Q ss_pred             CCC-CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001362          472 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       472 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      .++ .++++.+.+|...|.+++|.|.+  .++++++.|.+|+.|+++++-++.++.+|...|..+..+.||..+++++. 
T Consensus       179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~-  255 (406)
T KOG0295|consen  179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN-  255 (406)
T ss_pred             HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence            887 67888999999999999998764  69999999999999999999999999999999999999999999999986 


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCceEEE
Q 001362          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT  615 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~---------------~~~l~~~s~dg~i~iwd~~~~~~~~~  615 (1092)
                         +.+|++|-..++++...+..|+   .+|.+++|.|.               ++++.+++.|++|++||+.++.++.+
T Consensus       256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t  329 (406)
T KOG0295|consen  256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT  329 (406)
T ss_pred             ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence               6679999999999999999998   89999999763               25889999999999999999999999


Q ss_pred             EeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCC
Q 001362          616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK  695 (1092)
Q Consensus       616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s  695 (1092)
                      +.+|.  ..|..++|+|.|++|+++.+|+++++||+.+.++...+..|..-++++.|.                      
T Consensus       330 L~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh----------------------  385 (406)
T KOG0295|consen  330 LVGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH----------------------  385 (406)
T ss_pred             Eeccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC----------------------
Confidence            98775  479999999999999999999999999999999999999999999999886                      


Q ss_pred             CCCccceeeccccccceec
Q 001362          696 EDVKPEISVEAENKSEVEK  714 (1092)
Q Consensus       696 ~d~~~l~s~~~d~~i~lw~  714 (1092)
                      .+..++++|+-|.++++|.
T Consensus       386 ~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  386 KTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             CCCceEEeccccceeeeee
Confidence            3455899999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.2e-32  Score=312.31  Aligned_cols=294  Identities=21%  Similarity=0.350  Sum_probs=256.5

Q ss_pred             eeecccC-CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCC--eeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          327 AQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       327 ~~~l~~h-~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      .+++.+| ...|.|+.|||||+ .+++++.|+.+++|+..+++  ....                   +.+|...|..++
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~  210 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA  210 (456)
T ss_pred             eeeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence            5666555 78999999999999 59999999999999997776  3332                   578999999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEc-cCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001362          404 WSPDGSLLGVAYSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~-~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      |+|||+++++++.|++|+|||+ ..+..++   ++.+|...|++++|+|+|+  ++++|+.|++|+|||+++++++..+.
T Consensus       211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~  285 (456)
T KOG0266|consen  211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK  285 (456)
T ss_pred             ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence            9999999999999999999999 4444444   7889999999999999997  89999999999999999999999999


Q ss_pred             cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCC--ceEEEEEccCCCEEEEEecCCCCceeEE
Q 001362          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~--~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1092)
                      +|.+.|++++|  .+++.+|++++.||.|++||+.++.  ....+..+..  +++.+.|+|+++++++++.    ++.+.
T Consensus       286 ~hs~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~  359 (456)
T KOG0266|consen  286 GHSDGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK  359 (456)
T ss_pred             ccCCceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence            99999999999  4577899999999999999999988  3455554444  5999999999999999986    66799


Q ss_pred             EEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001362          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  638 (1092)
                      +||+..+.....+.+|......+.+...++.+.++++|+.|+.|++||..++..+..+..+. ...+..+.++|..++++
T Consensus       360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~  438 (456)
T KOG0266|consen  360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA  438 (456)
T ss_pred             EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence            99999999999999998322245556668899999999999999999999999999988775 45688999999999999


Q ss_pred             EEe--CCCeEEEEECC
Q 001362          639 VIA--NENRIKILETP  652 (1092)
Q Consensus       639 ~~~--~dg~i~iw~~~  652 (1092)
                      +++  .|+.+++|...
T Consensus       439 s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  439 SSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ecCcCCCceEEEecCC
Confidence            998  68999999754

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=6.1e-34  Score=283.55  Aligned_cols=286  Identities=21%  Similarity=0.308  Sum_probs=249.1

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001362          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  410 (1092)
                      ..-+..|..|.|.|+|++ |++|+..|.+.+|+..+-      .|             ..++..|..+|.++.||++|.+
T Consensus        93 NKvkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~f------nF-------------EtilQaHDs~Vr~m~ws~~g~w  152 (464)
T KOG0284|consen   93 NKVKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSF------NF-------------ETILQAHDSPVRTMKWSHNGTW  152 (464)
T ss_pred             cccccceeeEEEcCCCce-eEeecccccEEEecCcee------eH-------------HHHhhhhcccceeEEEccCCCE
Confidence            334568999999999996 789999999999997331      11             1237789999999999999999


Q ss_pred             EEEEeCCCEEEEEEccCCCcccceEEEcc-cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeE
Q 001362          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  489 (1092)
                      +++|+.+|.|++|+..-....    .+.+ |...|++++|||+..  .+++|+.||+|+|||....+.-..+.||.-.|.
T Consensus       153 miSgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk  226 (464)
T KOG0284|consen  153 MISGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK  226 (464)
T ss_pred             EEEcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence            999999999999998764322    2334 558999999999888  799999999999999999988888999999999


Q ss_pred             EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001362          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1092)
Q Consensus       490 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1092)
                      ++.|+|..  .+|++++.|..|++||.+++.++.++..|...|..+.|++++++|++++.    |..++++|+++.+.+.
T Consensus       227 svdWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~  300 (464)
T KOG0284|consen  227 SVDWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELF  300 (464)
T ss_pred             eeccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHH
Confidence            99998865  59999999999999999999999999999999999999999999999986    6679999999999999


Q ss_pred             EEeeccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001362          570 TYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  648 (1092)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~p~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  648 (1092)
                      ++++|.   ..|.++.|+|-.. .+.+|+.||.|..|.+...+++..+.. .+...|.+++|+|=|..|++|+.|.++++
T Consensus       301 ~~r~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rf  376 (464)
T KOG0284|consen  301 TYRGHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRF  376 (464)
T ss_pred             Hhhcch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceee
Confidence            999998   8999999999754 556689999999999986666655543 34467999999999999999999999999


Q ss_pred             EECC
Q 001362          649 LETP  652 (1092)
Q Consensus       649 w~~~  652 (1092)
                      |...
T Consensus       377 w~r~  380 (464)
T KOG0284|consen  377 WTRN  380 (464)
T ss_pred             eccC
Confidence            9755

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.4e-32  Score=268.65  Aligned_cols=294  Identities=14%  Similarity=0.233  Sum_probs=258.4

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      ++.+|.+.|.|+++-|..+++++|+.|++|+|||+.+|+...   ++.||...|..+++|+-..  ++++++.|+.|+.|
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw  220 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW  220 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence            478999999999999999999999999999999999997554   7889999999999999888  89999999999999


Q ss_pred             ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001362          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      |++..+.++.+.||-..|.+++.+|.-  ..|++|+.|.++|+||+++...+..+.+|..+|.++.+.|-...+++|+. 
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~-  297 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH-  297 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence            999999999999999999999998765  58999999999999999999999999999999999999998889999976 


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001362          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                         +.+|++||+..|+...++..|.   ..|.+++.+|....+++++.|. |+-|++..|..+..+..+.  ..+++++.
T Consensus       298 ---D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~--~iintl~~  368 (460)
T KOG0285|consen  298 ---DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHN--AIINTLSV  368 (460)
T ss_pred             ---CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccccc--ceeeeeee
Confidence               6779999999999999998888   8999999999999889888765 8999999999999877664  45888888


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccccc
Q 001362          631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  710 (1092)
Q Consensus       631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i  710 (1092)
                      +.|+ ++++|+++|.+..||.+++..++.......+                                     |+     
T Consensus       369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-------------------------------------GS-----  405 (460)
T KOG0285|consen  369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-------------------------------------GS-----  405 (460)
T ss_pred             ccCc-eEEEcCCceEEEEEecCcCcccccccccccC-------------------------------------Cc-----
Confidence            8766 7889999999999999988665544211000                                     00     


Q ss_pred             ceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeec
Q 001362          711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP  764 (1092)
Q Consensus       711 ~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~  764 (1092)
                                          ......|.+.+|...|.+|+++..|.+|++|.-+
T Consensus       406 --------------------l~sEagI~as~fDktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  406 --------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             --------------------cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence                                0134568888999999999999999999999743

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.8e-33  Score=276.99  Aligned_cols=292  Identities=16%  Similarity=0.200  Sum_probs=251.3

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      ++..|.+.|..+.||++|+|||+++.|.+..||++.....++...++.+|..+|..+.||||++  +|++|+.|..+.+|
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW  296 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence            3778999999999999999999999999999999987766777778999999999999999999  79999999999999


Q ss_pred             ECCCCceeEEEe-cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CCCceEEEEEccCCCEEEEEe
Q 001362          471 DAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       471 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      |+.+|.+.+.+. +|...+.+++|.|  ||..+++|+.|+++..||++.... ..+.+ ....|.++++++||+++++..
T Consensus       297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~  373 (519)
T KOG0293|consen  297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVT  373 (519)
T ss_pred             cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEEe
Confidence            999999988774 3568899999955  778999999999999999876542 22222 234689999999999999887


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001362          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1092)
                      .    +..|++++..+.........+    .+|++.+.+.+++++++--.+..+++||++....+....++.....+..-
T Consensus       374 ~----d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS  445 (519)
T KOG0293|consen  374 V----DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS  445 (519)
T ss_pred             c----ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe
Confidence            6    556999998876665544443    58999999999999999999999999999988888888777655556666


Q ss_pred             EEcc-CCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001362          629 CFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       629 ~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      ||.- +..++++|++|+.|+||+..+++++..+.||...|.+++++|                     .+..++|+++.|
T Consensus       446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP---------------------~~p~m~ASasDD  504 (519)
T KOG0293|consen  446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP---------------------ADPEMFASASDD  504 (519)
T ss_pred             ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC---------------------CCHHHhhccCCC
Confidence            7765 568999999999999999999999999999999999999996                     456779999999


Q ss_pred             cccceeccc
Q 001362          708 NKSEVEKPL  716 (1092)
Q Consensus       708 ~~i~lw~~~  716 (1092)
                      |+||+|-..
T Consensus       505 gtIRIWg~~  513 (519)
T KOG0293|consen  505 GTIRIWGPS  513 (519)
T ss_pred             CeEEEecCC
Confidence            999999864

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1e-33  Score=288.69  Aligned_cols=295  Identities=16%  Similarity=0.257  Sum_probs=253.1

Q ss_pred             CCcceeeecccCCCCceEEeecC-CCceEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001362          322 FPKTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1092)
Q Consensus       322 ~p~~~~~~l~~h~~~V~~v~~sp-dg~~llasg~~d~~v~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V  399 (1092)
                      +|+..+.++.||+..|+++.|.| .+. ||++|+.|+.|+||++.. +.++++                   +.||..+|
T Consensus       202 ~Pkk~~~~~~gH~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~V  261 (503)
T KOG0282|consen  202 LPKKLSHNLSGHTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPV  261 (503)
T ss_pred             ccHhheeeccCCccccchhhhccceee-EEEecCCCceEEEEEEecCcceehh-------------------hhcchhhh
Confidence            68899999999999999999999 665 899999999999999987 777765                   77899999


Q ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001362          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      ..++|+++|..+++++.|+.|++||+++|+++..   +. ....++|+.|.||+.. .+++|+.|+.|+.||+++++.++
T Consensus       262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvq  336 (503)
T KOG0282|consen  262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQ  336 (503)
T ss_pred             hhhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHH
Confidence            9999999999999999999999999999987763   22 3346889999999955 78889999999999999999999


Q ss_pred             EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001362          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1092)
                      ++..|-+.|..+.|.+  ++.++++.+.|+.+++|+.+..-.+.. .........++..+|++.++++-+.    ++.|.
T Consensus       337 eYd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~  410 (503)
T KOG0282|consen  337 EYDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIA  410 (503)
T ss_pred             HHHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEE
Confidence            9999999999999954  778999999999999999987766543 3334456778999999999988765    66788


Q ss_pred             EEeCCC---CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CC
Q 001362          559 EWNESE---GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NG  634 (1092)
Q Consensus       559 iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~  634 (1092)
                      ++....   ....+.+.||... +.-..+.|+|||.+|++|+.||.+.+||.++-+++..+..|.  ..+..+.|+| ..
T Consensus       411 ifs~~~~~r~nkkK~feGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e~  487 (503)
T KOG0282|consen  411 IFSTVPPFRLNKKKRFEGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVEP  487 (503)
T ss_pred             EEecccccccCHhhhhcceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCCc
Confidence            887543   2344567787632 445678999999999999999999999999999999998774  4688999999 46


Q ss_pred             CEEEEEeCCCeEEEEE
Q 001362          635 TLLAVIANENRIKILE  650 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~  650 (1092)
                      ..+|+++.||.|++|+
T Consensus       488 Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  488 SKVATCGWDGLIKIWD  503 (503)
T ss_pred             ceeEecccCceeEecC
Confidence            6899999999999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.2e-31  Score=250.40  Aligned_cols=293  Identities=16%  Similarity=0.241  Sum_probs=238.3

Q ss_pred             ccccccEEEEEEecC-CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001362          731 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA  809 (1092)
Q Consensus       731 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~  809 (1092)
                      .+|.+++..++|+|- |..|++++.|..|++|+.....              -|.        .......+|...|++++
T Consensus        11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~~--------ck~vld~~hkrsVRsvA   68 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SWT--------CKTVLDDGHKRSVRSVA   68 (312)
T ss_pred             cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cEE--------EEEeccccchheeeeee
Confidence            348889999999999 8999999999999999865310              011        11111225999999999


Q ss_pred             EecCCCEEEEEe-CCeEEEEEcC--CceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc---eeeEeec
Q 001362          810 LSKNDAYLFSAS-GGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLE  883 (1092)
Q Consensus       810 ~s~dg~~l~~~s-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~  883 (1092)
                      |+|.|++||+++ |.++.||.-.  +.+++.++.+|.++|.|++|++ +|++||+++.|+.|.||.+..+   ++...|+
T Consensus        69 wsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~  147 (312)
T KOG0645|consen   69 WSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ  147 (312)
T ss_pred             ecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence            999999999999 8999999876  4578999999999999999999 9999999999999999999854   5789999


Q ss_pred             cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEE
Q 001362          884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIY  962 (1092)
Q Consensus       884 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lw  962 (1092)
                      +|+..|..+.|+|...+|+|+|.|.+|++|+-..+  ....+.+.+.++..   .|.+++|.+.|..|++ +.|++++||
T Consensus       148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw  222 (312)
T KOG0645|consen  148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIW  222 (312)
T ss_pred             cccccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEee
Confidence            99999999999999999999999999999988731  12567888888876   7999999999998888 578999999


Q ss_pred             EcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCC
Q 001362          963 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1042 (1092)
Q Consensus       963 d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~ 1042 (1092)
                      ...+     .+..-|++.+..+.|. + ..|++++.|+.|+++.-..+-.-..+... ....+.|...|+  ++.|.|..
T Consensus       223 ~~~~-----~~~~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVN--sV~w~p~~  292 (312)
T KOG0645|consen  223 RLYT-----DLSGMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVN--SVQWNPKV  292 (312)
T ss_pred             eecc-----CcchhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHH-Hhhhcccccccc--eEEEcCCC
Confidence            9652     2344578899999998 4 47999999999999987754222223211 222233566666  67899965


Q ss_pred             CCEEEEEeCCCcEEEEeCC
Q 001362         1043 PTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1043 ~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      .++|++|++||.|++|.+.
T Consensus       293 ~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  293 SNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCceeecCCCceEEEEEec
Confidence            7899999999999999874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.1e-32  Score=296.80  Aligned_cols=264  Identities=14%  Similarity=0.197  Sum_probs=230.1

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcC---------cCcccccccCCccccCCCCCceeeecCCCCCCCC
Q 001362          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT---------LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE  803 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~---------~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~  803 (1092)
                      ....+.|..|++|+..++.+-.|..|++|.+...+..         ......+.....+.|..++.....  +.  +|.+
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~--L~--GH~G  452 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT--LY--GHSG  452 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE--ee--cCCC
Confidence            4556889999999999999999999999999854321         111112222344455554442332  32  5999


Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee
Q 001362          804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  882 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l  882 (1092)
                      +|....|+|+.++|++++ |+++|+|.+.+..++..+++|..+|..+.|+| -|.++|||+.|++.++|......+++.+
T Consensus       453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRif  531 (707)
T KOG0263|consen  453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIF  531 (707)
T ss_pred             ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhh
Confidence            999999999999999999 69999999999999999999999999999999 8999999999999999999999999999


Q ss_pred             ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEE
Q 001362          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAI  961 (1092)
Q Consensus       883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~l  961 (1092)
                      .||.+.|.|+.|+|+..++|+||.|.+|++||+.+|.     .++.+.||..   +|.+++|||+|++|++ +.|+.|.+
T Consensus       532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VRiF~GH~~---~V~al~~Sp~Gr~LaSg~ed~~I~i  603 (707)
T KOG0263|consen  532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVRIFTGHKG---PVTALAFSPCGRYLASGDEDGLIKI  603 (707)
T ss_pred             cccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEEEecCCCC---ceEEEEEcCCCceEeecccCCcEEE
Confidence            9999999999999999999999999999999999976     5667788776   8999999999999999 58899999


Q ss_pred             EEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001362          962 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       962 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
                      ||+.++..+.. +.+|.+.|.++.||.||..||+||.|++|++||+..-
T Consensus       604 WDl~~~~~v~~-l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  604 WDLANGSLVKQ-LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EEcCCCcchhh-hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            99999999987 5689999999999999999999999999999998754

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-28  Score=260.67  Aligned_cols=504  Identities=15%  Similarity=0.185  Sum_probs=351.7

Q ss_pred             cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-EEEecC-CcCeEEEeecccCCccEEEEEecCCeEEEEEcC
Q 001362          440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD  517 (1092)
Q Consensus       440 h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  517 (1092)
                      ...+|.++||+.+++  .|+.+-.||.|.||++..+=.. ..+.++ ...|.+++|.   ++..|++.+.+|.|..||+.
T Consensus        24 ~Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             eccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEecc
Confidence            456799999999999  6899999999999999876443 455554 4679999996   45689999999999999999


Q ss_pred             CCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe
Q 001362          518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG  597 (1092)
Q Consensus       518 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s  597 (1092)
                      +.+....+...++.|.+++.+|.+..++.++.    ++.++.++...+.......-.. ..+.+.++.|+|++..+++|+
T Consensus        99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~r-q~sRvLslsw~~~~~~i~~Gs  173 (691)
T KOG2048|consen   99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMR-QKSRVLSLSWNPTGTKIAGGS  173 (691)
T ss_pred             cCceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeeccc-ccceEEEEEecCCccEEEecc
Confidence            99999999999999999999999999999875    5578888887776654332222 237899999999999999999


Q ss_pred             CCCcEEEEECCCCceEEEEeC-----CC-CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeee
Q 001362          598 DDHVIKIWDMNKVQLLTTIDA-----GG-GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS  671 (1092)
Q Consensus       598 ~dg~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~  671 (1092)
                      .||.|++||..++..+.....     .. ...-|.++.|-.+ ..+++|...|+|.+||...+..++.+..         
T Consensus       174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~---------  243 (691)
T KOG2048|consen  174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSC---------  243 (691)
T ss_pred             cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhh---------
Confidence            999999999999988773321     11 1122445555543 4678888888888888887766665543         


Q ss_pred             ecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEE
Q 001362          672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA  751 (1092)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~  751 (1092)
                                                                                   |...|.+++..+++.++++
T Consensus       244 -------------------------------------------------------------h~adVl~Lav~~~~d~vfs  262 (691)
T KOG2048|consen  244 -------------------------------------------------------------HDADVLALAVADNEDRVFS  262 (691)
T ss_pred             -------------------------------------------------------------hhcceeEEEEcCCCCeEEE
Confidence                                                                         5556667777777777777


Q ss_pred             eecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEc
Q 001362          752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV  830 (1092)
Q Consensus       752 ~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~  830 (1092)
                      ++.|+.+..|.......             -|-..         .....|...|.+++..++  .+++|+ |..+.+-..
T Consensus       263 aGvd~~ii~~~~~~~~~-------------~wv~~---------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s  318 (691)
T KOG2048|consen  263 AGVDPKIIQYSLTTNKS-------------EWVIN---------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS  318 (691)
T ss_pred             ccCCCceEEEEecCCcc-------------ceeee---------ccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence            77777777666543311             02111         111248889999999888  555555 666666554


Q ss_pred             CCceeeEEecCCCCCeEE-EEEcCCCCCEEEEEeCCCcEEEEEcCCce---------eeEeeccccCCeEEEEEcCCCCE
Q 001362          831 MTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALNI  900 (1092)
Q Consensus       831 ~~~~~~~~~~~~~~~i~~-l~~s~~d~~~lasg~~dg~v~iwd~~~~~---------~~~~l~~h~~~V~~l~~spdg~~  900 (1092)
                      ...+..........+-.+ +...|  .++|..--.+..+.+|.+.+..         +.+-...-...|.+.+.||||++
T Consensus       319 ~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~  396 (691)
T KOG2048|consen  319 REFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNL  396 (691)
T ss_pred             cccCchhhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCE
Confidence            432211111111111112 22333  4566666667788899887651         11222223456999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-E-eCCcEEEEEcCCcee--eeeec-c
Q 001362          901 LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTC--LKQWF-P  975 (1092)
Q Consensus       901 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~d~~i~lwd~~~~~~--~~~~~-~  975 (1092)
                      ++.+.- ..++||.++.........+.......   .....+.|+-|+..++. + ....+.+++..+...  +.... .
T Consensus       397 Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~---~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~  472 (691)
T KOG2048|consen  397 IAISTV-SRTKIYRLQPDPNVKVINVDDVPLAL---LDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ  472 (691)
T ss_pred             EEEeec-cceEEEEeccCcceeEEEeccchhhh---ccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc
Confidence            997654 45889988764322222222211111   25778999999988777 4 556788887765432  22211 1


Q ss_pred             CCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcE
Q 001362          976 ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1055 (1092)
Q Consensus       976 ~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v 1055 (1092)
                      +--..|..+..|+||.||++.+.+|.|.+|++.+++......   .+       .....+++++|.+...++.+..+++|
T Consensus       473 ~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~---rl-------n~~vTa~~~~~~~~~~lvvats~nQv  542 (691)
T KOG2048|consen  473 AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV---RL-------NIDVTAAAFSPFVRNRLVVATSNNQV  542 (691)
T ss_pred             cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh---cc-------CcceeeeeccccccCcEEEEecCCeE
Confidence            245789999999999999999999999999999997764332   01       12345778887778899999999999


Q ss_pred             EEEeCCCCC
Q 001362         1056 YVIEPNEPG 1064 (1092)
Q Consensus      1056 ~~w~~~~~~ 1064 (1092)
                      .-+|+...+
T Consensus       543 ~efdi~~~~  551 (691)
T KOG2048|consen  543 FEFDIEARN  551 (691)
T ss_pred             EEEecchhh
Confidence            999995443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.7e-30  Score=283.16  Aligned_cols=287  Identities=25%  Similarity=0.412  Sum_probs=254.7

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +++.+|.+.|++++|+|+++ ++++|+.||.|.+|++.+++....                   +..|...+..+.|+|+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~   62 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASAD   62 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCC
Confidence            56789999999999999998 688899999999999998875543                   5678899999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001362          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      +++|++++.++.|++|++.+++.+.   .+..|...|.++.|+++++  ++++++.|+.|++||+.+++....+..|...
T Consensus        63 ~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  137 (289)
T cd00200          63 GTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDW  137 (289)
T ss_pred             CCEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence            9999999999999999999875544   5678988999999999977  7888888999999999999999999999999


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001362          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1092)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1092)
                      +.++++++.  +.++++++.||.|++||++..+....+..+...+.++.|+|+++.+++++.    ++.+++||..+++.
T Consensus       138 i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~  211 (289)
T cd00200         138 VNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKC  211 (289)
T ss_pred             EEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCce
Confidence            999999664  578888888999999999988888888888889999999999999998875    56699999999988


Q ss_pred             EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001362          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1092)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  647 (1092)
                      +..+..+.   ..+.++.|+|++.++++++.+|.+++|++.+++....+..+  ...+.+++|+|+++++++++.||.++
T Consensus       212 ~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~  286 (289)
T cd00200         212 LGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIR  286 (289)
T ss_pred             ecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEE
Confidence            88887766   79999999999888888888999999999998888888744  34689999999999999999999999


Q ss_pred             EEE
Q 001362          648 ILE  650 (1092)
Q Consensus       648 iw~  650 (1092)
                      +|+
T Consensus       287 iw~  289 (289)
T cd00200         287 IWD  289 (289)
T ss_pred             ecC
Confidence            995

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=5.9e-33  Score=269.89  Aligned_cols=276  Identities=21%  Similarity=0.305  Sum_probs=234.7

Q ss_pred             CCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001362          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       333 h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      ..+.|.|+.+..+   .+++|..|++|+|||..+-++++.                   +.||++.|.|+.|.  .+.|+
T Consensus       196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqyd--~rvii  251 (499)
T KOG0281|consen  196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQYD--ERVIV  251 (499)
T ss_pred             cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeecc--ceEEE
Confidence            4568999999643   479999999999999999888765                   88999999999995  66999


Q ss_pred             EEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce---eEEEecCCcCeE
Q 001362          413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVY  489 (1092)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~  489 (1092)
                      +|+.|.+|+|||+++|+++.   ++-+|...|..+.|+..    ++++++.|.+|.|||+.....   .+.+.||...|+
T Consensus       252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN  324 (499)
T KOG0281|consen  252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  324 (499)
T ss_pred             ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence            99999999999999999888   67789999999999853    799999999999999987653   356789999999


Q ss_pred             EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001362          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1092)
Q Consensus       490 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1092)
                      .+.|    +.+++++++.|.+|++|++.+.+.+.++.+|...|.++.+  .|+++++|+.    +.+|++||+..|.+++
T Consensus       325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR  394 (499)
T KOG0281|consen  325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR  394 (499)
T ss_pred             eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence            9988    4579999999999999999999999999999999877764  5788888876    7789999999999999


Q ss_pred             EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-------eCCCCCCCCceEEEccCCCEEEEEeC
Q 001362          570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-------DAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      .++||+   .-|.++.|.  .+.+++|+.||+|++||+..+......       ..-.+...|..+.|.  ...+++++.
T Consensus       395 vLeGHE---eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssH  467 (499)
T KOG0281|consen  395 VLEGHE---ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSH  467 (499)
T ss_pred             HHhchH---Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccC
Confidence            999999   899999995  578999999999999999876433111       111223356666664  667899999


Q ss_pred             CCeEEEEECCCCce
Q 001362          643 ENRIKILETPESNS  656 (1092)
Q Consensus       643 dg~i~iw~~~~~~~  656 (1092)
                      |.+|.|||..++..
T Consensus       468 ddtILiWdFl~~~~  481 (499)
T KOG0281|consen  468 DDTILIWDFLNGPP  481 (499)
T ss_pred             CCeEEEEEcCCCCc
Confidence            99999999987743

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.1e-32  Score=271.41  Aligned_cols=280  Identities=16%  Similarity=0.221  Sum_probs=242.4

Q ss_pred             CCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccce
Q 001362          623 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI  702 (1092)
Q Consensus       623 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~  702 (1092)
                      ..|..+.|.|+|+.|++|+..|.+.+|+...-                                  .             
T Consensus        97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f----------------------------------n-------------  129 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF----------------------------------N-------------  129 (464)
T ss_pred             cceeeEEEcCCCceeEeecccccEEEecCcee----------------------------------e-------------
Confidence            45889999999999999999999999986311                                  0             


Q ss_pred             eeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCcc
Q 001362          703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL  782 (1092)
Q Consensus       703 s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~  782 (1092)
                                             +.+-...|.+.|.++.|+++|.+++++..+|.|++|+...+.            ++.
T Consensus       130 -----------------------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn------------Vk~  174 (464)
T KOG0284|consen  130 -----------------------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN------------VKI  174 (464)
T ss_pred             -----------------------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh------------hHH
Confidence                                   000112388999999999999999999999999999865431            111


Q ss_pred             ccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEE
Q 001362          783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI  861 (1092)
Q Consensus       783 w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las  861 (1092)
                      ..              ..|...|++++|||+...+++++ ||+|+|||....+..+.+.+|.-.|.+++|+| ...+||+
T Consensus       175 ~~--------------ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLias  239 (464)
T KOG0284|consen  175 IQ--------------AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIAS  239 (464)
T ss_pred             hh--------------HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEE
Confidence            10              12568999999999999999998 69999999999999899999999999999999 7889999


Q ss_pred             EeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceE
Q 001362          862 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH  941 (1092)
Q Consensus       862 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  941 (1092)
                      |+.|..|++||.++|.++.++.+|...|..+.|+|++++|+|+|.|..++++|+.+     .+-+....+|..   .+.+
T Consensus       240 gskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-----mkEl~~~r~Hkk---dv~~  311 (464)
T KOG0284|consen  240 GSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-----MKELFTYRGHKK---DVTS  311 (464)
T ss_pred             ccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-----hHHHHHhhcchh---hhee
Confidence            99999999999999999999999999999999999999999999999999999995     235666777766   7999


Q ss_pred             EEEecCCCEEEE--EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001362          942 IQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       942 l~~s~dg~~la~--~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
                      ++|+|-..-|++  |.||.|..|.+..-+.+..+..+|...|++++|.|=|..|++|+.|.++++|.-
T Consensus       312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             eccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            999998766555  699999999998778888888899999999999999999999999999999964

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=2.9e-30  Score=292.80  Aligned_cols=291  Identities=21%  Similarity=0.304  Sum_probs=254.4

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC-
Q 001362          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-  472 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~-  472 (1092)
                      .|...|.++.|||||+++++++.++.+++|+..+++. .....+.+|...|.+++|+||++  ++++++.|++|+|||+ 
T Consensus       157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence            3488999999999999999999999999999977662 12225679999999999999999  8999999999999999 


Q ss_pred             CCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001362          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      ..+..++++.+|...|++++|++  +++++++|+.|++|++||+++++....+..|...|.+++|+++++++++++.   
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---  308 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---  308 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence            56689999999999999999966  5589999999999999999999999999999999999999999999999865   


Q ss_pred             CceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCC-CCCceEE
Q 001362          553 GESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRIC  629 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~  629 (1092)
                       ++.|++||..++.  +...+.++.... ++..+.|+|++.++++++.|+.+++||+..+........+... ..+.+..
T Consensus       309 -d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  309 -DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT  386 (456)
T ss_pred             -CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence             7779999999999  567888877333 7999999999999999999999999999999999888877553 1334455


Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCCceeeecccc-cCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec--c
Q 001362          630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--A  706 (1092)
Q Consensus       630 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~  706 (1092)
                      .++.+.++++|+.|+.|.+|+..++..+..+.+| ...+..+.++                      +...++++++  .
T Consensus       387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~----------------------~~~~~~~s~s~~~  444 (456)
T KOG0266|consen  387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH----------------------PTENLIASSSFEG  444 (456)
T ss_pred             ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccC----------------------CCcCeeeecCcCC
Confidence            6789999999999999999999999999999999 7777777776                      5566677776  6


Q ss_pred             ccccceeccc
Q 001362          707 ENKSEVEKPL  716 (1092)
Q Consensus       707 d~~i~lw~~~  716 (1092)
                      |+.+++|..+
T Consensus       445 d~~~~~w~~~  454 (456)
T KOG0266|consen  445 DGLIRLWKYD  454 (456)
T ss_pred             CceEEEecCC
Confidence            8889999754

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.98  E-value=8.7e-30  Score=266.27  Aligned_cols=698  Identities=16%  Similarity=0.145  Sum_probs=371.2

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ..+-.|.+|.+.|+.+.|||-...|||+||.|..|+||.+..|-...-             .-....+.+..-.|.++.|
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~f  136 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRF  136 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeec
Confidence            345678899999999999998777999999999999999985432210             0011224455668889999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC-CceeEEEec
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYSFEG  483 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~~~~~  483 (1092)
                      +|...-|...+..|+++|||+.+++.+.   ++.+|...|.++.|+.||+  +|++++.|+.|+|||.+. ++.++...+
T Consensus       137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~  211 (1012)
T KOG1445|consen  137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG  211 (1012)
T ss_pred             ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence            9977767767788899999999986554   7889999999999999999  899999999999999874 678888888


Q ss_pred             CCcCe-EEEeecccCCccEEEEEecC----CeEEEEEcCCCCc-eEEecCC-CCceEEEEEccCCCEEEEEecCCCCcee
Q 001362          484 HGAPV-YSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA-RVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1092)
Q Consensus       484 ~~~~v-~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~-~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1092)
                      |.+.- ..+.|  .++-..|++.+.+    ..|++||.+.... ..++... ...|.---|.||.++|+.++   .++..
T Consensus       212 H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~  286 (1012)
T KOG1445|consen  212 HGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNK  286 (1012)
T ss_pred             cccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcce
Confidence            87642 22334  4454567766655    4589999876543 2233222 22555667899999988876   45777


Q ss_pred             EEEEeCCCCeEEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE-EEc--
Q 001362          557 LVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFN--  631 (1092)
Q Consensus       557 i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s--  631 (1092)
                      ++.+.+...+..-  .+...-  .......++-|....-+..++  ..+++.+.+...+...- +  .+. ... .|+  
T Consensus       287 l~~lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y-~--VPR-ksyrdFH~D  358 (1012)
T KOG1445|consen  287 LFMLEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPY-I--VPR-KSYRDFHSD  358 (1012)
T ss_pred             EEEEEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchh--hhhheecccCceeeccc-c--cch-hhhhhhhhh
Confidence            8888876554321  111100  011223334443222222221  12233333222221110 0  000 000 111  


Q ss_pred             --cCCCEEEEEeCCCeEEEEECCCCceeeec------ccccC----ceeee------eecCCCcc-ccccccCCceeecC
Q 001362          632 --KNGTLLAVIANENRIKILETPESNSVDAA------GVLSD----NLRKL------SVNPISTV-TGAGIANGSVSVNE  692 (1092)
Q Consensus       632 --~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~----~v~~~------~~~~~~~~-~~~~~~~~~~~~~~  692 (1092)
                        |+..-...+..-|   -|-..+++.++..      +.|..    .+...      +|.+.... ++.++....... +
T Consensus       359 LfPeT~G~~p~~~ag---eWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~-~  434 (1012)
T KOG1445|consen  359 LFPETRGAEPGCTAG---EWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSS-S  434 (1012)
T ss_pred             hCccccCCccCcCcc---ceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCcccccccc-c
Confidence              1110000000000   0111111111110      00100    00000      00000000 000000000000 0


Q ss_pred             CCCCCCccceeeccccccceeccccccCcccccc----ccCCccccccEEEEE------EecCCcEEEEeecCCeeEEE-
Q 001362          693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSL----LLPSKVKANKISRLT------YNNGGQAIFALASNGVHLMW-  761 (1092)
Q Consensus       693 ~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~----~~~~~~~~~~i~~l~------~s~~g~~l~~~~~dg~i~lw-  761 (1092)
                      +.-||-..--+......+|-.+....+.......    .-...+..+++..+.      .-|...-+  ..+-....+. 
T Consensus       435 ~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~pl--t~~~s~~s~~~  512 (1012)
T KOG1445|consen  435 NNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPL--TDSVSTPSVVG  512 (1012)
T ss_pred             cCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCccc--ccccccccccC
Confidence            0001100000000001111111000000000000    000000000000000      00000000  0000000000 


Q ss_pred             -----eecCCCcCcCccc---c----cc----------cCCccccCCCCCcee----eecCCCCCCCCCeeEEEEecCCC
Q 001362          762 -----RWPRNDLTLSTEA---T----TK----------VPPRLYQPRHGPQFM----VNDTTDSNSQEAVPCFALSKNDA  815 (1092)
Q Consensus       762 -----~~~~~~~~~~~~~---~----~~----------~~~~~w~~~~g~~~~----~~~l~~~~~~~~v~~~~~s~dg~  815 (1092)
                           ..+......-|..   +    ..          ..+.-|.-..|....    ...+......-+-.|--|..+.+
T Consensus       513 P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~  592 (1012)
T KOG1445|consen  513 PAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNK  592 (1012)
T ss_pred             ccccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccc
Confidence                 0000000000000   0    00          000001111111000    00000000111112223455666


Q ss_pred             EEEEE---eCCeEEEEEcCCc-eeeEE-ecC--CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc-------eeeEe
Q 001362          816 YLFSA---SGGVISLYIVMTF-KTILT-IMP--PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-------EVISK  881 (1092)
Q Consensus       816 ~l~~~---sdg~i~iwd~~~~-~~~~~-~~~--~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-------~~~~~  881 (1092)
                      .+|+-   +.|.|.||++... ++... +.+  ....|+.+.|.|.|...||++++||.|++|.+..+       .+-..
T Consensus       593 rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~  672 (1012)
T KOG1445|consen  593 RVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKI  672 (1012)
T ss_pred             eEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCccee
Confidence            77654   3689999999743 32211 111  34578999999999999999999999999999764       34577


Q ss_pred             eccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcE
Q 001362          882 LEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL  959 (1092)
Q Consensus       882 l~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i  959 (1092)
                      +.+|...|+++.|+|= ...|++++.|-+|++||+.+.+     ....+.+|..   .|..++|||||+.+|+ +.||+|
T Consensus       673 lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHtd---qIf~~AWSpdGr~~AtVcKDg~~  744 (1012)
T KOG1445|consen  673 LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHTD---QIFGIAWSPDGRRIATVCKDGTL  744 (1012)
T ss_pred             eecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCcC---ceeEEEECCCCcceeeeecCceE
Confidence            8899999999999994 5789999999999999999854     3344556665   8999999999999999 899999


Q ss_pred             EEEEcCCceeeeeeccC-CCCCEEEEEEecCCCEEEEEECCC----cEEEEEcCCCceEEeeccccccCCCCccCcccce
Q 001362          960 AIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDG----TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus       960 ~lwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~Dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
                      ++|+..+++....-..+ -..+-..+.|.-||+++++.+.|.    .|.+||..+.....-........+.       ++
T Consensus       745 rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps-------~L  817 (1012)
T KOG1445|consen  745 RVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS-------PL  817 (1012)
T ss_pred             EEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc-------cc
Confidence            99999877643221222 144556788999999999888774    4888988766532111111111110       01


Q ss_pred             EEEECCCCCCEEEEEeCCCcEEEEeCCCCCCccccCCCCC
Q 001362         1035 AIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus      1035 ~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
                      -=.++++.+.+|++|-.|..|.+|++..+.|..-.+.|+.
T Consensus       818 vP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~  857 (1012)
T KOG1445|consen  818 VPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFM  857 (1012)
T ss_pred             cccccCCCceEEEecCCCceEEEEEecCCCceeeeccccc
Confidence            1125565677899999999999999999998766655554

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=1.4e-31  Score=273.08  Aligned_cols=290  Identities=15%  Similarity=0.192  Sum_probs=253.8

Q ss_pred             eecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccC-CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEE
Q 001362          391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  468 (1092)
                      .+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++   ++.+|..+|.+++|+++|.  .++|+|.|+.|+
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK  283 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK  283 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence            3789999999999999 999999999999999999987 66666   7889999999999999999  799999999999


Q ss_pred             EEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001362          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       469 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      +||+++|+++..|. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.+
T Consensus       284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS  361 (503)
T KOG0282|consen  284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS  361 (503)
T ss_pred             eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence            99999999999986 55678899998875 57999999999999999999999999999999999999999999999987


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---EEEEeCCCCCCCC
Q 001362          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL---LTTIDAGGGLPEN  625 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~v  625 (1092)
                      .    +..+++|+...+-.+.......  .....++..+|+++++++-+.|+.|.+|.+...-.   ...+.+|.....-
T Consensus       362 D----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys  435 (503)
T KOG0282|consen  362 D----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS  435 (503)
T ss_pred             c----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence            6    5579999998887776655544  34677899999999999999999999998654322   2344444433445


Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec
Q 001362          626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  705 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  705 (1092)
                      ..+.|||||.+|++|..||.+.+||..+.+.+..++.|...+..+.|.|.                     ....+++++
T Consensus       436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~---------------------e~Skvat~~  494 (503)
T KOG0282|consen  436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV---------------------EPSKVATCG  494 (503)
T ss_pred             eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC---------------------CcceeEecc
Confidence            67999999999999999999999999999999999999999999999964                     345689999


Q ss_pred             cccccceec
Q 001362          706 AENKSEVEK  714 (1092)
Q Consensus       706 ~d~~i~lw~  714 (1092)
                      .+|.|++|+
T Consensus       495 w~G~Ikiwd  503 (503)
T KOG0282|consen  495 WDGLIKIWD  503 (503)
T ss_pred             cCceeEecC
Confidence            999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.3e-30  Score=239.05  Aligned_cols=270  Identities=20%  Similarity=0.308  Sum_probs=239.8

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      ++..|+++|.++.|+-||+|.++++.|.+|++|+...|.+++   +..+|...|..++.+.|+.  .+++|+.|+.+.+|
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~vw   86 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQVW   86 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEEE
Confidence            477899999999999999999999999999999999998777   7889999999999999998  69999999999999


Q ss_pred             ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEccCCCEEEEEe
Q 001362          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      |+++|+.++.|.+|.+.|+.+.|+  .+...+++|+.|..+++||-++..  +++.+......|.++..+  +..+++++
T Consensus        87 DV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS  162 (307)
T KOG0316|consen   87 DVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS  162 (307)
T ss_pred             EcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence            999999999999999999999995  456799999999999999988654  455666666778777664  56677776


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001362          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1092)
                      .    +++++.||++.|+...-+-+     .+|+++.|+++++..++++.|+++++.|-++|+++....+|.....-..+
T Consensus       163 ~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc  233 (307)
T KOG0316|consen  163 V----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC  233 (307)
T ss_pred             c----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence            6    67799999999998777776     56999999999999999999999999999999999999988776666678


Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCc-eeeeeecCCCcc
Q 001362          629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPISTV  678 (1092)
Q Consensus       629 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~  678 (1092)
                      +++....++++|++||.+++||+.+...+..++.+... +..+++.|....
T Consensus       234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~  284 (307)
T KOG0316|consen  234 CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD  284 (307)
T ss_pred             eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence            88888999999999999999999999999998888877 788888865443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=4.7e-31  Score=245.58  Aligned_cols=291  Identities=16%  Similarity=0.220  Sum_probs=255.2

Q ss_pred             eecccCCCCceEEeec---CCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          328 QTLIEGSSSPMSMDFH---PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~s---pdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      .+-.||+.+|..++||   |+| ++|++++.|+.-.+-+-++|.-+.+                   +.||.+.|.+..+
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l   67 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL   67 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence            4568999999999998   578 6899999999999999999988876                   7799999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEec
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG  483 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~  483 (1092)
                      ..+..+-|+++.|-+-+|||.-+|..+.   .+ .|...|.+++|+.|.+  +|++|+.++.++|+|++..+ +...+.+
T Consensus        68 ~~na~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g  141 (334)
T KOG0278|consen   68 NKNATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG  141 (334)
T ss_pred             Cchhhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence            9999999999999999999999998776   33 5888999999999999  79999999999999998764 5678899


Q ss_pred             CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001362          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      |.+.|..+.|...  .+.+++.+.|++||+||.+++.....+... .+|+++.+++||++|..+.     .+.|..||..
T Consensus       142 htg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdak  213 (334)
T KOG0278|consen  142 HTGGIRTVLWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAK  213 (334)
T ss_pred             CCCcceeEEEecc--CceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEeccc
Confidence            9999999998653  367888899999999999999988877654 4889999999999988775     3349999999


Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001362          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  643 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  643 (1092)
                      +-..++.+....    .|.+..++|+...+++|++|..++.||..+|..+.... .++..+|.|+.|+|+|...++|+.|
T Consensus       214 sf~~lKs~k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~yAsGSED  288 (334)
T KOG0278|consen  214 SFGLLKSYKMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGELYASGSED  288 (334)
T ss_pred             cccceeeccCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCceeeccCCC
Confidence            999988887644    78999999999999999999999999999999988852 2334679999999999999999999


Q ss_pred             CeEEEEECCCCcee
Q 001362          644 NRIKILETPESNSV  657 (1092)
Q Consensus       644 g~i~iw~~~~~~~~  657 (1092)
                      |+|++|....++..
T Consensus       289 GTirlWQt~~~~~~  302 (334)
T KOG0278|consen  289 GTIRLWQTTPGKTY  302 (334)
T ss_pred             ceEEEEEecCCCch
Confidence            99999998766443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.9e-31  Score=259.36  Aligned_cols=276  Identities=16%  Similarity=0.252  Sum_probs=234.5

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001362          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      ...|.|+.+  |...+++|..|.+|+|||..+-.+++   .+.||++.|.|+.|.  .+  .+++|+.|.+|+|||+++|
T Consensus       197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             CCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccCC
Confidence            457889888  57789999999999999999987776   688999999999985  45  8999999999999999999


Q ss_pred             ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001362          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      +++.++-+|...|..+.|+    ..++++++.|.++.+||+......   ..+.+|...|..+.|+  .+++++++.   
T Consensus       268 e~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg---  338 (499)
T KOG0281|consen  268 EPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG---  338 (499)
T ss_pred             chhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC---
Confidence            9999999999999999983    359999999999999999877643   3567888888888875  458988865   


Q ss_pred             CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001362          553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                       +.+|++|+..+++.++++.+|.   ..|.|+.+  .++++++|+.|.+|++||++.|.++..+++|..  -|.++.|. 
T Consensus       339 -DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd-  409 (499)
T KOG0281|consen  339 -DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD-  409 (499)
T ss_pred             -CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec-
Confidence             7789999999999999999998   77887776  578999999999999999999999999987754  58899996 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCce---------eeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001362          633 NGTLLAVIANENRIKILETPESNS---------VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1092)
Q Consensus       633 ~~~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1092)
                       .+.+++|..||+|++||+..+..         +..+..|.+.|..+.|                        |...+++
T Consensus       410 -~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF------------------------D~fqIvs  464 (499)
T KOG0281|consen  410 -NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF------------------------DEFQIIS  464 (499)
T ss_pred             -CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee------------------------cceEEEe
Confidence             67899999999999999987632         3344456667766666                        4667899


Q ss_pred             eccccccceeccccccCccc
Q 001362          704 VEAENKSEVEKPLFARPSEC  723 (1092)
Q Consensus       704 ~~~d~~i~lw~~~~~~~~~~  723 (1092)
                      ++.|.+|.+||+..+.+...
T Consensus       465 ssHddtILiWdFl~~~~~~~  484 (499)
T KOG0281|consen  465 SSHDDTILIWDFLNGPPSAA  484 (499)
T ss_pred             ccCCCeEEEEEcCCCCcccc
Confidence            99999999999876555433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=7.9e-29  Score=304.14  Aligned_cols=294  Identities=14%  Similarity=0.172  Sum_probs=238.4

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CC
Q 001362          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG  408 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg  408 (1092)
                      +..|.+.|++++|+|+|+ ++|+|+.|+.|+|||..+...... .          .......+. +...|.+++|+| ++
T Consensus       479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~  545 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIK  545 (793)
T ss_pred             ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCC
Confidence            456999999999999998 699999999999999864211000 0          000000122 346899999988 58


Q ss_pred             CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001362          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      .+||+++.||+|++||+.+++.+.   .+.+|.+.|++++|+| ++.  +|++|+.|++|++||+.++..+..+..+ ..
T Consensus       546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~  619 (793)
T PLN00181        546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN  619 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence            899999999999999999876554   6789999999999997 667  8999999999999999999999888754 57


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-
Q 001362          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-  565 (1092)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~-  565 (1092)
                      |.++.|.+ +++.+|++|+.||.|++||++... ....+..|...|.++.|. ++.++++++.    ++.|++||+..+ 
T Consensus       620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~  693 (793)
T PLN00181        620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSI  693 (793)
T ss_pred             eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCc
Confidence            88888853 467899999999999999998765 456777888899999997 7888988875    667999998743 


Q ss_pred             -----eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC-----------CCCCCCCceEE
Q 001362          566 -----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRIC  629 (1092)
Q Consensus       566 -----~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~  629 (1092)
                           ..+..+.+|.   ..+..++|+|++.++++|+.|+.|++|+......+.....           ..+...|.+++
T Consensus       694 ~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~  770 (793)
T PLN00181        694 SGINETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC  770 (793)
T ss_pred             cccCCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence                 5677888877   8899999999999999999999999999876654433221           12234589999


Q ss_pred             EccCCCEEEEEeCCCeEEEEEC
Q 001362          630 FNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       630 ~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      |+|++..|++++.+|.|+||++
T Consensus       771 ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        771 WRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EcCCCCeEEEecCCCcEEEEec
Confidence            9999999999999999999986

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=3.1e-30  Score=248.45  Aligned_cols=290  Identities=17%  Similarity=0.221  Sum_probs=239.8

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001362          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      ..+.+.+..|+|||+++++++-||.|.+|++..++...+-+..+..         .  ++       -+..+|.|+.||.
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd---------~--fM-------Mmd~aVlci~FSR  273 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD---------N--FM-------MMDDAVLCISFSR  273 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc---------c--ee-------ecccceEEEeecc
Confidence            4567889999999999999999999999998876553333222211         1  11       1678999999999


Q ss_pred             CCCEEEEEe-CCeEEEEEcCCceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeE
Q 001362          813 NDAYLFSAS-GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT  890 (1092)
Q Consensus       813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~  890 (1092)
                      |...+|+|+ ||.|++|.+.+|.+++.|. .|...|+|+.||. |+..+.+++.|.+++|.-+.+|++++.++||++-|+
T Consensus       274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn  352 (508)
T KOG0275|consen  274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN  352 (508)
T ss_pred             cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence            999999998 8999999999999999997 7999999999999 889999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC--EEEEEeCCcEEEEEcCCce
Q 001362          891 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT--RFLLVHETHLAIYEAEELT  968 (1092)
Q Consensus       891 ~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~--~la~~~d~~i~lwd~~~~~  968 (1092)
                      ...|++||.++++++.||+|++|+.++.+     ++.++.... ...+|.++-.-|.+.  ++++...++++|.++. |+
T Consensus       353 ~a~ft~dG~~iisaSsDgtvkvW~~Ktte-----C~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQ  425 (508)
T KOG0275|consen  353 EATFTDDGHHIISASSDGTVKVWHGKTTE-----CLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQ  425 (508)
T ss_pred             ceEEcCCCCeEEEecCCccEEEecCcchh-----hhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ce
Confidence            99999999999999999999999999966     333332211 113578888877653  4444567889999985 77


Q ss_pred             eeeeeccCC--CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEE
Q 001362          969 CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1046 (1092)
Q Consensus       969 ~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l 1046 (1092)
                      .++.+..|.  .+.-.+.+.||.|.++...+.|+.++-+.+.+|++...+..+.-.          ++.++-|| ..+.+
T Consensus       426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd----------vIGl~HHP-HqNll  494 (508)
T KOG0275|consen  426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD----------VIGLTHHP-HQNLL  494 (508)
T ss_pred             EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc----------ccccccCc-ccchh
Confidence            887766554  556667889999999999999999999999999999887743322          33477888 57899


Q ss_pred             EEEeCCCcEEEEe
Q 001362         1047 AVGLTNGEVYVIE 1059 (1092)
Q Consensus      1047 ~~~~~dg~v~~w~ 1059 (1092)
                      |+=+.||.+++|.
T Consensus       495 AsYsEDgllKLWk  507 (508)
T KOG0275|consen  495 ASYSEDGLLKLWK  507 (508)
T ss_pred             hhhcccchhhhcC
Confidence            9999999999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=2.9e-28  Score=265.52  Aligned_cols=285  Identities=23%  Similarity=0.342  Sum_probs=253.3

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|..+|.+++|+|++++|++++.++.|++|++.+++...   .+..|...+..+.|+|+++  .+++++.|+.|++||
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~   79 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD   79 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence            56899999999999999999999999999999999876433   5678999999999999998  799999999999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      +.+++.+..+..|...+.++.|.+.  +.++++++.+|.+++||+.+.+....+..+...+.+++|+|++.++++++.  
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  155 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ--  155 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence            9999899999999999999999664  578888888999999999988888888888889999999999988888763  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001362          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                        ++.|++||..+++.+..+..+.   ..+.++.|+|+++.+++++.++.+++||+.+++.+..+..+.  ..+.+++|+
T Consensus       156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~  228 (289)
T cd00200         156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFS  228 (289)
T ss_pred             --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEc
Confidence              5569999999999888888766   789999999999999999999999999999988888775443  368999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccc
Q 001362          632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1092)
Q Consensus       632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1092)
                      |++.++++++.+|.+++|+..++.....+..+...+.++.++                      ++++.+++++.|+.++
T Consensus       229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~~l~~~~~d~~i~  286 (289)
T cd00200         229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS----------------------PDGKRLASGSADGTIR  286 (289)
T ss_pred             CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC----------------------CCCCEEEEecCCCeEE
Confidence            998888888889999999999988888888888889888886                      6788899999999999


Q ss_pred             eec
Q 001362          712 VEK  714 (1092)
Q Consensus       712 lw~  714 (1092)
                      +|+
T Consensus       287 iw~  289 (289)
T cd00200         287 IWD  289 (289)
T ss_pred             ecC
Confidence            996

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=3.8e-30  Score=257.13  Aligned_cols=297  Identities=16%  Similarity=0.228  Sum_probs=258.5

Q ss_pred             cCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001362          320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1092)
Q Consensus       320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V  399 (1092)
                      +.+|..+...|..|.++|..+.|-++.. .|++|+.|..|++|++..++....                 ..|.|..++|
T Consensus       161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i  222 (459)
T KOG0288|consen  161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI  222 (459)
T ss_pred             cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence            5678889999999999999999999966 489999999999999988763221                 1277888999


Q ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001362          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      +++.|.++++++++++.|+.+++|++...+...   ++.||++.|+++.|.....  .+++|+.|.+|++||+..+.|.+
T Consensus       223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k  297 (459)
T KOG0288|consen  223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK  297 (459)
T ss_pred             ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence            999999999999999999999999999876555   7889999999999998776  59999999999999999999988


Q ss_pred             EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001362          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                      ++- ....+..|+..    ...+++|-.|++|++||.++.........++ .|+++..+++|..+.+++.    +.++.+
T Consensus       298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v  367 (459)
T KOG0288|consen  298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV  367 (459)
T ss_pred             ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence            774 33445566553    3578999999999999999999988888776 9999999999999999975    667999


Q ss_pred             EeCCCCeEEEEEeecccc-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001362          560 WNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       560 wd~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  638 (1092)
                      .|.++.+....+...... ....+.+.|+|++.|+++||.||.|+||++.++++...+......+.|.+++|+|.|..++
T Consensus       368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll  447 (459)
T KOG0288|consen  368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL  447 (459)
T ss_pred             eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence            999999988887654321 1347889999999999999999999999999999999998776666799999999999999


Q ss_pred             EEeCCCeEEEE
Q 001362          639 VIANENRIKIL  649 (1092)
Q Consensus       639 ~~~~dg~i~iw  649 (1092)
                      +++.++.+.+|
T Consensus       448 sadk~~~v~lW  458 (459)
T KOG0288|consen  448 SADKQKAVTLW  458 (459)
T ss_pred             cccCCcceEec
Confidence            99999999998

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.4e-29  Score=253.97  Aligned_cols=286  Identities=19%  Similarity=0.235  Sum_probs=243.1

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001362          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  409 (1092)
                      ...|. .|++++|||...+=+|+.+. -.+.||+..+...+++                   +..-...|.++.|-.||+
T Consensus        23 ~ke~~-~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~   81 (487)
T KOG0310|consen   23 HKEHN-SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGR   81 (487)
T ss_pred             ccccC-cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCe
Confidence            34555 99999999966544454433 6799999988776653                   223457899999999999


Q ss_pred             EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeE
Q 001362          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  489 (1092)
                      +||+|...|.|+|+|+.+...++   .+.+|+.+|..+.|+|++.+ .+++|+.|+.+++||+.+......+.+|++.|.
T Consensus        82 LlaaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR  157 (487)
T KOG0310|consen   82 LLAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR  157 (487)
T ss_pred             EEEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeE
Confidence            99999999999999977654455   57899999999999999887 899999999999999999998779999999999


Q ss_pred             EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-EE
Q 001362          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IK  568 (1092)
Q Consensus       490 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~  568 (1092)
                      +.+++|. ++++++||+.||.|++||.+.......--.|+.+|..+.+-|.|..+++++.     +.+++||+.+|. .+
T Consensus       158 ~g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-----n~vkVWDl~~G~qll  231 (487)
T KOG0310|consen  158 CGDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-----NSVKVWDLTTGGQLL  231 (487)
T ss_pred             eeccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-----CeEEEEEecCCceeh
Confidence            9999876 4579999999999999999998766666678899999999999999999874     359999999554 44


Q ss_pred             EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001362          569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  648 (1092)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  648 (1092)
                      ..+..|.   ..|+|+.+..++..|++++-|+.|++||+.+.+.+..+...+   +|.+++.+|++..+++|..||.+.+
T Consensus       232 ~~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  232 TSMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             hhhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeee
Confidence            4444466   899999999999999999999999999999999999987764   4899999999999999999998887


Q ss_pred             EECC
Q 001362          649 LETP  652 (1092)
Q Consensus       649 w~~~  652 (1092)
                      -+..
T Consensus       306 rr~~  309 (487)
T KOG0310|consen  306 RRRE  309 (487)
T ss_pred             ehhh
Confidence            6433

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.4e-28  Score=234.51  Aligned_cols=316  Identities=17%  Similarity=0.199  Sum_probs=244.4

Q ss_pred             cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeE-EeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001362          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-IRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~-~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l  402 (1092)
                      ......|..|+..+.+.+|||||. |+|+|+.|.+|+|.|++.--... ..++..=+.... .+.. ..+..|.++|+++
T Consensus       102 ~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~-hPvI-RTlYDH~devn~l  178 (430)
T KOG0640|consen  102 EYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQAR-HPVI-RTLYDHVDEVNDL  178 (430)
T ss_pred             ccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccC-CceE-eehhhccCcccce
Confidence            445567889999999999999998 89999999999999997210000 000000011111 1111 2377899999999


Q ss_pred             EECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-
Q 001362          403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-  481 (1092)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-  481 (1092)
                      .|+|....|++|+.|++|+++|...-...+....+ ....+|.++.|+|.|.  +|+.|....++++||+++-++...- 
T Consensus       179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfvsan  255 (430)
T KOG0640|consen  179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSAN  255 (430)
T ss_pred             eecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecC
Confidence            99999999999999999999999765433332222 2456899999999999  7889999999999999998886544 


Q ss_pred             --ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-C-CCceEEEEEccCCCEEEEEecCCCCceeE
Q 001362          482 --EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-P-GLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       482 --~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                        .+|.+.|+++.++  +.+.+.++++.||.|++||--+.+++.++.. | +..|.+..|..+|+++++.+.    +..+
T Consensus       256 Pd~qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~v  329 (430)
T KOG0640|consen  256 PDDQHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTV  329 (430)
T ss_pred             cccccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----ccee
Confidence              4689999999985  4668999999999999999888888776543 3 347899999999999999875    7789


Q ss_pred             EEEeCCCCeEEEEEeeccccCC--ceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001362          558 VEWNESEGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       558 ~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      ++|.+.+++.+..+.|......  --+...|+....+++.-. ..+.++-||.+++..+..+.. ++...+..+.-||.+
T Consensus       330 kLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~  408 (430)
T KOG0640|consen  330 KLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVE  408 (430)
T ss_pred             eeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCC
Confidence            9999999999999987631111  123345777777777644 457899999999887766654 345678999999999


Q ss_pred             CEEEEEeCCCeEEEEECC
Q 001362          635 TLLAVIANENRIKILETP  652 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~  652 (1092)
                      .-+.+++.|..+++|-..
T Consensus       409 p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  409 PAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             Cceeeecccceeeeeeec
Confidence            999999999999999643

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.5e-28  Score=276.64  Aligned_cols=307  Identities=19%  Similarity=0.250  Sum_probs=250.8

Q ss_pred             cCCCCceEEeecCCCceEEEEEc--CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~--~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  409 (1092)
                      .+...|..++.+|||. .+|+|+  .|+.++||+.+.--.    +.+.+|..   .+-....+..|.+.|+|+.|||||+
T Consensus        11 H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~   82 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGS   82 (942)
T ss_pred             cCCeeEEEEEecCCce-eEecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCC
Confidence            3456789999999998 589999  899999999764210    00111111   1111223678999999999999999


Q ss_pred             EEEEEeCCCEEEEEEccC---C------------CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001362          410 LLGVAYSKHIVQLYAYHG---G------------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~---~------------~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  474 (1092)
                      |||+|++|+.|.||+...   +            +..+....+.+|.+.|..++|+|++.  +|++++.|++|.|||..+
T Consensus        83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~t  160 (942)
T KOG0973|consen   83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKT  160 (942)
T ss_pred             eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEcccc
Confidence            999999999999999883   1            11234557889999999999999999  899999999999999999


Q ss_pred             CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC------CceEEEEEccCCCEEEEEe
Q 001362          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------LGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------~~i~~~~~s~dg~~l~~~~  548 (1092)
                      .+.+..+.+|...|..+.|.  |-|++|++-+.|++|++|+...-+....+..+-      .-+..+.|||||.+|++..
T Consensus       161 F~~~~vl~~H~s~VKGvs~D--P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  161 FELLKVLRGHQSLVKGVSWD--PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             ceeeeeeecccccccceEEC--CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence            99999999999999999995  567999999999999999977755555544432      2478899999999999988


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC-----CC------------EEEEEeCCCcEEEEECCCCc
Q 001362          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KD------------QILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~------------~l~~~s~dg~i~iwd~~~~~  611 (1092)
                      .-+.+...+.|.+..+.+.-..+.||.   .++.++.|+|.     .+            .+++|+.|++|-||.....+
T Consensus       239 A~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R  315 (942)
T KOG0973|consen  239 AVNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR  315 (942)
T ss_pred             hccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence            777778889999998888889999999   89999999983     11            46779999999999998887


Q ss_pred             eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001362          612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      ++.....-.. ..|..++|+|||..|++++.||+|.++.+...
T Consensus       316 Pl~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  316 PLFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             chhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            7765543222 46899999999999999999999999998754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.5e-27  Score=292.75  Aligned_cols=322  Identities=14%  Similarity=0.176  Sum_probs=247.7

Q ss_pred             CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC----Ccc
Q 001362          356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDA  431 (1092)
Q Consensus       356 d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~  431 (1092)
                      +|.+++|+..+.......              ...-+..|.+.|.+++|+|+|++||+|+.|+.|+||+..+.    ...
T Consensus       457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~  522 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI  522 (793)
T ss_pred             hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence            577888887765443211              11114569999999999999999999999999999998642    111


Q ss_pred             c-ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCe
Q 001362          432 R-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK  510 (1092)
Q Consensus       432 ~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~  510 (1092)
                      . ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|...|++++|++. ++.+|++|+.||+
T Consensus       523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~  599 (793)
T PLN00181        523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS  599 (793)
T ss_pred             ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence            1 112233 3467999999986433 7999999999999999999999999999999999999753 5679999999999


Q ss_pred             EEEEEcCCCCceEEecCCCCceEEEEEc-cCCCEEEEEecCCCCceeEEEEeCCCCe-EEEEEeeccccCCceEEEEEcC
Q 001362          511 IKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       511 i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~p  588 (1092)
                      |++||+.+......+..+ ..+.++.|+ ++|.++++++.    ++.|++||+.++. .+..+.+|.   ..|.++.|. 
T Consensus       600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~-  670 (793)
T PLN00181        600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV-  670 (793)
T ss_pred             EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-
Confidence            999999988777766644 578889995 57899999876    6679999998765 456677776   889999997 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCC------ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeeccc
Q 001362          589 AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV  662 (1092)
Q Consensus       589 ~~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  662 (1092)
                      ++.++++++.|++|++||+..+      ..+..+..|  ...+..++|+|++.+|++|+.|+.+++|+............
T Consensus       671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~  748 (793)
T PLN00181        671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF  748 (793)
T ss_pred             CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence            6789999999999999999743      456666655  34578899999999999999999999999765432221110


Q ss_pred             c-cCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEE
Q 001362          663 L-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT  741 (1092)
Q Consensus       663 ~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~  741 (1092)
                      . ...+                                                        ..  .....+...|.+++
T Consensus       749 ~~~~~~--------------------------------------------------------~~--~~~~~~~~~V~~v~  770 (793)
T PLN00181        749 KTIDPV--------------------------------------------------------SG--LEVDDASQFISSVC  770 (793)
T ss_pred             ccCCcc--------------------------------------------------------cc--cccCCCCcEEEEEE
Confidence            0 0000                                                        00  00012556799999


Q ss_pred             EecCCcEEEEeecCCeeEEEee
Q 001362          742 YNNGGQAIFALASNGVHLMWRW  763 (1092)
Q Consensus       742 ~s~~g~~l~~~~~dg~i~lw~~  763 (1092)
                      |++++..+++++.+|.|++|++
T Consensus       771 ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        771 WRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EcCCCCeEEEecCCCcEEEEec
Confidence            9999999999999999999985

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=6.4e-28  Score=226.77  Aligned_cols=279  Identities=16%  Similarity=0.246  Sum_probs=242.7

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-  406 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-  406 (1092)
                      +.+++|...|.+|+|+.+|++ ||+|+.|+++.+|+++..+.....                 ...+|.+.|..++|+| 
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~   75 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPK   75 (313)
T ss_pred             HHhhhhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCC
Confidence            567899999999999999984 999999999999999988555432                 2678999999999998 


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001362          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  486 (1092)
                      ...++++++.|.+|++||...+++....   ... +.=..+.|+|+|.  +++.++.|..|...|.++.+.+...+ ...
T Consensus        76 ~~d~~atas~dk~ir~wd~r~~k~~~~i---~~~-~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~  148 (313)
T KOG1407|consen   76 HPDLFATASGDKTIRIWDIRSGKCTARI---ETK-GENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKF  148 (313)
T ss_pred             CCcceEEecCCceEEEEEeccCcEEEEe---ecc-CcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccc
Confidence            6789999999999999999999877633   222 2334578999999  79999999999999999888776654 445


Q ss_pred             CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001362          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1092)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1092)
                      .++-++|+.  ++.+++.....|+|.|..+...+++..+..|...+.++.|+|+|+++++|+.    +..+.+||+..--
T Consensus       149 e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELi  222 (313)
T KOG1407|consen  149 EVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELI  222 (313)
T ss_pred             eeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhh
Confidence            677788863  4467777778899999999999999999999999999999999999999987    6679999999999


Q ss_pred             EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001362          567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  643 (1092)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  643 (1092)
                      +++.+..+.   -+|..+.|+-+|++|++||+|..|-|=++++|..+..++..+.   ...|+|+|...+||.+.+|
T Consensus       223 C~R~isRld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  223 CERCISRLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             hheeecccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCCceeeEEecC
Confidence            999999888   8999999999999999999999999999999999999987654   6899999999999998775

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=1.7e-27  Score=224.62  Aligned_cols=287  Identities=10%  Similarity=0.094  Sum_probs=238.8

Q ss_pred             ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001362          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      .|+||..+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+                   +.||++.|.|+....+.
T Consensus         5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s   64 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS   64 (327)
T ss_pred             ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence            4789999999999999999 899999999999999999999987                   78999999999999999


Q ss_pred             CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-----CCCcEEEEECC-------CCc
Q 001362          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAV-------TGS  476 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-----~d~~i~vwd~~-------~~~  476 (1092)
                      +++++|+.|.++++||+++|+++..   + ....+|..+.|+++|.  +++.+.     ..+.|.++|++       ..+
T Consensus        65 ~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e  138 (327)
T KOG0643|consen   65 KHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE  138 (327)
T ss_pred             ceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence            9999999999999999999987763   3 3456899999999998  343332     34679999988       455


Q ss_pred             eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001362          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  555 (1092)
Q Consensus       477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~  555 (1092)
                      +...+..+...++.+.|.+.  +++|++|..||.|..||++++.... ....|...|+.+.+++|..++++++.    +.
T Consensus       139 p~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dt  212 (327)
T KOG0643|consen  139 PYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DT  212 (327)
T ss_pred             ceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cc
Confidence            67888888899999999664  4799999999999999999976655 45778889999999999999999986    55


Q ss_pred             eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEE--EECCCC------------ceEEEEeCCCC
Q 001362          556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI--WDMNKV------------QLLTTIDAGGG  621 (1092)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~i--wd~~~~------------~~~~~~~~~~~  621 (1092)
                      +-.+||..+-+.++++....    +|++.+++|....++.|+.....-+  =+.+.|            +.+..+..  +
T Consensus       213 takl~D~~tl~v~Kty~te~----PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG--H  286 (327)
T KOG0643|consen  213 TAKLVDVRTLEVLKTYTTER----PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG--H  286 (327)
T ss_pred             cceeeeccceeeEEEeeecc----cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc--c
Confidence            68999999999999998754    9999999999888888764322221  122222            33444444  4


Q ss_pred             CCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001362          622 LPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      ..+|++++|+|+|+..++|+.||.|++.....
T Consensus       287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            56799999999999999999999999986553

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=6.5e-29  Score=231.38  Aligned_cols=286  Identities=14%  Similarity=0.183  Sum_probs=254.0

Q ss_pred             ecCCCCcEEEEEECC---CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEE
Q 001362          392 VRDPGVSVNRVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1092)
Q Consensus       392 l~~h~~~V~~l~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  468 (1092)
                      ..||+.+|..++|||   +|-+|++++.|+.=.+-+-++|.-+.   ++.||.+.|+......+..  ..++++.|-+.+
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadftak   84 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTAK   84 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchhh
Confidence            678999999999996   89999999999988887878887666   8899999999999998887  789999999999


Q ss_pred             EEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEE
Q 001362          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       469 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      |||.-+|..+++|. |...|.+++|  +.|..+|++|+.++.+|++|++..+. ...+.+|.+.|..+.|....+.+++.
T Consensus        85 vw~a~tgdelhsf~-hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS  161 (334)
T KOG0278|consen   85 VWDAVTGDELHSFE-HKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS  161 (334)
T ss_pred             hhhhhhhhhhhhhh-hhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence            99999999999996 9999999999  55778999999999999999987664 55788999999999999999999987


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001362          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                      +.    ++.|++||.+++..++++...    .+|.++.++++|.++.+ ...+.|.+||..+..++.....+..   |.+
T Consensus       162 ad----d~tVRLWD~rTgt~v~sL~~~----s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~n---V~S  229 (334)
T KOG0278|consen  162 AD----DKTVRLWDHRTGTEVQSLEFN----SPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCN---VES  229 (334)
T ss_pred             cc----CCceEEEEeccCcEEEEEecC----CCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCccc---ccc
Confidence            54    667999999999999998864    48999999999876554 4567899999999999998877644   788


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCceeeec-ccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecc
Q 001362          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  706 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~  706 (1092)
                      ..++|+...+++|++|..++.||..++..+... ++|.++|-|+.|+                      |||...++|+.
T Consensus       230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS----------------------PdGE~yAsGSE  287 (334)
T KOG0278|consen  230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS----------------------PDGELYASGSE  287 (334)
T ss_pred             ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC----------------------CCCceeeccCC
Confidence            999999999999999999999999999998885 8999999999996                      78999999999


Q ss_pred             ccccceecccccc
Q 001362          707 ENKSEVEKPLFAR  719 (1092)
Q Consensus       707 d~~i~lw~~~~~~  719 (1092)
                      ||+||+|.....+
T Consensus       288 DGTirlWQt~~~~  300 (334)
T KOG0278|consen  288 DGTIRLWQTTPGK  300 (334)
T ss_pred             CceEEEEEecCCC
Confidence            9999999976443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2e-26  Score=224.25  Aligned_cols=287  Identities=16%  Similarity=0.240  Sum_probs=238.0

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001362          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  409 (1092)
                      +..-.+.|.++.|+++|. ++++++.|.+++|||..+|+.+++                   +..++-.|..+.|.....
T Consensus        10 f~~~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~   69 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSN   69 (311)
T ss_pred             cccCCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCc
Confidence            444566999999999998 577788899999999999998876                   555777889999988888


Q ss_pred             EEEEEeC--CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001362          410 LLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       410 ~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      .++.++.  |.+|+.-++.+.+.++   -+.||...|++++.+|-+.  .+++++.|++|++||++..++...+.....+
T Consensus        70 ~~i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p  144 (311)
T KOG1446|consen   70 TVIHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP  144 (311)
T ss_pred             eEEEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc
Confidence            8777776  7899999999998777   7899999999999999998  8999999999999999999888877655555


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEec---CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001362          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      +.  +|  ++.|-++|++...+.|++||++...  +-.++.   ......+.+.|||||++++.+..    .+.+++.|.
T Consensus       145 i~--Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDA  216 (311)
T KOG1446|consen  145 IA--AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDA  216 (311)
T ss_pred             ce--eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEc
Confidence            54  45  5577888888888899999998753  223332   33557899999999999998865    667999999


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001362          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      -+|..+.++.++......-...+|+||++++++|+.||+|.+|++++|..+..+... ....+.++.|+|.-.++++++.
T Consensus       217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecCc
Confidence            999999999998744444467889999999999999999999999999999999875 3356889999998777776654


Q ss_pred             CCeEEEEECC
Q 001362          643 ENRIKILETP  652 (1092)
Q Consensus       643 dg~i~iw~~~  652 (1092)
                        .+.+|-..
T Consensus       296 --~l~fw~p~  303 (311)
T KOG1446|consen  296 --NLVFWLPD  303 (311)
T ss_pred             --eEEEEecc
Confidence              67777544

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=3.5e-27  Score=222.42  Aligned_cols=286  Identities=13%  Similarity=0.158  Sum_probs=240.1

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      ++.||+.+++.+.++.+|.+|.+++.|.+..+|--..|+.+.   ++.||++.|+|++..-+.+  .+++|+.|.++++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW   79 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence            488999999999999999999999999999999998898766   8899999999999999999  89999999999999


Q ss_pred             ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEec-----CCeEEEEEcC-------CCCceEEecCCCCceEEEEEc
Q 001362          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYD-------SLGARVDYDAPGLGCTRMAYS  538 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~vwd~~-------~~~~~~~~~~~~~~i~~~~~s  538 (1092)
                      |+++|+++..++ ...+|..+.|++  +|.+++....     .+.|.++|++       ..++...+..+...++.+-|+
T Consensus        80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg  156 (327)
T KOG0643|consen   80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG  156 (327)
T ss_pred             EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence            999999999997 667899999965  4455555543     3569999988       445567788888899999999


Q ss_pred             cCCCEEEEEecCCCCceeEEEEeCCCCeE-EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001362          539 ANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                      |-+++|++|..    ++.|.+||.++|.. +..-..|.   ..|+.++++++..++++++.|.+-++||..+-+.++++.
T Consensus       157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             ccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence            99999999976    55699999999854 44445555   799999999999999999999999999999999999987


Q ss_pred             CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC--------------CCCceeeecccccCceeeeeecCCCccccccc
Q 001362          618 AGGGLPENPRICFNKNGTLLAVIANENRIKILET--------------PESNSVDAAGVLSDNLRKLSVNPISTVTGAGI  683 (1092)
Q Consensus       618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  683 (1092)
                      ..   .++++.+++|-..+++.|+.....-+=..              -..+.+...++|-++|++++++          
T Consensus       230 te---~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh----------  296 (327)
T KOG0643|consen  230 TE---RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH----------  296 (327)
T ss_pred             ec---ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC----------
Confidence            65   35899999998888877765333222211              1224566778999999999997          


Q ss_pred             cCCceeecCCCCCCCccceeeccccccceeccc
Q 001362          684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~  716 (1092)
                                  |+|+..++|+.||.||+..++
T Consensus       297 ------------PdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  297 ------------PDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             ------------CCCcccccCCCCceEEEEEec
Confidence                        789999999999999986544

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5e-28  Score=265.60  Aligned_cols=310  Identities=16%  Similarity=0.199  Sum_probs=224.5

Q ss_pred             ceeeecc-cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          325 TVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       325 ~~~~~l~-~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ...+.+. .|.+.||++.||+||+ |||+|+.|+.|+||.+...+.......   +.. |... .   +.. .+.+..+.
T Consensus       257 ~~~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~---~~~-~~~~-~---~~~-~s~~~p~~  326 (712)
T KOG0283|consen  257 TVVQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEG---DSS-CMYF-E---YNA-NSQIEPST  326 (712)
T ss_pred             EEeeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhccccc---ccc-hhhh-h---hhh-ccccCccc
Confidence            4456666 9999999999999999 699999999999999977544221000   000 0000 0   000 00011111


Q ss_pred             ECC---CCC--EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001362          404 WSP---DGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       404 ~sp---dg~--~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      -++   .++  ..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++   +|++++.|++|++|++....|+
T Consensus       327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL  403 (712)
T KOG0283|consen  327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECL  403 (712)
T ss_pred             cccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCccee
Confidence            111   011  11112222222222211111123344788999999999999876   6999999999999999999999


Q ss_pred             EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001362          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1092)
                      +.|. |...|+|++|+|.. .+++++|+-||.+|+|++...+...-.. ...-|++++|.|||++.++|+.    +|.++
T Consensus       404 ~~F~-HndfVTcVaFnPvD-DryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~----~G~C~  476 (712)
T KOG0283|consen  404 KVFS-HNDFVTCVAFNPVD-DRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTF----NGYCR  476 (712)
T ss_pred             eEEe-cCCeeEEEEecccC-CCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEe----ccEEE
Confidence            9996 99999999999984 5899999999999999987655544433 3468999999999999999987    66799


Q ss_pred             EEeCCCCeEEEEEeeccc-----cCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001362          559 EWNESEGAIKRTYQGLQL-----QHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       559 iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~~p~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      +|+....+....+.-+..     ....|+.+.|.|.. ..+++.+.|..|||+|.++..++..+.+......-....|+.
T Consensus       477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~  556 (712)
T KOG0283|consen  477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS  556 (712)
T ss_pred             EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence            999988777665543321     12379999998754 358889999999999999999998888765555556789999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCC
Q 001362          633 NGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       633 ~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      ||++++++++|..|++|+....
T Consensus       557 Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  557 DGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             CCCEEEEeecCceEEEEeCCCC
Confidence            9999999999999999998654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=2e-27  Score=235.23  Aligned_cols=282  Identities=20%  Similarity=0.358  Sum_probs=233.5

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC---
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG---  408 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg---  408 (1092)
                      -|.+.|.++...  ++ .+.+|+.||.++|||.. |+....                   +.||.++|.+++|--..   
T Consensus       103 ~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v~~v~~n~~~  159 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSVAWVIKNSSS  159 (423)
T ss_pred             cchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeeeEEEecCCcc
Confidence            477899999998  45 58999999999999976 555543                   78999999988886433   


Q ss_pred             CEEEEEeCCCEEEEEEccCCCccc-ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC--------------
Q 001362          409 SLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--------------  473 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~--------------  473 (1092)
                      ..+++++.|.++++|.++.++... ......||...|.+++..++|.  .+++|+.|.+|.||+.+              
T Consensus       160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r  237 (423)
T KOG0313|consen  160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRR  237 (423)
T ss_pred             ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhh
Confidence            369999999999999998776532 2223459999999999999999  89999999999999932              


Q ss_pred             -----------CCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCC
Q 001362          474 -----------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR  542 (1092)
Q Consensus       474 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~  542 (1092)
                                 ++.++-++.||.++|.++.|.+   ...+++++.|.+|+.||+.+++....+... ....++.++|..+
T Consensus       238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~  313 (423)
T KOG0313|consen  238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSK  313 (423)
T ss_pred             hhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccc
Confidence                       1224567889999999999965   358999999999999999999888776654 4788999999999


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCe---EEEEEeeccccCCceEEEEEcCCCCE-EEEEeCCCcEEEEECCCCc-eEEEEe
Q 001362          543 RLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQ-LLTTID  617 (1092)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~s~dg~i~iwd~~~~~-~~~~~~  617 (1092)
                      +|++++.    +..+++||++++.   ....+.+|.   +.|.++.|+|...+ |++|+.|+++++||+++.+ ++..+.
T Consensus       314 Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~  386 (423)
T KOG0313|consen  314 LLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA  386 (423)
T ss_pred             eeeecCC----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence            9999987    6679999998764   356778888   89999999998654 5679999999999999877 888888


Q ss_pred             CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001362          618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      .|.  ..|.++.|+. +.++++|+.|.+|+|+...
T Consensus       387 ~h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  387 GHN--DKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             cCC--ceEEEEeccC-CceEEeccCcceEEEeccc
Confidence            764  4588888875 6789999999999998654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.5e-26  Score=209.58  Aligned_cols=308  Identities=18%  Similarity=0.227  Sum_probs=237.4

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEE-eeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      .++.+|.... .|.+|+|+|.|. |.|+|+..++.+|-....-..++. .+-..   ......++  .-+.|.+.|.|.+
T Consensus        24 ~~i~~l~dsq-airav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~---~pp~v~~k--r~khhkgsiyc~~   96 (350)
T KOG0641|consen   24 EAINILEDSQ-AIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAK---QPPSVLCK--RNKHHKGSIYCTA   96 (350)
T ss_pred             EEEEEecchh-heeeEEecCCCc-eEEeccCCceEEEEccccccCccccccccc---CCCeEEee--eccccCccEEEEE
Confidence            4566776654 999999999998 789999999998875432211110 00000   00001111  2456899999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccC--CCcccceEEEcccccceeEEEEecC---CCcEEEEEEe-CCCcEEEEECCCCce
Q 001362          404 WSPDGSLLGVAYSKHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTGSR  477 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~--~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~-~d~~i~vwd~~~~~~  477 (1092)
                      |||+|++||+|+.|.+|++...+.  ......-.++.-|.+.|..++|..+   +.. +|++++ .|..|++-|..+|+.
T Consensus        97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~  175 (350)
T KOG0641|consen   97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG  175 (350)
T ss_pred             ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence            999999999999999999876653  3333344467889999999999754   222 566654 578888899999999


Q ss_pred             eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCceEEEEEccCCCEEEEEecC
Q 001362          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      .+.+.+|.+.|.++--   =++..+++|+.|.+|++||++-..++..+...       ...|.+++..|.|++|+++.. 
T Consensus       176 ~~a~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-  251 (350)
T KOG0641|consen  176 FHALSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-  251 (350)
T ss_pred             ceeecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-
Confidence            9999999999988742   15679999999999999999988877655332       246899999999999999876 


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEeCCCCCCCCc
Q 001362          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENP  626 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~  626 (1092)
                         +....+||++.++.++.+..|.   ..|.++.|+|...++++++.|..|++-|+...    -.+.....|  ...+.
T Consensus       252 ---dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i  323 (350)
T KOG0641|consen  252 ---DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAI  323 (350)
T ss_pred             ---CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceE
Confidence               5568999999999999999988   89999999999999999999999999998642    122223333  34467


Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEECC
Q 001362          627 RICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       627 ~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      .+.|+|..--+++.+.|.++.+|.+.
T Consensus       324 ~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  324 QCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEEecCccceeeeccCcceEEEeccC
Confidence            88999999899999999999999764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=7.9e-28  Score=230.98  Aligned_cols=304  Identities=13%  Similarity=0.211  Sum_probs=237.3

Q ss_pred             CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001362          622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1092)
Q Consensus       622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1092)
                      ...+.+.+|++||.++|+|+.|.+|+|+|++..-....   +.+                                   +
T Consensus       112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~---~~e-----------------------------------m  153 (430)
T KOG0640|consen  112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK---PKE-----------------------------------M  153 (430)
T ss_pred             ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc---hhh-----------------------------------h
Confidence            45688999999999999999999999999873211000   000                                   0


Q ss_pred             eeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCc
Q 001362          702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  781 (1092)
Q Consensus       702 ~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~  781 (1092)
                      ..+              ++.+..++....-.|...|+.+.|.|....|++++.|+++++||+.......        ..+
T Consensus       154 ~~~--------------~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr--------A~K  211 (430)
T KOG0640|consen  154 ISG--------------DTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR--------AFK  211 (430)
T ss_pred             ccC--------------CcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHH--------HHH
Confidence            000              0011111111112388999999999999999999999999999987643200        011


Q ss_pred             cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEec---CCCCCeEEEEEcCCCCC
Q 001362          782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNN  857 (1092)
Q Consensus       782 ~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~  857 (1092)
                      ++                ....+|.++.|+|.|.+|++|.| .++++||+++.++...-.   .|.+.|+++.+++ .++
T Consensus       212 ~~----------------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~  274 (430)
T KOG0640|consen  212 VF----------------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGS  274 (430)
T ss_pred             Hh----------------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-Ccc
Confidence            11                15678999999999999999997 789999999998876543   5788999999999 899


Q ss_pred             EEEEEeCCCcEEEEEcCCceeeEeec-cccC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC--c
Q 001362          858 VIAIGMDDSTILIYNARSSEVISKLE-GHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV--M  933 (1092)
Q Consensus       858 ~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~-~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~--~  933 (1092)
                      +.++|+.||.|+|||--+++|+.++. +|.+ .|.+..|..+|+++.+.|.|..+++|.+.++..     +....|.  .
T Consensus       275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~-----l~~YtGAg~t  349 (430)
T KOG0640|consen  275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM-----LKEYTGAGTT  349 (430)
T ss_pred             EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce-----EEEEecCCcc
Confidence            99999999999999999999998885 4654 789999999999999999999999999999763     3333222  1


Q ss_pred             CCCCCceEEEEecCCCEEEEE--eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001362          934 TLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       934 ~~~~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
                      ....--+...|+....+++.-  ..+.+.-||..++..+..+..+|.+.+..+.-||.+.-++||+.|..+|+|--
T Consensus       350 grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  350 GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             cchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            111123566788888888874  44679999999999999989999999999999999999999999999999964

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=3.4e-26  Score=257.19  Aligned_cols=289  Identities=12%  Similarity=0.123  Sum_probs=224.1

Q ss_pred             CCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CCCEE
Q 001362          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL  411 (1092)
Q Consensus       333 h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l  411 (1092)
                      |-..|.....++|+.. +++++.+..+..|+...|..+.      +........-....+.+|.+.|.+++|+| ++++|
T Consensus        19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L   91 (493)
T PTZ00421         19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL   91 (493)
T ss_pred             ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence            4457788888899763 5677777888899877664332      11111111111234789999999999999 89999


Q ss_pred             EEEeCCCEEEEEEccCCCc----ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001362          412 GVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      |+|+.|++|++||+.++..    ......+.+|...|.+++|+|++.. +|++++.|++|+|||+++++.+..+.+|...
T Consensus        92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~  170 (493)
T PTZ00421         92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ  170 (493)
T ss_pred             EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence            9999999999999986532    1234468899999999999998644 7999999999999999999999999999999


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCc-eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001362          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1092)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1092)
                      |.+++|++  ++.+|++++.||+|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|++||+++..
T Consensus       171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            99999965  6789999999999999999998888787777654 45678899988888887655567889999998754


Q ss_pred             E-EEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001362          567 I-KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       567 ~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      . ......+.  ...+....|+++++.+++++ .|+.|++||+.+++.+....... ...+..++|.|.-
T Consensus       249 ~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk~  315 (493)
T PTZ00421        249 SPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPKW  315 (493)
T ss_pred             CceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEecccc
Confidence            3 33333222  24566678999999999887 59999999999998877665432 2356788888843

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=9.6e-27  Score=261.24  Aligned_cols=284  Identities=17%  Similarity=0.284  Sum_probs=248.5

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      .|...+.|..|. ++  .+++|+.|.+|++||..++..+..                  -+.||.+.|.+++|..-+.+|
T Consensus       206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l  264 (537)
T KOG0274|consen  206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL  264 (537)
T ss_pred             cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence            356789999999 44  489999999999999999987753                  177999999999999889999


Q ss_pred             EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001362          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~  491 (1092)
                      ++|+.|.++++||..+|++..   .+.+|...|.++...+.    .+++|+.|.+|++|++.++.+++.+.+|.++|+++
T Consensus       265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v  337 (537)
T KOG0274|consen  265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV  337 (537)
T ss_pred             EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence            999999999999999998777   78899999999987653    68899999999999999999999999999999999


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-eEEEE
Q 001362          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRT  570 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~  570 (1092)
                      ..+    +.++++|+.||+|++||+.+.+....+.+|...|.++.+.+. ..+++++.    +..|++||+.++ +++.+
T Consensus       338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t  408 (537)
T KOG0274|consen  338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT  408 (537)
T ss_pred             Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence            873    579999999999999999999999999999999999987766 88999887    567999999999 99999


Q ss_pred             EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001362          571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE  650 (1092)
Q Consensus       571 ~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~  650 (1092)
                      +.+|.   ..+..+.  ..++++++++.|++|++||.++++++.++..+ +...|..+++.  ...+++++.+|++++||
T Consensus       409 l~~h~---~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~d  480 (537)
T KOG0274|consen  409 LQGHT---SLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWD  480 (537)
T ss_pred             hcCCc---ccccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence            99988   6665444  45689999999999999999999999999874 23346666655  57899999999999999


Q ss_pred             CCCCceeeec
Q 001362          651 TPESNSVDAA  660 (1092)
Q Consensus       651 ~~~~~~~~~~  660 (1092)
                      ++++.....+
T Consensus       481 l~~~~~~~~l  490 (537)
T KOG0274|consen  481 LRSGTLIRTL  490 (537)
T ss_pred             cccCchhhhh
Confidence            9998777655

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=4.4e-27  Score=241.27  Aligned_cols=308  Identities=18%  Similarity=0.232  Sum_probs=241.7

Q ss_pred             cCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001362          320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1092)
Q Consensus       320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V  399 (1092)
                      ..+|..+-..|.+|+..|.++++.|.|.+ +++|+.|.+|++||...-..... .|             +.+.......|
T Consensus       153 ~~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~f-------------r~l~P~E~h~i  217 (641)
T KOG0772|consen  153 KLIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SF-------------RQLQPCETHQI  217 (641)
T ss_pred             hcCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hh-------------hccCccccccc
Confidence            44677778889999999999999999986 89999999999999986543321 11             12244466789


Q ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEccCCCc---------ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001362          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      .+++||+.|..|++.+.....+|+|-..-+.         +.-...-+||...++|.+|+|+.+. .++|++.||+++||
T Consensus       218 ~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiW  296 (641)
T KOG0772|consen  218 NSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIW  296 (641)
T ss_pred             ceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEE
Confidence            9999999999999999888999999775432         2223345799999999999999988 79999999999999


Q ss_pred             ECCCCc-eeEEEe-----cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCC--ceEEEEEcc
Q 001362          471 DAVTGS-RTYSFE-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGL--GCTRMAYSA  539 (1092)
Q Consensus       471 d~~~~~-~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~--~i~~~~~s~  539 (1092)
                      |+...+ .++.++     +..-++++++|  ++|+.+|++|+.||.|.+|+........   .-..|..  .|++++||+
T Consensus       297 dv~~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~  374 (641)
T KOG0772|consen  297 DVNNTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY  374 (641)
T ss_pred             ecCCchhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc
Confidence            988654 333332     23446788888  5578899999999999999986544322   2334444  899999999


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCCCe-EEEEEeeccccCCceEEEEEcCCCCEEEEEe------CCCcEEEEECCCCce
Q 001362          540 NGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQL  612 (1092)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s------~dg~i~iwd~~~~~~  612 (1092)
                      ||++|++-+.    +..+++||++..+ ++....+.. ...+-+.++|+|+.+.|++|+      ..|++.+||..+...
T Consensus       375 dg~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~  449 (641)
T KOG0772|consen  375 DGNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT  449 (641)
T ss_pred             ccchhhhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence            9999998876    6679999998654 444444433 224567789999999999975      457899999999999


Q ss_pred             EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001362          613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      +..+...  ...|..+.|+|.-+.+++++.||.+++|--.
T Consensus       450 v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  450 VYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             EEEecCC--CceEEEEeecchhhheeeecCCCceEEEECc
Confidence            9998866  3468899999999999999999999997544

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.5e-26  Score=260.48  Aligned_cols=305  Identities=17%  Similarity=0.236  Sum_probs=237.6

Q ss_pred             ccccEEEEEEecCCcEEEEee--cCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001362          733 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  810 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~  810 (1092)
                      +...|.++..+|+|..+++++  .||.+++|+.+.-..          ....++..-...+.+  .  ..|.+.|.|+.|
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~--m--~~h~~sv~CVR~   77 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCT--M--DDHDGSVNCVRF   77 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhee--e--ccccCceeEEEE
Confidence            445689999999999999999  899999998654211          011122211111111  1  149999999999


Q ss_pred             ecCCCEEEEEeC-CeEEEEEcCC------------------ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 001362          811 SKNDAYLFSASG-GVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY  871 (1092)
Q Consensus       811 s~dg~~l~~~sd-g~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw  871 (1092)
                      +|||++||+|+| +.|.||+...                  ++.+..+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus        78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw  156 (942)
T KOG0973|consen   78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW  156 (942)
T ss_pred             CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence            999999999995 6789998762                  346778999999999999999 89999999999999999


Q ss_pred             EcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEE
Q 001362          872 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF  951 (1092)
Q Consensus       872 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l  951 (1092)
                      +..+.+.+.++++|.+.|..+.|.|-|++|||-+.|++|+||++.+....  +.+..+..+.........+.|||||.+|
T Consensus       157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~--k~It~pf~~~~~~T~f~RlSWSPDG~~l  234 (942)
T KOG0973|consen  157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE--KSITKPFEESPLTTFFLRLSWSPDGHHL  234 (942)
T ss_pred             ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee--EeeccchhhCCCcceeeecccCCCcCee
Confidence            99999999999999999999999999999999999999999997763322  2444444444434568899999999999


Q ss_pred             EE--EeC---CcEEEEEcCCceeeeeeccCCCCCEEEEEEec--------CC-----C----EEEEEECCCcEEEEEcCC
Q 001362          952 LL--VHE---THLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC-----R----MVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus       952 a~--~~d---~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg-----~----~l~t~~~Dg~i~vwd~~~ 1009 (1092)
                      ++  +.+   .++.|.+-.+.+.-.. +.||.+++.+++|+|        +|     .    .+|+|+.|++|.||....
T Consensus       235 as~nA~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  235 ASPNAVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             cchhhccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence            98  322   3588888766665554 668999999999998        11     1    578999999999999876


Q ss_pred             CceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001362         1010 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus      1010 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
                      .+.+..+.       ...+.  ..++++|+| ||..|.+.+.||+|.+..+.+.+.
T Consensus       314 ~RPl~vi~-------~lf~~--SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  314 PRPLFVIH-------NLFNK--SIVDMSWSP-DGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             CCchhhhh-------hhhcC--ceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHh
Confidence            66653322       11122  235889999 689999999999999999977553

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.6e-26  Score=237.05  Aligned_cols=282  Identities=15%  Similarity=0.211  Sum_probs=230.3

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001362          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      ..+.|.+++|+|...+=++.+..-.+.+|+......                      ...+.    .....+.++.|..
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~----------------------~k~~s----rFk~~v~s~~fR~   78 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV----------------------RKTFS----RFKDVVYSVDFRS   78 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchhhh----------------------hhhHH----hhccceeEEEeec
Confidence            457899999999777656666666677776433210                      11000    1456789999999


Q ss_pred             CCCEEEEEeC-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEE
Q 001362          813 NDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG  891 (1092)
Q Consensus       813 dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  891 (1092)
                      ||+++|+|++ |.|+|||+++...++.+.+|..++..+.|+|+++..+++|++|+.+++||+.+......+.+|++.|.|
T Consensus        79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~  158 (487)
T KOG0310|consen   79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC  158 (487)
T ss_pred             CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence            9999999985 999999988777788999999999999999999999999999999999999999887789999999999


Q ss_pred             EEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceee
Q 001362          892 LVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL  970 (1092)
Q Consensus       892 l~~spd-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~  970 (1092)
                      .+|+|- +.+++|||.||.|++||+....   .+......+     .+|..+.|-|.|.++|++..+.|++||+.+|...
T Consensus       159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql  230 (487)
T KOG0310|consen  159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL  230 (487)
T ss_pred             eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence            999995 5689999999999999998743   122222222     2699999999999999999999999999966555


Q ss_pred             eeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEe
Q 001362          971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1050 (1092)
Q Consensus       971 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~ 1050 (1092)
                      ......|...|+|+++..|++.|+++|-|+.|++||+.+.+.+..+..    |     ++|  ++++.+| |+..+++|.
T Consensus       231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~----~-----~pv--Lsiavs~-dd~t~viGm  298 (487)
T KOG0310|consen  231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY----P-----GPV--LSIAVSP-DDQTVVIGM  298 (487)
T ss_pred             hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec----c-----cce--eeEEecC-CCceEEEec
Confidence            444555999999999999999999999999999999999999987761    1     123  5677788 568999999


Q ss_pred             CCCcEEEEeC
Q 001362         1051 TNGEVYVIEP 1060 (1092)
Q Consensus      1051 ~dg~v~~w~~ 1060 (1092)
                      .||.+-+-+.
T Consensus       299 snGlv~~rr~  308 (487)
T KOG0310|consen  299 SNGLVSIRRR  308 (487)
T ss_pred             ccceeeeehh
Confidence            9999877644

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.4e-26  Score=245.53  Aligned_cols=279  Identities=18%  Similarity=0.267  Sum_probs=240.7

Q ss_pred             ceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001362          337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  416 (1092)
Q Consensus       337 V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~  416 (1092)
                      ..-+.||..+  ++|+|.. ..|.+|+..+++....                   ..-++..|+++.|+++|.+||+|..
T Consensus       180 ~nlldWss~n--~laValg-~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~  237 (484)
T KOG0305|consen  180 LNLLDWSSAN--VLAVALG-QSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS  237 (484)
T ss_pred             hhHhhcccCC--eEEEEec-ceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence            3457788655  5777653 6899999999986643                   2224789999999999999999999


Q ss_pred             CCEEEEEEccCCCcccceEEEcc-cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE-EecCCcCeEEEeec
Q 001362          417 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPH  494 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~  494 (1092)
                      +|.|.|||..+.+.++   .+.+ |...|.+++|+  +.  .+.+|+.|+.|..+|+...+.... +.+|...|..+.|+
T Consensus       238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws  310 (484)
T KOG0305|consen  238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS  310 (484)
T ss_pred             CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence            9999999999877666   5677 99999999998  34  699999999999999998877655 88999999999995


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee
Q 001362          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG  573 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~  573 (1092)
                        +|+.++++|+.|+.+.|||.........+..|...|..++|+| ....||+|+.  ..|++|++||..+|..+..+..
T Consensus       311 --~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt  386 (484)
T KOG0305|consen  311 --PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT  386 (484)
T ss_pred             --CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence              5778999999999999999999999999999999999999999 5567777765  5588999999999999888765


Q ss_pred             ccccCCceEEEEEcCCCCEEEE--EeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001362          574 LQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       574 ~~~~~~~v~~~~~~p~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      .    ..|..+.|++..+.+++  |..++.|.||+..+.+.+..+.+|.  ..|..++++|||..+++|+.|.++++|++
T Consensus       387 g----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  387 G----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             C----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccc
Confidence            3    58999999999887877  5577899999999999999888774  46999999999999999999999999998


Q ss_pred             CCC
Q 001362          652 PES  654 (1092)
Q Consensus       652 ~~~  654 (1092)
                      -+.
T Consensus       461 f~~  463 (484)
T KOG0305|consen  461 FDE  463 (484)
T ss_pred             cCC
Confidence            764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=6e-25  Score=214.08  Aligned_cols=273  Identities=16%  Similarity=0.187  Sum_probs=229.3

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC--CCcEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV  469 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~v  469 (1092)
                      +..-.+.|.++.|+++|.+|++++.|.+++|||..+|++++   ++..+...|..++|.....  .++.++.  |.+|+.
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry   84 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY   84 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence            44467899999999999999999999999999999998776   5666777899999988887  4565655  889999


Q ss_pred             EECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001362          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      -++.+.+.++-|.||...|++++.+|.+  ..+++++.|++|++||++..++...+.....++  ++|.|.|-.+|++..
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~  160 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG  160 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence            9999999999999999999999997765  689999999999999999888877776665555  789999999998864


Q ss_pred             CCCCceeEEEEeCCCC--eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCC-c
Q 001362          550 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN-P  626 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~  626 (1092)
                          ...|.+||+++-  .+..++.-..........+.|+|+|++++.++..+.+++.|.-+|..+.++..+.....+ .
T Consensus       161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~  236 (311)
T KOG1446|consen  161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL  236 (311)
T ss_pred             ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence                336999999853  334444433222367889999999999999999999999999999999988876543322 4


Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEECCCCceeeeccc-ccCceeeeeecCCCc
Q 001362          627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPIST  677 (1092)
Q Consensus       627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~  677 (1092)
                      ..+|+||++++++|+.||+|.+|+++++..+..+++ +...+.++.|+|...
T Consensus       237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~  288 (311)
T KOG1446|consen  237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYA  288 (311)
T ss_pred             eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCcee
Confidence            788999999999999999999999999999999988 578888888876433

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=3.9e-26  Score=226.25  Aligned_cols=280  Identities=16%  Similarity=0.196  Sum_probs=234.0

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCC-cEEEEEEeCCCcEEEEEC
Q 001362          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDA  472 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~l~s~~~d~~i~vwd~  472 (1092)
                      -|.+.|.++...  ++.|++|+.||.+++||.....    ...+.||.++|.+++|.-... .-.+++++.|.++++|-+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~----~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~  176 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS----IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW  176 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCCce----EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence            388899999888  8899999999999999998642    236789999999888754322 115999999999999998


Q ss_pred             CCCce----eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC-------------------------CCCceE
Q 001362          473 VTGSR----TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------------------------SLGARV  523 (1092)
Q Consensus       473 ~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-------------------------~~~~~~  523 (1092)
                      +.++.    ++...||...|.++..  .+++..+++|+.|.+|.+|+..                         ...+..
T Consensus       177 ~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v  254 (423)
T KOG0313|consen  177 NVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV  254 (423)
T ss_pred             cCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence            87754    3444699999999987  4577899999999999999831                         122445


Q ss_pred             EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001362          524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  603 (1092)
Q Consensus       524 ~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~  603 (1092)
                      .+.+|..+|.++.|++ ...+++++.    +.+|+.||+.++..+..+.+.    ..+.++..+|..+.|++|+.|..++
T Consensus       255 tl~GHt~~Vs~V~w~d-~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~----ksl~~i~~~~~~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSD-ATVIYSVSW----DHTIKVWDLETGGLKSTLTTN----KSLNCISYSPLSKLLASGSSDRHIR  325 (423)
T ss_pred             EecccccceeeEEEcC-CCceEeecc----cceEEEEEeecccceeeeecC----cceeEeecccccceeeecCCCCcee
Confidence            6788999999999988 667778876    778999999999999888874    4899999999999999999999999


Q ss_pred             EEECCCCce---EEEEeCCCCCCCCceEEEcc-CCCEEEEEeCCCeEEEEECCCCc-eeeecccccCceeeeeecCCCcc
Q 001362          604 IWDMNKVQL---LTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLSVNPISTV  678 (1092)
Q Consensus       604 iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~  678 (1092)
                      +||.+++.-   ..++.+|  ...|.++.|+| +..+|++++.|+++++||+++.. ++..+.+|.+.|.++.|+     
T Consensus       326 l~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-----  398 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-----  398 (423)
T ss_pred             ecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-----
Confidence            999987642   3444444  55799999999 55678999999999999999886 899999999999999997     


Q ss_pred             ccccccCCceeecCCCCCCCccceeeccccccceecc
Q 001362          679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP  715 (1092)
Q Consensus       679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~  715 (1092)
                                        ++.++++|+.|.+++++..
T Consensus       399 ------------------~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  399 ------------------EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             ------------------CCceEEeccCcceEEEecc
Confidence                              6788999999999999874

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=8.8e-26  Score=217.07  Aligned_cols=276  Identities=18%  Similarity=0.236  Sum_probs=219.8

Q ss_pred             CCCCceEEeecCCCceEEEEEcCCCcEEEEecCCC-CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001362          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       333 h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      ..+.|.+++|||....+++.||.|++||+|+++.. ....                  .....|.++|.+++|+.||..+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV   87 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV   87 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence            36799999999966668889999999999999873 3332                  1255699999999999999999


Q ss_pred             EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001362          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~  491 (1092)
                      ++|+.|+.+++||+.+++..    .+..|.++|..+.|-+...+..|+|||.|++|+.||.+...++.++. ..+.++++
T Consensus        88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~  162 (347)
T KOG0647|consen   88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA  162 (347)
T ss_pred             EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence            99999999999999998533    46789999999999887766689999999999999999999998886 55667777


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEe-c-CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC--eE
Q 001362          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-D-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AI  567 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~~  567 (1092)
                      ..    -..+++.+..+..|.+|+++........ . .-.-.+++++...|....+.|+.    +|.+.+..+..+  +.
T Consensus       163 Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~  234 (347)
T KOG0647|consen  163 DV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD  234 (347)
T ss_pred             hc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence            54    2258999999999999999765543322 1 12336889999888888788876    445666655554  55


Q ss_pred             EEEEeecccc------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001362          568 KRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1092)
Q Consensus       568 ~~~~~~~~~~------~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  641 (1092)
                      --+|+.|...      ...|++++|+|....|++++.||++.+||-.....+.+.+.+  ...|.+++|+.+|.++|-+.
T Consensus       235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEEe
Confidence            5567777621      235778999999999999999999999998887777766544  34699999999999888664

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=5.6e-25  Score=247.68  Aligned_cols=237  Identities=10%  Similarity=0.095  Sum_probs=185.4

Q ss_pred             ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCc-c----cceEEEcccccceeEEEEecCCCcEEEEEEeCCC
Q 001362          392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  465 (1092)
Q Consensus       392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~-~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~  465 (1092)
                      +.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. .    .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus        70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg  148 (568)
T PTZ00420         70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS  148 (568)
T ss_pred             EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence            7899999999999996 89999999999999999986432 1    123357799999999999999874 567999999


Q ss_pred             cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE-----EEEccC
Q 001362          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-----MAYSAN  540 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~-----~~~s~d  540 (1092)
                      +|+|||+.+++.+..+. |...|.+++|++  +|.+|++++.|+.|++||++++.....+..|.+.+..     ..|+++
T Consensus       149 tIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d  225 (568)
T PTZ00420        149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD  225 (568)
T ss_pred             eEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence            99999999999888776 667899999965  6789999999999999999999888888888765432     335689


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001362          541 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       541 g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  619 (1092)
                      +.++++++.++..++.|++||+++ ++.+..+..+. +.+.+......+++.++++|+.|++|++|++..+. +..+...
T Consensus       226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~  303 (568)
T PTZ00420        226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY  303 (568)
T ss_pred             CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc
Confidence            999999887655556899999985 55555543332 12333333345568888899999999999998774 3444433


Q ss_pred             CCCCCCceEEEccCC
Q 001362          620 GGLPENPRICFNKNG  634 (1092)
Q Consensus       620 ~~~~~v~~v~~s~~~  634 (1092)
                      ....++.+++|.|..
T Consensus       304 ~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        304 KSCSPFRSFGFLPKQ  318 (568)
T ss_pred             ccCCCccceEEcccc
Confidence            344567889999964

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.7e-26  Score=251.03  Aligned_cols=277  Identities=14%  Similarity=0.195  Sum_probs=212.0

Q ss_pred             cccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCc------C------------------cCc-ccccc---------
Q 001362          732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL------T------------------LST-EATTK---------  777 (1092)
Q Consensus       732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~------~------------------~~~-~~~~~---------  777 (1092)
                      .|.+.|.++.||+||++|++++.||.|+||.+.....      .                  ... .....         
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            4899999999999999999999999999999876111      0                  000 00000         


Q ss_pred             cCCccccCCCCCceeee-cCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCC
Q 001362          778 VPPRLYQPRHGPQFMVN-DTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN  856 (1092)
Q Consensus       778 ~~~~~w~~~~g~~~~~~-~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~  856 (1092)
                      ..-.+....... +... -....+|...|..+.||.++-+|-+.-|.+|++|++...+++..|. |.+.|+|++|+|-|.
T Consensus       345 s~~~~~p~~~f~-f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD  422 (712)
T KOG0283|consen  345 SPCVLLPLKAFV-FSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD  422 (712)
T ss_pred             CccccCCCcccc-ccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence            000011110000 0000 0012369999999999988754444449999999999999999998 999999999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001362          857 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  936 (1092)
Q Consensus       857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  936 (1092)
                      +++++|+-||.|+||++...+++.-..-+ .-|++++|+|||+..+.|+.+|.+++|+....+......+....+.....
T Consensus       423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~  501 (712)
T KOG0283|consen  423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG  501 (712)
T ss_pred             CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence            99999999999999999987766555544 77999999999999999999999999999987766655555554443333


Q ss_pred             CCceEEEEecCCC--EEEEEeCCcEEEEEcCCceeeeeeccCC-CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001362          937 PSETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       937 ~~v~~l~~s~dg~--~la~~~d~~i~lwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
                      ..|+.+.|.|...  .|+++.|..|+|||..+...+..+...| ...-....|+.||++|++++.|..|++|++....
T Consensus       502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            4799999987654  7888999999999998888777754334 3445678899999999999999999999985443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1e-25  Score=217.57  Aligned_cols=313  Identities=13%  Similarity=0.155  Sum_probs=235.2

Q ss_pred             eeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCcccccc
Q 001362          657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK  736 (1092)
Q Consensus       657 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~  736 (1092)
                      +..+++|...|++++|+                      .||+.+++++.|++|++|++..-....-+.+...  ...+.
T Consensus        79 ~~~LKgH~~~vt~~~Fs----------------------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dh  134 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFS----------------------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDH  134 (420)
T ss_pred             hhhhhccCCceeeeEEc----------------------CCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCC
Confidence            34678999999999996                      7899999999999999999764322222222111  13346


Q ss_pred             EEEEEEecCCcEEEEeec-CCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001362          737 ISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1092)
Q Consensus       737 i~~l~~s~~g~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~  815 (1092)
                      .+.++|+||-+.++.... ...+++|.+.....   |....  ...-||-..        ++ .-|...+..+-...+++
T Consensus       135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~--~~v~~D~~~--------f~-~kh~v~~i~iGiA~~~k  200 (420)
T KOG2096|consen  135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSH--HFVHIDNLE--------FE-RKHQVDIINIGIAGNAK  200 (420)
T ss_pred             ceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCc--ccccccccc--------cc-hhcccceEEEeecCCce
Confidence            788999999887766554 46899998765432   21110  111122000        10 12667778888889999


Q ss_pred             EEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC---c-----eeeEeecccc
Q 001362          816 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---S-----EVISKLEGHS  886 (1092)
Q Consensus       816 ~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h~  886 (1092)
                      ++++++ |..|.+|++. |+.+..+......-+..+.|| +|+++|+++.--.|++|.+--   |     ..+..|+||.
T Consensus       201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~  278 (420)
T KOG2096|consen  201 YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ  278 (420)
T ss_pred             EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence            999998 6789999998 888888887777778899999 999999999999999998732   2     2356789999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee--eeeeeecCCCC-cCCCCCceEEEEecCCCEEEEEeCCcEEEEE
Q 001362          887 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--TCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLLVHETHLAIYE  963 (1092)
Q Consensus       887 ~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~--~~~~~~~~~~~-~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd  963 (1092)
                      ..|..++||++...++|+|.||+++|||.+-....  ..+.++..... ....+....++++|.|+.||++....+++|.
T Consensus       279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~  358 (420)
T KOG2096|consen  279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFA  358 (420)
T ss_pred             hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence            99999999999999999999999999998743211  12223222111 1111244589999999999999999999999


Q ss_pred             cCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001362          964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
                      .++|+....+...|...|+++.|++||++++|+| |..+++..-..|
T Consensus       359 se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg  404 (420)
T KOG2096|consen  359 SEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG  404 (420)
T ss_pred             cccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence            9999988888888999999999999999999996 788998764333

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.9e-26  Score=220.66  Aligned_cols=297  Identities=14%  Similarity=0.185  Sum_probs=243.5

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      .+.+.|.||++.||.|+...... ++.+++.|.+.+||.+++|.++..                   +.||.+.|++++|
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikf  198 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKF  198 (481)
T ss_pred             eehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEe
Confidence            45677889999999999988776 899999999999999999999986                   7899999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEcc------C--------CC----------------------cc-cceEEEcccccceeEE
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYH------G--------GS----------------------DA-RQQLEIDAHVGNVNDL  447 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~------~--------~~----------------------~~-~~~~~~~~h~~~v~~~  447 (1092)
                      ++.+.++++++.|++.+||...      .        ++                      .+ .+...+.+|.+.|.++
T Consensus       199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~  278 (481)
T KOG0300|consen  199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC  278 (481)
T ss_pred             ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence            9999999999999999999821      1        00                      01 1244688999999999


Q ss_pred             EEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEec
Q 001362          448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYD  526 (1092)
Q Consensus       448 ~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~  526 (1092)
                      .|...|+  .+++++.|.+..+||+++|+.+..+.||....+.++-+|  ..+++++.+.|.+.++||++..- .+..+.
T Consensus       279 dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFReaI~sV~VFQ  354 (481)
T KOG0300|consen  279 DWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREAIQSVAVFQ  354 (481)
T ss_pred             hhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchhhcceeeeec
Confidence            9999999  699999999999999999999999999999999998866  55799999999999999998543 345789


Q ss_pred             CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001362          527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW  605 (1092)
Q Consensus       527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iw  605 (1092)
                      +|...|+++.|..|.+ +++++.    +.+|.+||+++.. .+.++...    .+++.++.+..++.++.--.+..|++|
T Consensus       355 GHtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtd----S~~NRvavs~g~~iIAiPhDNRqvRlf  425 (481)
T KOG0300|consen  355 GHTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTD----SPANRVAVSKGHPIIAIPHDNRQVRLF  425 (481)
T ss_pred             ccccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecC----CccceeEeecCCceEEeccCCceEEEE
Confidence            9999999999988765 556654    7789999998754 45555543    588899999888888888888999999


Q ss_pred             ECCCCceEEEE--eCCCCCCCCceEEEccCC--CEEEEEeCCCeEEEEECCCC
Q 001362          606 DMNKVQLLTTI--DAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPES  654 (1092)
Q Consensus       606 d~~~~~~~~~~--~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      |+...++....  ...++...|.|++|..+.  .-|++++.|..+.-|.+...
T Consensus       426 DlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  426 DLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            99765443222  223444568899998643  35788889999999987654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=2.3e-25  Score=209.68  Aligned_cols=253  Identities=16%  Similarity=0.246  Sum_probs=212.3

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|...|.+++|+.+|.+||+|+.|+++.+|+++..+.... ....+|.+.|..++|.|.... .+++++.|++|++||
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-LVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD   93 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-hcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence            567999999999999999999999999999999998754433 256789999999999998776 789999999999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      +.++++........+.++ ++|  +++|.+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++...   
T Consensus        94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~---  166 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN---  166 (313)
T ss_pred             eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence            999999998875555554 455  55778999999999999999987766554332 23566788887777766553   


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001362          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                       |.|.|.|.....-+.+..++.|.   ....++.|+|+|+++++|+.|..+.+||++.--+...+....  -+|..+.||
T Consensus       167 -GlG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld--wpVRTlSFS  240 (313)
T KOG1407|consen  167 -GLGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD--WPVRTLSFS  240 (313)
T ss_pred             -CCceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc--CceEEEEec
Confidence             36789999888999999999988   888999999999999999999999999999888887776543  369999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCceeee
Q 001362          632 KNGTLLAVIANENRIKILETPESNSVDA  659 (1092)
Q Consensus       632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~  659 (1092)
                      .||++||++++|..|-|=++++|..+..
T Consensus       241 ~dg~~lASaSEDh~IDIA~vetGd~~~e  268 (313)
T KOG1407|consen  241 HDGRMLASASEDHFIDIAEVETGDRVWE  268 (313)
T ss_pred             cCcceeeccCccceEEeEecccCCeEEE
Confidence            9999999999999999988887754443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=7.9e-26  Score=229.94  Aligned_cols=293  Identities=14%  Similarity=0.191  Sum_probs=235.2

Q ss_pred             eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeee----cccccceeeEeeecCCCCcEEEE
Q 001362          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWD----IGACSMLFKTALVRDPGVSVNRV  402 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d----~~~~~~~~~~~~l~~h~~~V~~l  402 (1092)
                      .+.+..|.-.|.||+++||++ +..+++.+++|.=|++.+|+....    +|.    ++....+++..- ++|...|.++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~  208 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL  208 (479)
T ss_pred             ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence            366778888999999999998 589999999999999999985521    111    111223333322 4899999999


Q ss_pred             EECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001362          403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      +.||||+|||+|+.|..|.||+..+.+.++   .+.+|.+.|.+++|-....  -+++++.|.+|++|+++....+.++.
T Consensus       209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly  283 (479)
T KOG0299|consen  209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY  283 (479)
T ss_pred             EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence            999999999999999999999999988776   6889999999999987666  68999999999999999999999999


Q ss_pred             cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001362          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      +|...|.++....  -+..+-+|+.|+++++|++ .......+.++.+.+.+++|-.+. .+++|+.    ++.|.+|++
T Consensus       284 GHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLWs~  355 (479)
T KOG0299|consen  284 GHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALWSL  355 (479)
T ss_pred             CCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEeee
Confidence            9999999987643  3345555669999999999 455667778888899999997654 5667765    667999999


Q ss_pred             CCCeEEEEEeec-cccC--------CceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEeCCCCCCCCceEE
Q 001362          563 SEGAIKRTYQGL-QLQH--------NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRIC  629 (1092)
Q Consensus       563 ~~~~~~~~~~~~-~~~~--------~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~  629 (1092)
                      ...+++.+.... ....        ..|++++..|..+.+++|+.+|.|++|-+.++    .++..+...   ..|++++
T Consensus       356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~  432 (479)
T KOG0299|consen  356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLA  432 (479)
T ss_pred             cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEE
Confidence            998887665432 1111        27899999999999999999999999999887    344444433   4589999


Q ss_pred             EccCCCEEEEEe
Q 001362          630 FNKNGTLLAVIA  641 (1092)
Q Consensus       630 ~s~~~~~l~~~~  641 (1092)
                      |+++|+.+++|.
T Consensus       433 f~~sgk~ivagi  444 (479)
T KOG0299|consen  433 FSNSGKRIVAGI  444 (479)
T ss_pred             EccCCCEEEEec
Confidence            999999776663

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=5.4e-26  Score=212.93  Aligned_cols=285  Identities=17%  Similarity=0.247  Sum_probs=226.5

Q ss_pred             ceEEeecCC--CceEEEEEc-----CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC-C
Q 001362          337 PMSMDFHPV--QHTLLLVGT-----NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G  408 (1092)
Q Consensus       337 V~~v~~spd--g~~llasg~-----~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd-g  408 (1092)
                      =.++.|||-  ++..+|+++     ..|++.|-++..+..+..  +.-+|               -.+.+..++||++ .
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~d---------------~~D~LfdV~Wse~~e   73 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSYD---------------TEDGLFDVAWSENHE   73 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEeee---------------cccceeEeeecCCCc
Confidence            357889984  442333332     247899999875544432  11111               4578999999994 5


Q ss_pred             CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe
Q 001362          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  488 (1092)
                      ..+++++.||+++|||+...  -.++..++.|...|.++.|++-.++ .+++++.|++|++|+...++.++++.||...|
T Consensus        74 ~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I  150 (311)
T KOG0277|consen   74 NQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI  150 (311)
T ss_pred             ceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence            67888999999999996533  2455578899999999999998776 67778999999999999999999999999999


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCC-EEEEEecCCCCceeEEEEeCCCC-e
Q 001362          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESEG-A  566 (1092)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~~-~  566 (1092)
                      ....|+|. ...++++++.||++++||++.......+..|...+.++.|+.-.. .+++++.    ++.|+.||+++- .
T Consensus       151 y~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~  225 (311)
T KOG0277|consen  151 YQAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRT  225 (311)
T ss_pred             EEEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhccc
Confidence            99999987 457999999999999999999888888999999999999998554 5555554    778999999864 4


Q ss_pred             EEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCCCCceEEEcc-CCCEEEEEeCC
Q 001362          567 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK-NGTLLAVIANE  643 (1092)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~d  643 (1092)
                      .+..+.+|.   -.|..+.|+|.. ..|++++.|-++||||...+ ..+.+...|  ...+..+.|++ ++.++|..+.|
T Consensus       226 pl~eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWD  300 (311)
T KOG0277|consen  226 PLFELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWD  300 (311)
T ss_pred             cceeecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccc
Confidence            566777777   899999999975 56788999999999999854 344455444  34577888887 67899999999


Q ss_pred             CeEEEEEC
Q 001362          644 NRIKILET  651 (1092)
Q Consensus       644 g~i~iw~~  651 (1092)
                      +.++||+.
T Consensus       301 e~l~Vw~p  308 (311)
T KOG0277|consen  301 ELLYVWNP  308 (311)
T ss_pred             cceeeecc
Confidence            99999984

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-24  Score=199.38  Aligned_cols=308  Identities=13%  Similarity=0.131  Sum_probs=226.5

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001362          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      ....|.+++|.|.|...++++...++++-.++.-.....+...+..++.+.           -...+.|.+.|.|.+|||
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~-----------~kr~khhkgsiyc~~ws~   99 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVL-----------CKRNKHHKGSIYCTAWSP   99 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEE-----------eeeccccCccEEEEEecC
Confidence            567899999999999999999999999877654322112222111111111           011224899999999999


Q ss_pred             CCCEEEEEe-CCeEEEEEcCCcee-----eEEecCCCCCeEEEEEcCC---CCCEEEEEe-CCCcEEEEEcCCceeeEee
Q 001362          813 NDAYLFSAS-GGVISLYIVMTFKT-----ILTIMPPSPTATSLAFNPH---DNNVIAIGM-DDSTILIYNARSSEVISKL  882 (1092)
Q Consensus       813 dg~~l~~~s-dg~i~iwd~~~~~~-----~~~~~~~~~~i~~l~~s~~---d~~~lasg~-~dg~v~iwd~~~~~~~~~l  882 (1092)
                      +|+++++|+ |.+|++..++...+     -..+.-|.+.|..++|-.+   .+.+|++++ .|..|++-|...|+....+
T Consensus       100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~  179 (350)
T KOG0641|consen  100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL  179 (350)
T ss_pred             ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence            999999999 68888876653322     2346678999999999642   466788765 4668888899999999999


Q ss_pred             ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEE
Q 001362          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAI  961 (1092)
Q Consensus       883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~l  961 (1092)
                      .||++.|.++ ++-+|-++++|+.|.+|++||+.-.......- ....+.--.+..|.+++..|.|++|+++ .|....+
T Consensus       180 sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~-~~~~~~glessavaav~vdpsgrll~sg~~dssc~l  257 (350)
T KOG0641|consen  180 SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD-NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML  257 (350)
T ss_pred             cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeecc-CcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence            9999999886 34578999999999999999998644222110 1111111112479999999999999996 6788999


Q ss_pred             EEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCC
Q 001362          962 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL 1041 (1092)
Q Consensus       962 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~ 1041 (1092)
                      ||+..+..++.+ -.|+..|.++.|||...|+++++.|..|++=|+... +...+.....-.   |  .-..+.+.|+|+
T Consensus       258 ydirg~r~iq~f-~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~vv~e---h--kdk~i~~rwh~~  330 (350)
T KOG0641|consen  258 YDIRGGRMIQRF-HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIMVVAE---H--KDKAIQCRWHPQ  330 (350)
T ss_pred             EEeeCCceeeee-CCCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceEEEEe---c--cCceEEEEecCc
Confidence            999999999884 479999999999999999999999999999999754 222222111111   1  123456889997


Q ss_pred             CCCEEEEEeCCCcEEEEeCC
Q 001362         1042 KPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1042 ~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      | --|++.+.|.++.+|-++
T Consensus       331 d-~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  331 D-FSFISSSADKTATLWALN  349 (350)
T ss_pred             c-ceeeeccCcceEEEeccC
Confidence            4 678899999999999874

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=7.7e-26  Score=232.20  Aligned_cols=297  Identities=17%  Similarity=0.236  Sum_probs=224.4

Q ss_pred             cccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001362          732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  811 (1092)
Q Consensus       732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s  811 (1092)
                      +|...|.++++.|.|.++++|+-|..+++||++.-..+          .+-           +..-.+.....|.++.||
T Consensus       165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------~~~-----------fr~l~P~E~h~i~sl~ys  223 (641)
T KOG0772|consen  165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------MRS-----------FRQLQPCETHQINSLQYS  223 (641)
T ss_pred             CCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------chh-----------hhccCcccccccceeeec
Confidence            47888999999999999999999999999998753210          000           001111356688999999


Q ss_pred             cCCCEEEEEeC-CeEEEEEcCCceeeE------------EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce-
Q 001362          812 KNDAYLFSASG-GVISLYIVMTFKTIL------------TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-  877 (1092)
Q Consensus       812 ~dg~~l~~~sd-g~i~iwd~~~~~~~~------------~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-  877 (1092)
                      +.|..+++.+. ...+|+|-...+...            .-++|...++|.+|+|.....+++++.||+++|||+...+ 
T Consensus       224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~  303 (641)
T KOG0772|consen  224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS  303 (641)
T ss_pred             CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence            99988888874 779999976544332            2357888999999999888899999999999999998753 


Q ss_pred             eeEeec-----cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEE
Q 001362          878 VISKLE-----GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL  952 (1092)
Q Consensus       878 ~~~~l~-----~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la  952 (1092)
                      .+..++     +-.-+++.++|++||+++|.|..||.|.+|+..+.....  .+.....|.. ...|++++||+||++|+
T Consensus       304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~Ll  380 (641)
T KOG0772|consen  304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLL  380 (641)
T ss_pred             heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhh
Confidence            233332     344578999999999999999999999999986533222  2222223321 23699999999999999


Q ss_pred             E-EeCCcEEEEEcCCcee-eeeeccC--CCCCEEEEEEecCCCEEEEEEC------CCcEEEEEcCCCceEEeecccccc
Q 001362          953 L-VHETHLAIYEAEELTC-LKQWFPI--SSVPISQATFSCDCRMVFTSFV------DGTLSIHEASNLEVQCRILSTAYL 1022 (1092)
Q Consensus       953 ~-~~d~~i~lwd~~~~~~-~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~------Dg~i~vwd~~~~~~~~~~~~~~~~ 1022 (1092)
                      + +.|+++++||+.+.+. +.. ..+  ...+-+.++||||.++|+||+.      .|.+.+||..+...+.++...   
T Consensus       381 SRg~D~tLKvWDLrq~kkpL~~-~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---  456 (641)
T KOG0772|consen  381 SRGFDDTLKVWDLRQFKKPLNV-RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---  456 (641)
T ss_pred             hccCCCceeeeeccccccchhh-hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC---
Confidence            9 9999999999986553 333 222  2456678999999999999875      377999999999998887622   


Q ss_pred             CCCCccCcccceEEEECCCCCCEEEEEeCCCcEEE-EeCCCCC
Q 001362         1023 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV-IEPNEPG 1064 (1092)
Q Consensus      1023 ~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~-w~~~~~~ 1064 (1092)
                             ......+.||| .-+++.+|+.||++++ ||...+.
T Consensus       457 -------~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S~  491 (641)
T KOG0772|consen  457 -------TASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNESI  491 (641)
T ss_pred             -------CceEEEEeecc-hhhheeeecCCCceEEEECccccc
Confidence                   12345688999 4678999999999986 5665544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=1.7e-25  Score=238.39  Aligned_cols=284  Identities=18%  Similarity=0.296  Sum_probs=241.6

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEE-EE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VV  403 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~-l~  403 (1092)
                      .+.+.|.||+..|..+++.++.  .++++|.||++++|+-..++.+.+.                 .+.+|.+-|.+ ++
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~-----------------~~~~~~g~i~~~i~   65 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETH-----------------AFEGPKGFIANSIC   65 (745)
T ss_pred             eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccce-----------------ecccCcceeeccce
Confidence            4568899999999999998887  4789999999999998776665432                 25568888877 88


Q ss_pred             ECC-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001362          404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      +-+ |+-.|++|+.|.+|.+|.+.+...+.   .+.+|...|.+++...++.   ++|||.|.++++|-  .+++...+.
T Consensus        66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~  137 (745)
T KOG0301|consen   66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQ  137 (745)
T ss_pred             eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccC
Confidence            886 66679999999999999999987766   7899999999999887775   89999999999995  567778899


Q ss_pred             cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001362          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      +|...|.+++..+..   .++||+.|++|++|.  .++...++.+|..-|+.+++-+++.+ ++|+.    ++.|+.|++
T Consensus       138 gH~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~f-lScsN----Dg~Ir~w~~  207 (745)
T KOG0301|consen  138 GHTASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHF-LSCSN----DGSIRLWDL  207 (745)
T ss_pred             CcchheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCe-EeecC----CceEEEEec
Confidence            999999999886543   899999999999994  47778889999999999999887664 46654    778999998


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001362          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                       +|+.+..+.+|.   .-++++....++..++++++|++++||+..  .+.+.+..++.  .+.++.+-++|. +++|+.
T Consensus       208 -~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~S  278 (745)
T KOG0301|consen  208 -DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGS  278 (745)
T ss_pred             -cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEecc
Confidence             899999999998   899999988888999999999999999976  77788876643  478888888886 778889


Q ss_pred             CCeEEEEECCCC
Q 001362          643 ENRIKILETPES  654 (1092)
Q Consensus       643 dg~i~iw~~~~~  654 (1092)
                      ||.|+||.....
T Consensus       279 DG~VrVfT~~k~  290 (745)
T KOG0301|consen  279 DGRVRVFTVDKD  290 (745)
T ss_pred             CceEEEEEeccc
Confidence            999999987744

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=1.2e-26  Score=232.24  Aligned_cols=285  Identities=18%  Similarity=0.248  Sum_probs=240.2

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|..++|+++.|.++++  .+++++.|+.+++|+
T Consensus       171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN  247 (459)
T ss_pred             hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence            56799999999999999999999999999999998776 233346778889999999999999  789999999999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      +...+...++.||.+.|+++.|....  ..+++|+.|.+|+.||+....+..+.. ....+..++.+  ...++++..  
T Consensus       248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~--  320 (459)
T KOG0288|consen  248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF--  320 (459)
T ss_pred             ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence            99999999999999999999986543  349999999999999999866655433 22334444444  445666665  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC--CCCCceEE
Q 001362          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC  629 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~  629 (1092)
                        +..|+.||.++..+......+    +.|+++..++++..+++++.|.++.+.|+.+.+....+...+.  ....+.+.
T Consensus       321 --DkkvRfwD~Rs~~~~~sv~~g----g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv  394 (459)
T KOG0288|consen  321 --DKKVRFWDIRSADKTRSVPLG----GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV  394 (459)
T ss_pred             --ccceEEEeccCCceeeEeecC----cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence              556999999999998888874    4899999999999999999999999999999998888865432  23478899


Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCCceeeecccccCc--eeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001362          630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       630 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      |||++.|+++|+.||.|+||++.+++....+......  |++++|+                      |.|..+++++.+
T Consensus       395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~----------------------~sG~~Llsadk~  452 (459)
T KOG0288|consen  395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN----------------------PSGSGLLSADKQ  452 (459)
T ss_pred             ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc----------------------CCCchhhcccCC
Confidence            9999999999999999999999999888877765554  9999997                      567788899998


Q ss_pred             cccceec
Q 001362          708 NKSEVEK  714 (1092)
Q Consensus       708 ~~i~lw~  714 (1092)
                      +.+.+|.
T Consensus       453 ~~v~lW~  459 (459)
T KOG0288|consen  453 KAVTLWT  459 (459)
T ss_pred             cceEecC
Confidence            8888883

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.4e-26  Score=241.63  Aligned_cols=351  Identities=17%  Similarity=0.216  Sum_probs=262.6

Q ss_pred             cCCCCce---EEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001362          332 EGSSSPM---SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       332 ~h~~~V~---~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      .|...|.   .+..++.+.++|.+|+.||.|++|++..-.....            .+ ....+..|.+.|+.++...+|
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~   85 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNG   85 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCC
Confidence            3444555   5556655545799999999999999875432210            00 011266799999999999999


Q ss_pred             CEEEEEeCCCEEEEEEccCCC--cccceEEEcccccceeEEEE-ecCCCcEEEEEEeCCCcEEEEECCCC--ceeEE---
Q 001362          409 SLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTG--SRTYS---  480 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~-s~d~~~l~l~s~~~d~~i~vwd~~~~--~~~~~---  480 (1092)
                      +.|+++|.|-+|++|+...+.  +..   ++..|...|.|+++ .++..  .++|||-|+.|.+||+.+|  +.+.+   
T Consensus        86 ~tlIS~SsDtTVK~W~~~~~~~~c~s---tir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~  160 (735)
T KOG0308|consen   86 KTLISASSDTTVKVWNAHKDNTFCMS---TIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNN  160 (735)
T ss_pred             CceEEecCCceEEEeecccCcchhHh---hhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccc
Confidence            999999999999999998873  333   67889999999999 66666  8999999999999999988  33332   


Q ss_pred             -----Ee-cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001362          481 -----FE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       481 -----~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                           +. |+..+|++++.+  ++|..+++|+..+.+++||.++...+..+.+|...|..+..++||+++++++.    +
T Consensus       161 ~t~~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----D  234 (735)
T KOG0308|consen  161 VTVNSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----D  234 (735)
T ss_pred             cccccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----C
Confidence                 23 788899999884  45679999999999999999999999999999999999999999999999986    7


Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001362          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      ++|++||+...+++.++..|.   ..|+++..+|+-..+++|+.||.|+.=|+.+......+-...  .+|..+..+...
T Consensus       235 gtIrlWdLgqQrCl~T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~  309 (735)
T KOG0308|consen  235 GTIRLWDLGQQRCLATYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHD  309 (735)
T ss_pred             ceEEeeeccccceeeeEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--Cchhhhhhcccc
Confidence            789999999999999999988   779999999999999999999999999998853333222221  246777777655


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeeccc-------ccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001362          635 TLLAVIANENRIKILETPESNSVDAAGV-------LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      +-+-+++.|+.|+-|.....-.+.....       ....+.+....|+...-+..+-....     .-.|.+.+++-...
T Consensus       310 ~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~-----mL~dkRhVlTkDa~  384 (735)
T KOG0308|consen  310 NSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHA-----MLNDKRHVLTKDAK  384 (735)
T ss_pred             CCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhh-----hhcCcceEeeecCC
Confidence            5668888999999998764322211111       11111111111111111100000011     14678899999999


Q ss_pred             cccceeccc
Q 001362          708 NKSEVEKPL  716 (1092)
Q Consensus       708 ~~i~lw~~~  716 (1092)
                      |.+.+||+-
T Consensus       385 gnv~lwDIl  393 (735)
T KOG0308|consen  385 GNVALWDIL  393 (735)
T ss_pred             CCEEEEEee
Confidence            999999965

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.8e-23  Score=230.50  Aligned_cols=567  Identities=12%  Similarity=0.118  Sum_probs=351.9

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCc-EEEEEEeCCCcEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVW  470 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~-l~l~s~~~d~~i~vw  470 (1092)
                      +.|-...-..-.||+|+++++....+ .|.||...+|+++.   .+.+|..++..+.+.|.... .++++++.||.|++|
T Consensus        12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw   87 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW   87 (792)
T ss_pred             eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence            44444444556799999999888665 59999999999887   78899999999999987764 478899999999999


Q ss_pred             ECCCCceeEEEecCCcCeEEEeecc------------cCCccEEEEEecC--CeEEEEEcCCCCce-EE-ecCCCCceEE
Q 001362          471 DAVTGSRTYSFEGHGAPVYSLCPHA------------KENIHFIFSISVD--GKIKAWLYDSLGAR-VD-YDAPGLGCTR  534 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~~~l~s~~~d--g~i~vwd~~~~~~~-~~-~~~~~~~i~~  534 (1092)
                      |...+..++++..+.. +..+.+.+            ..+-..+.+.+.+  +.++-+.+.+.... .. ...+. .-.+
T Consensus        88 d~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~  165 (792)
T KOG1963|consen   88 DWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKS  165 (792)
T ss_pred             cCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCcc
Confidence            9999999998865432 33322211            1111111111111  11111111111100 00 11111 1356


Q ss_pred             EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE-EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--Cc
Q 001362          535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQ  611 (1092)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~--~~  611 (1092)
                      +.+++.|.+...+.     +..+.+|+..++.... ....+..|...+++.+++|+++++++|..||.|.+|.--.  +.
T Consensus       166 I~~~~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~  240 (792)
T KOG1963|consen  166 IVDNNSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD  240 (792)
T ss_pred             EEEcCCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccc
Confidence            78888888777665     3348888887755111 1111222335579999999999999999999999996433  22


Q ss_pred             eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeec
Q 001362          612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN  691 (1092)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  691 (1092)
                      ....-..|-+...|.+++|+++|.+|.+|+..+.+.+|.+.+++... +.                              
T Consensus       241 ~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf-LP------------------------------  289 (792)
T KOG1963|consen  241 SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF-LP------------------------------  289 (792)
T ss_pred             cccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc-cc------------------------------
Confidence            22222223334579999999999999999999999999998875211 11                              


Q ss_pred             CCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcC
Q 001362          692 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS  771 (1092)
Q Consensus       692 ~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~  771 (1092)
                                                            .  -.+.|..+.+|||+...+....|..|.+-..+.-..   
T Consensus       290 --------------------------------------R--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~---  326 (792)
T KOG1963|consen  290 --------------------------------------R--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI---  326 (792)
T ss_pred             --------------------------------------c--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh---
Confidence                                                  1  345688889999999888888898888876533211   


Q ss_pred             cccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC-CCEEEEEeCCeEEEEEcCCceeeEEec-----CCC--
Q 001362          772 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSASGGVISLYIVMTFKTILTIM-----PPS--  843 (1092)
Q Consensus       772 ~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~d-g~~l~~~sdg~i~iwd~~~~~~~~~~~-----~~~--  843 (1092)
                           ..++.-..+.+..      . ......-.+.++++|- +..+..+-.|.|.+||+.+.+.+..+.     .+.  
T Consensus       327 -----k~tIsgi~~~~~~------~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~  394 (792)
T KOG1963|consen  327 -----KSTISGIKPPTPS------T-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGD  394 (792)
T ss_pred             -----hhhccCccCCCcc------c-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCc
Confidence                 0011111111000      0 0013444567888884 444444457999999998877665542     122  


Q ss_pred             ----CCeEEEEEcCCCCCEEEEEe--------CCC--cEEEEEcCCcee----eE-eeccccCCeEEEEEcCC-C-CEEE
Q 001362          844 ----PTATSLAFNPHDNNVIAIGM--------DDS--TILIYNARSSEV----IS-KLEGHSKRVTGLVFSDA-L-NILV  902 (1092)
Q Consensus       844 ----~~i~~l~~s~~d~~~lasg~--------~dg--~v~iwd~~~~~~----~~-~l~~h~~~V~~l~~spd-g-~~l~  902 (1092)
                          -.+++++.+. .|.+++|+-        .||  .+++|-......    .. ....|...+...+|.+. . ..++
T Consensus       395 ~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~v  473 (792)
T KOG1963|consen  395 VNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCV  473 (792)
T ss_pred             ceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeE
Confidence                2468888888 699999864        333  567887654332    22 22458887777666542 2 3899


Q ss_pred             EEeCCCcEEEEEcCCCceee-----eeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCC
Q 001362          903 SSGGDAQIFVWDVDGWGIQT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS  977 (1092)
Q Consensus       903 s~s~Dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h  977 (1092)
                      |+|.||.++||-+.+.+...     ..+.....-+.   ..+++++||.||..|+++.+++|.+||..+...+......-
T Consensus       474 ta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~  550 (792)
T KOG1963|consen  474 TASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSR  550 (792)
T ss_pred             EeccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccccc
Confidence            99999999999984432111     11222211122   36899999999999999999999999998843322222222


Q ss_pred             CCCEEEEEEec----CCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCC------CccCcccceE---EEECCCCCC
Q 001362          978 SVPISQATFSC----DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT------TSCLHVYPHA---IAAHPLKPT 1044 (1092)
Q Consensus       978 ~~~v~~l~fs~----dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~---~~~~p~~~~ 1044 (1092)
                      ..++..+.|..    ++.  +......++.+|++-+..+...+.........      .....+-+..   +++.|   .
T Consensus       551 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~~f~vi~~~p---~  625 (792)
T KOG1963|consen  551 NWPIAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGSTAFAVICWLP---E  625 (792)
T ss_pred             ccchHhHhhhcccccccc--eeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCccceEEEeecc---c
Confidence            34444444433    333  23335678999999999888744322222220      0011122222   23333   2


Q ss_pred             EEE--------EEeCCCcEEEEeCCCCC
Q 001362         1045 QFA--------VGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1045 ~l~--------~~~~dg~v~~w~~~~~~ 1064 (1092)
                      .+.        +.+.++.|.+|+...++
T Consensus       626 ~~~~~k~~~~~f~~~~~ril~F~~~~pk  653 (792)
T KOG1963|consen  626 LLLVVKSIEQIFRGRDSRILIFSGDSPK  653 (792)
T ss_pred             chhhhhhhhhhcccccceEEEecCCCch
Confidence            333        77788888888886655

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=1.6e-24  Score=243.83  Aligned_cols=270  Identities=17%  Similarity=0.198  Sum_probs=210.9

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc----------cceEEEcccccceeEEEEec-CCCcEEEEEEeC
Q 001362          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD  463 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~----------~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~  463 (1092)
                      |-..|.....++|+..+++++.+.....|+...+..+          .....+.+|.+.|.+++|+| ++.  +|++|+.
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~   96 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE   96 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence            4456677778888777788777777777876544321          11224779999999999999 777  7999999


Q ss_pred             CCcEEEEECCCC-------ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001362          464 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  536 (1092)
Q Consensus       464 d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~  536 (1092)
                      |++|++||+.++       +.+..+.+|...|.+++|+|.. +.+|++++.|++|++||+.++.....+..|...|.+++
T Consensus        97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla  175 (493)
T PTZ00421         97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE  175 (493)
T ss_pred             CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence            999999999765       3567889999999999998753 35899999999999999999888888888999999999


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCc-
Q 001362          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ-  611 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s----~dg~i~iwd~~~~~-  611 (1092)
                      |+|+|.+|++++.    ++.|++||+++++.+..+.+|.  ...+..+.|.+++..+++++    .|+.|++||+++.. 
T Consensus       176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~  249 (493)
T PTZ00421        176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS  249 (493)
T ss_pred             EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence            9999999999876    6679999999999998888876  23345678899888888754    47899999998754 


Q ss_pred             eEEEEeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCceeeeccc-ccCceeeeeecC
Q 001362          612 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP  674 (1092)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~  674 (1092)
                      .+.....+. ...+....|+++++++++++ .|+.|++|++.++..+..... ....+..+++.|
T Consensus       250 p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p  313 (493)
T PTZ00421        250 PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP  313 (493)
T ss_pred             ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence            333333222 23455677899999999887 499999999998876654432 233455555554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.5e-24  Score=209.86  Aligned_cols=241  Identities=19%  Similarity=0.278  Sum_probs=205.1

Q ss_pred             CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC--EEEEEeCCCcEEEEEcCC
Q 001362          799 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARS  875 (1092)
Q Consensus       799 ~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~v~iwd~~~  875 (1092)
                      ..|...++++|+  ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ ...  .|++|+.||.|.+|+...
T Consensus        40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~  116 (362)
T KOG0294|consen   40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS  116 (362)
T ss_pred             cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence            359999999998  679999998 89999999999999999999999999999998 554  899999999999999999


Q ss_pred             ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe
Q 001362          876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH  955 (1092)
Q Consensus       876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~  955 (1092)
                      .+++..+++|.+.|+.++.+|.|++.++.+.|+.++.||+-.|+......+..         ..+.+.|+|.|.+++++.
T Consensus       117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~  187 (362)
T KOG0294|consen  117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSG  187 (362)
T ss_pred             eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEe
Confidence            99999999999999999999999999999999999999999877443222222         234599999999999998


Q ss_pred             CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceE
Q 001362          956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035 (1092)
Q Consensus       956 d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1035 (1092)
                      .+.|-+|.+.+.........  ..++.++.|- ++..|++|+.|+.|.+||.+++...+.+.        .|...|..+.
T Consensus       188 ~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~i~  256 (362)
T KOG0294|consen  188 RNKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL--------AHENRVKDIA  256 (362)
T ss_pred             ccEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee--------cchhheeeeE
Confidence            99999999988777665432  3567777775 56789999999999999999988887776        3566777665


Q ss_pred             EEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001362         1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus      1036 ~~~~p~~~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
                      .--.| ++.+|++++.||.|++||+...
T Consensus       257 ~~~~~-~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  257 SYTNP-EHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEecC-CceEEEEeccCceEEEEEcccc
Confidence            54555 5789999999999999999644

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.94  E-value=1.3e-23  Score=220.37  Aligned_cols=217  Identities=16%  Similarity=0.184  Sum_probs=162.4

Q ss_pred             eeecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCccc---ceEEEcccccceeEEEEecCCCcEEEEEEeCCC
Q 001362          390 ALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  465 (1092)
Q Consensus       390 ~~l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~---~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~  465 (1092)
                      .++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|....   .-..+.+..-.|.++.|+|.... +++ .+..|
T Consensus        73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~-s~a~g  150 (1012)
T KOG1445|consen   73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILA-SGAHG  150 (1012)
T ss_pred             ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEE-eccCc
Confidence            34889999999999999 77899999999999999998543221   11223344457899999998775 344 45588


Q ss_pred             cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCC-ceEEEEEccCCCE
Q 001362          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGL-GCTRMAYSANGRR  543 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~-~i~~~~~s~dg~~  543 (1092)
                      +++|||+.+++.+..+.+|...|.++.|  +.||.+|++.+.|+.|+|||.+.... +.....|++ .-..+.|..+-.+
T Consensus       151 ~v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~r  228 (1012)
T KOG1445|consen  151 SVYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWER  228 (1012)
T ss_pred             eEEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhh
Confidence            9999999999999999999999999999  66899999999999999999886543 445555554 3345677766667


Q ss_pred             EEEEecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCce
Q 001362          544 LFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQL  612 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-s~dg~i~iwd~~~~~~  612 (1092)
                      |++.+.+......|++||.+.. ..+.++.-..  ...|.---|.||.+.++.+ -.+.++..+.+...+.
T Consensus       229 lisTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qP  297 (1012)
T KOG1445|consen  229 LISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQP  297 (1012)
T ss_pred             hhhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEEEEEecCCCc
Confidence            8877766655677999998753 3444444332  2345555688998877654 4677888888776543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=2.3e-26  Score=226.22  Aligned_cols=293  Identities=11%  Similarity=0.157  Sum_probs=233.1

Q ss_pred             cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ++-+..|.||.+.|.|+|=+|..-..+|+|+.||.|+|||+.+.+++.+                   +..|.+.|..++
T Consensus        56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~  116 (433)
T KOG0268|consen   56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGIC  116 (433)
T ss_pred             ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEE
Confidence            4456678999999999999999844689999999999999999888775                   667999999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001362          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  483 (1092)
                      +..  ..+++++.|.+|+.|.++.. .++   ++.+ ...+..+.-+..+.  .++|||.+  |.|||.....++.++.-
T Consensus       117 v~~--~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe~--i~IWD~~R~~Pv~smsw  185 (433)
T KOG0268|consen  117 VTQ--TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGEQ--IDIWDEQRDNPVSSMSW  185 (433)
T ss_pred             ecc--cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCce--eeecccccCCccceeec
Confidence            987  77889999999999998863 222   3333 33456666665566  68888864  99999999999999988


Q ss_pred             CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001362          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      ....|.++.|+|... .+|++++.|+.|.+||++...++...... -.-..++|+|.+-.++++..    +..++.+|.+
T Consensus       186 G~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~E----D~nlY~~DmR  259 (433)
T KOG0268|consen  186 GADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANE----DHNLYTYDMR  259 (433)
T ss_pred             CCCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccc----cccceehhhh
Confidence            888999999988754 58889999999999999998876644322 13456899996655655543    7779999987


Q ss_pred             CC-eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001362          564 EG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       564 ~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      .- ..+..+.+|.   ..|..+.|+|.|+-+++||.|.+|+||....+..-..... .....|.++.||.|.+++++|++
T Consensus       260 ~l~~p~~v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSd  335 (433)
T KOG0268|consen  260 NLSRPLNVHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSD  335 (433)
T ss_pred             hhcccchhhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCC
Confidence            53 3455555655   8999999999999999999999999999987654333221 12245899999999999999999


Q ss_pred             CCeEEEEECCCCce
Q 001362          643 ENRIKILETPESNS  656 (1092)
Q Consensus       643 dg~i~iw~~~~~~~  656 (1092)
                      |+.|++|.....+.
T Consensus       336 d~nvRlWka~Asek  349 (433)
T KOG0268|consen  336 DGNVRLWKAKASEK  349 (433)
T ss_pred             Ccceeeeecchhhh
Confidence            99999998775443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=6.7e-25  Score=223.21  Aligned_cols=250  Identities=21%  Similarity=0.279  Sum_probs=213.1

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceE--------------EE-cccccceeEEEEecCCCcE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--------------EI-DAHVGNVNDLAFSAPCKQI  456 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--------------~~-~~h~~~v~~~~~s~d~~~l  456 (1092)
                      ...|.-+|.+++++||+++..+++.+++|.=|++.+|...+...              .- ++|...+.+++.|+||+  
T Consensus       138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk--  215 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK--  215 (479)
T ss_pred             eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence            55699999999999999999999999999999999887431110              11 37888999999999999  


Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001362          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  536 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~  536 (1092)
                      +|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|...  ...+++++.|+.|++|+++....+.++.+|...|..+.
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG--TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID  293 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccceeeeeeecC--ccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence            8999999999999999999999999999999999999643  35799999999999999999998999999999999998


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001362          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  616 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~  616 (1092)
                      ...-++.+-+++.    |.++++|++. .+....+.++.   +.+.|++|-.+ ..+++|+.+|.|.+|++.+.+++.+.
T Consensus       294 aL~reR~vtVGgr----DrT~rlwKi~-eesqlifrg~~---~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  294 ALSRERCVTVGGR----DRTVRLWKIP-EESQLIFRGGE---GSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             hhcccceEEeccc----cceeEEEecc-ccceeeeeCCC---CCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence            8888887777765    6779999994 33445666766   78999999765 68999999999999999999988776


Q ss_pred             eCCCC----------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001362          617 DAGGG----------LPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       617 ~~~~~----------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      ....+          ...|++++..|...++|+|+.+|.|++|...++
T Consensus       365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            43211          125788999999999999999999999998876

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=4.9e-25  Score=247.52  Aligned_cols=279  Identities=17%  Similarity=0.241  Sum_probs=242.1

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001362          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  474 (1092)
                      +...+.+..|.  +.++++++.+++|++||..++..+..  .+.||.+.|++++|..-+.  .+++|+.|.+++|||..+
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST  280 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence            56788888888  67899999999999999999876552  3889999999999987555  799999999999999999


Q ss_pred             CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001362          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      |++.+.+.+|...|.++..    ....+++|+.|.+|++|++.++..+..+.+|..+|.++..+  +.++++++.    +
T Consensus       281 g~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d  350 (537)
T KOG0274|consen  281 GECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D  350 (537)
T ss_pred             CcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence            9999999999999999976    34578899999999999999999999999999999999987  889999886    5


Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCCCCceEEEccC
Q 001362          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKN  633 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~  633 (1092)
                      +.|.+||+.+++++..+.+|.   ..|.++.+.+. +.+++|+.|++|++||+.++ +++.++..|...  +..+  ...
T Consensus       351 ~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~l--~~~  422 (537)
T KOG0274|consen  351 GTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSSL--LLR  422 (537)
T ss_pred             ceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--cccc--ccc
Confidence            579999999999999999988   99999988776 89999999999999999999 899999877542  3333  345


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeeccc-ccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001362          634 GTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1092)
Q Consensus       634 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l  712 (1092)
                      +++|++++.|++|++||..++..+..+.+ +...+..+...                        ...+++++.++++++
T Consensus       423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~------------------------~~~il~s~~~~~~~l  478 (537)
T KOG0274|consen  423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG------------------------KEEILCSSDDGSVKL  478 (537)
T ss_pred             cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC------------------------cceEEEEecCCeeEE
Confidence            88999999999999999999999999988 55666655543                        356788999999999


Q ss_pred             eccccccCc
Q 001362          713 EKPLFARPS  721 (1092)
Q Consensus       713 w~~~~~~~~  721 (1092)
                      ||+......
T Consensus       479 ~dl~~~~~~  487 (537)
T KOG0274|consen  479 WDLRSGTLI  487 (537)
T ss_pred             EecccCchh
Confidence            998755443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.2e-25  Score=237.56  Aligned_cols=248  Identities=21%  Similarity=0.253  Sum_probs=210.6

Q ss_pred             CCCcEE---EEEEC-CCCCEEEEEeCCCEEEEEEccCCCcc---cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001362          395 PGVSVN---RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1092)
Q Consensus       395 h~~~V~---~l~~s-pdg~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  467 (1092)
                      |...|.   ++..+ |.++||.+|+.||.|++|++......   .....+..|...|+.++...+|+  .|+++|.|-+|
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTV   97 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTV   97 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceE
Confidence            444444   44454 36788999999999999998754331   12346788999999999999998  79999999999


Q ss_pred             EEEECCCC--ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--eE--------Eec-CCCCceEE
Q 001362          468 KVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTR  534 (1092)
Q Consensus       468 ~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~--------~~~-~~~~~i~~  534 (1092)
                      ++|+...+  -++.++..|.+.|.++++. ..+...+++|+-|+.|.+||++++..  ..        .+. ++..+|++
T Consensus        98 K~W~~~~~~~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS  176 (735)
T KOG0308|consen   98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS  176 (735)
T ss_pred             EEeecccCcchhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence            99999887  6788899999999999984 34567999999999999999997733  11        122 56678999


Q ss_pred             EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 001362          535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT  614 (1092)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~  614 (1092)
                      ++.++.|..+++|+.    ++.+++||.++++.+..+.||.   ..|..+..++||..++++|.||+|++||+...+++.
T Consensus       177 LA~N~t~t~ivsGgt----ek~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~  249 (735)
T KOG0308|consen  177 LAMNQTGTIIVSGGT----EKDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA  249 (735)
T ss_pred             eecCCcceEEEecCc----ccceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceee
Confidence            999999988888876    4559999999999999999999   999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001362          615 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       615 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      ++..|..  .|.++..+|+-.++.+|+.||.|..=|+.+.
T Consensus       250 T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  250 TYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            9988755  4899999999999999999999998888764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=3.6e-24  Score=215.75  Aligned_cols=284  Identities=16%  Similarity=0.184  Sum_probs=243.9

Q ss_pred             CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..+.++...|... .+.+|+.|..+.++|..+++.+..                   ++||.-.|+.+.|+|+...++++
T Consensus       220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a  279 (506)
T KOG0289|consen  220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA  279 (506)
T ss_pred             CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence            4788888888744 689999999999999999988875                   88999999999999999999999


Q ss_pred             eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC--CcCeEEEe
Q 001362          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH--GAPVYSLC  492 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~  492 (1092)
                      +.|..|+||.........   ....|.++|+.+..+|.|.  +|++++.|++..+.|+++|+.+......  .-.+++.+
T Consensus       280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~  354 (506)
T KOG0289|consen  280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA  354 (506)
T ss_pred             CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence            999999999998766443   5678999999999999999  8999999999999999999988776542  23478888


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001362          493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  572 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~  572 (1092)
                      |+|  ||.+|.+|..||.+++||+..+.....+.+|.++|..++|+.+|-+|+++..    ++.|.+||++.-+...++.
T Consensus       355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence            865  7789999999999999999999999999999999999999999999999986    5559999999888888887


Q ss_pred             eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001362          573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       573 ~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      ...  ...+.++.|.+.|.++++++.|=.|++++-.+.+.......+.+......+.|....+++++++.|..++++.+
T Consensus       429 l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  429 LDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            766  45799999999999999998887777777655544433333333345789999999999999999999888754

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8.6e-25  Score=204.93  Aligned_cols=200  Identities=18%  Similarity=0.234  Sum_probs=165.5

Q ss_pred             CCCCeeEEEEecC-CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001362          801 SQEAVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1092)
Q Consensus       801 ~~~~v~~~~~s~d-g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1092)
                      |..+|.++.+.+- ++.+++++ |++|++|+....+.++++.+|...|...+|+|...+++++++.|+++++||++....
T Consensus       103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk  182 (311)
T KOG0277|consen  103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK  182 (311)
T ss_pred             hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc
Confidence            6666666666653 33444455 899999999999999999999999999999999999999999999999999987544


Q ss_pred             eEeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEE-E-Ee
Q 001362          879 ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-L-VH  955 (1092)
Q Consensus       879 ~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la-~-~~  955 (1092)
                      ...+..|...|.++.|+. +.+.|+|++.|+.|++||+..-+    .++..+.+|.-   .|..+.|||...-|+ + +.
T Consensus       183 ~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL~gh~~---AVRkvk~Sph~~~lLaSasY  255 (311)
T KOG0277|consen  183 FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFELNGHGL---AVRKVKFSPHHASLLASASY  255 (311)
T ss_pred             eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceeecCCce---EEEEEecCcchhhHhhhccc
Confidence            444889999999999997 66889999999999999998743    23444566654   799999999876554 4 68


Q ss_pred             CCcEEEEEcCCceeeeeeccCCCCCEEEEEEec-CCCEEEEEECCCcEEEEEc
Q 001362          956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       956 d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
                      |=+++|||...+.........|+.-|..+.||+ ++.++|+++.|+.++||+.
T Consensus       256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            899999999876665555778999999999998 7789999999999999984

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=2.7e-24  Score=206.92  Aligned_cols=274  Identities=16%  Similarity=0.161  Sum_probs=214.9

Q ss_pred             ecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001362          392 VRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       392 l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      -...++.|.+++||| ...+++++|.|++|++|+++....+.. .....|.++|.+++|+.||.  .+++|+-|+.+++|
T Consensus        23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW   99 (347)
T ss_pred             CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence            335678999999999 566667889999999999987322221 24557999999999999998  79999999999999


Q ss_pred             ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001362          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      |+.+++ +..+..|.++|.++.|.+..+-..|++||.|++|++||.+...+...+..++ .++++..  -..+++++.. 
T Consensus       100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata-  174 (347)
T KOG0647|consen  100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA-  174 (347)
T ss_pred             EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec-
Confidence            999994 5677789999999999877766799999999999999999888887776655 3333322  2334555544 


Q ss_pred             CCCceeEEEEeCCCCeEEE-EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeCCCC------
Q 001362          551 KEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGG------  621 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~------  621 (1092)
                         +..|.+|+++++.... .....-  ...+.+++..++....+.|+-+|.+.|..+..+  +.-.++..|..      
T Consensus       175 ---~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~  249 (347)
T KOG0647|consen  175 ---ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND  249 (347)
T ss_pred             ---CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence               4559999997664332 222221  356889999999888899999999999988876  33334444432      


Q ss_pred             -CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcc
Q 001362          622 -LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  678 (1092)
Q Consensus       622 -~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  678 (1092)
                       .-.|++++|+|.-..|++++.||++.+||-.....+.....+..+|++..|+..+..
T Consensus       250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~i  307 (347)
T KOG0647|consen  250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSI  307 (347)
T ss_pred             ceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCE
Confidence             235788999999999999999999999999988888888999999999999855444

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=4.4e-24  Score=215.09  Aligned_cols=281  Identities=17%  Similarity=0.238  Sum_probs=241.2

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001362          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  476 (1092)
                      -.+.++...|....+++|+.|.++.++|..+++.+.   .++||...|+.+.|+|+..  .+++++.|..|+||......
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s  294 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS  294 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence            467788888888899999999999999999987776   7899999999999999998  79999999999999998888


Q ss_pred             eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CCceEEEEEccCCCEEEEEecCCCCc
Q 001362          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      .......|..+|+.+..++  +|.||++++.||+..+.|++++.........  .-.+++.+|+|||..+.++..    +
T Consensus       295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d  368 (506)
T KOG0289|consen  295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D  368 (506)
T ss_pred             Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence            8888899999999999866  5579999999999999999999887665543  346899999999999988875    7


Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001362          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      +.|.+||+.++..+..|.+|.   ++|..++|+.+|-+++++++|+.|++||++.-+...++...... .+.++.|.+.|
T Consensus       369 ~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SG  444 (506)
T KOG0289|consen  369 GVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSG  444 (506)
T ss_pred             ceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCC
Confidence            789999999999999999988   99999999999999999999999999999999988888877654 68999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCC--ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001362          635 TLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l  712 (1092)
                      .+|+.++.+=.|++++-.+.  +.+..+..|.+..+++.|.                      ...+++++++.|..+++
T Consensus       445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg----------------------~~aq~l~s~smd~~l~~  502 (506)
T KOG0289|consen  445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG----------------------EHAQYLASTSMDAILRL  502 (506)
T ss_pred             CeEEeecceeEEEEEecccccceeeehhhhcccccceeeec----------------------ccceEEeeccchhheEE
Confidence            99999988767777664443  4555566666666666665                      45677888888877766


Q ss_pred             ec
Q 001362          713 EK  714 (1092)
Q Consensus       713 w~  714 (1092)
                      +.
T Consensus       503 ~a  504 (506)
T KOG0289|consen  503 YA  504 (506)
T ss_pred             ee
Confidence            54

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.4e-24  Score=231.43  Aligned_cols=276  Identities=20%  Similarity=0.254  Sum_probs=238.3

Q ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001362          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      ..-+.|| ....||+|... .|++|+..++.... .  ...+...|+++.|+++|.  +|+.|..+|.|.|||..+.+.+
T Consensus       180 ~nlldWs-s~n~laValg~-~vylW~~~s~~v~~-l--~~~~~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~~~k~~  252 (484)
T KOG0305|consen  180 LNLLDWS-SANVLAVALGQ-SVYLWSASSGSVTE-L--CSFGEELVTSVKWSPDGS--HLAVGTSDGTVQIWDVKEQKKT  252 (484)
T ss_pred             hhHhhcc-cCCeEEEEecc-eEEEEecCCCceEE-e--EecCCCceEEEEECCCCC--EEEEeecCCeEEEEehhhcccc
Confidence            3447788 45577777544 59999999987433 2  223378999999999999  8999999999999999999999


Q ss_pred             EEEec-CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001362          479 YSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1092)
Q Consensus       479 ~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1092)
                      ..+.+ |...|.+++|.    +..+.+|+.||.|..+|++..+.... +..|...|..+.|++|++++++++.    |+.
T Consensus       253 ~~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn----DN~  324 (484)
T KOG0305|consen  253 RTLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN----DNV  324 (484)
T ss_pred             ccccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC----ccc
Confidence            99999 99999999994    46899999999999999998887665 8889999999999999999999987    667


Q ss_pred             EEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC-CEEEEE--eCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001362          557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  633 (1092)
Q Consensus       557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1092)
                      +.|||......+..+..|.   ..|.+++|+|-. ..|++|  +.|+.|++||..++..+..+...   ..|..+.|++.
T Consensus       325 ~~Iwd~~~~~p~~~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~  398 (484)
T KOG0305|consen  325 VFIWDGLSPEPKFTFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG---SQVCSLIWSKK  398 (484)
T ss_pred             eEeccCCCccccEEEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC---CceeeEEEcCC
Confidence            9999998889999999988   999999999975 456664  48999999999999999888654   45899999998


Q ss_pred             CCEEEEE--eCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccc
Q 001362          634 GTLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1092)
Q Consensus       634 ~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1092)
                      .+-++++  ..++.|.||+..+...+..+.+|...|..++++                      |||..+++++.|.+++
T Consensus       399 ~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~S----------------------Pdg~~i~t~a~DETlr  456 (484)
T KOG0305|consen  399 YKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALS----------------------PDGETIVTGAADETLR  456 (484)
T ss_pred             CCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEEC----------------------CCCCEEEEecccCcEE
Confidence            8766664  457899999999999999999999999999996                      7899999999999999


Q ss_pred             eecccc
Q 001362          712 VEKPLF  717 (1092)
Q Consensus       712 lw~~~~  717 (1092)
                      +|++-.
T Consensus       457 fw~~f~  462 (484)
T KOG0305|consen  457 FWNLFD  462 (484)
T ss_pred             eccccC
Confidence            999653

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=6.4e-24  Score=205.25  Aligned_cols=251  Identities=21%  Similarity=0.334  Sum_probs=184.8

Q ss_pred             eeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCc-----ccceEEEcccccceeEEEEecCCCcEEEEEEeCC
Q 001362          390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD  464 (1092)
Q Consensus       390 ~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d  464 (1092)
                      ..|++|...|++++||.||++||+++.|++|++|++..-..     ++...+    -+.-+.++|+||-+- +++++-..
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s-~vv~~~~g  154 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKS-VVVSVKRG  154 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcce-EEEEEccC
Confidence            34889999999999999999999999999999999976321     221111    124578899999886 56666677


Q ss_pred             CcEEEEECCC---CceeEE--------E-ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCce
Q 001362          465 KTIKVWDAVT---GSRTYS--------F-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGC  532 (1092)
Q Consensus       465 ~~i~vwd~~~---~~~~~~--------~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i  532 (1092)
                      .++++|-+..   |.....        | +.|.-.+..+-.  .+++.+|++++.|..|.+|++. ++.+..+......-
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n  231 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSN  231 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeeccccccc
Confidence            7899997543   222111        1 235555655554  5577899999999999999998 66677777766677


Q ss_pred             EEEEEccCCCEEEEEecCCCCceeEEEEeCC---CCe-----EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001362          533 TRMAYSANGRRLFSCGTSKEGESFLVEWNES---EGA-----IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI  604 (1092)
Q Consensus       533 ~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~---~~~-----~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~i  604 (1092)
                      +..+.||+|+++++++...+    |.+|.+-   .|+     .+..+.||.   ..|..++|+++..++++.+.||++++
T Consensus       232 ~~aavSP~GRFia~~gFTpD----VkVwE~~f~kdG~fqev~rvf~LkGH~---saV~~~aFsn~S~r~vtvSkDG~wri  304 (420)
T KOG2096|consen  232 YDAAVSPDGRFIAVSGFTPD----VKVWEPIFTKDGTFQEVKRVFSLKGHQ---SAVLAAAFSNSSTRAVTVSKDGKWRI  304 (420)
T ss_pred             cceeeCCCCcEEEEecCCCC----ceEEEEEeccCcchhhhhhhheeccch---hheeeeeeCCCcceeEEEecCCcEEE
Confidence            78899999999999988555    8999863   222     244577887   89999999999999999999999999


Q ss_pred             EECCC-------CceEEEE--eCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCce
Q 001362          605 WDMNK-------VQLLTTI--DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS  656 (1092)
Q Consensus       605 wd~~~-------~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~  656 (1092)
                      ||.+-       .+.+.+.  ..+........++.+|+|+.||+... ..+.++..++++.
T Consensus       305 wdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~  364 (420)
T KOG2096|consen  305 WDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKD  364 (420)
T ss_pred             eeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCcc
Confidence            99753       1222222  11222233458999999998887655 5788887776543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.7e-23  Score=202.72  Aligned_cols=272  Identities=20%  Similarity=0.292  Sum_probs=215.8

Q ss_pred             CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001362          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      ++.|+.|.|+|.+.. |++++.||++++||+...+....                    -.|+.++.+++|.+ ...+++
T Consensus        13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~   70 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT   70 (323)
T ss_pred             hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence            679999999999985 55567999999999998755532                    23899999999997 567889


Q ss_pred             EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEee
Q 001362          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  493 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~  493 (1092)
                      |+.||.|+.+|+.++...    .+..|..+|.|+.+++-..  .+++||.|++|++||.........+. ....|.++..
T Consensus        71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v  143 (323)
T KOG1036|consen   71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV  143 (323)
T ss_pred             eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence            999999999999998655    3678999999999998766  79999999999999988766665554 3347888865


Q ss_pred             cccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeEEE
Q 001362          494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR  569 (1092)
Q Consensus       494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~~~  569 (1092)
                          .+..|+.|+.|..+.+||+++.........  -.-.+.++++-|++.-.++++.+  |...+..+|..  ..+...
T Consensus       144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSie--GRVavE~~d~s~~~~skky  217 (323)
T KOG1036|consen  144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIE--GRVAVEYFDDSEEAQSKKY  217 (323)
T ss_pred             ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeec--ceEEEEccCCchHHhhhce
Confidence                557899999999999999998776653322  23368899999988877777762  23334444443  113445


Q ss_pred             EEeecccc------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001362          570 TYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       570 ~~~~~~~~------~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      .|+.|...      ..+|++++|+|-...+++|+.||.|.+||+.+.+.+..+...  ...|..++|+.+|..||+++.
T Consensus       218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence            56666532      247899999999999999999999999999999988887644  235899999999999999976

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=4e-25  Score=217.46  Aligned_cols=284  Identities=14%  Similarity=0.225  Sum_probs=233.5

Q ss_pred             EEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEE
Q 001362          436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL  515 (1092)
Q Consensus       436 ~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd  515 (1092)
                      .+.||...|.|++=+|..-. .++||+.||.|+|||+.+..++.++..|.+.|..+++..    ..+++++.|.+|+.|-
T Consensus        61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence            46799999999999998622 699999999999999999999999999999999999854    5799999999999998


Q ss_pred             cCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEE-
Q 001362          516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-  594 (1092)
Q Consensus       516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-  594 (1092)
                      ++.. ...++.+ ...+..+.-+..+..+++||.      .|.|||.....++..+.-..   +.+.++.|+|....++ 
T Consensus       136 ~~~~-p~~tilg-~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa  204 (433)
T KOG0268|consen  136 IDGP-PLHTILG-KSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA  204 (433)
T ss_pred             ccCC-cceeeec-cccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence            7763 3333322 234555666666777888865      39999999888888887665   7899999999876554 


Q ss_pred             EEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC-ceeeecccccCceeeeeec
Q 001362          595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN  673 (1092)
Q Consensus       595 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~  673 (1092)
                      +++.|+.|.+||++.+.++..+...-.   -+.++|+|++-.++++.+|..++.+|+... +++....+|...|.++.|+
T Consensus       205 s~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs  281 (433)
T KOG0268|consen  205 SCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS  281 (433)
T ss_pred             eeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence            566999999999999999887765433   478999998889999999999999999865 6777888899999888886


Q ss_pred             CCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEee
Q 001362          674 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA  753 (1092)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~  753 (1092)
                                            |.|+.+++|+.|.+||||....+......-..     .-..|.++.||-|.+++++|+
T Consensus       282 ----------------------ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~V~~Vk~S~Dskyi~SGS  334 (433)
T KOG0268|consen  282 ----------------------PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQHVFCVKYSMDSKYIISGS  334 (433)
T ss_pred             ----------------------CCcchhccccccceEEEeecCCCcchhhhhHh-----hhheeeEEEEeccccEEEecC
Confidence                                  67888999999999999998755443333221     345688999999999999999


Q ss_pred             cCCeeEEEeecC
Q 001362          754 SNGVHLMWRWPR  765 (1092)
Q Consensus       754 ~dg~i~lw~~~~  765 (1092)
                      .|+.|++|.-..
T Consensus       335 dd~nvRlWka~A  346 (433)
T KOG0268|consen  335 DDGNVRLWKAKA  346 (433)
T ss_pred             CCcceeeeecch
Confidence            999999998654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.1e-24  Score=203.07  Aligned_cols=252  Identities=20%  Similarity=0.334  Sum_probs=209.6

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec--CCCcEEEEEEeCCCcEE
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIK  468 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~  468 (1092)
                      +.+.|++.|..+...--|++||+++.|++|+|+.+..+.....+.+|.||.++|+.++|..  -|.  +|++++.||.|.
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI   83 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence            3667999999999888999999999999999999998877777789999999999999987  677  899999999999


Q ss_pred             EEECCCCc--eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEccC---
Q 001362          469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN---  540 (1092)
Q Consensus       469 vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d---  540 (1092)
                      ||.-++|+  ..+....|...|++++|.|..-|-.|++++.||.|.+.+++....   ......|.-.|+++++.|-   
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            99988774  345667899999999999999999999999999999999887622   3345667788999999986   


Q ss_pred             C-----------CEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCC----CEEEEEeCCCcEE
Q 001362          541 G-----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIK  603 (1092)
Q Consensus       541 g-----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~p~~----~~l~~~s~dg~i~  603 (1092)
                      |           +.|++++.    ++.|.+|+..+++  ..+++.+|.   +.|+.++|.|.-    .++++++.||++.
T Consensus       164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~vi  236 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVI  236 (299)
T ss_pred             ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEE
Confidence            5           56888876    6679999988763  345578887   999999999974    5789999999999


Q ss_pred             EEECCCC--ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001362          604 IWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       604 iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      ||.....  ....++. +.....+..+.||..|+.|++++.|+.+.+|.-.
T Consensus       237 Iwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  237 IWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             EEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            9976632  1222221 1223458899999999999999999999999755

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=9.4e-21  Score=209.20  Aligned_cols=279  Identities=16%  Similarity=0.218  Sum_probs=226.0

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCC-eeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001362          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  409 (1092)
                      ..|+..-+.++|.|+|. ++.+++.||.|++|+..+.. ....                   +.-++..|.+++..  +.
T Consensus        10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~~--s~   67 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIACY--SN   67 (933)
T ss_pred             hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEeec--cc
Confidence            37888999999999999 78889999999999987652 2211                   22266777777664  55


Q ss_pred             EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeE
Q 001362          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  489 (1092)
                      +|++|+.+++|.+|...+++.-.   .+...+-++.+++|+.+|+  +++.||.|-.|++-+..+......+++|.++|.
T Consensus        68 ~f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl  142 (933)
T KOG1274|consen   68 HFLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL  142 (933)
T ss_pred             ceEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence            99999999999999999886543   2445667899999999999  899999999999999999999999999999999


Q ss_pred             EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--------CCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001362          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1092)
Q Consensus       490 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1092)
                      ++.|+|  ++.+|++.+-||.|++||++++.....+..-        ...+..++|+|+|..+++.+.    ++.|.+|+
T Consensus       143 ~l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~  216 (933)
T KOG1274|consen  143 QLSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYS  216 (933)
T ss_pred             eeeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEc
Confidence            999965  6689999999999999999988776654332        235678999999766666654    66799999


Q ss_pred             CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001362          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1092)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  641 (1092)
                      ..+.+....+.....+ ..+..++|+|+|.||++++.||.|.|||.++-..      |.....|.+++|.|+.+.+-.-.
T Consensus       217 r~~we~~f~Lr~~~~s-s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~  289 (933)
T KOG1274|consen  217 RKGWELQFKLRDKLSS-SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLIT  289 (933)
T ss_pred             cCCceeheeecccccc-cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEe
Confidence            9999998888775522 3489999999999999999999999999998222      33345689999999988776666


Q ss_pred             CCCeEEEE
Q 001362          642 NENRIKIL  649 (1092)
Q Consensus       642 ~dg~i~iw  649 (1092)
                      ..|...+|
T Consensus       290 ~~g~~~~~  297 (933)
T KOG1274|consen  290 ALGTLGVS  297 (933)
T ss_pred             eccccccC
Confidence            55555554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.8e-23  Score=201.14  Aligned_cols=243  Identities=17%  Similarity=0.246  Sum_probs=203.2

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +..|.++|+++|.+  |.|+|+|+.|-+|+|||+.....+.   .+-.|.+.|+++.|.++-..-.|++|+.||.|.+|+
T Consensus        39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            67899999999996  8999999999999999999887665   566799999999999987433599999999999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      ...-.++.++++|.+.|+.++++|+  +++-++.+.|+.++.||+-.++.-....... ..+.+.|+|.|.+++..+.  
T Consensus       114 ~~~W~~~~slK~H~~~Vt~lsiHPS--~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~--  188 (362)
T KOG0294|consen  114 VGSWELLKSLKAHKGQVTDLSIHPS--GKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGR--  188 (362)
T ss_pred             cCCeEEeeeecccccccceeEecCC--CceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEec--
Confidence            9999999999999999999999875  4789999999999999998887766554433 2344899999998888764  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE-
Q 001362          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF-  630 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-  630 (1092)
                         ..|-+|.+.+......+...    ..+.++.|. ++..+++|++|+.|.+||..+..+...+..|.  ..|..+.+ 
T Consensus       189 ---~~i~i~q~d~A~v~~~i~~~----~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~--~RVK~i~~~  258 (362)
T KOG0294|consen  189 ---NKIDIYQLDNASVFREIENP----KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE--NRVKDIASY  258 (362)
T ss_pred             ---cEEEEEecccHhHhhhhhcc----ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch--hheeeeEEE
Confidence               44889988877665555432    246666665 46789999999999999999988888888664  46887774 


Q ss_pred             -ccCCCEEEEEeCCCeEEEEECCCC
Q 001362          631 -NKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       631 -s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                       .|++.+|++++.||.|++||+...
T Consensus       259 ~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  259 TNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ecCCceEEEEeccCceEEEEEcccc
Confidence             467899999999999999999865

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=5.8e-24  Score=204.97  Aligned_cols=323  Identities=11%  Similarity=0.150  Sum_probs=238.5

Q ss_pred             CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCc
Q 001362          620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK  699 (1092)
Q Consensus       620 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  699 (1092)
                      ++...|..++.......+.+++.|.+.+||.++++.++....+|.+.|.+++|+                      +.+.
T Consensus       146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh----------------------~s~~  203 (481)
T KOG0300|consen  146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH----------------------NSGL  203 (481)
T ss_pred             ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec----------------------cccc
Confidence            344568888888777889999999999999999999999999999999888887                      4567


Q ss_pred             cceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccC
Q 001362          700 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP  779 (1092)
Q Consensus       700 ~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~  779 (1092)
                      ++++++.|++-.||....+       ...|.......+     +.... + -. .|....-         .++..     
T Consensus       204 L~lTaSGD~taHIW~~av~-------~~vP~~~a~~~h-----SsEeE-~-e~-sDe~~~d---------~d~~~-----  254 (481)
T KOG0300|consen  204 LLLTASGDETAHIWKAAVN-------WEVPSNNAPSDH-----SSEEE-E-EH-SDEHNRD---------TDSSE-----  254 (481)
T ss_pred             eEEEccCCcchHHHHHhhc-------CcCCCCCCCCCC-----Cchhh-h-hc-ccccccc---------ccccc-----
Confidence            7788888888888875421       111110000000     00000 0 00 0000000         00000     


Q ss_pred             CccccCCCCCcee--eecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCC
Q 001362          780 PRLYQPRHGPQFM--VNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN  856 (1092)
Q Consensus       780 ~~~w~~~~g~~~~--~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~  856 (1092)
                           ...|..+.  ...++  +|...|.+..|-..|+.+++++ |.+..+||+++++.+..+.+|..+.+.++-+| ..
T Consensus       255 -----~sD~~tiRvPl~~lt--gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQ  326 (481)
T KOG0300|consen  255 -----KSDGHTIRVPLMRLT--GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQ  326 (481)
T ss_pred             -----ccCCceeeeeeeeee--ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cc
Confidence                 01111111  12233  5999999999999999999999 89999999999999999999999999999999 89


Q ss_pred             CEEEEEeCCCcEEEEEcCCc-eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001362          857 NVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  935 (1092)
Q Consensus       857 ~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  935 (1092)
                      +++++.+.|.+.++||+... ..+..|.||+..|+++.|.-| ..+++++.|.+|+|||+..-.    .++.+....   
T Consensus       327 rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMR----splATIRtd---  398 (481)
T KOG0300|consen  327 RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMR----SPLATIRTD---  398 (481)
T ss_pred             eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeecccc----CcceeeecC---
Confidence            99999999999999999853 457889999999999999866 578899999999999998732    123333222   


Q ss_pred             CCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeee---eeccCCCCCEEEEEEecCC--CEEEEEECCCcEEEEEcCC
Q 001362          936 APSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLK---QWFPISSVPISQATFSCDC--RMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus       936 ~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~---~~~~~h~~~v~~l~fs~dg--~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
                       .++..++.+..+..||.- .+..|++||+......+   .-..+|..-|+|++|+.+-  .-|+++|.|..+.=|++..
T Consensus       399 -S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  399 -SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             -CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence             358899999999999995 55679999997544332   2246799999999998764  4589999999999999875


Q ss_pred             C
Q 001362         1010 L 1010 (1092)
Q Consensus      1010 ~ 1010 (1092)
                      .
T Consensus       478 p  478 (481)
T KOG0300|consen  478 P  478 (481)
T ss_pred             c
Confidence            4

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=1.2e-22  Score=228.85  Aligned_cols=248  Identities=12%  Similarity=0.172  Sum_probs=189.8

Q ss_pred             EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC-CCcEEEEEEeCCCcEEEEECCCCc--------eeEEEecC
Q 001362          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH  484 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~--------~~~~~~~~  484 (1092)
                      |+.++.|++|+.....   ....+.+|.+.|.+++|+|+ +.  +|++|+.|++|+|||+.++.        .+..+.+|
T Consensus        50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH  124 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH  124 (568)
T ss_pred             CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence            5667889999987653   33478899999999999997 56  79999999999999997642        34567899


Q ss_pred             CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001362          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      ...|.+++|+|.. ..++++++.|++|++||+++......+. +...|.+++|+|+|.+|++++.    ++.|++||+++
T Consensus       125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs  198 (568)
T PTZ00420        125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK  198 (568)
T ss_pred             CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence            9999999998753 2356899999999999999888766665 4568999999999999998865    56799999999


Q ss_pred             CeEEEEEeeccccCCce-----EEEEEcCCCCEEEEEeCCC----cEEEEECCC-CceEEEEeCCCCCCCCceEEEccCC
Q 001362          565 GAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       565 ~~~~~~~~~~~~~~~~v-----~~~~~~p~~~~l~~~s~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      ++.+..+.+|.   +.+     ....|++++.++++++.|+    .|++||++. ++++..+..+.....+......++|
T Consensus       199 g~~i~tl~gH~---g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg  275 (568)
T PTZ00420        199 QEIASSFHIHD---GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG  275 (568)
T ss_pred             CcEEEEEeccc---CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence            99999999887   433     2334568999999988764    799999985 6666666555443323333334568


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecc-cccCceeeeeecCC
Q 001362          635 TLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPI  675 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~  675 (1092)
                      .++++|+.|+.|++|++..+.....-. .+..+..++++.|.
T Consensus       276 ~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk  317 (568)
T PTZ00420        276 LIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK  317 (568)
T ss_pred             CEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence            899999999999999998763222111 23445566666654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=1.4e-23  Score=223.99  Aligned_cols=275  Identities=15%  Similarity=0.211  Sum_probs=221.9

Q ss_pred             ccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeE-EE
Q 001362          731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FA  809 (1092)
Q Consensus       731 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~-~~  809 (1092)
                      .+|...|..+++.+.. .+++++.||++++|+-.....                      +-..  ...++.+-|.+ ++
T Consensus        11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~----------------------l~~~--~~~~~~g~i~~~i~   65 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY----------------------LETH--AFEGPKGFIANSIC   65 (745)
T ss_pred             ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc----------------------ccce--ecccCcceeeccce
Confidence            4688889888877665 589999999999997432211                      1001  11135555555 67


Q ss_pred             Eec-CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccC
Q 001362          810 LSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK  887 (1092)
Q Consensus       810 ~s~-dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~  887 (1092)
                      +.+ ++-.+++|+ |.++.+|......++..+.+|...|.++.... ++. +++|+.|.++++|..  +++...+.+|..
T Consensus        66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a  141 (745)
T KOG0301|consen   66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA  141 (745)
T ss_pred             eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence            664 444466666 89999999999999999999999999999887 665 999999999999965  566777999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCc
Q 001362          888 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL  967 (1092)
Q Consensus       888 ~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~  967 (1092)
                      .|+++++-|++ .++|||.|++|++|.-.+       .++++.+|..   .|+.+++-+++.+|-++.||.|++|++ +|
T Consensus       142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g  209 (745)
T KOG0301|consen  142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG  209 (745)
T ss_pred             heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence            99999999997 899999999999998755       7888899887   899999999999999999999999999 68


Q ss_pred             eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEE
Q 001362          968 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1047 (1092)
Q Consensus       968 ~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~ 1047 (1092)
                      +++.+ ..+|+.-|.++....++..++++++|+++++|+..  ++.+.+.    +|..    .+++  +.+-+  +.-++
T Consensus       210 e~l~~-~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPtt----siWs--a~~L~--NgDIv  274 (745)
T KOG0301|consen  210 EVLLE-MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPTT----SIWS--AKVLL--NGDIV  274 (745)
T ss_pred             ceeee-eeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCcc----ceEE--EEEee--CCCEE
Confidence            88887 66899999999988999999999999999999987  5555554    2322    3443  33332  45699


Q ss_pred             EEeCCCcEEEEeCC
Q 001362         1048 VGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1048 ~~~~dg~v~~w~~~ 1061 (1092)
                      +|+.||.||||-..
T Consensus       275 vg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  275 VGGSDGRVRVFTVD  288 (745)
T ss_pred             EeccCceEEEEEec
Confidence            99999999999875

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.7e-21  Score=212.36  Aligned_cols=516  Identities=16%  Similarity=0.180  Sum_probs=327.4

Q ss_pred             EcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCc-cEEEEEecCCeEEEEE
Q 001362          437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWL  515 (1092)
Q Consensus       437 ~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~vwd  515 (1092)
                      +.|-...-....||+|+++  ++.+. +..|.||...||.++..+.+|..++.++.+.+.... .++++++.||.|++||
T Consensus        12 lgg~n~~~~~avfSnD~k~--l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd   88 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKF--LFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWD   88 (792)
T ss_pred             eccccceecccccccCCcE--EEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEec
Confidence            3344444445689999994  44333 568999999999999999999999999999887664 6888999999999999


Q ss_pred             cCCCCceEEecCCCCceEEEEEcc---CCCEEEEEecCCCCceeEEEEeCCCCeEE-----EEEeeccc----cCCceEE
Q 001362          516 YDSLGARVDYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIK-----RTYQGLQL----QHNSVSV  583 (1092)
Q Consensus       516 ~~~~~~~~~~~~~~~~i~~~~~s~---dg~~l~~~~~~~~~~~~i~iwd~~~~~~~-----~~~~~~~~----~~~~v~~  583 (1092)
                      +.......++..... +..+.+.|   +-...+..+.  +....+...........     .++..+..    ....-..
T Consensus        89 ~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~--~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~  165 (792)
T KOG1963|consen   89 WSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSV--EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS  165 (792)
T ss_pred             CCCcEEEEEEecCCc-eeEEEechhHhCccceeEeec--ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence            998887777665442 33333322   1111221111  00111111111111111     11111110    0011355


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-e-CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001362          584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-D-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       584 ~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                      +.+++.+.+....- +..+.+|...++...... . .-.+...+++.+++|+++++|++..||.|.+|.--..      .
T Consensus       166 I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------~  238 (792)
T KOG1963|consen  166 IVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------S  238 (792)
T ss_pred             EEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------c
Confidence            67777776665554 455888888775511111 0 1122234789999999999999999999999974421      0


Q ss_pred             cccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEE
Q 001362          662 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT  741 (1092)
Q Consensus       662 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~  741 (1092)
                      .                                           .+-+.++|.-                 |...|.+++
T Consensus       239 ~-------------------------------------------~~~t~t~lHW-----------------H~~~V~~L~  258 (792)
T KOG1963|consen  239 D-------------------------------------------DSETCTLLHW-----------------HHDEVNSLS  258 (792)
T ss_pred             c-------------------------------------------ccccceEEEe-----------------cccccceeE
Confidence            0                                           0011111110                 667899999


Q ss_pred             EecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe
Q 001362          742 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS  821 (1092)
Q Consensus       742 ~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s  821 (1092)
                      |+++|.+|++|+..|.+.+|.+..++.                      ..   ++  .-..+|..+.+|||+.+.+...
T Consensus       259 fS~~G~~LlSGG~E~VLv~Wq~~T~~k----------------------qf---LP--RLgs~I~~i~vS~ds~~~sl~~  311 (792)
T KOG1963|consen  259 FSSDGAYLLSGGREGVLVLWQLETGKK----------------------QF---LP--RLGSPILHIVVSPDSDLYSLVL  311 (792)
T ss_pred             EecCCceEeecccceEEEEEeecCCCc----------------------cc---cc--ccCCeeEEEEEcCCCCeEEEEe
Confidence            999999999999999999998765421                      11   11  2577899999999999887775


Q ss_pred             -CCeEEEEEcCCceeeEEecCC-----------CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec------
Q 001362          822 -GGVISLYIVMTFKTILTIMPP-----------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------  883 (1092)
Q Consensus       822 -dg~i~iwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~------  883 (1092)
                       |+.|.+....+.....++.+.           .+-.+.++++| .-+.++..+..|.|.+||+.+.+.+..+.      
T Consensus       312 ~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~  390 (792)
T KOG1963|consen  312 EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY  390 (792)
T ss_pred             cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecc
Confidence             899999887666554444332           23457889999 67788888999999999998876554442      


Q ss_pred             -----cccCCeEEEEEcCCCCEEEEEe--------CCC--cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCC
Q 001362          884 -----GHSKRVTGLVFSDALNILVSSG--------GDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  948 (1092)
Q Consensus       884 -----~h~~~V~~l~~spdg~~l~s~s--------~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg  948 (1092)
                           .+.-.+++++.+-.|.+++|.-        .||  .+++|-...........-.....|..  ..+..+.+++..
T Consensus       391 ~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~~r  468 (792)
T KOG1963|consen  391 SDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNPTR  468 (792)
T ss_pred             cCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecCcc
Confidence                 1334588888998999999873        233  47889887654332221122222221  123333344433


Q ss_pred             C-EEEE-EeCCcEEEEEcCCce----------eeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC-CceEEe
Q 001362          949 T-RFLL-VHETHLAIYEAEELT----------CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCR 1015 (1092)
Q Consensus       949 ~-~la~-~~d~~i~lwd~~~~~----------~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~-~~~~~~ 1015 (1092)
                      . ..++ +.||.+++|-....+          |... -.-|..++++++||.||+.|+ ++.|++|.+||..+ .++.+.
T Consensus       469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~  546 (792)
T KOG1963|consen  469 SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI-GSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCT  546 (792)
T ss_pred             cceeEEeccCCeEEEEEEecccccCcCccceEEeee-eccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhcc
Confidence            3 5555 689999999884322          2111 123689999999999997666 55788999999999 555555


Q ss_pred             eccccccCCCCccCcccceEE-EECCCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 001362         1016 ILSTAYLRPTTSCLHVYPHAI-AAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1067 (1092)
Q Consensus      1016 ~~~~~~~~~~~~~~~v~~~~~-~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~ 1067 (1092)
                      .....+.        +...+. +-.+  ....+.....+.+.+|++......|
T Consensus       547 ~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~l~~WNll~~~l~w  589 (792)
T KOG1963|consen  547 EGSRNWP--------IAELLFTAQTQ--NDGALVHATQQRLSVWNLLSMSLIW  589 (792)
T ss_pred             ccccccc--------hHhHhhhcccc--cccceeeccCceEehHhhhhhheec
Confidence            5422211        111111 1122  2345555677899999999888888

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=5.7e-20  Score=203.13  Aligned_cols=276  Identities=12%  Similarity=0.165  Sum_probs=231.5

Q ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC-CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      ..|...-+.++|.|+|++|++++.||.|++|+.... +...   .+..+...|.+++...  .  .|++|+.+++|.+|.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~s--~--~f~~~s~~~tv~~y~   82 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACYS--N--HFLTGSEQNTVLRYK   82 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeecc--c--ceEEeeccceEEEee
Confidence            368899999999999999999999999999998776 3222   3334777788777643  4  699999999999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      ...++.-..+....-+++.+++  +.+|.+++.|+.|-.|++-++........+.+|..+|.++.|+|++++|++...  
T Consensus        83 fps~~~~~iL~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~--  158 (933)
T KOG1274|consen   83 FPSGEEDTILARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC--  158 (933)
T ss_pred             CCCCCccceeeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence            9988876666667788999999  557789999999999999999999999999999999999999999999999875  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeecccc-----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001362          552 EGESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  626 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  626 (1092)
                        +|.|++||+.++.+..++.+....     ...+..++|+|++..++..+.|+.|.+|+..+......+........+.
T Consensus       159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~  236 (933)
T KOG1274|consen  159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS  236 (933)
T ss_pred             --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence              777999999999888777654311     2345678999999999999999999999999999988887665555588


Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccC
Q 001362          627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN  685 (1092)
Q Consensus       627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  685 (1092)
                      .+.|+|+|+|||+++.+|.|.|||.++..    .......|.+++|.|+...+..-...
T Consensus       237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~----~~~~~~~Vc~~aw~p~~n~it~~~~~  291 (933)
T KOG1274|consen  237 DLQWSPNGKYIAASTLDGQILVWNVDTHE----RHEFKRAVCCEAWKPNANAITLITAL  291 (933)
T ss_pred             EEEEcCCCcEEeeeccCCcEEEEecccch----hccccceeEEEecCCCCCeeEEEeec
Confidence            99999999999999999999999999721    14456678999999887776543333

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=2e-23  Score=213.48  Aligned_cols=287  Identities=13%  Similarity=0.175  Sum_probs=228.9

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      .|.+-|.++++|...+ .+.||+. |-|+|||+.......              +....-.-.....|.++.++|||+.|
T Consensus       417 ~HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~pdgrtL  480 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLLPDGRTL  480 (705)
T ss_pred             ccCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCCCC--------------ccccccccCcccceeeeEecCCCceE
Confidence            4666888899998887 4788876 789999997542111              00000022245789999999999999


Q ss_pred             EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001362          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~  491 (1092)
                      ++|+.-.++.|||+...... ...++..-.-...+++.+||.+  +.++|..||.|.|||+.....++.|+||.+.+.||
T Consensus       481 ivGGeastlsiWDLAapTpr-ikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI  557 (705)
T KOG0639|consen  481 IVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI  557 (705)
T ss_pred             EeccccceeeeeeccCCCcc-hhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence            99999999999999875422 1113333344678899999999  88999999999999999999999999999999999


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001362          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1092)
                      .+  +.||..|.+|+-|.+||.||++.+........ ...|.++.++|.+.++++|-.    ++.+.+.... +.....+
T Consensus       558 di--s~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-kp~kyql  629 (705)
T KOG0639|consen  558 DI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-KPEKYQL  629 (705)
T ss_pred             Ee--cCCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecC-Cccceee
Confidence            98  56889999999999999999998877655443 347889999999999999875    4446665543 3333444


Q ss_pred             eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001362          572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       572 ~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      .-|.   ..|.++.|.+.|+++++.+.|+.+..|...-|..+......   +.|.++..|.|.+++++|+.|....+|.+
T Consensus       630 hlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  630 HLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceEEEEE
Confidence            4444   89999999999999999999999999999988877766543   46899999999999999999988888864

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=4e-23  Score=192.73  Aligned_cols=256  Identities=16%  Similarity=0.217  Sum_probs=205.6

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-  406 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-  406 (1092)
                      ..-.+|.+-|..+...--|++ |||++.|++|+|+.+.++.....                ...|.||.++|..++|.. 
T Consensus         5 ~idt~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~l----------------l~~L~Gh~GPVwqv~wahP   67 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSKL----------------LAELTGHSGPVWKVAWAHP   67 (299)
T ss_pred             ehhhhhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCcee----------------eeEecCCCCCeeEEeeccc
Confidence            344689999999999999984 89999999999999987654211                112899999999999987 


Q ss_pred             -CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC---ceeEEEe
Q 001362          407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFE  482 (1092)
Q Consensus       407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~~  482 (1092)
                       -|.+||+++.||.|.||.-++| ...+..+...|...|++++|.|.+-.+.|++++.||.|.|.+.++.   ...+...
T Consensus        68 k~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~  146 (299)
T KOG1332|consen   68 KFGTILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF  146 (299)
T ss_pred             ccCcEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence             8999999999999999999988 4445556778999999999999988889999999999999987654   2224456


Q ss_pred             cCCcCeEEEeecccCC-c-----------cEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccCC----CEE
Q 001362          483 GHGAPVYSLCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RRL  544 (1092)
Q Consensus       483 ~~~~~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~dg----~~l  544 (1092)
                      .|.-.|+++++.|..- |           +.|++|+.|..|+||+.+...-  ...+..|...|+.+++.|.-    .+|
T Consensus       147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~i  226 (299)
T KOG1332|consen  147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTI  226 (299)
T ss_pred             ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceee
Confidence            7999999999987521 1           5799999999999999988642  23478899999999999964    468


Q ss_pred             EEEecCCCCceeEEEEeCCCC--eEEE-EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001362          545 FSCGTSKEGESFLVEWNESEG--AIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  608 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~--~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~  608 (1092)
                      ++|+.    ++.+.||-....  .... .+....   ..+..+.|++.|+.|+.++.|+.|.+|.-.
T Consensus       227 AS~Sq----Dg~viIwt~~~e~e~wk~tll~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  227 ASCSQ----DGTVIIWTKDEEYEPWKKTLLEEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             EEecC----CCcEEEEEecCccCcccccccccCC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            88876    667999976521  1111 222222   689999999999999999999999999754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=4.4e-23  Score=210.96  Aligned_cols=283  Identities=12%  Similarity=0.171  Sum_probs=224.0

Q ss_pred             cccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001362          732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  811 (1092)
Q Consensus       732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s  811 (1092)
                      .|..-|.++++|...+.+++++. |.|+|||+.....                   ...+...+.  ....+-|+++.+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~-------------------k~PvsqLdc--l~rdnyiRSckL~  474 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN-------------------KSPVSQLDC--LNRDNYIRSCKLL  474 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC-------------------CCccccccc--cCcccceeeeEec
Confidence            37888899999999998877765 5899999865311                   011111111  1256778999999


Q ss_pred             cCCCEEEEEeC-CeEEEEEcCCceee--EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCC
Q 001362          812 KNDAYLFSASG-GVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR  888 (1092)
Q Consensus       812 ~dg~~l~~~sd-g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~  888 (1092)
                      |||+.|++|+. .++.|||+......  ..+........+++.+| |.++.++++.||.|.|||+.+...+..|+||.+.
T Consensus       475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG  553 (705)
T KOG0639|consen  475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG  553 (705)
T ss_pred             CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCC
Confidence            99999999986 78999999765432  33433345678899999 8999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCc
Q 001362          889 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEEL  967 (1092)
Q Consensus       889 V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~  967 (1092)
                      +.||.+++||..|.||+-|.+||-||+..+....     ...    +...|.++..+|.+.+|++| .++.+.|......
T Consensus       554 ascIdis~dGtklWTGGlDntvRcWDlregrqlq-----qhd----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp  624 (705)
T KOG0639|consen  554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ-----QHD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP  624 (705)
T ss_pred             ceeEEecCCCceeecCCCccceeehhhhhhhhhh-----hhh----hhhhheecccCCCccceeeecccCcEEEEecCCc
Confidence            9999999999999999999999999999865222     111    11358999999999999997 5567888877654


Q ss_pred             eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEE
Q 001362          968 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1047 (1092)
Q Consensus       968 ~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~ 1047 (1092)
                      +.-.  +.-|...|.++.|++.|+++++.+.|.-+-.|...-|..+....         -.+.|.++.++++   ..+++
T Consensus       625 ~kyq--lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVlsCDIS~d---dkyIV  690 (705)
T KOG0639|consen  625 EKYQ--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVLSCDISFD---DKYIV  690 (705)
T ss_pred             ccee--ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcceeeeeccC---ceEEE
Confidence            4433  44589999999999999999999999999999999987764433         1455776666665   58999


Q ss_pred             EEeCCCcEEEEeC
Q 001362         1048 VGLTNGEVYVIEP 1060 (1092)
Q Consensus      1048 ~~~~dg~v~~w~~ 1060 (1092)
                      ||+.|..-.||.+
T Consensus       691 TGSGdkkATVYeV  703 (705)
T KOG0639|consen  691 TGSGDKKATVYEV  703 (705)
T ss_pred             ecCCCcceEEEEE
Confidence            9999998888876

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=4.8e-23  Score=210.33  Aligned_cols=264  Identities=17%  Similarity=0.258  Sum_probs=210.5

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CC
Q 001362          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG  408 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg  408 (1092)
                      .-.|.++|+.+.+-|....++|+++..+.|.|||..+-.-.....      +.|   .....|.||...=..++|++ ..
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~------~~~---~Pdl~L~gH~~eg~glsWn~~~~  190 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS------GEC---RPDLRLKGHEKEGYGLSWNRQQE  190 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc------ccC---CCceEEEeecccccccccccccc
Confidence            346888999999999998899999999999999987643222100      000   11224889998888899999 45


Q ss_pred             CEEEEEeCCCEEEEEEccCCCc----ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC--CCceeEEEe
Q 001362          409 SLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFE  482 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~--~~~~~~~~~  482 (1092)
                      -+|++++.|++|++||+.....    +.....+.+|...|..++|++-... ++++++.|+.+.|||++  +.++.+...
T Consensus       191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~  269 (422)
T KOG0264|consen  191 GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVK  269 (422)
T ss_pred             eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCccccc
Confidence            6889999999999999985433    5556678899999999999998776 79999999999999999  566677889


Q ss_pred             cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEE-EEecCCCCceeEEEE
Q 001362          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLF-SCGTSKEGESFLVEW  560 (1092)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~-~~~~~~~~~~~i~iw  560 (1092)
                      +|.++|++++|+|.. +.+||+|+.|++|.+||+++... ...+..|...|..+.|+|....++ +++.    ++.+.+|
T Consensus       270 ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~rl~vW  344 (422)
T KOG0264|consen  270 AHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRRLNVW  344 (422)
T ss_pred             ccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCcEEEE
Confidence            999999999999874 68999999999999999998664 668899999999999999776554 4443    7779999


Q ss_pred             eCCCCeEE-----------EEEeeccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECC
Q 001362          561 NESEGAIK-----------RTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN  608 (1092)
Q Consensus       561 d~~~~~~~-----------~~~~~~~~~~~~v~~~~~~p~~~~l~~-~s~dg~i~iwd~~  608 (1092)
                      |+..-...           ..+-.|..|...|..+.|+|+..++++ .++|+.+.||.+.
T Consensus       345 Dls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  345 DLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             eccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            98642221           122233444589999999999987755 7899999999875

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=5.1e-21  Score=209.97  Aligned_cols=289  Identities=11%  Similarity=0.054  Sum_probs=212.4

Q ss_pred             EEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEEccC
Q 001362          349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHG  427 (1092)
Q Consensus       349 llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~~  427 (1092)
                      ++++++.|+.|.+||+.+++.+..                   +..+ ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~   62 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT   62 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence            788999999999999999887654                   3333 346789999999987 5667889999999998


Q ss_pred             CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEec
Q 001362          428 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV  507 (1092)
Q Consensus       428 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~  507 (1092)
                      ++...   .+..+.. +..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++++  +++.++++++.
T Consensus        63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~--~dg~~l~~~~~  134 (300)
T TIGR03866        63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS--PDGKIVVNTSE  134 (300)
T ss_pred             CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC--CCCCEEEEEec
Confidence            86544   3433433 567899999984 345566789999999999888877753 3345777884  47788888887


Q ss_pred             CC-eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc----cCCceE
Q 001362          508 DG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVS  582 (1092)
Q Consensus       508 dg-~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~  582 (1092)
                      ++ .+.+||..+......... ......++|+|+|+++++++.   .++.|++||..+++.+..+..+..    ......
T Consensus       135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  210 (300)
T TIGR03866       135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV  210 (300)
T ss_pred             CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence            75 467789877655443322 234567899999998876542   256799999999988776653210    011234


Q ss_pred             EEEEcCCCCEEEE-EeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCceeeec
Q 001362          583 VVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAA  660 (1092)
Q Consensus       583 ~~~~~p~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~  660 (1092)
                      .++|+|+++++++ .+.++.+.+||..+++....+...   ..+.+++|+|+|++|+++ ..+|.|.+||..+++.+..+
T Consensus       211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI  287 (300)
T ss_pred             ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            6889999998655 455678999999998887665432   247899999999999886 45899999999999888877


Q ss_pred             ccccCceeeeeec
Q 001362          661 GVLSDNLRKLSVN  673 (1092)
Q Consensus       661 ~~~~~~v~~~~~~  673 (1092)
                      ... ...+.++++
T Consensus       288 ~~~-~~~~~~~~~  299 (300)
T TIGR03866       288 KVG-RLPWGVVVR  299 (300)
T ss_pred             Ecc-cccceeEeC
Confidence            653 333555544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.9e-22  Score=203.83  Aligned_cols=289  Identities=15%  Similarity=0.227  Sum_probs=224.5

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCCC
Q 001362          578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES  654 (1092)
Q Consensus       578 ~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~  654 (1092)
                      .+.|+++.|+|....+++++.|++++||.+...  ..++.+...  ..+|.+.+|.|+|. .+++++....++.||+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            368999999999999999999999999987643  344555443  34688999999998 8888888888889988754


Q ss_pred             ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCcccc
Q 001362          655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA  734 (1092)
Q Consensus       655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~  734 (1092)
                      +.....+                                                                         
T Consensus       291 k~~k~~~-------------------------------------------------------------------------  297 (514)
T KOG2055|consen  291 KVTKLKP-------------------------------------------------------------------------  297 (514)
T ss_pred             ccccccC-------------------------------------------------------------------------
Confidence            2211000                                                                         


Q ss_pred             ccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001362          735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1092)
Q Consensus       735 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg  814 (1092)
                                                                         ..|.           ....+....+||++
T Consensus       298 ---------------------------------------------------~~g~-----------e~~~~e~FeVShd~  315 (514)
T KOG2055|consen  298 ---------------------------------------------------PYGV-----------EEKSMERFEVSHDS  315 (514)
T ss_pred             ---------------------------------------------------CCCc-----------ccchhheeEecCCC
Confidence                                                               0000           12344566778888


Q ss_pred             CEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccC-CeEEE
Q 001362          815 AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-RVTGL  892 (1092)
Q Consensus       815 ~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-~V~~l  892 (1092)
                      ++|+..+ .|.|.+....+++.+..++ -.+.|..++|+. |++.|++.+.+|.|.+||+....++.++....+ .-+++
T Consensus       316 ~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~  393 (514)
T KOG2055|consen  316 NFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSL  393 (514)
T ss_pred             CeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeee
Confidence            8888887 5888888888988888887 567899999998 889999999999999999999999988874222 23568


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCce-eeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE---eCCcEEEEEcCCce
Q 001362          893 VFSDALNILVSSGGDAQIFVWDVDGWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELT  968 (1092)
Q Consensus       893 ~~spdg~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~---~d~~i~lwd~~~~~  968 (1092)
                      +.|++|.+||+||..|.|-|||.++--. ...+++.....-.   ..|+++.|++|+.+||.+   ..+.+++-.+.+..
T Consensus       394 ~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T  470 (514)
T KOG2055|consen  394 CISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT  470 (514)
T ss_pred             eecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence            8889999999999999999999765211 1123344433333   379999999999999984   56789999999888


Q ss_pred             eeeeeccCC--CCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001362          969 CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       969 ~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
                      ....|....  -+.|+|++|||.|.+|+.|..+|.|.+|.+.
T Consensus       471 VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  471 VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            777765443  5789999999999999999999999999874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=9.3e-21  Score=207.85  Aligned_cols=279  Identities=18%  Similarity=0.237  Sum_probs=202.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCceeeecccccCceee
Q 001362          591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK  669 (1092)
Q Consensus       591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~  669 (1092)
                      ..+++++.|+.+++||+.+++.+..+..+.   .+..++|+|+++.+ ++++.++.|++||..+++....+.        
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------   70 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--------   70 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------
Confidence            467888999999999999999888887543   35779999999876 556678899999877542211100        


Q ss_pred             eeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEE
Q 001362          670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI  749 (1092)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  749 (1092)
                                                                                                      
T Consensus        71 --------------------------------------------------------------------------------   70 (300)
T TIGR03866        71 --------------------------------------------------------------------------------   70 (300)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEE
Q 001362          750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISL  827 (1092)
Q Consensus       750 ~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~i  827 (1092)
                                                                         ....+..++++|+++.++++.  ++.+++
T Consensus        71 ---------------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~   99 (300)
T TIGR03866        71 ---------------------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTV   99 (300)
T ss_pred             ---------------------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEE
Confidence                                                               001123456777777665543  578999


Q ss_pred             EEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE-e
Q 001362          828 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-G  905 (1092)
Q Consensus       828 wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~-s  905 (1092)
                      ||+.+.+.+..+.. ...+.+++|+| ++.+++++..++ .+.+||..+++....+.. ...+.+++|+|++++|+.+ .
T Consensus       100 ~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866       100 IDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             EECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence            99988877776653 33467899999 899999888775 567789998877665542 3346789999999988544 4


Q ss_pred             CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE--EeCCcEEEEEcCCceeeeeeccCCCCCEEE
Q 001362          906 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQ  983 (1092)
Q Consensus       906 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~--~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~  983 (1092)
                      .++.|++||+.+++............+.. ......++|+|+++++++  +.++.+.+||..+++.+....  +...+.+
T Consensus       177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~  253 (300)
T TIGR03866       177 IGGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQ  253 (300)
T ss_pred             CCCEEEEEEcCcceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcce
Confidence            69999999999876433211111110100 112457899999998655  456789999999888776543  3457899


Q ss_pred             EEEecCCCEEEEE-ECCCcEEEEEcCCCceEEeec
Q 001362          984 ATFSCDCRMVFTS-FVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       984 l~fs~dg~~l~t~-~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      ++|+|||++|+++ +.+|.|.+||+.+++.+.++.
T Consensus       254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            9999999999886 468999999999999988886

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.5e-22  Score=204.29  Aligned_cols=288  Identities=14%  Similarity=0.215  Sum_probs=232.9

Q ss_pred             CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC-EEE
Q 001362          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLG  412 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~la  412 (1092)
                      .+.|++|.|+|... +|.+|+.|++++||.++........+                 +.-...+|.+.+|.|+|. .++
T Consensus       213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~  274 (514)
T KOG2055|consen  213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIF  274 (514)
T ss_pred             cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEE
Confidence            35999999999997 89999999999999987543222111                 222457999999999999 889


Q ss_pred             EEeCCCEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001362          413 VAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~  491 (1092)
                      +++....++.||+.+.+..+ +..+.++. ..+.....|++++  +|+..|..|.|.+-...+++.+.+++ -.+.|..+
T Consensus       275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~  350 (514)
T KOG2055|consen  275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF  350 (514)
T ss_pred             ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence            99999999999999876543 22344554 3577888999999  89999999999999999999999987 56789999


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC------
Q 001362          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------  564 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~------  564 (1092)
                      +|+  .+++.|++++.+|.|.+||++...+...+...+. .-+++|.+++|.++++|+.    .|.|.|||..+      
T Consensus       351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~  424 (514)
T KOG2055|consen  351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN  424 (514)
T ss_pred             EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence            995  5779999999999999999999988887765544 4578899999999999975    67799999653      


Q ss_pred             CeEEEEEeeccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEeCC-CCCCCCceEEEccCCCEEEEEe
Q 001362          565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIA  641 (1092)
Q Consensus       565 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~  641 (1092)
                      .+++..+....   ..|..++|+++.+.|+.+|  .+..+++-++.+......++.. .....++|++|+|.+.++|+|.
T Consensus       425 PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN  501 (514)
T KOG2055|consen  425 PKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN  501 (514)
T ss_pred             CCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence            34455555444   6899999999999988877  5678999998887766655443 3345689999999999999999


Q ss_pred             CCCeEEEEECC
Q 001362          642 NENRIKILETP  652 (1092)
Q Consensus       642 ~dg~i~iw~~~  652 (1092)
                      .+|.+.+|.+.
T Consensus       502 e~grv~l~kL~  512 (514)
T KOG2055|consen  502 EAGRVHLFKLH  512 (514)
T ss_pred             CCCceeeEeec
Confidence            99999999864

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=6.3e-22  Score=189.42  Aligned_cols=320  Identities=13%  Similarity=0.198  Sum_probs=232.8

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CC
Q 001362          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG  408 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg  408 (1092)
                      .+.|.+.|+.+...|...+++.+|+.||.|.|||++....-...-+ +-+ ..|  .....--.+|+-.|..+.|-| |.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c--~v~~~h~~~Hky~iss~~WyP~Dt  114 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKC--IVAKQHENGHKYAISSAIWYPIDT  114 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eee--eccccCCccceeeeeeeEEeeecC
Confidence            3568889999999987766899999999999999986542110000 000 001  112223567899999999999 77


Q ss_pred             CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCC-cEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001362          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      -.+.+++.|.+++|||..+-+...   .+ ...+.|.+-++||-.. .-++++|..|-.|++-|+.+|..-+++.||.+.
T Consensus       115 GmFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~  190 (397)
T KOG4283|consen  115 GMFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG  190 (397)
T ss_pred             ceeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence            788899999999999999864332   33 2456788888888543 326788888899999999999999999999999


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001362          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1092)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1092)
                      |.++.|+|..+ -.|++|+.||.|++||++..                                  .+..++.|..+++.
T Consensus       191 vlaV~Wsp~~e-~vLatgsaDg~irlWDiRra----------------------------------sgcf~~lD~hn~k~  235 (397)
T KOG4283|consen  191 VLAVEWSPSSE-WVLATGSADGAIRLWDIRRA----------------------------------SGCFRVLDQHNTKR  235 (397)
T ss_pred             eEEEEeccCce-eEEEecCCCceEEEEEeecc----------------------------------cceeEEeecccCcc
Confidence            99999998754 68999999999999998742                                  11234444444333


Q ss_pred             EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC----CCCCCCceEEEccCCCEEEEEeCC
Q 001362          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----GGLPENPRICFNKNGTLLAVIANE  643 (1092)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~d  643 (1092)
                      ...++....|.+.|..++|+.++.++++++.|..+++|+..+|+....-.++    .....-..+. +.+...++.--.+
T Consensus       236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~  314 (397)
T KOG4283|consen  236 PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPND  314 (397)
T ss_pred             CccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecC
Confidence            3333333334589999999999999999999999999999988653322111    0000001122 3344556656667


Q ss_pred             CeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecc
Q 001362          644 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP  715 (1092)
Q Consensus       644 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~  715 (1092)
                      +.+.++++-.+..+..+..|...+.|.++.                      |+-+...++..|+.+..|-.
T Consensus       315 ~~lall~~~sgs~ir~l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  315 GSLALLNLLEGSFVRRLSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             CeEEEEEccCceEEEeeecccceeeEEeec----------------------CchhhhhccccCCccccccc
Confidence            999999999999999999998888887775                      56667778888888888874

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.9e-22  Score=192.83  Aligned_cols=300  Identities=14%  Similarity=0.188  Sum_probs=223.1

Q ss_pred             CCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE
Q 001362          321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  400 (1092)
Q Consensus       321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~  400 (1092)
                      ..|.....+|....  ..|+.||+.|. +||+|..||.|.|||+.|-..-+.                   +.+|..+|+
T Consensus        12 ~~PEel~~tld~~~--a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~   69 (405)
T KOG1273|consen   12 EYPEELTHTLDNPL--AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPIT   69 (405)
T ss_pred             cChHhhceeccCCc--cceEEeccCcc-eeeeeccCCcEEEEEccccchhhh-------------------hhcccccee
Confidence            45667777776443  78999999998 799999999999999998764443                   888999999


Q ss_pred             EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001362          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      +++||+||+.|+++|.|..|.+||+..|.+++++    ....+|+.+.|.|-..+..++ +-.+..-.+-++..+.....
T Consensus        70 sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h~~L  144 (405)
T KOG1273|consen   70 SLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKHSVL  144 (405)
T ss_pred             EEEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEE-EEecCCcEEEEecCCceeec
Confidence            9999999999999999999999999999877643    256789999999987763444 33344455555544322111


Q ss_pred             EecCCcCeEEE--eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeE
Q 001362          481 FEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       481 ~~~~~~~v~~~--~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                      -....+..+..  +-..++.|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|++++..+.    +..|
T Consensus       145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvI  220 (405)
T KOG1273|consen  145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVI  220 (405)
T ss_pred             cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceE
Confidence            11111111111  11135577899999999999999999998888776665 68999999999999999876    7779


Q ss_pred             EEEeCCCC-------eE--EEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001362          558 VEWNESEG-------AI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       558 ~iwd~~~~-------~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                      +.|+.+.-       +.  .+.++..- ..-.-.+++|+.+|.++++++ ....++||....|.+++.+.+..+ .....
T Consensus       221 R~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~D  298 (405)
T KOG1273|consen  221 RTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLD  298 (405)
T ss_pred             EEEehhhhcccCccCCcChhHHHHHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheee
Confidence            99987521       11  11111111 123346789999999998876 456799999999999999987654 35678


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCC
Q 001362          628 ICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      +.|+|-...+++. ..|.++||.....
T Consensus       299 V~whp~rp~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  299 VNWHPVRPIIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             cccccceeeeeec-cCCceEEEEeecc
Confidence            8999988777777 6799999987643

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.1e-22  Score=204.44  Aligned_cols=294  Identities=15%  Similarity=0.204  Sum_probs=230.9

Q ss_pred             EEEEEcCCC-cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCC-CCcEEEEEECCCCCEEEEEeC-CCEEEEEEc
Q 001362          349 LLLVGTNVG-DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAY  425 (1092)
Q Consensus       349 llasg~~d~-~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h-~~~V~~l~~spdg~~las~~~-d~~i~iwd~  425 (1092)
                      ++.+++.|. ++.+||+.+|....++                   ++. ...-.++..- .+.|++++.. ...+.+|.+
T Consensus         9 ~~sssS~d~~~~~~~dl~TGt~~~~y-------------------kg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i   68 (476)
T KOG0646|consen    9 VCSSSSFDPINCIVWDLRTGTSLLQY-------------------KGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEI   68 (476)
T ss_pred             EEeccCCCCcceeEEecCCCceeEEe-------------------cCcccccchhhhhh-chhheeeecccCcccccccc
Confidence            344555554 4999999999877542                   111 0011111110 2467777743 457999999


Q ss_pred             cCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEE
Q 001362          426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI  505 (1092)
Q Consensus       426 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  505 (1092)
                      .......+..   --.++|.+++-+|+|.  +|+.|+..+.|++|.+.+|..+..+.+|-..|+++.|  +.||.+|++|
T Consensus        69 ~k~~~~~q~~---v~Pg~v~al~s~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f--s~dgs~iiTg  141 (476)
T KOG0646|consen   69 LKKDQVVQYI---VLPGPVHALASSNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF--SDDGSHIITG  141 (476)
T ss_pred             Cchhhhhhhc---ccccceeeeecCCCce--EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE--eCCCcEEEec
Confidence            8655444221   2456899999999998  7888879999999999999999999999999999999  5688999999


Q ss_pred             ecCCeEEEEEcC---------CCCceEEecCCCCceEEEEEccC--CCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001362          506 SVDGKIKAWLYD---------SLGARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  574 (1092)
Q Consensus       506 ~~dg~i~vwd~~---------~~~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  574 (1092)
                      +.||.|.+|++.         +..+...+..|.-+|+.+...+.  ..++++++.    |.++++||+..|.++.++...
T Consensus       142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~LLlti~fp  217 (476)
T KOG0646|consen  142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGVLLLTITFP  217 (476)
T ss_pred             CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC----CceEEEEEeccceeeEEEecC
Confidence            999999999763         33456678888889999888765  457888876    778999999999998888764


Q ss_pred             cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------------ceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001362          575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----------------QLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       575 ~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~  638 (1092)
                          ..+.+++.+|.+..+++|+.+|.|.+.++..-                ..+..+.+|.....|+|++.+-||.+|+
T Consensus       218 ----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl  293 (476)
T KOG0646|consen  218 ----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL  293 (476)
T ss_pred             ----CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence                48999999999999999999999998876542                2334455555545899999999999999


Q ss_pred             EEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCc
Q 001362          639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST  677 (1092)
Q Consensus       639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~  677 (1092)
                      +|+.||.+.|||..+.++++++....++|+.+.+.|...
T Consensus       294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             eeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence            999999999999999999999888889999999876533

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.4e-21  Score=189.41  Aligned_cols=270  Identities=14%  Similarity=0.116  Sum_probs=210.9

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001362          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  474 (1092)
                      ....|+++.|+|.+..|++++.||.+++||+...+...   .+ .|..++.+++|.++.+   +++|+.||.|+.+|+.+
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~---~~-~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~   84 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL---KF-KHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT   84 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh---he-ecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence            57899999999999999999999999999999875433   22 5899999999998765   89999999999999999


Q ss_pred             CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001362          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      +.... +..|..+|.++...+..  ..+++|+.|++|++||.+.......+...+ .|.++..  .|..|++++.    +
T Consensus        85 ~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~  154 (323)
T KOG1036|consen   85 GNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----D  154 (323)
T ss_pred             Cccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----C
Confidence            87654 44699999999987543  479999999999999998754444444433 6666554  5677888765    5


Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEeCCCC-------CC
Q 001362          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------LP  623 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~  623 (1092)
                      ..+.+||+++........... -...+.++++.|++.-+++++-||.|.+=.++..    +....+..|..       .-
T Consensus       155 r~v~iyDLRn~~~~~q~reS~-lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y  233 (323)
T KOG1036|consen  155 RKVLIYDLRNLDEPFQRRESS-LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY  233 (323)
T ss_pred             ceEEEEEcccccchhhhcccc-ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence            569999998765543221111 1357899999999888999999999988555544    23333443321       13


Q ss_pred             CCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccccc
Q 001362          624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG  682 (1092)
Q Consensus       624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  682 (1092)
                      +|++++|+|-...|++|+.||.|.+||..+.+.+..+......|..++|+.++..++++
T Consensus       234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia  292 (323)
T KOG1036|consen  234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA  292 (323)
T ss_pred             EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence            58899999999999999999999999999999999998888889999998665555443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=7.1e-22  Score=191.02  Aligned_cols=266  Identities=15%  Similarity=0.234  Sum_probs=205.6

Q ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001362          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      -.|+.||+.|.+||+|+.||.|.|||+.|...-+   .+.+|..+|++++||+||+  .|+|++.|..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence            7899999999999999999999999999876444   5789999999999999999  8999999999999999999999


Q ss_pred             EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC----ceEEEEEccCCCEEEEEecCCCCc
Q 001362          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      +.+. ...+|..+.|+|......+++--.. .-.+-++........-....+    ...+..|.+.|+++++|..    .
T Consensus       101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~-sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K  174 (405)
T KOG1273|consen  101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEE-SPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K  174 (405)
T ss_pred             eEEE-ccCccceeeeccccCCeEEEEEecC-CcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence            9987 7889999999998776655554433 344455554222221111111    1223468899999999975    7


Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------eE--EEEeCCCCCCCC
Q 001362          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ-------LL--TTIDAGGGLPEN  625 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~-------~~--~~~~~~~~~~~v  625 (1092)
                      |.+.++|..+.+++..++-..  ...|..+-++..|..++.-+.|..||.|+...-.       .-  +.+..--....-
T Consensus       175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W  252 (405)
T KOG1273|consen  175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW  252 (405)
T ss_pred             ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence            779999999999988887654  4678999999999999999999999999876311       10  111100011234


Q ss_pred             ceEEEccCCCEEEEEeC-CCeEEEEECCCCceeeeccccc-CceeeeeecCCCc
Q 001362          626 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPIST  677 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~  677 (1092)
                      .+++|+.+|.+++.++. ...++||....|..++.+.|.. .....+.+.|...
T Consensus       253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp  306 (405)
T KOG1273|consen  253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRP  306 (405)
T ss_pred             hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccccee
Confidence            68999999999988875 5789999999999999999887 5666777775443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=8.9e-21  Score=200.42  Aligned_cols=450  Identities=14%  Similarity=0.142  Sum_probs=289.7

Q ss_pred             ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce
Q 001362          443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR  522 (1092)
Q Consensus       443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  522 (1092)
                      .|..++|-|||.+++++.   +..+.+||...|..++++++|.+.|+++++  +.||+.+++|+.|+.|.+|.-..... 
T Consensus        14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~-   87 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGI-   87 (1081)
T ss_pred             chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEE--ccCCceeccCCCceeEEEecccccce-
Confidence            799999999999744443   347999999999999999999999999999  56889999999999999996543222 


Q ss_pred             EEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcE
Q 001362          523 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI  602 (1092)
Q Consensus       523 ~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i  602 (1092)
                       .--.|...|.++.|+|-...|++|+-+.     .-+|........+ .+.    ...+.+++|..||++++.|-.+|+|
T Consensus        88 -LkYSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~K-~ks----s~R~~~CsWtnDGqylalG~~nGTI  156 (1081)
T KOG1538|consen   88 -LKYSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVSK-HKS----SSRIICCSWTNDGQYLALGMFNGTI  156 (1081)
T ss_pred             -eeeccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHHh-hhh----heeEEEeeecCCCcEEEEeccCceE
Confidence             2234777899999999999999998532     6678765443322 111    2468899999999999999999999


Q ss_pred             EEEECCCCceEEEEeCCCCCCCCceEEEccCC-----CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCc
Q 001362          603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-----TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST  677 (1092)
Q Consensus       603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~  677 (1092)
                      .+-+.........-...+...+|.+++|+|..     ..+++.....++.++.+.. +.+..-+...-.-.|+.+     
T Consensus       157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisY-----  230 (1081)
T KOG1538|consen  157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISY-----  230 (1081)
T ss_pred             EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCCchhhee-----
Confidence            99875444434333334456789999999953     4677777777777777653 233222222222223333     


Q ss_pred             cccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCe
Q 001362          678 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV  757 (1092)
Q Consensus       678 ~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~  757 (1092)
                                       -++|.+++.|+.|+.+.+|..+.-..+   .  .  ......|..++..|+++.++.|..||+
T Consensus       231 -----------------f~NGEy~LiGGsdk~L~~fTR~GvrLG---T--v--g~~D~WIWtV~~~PNsQ~v~~GCqDGT  286 (1081)
T KOG1538|consen  231 -----------------FTNGEYILLGGSDKQLSLFTRDGVRLG---T--V--GEQDSWIWTVQAKPNSQYVVVGCQDGT  286 (1081)
T ss_pred             -----------------ccCCcEEEEccCCCceEEEeecCeEEe---e--c--cccceeEEEEEEccCCceEEEEEccCe
Confidence                             378999999999999998874411111   0  0  114568999999999999999999999


Q ss_pred             eEEEeecCCCcCc---------------------Ccc---------------------cccccCCccccCCCCCceeeec
Q 001362          758 HLMWRWPRNDLTL---------------------STE---------------------ATTKVPPRLYQPRHGPQFMVND  795 (1092)
Q Consensus       758 i~lw~~~~~~~~~---------------------~~~---------------------~~~~~~~~~w~~~~g~~~~~~~  795 (1092)
                      +-.|++-....+.                     .+.                     .+....+.+|...++. .....
T Consensus       287 iACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~-~~~mh  365 (1081)
T KOG1538|consen  287 IACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSED-LSDMH  365 (1081)
T ss_pred             eehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccc-cccch
Confidence            9999876543200                     000                     0000111222222211 00000


Q ss_pred             CCCCC-CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee--------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001362          796 TTDSN-SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS  866 (1092)
Q Consensus       796 l~~~~-~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~--------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg  866 (1092)
                      .+-+. -.....|--+--.++.++.+.+..+..+|...-+.        ++-++...        .|.+..-|+.|..||
T Consensus       366 Y~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~G--------GP~gREgL~vGlknG  437 (1081)
T KOG1538|consen  366 YRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIG--------GPPGREGLLVGLKNG  437 (1081)
T ss_pred             hHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhc--------CCCCcceeEEEecCC
Confidence            00000 00000111111133455555566677777653211        11111111        122566788899998


Q ss_pred             cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEec
Q 001362          867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK  946 (1092)
Q Consensus       867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  946 (1092)
                      .|.-.=+++.-++.... ....|.|+..+...+.||+..+.++..++|+.+++.    .++.+        .+.+++|+.
T Consensus       438 qV~kiF~dN~~PiLl~~-~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp--------g~nSV~wNT  504 (1081)
T KOG1538|consen  438 QVLKIFVDNLFPILLLK-QATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP--------GANSVAWNT  504 (1081)
T ss_pred             cEEEEEecCCchhheec-ccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC--------CCceEEeec
Confidence            77544355443333333 456799999999999999999999999999999763    22332        477899988


Q ss_pred             CCCEEEE-EeCCcEEE
Q 001362          947 DQTRFLL-VHETHLAI  961 (1092)
Q Consensus       947 dg~~la~-~~d~~i~l  961 (1092)
                      ...-+.+ +..|.+.|
T Consensus       505 ~~E~MlcfT~~g~L~V  520 (1081)
T KOG1538|consen  505 QCEDMLCFTGGGYLNV  520 (1081)
T ss_pred             cccceEEEecCCceEE
Confidence            7655544 55565544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=4e-21  Score=184.00  Aligned_cols=305  Identities=14%  Similarity=0.180  Sum_probs=217.3

Q ss_pred             cccccEEEEEEec-CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001362          732 VKANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  810 (1092)
Q Consensus       732 ~~~~~i~~l~~s~-~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~  810 (1092)
                      .|.+.|+++.+.+ .|+++++++.||.+.+||++............          ...|+... -...+|...|..+.|
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~----------k~~c~v~~-~h~~~Hky~iss~~W  109 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA----------KHKCIVAK-QHENGHKYAISSAIW  109 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee----------heeeeccc-cCCccceeeeeeeEE
Confidence            4889999999877 68999999999999999998654211111110          01111111 112258899999999


Q ss_pred             ecCC-CEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC--CCCEEEEEeCCCcEEEEEcCCceeeEeecccc
Q 001362          811 SKND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHS  886 (1092)
Q Consensus       811 s~dg-~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~  886 (1092)
                      -|-. ..+.+++ |.++++||..+.+....|. -.+.|.+-++||-  ...++|+|..|-.|++.|+.+|.....+.||.
T Consensus       110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr  188 (397)
T KOG4283|consen  110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR  188 (397)
T ss_pred             eeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence            8844 4445555 8999999999998888876 4567777777772  13488999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCc--eee-----eeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCC
Q 001362          887 KRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWG--IQT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET  957 (1092)
Q Consensus       887 ~~V~~l~~spdg~~-l~s~s~Dg~i~iwd~~~~~--~~~-----~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~  957 (1092)
                      +.|.++.|||...+ |++|+.||.|++||+....  ...     .+..+..+....+.+.+..++|+.||.++++ +.|.
T Consensus       189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~  268 (397)
T KOG4283|consen  189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD  268 (397)
T ss_pred             CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence            99999999998765 7899999999999997531  000     0111111112223358999999999999998 8999


Q ss_pred             cEEEEEcCCceeeeeecc--CCCC---CEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCccc
Q 001362          958 HLAIYEAEELTCLKQWFP--ISSV---PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1032 (1092)
Q Consensus       958 ~i~lwd~~~~~~~~~~~~--~h~~---~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1032 (1092)
                      .+++|+..+|+....-+.  .|+.   .-..+. +.+...++---.|+++.++++-.|..+.++..        |...+ 
T Consensus       269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~--------h~k~i-  338 (397)
T KOG4283|consen  269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST--------HLKRI-  338 (397)
T ss_pred             ceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec--------cccee-
Confidence            999999988764322111  1211   111123 44444555555678999999999999888872        22222 


Q ss_pred             ceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001362         1033 PHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus      1033 ~~~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
                       .|.++.| +=+...+|..|+.+..|-.
T Consensus       339 -~c~~~~~-~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  339 -NCAAYRP-DFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             -eEEeecC-chhhhhccccCCccccccc
Confidence             3667777 4577999999999999987

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.3e-21  Score=199.95  Aligned_cols=225  Identities=16%  Similarity=0.177  Sum_probs=190.7

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC--
Q 001362          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--  473 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~--  473 (1092)
                      .++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+.   .+.+|-..|+|+.|+.||.  +++|||.||.|.+|++.  
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l  155 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL  155 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence            3589999999999999999999999999999998877   5679999999999999999  89999999999999753  


Q ss_pred             -------CCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001362          474 -------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  546 (1092)
Q Consensus       474 -------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1092)
                             +-++++.|..|.-+|+++...+.+-..+|+|+|.|.++++||+..+..+..+..+ ..+.+++.+|-++.+++
T Consensus       156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yi  234 (476)
T KOG0646|consen  156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYI  234 (476)
T ss_pred             cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEe
Confidence                   3467889999999999999877766689999999999999999998777766544 47899999999999999


Q ss_pred             EecCCCCceeEEEEeCCC----------------CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001362          547 CGTSKEGESFLVEWNESE----------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  610 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~----------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~  610 (1092)
                      |+.    ++.|.+.++..                +..+..+.||. ....|+|++++-||..|++|+.||.|+|||+.+.
T Consensus       235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~-~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE-NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             cCC----cceEEeeehhcCCcccccccccccccccceeeeecccc-CCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence            976    55577665432                23456677777 1138999999999999999999999999999999


Q ss_pred             ceEEEEeCCCCCCCCceEEEccC
Q 001362          611 QLLTTIDAGGGLPENPRICFNKN  633 (1092)
Q Consensus       611 ~~~~~~~~~~~~~~v~~v~~s~~  633 (1092)
                      ++++++...  ..+|+.+.+.|-
T Consensus       310 Q~iRtl~~~--kgpVtnL~i~~~  330 (476)
T KOG0646|consen  310 QCIRTLQTS--KGPVTNLQINPL  330 (476)
T ss_pred             HHHHHHhhh--ccccceeEeecc
Confidence            999888732  345888887663

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=2e-21  Score=197.74  Aligned_cols=305  Identities=17%  Similarity=0.195  Sum_probs=228.9

Q ss_pred             ceeeecccCCCCceEEeecCCCc-eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~-~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ......+-|.+.|++++|+|... .++|+|+..|.|-+||+.+.+......               .++..|..+|.++.
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~  241 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLK  241 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceE
Confidence            34455667888999999999886 799999999999999997544333211               12778999999999


Q ss_pred             ECC-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-eEEE
Q 001362          404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSF  481 (1092)
Q Consensus       404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~  481 (1092)
                      |+| +-..+++.|.||+|++-|++++.. .....+..-...+..+.|+.+..  .++.+..=|...+||.+++.. ...+
T Consensus       242 F~P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~  318 (498)
T KOG4328|consen  242 FSPANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENL  318 (498)
T ss_pred             ecCCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhh
Confidence            999 567888999999999999997642 22223333445678889998888  677787778999999998765 5666


Q ss_pred             ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce----EEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001362          482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                      .-|...|.+++++|-.. .++++++.|++.+|||++.....    .....|...|.+..|||.+-.|++.+.    +..|
T Consensus       319 ~lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~I  393 (498)
T KOG4328|consen  319 RLHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEI  393 (498)
T ss_pred             hhhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCce
Confidence            77999999999998754 79999999999999999865433    345667889999999998888888765    6679


Q ss_pred             EEEeCC----CCeEEEEEeeccccCC--ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001362          558 VEWNES----EGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       558 ~iwd~~----~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                      ++||..    .-....++.....+..  ......|.|+..++++|-.-..|-|+|-..++.+..+..+.......-..|+
T Consensus       394 Rv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H  473 (498)
T KOG4328|consen  394 RVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFH  473 (498)
T ss_pred             EEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeec
Confidence            999983    2233333332221112  2334679999999999999999999999999988776554332222345799


Q ss_pred             cCCCEE-EEEeCCCeEEEEECC
Q 001362          632 KNGTLL-AVIANENRIKILETP  652 (1092)
Q Consensus       632 ~~~~~l-~~~~~dg~i~iw~~~  652 (1092)
                      |-+..+ +.++..|.|+||..+
T Consensus       474 P~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  474 PMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             ccccceeccCCccceEEEEecC
Confidence            987744 445557889988654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=6.7e-20  Score=193.88  Aligned_cols=273  Identities=13%  Similarity=0.148  Sum_probs=203.0

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      .|..++|-|||..++..++  ..+.|||++.|..+.+                   +++|.+.|.|+|||.||+++|+|+
T Consensus        14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~   72 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS   72 (1081)
T ss_pred             chheeEECCCCceEEEecC--CEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence            8999999999987666544  6899999999998876                   889999999999999999999999


Q ss_pred             CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001362          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  495 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  495 (1092)
                      .|..|.+|+..-...++     ..|...|.|+.|+|-..  .|+||+-. ..-+|..+.....    .|...+..++.+.
T Consensus        73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~----K~kss~R~~~CsW  140 (1081)
T KOG1538|consen   73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS----KHKSSSRIICCSW  140 (1081)
T ss_pred             CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH----hhhhheeEEEeee
Confidence            99999999976533232     26999999999999988  68888754 5678986554332    2333333334344


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEEEccCCC-----EEEEEecCCCCceeEEEEeCCCCeE
Q 001362          496 KENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGR-----RLFSCGTSKEGESFLVEWNESEGAI  567 (1092)
Q Consensus       496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~dg~-----~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1092)
                      +.||++++.|-.+|+|.+-+-. +++...+.   +...+|.+++|+|...     .+++.-.    ..++..+.+ +|+.
T Consensus       141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~L-sG~~  214 (1081)
T KOG1538|consen  141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQL-SGKQ  214 (1081)
T ss_pred             cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEe-ccee
Confidence            7899999999999999987533 33333333   3556899999999642     2333221    222333333 3444


Q ss_pred             EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001362          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1092)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  647 (1092)
                      +..-....   -...|+.+.++|.+++.|+.|+.+.+|-. .|-.+.++...  ...|..++..|++++++.|+.||+|.
T Consensus       215 Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiA  288 (1081)
T KOG1538|consen  215 IGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIA  288 (1081)
T ss_pred             ecccccCC---CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeee
Confidence            43322222   34578889999999999999999999974 55666666543  34699999999999999999999999


Q ss_pred             EEECCC
Q 001362          648 ILETPE  653 (1092)
Q Consensus       648 iw~~~~  653 (1092)
                      .|++..
T Consensus       289 CyNl~f  294 (1081)
T KOG1538|consen  289 CYNLIF  294 (1081)
T ss_pred             hhhhHH
Confidence            998763

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=2.5e-21  Score=202.98  Aligned_cols=323  Identities=12%  Similarity=0.168  Sum_probs=245.8

Q ss_pred             ccccCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC
Q 001362          317 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG  396 (1092)
Q Consensus       317 ~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~  396 (1092)
                      .....+|..|...+.||++.|.|+...|.|. +||+|+.||+|+||.+.||.++++..+                    .
T Consensus       383 ~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~--------------------d  441 (733)
T KOG0650|consen  383 KDLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQF--------------------D  441 (733)
T ss_pred             hhcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEee--------------------c
Confidence            3445667788899999999999999999998 699999999999999999999986432                    3


Q ss_pred             CcEEEEEECCCCC--EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEE----EeCCCcEEEE
Q 001362          397 VSVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT----CGDDKTIKVW  470 (1092)
Q Consensus       397 ~~V~~l~~spdg~--~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s----~~~d~~i~vw  470 (1092)
                      +.|.|++|+|.+.  .||++-... +.|-+..-|..+..     +.+           ..  .|.+    ...|+.+..|
T Consensus       442 ~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~-----~~t-----------~e--ll~~~~~~~~p~~~~~~W  502 (733)
T KOG0650|consen  442 SEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEV-----GPT-----------KE--LLASAPNESEPDAAVVTW  502 (733)
T ss_pred             ceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhh-----cch-----------hh--hhhcCCCccCCcccceee
Confidence            5899999999664  455554444 66666655532221     000           00  1221    1335677888


Q ss_pred             ECCCC----ceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001362          471 DAVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  543 (1092)
Q Consensus       471 d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~  543 (1092)
                      .-...    .-++..-.|...|..+.|+.  .|.+|++...+   ..|.|.++........+....+.+.++.|+|...+
T Consensus       503 ~~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~  580 (733)
T KOG0650|consen  503 SRASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPY  580 (733)
T ss_pred             chhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCce
Confidence            64421    12345556999999999965  66799988664   45889999887777777777888999999999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeCCCCC
Q 001362          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGL  622 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~  622 (1092)
                      |++++     ...|++||+..+++++.+....   ..|..++.+|.|..|+.|+.|+.+..+|+.-. +..+++..|.  
T Consensus       581 lfVaT-----q~~vRiYdL~kqelvKkL~tg~---kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~--  650 (733)
T KOG0650|consen  581 LFVAT-----QRSVRIYDLSKQELVKKLLTGS---KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE--  650 (733)
T ss_pred             EEEEe-----ccceEEEehhHHHHHHHHhcCC---eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh--
Confidence            99887     4559999999888877776655   68999999999999999999999999999854 4556666553  


Q ss_pred             CCCceEEEccCCCEEEEEeCCCeEEEEECC------CC---ceeeecccccCc----eeeeeecCCCccccccccCCcee
Q 001362          623 PENPRICFNKNGTLLAVIANENRIKILETP------ES---NSVDAAGVLSDN----LRKLSVNPISTVTGAGIANGSVS  689 (1092)
Q Consensus       623 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~------~~---~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~  689 (1092)
                      ..+.+|+|++.-.++++|+.||++.|+...      .+   -++..+++|...    |....|+                
T Consensus       651 ~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH----------------  714 (733)
T KOG0650|consen  651 KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH----------------  714 (733)
T ss_pred             hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc----------------
Confidence            468999999999999999999999998532      11   345566777655    5555565                


Q ss_pred             ecCCCCCCCccceeecccccccee
Q 001362          690 VNEDPKEDVKPEISVEAENKSEVE  713 (1092)
Q Consensus       690 ~~~~~s~d~~~l~s~~~d~~i~lw  713 (1092)
                            |...++++++.||+|++|
T Consensus       715 ------P~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  715 ------PRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ------CCCceEEecCCCceEEee
Confidence                  667889999999999998

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.88  E-value=2.7e-21  Score=197.67  Aligned_cols=253  Identities=19%  Similarity=0.319  Sum_probs=202.3

Q ss_pred             ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCcc-------cceEEEcccccceeEEEEecCCCcEEEEEEeC
Q 001362          392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA-------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD  463 (1092)
Q Consensus       392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~  463 (1092)
                      ...|.+.|+.+.+-|. ...+|+.+..+.|.|||...-...       +....+.+|...-..++|++.... .|++++.
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~  198 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD  198 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence            4459999999999995 556677788899999999754322       223368899998888999998776 7999999


Q ss_pred             CCcEEEEECCCCc-------eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC--CCCceEEecCCCCceEE
Q 001362          464 DKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--SLGARVDYDAPGLGCTR  534 (1092)
Q Consensus       464 d~~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~  534 (1092)
                      |++|++||+....       ....+.+|...|..++|++... .++.+++.|+.+.|||.+  +.+.......|..++.+
T Consensus       199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~  277 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC  277 (422)
T ss_pred             CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence            9999999987543       2467789999999999998754 689999999999999999  55566678889999999


Q ss_pred             EEEccCCCE-EEEEecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc
Q 001362          535 MAYSANGRR-LFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       535 ~~~s~dg~~-l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~s~dg~i~iwd~~~~~  611 (1092)
                      ++|+|-+.+ ||+++.    +++|.+||+++. +.+.++.+|.   ..|..+.|+|.. ..+++++.|+.+.+||+..-.
T Consensus       278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig  350 (422)
T KOG0264|consen  278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG  350 (422)
T ss_pred             EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence            999996655 555554    677999999865 4567788887   999999999986 456778899999999986422


Q ss_pred             eE------------EEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCC
Q 001362          612 LL------------TTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPE  653 (1092)
Q Consensus       612 ~~------------~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~  653 (1092)
                      ..            ..+...++...|..+.|+|+.. .++++++|+.+.||....
T Consensus       351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            21            2244456677899999999766 567788899999999774

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=1.1e-22  Score=217.74  Aligned_cols=236  Identities=17%  Similarity=0.287  Sum_probs=212.8

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      ...|...|.++..-..++.+++|+.|..+-+|.+.....+.   .+.+|..+|.++.|+++..  +|++|+.+|+|++||
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD   98 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence            44588999999987789999999999999999987654444   5889999999999999988  899999999999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      ++.++.++++.+|...+.++.|+|  -+.+.++|+.|+.+++||.+...+...+.+|...+..+.|+|+|++++.++.  
T Consensus        99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e--  174 (825)
T KOG0267|consen   99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE--  174 (825)
T ss_pred             hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence            999999999999999999999966  5579999999999999999999999999999999999999999999999875  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001362          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                        +..+.+||...|+....|.+|.   +.+.++.|+|..-.+..|+.|+++++||+++.+.+......  ...|.+.+|+
T Consensus       175 --d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn  247 (825)
T KOG0267|consen  175 --DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFN  247 (825)
T ss_pred             --cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeec
Confidence              6779999999999999999998   89999999999888889999999999999998888776654  4569999999


Q ss_pred             cCCCEEEEEeCC
Q 001362          632 KNGTLLAVIANE  643 (1092)
Q Consensus       632 ~~~~~l~~~~~d  643 (1092)
                      |++..+.+|...
T Consensus       248 ~~~~~~~~G~q~  259 (825)
T KOG0267|consen  248 PDGKIVLSGEQI  259 (825)
T ss_pred             CCceeeecCchh
Confidence            999998888664

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=1.4e-20  Score=197.43  Aligned_cols=319  Identities=15%  Similarity=0.238  Sum_probs=236.7

Q ss_pred             EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC--EEEEEeCCCe
Q 001362          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAVIANENR  645 (1092)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~  645 (1092)
                      -..+.||.   +.|.++...|.|.+|++|+.||+|+||.+.+|.++.++...+   .|.+++|+|.+.  .||++..+ .
T Consensus       393 ~lvyrGHt---g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~-~  465 (733)
T KOG0650|consen  393 ALVYRGHT---GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGE-C  465 (733)
T ss_pred             eeeEeccC---CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecC-c
Confidence            34567777   999999999999999999999999999999999999998764   489999999665  45555444 3


Q ss_pred             EEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceee----ccccccceeccccccCc
Q 001362          646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV----EAENKSEVEKPLFARPS  721 (1092)
Q Consensus       646 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~----~~d~~i~lw~~~~~~~~  721 (1092)
                      +.|.+..-+..+..-                                   +....++++    ..+..+-.|.-...+..
T Consensus       466 ~~ivnp~~G~~~e~~-----------------------------------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~  510 (733)
T KOG0650|consen  466 VLIVNPIFGDRLEVG-----------------------------------PTKELLASAPNESEPDAAVVTWSRASLDEL  510 (733)
T ss_pred             eEEeCccccchhhhc-----------------------------------chhhhhhcCCCccCCcccceeechhhhhhh
Confidence            555554433111110                                   000111111    12234556654322211


Q ss_pred             c---ccccccCCccccccEEEEEEecCCcEEEEeecC---CeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeec
Q 001362          722 E---CQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND  795 (1092)
Q Consensus       722 ~---~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~  795 (1092)
                      +   |..+     .|...|..+.|...|.+|++...+   ..+.|+++.....                      ...+.
T Consensus       511 ~~~v~~~I-----~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s----------------------Q~PF~  563 (733)
T KOG0650|consen  511 EKGVCIVI-----KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS----------------------QSPFR  563 (733)
T ss_pred             ccceEEEE-----ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc----------------------cCchh
Confidence            1   2222     278899999999999999988764   4566666544321                      11111


Q ss_pred             CCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC
Q 001362          796 TTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS  875 (1092)
Q Consensus       796 l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~  875 (1092)
                          -..+.|.++.|+|...++++++...|+|||+...+.+..+......|..++++| .|.-|+.|+.|+.+..||+.-
T Consensus       564 ----kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldl  638 (733)
T KOG0650|consen  564 ----KSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDL  638 (733)
T ss_pred             ----hcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEccc
Confidence                156778999999999999999999999999999888888888888999999999 888889999999999999985


Q ss_pred             c-eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEc------CCCceeeeeeeecCCCCcCC-CCCceEEEEecC
Q 001362          876 S-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV------DGWGIQTCRSLQTPDGVMTL-APSETHIQFHKD  947 (1092)
Q Consensus       876 ~-~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~------~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~s~d  947 (1092)
                      + ++.+++.-|...|++++|++.-.++++|+.||++.|+--      -.+.  ...+++.+.+|... ...|..+.|+|.
T Consensus       639 sskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnp--liVPlK~L~gH~~~~~~gVLd~~wHP~  716 (733)
T KOG0650|consen  639 SSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNP--LIVPLKRLRGHEKTNDLGVLDTIWHPR  716 (733)
T ss_pred             CcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCC--ceEeeeeccCceeecccceEeecccCC
Confidence            4 677888999999999999999999999999999998842      1111  12355666666542 135888899999


Q ss_pred             CCEEEE-EeCCcEEEE
Q 001362          948 QTRFLL-VHETHLAIY  962 (1092)
Q Consensus       948 g~~la~-~~d~~i~lw  962 (1092)
                      .-+|.+ |.||+|++|
T Consensus       717 qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  717 QPWLFSAGADGTIRLF  732 (733)
T ss_pred             CceEEecCCCceEEee
Confidence            999998 789999998

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=5.5e-21  Score=206.78  Aligned_cols=244  Identities=16%  Similarity=0.233  Sum_probs=196.9

Q ss_pred             EEEEec-CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC-CE
Q 001362          739 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-AY  816 (1092)
Q Consensus       739 ~l~~s~-~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg-~~  816 (1092)
                      .+.|.. +.++|++++.+|.|.+||+.....                   .  .....+  .+|...+.++.|++-. .+
T Consensus        92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-------------------n--k~l~~f--~EH~Rs~~~ldfh~tep~i  148 (839)
T KOG0269|consen   92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIR-------------------N--KLLTVF--NEHERSANKLDFHSTEPNI  148 (839)
T ss_pred             hcccccchhhhheeecCCCcEEEEecCcccc-------------------c--hhhhHh--hhhccceeeeeeccCCccE
Confidence            344443 456688888899999999865210                   0  000011  1499999999999865 67


Q ss_pred             EEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc-eeeEeeccccCCeEEEEE
Q 001362          817 LFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVF  894 (1092)
Q Consensus       817 l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~  894 (1092)
                      |++|+ ||.|++||+...+...++.+....|+.++|+|..+..++++.+.|.+++||++.. ++...+.+|.++|.|+.|
T Consensus       149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw  228 (839)
T KOG0269|consen  149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW  228 (839)
T ss_pred             EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence            77777 8999999999999999999988999999999988999999999999999999864 577888999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE----EeCCcEEEEEcCCceee
Q 001362          895 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTCL  970 (1092)
Q Consensus       895 spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~----~~d~~i~lwd~~~~~~~  970 (1092)
                      +|++.+|||||+|++|+|||..+++.....++.+.       .++..+.|-|+..+.++    +.|..|+|||+...-..
T Consensus       229 hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP  301 (839)
T KOG0269|consen  229 HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP  301 (839)
T ss_pred             cCCCceeeecCCCccEEEEeccCCCccceeEEeec-------ceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence            99999999999999999999998775554455443       25899999999876554    36788999999987777


Q ss_pred             eeeccCCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCce
Q 001362          971 KQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus       971 ~~~~~~h~~~v~~l~fs~-dg~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
                      ...+..|...++.++|.. |-..+.+++.||+|..-.++++..
T Consensus       302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~  344 (839)
T KOG0269|consen  302 YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT  344 (839)
T ss_pred             ceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence            767888999999999965 556888999999987666655543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=5.8e-20  Score=184.56  Aligned_cols=308  Identities=15%  Similarity=0.154  Sum_probs=219.1

Q ss_pred             ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001362          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      .++.|+ +|..+.|.+++...+|||+.|..|+||.++.+..-..          .....-...|..|...|+++.|+|+|
T Consensus         9 ~wH~~~-pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------~~~V~y~s~Ls~H~~aVN~vRf~p~g   77 (434)
T KOG1009|consen    9 SWHDHE-PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------DMKVEYLSSLSRHTRAVNVVRFSPDG   77 (434)
T ss_pred             EecCCC-ceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------ceeEEEeecccCCcceeEEEEEcCCc
Confidence            344665 9999999998865699999999999999987543321          00111223488999999999999999


Q ss_pred             CEEEEEeCCCEEEEEEcc--------C-----CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001362          409 SLLGVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      ..||+|+++|.|.+|...        +     .+.......+.+|...|..++|+||+.  ++++++.|.++++||+..|
T Consensus        78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G  155 (434)
T KOG1009|consen   78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAG  155 (434)
T ss_pred             CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccc
Confidence            999999999999999887        3     122233446788999999999999999  8999999999999999999


Q ss_pred             ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-------------------CCC----Cce
Q 001362          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------------APG----LGC  532 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------------~~~----~~i  532 (1092)
                      ..+..+..|...|..++|.|.  ++++++-+.|...+.+.+..........                   .|.    .-.
T Consensus       156 ~l~~~~~dh~~yvqgvawDpl--~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF  233 (434)
T KOG1009|consen  156 QLLAILDDHEHYVQGVAWDPL--NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF  233 (434)
T ss_pred             eeEeeccccccccceeecchh--hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence            999999999999999999654  4788888888766666554332211100                   011    124


Q ss_pred             EEEEEccCCCEEEEEecCCC-----CceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcC------------------
Q 001362          533 TRMAYSANGRRLFSCGTSKE-----GESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDT------------------  588 (1092)
Q Consensus       533 ~~~~~s~dg~~l~~~~~~~~-----~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~p------------------  588 (1092)
                      ..++|+|||..+++...--+     ..+..|+++-.. .+....+.+..   .+...+.|+|                  
T Consensus       234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lp  310 (434)
T KOG1009|consen  234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLP  310 (434)
T ss_pred             hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEeccccccccccccc
Confidence            56889999999986543111     123345554331 12222233322   3444444443                  


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCce
Q 001362          589 AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS  656 (1092)
Q Consensus       589 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~  656 (1092)
                      -+-.+++++ ...|++||.++..++..... -+...++.++|++||..+++.+.||...+...+..+.
T Consensus       311 yrlvfaiAt-~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  311 YRLVFAIAT-KNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             cceEEEEee-cceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence            222344444 46799999999888776643 2345799999999999999999999988877765543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1.6e-20  Score=203.22  Aligned_cols=284  Identities=16%  Similarity=0.257  Sum_probs=217.8

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCccc-ceEEEccc---ccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001362          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAH---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~-~~~~~~~h---~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~  472 (1092)
                      ....+|+..++-..|+.++.. .++||.+....... ....++..   ...+..+.|.....+ +|++++..|.|.+||+
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N-lIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN-LIATCSTNGVISVWDL  117 (839)
T ss_pred             cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh-hheeecCCCcEEEEec
Confidence            456778888999899888665 47888776432211 11111111   123556778754444 8999999999999999


Q ss_pred             CC---CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC-CCEEEEEe
Q 001362          473 VT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN-GRRLFSCG  548 (1092)
Q Consensus       473 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~~~  548 (1092)
                      ..   .+.+..|..|...++++.|++.. ..+|++|+.||+|++||++......++......|..+.|+|. +..++++.
T Consensus       118 nk~~rnk~l~~f~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~  196 (839)
T KOG0269|consen  118 NKSIRNKLLTVFNEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH  196 (839)
T ss_pred             CccccchhhhHhhhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence            87   67778899999999999999764 369999999999999999999999998888889999999994 55666665


Q ss_pred             cCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001362          549 TSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                      .    .|.+++||++.. ++...+..|.   ++|.++.|+|++.+|++||.|+.|+|||..+.+.......+. ..++.+
T Consensus       197 d----sG~lqlWDlRqp~r~~~k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~r  268 (839)
T KOG0269|consen  197 D----SGYLQLWDLRQPDRCEKKLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGR  268 (839)
T ss_pred             C----CceEEEeeccCchhHHHHhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeee
Confidence            3    678999999854 4556677777   999999999999999999999999999998765443333332 356899


Q ss_pred             EEEccCCC-EEEEEeC--CCeEEEEECCCC-ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001362          628 ICFNKNGT-LLAVIAN--ENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1092)
Q Consensus       628 v~~s~~~~-~l~~~~~--dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1092)
                      |.|-|+.. +||+++.  |..|+|||+... -+...+..|...++.++|.                     +.|...+.+
T Consensus       269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~---------------------~~d~~~l~s  327 (839)
T KOG0269|consen  269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD---------------------SGDRINLWS  327 (839)
T ss_pred             eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc---------------------CCCceeeEe
Confidence            99999655 5665543  789999999866 4556777888888888887                     345666778


Q ss_pred             eccccccce
Q 001362          704 VEAENKSEV  712 (1092)
Q Consensus       704 ~~~d~~i~l  712 (1092)
                      ++.|+++..
T Consensus       328 ~sKD~tv~q  336 (839)
T KOG0269|consen  328 CSKDGTVLQ  336 (839)
T ss_pred             ecCccHHHH
Confidence            888887654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.5e-21  Score=209.29  Aligned_cols=239  Identities=11%  Similarity=0.205  Sum_probs=213.6

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +....|+..|.|+..-..++ .+++|+.|..+-+|.+..-..+..                   +.+|..+|.++.|+++
T Consensus        22 ~~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~   81 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTS   81 (825)
T ss_pred             hhhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcc
Confidence            45567888999999866666 799999999999999876554432                   7899999999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001362          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      ..+|++|+.+|+|++||++.++.++   ++.+|...+.++.|+|-+.  +.++|+.|+.+++||++...|.+.+.+|...
T Consensus        82 E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v  156 (825)
T KOG0267|consen   82 ERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRV  156 (825)
T ss_pred             hhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcce
Confidence            9999999999999999999988777   7889999999999999999  7899999999999999999999999999999


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001362          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1092)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1092)
                      |..+.|  +++|.++++++.|.++++||+..++....+..|...+..+.|+|..-.++.|+.    +..+++||+++.+.
T Consensus       157 v~~l~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~  230 (825)
T KOG0267|consen  157 VDVLRL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEV  230 (825)
T ss_pred             eEEEee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEE
Confidence            999999  558899999999999999999999999999999999999999999888888876    66799999999888


Q ss_pred             EEEEeeccccCCceEEEEEcCCCCEEEEEeCCC
Q 001362          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH  600 (1092)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg  600 (1092)
                      +.......   ..|.+..|+|++..+++|....
T Consensus       231 I~s~~~~~---~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  231 ISSGKPET---DGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eeccCCcc---CCceeeeecCCceeeecCchhh
Confidence            87777665   8899999999999888876543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=1e-19  Score=192.64  Aligned_cols=286  Identities=17%  Similarity=0.152  Sum_probs=197.8

Q ss_pred             cEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeE
Q 001362          747 QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVI  825 (1092)
Q Consensus       747 ~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i  825 (1092)
                      ..|+.+..+|.|.+++.....+.               ++... +..    ...|.+.|..+.+.|....|++++ |.++
T Consensus        65 HiLavadE~G~i~l~dt~~~~fr---------------~ee~~-lk~----~~aH~nAifDl~wapge~~lVsasGDsT~  124 (720)
T KOG0321|consen   65 HILAVADEDGGIILFDTKSIVFR---------------LEERQ-LKK----PLAHKNAIFDLKWAPGESLLVSASGDSTI  124 (720)
T ss_pred             ceEEEecCCCceeeecchhhhcc---------------hhhhh-hcc----cccccceeEeeccCCCceeEEEccCCcee
Confidence            34666777899999986543221               11100 111    114999999999999767777776 7889


Q ss_pred             EEEEcCCceeeEE--ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce--------------------e-----
Q 001362          826 SLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------V-----  878 (1092)
Q Consensus       826 ~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--------------------~-----  878 (1092)
                      ++||+++.+++..  +.+|.+.+.+++|.|.+...+++|+.||.|.|||+.-..                    .     
T Consensus       125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~  204 (720)
T KOG0321|consen  125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK  204 (720)
T ss_pred             eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence            9999999998877  889999999999999889999999999999999985321                    0     


Q ss_pred             --eEeeccccCCeEE---EEEcCCCCEEEEEeC-CCcEEEEEcCCCceeeee-eee--cCCCCcCCCCCceEEEEecCCC
Q 001362          879 --ISKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCR-SLQ--TPDGVMTLAPSETHIQFHKDQT  949 (1092)
Q Consensus       879 --~~~l~~h~~~V~~---l~~spdg~~l~s~s~-Dg~i~iwd~~~~~~~~~~-~~~--~~~~~~~~~~~v~~l~~s~dg~  949 (1092)
                        +....+|...|.+   +.+.-|...||++|. |+.|+|||+......... ...  ....+..-.-.+.++.....|.
T Consensus       205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt  284 (720)
T KOG0321|consen  205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT  284 (720)
T ss_pred             ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence              1222345566666   666678899999998 999999999875422211 111  1111111112466777777778


Q ss_pred             EEEE-EeCCcEEEEEcCCceeeee-eccCC--CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCC
Q 001362          950 RFLL-VHETHLAIYEAEELTCLKQ-WFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1092)
Q Consensus       950 ~la~-~~d~~i~lwd~~~~~~~~~-~~~~h--~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1025 (1092)
                      +|.+ +.|+.|++|++.+-..-.. .+.++  ...-..-..||||.+|++|+.|..+++|.+...+.--...    ..  
T Consensus       285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~G--  358 (720)
T KOG0321|consen  285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----LG--  358 (720)
T ss_pred             eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----hC--
Confidence            8877 7999999999975432211 12222  1111223468999999999999999999999876642222    11  


Q ss_pred             CccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001362         1026 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1026 ~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                       |.-+|.  +++|.|.+-.-++++++|.++++|++.
T Consensus       359 -ht~eVt--~V~w~pS~~t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  359 -HTREVT--TVRWLPSATTPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             -cceEEE--EEeeccccCCCceeeccCcceEEEecc
Confidence             334444  555555445678888999999999994

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=4e-19  Score=171.96  Aligned_cols=268  Identities=13%  Similarity=0.197  Sum_probs=195.7

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC--CC
Q 001362          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG  408 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg  408 (1092)
                      .+|.+-|.|+.|.+-|++ +|+|+.|++|+|||.....--...+               ...+.|.+.|..+.|.+  -|
T Consensus        10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~T---------------s~Wrah~~Si~rV~WAhPEfG   73 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCT---------------SSWRAHDGSIWRVVWAHPEFG   73 (361)
T ss_pred             cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEEe---------------eeEEecCCcEEEEEecCcccc
Confidence            589999999999999996 8999999999999975543322111               11556999999999976  59


Q ss_pred             CEEEEEeCCCEEEEEEccC------CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc------
Q 001362          409 SLLGVAYSKHIVQLYAYHG------GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS------  476 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~------~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~------  476 (1092)
                      +.+|+++.|+++.||.-..      +.......++......|+++.|.|.-..+.+++++.||.+|||+.-..-      
T Consensus        74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~  153 (361)
T KOG2445|consen   74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT  153 (361)
T ss_pred             ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence            9999999999999998631      1122233456677789999999998877799999999999999865432      


Q ss_pred             eeEEEe-------cCCcCeEEEeecccCCc-cEEEEEecC-----CeEEEEEcCCCCc----eEEecCCCCceEEEEEcc
Q 001362          477 RTYSFE-------GHGAPVYSLCPHAKENI-HFIFSISVD-----GKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSA  539 (1092)
Q Consensus       477 ~~~~~~-------~~~~~v~~~~~~~~~~~-~~l~s~~~d-----g~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~  539 (1092)
                      +.++++       .+..+..|+.|+++.-. .+|+.|+.+     +.+.||.......    ..++..+..+|+.++|.|
T Consensus       154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP  233 (361)
T KOG2445|consen  154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP  233 (361)
T ss_pred             hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence            223333       35667778888765432 466766665     4789998776653    235678888999999999


Q ss_pred             CC----CEEEEEecCCCCceeEEEEeCCCCe-----------------EEEEEeeccccCCceEEEEEcCCCCEEEEEeC
Q 001362          540 NG----RRLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD  598 (1092)
Q Consensus       540 dg----~~l~~~~~~~~~~~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~  598 (1092)
                      +-    ..|++++.    +| |+||.+....                 .+..+..+..|++.|..+.|+-.|..|.+.|.
T Consensus       234 n~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd  308 (361)
T KOG2445|consen  234 NIGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD  308 (361)
T ss_pred             ccCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence            53    34666654    44 9999876311                 12333333444599999999999999999999


Q ss_pred             CCcEEEEECCC---CceEEEEeCC
Q 001362          599 DHVIKIWDMNK---VQLLTTIDAG  619 (1092)
Q Consensus       599 dg~i~iwd~~~---~~~~~~~~~~  619 (1092)
                      ||.||+|...-   .++...+...
T Consensus       309 DG~VRLWkany~n~~kC~sv~~~e  332 (361)
T KOG2445|consen  309 DGCVRLWKANYNNLWKCTSVLKAE  332 (361)
T ss_pred             CceeeehhhhhhhhheeeeEEecc
Confidence            99999997542   3344455444

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=5.3e-19  Score=171.08  Aligned_cols=256  Identities=13%  Similarity=0.179  Sum_probs=190.5

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC-cccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK  468 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~  468 (1092)
                      -.+|.+-|+++.|.+.|+.+|+|+.|++|+|||...+. ........+.|.+.|..+.|.+-  |+  .+++++.|+++.
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~   86 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS   86 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence            55799999999999999999999999999999965432 34445567899999999999764  56  899999999999


Q ss_pred             EEECCC------C---ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE------Eec-------
Q 001362          469 VWDAVT------G---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DYD-------  526 (1092)
Q Consensus       469 vwd~~~------~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~-------  526 (1092)
                      ||.-..      +   ....++......|+.++|.|..-|-.+++++.||.+|||+........      ++.       
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            997421      1   123556677889999999999999999999999999999765433221      111       


Q ss_pred             CCCCceEEEEEccC---CCEEEEEecCC-CCceeEEEEeCCCC--e--EEEEEeeccccCCceEEEEEcCCC----CEEE
Q 001362          527 APGLGCTRMAYSAN---GRRLFSCGTSK-EGESFLVEWNESEG--A--IKRTYQGLQLQHNSVSVVHFDTAK----DQIL  594 (1092)
Q Consensus       527 ~~~~~i~~~~~s~d---g~~l~~~~~~~-~~~~~i~iwd~~~~--~--~~~~~~~~~~~~~~v~~~~~~p~~----~~l~  594 (1092)
                      .+..+..|+.|+|.   ..++++++.+. ...+.++||....+  +  .+..+.+|.   .+|+.++|.|+-    ..++
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence            23446788899873   34677666431 11234666655432  2  344566666   999999999973    5678


Q ss_pred             EEeCCCcEEEEECCCCc-----------------eEEEEe-CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001362          595 AAGDDHVIKIWDMNKVQ-----------------LLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       595 ~~s~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      +++.|| |+||.+....                 .+..+. ..+|...|..+.|+-.|..|++.+.||.+++|...-
T Consensus       244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            899999 9999987311                 112222 334556799999999999999999999999998653

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=5.8e-19  Score=172.33  Aligned_cols=299  Identities=15%  Similarity=0.205  Sum_probs=207.1

Q ss_pred             ccccEEEEEEec----CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001362          733 KANKISRLTYNN----GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF  808 (1092)
Q Consensus       733 ~~~~i~~l~~s~----~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~  808 (1092)
                      |..+|..++|.+    +...+++......+.+|+.+...                    +.++..... ...+......+
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~-D~d~~Esfytc   95 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYA-DEDHDESFYTC   95 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeecc-CCCCCcceEEE
Confidence            677888888874    33345555556688888876431                    112222222 22466677778


Q ss_pred             EEecCC----CEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec
Q 001362          809 ALSKND----AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE  883 (1092)
Q Consensus       809 ~~s~dg----~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~  883 (1092)
                      +|+-|-    -++|.++ -|.|+|.|..++++...+.+|...|..+.+.|++.++|++++.|..|++|++++..++..+-
T Consensus        96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG  175 (385)
T KOG1034|consen   96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG  175 (385)
T ss_pred             EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence            887653    3566665 59999999999999999999999999999999878899999999999999999999998874


Q ss_pred             ---cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee-------------eeeeecCCCCcC-------CCCCce
Q 001362          884 ---GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-------------CRSLQTPDGVMT-------LAPSET  940 (1092)
Q Consensus       884 ---~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~~-------~~~~v~  940 (1092)
                         ||.+.|.++.|+++|.+++|+|.|.+|++|++...+...             ...+.++..+.+       +...|.
T Consensus       176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD  255 (385)
T KOG1034|consen  176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD  255 (385)
T ss_pred             ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence               699999999999999999999999999999998533111             001111111111       001222


Q ss_pred             EEEEecCCCEEEE-EeCCcEEEEEc-CCceeeeee------------ccCCCCCEEEEEEe--cCCCEEEEEECCCcEEE
Q 001362          941 HIQFHKDQTRFLL-VHETHLAIYEA-EELTCLKQW------------FPISSVPISQATFS--CDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus       941 ~l~~s~dg~~la~-~~d~~i~lwd~-~~~~~~~~~------------~~~h~~~v~~l~fs--~dg~~l~t~~~Dg~i~v 1004 (1092)
                      ++.|-  |.++++ +.++.|..|.. +-.+.+...            +.-....|+-+.|+  |-+++||.|...|.|.+
T Consensus       256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v  333 (385)
T KOG1034|consen  256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV  333 (385)
T ss_pred             HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence            22222  577777 78899999987 212221111            11125566666655  55789999999999999


Q ss_pred             EEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001362         1005 HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1005 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      ||++..+... ..   .+.....+..|+  ..+|+. |+..|+..++|++|.-||..
T Consensus       334 wdL~~~ep~~-~t---tl~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  334 WDLDNNEPPK-CT---TLTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EECCCCCCcc-Cc---eEEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence            9999876641 11   111111234455  456676 58999999999999999863

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=3.9e-19  Score=173.52  Aligned_cols=298  Identities=15%  Similarity=0.260  Sum_probs=214.3

Q ss_pred             eecccCCCCceEEeecC----CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          328 QTLIEGSSSPMSMDFHP----VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~sp----dg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      +.+.+|..+|..++|.+    +...++|+.+. ..+.+|+....--+..              ++...-..|......++
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~--------------lq~y~D~d~~Esfytcs   96 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRL--------------LQSYADEDHDESFYTCS   96 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceee--------------eeeccCCCCCcceEEEE
Confidence            45568888999999983    33335666554 6788998765432211              11111334788888899


Q ss_pred             ECCCC----CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001362          404 WSPDG----SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       404 ~spdg----~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      |+-|.    -+||+|+.-|.|+|.|+.++++..   .+.+|...|+.+.|.|+..+ +++++|.|.+|++|++++..++.
T Consensus        97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~  172 (385)
T KOG1034|consen   97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVA  172 (385)
T ss_pred             EEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEE
Confidence            98753    478999999999999999987766   67899999999999999877 79999999999999999999998


Q ss_pred             EE---ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE------Ee----------------------cCC
Q 001362          480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DY----------------------DAP  528 (1092)
Q Consensus       480 ~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~----------------------~~~  528 (1092)
                      .|   .||.+.|.++.|+.  +|.++++++.|..+++|++...+-..      .+                      ..|
T Consensus       173 VfGG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH  250 (385)
T KOG1034|consen  173 VFGGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH  250 (385)
T ss_pred             EecccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence            87   56999999999955  66799999999999999997432111      01                      111


Q ss_pred             CCceEEEEEccCCCEEEEEecCCCCceeEEEEeC-CCCeEE----------EEEeeccccCCceEEE--EEcCCCCEEEE
Q 001362          529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAIK----------RTYQGLQLQHNSVSVV--HFDTAKDQILA  595 (1092)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~-~~~~~~----------~~~~~~~~~~~~v~~~--~~~p~~~~l~~  595 (1092)
                      ...|.++.|-  |.++++-+-    ++.|..|.+ +-++.+          ..+.........+.-+  +|.|-++.|+.
T Consensus       251 rnyVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~  324 (385)
T KOG1034|consen  251 RNYVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL  324 (385)
T ss_pred             cchHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence            1122222222  456665543    557999987 222211          1111111112444444  55677899999


Q ss_pred             EeCCCcEEEEECCCCce--EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001362          596 AGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       596 ~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      |...|.|++||++....  ..++..+.....|...+|+.||..|+...+|++|.-||..
T Consensus       325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            99999999999987655  3444444455678999999999999999999999999854

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=1.3e-19  Score=191.87  Aligned_cols=285  Identities=18%  Similarity=0.227  Sum_probs=206.2

Q ss_pred             CCCceEEEEEcCCCcEEEEecCCCCee-EEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEE
Q 001362          344 PVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL  422 (1092)
Q Consensus       344 pdg~~llasg~~d~~v~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~i  422 (1092)
                      |+.+.+||.+..||.|.++|...-.-. ....+            .  ....|...|..++|-|....|++++.|.++++
T Consensus        61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~l------------k--~~~aH~nAifDl~wapge~~lVsasGDsT~r~  126 (720)
T KOG0321|consen   61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQL------------K--KPLAHKNAIFDLKWAPGESLLVSASGDSTIRP  126 (720)
T ss_pred             CCccceEEEecCCCceeeecchhhhcchhhhhh------------c--ccccccceeEeeccCCCceeEEEccCCceeee
Confidence            444568999999999999998764322 11011            1  14569999999999997778999999999999


Q ss_pred             EEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc--------------------------
Q 001362          423 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--------------------------  476 (1092)
Q Consensus       423 wd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--------------------------  476 (1092)
                      ||+++++..... .+.||.+.|.+++|.|+... .+++|+.||.|.|||+.-..                          
T Consensus       127 Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~  204 (720)
T KOG0321|consen  127 WDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK  204 (720)
T ss_pred             eeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence            999998876643 46799999999999999886 79999999999999975322                          


Q ss_pred             -eeEEEecCCcCeEE----EeecccCCccEEEEEec-CCeEEEEEcCCCCceEE--------ecCC---CCceEEEEEcc
Q 001362          477 -RTYSFEGHGAPVYS----LCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVD--------YDAP---GLGCTRMAYSA  539 (1092)
Q Consensus       477 -~~~~~~~~~~~v~~----~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~--------~~~~---~~~i~~~~~s~  539 (1092)
                       .+.....+...|.+    +.|   .|...|++++. |+.|+|||++.......        +..+   ...+.++....
T Consensus       205 kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs  281 (720)
T KOG0321|consen  205 KRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS  281 (720)
T ss_pred             ccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence             01112234434433    333   36678998887 99999999987654332        2222   23677888888


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCCC--eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE-EE
Q 001362          540 NGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT-TI  616 (1092)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~-~~  616 (1092)
                      .|.+|++...    |+.|+.|++.+-  ..+..+.++......+ .-..+|++.++++|+.|...++|.+.+.+.-. .+
T Consensus       282 sGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l  356 (720)
T KOG0321|consen  282 SGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL  356 (720)
T ss_pred             CCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCcceeeeeecCccCChhhh
Confidence            8888877765    667999998754  3344455544111122 23478999999999999999999998765433 23


Q ss_pred             eCCCCCCCCceEEEccC-CCEEEEEeCCCeEEEEECCCC
Q 001362          617 DAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       617 ~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      .  ++...|.+++|.|. -.-++++++|..++||++..+
T Consensus       357 ~--Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  357 L--GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             h--CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            3  33456899999873 334667799999999999654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=8.7e-20  Score=185.48  Aligned_cols=253  Identities=15%  Similarity=0.177  Sum_probs=193.6

Q ss_pred             cEEEEEECC-------CCCEEEEEeCCCEEEEEEccCCCcccceEEE------------------cccccceeEEEEecC
Q 001362          398 SVNRVVWSP-------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEI------------------DAHVGNVNDLAFSAP  452 (1092)
Q Consensus       398 ~V~~l~~sp-------dg~~las~~~d~~i~iwd~~~~~~~~~~~~~------------------~~h~~~v~~~~~s~d  452 (1092)
                      ...|++|..       -|+|+|.|+.|..|.|||+.-...+.+...|                  .+|+..|.+++|+..
T Consensus       175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~  254 (463)
T KOG0270|consen  175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN  254 (463)
T ss_pred             cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence            334666643       3689999999999999998643222222222                  379999999999998


Q ss_pred             CCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCce
Q 001362          453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGC  532 (1092)
Q Consensus       453 ~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i  532 (1092)
                      -+. +|+|||.|.+|++||+.+|++..++..|...|.++.|++. ...+|++|+.|++|.+.|.+........-...+.|
T Consensus       255 ~~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~V  332 (463)
T KOG0270|consen  255 FRN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEV  332 (463)
T ss_pred             cce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccce
Confidence            777 8999999999999999999999999999999999999986 45799999999999999998543332222234578


Q ss_pred             EEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC
Q 001362          533 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV  610 (1092)
Q Consensus       533 ~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~s~dg~i~iwd~~~~  610 (1092)
                      ..++|.|.....+.++.   .+|+|+-+|.+.. +++.+++.|.   ++|.++++++... .+++++.|+.|.+|++..-
T Consensus       333 Ekv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  333 EKVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             EEEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence            88999998877666664   3788999999865 8899999988   8999999998754 5667999999999998764


Q ss_pred             ceEEEEeCCCCCCCCceEEEccCC-CEEEEEeCCCeEEEEECCCCceee
Q 001362          611 QLLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD  658 (1092)
Q Consensus       611 ~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~  658 (1092)
                      .........-......|.++.|+- -+++.|+..+.++|||+.+...+.
T Consensus       407 ~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  407 SPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             CCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            442222211112234566777754 467788888899999998775443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2.2e-20  Score=211.99  Aligned_cols=298  Identities=16%  Similarity=0.257  Sum_probs=226.7

Q ss_pred             CceEEeecCCCceEEEEEcCC----------CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001362          336 SPMSMDFHPVQHTLLLVGTNV----------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d----------~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      .-..+||||++..++|+|...          .++.||.+.-.....       |+       +..---.-....+.++|+
T Consensus         8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~-------dl-------k~~~s~~s~~rF~kL~W~   73 (1049)
T KOG0307|consen    8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS-------DL-------KPVGSLQSSNRFNKLAWG   73 (1049)
T ss_pred             ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc-------cc-------cccccccccccceeeeec
Confidence            334689999997678877532          334455443211110       00       000000123567889999


Q ss_pred             CCCCE----EEEEeCCCEEEEEEccC---CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001362          406 PDGSL----LGVAYSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       406 pdg~~----las~~~d~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      +.|..    ||.|..||.|.+||...   +.....+.+...|.+.|..+.|++.... +|++|+.||.|.|||+..-+.-
T Consensus        74 ~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP  152 (1049)
T KOG0307|consen   74 SYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETP  152 (1049)
T ss_pred             ccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCC
Confidence            97766    88889999999999875   4444444467789999999999999876 7999999999999999886655


Q ss_pred             EEEe--cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--ceEEEEEccCCCEEEEEecCCCCc
Q 001362          479 YSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       479 ~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      ....  .....|.+++|+.. ..++|++++.+|++.|||++..+.+..+..+..  .+..++|+|++..-+....+.+..
T Consensus       153 ~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~  231 (1049)
T KOG0307|consen  153 FTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSA  231 (1049)
T ss_pred             CCCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCC
Confidence            5442  24567999999743 557899999999999999999988887766655  477899999876433333345668


Q ss_pred             eeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001362          555 SFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       555 ~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      -.|.+||++. ...++.+++|.   ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+  ..+..+.|+|
T Consensus       232 PviqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--nW~fdv~w~p  306 (1049)
T KOG0307|consen  232 PVIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG--NWCFDVQWCP  306 (1049)
T ss_pred             ceeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--cceeeeeecC
Confidence            8999999874 45667788888   899999999987 788899999999999999999999998643  4688999999


Q ss_pred             CCC-EEEEEeCCCeEEEEECCCC
Q 001362          633 NGT-LLAVIANENRIKILETPES  654 (1092)
Q Consensus       633 ~~~-~l~~~~~dg~i~iw~~~~~  654 (1092)
                      ... .+++++-||.|.|+.+...
T Consensus       307 r~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  307 RNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             CCcchhhhheeccceeeeeeecC
Confidence            654 8899999999999998765

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=2.1e-16  Score=183.96  Aligned_cols=372  Identities=23%  Similarity=0.395  Sum_probs=285.3

Q ss_pred             EcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEecCCc-CeEEEeecccCCcc-EEEEEec-CCeEE
Q 001362          437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGA-PVYSLCPHAKENIH-FIFSISV-DGKIK  512 (1092)
Q Consensus       437 ~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i~  512 (1092)
                      +..|...+..+.|.+.+.  .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. +++..+. |+.+.
T Consensus        61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence            557999999999999999  78888899999999998887 6777776443 77777775 55555 5555444 99999


Q ss_pred             EEEcCC-CCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001362          513 AWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD  591 (1092)
Q Consensus       513 vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  591 (1092)
                      +|+... ......+..+...+..++|+|+++.+++++.   .++.+++|+...+..+..+.+|.   ..+.+++|+|++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~  211 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDGG  211 (466)
T ss_pred             EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCcc
Confidence            999998 7777788889999999999999998777743   36779999999988888888876   8999999999998


Q ss_pred             -EEEEEeCCCcEEEEECCCCceEE-EEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCce-eeecccccCcee
Q 001362          592 -QILAAGDDHVIKIWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS-VDAAGVLSDNLR  668 (1092)
Q Consensus       592 -~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~v~  668 (1092)
                       .+++++.|+.+++||...+.... .+..+...  . ...|++++.++++++.|+.+++|+...... +...        
T Consensus       212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------  280 (466)
T COG2319         212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS--V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------  280 (466)
T ss_pred             eEEEEecCCCcEEEEECCCCcEEeeecCCCCcc--e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------
Confidence             44555899999999988777777 46555332  2 228999998999999999999999886532 1100        


Q ss_pred             eeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcE
Q 001362          669 KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA  748 (1092)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~  748 (1092)
                                                                                    ..|...+.++.+.|++..
T Consensus       281 --------------------------------------------------------------~~~~~~v~~~~~~~~~~~  298 (466)
T COG2319         281 --------------------------------------------------------------SGHSSSVLSVAFSPDGKL  298 (466)
T ss_pred             --------------------------------------------------------------ecCCccEEEEEECCCCCE
Confidence                                                                          114567778888888888


Q ss_pred             EEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE--eCCeEE
Q 001362          749 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVIS  826 (1092)
Q Consensus       749 l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~--sdg~i~  826 (1092)
                      +++++.++.+.+|+......                      .....  ...|...+..+.+.+++..++.+  .++.+.
T Consensus       299 ~~~~~~d~~~~~~~~~~~~~----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  354 (466)
T COG2319         299 LASGSSDGTVRLWDLETGKL----------------------LSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR  354 (466)
T ss_pred             EEEeeCCCcEEEEEcCCCce----------------------EEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence            88888887788886544321                      11111  11255678888884333555555  368899


Q ss_pred             EEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEE-EeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEe
Q 001362          827 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG  905 (1092)
Q Consensus       827 iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s  905 (1092)
                      +|+............. ..+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..+++++
T Consensus       355 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (466)
T COG2319         355 LWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS  431 (466)
T ss_pred             eeecCCCceeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEec
Confidence            9999887733333322 2288999998 7 55555 88999999999999887777765547899999999999999999


Q ss_pred             CCCcEEEEEcCC
Q 001362          906 GDAQIFVWDVDG  917 (1092)
Q Consensus       906 ~Dg~i~iwd~~~  917 (1092)
                      .++.+++|+...
T Consensus       432 ~~~~~~~~~~~~  443 (466)
T COG2319         432 SDNTIRLWDLKT  443 (466)
T ss_pred             CCCcEEEEeccC
Confidence            999999999987

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=7.6e-17  Score=187.66  Aligned_cols=371  Identities=23%  Similarity=0.349  Sum_probs=274.9

Q ss_pred             ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCC-eeEEeeeeeeecccccceeeEeeecCCC-CcEEEEEE-C
Q 001362          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-S  405 (1092)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~-s  405 (1092)
                      .+.+|...|.++.|.+.+. .++.++.|+.+.+|+...+. ....                   +.++. ..+..+.+ +
T Consensus        60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~  119 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS  119 (466)
T ss_pred             eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence            5678899999999999998 67888889999999999886 3322                   23322 46777777 8


Q ss_pred             CCCC-EEEEEeC-CCEEEEEEccC-CCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-CCcEEEEECCCCceeEEE
Q 001362          406 PDGS-LLGVAYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSF  481 (1092)
Q Consensus       406 pdg~-~las~~~-d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~  481 (1092)
                      +++. +++..+. |+.+.+|+... ....   ..+..|...|..++|+|++.  .+++++. |+.+++|+..++..+..+
T Consensus       120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (466)
T COG2319         120 PDGNSILLASSSLDGTVKLWDLSTPGKLI---RTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL  194 (466)
T ss_pred             CCcceEEeccCCCCccEEEEEecCCCeEE---EEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence            8888 5555444 89999999987 4323   36778999999999999999  6777775 999999999999999999


Q ss_pred             ecCCcCeEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001362          482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       482 ~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                      .+|...|.++++.  +++. ++++++.|+.|++||........ .+..+.... ...|++++..+++++.    ++.+++
T Consensus       195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~  267 (466)
T COG2319         195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL  267 (466)
T ss_pred             ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence            9999999999997  4555 55666999999999888666655 466666654 3389999988886654    667999


Q ss_pred             EeCCCCeE-EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001362          560 WNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       560 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  638 (1092)
                      |+...... ...+.+|.   ..+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.|.+++..++
T Consensus       268 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (466)
T COG2319         268 WDLRSSSSLLRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV  344 (466)
T ss_pred             eeecCCCcEEEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEE
Confidence            99987665 44444444   889999999988899888888999999998887776665112222578888843435666


Q ss_pred             EE-eCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee-eccccccceeccc
Q 001362          639 VI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS-VEAENKSEVEKPL  716 (1092)
Q Consensus       639 ~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s-~~~d~~i~lw~~~  716 (1092)
                      .+ ..|+.+.+|+............... +..+.+.                      ++ ..... +..++.+.+|+..
T Consensus       345 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------~~-~~~~~~~~~~~~~~~~~~~  400 (466)
T COG2319         345 SGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS----------------------PD-GRVVSSGSTDGTVRLWDLS  400 (466)
T ss_pred             EeecCCCcEEeeecCCCceeEEecCCce-EEEEEEC----------------------CC-CCEEEEecCCCceEEEecc
Confidence            65 6789999999988762222222211 4555554                      22 22233 5778899999976


Q ss_pred             cccCccccccccCCcccc-ccEEEEEEecCCcEEEEeecCCeeEEEeecC
Q 001362          717 FARPSECQSLLLPSKVKA-NKISRLTYNNGGQAIFALASNGVHLMWRWPR  765 (1092)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~  765 (1092)
                      .........       .. ..+....+++++..++.++.++.+++|+...
T Consensus       401 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         401 TGSLLRNLD-------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             cCeeeeecc-------CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            433222111       11 6788899999999999988899999998643

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=9e-19  Score=179.57  Aligned_cols=293  Identities=16%  Similarity=0.203  Sum_probs=214.5

Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE--eCCCeEEEEECCCCceeeecccccCceeeee
Q 001362          594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLS  671 (1092)
Q Consensus       594 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~  671 (1092)
                      ..++....+++||.........+..+...+.+.+++|+.... |+++  +.|..+++|.-.....               
T Consensus         6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~---------------   69 (673)
T KOG4378|consen    6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTP---------------   69 (673)
T ss_pred             eeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCC---------------
Confidence            334444579999998877776666666666789999987654 4443  4577788886442200               


Q ss_pred             ecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEE
Q 001362          672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA  751 (1092)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~  751 (1092)
                                                           +|-+-...                ....-.|++......++++
T Consensus        70 -------------------------------------~Vp~~~k~----------------~gd~~~Cv~~~s~S~y~~s   96 (673)
T KOG4378|consen   70 -------------------------------------EVPRVRKL----------------TGDNAFCVACASQSLYEIS   96 (673)
T ss_pred             -------------------------------------ccceeecc----------------ccchHHHHhhhhcceeeec
Confidence                                                 00000000                1112223344444578999


Q ss_pred             eecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEc
Q 001362          752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV  830 (1092)
Q Consensus       752 ~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~  830 (1092)
                      ++..+.++|||++...                        .-..+.  +|...|+++.+.-...|||++++ |.|.|..+
T Consensus        97 gG~~~~Vkiwdl~~kl------------------------~hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~  150 (673)
T KOG4378|consen   97 GGQSGCVKIWDLRAKL------------------------IHRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT  150 (673)
T ss_pred             cCcCceeeehhhHHHH------------------------Hhhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence            9999999999986421                        111122  48899999999999999999995 88999999


Q ss_pred             CCceeeEEecCCCC-CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee-ccccCCeEEEEEcCCC-CEEEEEeCC
Q 001362          831 MTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDAL-NILVSSGGD  907 (1092)
Q Consensus       831 ~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~spdg-~~l~s~s~D  907 (1092)
                      .++.....|....+ .|+-+.|+|....+|.+++.+|.|.+||+....+...+ +.|..+...++|+|.. .+|++.|.|
T Consensus       151 ~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D  230 (673)
T KOG4378|consen  151 KTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD  230 (673)
T ss_pred             ccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc
Confidence            99988888876544 56689999966678888999999999999987766554 5699999999999954 778999999


Q ss_pred             CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCCCEEEEEE
Q 001362          908 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATF  986 (1092)
Q Consensus       908 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~f  986 (1092)
                      +.|.+||........  ++..       ..+..+++|+++|.+|++| ..|.|..||++..+..-..+..|...|++++|
T Consensus       231 kki~~yD~~s~~s~~--~l~y-------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf  301 (673)
T KOG4378|consen  231 KKINIYDIRSQASTD--RLTY-------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF  301 (673)
T ss_pred             ceEEEeecccccccc--eeee-------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence            999999998643222  1111       1257899999999999996 77999999998766555557789999999999


Q ss_pred             ecCC
Q 001362          987 SCDC  990 (1092)
Q Consensus       987 s~dg  990 (1092)
                      -+..
T Consensus       302 q~s~  305 (673)
T KOG4378|consen  302 QPSP  305 (673)
T ss_pred             eecc
Confidence            8765

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.82  E-value=6.6e-19  Score=179.58  Aligned_cols=306  Identities=13%  Similarity=0.118  Sum_probs=222.4

Q ss_pred             CceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccc
Q 001362          654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK  733 (1092)
Q Consensus       654 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~  733 (1092)
                      -......+.+...|++++|.|.                    ...+++++|+.-|.|-+|++...++.....+.+  ..|
T Consensus       176 ~~~~~v~kv~~~Rit~l~fHPt--------------------~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f--~~h  233 (498)
T KOG4328|consen  176 YRILNVAKVTDRRITSLAFHPT--------------------ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF--TPH  233 (498)
T ss_pred             ceecceeEecccceEEEEeccc--------------------CcceEEEEccCCCcEEEEecCCCCCccCceEEe--ccC
Confidence            3444556667788999999874                    345788999999999999996444443333333  348


Q ss_pred             cccEEEEEEecC-CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001362          734 ANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       734 ~~~i~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      ..+|.++.|+|. -..+++.+.||+|++-|+......           .         ++..+    .....+..+.|+.
T Consensus       234 s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-----------~---------v~s~~----~d~~~fs~~d~~~  289 (498)
T KOG4328|consen  234 SGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-----------E---------VLSLD----TDNIWFSSLDFSA  289 (498)
T ss_pred             CccccceEecCCChhheeeeccCceeeeeeecchhhH-----------H---------HhhcC----ccceeeeeccccC
Confidence            999999999995 456888999999999887654210           0         11100    1345667788888


Q ss_pred             CCCEEEEEeC-CeEEEEEcCCcee-eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee----eEeecccc
Q 001362          813 NDAYLFSASG-GVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----ISKLEGHS  886 (1092)
Q Consensus       813 dg~~l~~~sd-g~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~----~~~l~~h~  886 (1092)
                      +...++.+.+ |.+.+||..+... ...+.-|...|+.++++|....+|||++.|++++|||++.-..    .-....|.
T Consensus       290 e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr  369 (498)
T KOG4328|consen  290 ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR  369 (498)
T ss_pred             CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccc
Confidence            8888888875 8999999987654 5666778889999999998888999999999999999976322    23334599


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcC---CCceeeeeeeecC--CCCcCCCCCceEEEEecCCCEEEEE-eCCcEE
Q 001362          887 KRVTGLVFSDALNILVSSGGDAQIFVWDVD---GWGIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV-HETHLA  960 (1092)
Q Consensus       887 ~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~---~~~~~~~~~~~~~--~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~  960 (1092)
                      ..|.+..|||++..|+|.+.|..|+|||..   ..-... ..+...  .+..   -.....+|.||..+++++ .-..|-
T Consensus       370 rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~-~~I~Hn~~t~Rw---lT~fKA~W~P~~~li~vg~~~r~ID  445 (498)
T KOG4328|consen  370 RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL-GTIPHNNRTGRW---LTPFKAAWDPDYNLIVVGRYPRPID  445 (498)
T ss_pred             ceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcc-ceeeccCccccc---ccchhheeCCCccEEEEeccCccee
Confidence            999999999999889999999999999985   111111 111111  1111   135667899999999996 567799


Q ss_pred             EEEcCCceeeeeeccCCCCCEEE-EEEecCCCEEEEEE-CCCcEEEEEcCC
Q 001362          961 IYEAEELTCLKQWFPISSVPISQ-ATFSCDCRMVFTSF-VDGTLSIHEASN 1009 (1092)
Q Consensus       961 lwd~~~~~~~~~~~~~h~~~v~~-l~fs~dg~~l~t~~-~Dg~i~vwd~~~ 1009 (1092)
                      |+|...++.+..+.......|.+ ..|.|-+..+++|+ ..|.|+||--+.
T Consensus       446 v~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~  496 (498)
T KOG4328|consen  446 VFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK  496 (498)
T ss_pred             EEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence            99999999888765555555655 46888777455554 567888886543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=1.4e-18  Score=178.29  Aligned_cols=293  Identities=14%  Similarity=0.174  Sum_probs=219.9

Q ss_pred             EEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE--eCCCEEEEEEccC
Q 001362          350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHG  427 (1092)
Q Consensus       350 lasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~--~~d~~i~iwd~~~  427 (1092)
                      +|+++  .+++|||+..-+....+.                 -....-.+.++.|+.... |+++  +.|..|++|.-..
T Consensus         7 ~aS~g--d~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g   66 (673)
T KOG4378|consen    7 VASTG--DKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDG   66 (673)
T ss_pred             eeccC--CceEEeecccccCccccc-----------------cCCCCCcceeeeccccce-EEEeecCCceeEEEecccC
Confidence            44443  579999997655432210                 001123488999998664 4443  5678899997654


Q ss_pred             CCc-ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe
Q 001362          428 GSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS  506 (1092)
Q Consensus       428 ~~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  506 (1092)
                      ... +.......+.  .-.|++......  ++++|+..+.|+|||++...+.+.+++|...|+++.++.  ...+|++++
T Consensus        67 ~~~~Vp~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs  140 (673)
T KOG4378|consen   67 KTPEVPRVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVS  140 (673)
T ss_pred             CCCccceeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEec
Confidence            311 1111122222  233333333334  899999999999999998888889999999999999865  447999999


Q ss_pred             cCCeEEEEEcCCCCceEEecCC-CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001362          507 VDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH  585 (1092)
Q Consensus       507 ~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  585 (1092)
                      ..|.|.+..+.++.....+... +..+.-+.|+|..+.+++...+   ++.|.+||......+..+..  .|..+...++
T Consensus       141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gic  215 (673)
T KOG4378|consen  141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGIC  215 (673)
T ss_pred             cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCcce
Confidence            9999999999988877777766 4456789999998887766542   77899999988777655433  2358889999


Q ss_pred             EcCCCC-EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC-ceeeecccc
Q 001362          586 FDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVL  663 (1092)
Q Consensus       586 ~~p~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~  663 (1092)
                      |+|.+. .+++.+.|..|.+||....+....+....   +...++|+++|.+|++|...|.|..||++.. .++..+..|
T Consensus       216 fspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah  292 (673)
T KOG4378|consen  216 FSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH  292 (673)
T ss_pred             ecCCccceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec
Confidence            999765 45668999999999999887777776543   4689999999999999999999999999854 678889999


Q ss_pred             cCceeeeeecCCC
Q 001362          664 SDNLRKLSVNPIS  676 (1092)
Q Consensus       664 ~~~v~~~~~~~~~  676 (1092)
                      ...|++++|.+..
T Consensus       293 ~~sVt~vafq~s~  305 (673)
T KOG4378|consen  293 DASVTRVAFQPSP  305 (673)
T ss_pred             ccceeEEEeeecc
Confidence            9999999998765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=4.8e-17  Score=175.90  Aligned_cols=604  Identities=12%  Similarity=0.111  Sum_probs=358.2

Q ss_pred             CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC------
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG------  408 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg------  408 (1092)
                      ..-.++.|+|.|  |+|-|+. ..|.|-|..+-+.+..                   +.-|...|+.+.|.|-.      
T Consensus        16 sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ll   73 (1062)
T KOG1912|consen   16 SNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDLL   73 (1062)
T ss_pred             ccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhcc
Confidence            357789999999  6888875 6799999998887765                   55699999999998731      


Q ss_pred             ------CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec---CCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001362          409 ------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       409 ------~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                            -+||++...|.|.+||...+..+.   .+..|..++..++|-+   +++. +|+.-....++.+|+..+|+...
T Consensus        74 S~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~W  149 (1062)
T KOG1912|consen   74 SPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFW  149 (1062)
T ss_pred             CccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceee
Confidence                  257788888999999999886555   5677888999999876   3434 55556667799999999999998


Q ss_pred             EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC------ceEEe-cCCCC----------------------
Q 001362          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDY-DAPGL----------------------  530 (1092)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~-~~~~~----------------------  530 (1092)
                      ..........++.+.|-.. ..+..-+..|.+.+.+.-...      ....+ ..+..                      
T Consensus       150 k~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~  228 (1062)
T KOG1912|consen  150 KYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY  228 (1062)
T ss_pred             ccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence            8776666777787776644 344444455555555432111      11111 11100                      


Q ss_pred             ---ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC--CEEEEEeCCCcEEEE
Q 001362          531 ---GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIW  605 (1092)
Q Consensus       531 ---~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~s~dg~i~iw  605 (1092)
                         -...++|+|.-+.++.....+    .+.++|++-..++....-..   +.+.-+.+-|++  ..+++.-.||.+.+|
T Consensus       229 fity~a~faf~p~~rn~lfi~~pr----ellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~ltir  301 (1062)
T KOG1912|consen  229 FITYCAQFAFSPHWRNILFITFPR----ELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTIR  301 (1062)
T ss_pred             HHHHHHhhhcChhhhceEEEEecc----ceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEEE
Confidence               012356677655444444322    39999999888887777655   666667777664  578999999999999


Q ss_pred             ECCCC----------------ceEEEEeCCCCCCCCceEEEccC-CCEEEEEeCCCeEEEEECCCCceeeecc-------
Q 001362          606 DMNKV----------------QLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAAG-------  661 (1092)
Q Consensus       606 d~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------  661 (1092)
                      -.+..                .....+..-.. ..+...+..|. ...+++...+|...+|.+.+++......       
T Consensus       302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~-~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~  380 (1062)
T KOG1912|consen  302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEE-FRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV  380 (1062)
T ss_pred             EeeccCccccccchhhccccccceEEEeechh-cccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence            76542                11111111111 11222333343 4556666677888899888653321111       


Q ss_pred             ------------------------cccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccc
Q 001362          662 ------------------------VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1092)
Q Consensus       662 ------------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~  717 (1092)
                                              +|.....+....|.....-+....    +......--.+++.|...|+|.++|+.+
T Consensus       381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p----~~n~~~~~~pLvAvGT~sGTV~vvdvst  456 (1062)
T KOG1912|consen  381 LPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDP----GGNTPAGTVPLVAVGTNSGTVDVVDVST  456 (1062)
T ss_pred             ccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCC----CCCccceeeeeEEeecCCceEEEEEecc
Confidence                                    111222222222211111000000    0000011124578899999999999876


Q ss_pred             ccCccccccccCCccccccEEEEEEecCCcEEEEeecC--CeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeec
Q 001362          718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND  795 (1092)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~  795 (1092)
                      +.......+      |...|.++.|......+-.+.+.  ..-.+               -.+.+.+-++.+|.......
T Consensus       457 ~~v~~~fsv------ht~~VkgleW~g~sslvSfsys~~n~~sg~---------------vrN~l~vtdLrtGlsk~fR~  515 (1062)
T KOG1912|consen  457 NAVAASFSV------HTSLVKGLEWLGNSSLVSFSYSHVNSASGG---------------VRNDLVVTDLRTGLSKRFRG  515 (1062)
T ss_pred             hhhhhhhcc------cccceeeeeeccceeEEEeeeccccccccc---------------eeeeEEEEEccccccccccc
Confidence            554444433      88999999998887754433321  00000               01234455666666444433


Q ss_pred             CCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEc-CC---------------CCCE
Q 001362          796 TTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------DNNV  858 (1092)
Q Consensus       796 l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------d~~~  858 (1092)
                      +++ ..+.+|+.+..|.-|+|++..- +.-+.+||+++..+++...-.-..++.++|+ |.               ..+.
T Consensus       516 l~~-~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~  594 (1062)
T KOG1912|consen  516 LQK-PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENL  594 (1062)
T ss_pred             CCC-CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhce
Confidence            333 5788999999999999999997 6779999998877766554444458888887 31               1123


Q ss_pred             EEEEeCCCcEEEEEcCC-------cee-eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001362          859 IAIGMDDSTILIYNARS-------SEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD  930 (1092)
Q Consensus       859 lasg~~dg~v~iwd~~~-------~~~-~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~  930 (1092)
                      ++..+  +..+++.+.-       +.. ....+.....+..++|  .+..|+.|..+|.+.+||+.......   .....
T Consensus       595 vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg---~~d~p  667 (1062)
T KOG1912|consen  595 VVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG---VRDSP  667 (1062)
T ss_pred             eeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC---ccCCC
Confidence            33333  2333333321       111 1111111223344666  46699999999999999987632111   11111


Q ss_pred             CCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCC--CCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001362          931 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       931 ~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
                      .+.   .......+-|.....++-...-+-+||.+....+..+ .+.  +..+..+.+......++  ..|.++|+-.+.
T Consensus       668 ~~r---a~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~  741 (1062)
T KOG1912|consen  668 DPR---AHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMP  741 (1062)
T ss_pred             Cch---hhheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceec--CCCCceeEEecc
Confidence            111   1233344455433444445566889999887777664 333  33444455544444333  345577776665


Q ss_pred             CCce
Q 001362         1009 NLEV 1012 (1092)
Q Consensus      1009 ~~~~ 1012 (1092)
                      ....
T Consensus       742 mks~  745 (1062)
T KOG1912|consen  742 MKSP  745 (1062)
T ss_pred             ccCC
Confidence            5443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.81  E-value=2.9e-18  Score=167.10  Aligned_cols=409  Identities=11%  Similarity=0.118  Sum_probs=260.1

Q ss_pred             EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001362          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      -+.|||+|+|+|+++.- .+.|=|.++-+..+..    .--..|..+.|..|... .+.....|+.|.+|++...+--..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence            46899999999999776 6888888775443311    12346888999999885 566778899999999999998888


Q ss_pred             EecCCcCeEEEeecccCCc-cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001362          481 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       481 ~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                      +.....++.+++|+|  || ++|.+...|-+|.+|.+.+...... ......+..++|+|||++.+.++.. +-...+.+
T Consensus        87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i  162 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI  162 (447)
T ss_pred             eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence            988889999999965  55 6777888899999999988665443 3344566889999999999988642 22223333


Q ss_pred             EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001362          560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV  639 (1092)
Q Consensus       560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  639 (1092)
                      ..-.....++.+....   ...+.+.|+|||+.+++         ||.--.-.+.....  + -.+..++|+|.++++++
T Consensus       163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laV---------wd~~Leykv~aYe~--~-lG~k~v~wsP~~qflav  227 (447)
T KOG4497|consen  163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYER--G-LGLKFVEWSPCNQFLAV  227 (447)
T ss_pred             HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEE---------ecchhhheeeeeee--c-cceeEEEeccccceEEe
Confidence            3333344455555544   56778899999987765         43221111111111  1 24788999999999999


Q ss_pred             EeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc
Q 001362          640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  719 (1092)
Q Consensus       640 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~  719 (1092)
                      |+.|+.+++.+--+-+.+..+-. -.                                      +-.|.+..+-..+..+
T Consensus       228 GsyD~~lrvlnh~tWk~f~eflh-l~--------------------------------------s~~dp~~~~~~ke~~~  268 (447)
T KOG4497|consen  228 GSYDQMLRVLNHFTWKPFGEFLH-LC--------------------------------------SYHDPTLHLLEKETFS  268 (447)
T ss_pred             eccchhhhhhceeeeeehhhhcc-ch--------------------------------------hccCchhhhhhhhhcc
Confidence            99999999977554433322210 00                                      0001110000000000


Q ss_pred             CccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCC
Q 001362          720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS  799 (1092)
Q Consensus       720 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~  799 (1092)
                      .            -.-...++.|.|..-         ...+|......+.   .......+....+.+       +.  +
T Consensus       269 ~------------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE---~~~~pv~~~~lkp~t-------D~--p  315 (447)
T KOG4497|consen  269 I------------VQLLHHCLSFTPTDL---------EAHIWEESETIYE---QQMTPVKVHKLKPPT-------DF--P  315 (447)
T ss_pred             h------------hhhcccccccCCCcc---------ccCccccchhhhh---hhhcceeeecccCCC-------CC--C
Confidence            0            001122344444321         1111111100000   000000000001111       11  1


Q ss_pred             CCCCCeeEEEEecCCCEEEEEeC---CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001362          800 NSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  876 (1092)
Q Consensus       800 ~~~~~v~~~~~s~dg~~l~~~sd---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  876 (1092)
                      +..-.+.-++||+|..++++-.|   +.+.+||++..+....+. ...+|.+..|.| ....|+.......+++|.....
T Consensus       316 nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~  393 (447)
T KOG4497|consen  316 NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGP  393 (447)
T ss_pred             CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCc
Confidence            23456778999999999999986   569999998776655443 556899999999 7778888877788999988765


Q ss_pred             eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCc
Q 001362          877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ  909 (1092)
Q Consensus       877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~  909 (1092)
                      .++.. .+..-.|..+.|.-+|..++-.+.|.-
T Consensus       394 ~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  394 RVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             eEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence            55443 334467999999999999999998873

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.81  E-value=3.6e-18  Score=169.84  Aligned_cols=265  Identities=16%  Similarity=0.205  Sum_probs=186.2

Q ss_pred             ecccCCCCceEEeecCCCc-eEEEEEcCCCcEEEEecCCCC-eeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001362          329 TLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~-~llasg~~d~~v~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      ...+|.+.+..+.-++-|+ .++|+=+..|.|.|||+..-- .+..-.+.+-+  ...+++  ..+.+|...=..++|||
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~--s~~~Pl--~t~~ghk~EGy~LdWSp  221 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD--SEFRPL--FTFNGHKGEGYGLDWSP  221 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc--cccCce--EEecccCccceeeeccc
Confidence            3456777888888887653 356777778999999985321 11100111111  001122  23778999999999999


Q ss_pred             C-CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC---ceeEEEe
Q 001362          407 D-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFE  482 (1092)
Q Consensus       407 d-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~~  482 (1092)
                      - -..|++|.-.+.|++|...+|.-..-...+.+|+..|-.++|||..+. +|+|||-||+|+|||++.+   .++.+ +
T Consensus       222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~-k  299 (440)
T KOG0302|consen  222 IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVST-K  299 (440)
T ss_pred             ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEe-e
Confidence            2 234778877778999999987644333357789999999999998877 8999999999999999988   33433 8


Q ss_pred             cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001362          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                      .|...|+.+.|+..  -.+|++|+.||+++|||++..   +++..++.|..+|+++.|+|...-.+.++.   .+.+|.+
T Consensus       300 Ah~sDVNVISWnr~--~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~Qiti  374 (440)
T KOG0302|consen  300 AHNSDVNVISWNRR--EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQITI  374 (440)
T ss_pred             ccCCceeeEEccCC--cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCCcEEE
Confidence            89999999999654  349999999999999999864   456789999999999999996654444332   2778999


Q ss_pred             EeCCCCeE--------E--------EEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 001362          560 WNESEGAI--------K--------RTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWD  606 (1092)
Q Consensus       560 wd~~~~~~--------~--------~~~~~~~~~~~~v~~~~~~p~~-~~l~~~s~dg~i~iwd  606 (1092)
                      ||+..-.-        .        +.+-.|. ....+.-+.|++.- .++++.+.|| +.||.
T Consensus       375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             EEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            99853211        0        1112222 12467778888874 4566666776 44543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.80  E-value=3.7e-18  Score=169.71  Aligned_cols=250  Identities=15%  Similarity=0.171  Sum_probs=185.0

Q ss_pred             CCCCCeeEEEEecCCCEEEEE--eC-CeEEEEEcCC----------------ceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001362          800 NSQEAVPCFALSKNDAYLFSA--SG-GVISLYIVMT----------------FKTILTIMPPSPTATSLAFNPHDNNVIA  860 (1092)
Q Consensus       800 ~~~~~v~~~~~s~dg~~l~~~--sd-g~i~iwd~~~----------------~~~~~~~~~~~~~i~~l~~s~~d~~~la  860 (1092)
                      +|.+.+..+..++-++-.+++  ++ |.|.||++..                .+.+.++.+|...-.+++|||...-.|+
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            477778888777765444444  44 9999999742                3456778899999999999995555688


Q ss_pred             EEeCCCcEEEEEcCCcee---eEeeccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001362          861 IGMDDSTILIYNARSSEV---ISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  936 (1092)
Q Consensus       861 sg~~dg~v~iwd~~~~~~---~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  936 (1092)
                      +|.--+.|++|...+|.-   ...+.+|+..|..|+|||. ...|||||.||+|+|||+..+........   ..|..  
T Consensus       229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~---kAh~s--  303 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST---KAHNS--  303 (440)
T ss_pred             cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---eccCC--
Confidence            888889999999988752   3556789999999999995 57899999999999999998755443333   23332  


Q ss_pred             CCceEEEEecCCCEEEEE-eCCcEEEEEcCC---ceeeeeeccCCCCCEEEEEEecC-CCEEEEEECCCcEEEEEcCCCc
Q 001362          937 PSETHIQFHKDQTRFLLV-HETHLAIYEAEE---LTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       937 ~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~---~~~~~~~~~~h~~~v~~l~fs~d-g~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
                       .|..+.|+.+-.+||+| .||+++|||+++   ++.+.. +.-|..+|+++.|+|. ...|+++|.|..|.+||+....
T Consensus       304 -DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~-fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  304 -DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT-FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             -ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee-EEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence             69999999999999984 779999999974   445555 5679999999999984 5678888899999999987543


Q ss_pred             e---EEee--ccccccCCCC---ccCcccceEEEECCCCCCEEEEEeCCCcEE
Q 001362         1012 V---QCRI--LSTAYLRPTT---SCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1056 (1092)
Q Consensus      1012 ~---~~~~--~~~~~~~~~~---~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~ 1056 (1092)
                      -   ....  .....+|++.   |.+.-..-.+.||++-+.++++.+.||.-.
T Consensus       382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnV  434 (440)
T KOG0302|consen  382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNV  434 (440)
T ss_pred             ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeE
Confidence            2   0000  0011233321   222212225679999899999999999633

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.80  E-value=4.3e-18  Score=170.20  Aligned_cols=237  Identities=16%  Similarity=0.272  Sum_probs=187.4

Q ss_pred             eecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCc----ccceEEEcccccceeEEEEecCCCcEEEEEEeCCC
Q 001362          391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  465 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~  465 (1092)
                      +..||+++|..++|+| +...||+||.|.+|.||.+-.+..    ......+.||...|--++|+|.... .|+|++.|.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn  154 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN  154 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence            4789999999999999 778999999999999999876543    2345578999999999999999877 789999999


Q ss_pred             cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-ceEEEEEccCCCEE
Q 001362          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRL  544 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l  544 (1092)
                      +|.+||+.+|+.+.++. |.+.|.+++|+  .||.++++.+.|+.|||||.++++....-..|.+ .-..+.|-.+|. +
T Consensus       155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i  230 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I  230 (472)
T ss_pred             eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence            99999999999999987 99999999995  4788999999999999999999988887766654 455677888898 6


Q ss_pred             EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce-EEEEeCCCCC
Q 001362          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL-LTTIDAGGGL  622 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~-~~~~~~~~~~  622 (1092)
                      ++.+.++-.+.++-+||..+-+.-..+.... ..+.|.--.+.++.+.++.++ .|+.||.|.+....+ +..+..-...
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~  309 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK  309 (472)
T ss_pred             eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence            6767777778999999987654433332222 135677777889988886654 899999999987653 3333322223


Q ss_pred             CCCceEEEccC
Q 001362          623 PENPRICFNKN  633 (1092)
Q Consensus       623 ~~v~~v~~s~~  633 (1092)
                      ..-..+.|-|.
T Consensus       310 epQRG~g~mPK  320 (472)
T KOG0303|consen  310 EPQRGMGFMPK  320 (472)
T ss_pred             Ccccccccccc
Confidence            34466777664

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.80  E-value=1.4e-17  Score=162.20  Aligned_cols=289  Identities=14%  Similarity=0.196  Sum_probs=206.3

Q ss_pred             eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC-------CCCCE
Q 001362          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-------PDGSL  410 (1092)
Q Consensus       338 ~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s-------pdg~~  410 (1092)
                      ..+.|||||.. +.+-+.|..+.+|++...-.-.....+.      ..+.+..+-......|...+|-       |+..+
T Consensus        53 kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~~------~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l  125 (406)
T KOG2919|consen   53 KGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGPL------NFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL  125 (406)
T ss_pred             ccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCcc------ccccceeEEeccCCEEEEEEeeeccccCCCccce
Confidence            35689999985 6667889999999985321111000000      0000000111133567777765       67889


Q ss_pred             EEEEeCCCEEEEEEccCCCcccceEEEccccc---ceeEEEEecCCCcEEEEEEeCCCcEEEEEC-CCCcee--EEE---
Q 001362          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSF---  481 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~---~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~-~~~~~~--~~~---  481 (1092)
                      +|+.+.+.-|++||.-+|+...... .-.|..   ...+++|+|||.  .|+ ++....|+++|+ +.|+.-  +..   
T Consensus       126 ~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlf-aGykrcirvFdt~RpGr~c~vy~t~~~  201 (406)
T KOG2919|consen  126 FAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLF-AGYKRCIRVFDTSRPGRDCPVYTTVTK  201 (406)
T ss_pred             eeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEe-ecccceEEEeeccCCCCCCcchhhhhc
Confidence            9999999999999999998654322 123444   346899999999  455 455789999998 455432  211   


Q ss_pred             --ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001362          482 --EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       482 --~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                        .+..+.+.+++|+|. +...++.|+...++-++.....++...+.+|++.|+.+.|.+||+.|++++.   .+..|..
T Consensus       202 ~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl~  277 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKILC  277 (406)
T ss_pred             ccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEEE
Confidence              233677888899886 4468999999999999999999999999999999999999999999999875   3556999


Q ss_pred             EeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCCCceEEEccCCCEE
Q 001362          560 WNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLL  637 (1092)
Q Consensus       560 wd~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l  637 (1092)
                      ||++. +..+..+..|....+.-......|++++|++|+.||.|++||+.+ |..+..+..+.  .-++.++++|--.++
T Consensus       278 WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--d~vNgvslnP~mpil  355 (406)
T KOG2919|consen  278 WDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--DTVNGVSLNPIMPIL  355 (406)
T ss_pred             EeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc--ccccceecCccccee
Confidence            99974 556666666662112222345678899999999999999999998 66566655443  348899999998888


Q ss_pred             EEEeCC
Q 001362          638 AVIANE  643 (1092)
Q Consensus       638 ~~~~~d  643 (1092)
                      |+++..
T Consensus       356 atssGq  361 (406)
T KOG2919|consen  356 ATSSGQ  361 (406)
T ss_pred             eeccCc
Confidence            887764

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=3.4e-17  Score=164.87  Aligned_cols=300  Identities=14%  Similarity=0.187  Sum_probs=213.5

Q ss_pred             cccEEEEEEecCCc-EEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001362          734 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       734 ~~~i~~l~~s~~g~-~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      ..++..+.|.+++. .+++++.|..|++|.+........+               ......-.+.  .|...|+++.|+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls--~H~~aVN~vRf~p   75 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLS--RHTRAVNVVRFSP   75 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeeccc--CCcceeEEEEEcC
Confidence            45788899988877 8999999999999998765321110               0112222333  3999999999999


Q ss_pred             CCCEEEEEeC-CeEEEEEcC--------C--------ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC
Q 001362          813 NDAYLFSASG-GVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS  875 (1092)
Q Consensus       813 dg~~l~~~sd-g~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~  875 (1092)
                      +|.+||+|+| |.+.+|-..        +        +...+.+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus        76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~  154 (434)
T KOG1009|consen   76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA  154 (434)
T ss_pred             CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence            9999999985 889999765        2        344567888999999999999 999999999999999999999


Q ss_pred             ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee---eecCCCCcC------------CCCCce
Q 001362          876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQTPDGVMT------------LAPSET  940 (1092)
Q Consensus       876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~~~~~~~~------------~~~~v~  940 (1092)
                      |+....+.+|...|..++|.|-++++++-+.|...+++.+.........-   +....+...            ...-..
T Consensus       155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr  234 (434)
T KOG1009|consen  155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR  234 (434)
T ss_pred             ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence            99999999999999999999999999999999877777665432211100   000000000            002356


Q ss_pred             EEEEecCCCEEEEE-----eCC-----cEEEEEcCCceeeeeeccCCCCCEEEEEEec--------CC---------CEE
Q 001362          941 HIQFHKDQTRFLLV-----HET-----HLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC---------RMV  993 (1092)
Q Consensus       941 ~l~~s~dg~~la~~-----~d~-----~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg---------~~l  993 (1092)
                      .++|+|||.+|++.     ..+     ..++|+-...+.....+++-..++..+.|+|        +.         +++
T Consensus       235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv  314 (434)
T KOG1009|consen  235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV  314 (434)
T ss_pred             hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence            78999999999982     222     3456654433322222444466666777766        11         233


Q ss_pred             EEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001362          994 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus       994 ~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      +.......|+|||.++...++.....-|       ..+.  .++|++ |+..++..+.||-..+--+.
T Consensus       315 faiAt~~svyvydtq~~~P~~~v~nihy-------~~iT--Diaws~-dg~~l~vSS~DGyCS~vtfe  372 (434)
T KOG1009|consen  315 FAIATKNSVYVYDTQTLEPLAVVDNIHY-------SAIT--DIAWSD-DGSVLLVSSTDGFCSLVTFE  372 (434)
T ss_pred             EEEeecceEEEeccccccceEEEeeeee-------eeec--ceeecC-CCcEEEEeccCCceEEEEEc
Confidence            3333456899999999888877663332       2333  788998 68999999999977665553

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.79  E-value=9.8e-18  Score=163.28  Aligned_cols=190  Identities=16%  Similarity=0.196  Sum_probs=150.0

Q ss_pred             eeEEEEecCCCEEEEEeCCeEEEEEc-CCceeeE---Ee----cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001362          805 VPCFALSKNDAYLFSASGGVISLYIV-MTFKTIL---TI----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  876 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~sdg~i~iwd~-~~~~~~~---~~----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  876 (1092)
                      ..+++|+|||..|..|....|+++|+ ..|..-.   ++    .+..+-+.+++|+|.+...+|+|+....+-||.-..+
T Consensus       161 AhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~  240 (406)
T KOG2919|consen  161 AHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR  240 (406)
T ss_pred             heeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence            45899999999999999999999999 4443211   11    1235678999999988889999999999999999999


Q ss_pred             eeeEeeccccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-
Q 001362          877 EVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-  954 (1092)
Q Consensus       877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-  954 (1092)
                      .++..+-+|.+.|+.+.|.+||+.|.+|++ |-.|..||+....    .++-.+..|......-......|+|++|++| 
T Consensus       241 ~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~  316 (406)
T KOG2919|consen  241 RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGEILASGD  316 (406)
T ss_pred             CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCCceeeccC
Confidence            999999999999999999999999999885 6679999998633    2333333333211122334558999999996 


Q ss_pred             eCCcEEEEEcCC-ceeeeeeccCCCCCEEEEEEecCCCEEEEEECC
Q 001362          955 HETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSFVD  999 (1092)
Q Consensus       955 ~d~~i~lwd~~~-~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D  999 (1092)
                      .||.|++||+++ |..+.. ...|+..+..+++.|-=.+++|++..
T Consensus       317 tdG~V~vwdlk~~gn~~sv-~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  317 TDGSVRVWDLKDLGNEVSV-TGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             CCccEEEEecCCCCCcccc-cccccccccceecCcccceeeeccCc
Confidence            899999999988 665554 55689999999999987778877654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=2.1e-16  Score=163.95  Aligned_cols=496  Identities=14%  Similarity=0.126  Sum_probs=297.9

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEccccccee-EEEEe-----c--CCCcEEEEEEeCCC
Q 001362          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFS-----A--PCKQISVITCGDDK  465 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~s-----~--d~~~l~l~s~~~d~  465 (1092)
                      .|...|.|+.|+.+...+.+++++..+.-||+.+.+. ... .+  ...-|. .+..-     .  ...  .++.++.||
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~-~~--p~df~pt~~h~~~rs~~~g~~~d--~~~i~s~DG   85 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA-KL--PDDFVPTDMHLGGRSSGGGKGSD--TLLICSNDG   85 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhh-hC--CcccCCccccccccccCCCCCcc--eEEEEcCCc
Confidence            3677788999998887777776665555556554322 111 11  111111 11110     0  122  577888899


Q ss_pred             cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001362          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      .+.|-+ +.++.-+.+..|.+.+.+-.|++  ||.-|++++.||.|++|.- ++-...++.....+|.|++|.|+.+.++
T Consensus        86 kf~il~-k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl  161 (737)
T KOG1524|consen   86 RFVILN-KSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIV  161 (737)
T ss_pred             eEEEec-ccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceE
Confidence            999998 88888889999999999999954  6778999999999999963 3333334555667899999999998888


Q ss_pred             EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCC
Q 001362          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1092)
                      .|.     .+.+++=.+.....+-..+.|.   +-|.++.|++..+.+++|++|-..+|||... ..+..-..|.  .+|
T Consensus       162 ~c~-----g~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~e--y~I  230 (737)
T KOG1524|consen  162 FCQ-----GGHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEE--YAI  230 (737)
T ss_pred             Eec-----CCeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeecccC-cccccCChhc--cce
Confidence            775     3347777777666677778877   9999999999999999999999999999754 4444444343  469


Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec
Q 001362          626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  705 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  705 (1092)
                      ++++|.|+ +.+++++.+ ++++   .                                                     
T Consensus       231 TSva~npd-~~~~v~S~n-t~R~---~-----------------------------------------------------  252 (737)
T KOG1524|consen  231 TSVAFNPE-KDYLLWSYN-TARF---S-----------------------------------------------------  252 (737)
T ss_pred             eeeeeccc-cceeeeeee-eeee---c-----------------------------------------------------
Confidence            99999999 667766653 3331   0                                                     


Q ss_pred             cccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEee-cCCCcCcCcccccccCCcccc
Q 001362          706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW-PRNDLTLSTEATTKVPPRLYQ  784 (1092)
Q Consensus       706 ~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~-~~~~~~~~~~~~~~~~~~~w~  784 (1092)
                                               ....+.|..++||+||..+++++..|.+.+=-. +..                  
T Consensus       253 -------------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~------------------  289 (737)
T KOG1524|consen  253 -------------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQ------------------  289 (737)
T ss_pred             -------------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhh------------------
Confidence                                     013456788899999999988888887654110 000                  


Q ss_pred             CCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 001362          785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM  863 (1092)
Q Consensus       785 ~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~  863 (1092)
                                 +        +       -+.+=++. ....|.+-|+.++.+  ..-.....+...+++-  + +|+++.
T Consensus       290 -----------l--------~-------~~n~~~t~~~r~~I~vrdV~~~v~--d~LE~p~rv~k~sL~Y--~-hLvvaT  338 (737)
T KOG1524|consen  290 -----------L--------V-------SGNLKATSKSRKSITVRDVATGVQ--DILEFPQRVVKFSLGY--G-HLVVAT  338 (737)
T ss_pred             -----------h--------h-------hccceeEeeccceEEeehhhhhHH--HHhhCccceeeeeece--e-EEEEEe
Confidence                       0        0       00111111 234566666665543  2222445666666654  3 333333


Q ss_pred             CCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEE
Q 001362          864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  943 (1092)
Q Consensus       864 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  943 (1092)
                       ...|++|.-........+.+....+.-+.-+ ...+++  ....+|.++..+......    ..+++...  .....=.
T Consensus       339 -s~qvyiys~knwntpiiidgre~tr~lieq~-ek~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rt  408 (737)
T KOG1524|consen  339 -SLQVYIYSEKNWNTPIIIDGREDTRNLIEQG-EKYFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRT  408 (737)
T ss_pred             -ccEEEEEecCCccCcEEEeccccchhHhhhh-hhheEE--ecCcEEEEEEecCceecC----CCCCCccc--cccccee
Confidence             3468888766554444444444333222211 112222  233456666665422111    11111111  0111122


Q ss_pred             EecCCCEEEE--EeC-CcEEEEEc-CCceeeeeec-cCCCCCEEEEEEe----cCCCEEEEEECCCcEEEEEcCCCceEE
Q 001362          944 FHKDQTRFLL--VHE-THLAIYEA-EELTCLKQWF-PISSVPISQATFS----CDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1092)
Q Consensus       944 ~s~dg~~la~--~~d-~~i~lwd~-~~~~~~~~~~-~~h~~~v~~l~fs----~dg~~l~t~~~Dg~i~vwd~~~~~~~~ 1014 (1092)
                      .|-....|+.  ..| ..+.+||. .+|+....-. -.|...|..++..    ++++.++.-...+.+.|=.+.+.....
T Consensus       409 lsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee  488 (737)
T KOG1524|consen  409 LSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEE  488 (737)
T ss_pred             eecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchh
Confidence            3333444555  233 45889998 6666543211 2345556555553    355677777666777766655433322


Q ss_pred             eeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001362         1015 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1015 ~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
                      ++.-...          ....++|+  |...+++|-.|+.+.+|=.+...
T Consensus       489 ~I~KiGT----------mVhtLawn--dttNiLcglqDt~fsVWy~pn~v  526 (737)
T KOG1524|consen  489 EIYKIGT----------MVHTLAWN--DTTNILCGLQDTCFSVWYYPNEV  526 (737)
T ss_pred             hhhhhhh----------hhhhhhhc--cccceeeeeccceEEEEEcCCcc
Confidence            2221111          12346677  46789999999999999987644

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.8e-16  Score=170.13  Aligned_cols=563  Identities=15%  Similarity=0.157  Sum_probs=327.7

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC----------CCcEEEEEEeCCC
Q 001362          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDDK  465 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d----------~~~l~l~s~~~d~  465 (1092)
                      ...-.++.|+|.| +||.|+.. .|.+-|..+-+.++   .+.-|...|+.+.|.|-          ...++++++...|
T Consensus        15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             cccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence            3446778899876 77777665 48888888766555   67789999999999763          2456788999999


Q ss_pred             cEEEEECCCCceeEEEecCCcCeEEEeecccCCc--cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCC
Q 001362          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGR  542 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~  542 (1092)
                      .|.+||...+..+..+..|..++..++|.+..+.  ..|+......++.+|+..+++....+........++.+.| |.+
T Consensus        90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r  169 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR  169 (1062)
T ss_pred             cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence            9999999999999999999999999999876554  4778888889999999999999888877776777788888 444


Q ss_pred             EEEEEecCCCCceeEEEEeCC-------CCeEEEEEeeccc----------------cCCc------eEEEEEcCCCCEE
Q 001362          543 RLFSCGTSKEGESFLVEWNES-------EGAIKRTYQGLQL----------------QHNS------VSVVHFDTAKDQI  593 (1092)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~----------------~~~~------v~~~~~~p~~~~l  593 (1092)
                      .+...+.    .+.+.+-+.-       .|+..+.-..|..                ....      ...++|+|.-+.+
T Consensus       170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~  245 (1062)
T KOG1912|consen  170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI  245 (1062)
T ss_pred             eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence            4444332    3334443321       1222222221110                0000      1124667876666


Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC--CEEEEEeCCCeEEEEECCCCceeeec-----c-cccC
Q 001362          594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPESNSVDAA-----G-VLSD  665 (1092)
Q Consensus       594 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~-----~-~~~~  665 (1092)
                      +-......+.++|++-..++.....+.+.  +.-+.+-|++  ..|.+...||.+.+|-.+.-......     . ....
T Consensus       246 lfi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~  323 (1062)
T KOG1912|consen  246 LFITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGE  323 (1062)
T ss_pred             EEEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhcccccc
Confidence            66667788999999999999888876553  4556666654  57899999999999987642111111     0 0011


Q ss_pred             ceeeeeecCCCccccccccCCceeecCCCCCC-CccceeeccccccceeccccccCccccccccCCccccccEEEEEEec
Q 001362          666 NLRKLSVNPISTVTGAGIANGSVSVNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN  744 (1092)
Q Consensus       666 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  744 (1092)
                      .+.++.  +.....         .+.+...|. ...++.--.+|...+|++..+.........     ...-+..+.|..
T Consensus       324 Q~~~vr--~m~~~r---------p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~-----~iel~~pf~f~~  387 (1062)
T KOG1912|consen  324 QVHVVR--PMEEFR---------PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS-----SIELVLPFDFNL  387 (1062)
T ss_pred             ceEEEe--echhcc---------cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc-----cccccccccccC
Confidence            111111  111000         000000122 333444445677778887632211110000     000000111110


Q ss_pred             CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCe
Q 001362          745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGV  824 (1092)
Q Consensus       745 ~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~  824 (1092)
                      ...           .+..                 ..         +......+ +|.....+....|-.++-       
T Consensus       388 ~~~-----------~v~k-----------------~~---------l~~LS~dg-~h~sGs~~~~~~p~p~~t-------  422 (1062)
T KOG1912|consen  388 STK-----------LVGK-----------------TS---------LISLSDDG-SHSSGSTCVRMRPMPELT-------  422 (1062)
T ss_pred             cee-----------ehhh-----------------cc---------ccchhhcC-CCCCCceeeecccCcccc-------
Confidence            000           0000                 00         00000000 133333333332211110       


Q ss_pred             EEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE
Q 001362          825 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS  904 (1092)
Q Consensus       825 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~  904 (1092)
                                  .+...+.+. +....-|    ++|.|...|+|.++|+.++..-+.+..|+..|.++.|-.... |++.
T Consensus       423 ------------~~~~~p~~n-~~~~~~p----LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSf  484 (1062)
T KOG1912|consen  423 ------------KVENDPGGN-TPAGTVP----LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSF  484 (1062)
T ss_pred             ------------eeecCCCCC-ccceeee----eEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEe
Confidence                        011111111 1122233    899999999999999999999999999999999999976543 3333


Q ss_pred             e----------CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeeee
Q 001362          905 G----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQW  973 (1092)
Q Consensus       905 s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~  973 (1092)
                      +          .-+.+.|-|+.+|..+..+-++..+.     .+|..+..|.-|++|++. .+.-+.+||+.+..+++..
T Consensus       485 sys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~de-----spI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~m  559 (1062)
T KOG1912|consen  485 SYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDE-----SPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLM  559 (1062)
T ss_pred             eeccccccccceeeeEEEEEcccccccccccCCCCCc-----CcceeeeecccCceEEEEecccchHHHhhccchHHHHH
Confidence            2          23457788998876444333333322     479999999999999994 7788999999887776542


Q ss_pred             ccCCCCC-EEEEEEe-cC----------------CCEEEEEECCCcEEEEEcCCCceEEe-ecc-ccccCCCCccCcccc
Q 001362          974 FPISSVP-ISQATFS-CD----------------CRMVFTSFVDGTLSIHEASNLEVQCR-ILS-TAYLRPTTSCLHVYP 1033 (1092)
Q Consensus       974 ~~~h~~~-v~~l~fs-~d----------------g~~l~t~~~Dg~i~vwd~~~~~~~~~-~~~-~~~~~~~~~~~~v~~ 1033 (1092)
                      -  -.-+ ++.+.|+ |.                .+..++.+.|.  +++.+.......+ ... .....    .....-
T Consensus       560 S--~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es--~~~~~~~~a~~~sdgsq~~~a~e----sfafal  631 (1062)
T KOG1912|consen  560 S--LALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVES--RIYHITLSALVVSDGSQVNTAWE----SFAFAL  631 (1062)
T ss_pred             h--hcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccc--hheehhhhhhhhccccchhhHHH----HHHHHH
Confidence            2  2344 8889998 32                12334333232  3333222111100 000 00000    000112


Q ss_pred             eEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001362         1034 HAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1034 ~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
                      ++++|-   +..++.|..+|.+.+||+.-.+
T Consensus       632 ~~mAwk---~d~lv~GD~~GNl~~WDlg~R~  659 (1062)
T KOG1912|consen  632 CAMAWK---DDILVVGDVEGNLVVWDLGRRQ  659 (1062)
T ss_pred             Hhhhcc---CCeeEeecccCceeEEeccccc
Confidence            346666   4799999999999999975443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=8.4e-18  Score=171.19  Aligned_cols=254  Identities=13%  Similarity=0.179  Sum_probs=185.3

Q ss_pred             CceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeeccccc------ceeeEeeecCCCCcEEEEEECCC-CCEEEEEeCCC
Q 001362          346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS------MLFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKH  418 (1092)
Q Consensus       346 g~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~------~~~~~~~l~~h~~~V~~l~~spd-g~~las~~~d~  418 (1092)
                      |+ ++|.|+.|..|.|||+.--..+.    +..-+....      ..-+.....+|+..|.+++|+.+ ...||+||.|.
T Consensus       192 gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~  266 (463)
T KOG0270|consen  192 GN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK  266 (463)
T ss_pred             cc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence            55 79999999999999986432221    000000000      00012235589999999999985 56789999999


Q ss_pred             EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCC
Q 001362          419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN  498 (1092)
Q Consensus       419 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  498 (1092)
                      +|++||+.+|++..   ++..|.+.|.+++|+|.... +|++|+.|++|.+.|.+........-...+.|-.++|.+...
T Consensus       267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se  342 (463)
T KOG0270|consen  267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE  342 (463)
T ss_pred             eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc
Confidence            99999999998776   67789999999999998776 899999999999999885333322222567788899987643


Q ss_pred             ccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc
Q 001362          499 IHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ  577 (1092)
Q Consensus       499 ~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~  577 (1092)
                       ..++++..||+++-+|++.. ++..++..|..+|.++++++.-..+++.+   ..++.|.+|+...-... ....|...
T Consensus       343 -~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~---s~d~~Vklw~~~~~~~~-~v~~~~~~  417 (463)
T KOG0270|consen  343 -NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA---STDKVVKLWKFDVDSPK-SVKEHSFK  417 (463)
T ss_pred             -eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec---cccceEEEEeecCCCCc-cccccccc
Confidence             57888899999999999987 67889999999999999999776655443   23778999998644331 12222222


Q ss_pred             CCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceE
Q 001362          578 HNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLL  613 (1092)
Q Consensus       578 ~~~v~~~~~~p~~~~l-~~~s~dg~i~iwd~~~~~~~  613 (1092)
                      -+...|.++.|+-..+ +.|+..+.++|||+.+...+
T Consensus       418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            2456777888886655 45777788999999876543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.78  E-value=7.2e-19  Score=191.29  Aligned_cols=284  Identities=19%  Similarity=0.293  Sum_probs=220.0

Q ss_pred             eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001362          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      ++.|.||...|.|+.|...|. ++++|+.|..|+||..+++.++..                   +.||.+.|+.++.+.
T Consensus       183 ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~  242 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSS  242 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccch
Confidence            356889999999999999998 689999999999999999999876                   889999999999999


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE---Eec
Q 001362          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FEG  483 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~---~~~  483 (1092)
                      +..++|+++.|..|++|.+.++..+.   .+.+|++.|++++|+|-      .+.+.||++++||.+-.-.+..   +..
T Consensus       243 ~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~  313 (1113)
T KOG0644|consen  243 NNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKF  313 (1113)
T ss_pred             hhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCc
Confidence            99999999999999999999998776   67899999999999994      3688899999999871111111   011


Q ss_pred             -CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCC-EEEEEecCCCCceeEEEEe
Q 001362          484 -HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWN  561 (1092)
Q Consensus       484 -~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd  561 (1092)
                       ...-+.++.|  ..++..++|++.|+.-..|.+.-..      .+...+.-+.++.|-. +.+++-    .+..+.+|+
T Consensus       314 ~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwn  381 (1113)
T KOG0644|consen  314 TEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWN  381 (1113)
T ss_pred             ccccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeee----eeeEeeeee
Confidence             1123444444  4466778999999988888554211      1111122222222322 222222    266789999


Q ss_pred             CCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001362          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI  640 (1092)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  640 (1092)
                      +.+|.+.+.+.+|.   ..+..+.++|-+..+ .+++.||...|||+-.|..++..... + ..+....||++|..++..
T Consensus       382 l~~g~l~H~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~ls  456 (1113)
T KOG0644|consen  382 LYTGQLLHNLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALS  456 (1113)
T ss_pred             cccchhhhhhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecC
Confidence            99999999999988   899999999987766 45899999999999999888776633 2 346788999999999999


Q ss_pred             eCCCeEEEEECCCCce
Q 001362          641 ANENRIKILETPESNS  656 (1092)
Q Consensus       641 ~~dg~i~iw~~~~~~~  656 (1092)
                      ..-|.++|.....+..
T Consensus       457 d~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  457 DDHGQLYILGTGQSKS  472 (1113)
T ss_pred             CCCCceEEeccCCCcc
Confidence            8889999988776543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=1e-17  Score=167.48  Aligned_cols=239  Identities=15%  Similarity=0.182  Sum_probs=179.3

Q ss_pred             ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC-
Q 001362          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-  407 (1092)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd-  407 (1092)
                      ...||+++|..++|+|-....+|+||.|.+|.||++..+.......            -....|.||...|-.++|+|. 
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------epvv~L~gH~rrVg~V~wHPtA  143 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------EPVVELYGHQRRVGLVQWHPTA  143 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------cceEEEeecceeEEEEeecccc
Confidence            3579999999999999888899999999999999998765554321            112238999999999999995 


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001362          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      .+.|++++.|.+|.+||+.+|+.+.   ++. |...|.++.|+.||.  ++++.+.|+.|+|||..+++.+..-.+|.+.
T Consensus       144 ~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~heG~  217 (472)
T KOG0303|consen  144 PNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA  217 (472)
T ss_pred             hhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecccccCC
Confidence            5788899999999999999998665   455 999999999999999  8999999999999999999999888888764


Q ss_pred             eE-EEeecccCCccEEEEEe---cCCeEEEEEcCCCCceEEec--CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001362          488 VY-SLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1092)
Q Consensus       488 v~-~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1092)
                      -. .+.|  -.++.++.+|-   .+..+-+||....+....+.  .....|.---+.+|.+.++.++   .|++.|+.|.
T Consensus       218 k~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~G---KGD~~IRYyE  292 (472)
T KOG0303|consen  218 KPARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCG---KGDSSIRYFE  292 (472)
T ss_pred             CcceeEE--eccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEe---cCCcceEEEE
Confidence            32 2233  34556554443   46789999987766543222  2334566667889999999887   4688899999


Q ss_pred             CCCCeEEEEEeeccccCCceEEEEEcCCC
Q 001362          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAK  590 (1092)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  590 (1092)
                      +........+-..-....+-..+.|.|..
T Consensus       293 it~d~P~~hyln~f~S~epQRG~g~mPKR  321 (472)
T KOG0303|consen  293 ITNEPPFVHYLNTFSSKEPQRGMGFMPKR  321 (472)
T ss_pred             ecCCCceeEEecccccCCccccccccccc
Confidence            87655322111111112355566676653

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.78  E-value=4.2e-16  Score=161.76  Aligned_cols=498  Identities=12%  Similarity=0.175  Sum_probs=286.2

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCCCcEEEE-ecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLW-DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~v~iw-d~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  410 (1092)
                      .|+.-|.||.|+.+.. ++.+++ |..+.+| |+.+.+.. ...++-        .|..  ...|-.+- +..=-.....
T Consensus        12 r~~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~-~~~~p~--------df~p--t~~h~~~r-s~~~g~~~d~   77 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVE-VAKLPD--------DFVP--TDMHLGGR-SSGGGKGSDT   77 (737)
T ss_pred             ccceeEEeecccccce-EEEecc-CceEEEeecccchhhh-hhhCCc--------ccCC--cccccccc-ccCCCCCcce
Confidence            5666788999999987 555554 4555555 44433221 111100        0000  00010000 0000012357


Q ss_pred             EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEE
Q 001362          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS  490 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~  490 (1092)
                      ++.++.||.+.|-+-... .-+   ...+|.+.|.+-.|+|||.  -|++++.||.|++|. ++|-...++.....+|.|
T Consensus        78 ~~i~s~DGkf~il~k~~r-VE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c  150 (737)
T KOG1524|consen   78 LLICSNDGRFVILNKSAR-VER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRC  150 (737)
T ss_pred             EEEEcCCceEEEecccch-hhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEE
Confidence            888889998888775432 222   4678999999999999999  799999999999999 777766666667889999


Q ss_pred             EeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001362          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT  570 (1092)
Q Consensus       491 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  570 (1092)
                      ++|.|+.+ ..+++.  .+.+.+=-+.....+..+..|.+-|.++.|++..+.+++++.    +-...+||.. |..+..
T Consensus       151 ~~W~p~S~-~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~  222 (737)
T KOG1524|consen  151 ARWAPNSN-SIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFT  222 (737)
T ss_pred             EEECCCCC-ceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Cccccc
Confidence            99987654 344443  345566566777778889999999999999999999999986    6779999965 555555


Q ss_pred             EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001362          571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE  650 (1092)
Q Consensus       571 ~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~  650 (1092)
                      -..|.   .+|++++|+|+ +.++.++. +++|            +..+ ....|..++||+||..+++|+..|.+.+=.
T Consensus       223 S~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  223 SAAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             CChhc---cceeeeeeccc-cceeeeee-eeee------------ecCC-CccceEEEEEcCCCceeeccccCceEEEee
Confidence            55555   89999999999 55555553 3444            2211 234588999999999999999998876533


Q ss_pred             CCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCC
Q 001362          651 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS  730 (1092)
Q Consensus       651 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~  730 (1092)
                      .-..+...                                       +..-++......|.+-|+..+   .+..+.+| 
T Consensus       285 ~ieq~l~~---------------------------------------~n~~~t~~~r~~I~vrdV~~~---v~d~LE~p-  321 (737)
T KOG1524|consen  285 AIEQQLVS---------------------------------------GNLKATSKSRKSITVRDVATG---VQDILEFP-  321 (737)
T ss_pred             eehhhhhh---------------------------------------ccceeEeeccceEEeehhhhh---HHHHhhCc-
Confidence            32221110                                       111112222223333332211   11222222 


Q ss_pred             ccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001362          731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  810 (1092)
Q Consensus       731 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~  810 (1092)
                          ..+.....  .-..|+++.+. .+++|.-.                 -|++.     ..++.    .+..+.-+. 
T Consensus       322 ----~rv~k~sL--~Y~hLvvaTs~-qvyiys~k-----------------nwntp-----iiidg----re~tr~lie-  367 (737)
T KOG1524|consen  322 ----QRVVKFSL--GYGHLVVATSL-QVYIYSEK-----------------NWNTP-----IIIDG----REDTRNLIE-  367 (737)
T ss_pred             ----cceeeeee--ceeEEEEEecc-EEEEEecC-----------------CccCc-----EEEec----cccchhHhh-
Confidence                23333332  22334444333 45554311                 12211     01000    000000000 


Q ss_pred             ecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCC-----eEEEEEcCCCCCEEEEE--eCCCcEEEEEc-CCceeeEe-
Q 001362          811 SKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIG--MDDSTILIYNA-RSSEVISK-  881 (1092)
Q Consensus       811 s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~lasg--~~dg~v~iwd~-~~~~~~~~-  881 (1092)
                       ...+++.....-++.+|..+ |+.....+.+...     -..+.+.   ...|+.-  .....+.+||. .+|+.... 
T Consensus       368 -q~ek~fli~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLa---ndtLaird~ad~kvlhlFd~istgk~qgDg  442 (737)
T KOG1524|consen  368 -QGEKYFLILDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLA---NDTLAIRDNADPKVLHLFDLISTGKRQGDG  442 (737)
T ss_pred             -hhhhheEEecCcEEEEEEec-CceecCCCCCCcccccccceeeecc---cceEEeecCCCCeeEEeccCCCCCcccCCc
Confidence             01123333333556666654 2222222211111     1233333   2244432  23346788998 77765422 


Q ss_pred             -eccccCCeEEEEEc----CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeC
Q 001362          882 -LEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE  956 (1092)
Q Consensus       882 -l~~h~~~V~~l~~s----pdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d  956 (1092)
                       +-.|...|..++..    ++.+.++.....+.+.|=.+++-...        +.....+..|..++|+..-+.|+--.|
T Consensus       443 k~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgke--------e~I~KiGTmVhtLawndttNiLcglqD  514 (737)
T KOG1524|consen  443 KSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKE--------EEIYKIGTMVHTLAWNDTTNILCGLQD  514 (737)
T ss_pred             cccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCch--------hhhhhhhhhhhhhhhccccceeeeecc
Confidence             12366667666664    45577888888888888777652111        111112235889999999998888899


Q ss_pred             CcEEEEEcCC
Q 001362          957 THLAIYEAEE  966 (1092)
Q Consensus       957 ~~i~lwd~~~  966 (1092)
                      +.+.||-..+
T Consensus       515 t~fsVWy~pn  524 (737)
T KOG1524|consen  515 TCFSVWYYPN  524 (737)
T ss_pred             ceEEEEEcCC
Confidence            9999997754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.75  E-value=2e-17  Score=156.77  Aligned_cols=289  Identities=17%  Similarity=0.227  Sum_probs=200.7

Q ss_pred             CcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeec-CCCCcEEE
Q 001362          323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNR  401 (1092)
Q Consensus       323 p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~-~h~~~V~~  401 (1092)
                      |......|++|...|+++.|-.+++  |.+|..-|.|++|++.+...+..                   +. .|...|+.
T Consensus         3 pPdP~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~   61 (323)
T KOG0322|consen    3 PPDPFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITN   61 (323)
T ss_pred             CCCCeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeec
Confidence            4445677889999999999999996  78899999999999998776543                   33 36788999


Q ss_pred             EEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC-cEEEEEC--------
Q 001362          402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK-TIKVWDA--------  472 (1092)
Q Consensus       402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~-~i~vwd~--------  472 (1092)
                      +.--|+ ..|.+-+.|..+.+|++..+..+      ..|.-.++++.|.+-.    ++..+... ..-.++-        
T Consensus        62 lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfS----l~~~~k~~eqll~yp~rgsde~h~  130 (323)
T KOG0322|consen   62 LQSIPN-DSLDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFS----LVKKPKNSEQLLEYPSRGSDETHK  130 (323)
T ss_pred             eeecCC-cchhhcCCCceEEEEEccCcceE------EEeeeeccccccccce----eccCCCcchhheecCCcccchhhh
Confidence            998887 56778889999999999875432      2455566666665531    12221111 1111111        


Q ss_pred             -CCCceeEEE------ecCCcCeEEEeecccC-CccEEEEEecCCeEEEEEcCCCCceE----------EecCCCCceEE
Q 001362          473 -VTGSRTYSF------EGHGAPVYSLCPHAKE-NIHFIFSISVDGKIKAWLYDSLGARV----------DYDAPGLGCTR  534 (1092)
Q Consensus       473 -~~~~~~~~~------~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~----------~~~~~~~~i~~  534 (1092)
                       +-+...+..      .+..+.+.+..+.... ..-+++.|..+|.+.+||+.++....          ....|..++.+
T Consensus       131 ~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvls  210 (323)
T KOG0322|consen  131 QDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLS  210 (323)
T ss_pred             hccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCccee
Confidence             111111111      1223445554432221 22357788899999999999874333          34557778999


Q ss_pred             EEEccCCCEEEEEecCCCCceeEEEEeCCC--CeEE-EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001362          535 MAYSANGRRLFSCGTSKEGESFLVEWNESE--GAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~--~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~  611 (1092)
                      +.+.+.-..=++++.    ...+..|+++.  +.+. +...  ...+..|..+.+-||++.+++++.|+.||||+.++.+
T Consensus       211 ldyas~~~rGisgga----~dkl~~~Sl~~s~gslq~~~e~--~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~  284 (323)
T KOG0322|consen  211 LDYASSCDRGISGGA----DDKLVMYSLNHSTGSLQIRKEI--TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN  284 (323)
T ss_pred             eeechhhcCCcCCCc----cccceeeeeccccCcccccceE--EecCCCccceEEccCCcEEeecccCCcEEEEEeccCC
Confidence            998876555555554    33466666543  3321 1111  1123578889999999999999999999999999999


Q ss_pred             eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001362          612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      ++..+..|.  ..|++++|+|+..++|.++.|+.|.+|++
T Consensus       285 pLAVLkyHs--agvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  285 PLAVLKYHS--AGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             chhhhhhhh--cceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999886  46999999999999999999999999986

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=4.4e-18  Score=193.51  Aligned_cols=251  Identities=14%  Similarity=0.160  Sum_probs=197.1

Q ss_pred             CceEEeecCCCce---EEEEEcCCCcEEEEecCCC---CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001362          336 SPMSMDFHPVQHT---LLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1092)
Q Consensus       336 ~V~~v~~spdg~~---llasg~~d~~v~iwd~~~~---~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  409 (1092)
                      .-..++|.+.|..   ++|.|..||.|.+||...-   .....                ......|++.|..+.|++.+.
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~----------------la~~~~h~G~V~gLDfN~~q~  129 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV----------------LATKSKHTGPVLGLDFNPFQG  129 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH----------------HhhhcccCCceeeeeccccCC
Confidence            6778999888875   6899999999999998752   11110                011556999999999999655


Q ss_pred             -EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc--
Q 001362          410 -LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA--  486 (1092)
Q Consensus       410 -~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--  486 (1092)
                       +||+|+.||.|.|||+..-+.-.... -....+.|.+++|+..-.. +|++++.+|.+.|||++..+.+-.+..+..  
T Consensus       130 nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~  207 (1049)
T KOG0307|consen  130 NLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM  207 (1049)
T ss_pred             ceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCcc
Confidence             99999999999999998743222110 1124567999999987766 799999999999999999988877766554  


Q ss_pred             CeEEEeecccCCccEEEEEecCC--eEEEEEcCCCCc-eEEecCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeC
Q 001362          487 PVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      .+..+.|+|+...+++++...|+  .|.+||++.... ..++..|...|.++.|++.+ ++|++++.    |+.|.+|+.
T Consensus       208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN~  283 (1049)
T KOG0307|consen  208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWNP  283 (1049)
T ss_pred             ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEecC
Confidence            46788999886654444444444  499999987554 45678999999999999977 77888875    667999999


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 001362          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~s~dg~i~iwd~~~~~  611 (1092)
                      ++++.+..+....   +.+..+.|+|... .+++++.||.|.|+.+.+..
T Consensus       284 ~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  284 NTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCceEeeecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9999999998755   8899999999887 66778999999999987654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=6.8e-17  Score=160.81  Aligned_cols=302  Identities=12%  Similarity=0.110  Sum_probs=214.6

Q ss_pred             eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEE-eeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      +..-+.+|.+-|.++.||.+++ +||+|+.|..++||+++.--..++ +++.             ..-..|...|.|++|
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~-------------~~~~~H~SNIF~L~F  113 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIG-------------VMEHPHRSNIFSLEF  113 (609)
T ss_pred             hhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCce-------------eccCccccceEEEEE
Confidence            4456889999999999999997 799999999999999875332221 1111             012346789999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-ee--EEE
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RT--YSF  481 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~--~~~  481 (1092)
                      ....++|.+|..+++|...|+++.+.+... .-....+.|..+..+|...  .+++.+.++.|.+||..... ..  ..+
T Consensus       114 ~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~  190 (609)
T KOG4227|consen  114 DLENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLP  190 (609)
T ss_pred             ccCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeee
Confidence            999999999999999999999997655421 1112334899999999987  79999999999999987654 22  222


Q ss_pred             ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-------ecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001362          482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-------YDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      ........++-|+|.. ..+|++.+..+-+-+||.+.......       +........++.|+|.|+.+.+.-.    .
T Consensus       191 AN~~~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~  265 (609)
T KOG4227|consen  191 ANSGKNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----G  265 (609)
T ss_pred             cCCCccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----c
Confidence            2334456677787753 36888999999999999987654321       1111223467889999999887643    2


Q ss_pred             eeEEEEeCCCCeEEEEEeeccc----cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------------------
Q 001362          555 SFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--------------------  610 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~--------------------  610 (1092)
                      ..-.+||..+..+...-..|..    ....+.+++|..+. .+++|+.+-.|++|.+...                    
T Consensus       266 ~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~  344 (609)
T KOG4227|consen  266 KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI  344 (609)
T ss_pred             CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence            2345677766544322222221    11346778887664 4899999999999987531                    


Q ss_pred             ---ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001362          611 ---QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       611 ---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                         +.+..+.+|  ...++.+.|+|...+|++.+-...++||.-.
T Consensus       345 ~i~~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  345 FIEKELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             eecceeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence               122334444  4457899999999999999999999999754

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=1.4e-17  Score=174.81  Aligned_cols=262  Identities=15%  Similarity=0.196  Sum_probs=196.3

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEcc-----CCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  465 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~  465 (1092)
                      .+..|...|++++|.|-...|++++.||++++|+++     .+..+.++.+|.+|.++|.|+++.++++  .+++|+.||
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg  366 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG  366 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence            477799999999999999999999999999999993     3344667889999999999999999999  799999999


Q ss_pred             cEEEEECC------CC----ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--ceE
Q 001362          466 TIKVWDAV------TG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCT  533 (1092)
Q Consensus       466 ~i~vwd~~------~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~  533 (1092)
                      +|+.|++.      ..    .....+.||.+.|+.++++..+  ..|++++.||+++.|+...... .++.....  -..
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            99999543      11    2346778999999999998766  4799999999999998766555 33322222  223


Q ss_pred             EEEEccCC-CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc----cCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001362          534 RMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  608 (1092)
Q Consensus       534 ~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~  608 (1092)
                      ++.+.... ...++...    .+.-.+.+...+..+..+.....    ....+..+..+|.+...+++.+|+.|+++|..
T Consensus       444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence            34443222 11111111    11223334444444444432221    12457778899999999999999999999999


Q ss_pred             CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccc
Q 001362          609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL  663 (1092)
Q Consensus       609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  663 (1092)
                      ++..+.....+  ...+.++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus       520 ~~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  520 TGKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             ccccchheeec--cceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence            99999888765  456899999999999999999999999999877666554433

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=9.3e-18  Score=172.50  Aligned_cols=302  Identities=16%  Similarity=0.235  Sum_probs=234.5

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      .+...|.+|.+-|..|.|...|. +|++|+.|..|.+||+.++.....                  +..||...|..-.|
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKF  193 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKF  193 (559)
T ss_pred             hhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhc
Confidence            34467889999999999999998 799999999999999999887653                  25679999988889


Q ss_pred             CC--CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-
Q 001362          405 SP--DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-  481 (1092)
Q Consensus       405 sp--dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-  481 (1092)
                      -|  +.+.|++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -|.+++.|+.+.-.|+.++.....+ 
T Consensus       194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~  272 (559)
T KOG1334|consen  194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFV  272 (559)
T ss_pred             cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceee
Confidence            88  5678999999999998877544444434457789999999999999887 7999999999999999887654333 


Q ss_pred             --ecCCc---CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce------EEe------cCCCCceEEEEEccCCCEE
Q 001362          482 --EGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VDY------DAPGLGCTRMAYSANGRRL  544 (1092)
Q Consensus       482 --~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~------~~~~~~i~~~~~s~dg~~l  544 (1092)
                        ..+..   ...+++..|.. ...+++++.|..+++||.+.....      ..+      ......|++++|+.++.-|
T Consensus       273 cr~~~~~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl  351 (559)
T KOG1334|consen  273 CREADEKERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL  351 (559)
T ss_pred             eeccCCccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence              22233   35677776653 358999999999999998653322      111      1223479999999877766


Q ss_pred             EEEecCCCCceeEEEEeCCCCe------------E-EEEEeeccccCCceEEEE-EcCCCCEEEEEeCCCcEEEEECCCC
Q 001362          545 FSCGTSKEGESFLVEWNESEGA------------I-KRTYQGLQLQHNSVSVVH-FDTAKDQILAAGDDHVIKIWDMNKV  610 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~------------~-~~~~~~~~~~~~~v~~~~-~~p~~~~l~~~s~dg~i~iwd~~~~  610 (1092)
                      ++...    +..|+++....+.            . .+.++||... ..|..+. |.|...++++|+.-|.|.||+-.++
T Consensus       352 LaSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~  426 (559)
T KOG1334|consen  352 LASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG  426 (559)
T ss_pred             eeeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchh
Confidence            66554    4458888554322            2 2347888722 3477664 5788899999999999999999999


Q ss_pred             ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001362          611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      +.+..+.+..+  .|+|+.-+|--..||+.+-|..|+||...+.
T Consensus       427 eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  427 EIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             HHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            99998887766  5899999999999999999999999987544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.7e-15  Score=141.87  Aligned_cols=286  Identities=13%  Similarity=0.135  Sum_probs=197.6

Q ss_pred             cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001362          736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1092)
Q Consensus       736 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~  815 (1092)
                      .|.+-+++|.+++++++..+|.|-+..+..-..   +...          ..|+..+   .+.++|..++..++|.  ..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa~----------~~gk~~i---v~eqahdgpiy~~~f~--d~   73 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSAE----------PPGKLKI---VPEQAHDGPIYYLAFH--DD   73 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---cccC----------CCCCcce---eeccccCCCeeeeeee--hh
Confidence            345567899999999999999999998764321   1110          1111011   1123599999999998  46


Q ss_pred             EEEEEeCCeEEEEEcCCcee------eEEe-------cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee
Q 001362          816 YLFSASGGVISLYIVMTFKT------ILTI-------MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  882 (1092)
Q Consensus       816 ~l~~~sdg~i~iwd~~~~~~------~~~~-------~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l  882 (1092)
                      +|++++||.|+-|.......      +...       ...-.+|+++-+.|..+ -++.++.|+.++-||+++|+....+
T Consensus        74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~i~r~~  152 (325)
T KOG0649|consen   74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGRIQREY  152 (325)
T ss_pred             heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCEEEEEE
Confidence            88889999999998754321      1111       11235789999999444 4555558999999999999999999


Q ss_pred             ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC----CCCCceEEEEecCCCEEEEEeCCc
Q 001362          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT----LAPSETHIQFHKDQTRFLLVHETH  958 (1092)
Q Consensus       883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~v~~l~~s~dg~~la~~~d~~  958 (1092)
                      +||++.|.+++--.....+.||++||+++|||.++++...  .+...+....    ...+|  .+..-+..+|++|....
T Consensus       153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~  228 (325)
T KOG0649|consen  153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPK  228 (325)
T ss_pred             cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCcee--EEEeccCceEEecCCCc
Confidence            9999999999986666788999999999999999976444  2322222111    11223  45566778999988889


Q ss_pred             EEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEE
Q 001362          959 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1038 (1092)
Q Consensus       959 i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1038 (1092)
                      +.+|.+.+.++...+.  -..+|..+.|-.|  .+++++..++|.-|.+. |.+.....      ..  +...++.+...
T Consensus       229 lslwhLrsse~t~vfp--ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~--s~~c~s~s~~~  295 (325)
T KOG0649|consen  229 LSLWHLRSSESTCVFP--IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIP------VE--STACYSASWQT  295 (325)
T ss_pred             eeEEeccCCCceEEEe--cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEecc------CC--ccceeeecccC
Confidence            9999999988877643  3567888888654  67788888899999876 33332222      11  22234444555


Q ss_pred             CCCCCCEEEEEeCCCcEEEEe
Q 001362         1039 HPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus      1039 ~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
                      +|  -..+-.++..+.+.++.
T Consensus       296 ~p--~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  296 SP--IKFISIAGFSNKLHILK  314 (325)
T ss_pred             Cc--eEEEEecccceeeeeee
Confidence            66  35666677777777653

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.75  E-value=6.9e-16  Score=150.73  Aligned_cols=327  Identities=14%  Similarity=0.208  Sum_probs=223.7

Q ss_pred             EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceE
Q 001362          535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL  613 (1092)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~s~dg~i~iwd~~~~~~~  613 (1092)
                      .+|||+|+++++++.     ..+.+-|..+-+..+.+...    +.|..+.|..|..++++ ...++.|.+|++...+-.
T Consensus        14 c~fSp~g~yiAs~~~-----yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~   84 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSR-----YRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY   84 (447)
T ss_pred             eeECCCCCeeeeeee-----eEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence            679999999999973     35888888887776666553    36778889999888877 568889999999988887


Q ss_pred             EEEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecC
Q 001362          614 TTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  692 (1092)
Q Consensus       614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1092)
                      ..+...  ...+..++|||||+.+... ..+-.|.+|.+.+..... +.-....+..++|+|+                 
T Consensus        85 ckIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~d-----------------  144 (447)
T KOG4497|consen   85 CKIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPD-----------------  144 (447)
T ss_pred             EEeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCC-----------------
Confidence            777643  4568999999999766554 458899999998875443 3333444566777654                 


Q ss_pred             CCCCCCccceeeccccc---cc-----eeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC--CeeEEEe
Q 001362          693 DPKEDVKPEISVEAENK---SE-----VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWR  762 (1092)
Q Consensus       693 ~~s~d~~~l~s~~~d~~---i~-----lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~lw~  762 (1092)
                           |++.+..+....   +.     -|.+-.           ......-..+.+.|+|||..+++-..-  -.+..|.
T Consensus       145 -----g~f~ai~sRrDCkdyv~i~~c~~W~ll~-----------~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe  208 (447)
T KOG4497|consen  145 -----GQFCAILSRRDCKDYVQISSCKAWILLK-----------EFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE  208 (447)
T ss_pred             -----CceeeeeecccHHHHHHHHhhHHHHHHH-----------hcCCCcccccCceECCCCcEEEEecchhhheeeeee
Confidence                 444443333211   11     122110           001123345678899998866544332  1111111


Q ss_pred             ecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee-----
Q 001362          763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI-----  836 (1092)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~-----  836 (1092)
                                                            -.-.+..++++|.++++++|+ |+.+|+.+--+.+..     
T Consensus       209 --------------------------------------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflh  250 (447)
T KOG4497|consen  209 --------------------------------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLH  250 (447)
T ss_pred             --------------------------------------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhcc
Confidence                                                  234577888999999999887 777777653222111     


Q ss_pred             -------------------------------------------------------EEec------CCCCCeEEEEEcCCC
Q 001362          837 -------------------------------------------------------LTIM------PPSPTATSLAFNPHD  855 (1092)
Q Consensus       837 -------------------------------------------------------~~~~------~~~~~i~~l~~s~~d  855 (1092)
                                                                             ..++      .+...+.-++|++ |
T Consensus       251 l~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-D  329 (447)
T KOG4497|consen  251 LCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-D  329 (447)
T ss_pred             chhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-C
Confidence                                                                   1111      1223567789999 8


Q ss_pred             CCEEEEEeCC--CcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc
Q 001362          856 NNVIAIGMDD--STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM  933 (1092)
Q Consensus       856 ~~~lasg~~d--g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  933 (1092)
                      ..++|+-.+.  ..+.+||++.-+....+. ...+|.+..|.|....|+.+.....+++|....     ..++..+....
T Consensus       330 s~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg-----~~~V~vP~~GF  403 (447)
T KOG4497|consen  330 STYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG-----PRVVGVPKKGF  403 (447)
T ss_pred             ceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCC-----ceEEecCCCCc
Confidence            9888876543  489999999877666665 567899999999999999888888899999887     34555554444


Q ss_pred             CCCCCceEEEEecCCCEEEEEe
Q 001362          934 TLAPSETHIQFHKDQTRFLLVH  955 (1092)
Q Consensus       934 ~~~~~v~~l~~s~dg~~la~~~  955 (1092)
                          .|..+.|.-+|..++..+
T Consensus       404 ----~i~~l~W~~~g~~i~l~~  421 (447)
T KOG4497|consen  404 ----NIQKLQWLQPGEFIVLCG  421 (447)
T ss_pred             ----eeeeEEecCCCcEEEEEc
Confidence                499999999999988843

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.2e-16  Score=166.08  Aligned_cols=246  Identities=17%  Similarity=0.159  Sum_probs=163.3

Q ss_pred             EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcCeEEEeecccCCccEEEEEecCCeEEE
Q 001362          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKA  513 (1092)
Q Consensus       435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~v  513 (1092)
                      .++.||++.|+|++|+.||.  +|++|+.|-.+.|||.-..+.++.+ .||...|.++.|.|..+..++++|..|..|++
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            36889999999999999999  8999999999999999988888887 68999999999999999999999999999999


Q ss_pred             EEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC-CE
Q 001362          514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQ  592 (1092)
Q Consensus       514 wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~  592 (1092)
                      +|++..+....                         +..           ..+....+..|.   ..|..++-.|++ +.
T Consensus       122 fdl~~~~~~~~-------------------------d~~-----------~~~~~~~~~cht---~rVKria~~p~~Pht  162 (758)
T KOG1310|consen  122 FDLDSSKEGGM-------------------------DHG-----------MEETTRCWSCHT---DRVKRIATAPNGPHT  162 (758)
T ss_pred             Eeccccccccc-------------------------ccC-----------ccchhhhhhhhh---hhhhheecCCCCCce
Confidence            99875332110                         000           011122233444   677788888888 77


Q ss_pred             EEEEeCCCcEEEEECCCCceE-EE-------EeCCCCCCCCceEEEcc-CCCEEEEEeCCCeEEEEECCCC-ceeeecc-
Q 001362          593 ILAAGDDHVIKIWDMNKVQLL-TT-------IDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPES-NSVDAAG-  661 (1092)
Q Consensus       593 l~~~s~dg~i~iwd~~~~~~~-~~-------~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~-  661 (1092)
                      +.++++||+++-+|++....- ..       .......-...++..+| +..+|++|+.|-..++||.... +.+..-. 
T Consensus       163 fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~  242 (758)
T KOG1310|consen  163 FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGT  242 (758)
T ss_pred             EEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcc
Confidence            889999999999999863211 00       01111122456889998 5678999999999999994321 1111100 


Q ss_pred             ---cccCceeeee-ecCCCccccccccC------CceeecCCCCCCCccceeeccccccceeccccccCccccc
Q 001362          662 ---VLSDNLRKLS-VNPISTVTGAGIAN------GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  725 (1092)
Q Consensus       662 ---~~~~~v~~~~-~~~~~~~~~~~~~~------~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~  725 (1092)
                         .......|+. |+|......-+...      ..+.|    +|+|..++..-....|.++++...+......
T Consensus       243 ~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf----npNGtElLvs~~gEhVYlfdvn~~~~~~~y~  312 (758)
T KOG1310|consen  243 MNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF----NPNGTELLVSWGGEHVYLFDVNEDKSPTPYF  312 (758)
T ss_pred             ccCCCCcccchhheecCccccCcccccccceeeeEEEEE----CCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence               0011111222 22222211111111      12344    6788777777766778888877655443333

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.74  E-value=2.2e-16  Score=151.49  Aligned_cols=260  Identities=17%  Similarity=0.223  Sum_probs=186.6

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCC-------CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  400 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d-------~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~  400 (1092)
                      .+|..|.++|+.++-+|-.+++|+++..+       ..+.||.+........  ..       ....-..+-+.+-+.|.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~-------tlE~v~~Ldteavg~i~  127 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SS-------TLECVASLDTEAVGKIN  127 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cc-------hhhHhhcCCHHHhCcee
Confidence            45678899999999999998899987653       2367888754321100  00       00000111224566999


Q ss_pred             EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceE---EEcccccceeEEEEec--CCCcEEEEEEeCCCcEEEEECCCC
Q 001362          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~---~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      |+.|.|++..||+-. |..|.+|++..+..+....   .-.+|....++-+|+|  ||.  .+++.+ |+++..||+++.
T Consensus       128 cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~  203 (370)
T KOG1007|consen  128 CVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTM  203 (370)
T ss_pred             eEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccch
Confidence            999999999999875 6779999999876532110   1123566788999999  666  455544 899999999998


Q ss_pred             ceeEEE-ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCceEEEEEccCCCEEE-EEecCCC
Q 001362          476 SRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLF-SCGTSKE  552 (1092)
Q Consensus       476 ~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~-~~~~~~~  552 (1092)
                      ++...+ ..|...|..+.|+|.. ..+|++++.||.|++||.+..+ ++..+..|.+.+.++.|+|.-..|+ +++.   
T Consensus       204 ~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S---  279 (370)
T KOG1007|consen  204 KKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS---  279 (370)
T ss_pred             hhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC---
Confidence            887776 4688899999998864 3689999999999999998765 4668899999999999999766555 4443   


Q ss_pred             CceeEEEEeCCCCe-----------------------------EEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCcE
Q 001362          553 GESFLVEWNESEGA-----------------------------IKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVI  602 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~s~dg~i  602 (1092)
                       +..|.+|...+-.                             .+.++..|.   +.|++++|+.-..++++ -+.||.+
T Consensus       280 -Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRv  355 (370)
T KOG1007|consen  280 -DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRV  355 (370)
T ss_pred             -CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceE
Confidence             5557777432211                             123444455   89999999988887654 7899998


Q ss_pred             EEEECC
Q 001362          603 KIWDMN  608 (1092)
Q Consensus       603 ~iwd~~  608 (1092)
                      .|=.+.
T Consensus       356 iIs~V~  361 (370)
T KOG1007|consen  356 IISSVP  361 (370)
T ss_pred             EeecCC
Confidence            876554

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=4.1e-17  Score=171.30  Aligned_cols=270  Identities=14%  Similarity=0.189  Sum_probs=192.1

Q ss_pred             eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001362          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      ..+|.-|.+.|..++|.|-.. .|++++.||++.+|+++....-....+           -+...+.+|.++|.|+++++
T Consensus       287 k~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~-----------epi~tfraH~gPVl~v~v~~  354 (577)
T KOG0642|consen  287 KFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDV-----------EPILTFRAHEGPVLCVVVPS  354 (577)
T ss_pred             eeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccce-----------eeeEEEecccCceEEEEecC
Confidence            358889999999999999987 699999999999999943211111010           11123789999999999999


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCC-------cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001362          407 DGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      +++.+.+|+.||+|+.|++....       .......+.||++.|+.+++|+...  .|++|+.||+++.|+...... .
T Consensus       355 n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~  431 (577)
T KOG0642|consen  355 NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-C  431 (577)
T ss_pred             CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-c
Confidence            99999999999999999664211       1112235779999999999999888  699999999999999766655 3


Q ss_pred             EEecCC--cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCceEEEEEccCCCEEEEEecC
Q 001362          480 SFEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       480 ~~~~~~--~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      +|....  +.-.++.+..+. -...++...-+.-.+.++........+...       ...+..+...|.+...+++.. 
T Consensus       432 ~f~~~~e~g~Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he-  509 (577)
T KOG0642|consen  432 TFGEPKEHGYPLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE-  509 (577)
T ss_pred             ccCCccccCCcceEeeccch-hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc-
Confidence            343221  222334332111 011222222222223333333333332221       124567778888888888775 


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001362          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  619 (1092)
                         +..|+++|..++..+.....|.   ..++++++.|+|.+|++++.|+.+++|.+....++.....+
T Consensus       510 ---d~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  510 ---DRSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             ---CCceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence               6679999999999999998888   89999999999999999999999999999877766655443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=9.2e-17  Score=158.23  Aligned_cols=292  Identities=13%  Similarity=0.172  Sum_probs=203.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCC-CceE
Q 001362          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APG-LGCT  533 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~-~~i~  533 (1092)
                      .++++-..|.|++||..+++.+..|+++...++.+.|......+.+.+++.||+|++||++.......+.  .+. .+..
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~  121 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI  121 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence            6788888999999999999999999999999999999875566789999999999999999877655433  333 3566


Q ss_pred             EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE-EEEEe-eccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 001362          534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQ-GLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV  610 (1092)
Q Consensus       534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~-~~~~~~~~v~~~~~~p~~-~~l~~~s~dg~i~iwd~~~~  610 (1092)
                      +++..-.++.++++..-...+..|.+||.+..+. ++.+. .|.   +.|+++.|+|.. +.|++||.||.|.+||++..
T Consensus       122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~---DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN---DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc---CcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            6766667888888776666678899999998766 55443 344   899999999975 67889999999999998764


Q ss_pred             c----eEEEEeCCCCCCCCceEEEccCC-CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccC
Q 001362          611 Q----LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN  685 (1092)
Q Consensus       611 ~----~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  685 (1092)
                      .    ++.++.   ....|.++.|..++ +.+.+.+..++..+|++..+.....+....-..... ..         -..
T Consensus       199 ~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~-r~---------~~~  265 (376)
T KOG1188|consen  199 NEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDL-RK---------EDN  265 (376)
T ss_pred             cchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhH-Hh---------hhh
Confidence            2    223332   23458889998876 458888899999999999886444333221100000 00         000


Q ss_pred             CceeecCCCCCCCccceeecc-ccccceeccccccCc-cccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEee
Q 001362          686 GSVSVNEDPKEDVKPEISVEA-ENKSEVEKPLFARPS-ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  763 (1092)
Q Consensus       686 ~~~~~~~~~s~d~~~l~s~~~-d~~i~lw~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~  763 (1092)
                      ....++.....++...+.++. .++..++-+....+. ..........+|..-|.++.|...+..+.+++.||.+.+|..
T Consensus       266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            011112221233444444443 566666654422121 122233344557777888899989999999999999999985


Q ss_pred             c
Q 001362          764 P  764 (1092)
Q Consensus       764 ~  764 (1092)
                      +
T Consensus       346 ~  346 (376)
T KOG1188|consen  346 E  346 (376)
T ss_pred             C
Confidence            3

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=4.3e-16  Score=155.21  Aligned_cols=294  Identities=11%  Similarity=0.071  Sum_probs=209.6

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC---cccceEEE-cccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~---~~~~~~~~-~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  467 (1092)
                      +.+|.+.|.++.||.++++||+|+.|..+++|+++.--   ..+.+... ..|...|.|++|....+  .+.+|+.+++|
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~V  129 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGTV  129 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCccee
Confidence            67899999999999999999999999999999986321   11112111 23567899999998887  89999999999


Q ss_pred             EEEECCCCceeEEEec--CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEccCCC
Q 001362          468 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGR  542 (1092)
Q Consensus       468 ~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~dg~  542 (1092)
                      ...|+++.+.+..+..  ..+.|+.+..+|.  ...|++.+.+|.|.+||.+....   ............++.|+|-..
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P  207 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP  207 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence            9999999999988753  2348999998876  36899999999999999987552   333444555788899999887


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeE-EE---EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001362          543 RLFSCGTSKEGESFLVEWNESEGAI-KR---TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~~-~~---~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  618 (1092)
                      .|+.......   -+-+||.+.... +.   .+.+.......-..+.|+|+|+++++.-....-.+||+.+.++......
T Consensus       208 ~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D  284 (609)
T KOG4227|consen  208 ALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD  284 (609)
T ss_pred             eeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence            7666554333   378899875432 11   1222221112335678999999999877666667788877544322222


Q ss_pred             CC-----CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC-----------------------ceeeecccccCceeee
Q 001362          619 GG-----GLPENPRICFNKNGTLLAVIANENRIKILETPES-----------------------NSVDAAGVLSDNLRKL  670 (1092)
Q Consensus       619 ~~-----~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-----------------------~~~~~~~~~~~~v~~~  670 (1092)
                      |.     ....+.+++|-.|- .+++|+++-.|++|.+...                       ..+..+++|..-+..+
T Consensus       285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV  363 (609)
T KOG4227|consen  285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV  363 (609)
T ss_pred             CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence            11     12235677786554 4999999999999998732                       1234455565555555


Q ss_pred             eecCCCccccccccCCceeecCCCCCCCccceeeccccccceecc
Q 001362          671 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP  715 (1092)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~  715 (1092)
                      .|+                      |...++++.+-++.+++|.-
T Consensus       364 RF~----------------------~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  364 RFS----------------------QHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             eec----------------------CCcceEeccchhhheecccc
Confidence            554                      55677888888899999973

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=1.4e-14  Score=159.92  Aligned_cols=198  Identities=12%  Similarity=0.140  Sum_probs=127.8

Q ss_pred             eEEEEecCCCEEEEEe--CCeEEEEEcCC-c---eeeEEecCCCCCeEEEEEcCCCCCEEE-EEeCCCcEEEEEcCCcee
Q 001362          806 PCFALSKNDAYLFSAS--GGVISLYIVMT-F---KTILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEV  878 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~---~~~~~~~~~~~~i~~l~~s~~d~~~la-sg~~dg~v~iwd~~~~~~  878 (1092)
                      ..++++|+++++++++  ++.|.+|++.+ +   +.+..+. +.....+++++| ++++++ +...++.|.+||+.+...
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~  160 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGH  160 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCc
Confidence            4566777777776665  46677777753 2   1222222 223466789999 777775 455669999999986332


Q ss_pred             eE-------eeccccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC--CceeeeeeeecCCCCcCCCCCceEEEEecCC
Q 001362          879 IS-------KLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  948 (1092)
Q Consensus       879 ~~-------~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg  948 (1092)
                      +.       .... ......++|+|||++++++.. +++|.+|+++.  ++......+...............+.|+|||
T Consensus       161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg  239 (330)
T PRK11028        161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG  239 (330)
T ss_pred             ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence            21       1111 234678999999999988876 89999999984  3322222222211111111134468999999


Q ss_pred             CEEEEE--eCCcEEEEEcCCce----eeeeeccCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEEcC
Q 001362          949 TRFLLV--HETHLAIYEAEELT----CLKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEAS 1008 (1092)
Q Consensus       949 ~~la~~--~d~~i~lwd~~~~~----~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~-Dg~i~vwd~~ 1008 (1092)
                      ++++++  .++.|.+|++....    .+.....  ......+.|+|||++|+++.. +++|.+|+++
T Consensus       240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            999986  45789999986432    2222111  124557899999999998775 8999999875

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=2e-15  Score=141.37  Aligned_cols=278  Identities=17%  Similarity=0.201  Sum_probs=192.4

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCC---CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~---~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      .|.+-++||.++ +|+.|..+|+|.+..+.+-   +....            ...+.....+|.++|..++|.  ..+|+
T Consensus        12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~------------gk~~iv~eqahdgpiy~~~f~--d~~Ll   76 (325)
T KOG0649|consen   12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPP------------GKLKIVPEQAHDGPIYYLAFH--DDFLL   76 (325)
T ss_pred             HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCCC------------CCcceeeccccCCCeeeeeee--hhhee
Confidence            566778999998 6899999999999988642   11100            001111146899999999998  55777


Q ss_pred             EEeCCCEEEEEEccCCCc---ccceEE--Ecccc-----cceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001362          413 VAYSKHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       413 s~~~d~~i~iwd~~~~~~---~~~~~~--~~~h~-----~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      +|+ ||.|+=|.+.....   .+...+  ...|.     -.|+++...|...  -++.++.|+.++-||+++|+..++++
T Consensus        77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~r  153 (325)
T KOG0649|consen   77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYR  153 (325)
T ss_pred             ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEc
Confidence            775 49999998864322   111111  11222     2588999998777  46666689999999999999999999


Q ss_pred             cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC----------ceEEEEEccCCCEEEEEecCCC
Q 001362          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----------GCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      ||++.|.++.-..  ....+++|+.||++|+||.++.+....+..-..          .|  .+..-+..++++|+.   
T Consensus       154 GHtDYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgG---  226 (325)
T KOG0649|consen  154 GHTDYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGG---  226 (325)
T ss_pred             CCcceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCC---
Confidence            9999999988632  234789999999999999999988776543221          34  344456778888864   


Q ss_pred             CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001362          553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                        ..+.+|++++.+....+.-.    ..+..+.|..  ..++++++.+.|.-|.+. |......+...+  ...+..++.
T Consensus       227 --p~lslwhLrsse~t~vfpip----a~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~  295 (325)
T KOG0649|consen  227 --PKLSLWHLRSSESTCVFPIP----ARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQT  295 (325)
T ss_pred             --CceeEEeccCCCceEEEecc----cceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccC
Confidence              34999999999988888763    4777788864  468888888889999874 444444443322  234444433


Q ss_pred             C-CCEEEEEeCCCeEEEE
Q 001362          633 N-GTLLAVIANENRIKIL  649 (1092)
Q Consensus       633 ~-~~~l~~~~~dg~i~iw  649 (1092)
                      . -+++-.++....+.|+
T Consensus       296 ~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  296 SPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             CceEEEEecccceeeeee
Confidence            2 2344455555666554

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.72  E-value=1.9e-14  Score=143.78  Aligned_cols=242  Identities=11%  Similarity=0.147  Sum_probs=187.4

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001362          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      ...+..+.|+.|...|..|+.|| -++|+.+......   ........|.-+-|+..  .+.+|+...-..+++.+.+.+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~   78 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKK   78 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccC
Confidence            34677788999999999999999 7888887643211   11122335666667654  213344433345999999988


Q ss_pred             ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC---CCceEEEEEccCCCEEEEEecCCC
Q 001362          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---GLGCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      ..+..+. ...+|.++.++.    ++|+.+-.+. |.|||+++.+...++...   ...+.++++++.+.+++.-+... 
T Consensus        79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t-  151 (391)
T KOG2110|consen   79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT-  151 (391)
T ss_pred             ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-
Confidence            8888775 566788888743    4666666555 999999999888766543   34566667777777988765432 


Q ss_pred             CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001362          553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                       .+.|++||..+-+.+..+..|.   +.+.+++|+++|.+++++|+.|+ |||+.+.+|+.+..+........|.+++|+
T Consensus       152 -~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs  227 (391)
T KOG2110|consen  152 -SGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS  227 (391)
T ss_pred             -CceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence             5669999999999999999888   99999999999999999999887 799999999999999866555678899999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCC
Q 001362          632 KNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       632 ~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      |++++|++.++.++|.+|.+...
T Consensus       228 ~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  228 PDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             CCCCeEEEecCCCeEEEEEeccc
Confidence            99999999999999999998854

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=4e-16  Score=153.76  Aligned_cols=276  Identities=15%  Similarity=0.181  Sum_probs=192.8

Q ss_pred             EEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEEcc
Q 001362          349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYH  426 (1092)
Q Consensus       349 llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~las~~~d~~i~iwd~~  426 (1092)
                      .+|++-..|+|++||..+|+.+..                   +++|...++.++|..  ....+.+|+.||+|++||+.
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R  102 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR  102 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence            577787889999999999988875                   667888888999987  46788999999999999999


Q ss_pred             CCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEe----CCCcEEEEECCCCce-eEEE-ecCCcCeEEEeecccCCc
Q 001362          427 GGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG----DDKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKENI  499 (1092)
Q Consensus       427 ~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~----~d~~i~vwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~  499 (1092)
                      +......+ .+.+|. .+..+++..-.++  ++++|.    .|-.|.+||++..+. +..+ ..|...|++++|+|+ +.
T Consensus       103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~p  178 (376)
T KOG1188|consen  103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DP  178 (376)
T ss_pred             cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CC
Confidence            87655443 355666 4667777665666  566664    466799999998766 5444 679999999999997 45


Q ss_pred             cEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001362          500 HFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1092)
Q Consensus       500 ~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1092)
                      .+|++||.||.|.++|+......   ...-.+...|..+.|..++ +.+.+.+.    .....+|+++.+.....+....
T Consensus       179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~  254 (376)
T KOG1188|consen  179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD  254 (376)
T ss_pred             CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence            79999999999999998765332   2233455678999999888 34555443    4458999998887655444321


Q ss_pred             cc---------CCceEEEEEcCCCCEEEE-EeCCCcEEEEECC---CCceE---EEEeCCCCCCCCceEEEccCCCEEEE
Q 001362          576 LQ---------HNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN---KVQLL---TTIDAGGGLPENPRICFNKNGTLLAV  639 (1092)
Q Consensus       576 ~~---------~~~v~~~~~~p~~~~l~~-~s~dg~i~iwd~~---~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~  639 (1092)
                      ..         ...+.......++...+. |+.-+...++-+.   ++...   ..+.+ ++...|+++.|...+.++.+
T Consensus       255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T  333 (376)
T KOG1188|consen  255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT  333 (376)
T ss_pred             chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence            00         011111111123334444 4435666666443   33332   33332 23455788899999999999


Q ss_pred             EeCCCeEEEEECC
Q 001362          640 IANENRIKILETP  652 (1092)
Q Consensus       640 ~~~dg~i~iw~~~  652 (1092)
                      |+.||.+.+|..+
T Consensus       334 GGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  334 GGEDGLLQAWKVE  346 (376)
T ss_pred             cCCCceEEEEecC
Confidence            9999999999864

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.71  E-value=2.5e-15  Score=144.61  Aligned_cols=292  Identities=18%  Similarity=0.257  Sum_probs=206.2

Q ss_pred             eeecccCCCCceEEeec--CCCceEEEEEcCC----CcEEEEec--CCCCeeEEeeeeeeecccccceeeEeeecCCCCc
Q 001362          327 AQTLIEGSSSPMSMDFH--PVQHTLLLVGTNV----GDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS  398 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~s--pdg~~llasg~~d----~~v~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~  398 (1092)
                      +..+..+- .+.++.||  |+.+..||.|+.-    +.|.|-.+  ++++.+...+                  ..|.-+
T Consensus        38 iy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP   98 (364)
T KOG0290|consen   38 IYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP   98 (364)
T ss_pred             EEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence            45556655 78889998  6667778998752    44555443  4555544322                  248899


Q ss_pred             EEEEEECCCCC-----EEEEEeCCCEEEEEEccCCCc-ccceEE-----EcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001362          399 VNRVVWSPDGS-----LLGVAYSKHIVQLYAYHGGSD-ARQQLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1092)
Q Consensus       399 V~~l~~spdg~-----~las~~~d~~i~iwd~~~~~~-~~~~~~-----~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  467 (1092)
                      ++.+-|.||.+     +||+++ | .+++|.+...+. +.....     -..+..++++..|+.-... ++.+++-|-+.
T Consensus        99 ~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC  175 (364)
T KOG0290|consen   99 VTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC  175 (364)
T ss_pred             ccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence            99999999873     566653 3 499999974221 111111     1245678999999986665 79999999999


Q ss_pred             EEEECCCCce---eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCC--CCceEEEEEccCC
Q 001362          468 KVWDAVTGSR---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAP--GLGCTRMAYSANG  541 (1092)
Q Consensus       468 ~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~--~~~i~~~~~s~dg  541 (1092)
                      .|||+++|..   ...+-.|...|..++|.. +.-+.+++.+.||.+|++|++..+.-. .++..  ..+...++|+++.
T Consensus       176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD  254 (364)
T KOG0290|consen  176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD  254 (364)
T ss_pred             EEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence            9999999733   556778999999999975 344799999999999999999866433 33333  3477888888854


Q ss_pred             -CEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceE---EE
Q 001362          542 -RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLL---TT  615 (1092)
Q Consensus       542 -~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~s~dg~i~iwd~~~~~~~---~~  615 (1092)
                       +++++...+   ...|.+.|++. ...+..+++|.   ..|+.++|.|.. ..+.+++.|..+.+||+...-..   ..
T Consensus       255 pnymATf~~d---S~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP  328 (364)
T KOG0290|consen  255 PNYMATFAMD---SNKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP  328 (364)
T ss_pred             chHHhhhhcC---CceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence             566665543   34588999875 45678888888   999999999974 67888999999999999753220   00


Q ss_pred             EeCCCCCCCCceEEEcc-CCCEEEEEeCCCeEEE
Q 001362          616 IDAGGGLPENPRICFNK-NGTLLAVIANENRIKI  648 (1092)
Q Consensus       616 ~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i  648 (1092)
                      +-.-.....|+.+.|++ .+..++++.. +.+.+
T Consensus       329 ilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  329 ILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             hhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            00111234689999996 5677887765 34444

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.71  E-value=2.5e-14  Score=157.92  Aligned_cols=275  Identities=14%  Similarity=0.194  Sum_probs=178.0

Q ss_pred             eEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-CCCEEEEEEc
Q 001362          348 TLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY  425 (1092)
Q Consensus       348 ~llasg~~d~~v~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~  425 (1092)
                      +++++...++.|.+||+.+ |+......                 + .+.+.+..++++||+++|++++ .++.|.+|++
T Consensus         3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~   64 (330)
T PRK11028          3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI   64 (330)
T ss_pred             EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence            3455667789999999974 43222111                 1 1345677899999999997764 4778999999


Q ss_pred             cCCCcccceEEEcccccceeEEEEecCCCcEEEEEE-eCCCcEEEEECCC-Cc---eeEEEecCCcCeEEEeecccCCcc
Q 001362          426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVT-GS---RTYSFEGHGAPVYSLCPHAKENIH  500 (1092)
Q Consensus       426 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~-~~d~~i~vwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~~  500 (1092)
                      .....+...... ...+....++|+|+++.  ++++ ..++.|.+|++++ +.   .+..+.+ ......++++  ++++
T Consensus        65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~--p~g~  138 (330)
T PRK11028         65 ADDGALTFAAES-PLPGSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANID--PDNR  138 (330)
T ss_pred             CCCCceEEeeee-cCCCCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeC--CCCC
Confidence            732222211122 12335678999999994  4444 4588999999874 32   2333332 2334556674  4666


Q ss_pred             EEE-EEecCCeEEEEEcCCCCceEE-----e-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC--Ce--EEE
Q 001362          501 FIF-SISVDGKIKAWLYDSLGARVD-----Y-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GA--IKR  569 (1092)
Q Consensus       501 ~l~-s~~~dg~i~vwd~~~~~~~~~-----~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~--~~--~~~  569 (1092)
                      +++ +...++.|.+||+++......     . ...+.....++|+|||++++++..   .++.|.+|++..  ++  .+.
T Consensus       139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~  215 (330)
T PRK11028        139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ  215 (330)
T ss_pred             EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence            664 555679999999986432211     1 112345678999999999988753   356799999873  33  333


Q ss_pred             EEeeccc---cCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc----eEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001362          570 TYQGLQL---QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1092)
Q Consensus       570 ~~~~~~~---~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  641 (1092)
                      .+.....   +......+.++|++++++++. .++.|.+|++....    .+......   .....++++|+|++|+++.
T Consensus       216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~  292 (330)
T PRK11028        216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG  292 (330)
T ss_pred             EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence            3332210   112234688999999999985 47899999986433    22222221   2356899999999999887


Q ss_pred             C-CCeEEEEECC
Q 001362          642 N-ENRIKILETP  652 (1092)
Q Consensus       642 ~-dg~i~iw~~~  652 (1092)
                      . +++|.+|++.
T Consensus       293 ~~~~~v~v~~~~  304 (330)
T PRK11028        293 QKSHHISVYEID  304 (330)
T ss_pred             ccCCcEEEEEEc
Confidence            6 8999999875

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.71  E-value=5.4e-17  Score=176.92  Aligned_cols=287  Identities=14%  Similarity=0.229  Sum_probs=224.8

Q ss_pred             EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE
Q 001362          567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI  646 (1092)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i  646 (1092)
                      .++.+.+|.   +.|+|+.|...|.++++|+.|..++||..+++.++....+|.+  .++.++.+.+..++++++.|..|
T Consensus       182 ~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~vI  256 (1113)
T KOG0644|consen  182 NIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKVI  256 (1113)
T ss_pred             HHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCceE
Confidence            345566776   8999999999999999999999999999999999999887754  69999999999999999999999


Q ss_pred             EEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc-Cccccc
Q 001362          647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR-PSECQS  725 (1092)
Q Consensus       647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~-~~~~~~  725 (1092)
                      ++|.+.++.++..+++|.+.|++++|+|..                          +.+.||++++||..... ......
T Consensus       257 rvWrl~~~~pvsvLrghtgavtaiafsP~~--------------------------sss~dgt~~~wd~r~~~~~y~prp  310 (1113)
T KOG0644|consen  257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--------------------------SSSDDGTCRIWDARLEPRIYVPRP  310 (1113)
T ss_pred             EEEecCCCchHHHHhccccceeeeccCccc--------------------------cCCCCCceEeccccccccccCCCC
Confidence            999999999999999999999999999742                          55678999999976110 000001


Q ss_pred             cccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCe
Q 001362          726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  805 (1092)
Q Consensus       726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v  805 (1092)
                      .   .......+..+.|..++..+++++.++....|.++.-               .|                 +...+
T Consensus       311 ~---~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---------------~~-----------------~~~~l  355 (1113)
T KOG0644|consen  311 L---KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL---------------AW-----------------RSNLL  355 (1113)
T ss_pred             C---CcccccceeeeeccccccccccccCCcccccchhhHh---------------hh-----------------hccce
Confidence            1   1113355677888888999999999988887765431               11                 11222


Q ss_pred             eEEEEecCC-CEEEEE-eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec
Q 001362          806 PCFALSKND-AYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE  883 (1092)
Q Consensus       806 ~~~~~s~dg-~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~  883 (1092)
                      .-+.++.|- .+.+++ .+..+++|++.+|...+.+.+|...+..+.++|.+.+...+++.||...|||+-.|.+++...
T Consensus       356 if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~  435 (1113)
T KOG0644|consen  356 IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF  435 (1113)
T ss_pred             EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence            222222222 333444 367899999999999999999999999999999888888899999999999999987766554


Q ss_pred             cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001362          884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  919 (1092)
Q Consensus       884 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~  919 (1092)
                      .-.+.+..-+||+||..++....-|.+.|.....++
T Consensus       436 ~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  436 IGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             cccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            334557778999999999988888999998765543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=9.8e-15  Score=145.82  Aligned_cols=241  Identities=11%  Similarity=0.176  Sum_probs=183.9

Q ss_pred             CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEEcCCceee
Q 001362          802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI  879 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~  879 (1092)
                      ...+..+.|..|...|..|+....++|.................|..+-|+.   .++|..+.+.  .+++++++.+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence            3456677788888999999877788888876554333333344677778876   3666666544  5999999988888


Q ss_pred             EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-E--eC
Q 001362          880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--HE  956 (1092)
Q Consensus       880 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~--~d  956 (1092)
                      ..+. ...+|.++.+.  .++|+.+=.+. |+|||+++     .+.+.+.....+....+.++++++.+.+||. +  ..
T Consensus        82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~-----MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~  152 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKD-----MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS  152 (391)
T ss_pred             EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEeccc-----ceeehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence            7776 55679899885  45666665554 99999998     4456655544332234667777777889998 3  45


Q ss_pred             CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCc-EEEEEcCCCceEEeeccccccCCCCccCcccceE
Q 001362          957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035 (1092)
Q Consensus       957 ~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1035 (1092)
                      |.|.|||+.+.+.+.. ...|.+.+.+++|++||.+|||+|..|+ |||+.+.+|..+..|+...+        ++...+
T Consensus       153 GdV~l~d~~nl~~v~~-I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------~~~IyS  223 (391)
T KOG2110|consen  153 GDVVLFDTINLQPVNT-INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------PVSIYS  223 (391)
T ss_pred             ceEEEEEcccceeeeE-EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------eeEEEE
Confidence            8899999999988887 5589999999999999999999999998 89999999999999983332        233457


Q ss_pred             EEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001362         1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1036 ~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
                      ++|+| |+.+|++.+..++|++|.+....
T Consensus       224 L~Fs~-ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  224 LSFSP-DSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEECC-CCCeEEEecCCCeEEEEEecccc
Confidence            89999 58999999999999999996543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.70  E-value=8.1e-16  Score=147.69  Aligned_cols=229  Identities=14%  Similarity=0.175  Sum_probs=176.3

Q ss_pred             CCeEEEEEcCCce--e-eEEecCCCCCeEEEEEcCCCCCEEEEEeCC-------CcEEEEEcCCc---------eeeEee
Q 001362          822 GGVISLYIVMTFK--T-ILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------STILIYNARSS---------EVISKL  882 (1092)
Q Consensus       822 dg~i~iwd~~~~~--~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~d-------g~v~iwd~~~~---------~~~~~l  882 (1092)
                      ++.|.+.++....  . -..|..|.++|..++-+|.+.++|++...+       ..+.||.+...         +++..+
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L  118 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL  118 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence            5778877776443  2 245677889999999999888899988764       25789988642         345555


Q ss_pred             c-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEec--CCCEEEEEeCCcE
Q 001362          883 E-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRFLLVHETHL  959 (1092)
Q Consensus       883 ~-~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~la~~~d~~i  959 (1092)
                      . .+-+.|.|+.|.|++..+++-. |..|.+|+++.+......+.......  .....++-+|||  ||..+++..|+++
T Consensus       119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e--~~~~ftsg~WspHHdgnqv~tt~d~tl  195 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE--MRHSFTSGAWSPHHDGNQVATTSDSTL  195 (370)
T ss_pred             CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc--ccceecccccCCCCccceEEEeCCCcE
Confidence            5 4667999999999999999876 77899999998765332222221111  113577889998  8999999999999


Q ss_pred             EEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEECCCcEEEEEcCCCceE-EeeccccccCCCCccCcccceEEE
Q 001362          960 AIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEASNLEVQ-CRILSTAYLRPTTSCLHVYPHAIA 1037 (1092)
Q Consensus       960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~Dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~ 1037 (1092)
                      ..||+++..+...+..+|...|..+.|.|+.+ +|+||+.||.|++||.+.-+.. ..+.        .|..-|+  ++.
T Consensus       196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~--------~HsHWvW--~VR  265 (370)
T KOG1007|consen  196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP--------GHSHWVW--AVR  265 (370)
T ss_pred             EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC--------CCceEEE--EEE
Confidence            99999999998888899999999999999876 5789999999999999865443 2221        3455555  788


Q ss_pred             ECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001362         1038 AHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus      1038 ~~p~~~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
                      |+|-..+++++|+.|..|.+|.....
T Consensus       266 fn~~hdqLiLs~~SDs~V~Lsca~sv  291 (370)
T KOG1007|consen  266 FNPEHDQLILSGGSDSAVNLSCASSV  291 (370)
T ss_pred             ecCccceEEEecCCCceeEEEecccc
Confidence            99877799999999999999986543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.69  E-value=5.1e-16  Score=147.31  Aligned_cols=287  Identities=15%  Similarity=0.127  Sum_probs=198.8

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEc-ccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  469 (1092)
                      ++.+|.+.|+++.|-.+++ |.+|...|.|++|++.+...+.   .++ .|...|+.+.-.|++.   +.+-+.|+.+.+
T Consensus         9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~l   81 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLIL   81 (323)
T ss_pred             Eeccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEEE
Confidence            3778999999999988776 8899999999999999976554   455 5677899999999865   899999999999


Q ss_pred             EECCCCceeEEEecCCcCeEEEeecccC---C----ccEEEEEecCCe-EEEEEcCCCCceEEec----CCCCceEEEEE
Q 001362          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKE---N----IHFIFSISVDGK-IKAWLYDSLGARVDYD----APGLGCTRMAY  537 (1092)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~---~----~~~l~s~~~dg~-i~vwd~~~~~~~~~~~----~~~~~i~~~~~  537 (1092)
                      |++.-+..+.   .|.-.++++.|.+..   +    .+.++.-+.... +++-|......+....    ...+.+.+..+
T Consensus        82 w~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~  158 (323)
T KOG0322|consen   82 WTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK  158 (323)
T ss_pred             EEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence            9988765433   244445555443211   0    011111111100 1122222111222111    12234555443


Q ss_pred             c-cCCCEE-EEEecCCCCceeEEEEeCCCCeEEE----------EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001362          538 S-ANGRRL-FSCGTSKEGESFLVEWNESEGAIKR----------TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW  605 (1092)
Q Consensus       538 s-~dg~~l-~~~~~~~~~~~~i~iwd~~~~~~~~----------~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iw  605 (1092)
                      . .++.++ +.++   .+.+.+.+||+.++..+-          ....|.   .+|.++.+.+.-..=++|+.+..+..|
T Consensus       159 ~~~c~s~~lllaG---yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~---qpvlsldyas~~~rGisgga~dkl~~~  232 (323)
T KOG0322|consen  159 DHACGSTFLLLAG---YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK---QPVLSLDYASSCDRGISGGADDKLVMY  232 (323)
T ss_pred             cccccceEEEEEe---ccCCeEEEEEccCCceeeccccccccccchhhcc---CcceeeeechhhcCCcCCCccccceee
Confidence            2 244443 3333   236779999999984332          333444   889999998877777888888889999


Q ss_pred             ECCC--CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccc
Q 001362          606 DMNK--VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI  683 (1092)
Q Consensus       606 d~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  683 (1092)
                      +++.  +.+.......-..+.+..+..-||++.+|+++.|+.||||+..+.+++..+.-|...|.+++|+          
T Consensus       233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs----------  302 (323)
T KOG0322|consen  233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS----------  302 (323)
T ss_pred             eeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeC----------
Confidence            8764  3332211111223568899999999999999999999999999999999999999999999997          


Q ss_pred             cCCceeecCCCCCCCccceeeccccccceecc
Q 001362          684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKP  715 (1092)
Q Consensus       684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~  715 (1092)
                                  |+...++.++.|+.|.+|++
T Consensus       303 ------------pd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  303 ------------PDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ------------CCCchhhhccCCceEEeeec
Confidence                        66778899999999999985

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=3.5e-16  Score=159.30  Aligned_cols=199  Identities=17%  Similarity=0.196  Sum_probs=164.5

Q ss_pred             eEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc
Q 001362          806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG  884 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~  884 (1092)
                      .+++|+.+|..++++. ||++|||+..+...+.....|..+|.++.||| |+++|++-+.| ..+||+..+|..+.....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            7899999999999997 89999999988888888888999999999999 99999999999 899999999977776653


Q ss_pred             --ccCCeEEEEEcCCC-----CEEEEEeCCCcEEEEEcCCCceeee-eeeecCCCCcCCCCCceEEEEecCCCEEEE-Ee
Q 001362          885 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH  955 (1092)
Q Consensus       885 --h~~~V~~l~~spdg-----~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~  955 (1092)
                        -......+.|+.|+     ..++....-+.|+.|++........ +..+....+.    .|++++.|+||+++|. +.
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~----siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK----SISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC----cceeEEEcCCCcEEEEecc
Confidence              23356678898887     4444555667788888765443111 1112222222    5999999999999999 58


Q ss_pred             CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001362          956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       956 d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
                      ||.|-|++..+.+++......|...|+.+.|+||.+++++.+.|..+.|..+.-.
T Consensus       302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence            9999999999999999888899999999999999999999999999999887763

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=8.1e-15  Score=164.37  Aligned_cols=303  Identities=17%  Similarity=0.205  Sum_probs=208.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC-CCCCCceEEEcc--CCCEEEEEeCCCeEEEEECCCCc
Q 001362          579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNK--NGTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       579 ~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      .+...+.|+|-...++++.+.-.|++||.+.++.+..+.... ....|..+.+-.  |..++.+++.||.|+||+--...
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            345677899999999999988999999999999988876442 223467777654  56678888888888888643210


Q ss_pred             eeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccc
Q 001362          656 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN  735 (1092)
Q Consensus       656 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~  735 (1092)
                      .                                        +...++++                               
T Consensus      1145 ~----------------------------------------~~~eLVTa------------------------------- 1153 (1387)
T KOG1517|consen 1145 W----------------------------------------KKPELVTA------------------------------- 1153 (1387)
T ss_pred             c----------------------------------------CCceeEEe-------------------------------
Confidence            0                                        00001111                               


Q ss_pred             cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001362          736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1092)
Q Consensus       736 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~  815 (1092)
                            |++-...+.+...-|                                                 .-+.|-....
T Consensus      1154 ------w~~Ls~~~~~~r~~~-------------------------------------------------~v~dWqQ~~G 1178 (1387)
T KOG1517|consen 1154 ------WSSLSDQLPGARGTG-------------------------------------------------LVVDWQQQSG 1178 (1387)
T ss_pred             ------eccccccCccCCCCC-------------------------------------------------eeeehhhhCC
Confidence                  110000000011111                                                 1123333333


Q ss_pred             EEEEEe-CCeEEEEEcCCceeeEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc---eeeEeeccccCC--
Q 001362          816 YLFSAS-GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR--  888 (1092)
Q Consensus       816 ~l~~~s-dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~~--  888 (1092)
                      +|++++ -..|+|||.........+.. ....++++.-+...|+++++|..||.|++||.+..   ..+...+.|+..  
T Consensus      1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred             eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence            444444 47899999988777776654 34567888776656799999999999999998764   356778889988  


Q ss_pred             eEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCc
Q 001362          889 VTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL  967 (1092)
Q Consensus       889 V~~l~~spdg~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~  967 (1092)
                      |..+.+-+.|- .|++|+.||.|++||+..........+   ..+...++..+++..+++...+|+|+.+.|+||++.. 
T Consensus      1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i---v~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G- 1334 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI---VAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG- 1334 (1387)
T ss_pred             ceeEEeecCCCcceeeeccCCeEEEEecccCccccccee---eeccccCccceeeeeccCCCeeeecCcceEEEEecCh-
Confidence            99999988764 499999999999999987432221111   1222122358899999999999998779999999863 


Q ss_pred             eeeeee------ccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001362          968 TCLKQW------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       968 ~~~~~~------~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
                      +.+..+      .....+.+.+++|.|---+||+|+.|.+|.||....+.
T Consensus      1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            333221      11236778999999999999999999999999877654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.67  E-value=1.7e-14  Score=138.90  Aligned_cols=242  Identities=13%  Similarity=0.141  Sum_probs=174.6

Q ss_pred             CCCCCeeEEEEecCCC----EEEEEeCCeEEEEEcCCce--e--eEEe-----cCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001362          800 NSQEAVPCFALSKNDA----YLFSASGGVISLYIVMTFK--T--ILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDS  866 (1092)
Q Consensus       800 ~~~~~v~~~~~s~dg~----~l~~~sdg~i~iwd~~~~~--~--~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg  866 (1092)
                      .|..+++.+.|.|+.+    -++..++..+|+|.+...+  .  ...+     ..+..++++..|+.-+.+++.+.+-|-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT  173 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT  173 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence            4899999999999874    2333456789999987322  1  1111     235568999999987889999999999


Q ss_pred             cEEEEEcCCce---eeEeeccccCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEE
Q 001362          867 TILIYNARSSE---VISKLEGHSKRVTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI  942 (1092)
Q Consensus       867 ~v~iwd~~~~~---~~~~l~~h~~~V~~l~~spdg-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l  942 (1092)
                      +..|||++++.   +..+|-+|..+|..++|+.++ +.+||+|.||.||++|+..-+-.  ..+......   ..+...+
T Consensus       174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--TIIYE~p~~---~~pLlRL  248 (364)
T KOG0290|consen  174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--TIIYEDPSP---STPLLRL  248 (364)
T ss_pred             eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--eEEecCCCC---CCcceee
Confidence            99999999863   467888999999999999865 68999999999999999874422  233222221   1357889


Q ss_pred             EEecCC-CEEEE-EeC-CcEEEEEcCCceeeeeeccCCCCCEEEEEEecC-CCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001362          943 QFHKDQ-TRFLL-VHE-THLAIYEAEELTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       943 ~~s~dg-~~la~-~~d-~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      +|++.. +++|+ +.| ..|.|.|++.....-.-+.+|.+.|..++|.|. +..|.|+|.|..+.+||+...-......+
T Consensus       249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP  328 (364)
T KOG0290|consen  249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP  328 (364)
T ss_pred             ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence            998755 56777 444 579999998655444447789999999999995 56899999999999999987543111111


Q ss_pred             ccccCCCCccCcccceEEEECCCCCCEEEEEeC
Q 001362         1019 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1051 (1092)
Q Consensus      1019 ~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~ 1051 (1092)
                      .....   .++.|.  .+.|+|..++.++.+..
T Consensus       329 ilay~---a~~EVN--qi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  329 ILAYT---AGGEVN--QIQWSSSQPDWIAICFG  356 (364)
T ss_pred             hhhhh---ccceee--eeeecccCCCEEEEEec
Confidence            11111   134565  45677656677776654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=9.8e-15  Score=165.89  Aligned_cols=235  Identities=12%  Similarity=0.116  Sum_probs=162.6

Q ss_pred             CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCccc
Q 001362          356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDAR  432 (1092)
Q Consensus       356 d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~  432 (1092)
                      +..|.|||........                    +..|...+.+++|||||++||+++.+   ..|++||+.+++...
T Consensus       183 ~~~i~i~d~dg~~~~~--------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~  242 (429)
T PRK01742        183 PYEVRVADYDGFNQFI--------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV  242 (429)
T ss_pred             eEEEEEECCCCCCceE--------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence            4689999987654321                    56688899999999999999988643   479999998875322


Q ss_pred             ceEEEcccccceeEEEEecCCCcEEEEE-EeCCCcEEEE--ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe-cC
Q 001362          433 QQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VD  508 (1092)
Q Consensus       433 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s-~~~d~~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d  508 (1092)
                       ...+.+|   ...++|+|||+.  |+. .+.+|.+.||  |+.+++ +..+..+...+....|++  ||+.|+..+ .+
T Consensus       243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~  313 (429)
T PRK01742        243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS  313 (429)
T ss_pred             -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence             2223333   446899999994  554 4567765555  666665 455666777777788854  667666554 67


Q ss_pred             CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001362          509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       509 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p  588 (1092)
                      |...+|+++..........+..  ....|+|||++++..+.     ..+.+||+.+++........     ....+.|+|
T Consensus       314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sP  381 (429)
T PRK01742        314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF-----LDESPSISP  381 (429)
T ss_pred             CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC-----CCCCceECC
Confidence            8889998765433222222222  45789999999988764     23777999988765333222     234578999


Q ss_pred             CCCEEEEEeCCCcEEEEEC--CCCceEEEEeCCCCCCCCceEEEccC
Q 001362          589 AKDQILAAGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNKN  633 (1092)
Q Consensus       589 ~~~~l~~~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1092)
                      ++++++.++.++...+|.+  .+|.....+..+.  ..+...+|+|-
T Consensus       382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~  426 (429)
T PRK01742        382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY  426 (429)
T ss_pred             CCCEEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence            9999999999998888875  3577777776543  34778889874

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.65  E-value=2.9e-13  Score=147.92  Aligned_cols=318  Identities=10%  Similarity=0.126  Sum_probs=201.6

Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001362          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  633 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1092)
                      ++.|.+.|..+.+.+..+....   ..-..+.++||++++++++.||.|.++|+.+++.+.++.....   ...+++++|
T Consensus        15 ~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---~~~i~~s~D   88 (369)
T PF02239_consen   15 SGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---PRGIAVSPD   88 (369)
T ss_dssp             GTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---EEEEEE--T
T ss_pred             CCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---cceEEEcCC
Confidence            6679999999999999998644   3344578999999999999999999999999999999976533   578999999


Q ss_pred             CCEEEEEe-CCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001362          634 GTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1092)
Q Consensus       634 ~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l  712 (1092)
                      |++++++. ..+.+.++|..+.+.+..+.......                                             
T Consensus        89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~---------------------------------------------  123 (369)
T PF02239_consen   89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV---------------------------------------------  123 (369)
T ss_dssp             TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T---------------------------------------------
T ss_pred             CCEEEEEecCCCceeEeccccccceeecccccccc---------------------------------------------
Confidence            99998775 58999999999887776654211100                                             


Q ss_pred             eccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-CeeEEEeecCCCcCcCcccccccCCccccCCCCCce
Q 001362          713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF  791 (1092)
Q Consensus       713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~  791 (1092)
                                        .....++.++..++....++..-.+ +.+.+-|+....                      .+
T Consensus       124 ------------------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~----------------------~~  163 (369)
T PF02239_consen  124 ------------------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK----------------------NL  163 (369)
T ss_dssp             ------------------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS----------------------CE
T ss_pred             ------------------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc----------------------cc
Confidence                              0023456777778888766655554 666555543321                      01


Q ss_pred             eeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC----CCCCeEEEEEcCC---------CC
Q 001362          792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP----PSPTATSLAFNPH---------DN  856 (1092)
Q Consensus       792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~---------d~  856 (1092)
                      ....+   ..........|+|++++++++.  .+.|.++|.++++.+..+..    |..+...+ .+|.         .+
T Consensus       164 ~~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~  239 (369)
T PF02239_consen  164 KVTTI---KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLG  239 (369)
T ss_dssp             EEEEE---E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSS
T ss_pred             ceeee---cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeecccc
Confidence            11111   1234556789999999998875  57899999999988766532    33333322 1221         22


Q ss_pred             CEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE----eCCCcEEEEEcCCCceeeeeeeecCCCC
Q 001362          857 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS----GGDAQIFVWDVDGWGIQTCRSLQTPDGV  932 (1092)
Q Consensus       857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  932 (1092)
                      ...++.-....+.+||..+.+.++++....++ .-+.-+||++++...    ...++|.++|.++.+...  .+....+ 
T Consensus       240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~--~i~~~~~-  315 (369)
T PF02239_consen  240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK--TITPGPG-  315 (369)
T ss_dssp             SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE---HHHHHT-
T ss_pred             ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE--EEeccCC-
Confidence            33323333345667899999999999977666 778889999999987    455889999999853221  1211111 


Q ss_pred             cCCCCCceEEEEecCCCEEEEE---eCCcEEEEEcCCceeeeeec
Q 001362          933 MTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWF  974 (1092)
Q Consensus       933 ~~~~~~v~~l~~s~dg~~la~~---~d~~i~lwd~~~~~~~~~~~  974 (1092)
                          ..+..+.|++||+.+-++   .++.|.+||..+.+.+..+.
T Consensus       316 ----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  316 ----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             ------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             ----CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence                137899999999987763   34489999999999888743

...

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=6.3e-14  Score=160.08  Aligned_cols=256  Identities=13%  Similarity=0.106  Sum_probs=181.5

Q ss_pred             ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCC----CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc
Q 001362          392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT  466 (1092)
Q Consensus       392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~  466 (1092)
                      +..|...|..++.+++ +.++++||.||+|++|+...-    ...+...++..-..++.++.+.+.+.  .++.++.||.
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence            6679999999998875 499999999999999998632    22233333333466899999999999  6888899999


Q ss_pred             EEEEECCCC--ce-----eEEEec-CCcCeEEEe-ecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEE
Q 001362          467 IKVWDAVTG--SR-----TYSFEG-HGAPVYSLC-PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRM  535 (1092)
Q Consensus       467 i~vwd~~~~--~~-----~~~~~~-~~~~v~~~~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~  535 (1092)
                      |++.+++..  +.     .+.... ..+.+.++. +........++.+..-+.|..||.+.......  .....+.|+++
T Consensus      1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred             EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence            999998762  21     111111 223444443 33222224788899999999999988776554  34456689999


Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC---CCEEEEEe--CCCcEEEEECCCC
Q 001362          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAG--DDHVIKIWDMNKV  610 (1092)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~s--~dg~i~iwd~~~~  610 (1092)
                      +.+|-+.+++.|..    .|.+.+||++=+..+.......  ..++..+..+|-   ....++++  ..+.|.+|++.+|
T Consensus      1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence            99999999999976    6679999999888887765443  356776666654   34555544  5788999999999


Q ss_pred             ceEEEEeCCCCC-----------------CCCceEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001362          611 QLLTTIDAGGGL-----------------PENPRICFNKNGTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       611 ~~~~~~~~~~~~-----------------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      ....++......                 ......++...+..+.+|+.|..|+.||.....
T Consensus      1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence            877766543110                 011223344456788999999999999988653

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.65  E-value=1.3e-12  Score=142.93  Aligned_cols=332  Identities=15%  Similarity=0.161  Sum_probs=208.1

Q ss_pred             cEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE
Q 001362          455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR  534 (1092)
Q Consensus       455 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~  534 (1092)
                      .+++++-..++.|.|.|..+.+.+.++......-..+.+  ++|++++++++.||.|.++|+.+.+....+.... ...+
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~   82 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG   82 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence            346677788999999999999999999865544344555  5688899999999999999999999877776544 5678


Q ss_pred             EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc----cCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 001362          535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNK  609 (1092)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~  609 (1092)
                      +++|+||++++++...   .+.+.++|..+.+.++.+.....    ....+.++..+|....++..- +.+.|.+-|...
T Consensus        83 i~~s~DG~~~~v~n~~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d  159 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYE---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD  159 (369)
T ss_dssp             EEE--TTTEEEEEEEE---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEcCCCCEEEEEecC---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence            9999999999987642   55799999999999988765431    124577888888888665554 458888888877


Q ss_pred             CceEE--EEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCC
Q 001362          610 VQLLT--TIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  686 (1092)
Q Consensus       610 ~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  686 (1092)
                      .+.+.  .+...   .......|+|++++++++ ..+..|.++|..+++....+.....                     
T Consensus       160 ~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~---------------------  215 (369)
T PF02239_consen  160 PKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKK---------------------  215 (369)
T ss_dssp             SSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSS---------------------
T ss_pred             ccccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceEEEEeecccc---------------------
Confidence            65443  33322   235689999999988775 4467888999887654432221000                     


Q ss_pred             ceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCC
Q 001362          687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN  766 (1092)
Q Consensus       687 ~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~  766 (1092)
                                                                   .|..+...+ ..|..-           .+|.    
T Consensus       216 ---------------------------------------------p~~~~~~~~-php~~g-----------~vw~----  234 (369)
T PF02239_consen  216 ---------------------------------------------PHPGPGANF-PHPGFG-----------PVWA----  234 (369)
T ss_dssp             ---------------------------------------------BEETTEEEE-EETTTE-----------EEEE----
T ss_pred             ---------------------------------------------ccccccccc-cCCCcc-----------eEEe----
Confidence                                                         011122111 111111           0111    


Q ss_pred             CcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE-EEeCCeEEEEEcCCceeeEEecCCCCC
Q 001362          767 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SASGGVISLYIVMTFKTILTIMPPSPT  845 (1092)
Q Consensus       767 ~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~-~~sdg~i~iwd~~~~~~~~~~~~~~~~  845 (1092)
                                                                 .+..+...+ ..+.+.+.+||..+++.++++......
T Consensus       235 -------------------------------------------~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g  271 (369)
T PF02239_consen  235 -------------------------------------------TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG  271 (369)
T ss_dssp             -------------------------------------------EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred             -------------------------------------------eccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence                                                       111122221 122345567888889999998876666


Q ss_pred             eEEEEEcCCCCCEEEEE----eCCCcEEEEEcCCceeeEeecccc-CCeEEEEEcCCCCEEEEEeCC--CcEEEEEcCCC
Q 001362          846 ATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVSSGGD--AQIFVWDVDGW  918 (1092)
Q Consensus       846 i~~l~~s~~d~~~lasg----~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~s~s~D--g~i~iwd~~~~  918 (1092)
                       .-+..+| +++++.+.    ...++|.++|.++.+.+..+.... ..+..+.|++||+.+..+..+  +.|.|||..+.
T Consensus       272 -lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl  349 (369)
T PF02239_consen  272 -LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL  349 (369)
T ss_dssp             ---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred             -ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence             7888899 88899887    455799999999998888876433 358999999999977655443  36999999997


Q ss_pred             ceee
Q 001362          919 GIQT  922 (1092)
Q Consensus       919 ~~~~  922 (1092)
                      +...
T Consensus       350 ~~~~  353 (369)
T PF02239_consen  350 KEKK  353 (369)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6554

...

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=2.3e-15  Score=153.33  Aligned_cols=198  Identities=21%  Similarity=0.205  Sum_probs=151.2

Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001362          847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL  926 (1092)
Q Consensus       847 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  926 (1092)
                      .+++|+. +|..|++|+.||++|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||++.++-...   -
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a---~  222 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA---R  222 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh---h
Confidence            7899999 89999999999999999999888888888899999999999999999999999 79999999973221   1


Q ss_pred             ecCCCCcCCCCCceEEEEecCC---CE-EEEE--eCCcEEEEEcCCcee-----eeeeccCCCCCEEEEEEecCCCEEEE
Q 001362          927 QTPDGVMTLAPSETHIQFHKDQ---TR-FLLV--HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT  995 (1092)
Q Consensus       927 ~~~~~~~~~~~~v~~l~~s~dg---~~-la~~--~d~~i~lwd~~~~~~-----~~~~~~~h~~~v~~l~fs~dg~~l~t  995 (1092)
                      .++.+..   .....+.|+.|+   .+ +++.  .-+.|..|++.....     .++.. .....|++++.|+||++++.
T Consensus       223 ~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~Al  298 (398)
T KOG0771|consen  223 KTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLAL  298 (398)
T ss_pred             cCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEE
Confidence            1111111   247789999888   33 3332  335677766643222     11111 12457999999999999999


Q ss_pred             EECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001362          996 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus       996 ~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
                      |+.||.|.|++..+.+...-+.       ..|..-|  ..+.|+| |.+++++.+.|.+..+..+.-.
T Consensus       299 GT~dGsVai~~~~~lq~~~~vk-------~aH~~~V--T~ltF~P-dsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQYVK-------EAHLGFV--TGLTFSP-DSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             eccCCcEEEEEeceeeeeEeeh-------hhheeee--eeEEEcC-CcCcccccccCCceeEEEEeec
Confidence            9999999999998887663332       2245544  4789999 6899999999999999988653

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.63  E-value=5.6e-14  Score=156.95  Aligned_cols=252  Identities=17%  Similarity=0.160  Sum_probs=181.7

Q ss_pred             CCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcc--cc-eEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001362          395 PGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA--RQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       395 h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~--~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      -...|.|++|+| +..++|.|..+|.|.+||+..+...  .. ......|..+++.+.|..+-...-+++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            467999999999 6778888899999999999877651  11 1123468899999999776442248999999999999


Q ss_pred             ECCCCce------eEEEe------cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--------eEEecCCCC
Q 001362          471 DAVTGSR------TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGL  530 (1092)
Q Consensus       471 d~~~~~~------~~~~~------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~~~~  530 (1092)
                      +++.-..      .....      .-...++++.|.+. +-..++.|+.+|.|.--.....+.        ...+..|.+
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g  399 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG  399 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence            8764322      11111      12245778888765 446799999999988733322221        225566778


Q ss_pred             ceEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 001362          531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMN  608 (1092)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~s~dg~i~iwd~~  608 (1092)
                      +|.++.++|-+..++..+.    +-++++|... ....+..+..+.   ..+.+++|+|....+ +++..||.+.+||+.
T Consensus       400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence            9999999998876665543    6679999987 555555555555   669999999987554 557789999999997


Q ss_pred             CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001362          609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      ....-......-.....+.+.|+++|+.|++|...|.+.+|++...
T Consensus       473 ~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  473 QDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            5443332222222345678889999999999999999999999754

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=5.4e-14  Score=157.91  Aligned_cols=297  Identities=14%  Similarity=0.182  Sum_probs=206.6

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC--CCC
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGS  409 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~  409 (1092)
                      +.......+.|+|-.. .++++...-.|+|||.+.++.+..+.-                -......|+.+.+-.  |..
T Consensus      1062 ~n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n----------------~~~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDN----------------GAFPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred             cCCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccC----------------CCCCCCccceeeeecccchh
Confidence            3334567788999887 567776667899999999988754211                112346788888876  678


Q ss_pred             EEEEEeCCCEEEEEEccCC--Cc---ccceEEEccc----ccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001362          410 LLGVAYSKHIVQLYAYHGG--SD---ARQQLEIDAH----VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~--~~---~~~~~~~~~h----~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      ++++|+.||.|+||+--..  +.   +.....+.++    .+.=.-+.|-....  .|+++|.-..|+|||.....+++.
T Consensus      1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred             heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEee
Confidence            9999999999999975322  11   1111112221    11113356766666  566666688999999998888877


Q ss_pred             Eec-CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCc--eEEEEEccCCCE-EEEEecCCCC
Q 001362          481 FEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLG--CTRMAYSANGRR-LFSCGTSKEG  553 (1092)
Q Consensus       481 ~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~--i~~~~~s~dg~~-l~~~~~~~~~  553 (1092)
                      +.. ....|+++.-... .|..++.|..||.|++||.+....   +..+..|...  |..+.+-+.|-. |++++.    
T Consensus      1203 iP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~---- 1277 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ---- 1277 (1387)
T ss_pred             cccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----
Confidence            643 4456777765433 368999999999999999876543   4455666665  999999887765 888876    


Q ss_pred             ceeEEEEeCCCCeEEEEEe--eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----CCCCCCc
Q 001362          554 ESFLVEWNESEGAIKRTYQ--GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENP  626 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~  626 (1092)
                      +|.|++||++.......+.  .|..-.+..+++..++....+++|+. +.|.||++... .+..+..+     .....+.
T Consensus      1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~s 1355 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVS 1355 (1387)
T ss_pred             CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccccCcccccCcCCCcc
Confidence            5559999998753222221  11100124899999999999999988 99999998643 33333221     1234578


Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001362          627 RICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      +++|+|-.-++|+|+.|..|.||.....
T Consensus      1356 cL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1356 CLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             eeeecchhHhhhhccCCceEEEeecCCc
Confidence            9999999999999999999999987654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.63  E-value=7.7e-11  Score=121.53  Aligned_cols=103  Identities=11%  Similarity=0.069  Sum_probs=81.5

Q ss_pred             CCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC----cEEEEEcCCc
Q 001362          802 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSS  876 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~  876 (1092)
                      -+.|.++..++||++++++.+ ..+.+.|+.++.....-+...+-|+.++|+| +++++|.+--+|    .|++||+.++
T Consensus       401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCC
Confidence            456778888999998888876 7788999998887666666778899999999 999999988777    7899999998


Q ss_pred             eeeEeeccccCCeEEEEEcCCCCEEEEEeC
Q 001362          877 EVISKLEGHSKRVTGLVFSDALNILVSSGG  906 (1092)
Q Consensus       877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~  906 (1092)
                      +....-. ..+.=.+-+|.||+++|..-+.
T Consensus       480 Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         480 KIYDVTT-PTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             eEEEecC-CcccccCcccCCCCcEEEEEec
Confidence            8655443 2333456789999999876553

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.62  E-value=5.6e-12  Score=143.04  Aligned_cols=200  Identities=16%  Similarity=0.164  Sum_probs=156.8

Q ss_pred             cceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe--EEEeecccCCccEEEEEecCCeEEEEEcCCC
Q 001362          442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKENIHFIFSISVDGKIKAWLYDSL  519 (1092)
Q Consensus       442 ~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  519 (1092)
                      +.|....+..+.+  .++.+..++.+.+||...+..+..+.......  .++.+-.+.+.-++++|+.-+.|.+|++...
T Consensus        88 ~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d  165 (967)
T KOG0974|consen   88 DWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED  165 (967)
T ss_pred             ccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence            3344456666666  57777778899999998887776665332221  1122223445578999999999999999855


Q ss_pred             CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE-EEeeccccCCceEEEEEcCCCCEEEEEeC
Q 001362          520 GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGD  598 (1092)
Q Consensus       520 ~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~s~  598 (1092)
                      .....+.+|.+.|..+.++.||+++++++.    +..+++|++.+++... ..-+|.   ..+..++|.|+  .++++++
T Consensus       166 n~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~~fgHs---aRvw~~~~~~n--~i~t~ge  236 (967)
T KOG0974|consen  166 NKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCTGFGHS---ARVWACCFLPN--RIITVGE  236 (967)
T ss_pred             CCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCccccccc---ceeEEEEeccc--eeEEecc
Confidence            555578999999999999999999999987    5669999999998876 556666   89999999998  8999999


Q ss_pred             CCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001362          599 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       599 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      |-+.++|+.+. ..+..+..|.. ..+..++..++...+++++.|+.+++|++...
T Consensus       237 dctcrvW~~~~-~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  237 DCTCRVWGVNG-TQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             ceEEEEEeccc-ceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            99999997654 44446666654 45899999999999999999999999998753

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=7.5e-16  Score=168.67  Aligned_cols=339  Identities=19%  Similarity=0.209  Sum_probs=222.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCcCccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCC----CCcCcccc
Q 001362          171 RLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSS----MLTDSAVS  246 (1092)
Q Consensus       171 rL~~Ll~qa~~~q~~~c~~~~~~~~~~sL~~dh~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  246 (1092)
                      -|..|+.|++++|+.+|+.|.++++++|||.+|+|++               |.+..+.+-++..+..    ..++.++ 
T Consensus      1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPE---------------pk~~~~ap~N~t~Rl~~rel~~~y~gV- 1077 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPE---------------PKRLLEAPLNMTGRLGTRELQSFYSGV- 1077 (1516)
T ss_pred             cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCC---------------hHHHhhcchhhhhcccchhhcCccccc-
Confidence            3999999999999999999999999999999999998               3333333222222210    0011111 


Q ss_pred             cccccCCCCCcccccccCCCCCCcccCCCccccccccCCcceecCcccCCcCCCCCCCchhhhcccccCCccccCCCcce
Q 001362          247 FVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV  326 (1092)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~  326 (1092)
                                                                     |+.       ....+.+|.++          ..
T Consensus      1078 -----------------------------------------------~g~-------~~dr~~IFSRF----------r~ 1093 (1516)
T KOG1832|consen 1078 -----------------------------------------------HGN-------RRDRQFIFSRF----------RS 1093 (1516)
T ss_pred             -----------------------------------------------ccC-------cccchhhHhhc----------cc
Confidence                                                           110       00111122222          12


Q ss_pred             eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001362          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      .++++.|...-+|++||-+.+ .|++|+..|.|+++++.+|.....                   ...|..+|+.+.-|.
T Consensus      1094 w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~ 1153 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSV 1153 (1516)
T ss_pred             chhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccccccccccccccC
Confidence            366788999999999999988 699999999999999999988765                   567999999999999


Q ss_pred             CCCEEEEEeCC--CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ec
Q 001362          407 DGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG  483 (1092)
Q Consensus       407 dg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~  483 (1092)
                      ||..+++.+.-  ....+|++.+-  ....+++.    .-.++.|+..... .++ |.....+.+||++|+..+.++ .+
T Consensus      1154 dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~-r~~-gt~~d~a~~YDvqT~~~l~tylt~ 1225 (1516)
T KOG1832|consen 1154 DGSTQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF-RAL-GTEADDALLYDVQTCSPLQTYLTD 1225 (1516)
T ss_pred             CcceeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH-HHh-cccccceEEEecccCcHHHHhcCc
Confidence            99988776543  35789999752  22222332    3457889877553 333 333356899999999887663 22


Q ss_pred             ---CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001362          484 ---HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       484 ---~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                         ....-+...|+|.  ..+++   .||  .+||.+..+.+..+.... ....-.|+|.|..++..+         .||
T Consensus      1226 ~~~~~y~~n~a~FsP~--D~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS---------EIw 1288 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSPC--DTLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS---------EIW 1288 (1516)
T ss_pred             chhhhhhccccccCCC--cceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec---------hhh
Confidence               1222245556553  34444   344  469998887666554333 112235899999998864         479


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe--C---------------CCcEEEEECCCCceEEEEeCCCCCC
Q 001362          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--D---------------DHVIKIWDMNKVQLLTTIDAGGGLP  623 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s--~---------------dg~i~iwd~~~~~~~~~~~~~~~~~  623 (1092)
                      |+++.+.++......     -..+.|+..|+.++..-  .               -...|-++..+.+.+.++....   
T Consensus      1289 D~RTF~lLh~VP~Ld-----qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R--- 1360 (1516)
T KOG1832|consen 1289 DMRTFKLLHSVPSLD-----QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDR--- 1360 (1516)
T ss_pred             hhHHHHHHhcCcccc-----ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeeccc---
Confidence            999998887766544     35677888887665432  0               0234556666666777776543   


Q ss_pred             CCceEEEccCCCEEEEEeC
Q 001362          624 ENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       624 ~v~~v~~s~~~~~l~~~~~  642 (1092)
                      .+..+|-+|...++++...
T Consensus      1361 ~~~Dlct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1361 CLLDLCTEPTDSFLGVIEM 1379 (1516)
T ss_pred             chhhhhcCCccceEEEEec
Confidence            3566777777777766543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=2.8e-14  Score=162.23  Aligned_cols=232  Identities=18%  Similarity=0.195  Sum_probs=152.6

Q ss_pred             ccCCCcceeeecccCCCCceEEeecCCCceEEEEEcCC---CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCC
Q 001362          319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP  395 (1092)
Q Consensus       319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d---~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h  395 (1092)
                      +.+......+.+..|...+..++|||||+++ |..+.+   ..|.+||+.+++......                 +.+|
T Consensus       188 i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~l-a~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~  249 (429)
T PRK01742        188 VADYDGFNQFIVNRSSQPLMSPAWSPDGSKL-AYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH  249 (429)
T ss_pred             EECCCCCCceEeccCCCccccceEcCCCCEE-EEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc
Confidence            3444444567788888899999999999964 554432   469999999886432111                 2233


Q ss_pred             CCcEEEEEECCCCCEEEEEe-CCCEEEEE--EccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001362          396 GVSVNRVVWSPDGSLLGVAY-SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~-~d~~i~iw--d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~  472 (1092)
                         ...++|||||++|++++ .+|.+.||  |+.++.. .   .+..+...+...+|+|||+. +++++..++...||++
T Consensus       250 ---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~  321 (429)
T PRK01742        250 ---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRM  321 (429)
T ss_pred             ---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEE
Confidence               34689999999998875 57765555  6655542 2   45567777889999999995 3334456788888876


Q ss_pred             CCC-ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001362          473 VTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       473 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      ... .....+ .+..  ....|  ++||+.|+..+.++ +.+||+.++........  .....+.|+|||++++.++.++
T Consensus       322 ~~~~~~~~~l-~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g  393 (429)
T PRK01742        322 SASGGGASLV-GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQG  393 (429)
T ss_pred             ECCCCCeEEe-cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCC
Confidence            532 222333 3433  34455  55778888887765 45599887765433222  1335678999999999987633


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001362          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA  589 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~  589 (1092)
                      . ...+++++ .+|..++.+..+.   +.+...+|+|-
T Consensus       394 ~-~~~l~~~~-~~G~~~~~l~~~~---g~~~~p~wsp~  426 (429)
T PRK01742        394 L-GKVLQLVS-ADGRFKARLPGSD---GQVKFPAWSPY  426 (429)
T ss_pred             C-ceEEEEEE-CCCCceEEccCCC---CCCCCcccCCC
Confidence            2 22333444 3577777787666   67788888874

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.61  E-value=1.7e-09  Score=131.50  Aligned_cols=509  Identities=12%  Similarity=0.125  Sum_probs=286.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEE----EccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001362          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iw----d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      ..+.|.++.|-+|...|+.+..+|.|.+.    +..+..    ......-...|.+++||||+.  +|+....++++.+-
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~----~E~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m  147 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE----IEIVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM  147 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce----eEEEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence            55789999999999999999999999999    444422    112334566899999999999  56666667888776


Q ss_pred             ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEc----------CCCCc----eEEecCCCCceEEEE
Q 001362          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY----------DSLGA----RVDYDAPGLGCTRMA  536 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~----------~~~~~----~~~~~~~~~~i~~~~  536 (1092)
                      + .+-..+....-+.....         ....++.+..+.=.-+.=          +....    ...+. ....-..++
T Consensus       148 t-~~fd~i~E~~l~~~~~~---------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~IS  216 (928)
T PF04762_consen  148 T-RDFDPISEVPLDSDDFG---------ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRIS  216 (928)
T ss_pred             e-ccceEEEEeecCccccC---------CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEE
Confidence            5 55555554433321110         012222221111000000          00000    00111 223456789


Q ss_pred             EccCCCEEEEEecCCC-C-ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCc
Q 001362          537 YSANGRRLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQ  611 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~---dg~i~iwd~~~~~  611 (1092)
                      |-.||.++++.+.+.. + ...+++|+.+ |.+..+.....   +--.+++|-|.|+.+++...   ...|.+|.. +|-
T Consensus       217 WRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGL  291 (928)
T PF04762_consen  217 WRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGL  291 (928)
T ss_pred             ECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCc
Confidence            9999999998876332 2 5889999965 76655554333   45567899999999888653   455667764 444


Q ss_pred             eEEEEeCC--CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCcee
Q 001362          612 LLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS  689 (1092)
Q Consensus       612 ~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  689 (1092)
                      .-..+...  .....|..+.|++|+..||+...|. |.+|...+-...-...-        .+.                
T Consensus       292 rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei--------~~~----------------  346 (928)
T PF04762_consen  292 RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEI--------RFS----------------  346 (928)
T ss_pred             EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEE--------Ecc----------------
Confidence            44444433  2334689999999999999988765 99998876643322110        000                


Q ss_pred             ecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCC-cEEEEeecCCeeEEEeecCCCc
Q 001362          690 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDL  768 (1092)
Q Consensus       690 ~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~lw~~~~~~~  768 (1092)
                                                                 ....+..+.|+|.. ..|...+.+|.+..+++..   
T Consensus       347 -------------------------------------------~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~---  380 (928)
T PF04762_consen  347 -------------------------------------------SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW---  380 (928)
T ss_pred             -------------------------------------------CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE---
Confidence                                                       01112225555533 3355555556666555421   


Q ss_pred             CcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec-CCCEEEEEeCCeEEEEEcCCceee-----EEecCC
Q 001362          769 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTI-----LTIMPP  842 (1092)
Q Consensus       769 ~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~-dg~~l~~~sdg~i~iwd~~~~~~~-----~~~~~~  842 (1092)
                                     ++..+.                   ..+| |...+++..+.++.+-.+...-..     ..+. .
T Consensus       381 ---------------~v~~s~-------------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~  425 (928)
T PF04762_consen  381 ---------------DVSRSP-------------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-L  425 (928)
T ss_pred             ---------------EEEecC-------------------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-C
Confidence                           111110                   0111 222344444556777666543221     2222 3


Q ss_pred             CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee--------eEeec----------cccCCeEEEEEcCCCCEEEEE
Q 001362          843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------ISKLE----------GHSKRVTGLVFSDALNILVSS  904 (1092)
Q Consensus       843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--------~~~l~----------~h~~~V~~l~~spdg~~l~s~  904 (1092)
                      ...|.+++|++ ++..+|+-..||.+.+|.......        ...+.          .-...+..++|..+...++..
T Consensus       426 ~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (928)
T PF04762_consen  426 PSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLS  504 (928)
T ss_pred             CCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEE
Confidence            46899999999 677799999999999998644321        11111          123457888998887777766


Q ss_pred             eCC---CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCC
Q 001362          905 GGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVP  980 (1092)
Q Consensus       905 s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~  980 (1092)
                      ..+   ..+.++++...+...  .........   ..+..+...++...++. ..+|.+..++..........++. .-.
T Consensus       505 ~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~-~c~  578 (928)
T PF04762_consen  505 DSDSNQSKIVLVDIDDSENSA--SVESSTEVD---GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ-PCP  578 (928)
T ss_pred             ecCcccceEEEEEeccCCCce--eEEEEeccC---ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC-CCc
Confidence            654   578888885432111  111111111   13455555555553444 67888887766543322211211 222


Q ss_pred             EEEEEEecCCC---EEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEE
Q 001362          981 ISQATFSCDCR---MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1057 (1092)
Q Consensus       981 v~~l~fs~dg~---~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~ 1057 (1092)
                      ...++...+..   .++.-+..|.+++    ++..++              ..+.  +++.+   +.+|+.......+++
T Consensus       579 ~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la--------------~~~t--SF~v~---~~~Ll~TT~~h~l~f  635 (928)
T PF04762_consen  579 WMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA--------------SNCT--SFAVT---DSFLLFTTTQHTLKF  635 (928)
T ss_pred             EEEEEEECCccceeEEEEECCCCEEEE----CCEEEe--------------cCCc--eEEEE---cCEEEEEecCceEEE
Confidence            23333333333   3443333444443    344431              1233  44455   367888888899999


Q ss_pred             EeCC
Q 001362         1058 IEPN 1061 (1092)
Q Consensus      1058 w~~~ 1061 (1092)
                      .++.
T Consensus       636 v~L~  639 (928)
T PF04762_consen  636 VHLN  639 (928)
T ss_pred             EECc
Confidence            9997

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.61  E-value=9.1e-14  Score=145.16  Aligned_cols=169  Identities=11%  Similarity=0.154  Sum_probs=126.8

Q ss_pred             ecCCCEEEEEe-CCeEEEEEcCCceeeEEec----CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC----------
Q 001362          811 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------  875 (1092)
Q Consensus       811 s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~----------  875 (1092)
                      .+.+--+.++- -|.+.+.|....+..+.+.    -....++|+.|-|.+...++++-.+|.+++||..-          
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence            45666666665 4888888876522211111    12368999999997777888889999999997531          


Q ss_pred             ----ce--------------eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCC
Q 001362          876 ----SE--------------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP  937 (1092)
Q Consensus       876 ----~~--------------~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  937 (1092)
                          +.              ++..+.--.+.|...+|||||++||+.|.||.+||+|+.+.+     ++.......   +
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYF---G  333 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYF---G  333 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhc---c
Confidence                11              122222234578889999999999999999999999999844     333333333   3


Q ss_pred             CceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEec
Q 001362          938 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC  988 (1092)
Q Consensus       938 ~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~  988 (1092)
                      ...+++|||||++|++ |.|.-|.||.....+.+.. -.+|...|+.++|.|
T Consensus       334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP  384 (636)
T ss_pred             ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc
Confidence            7899999999999999 6889999999999988886 678999999999987

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=7.6e-13  Score=131.67  Aligned_cols=288  Identities=16%  Similarity=0.170  Sum_probs=190.0

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CCCEEEEE
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVA  414 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~  414 (1092)
                      .+..++|++.-. -+|++..|-.|++||-.....-.-                   -......|+|++|-| .++-|++|
T Consensus       100 dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~L-------------------ks~sQrnvtclawRPlsaselavg  159 (445)
T KOG2139|consen  100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTKL-------------------KSVSQRNVTCLAWRPLSASELAVG  159 (445)
T ss_pred             ceeeEeechhhh-hhhhhccCcEEEEeccCCCCCcee-------------------cchhhcceeEEEeccCCcceeeee
Confidence            677888888543 478888999999999776322211                   112456899999999 46778888


Q ss_pred             eCCCEEEEEEccCCCcc-----------cceEEEcccccceeEEEEecCCCcEEEEEEeC-CCcEEEEECCCCceeEEEe
Q 001362          415 YSKHIVQLYAYHGGSDA-----------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~-----------~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~~  482 (1092)
                      +..| |.||....-...           .+...-.+| .+|+++.|.+||.  .+++++. |..|.|||..+|..+....
T Consensus       160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~  235 (445)
T KOG2139|consen  160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP  235 (445)
T ss_pred             ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence            8877 999987532111           111223355 5899999999999  6777774 5689999999998776554


Q ss_pred             cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE--
Q 001362          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW--  560 (1092)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw--  560 (1092)
                      ...+.+.-+.|+|  |+.+|+.++-|+..++|+....-.........+.|...+|+|+|++|+.....   ...++-.  
T Consensus       236 ~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f  310 (445)
T KOG2139|consen  236 KGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTF  310 (445)
T ss_pred             cCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEee
Confidence            4556777888855  77899999999999999655443333344444589999999999987765431   2223221  


Q ss_pred             eCCCCeE-----------------EEEEeeccccCCceEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCceEEE
Q 001362          561 NESEGAI-----------------KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------VIKIWDMNKVQLLTT  615 (1092)
Q Consensus       561 d~~~~~~-----------------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg--------~i~iwd~~~~~~~~~  615 (1092)
                      +-+.+..                 +....+...-.+.+.+++|.|.|.++++.-..+        .|.+||...--.+..
T Consensus       311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel  390 (445)
T KOG2139|consen  311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL  390 (445)
T ss_pred             cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence            1111110                 011112122246788999999999999865333        366788765444333


Q ss_pred             EeC-CCCCCCCceEEEcc---CCCEEEEEeCCCeEEEEECC
Q 001362          616 IDA-GGGLPENPRICFNK---NGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       616 ~~~-~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      ... .........++|+|   ++.+|.++-..|.+.-|.+.
T Consensus       391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            311 11112245677776   67888888888888777654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.60  E-value=1.2e-13  Score=157.91  Aligned_cols=362  Identities=12%  Similarity=0.078  Sum_probs=223.9

Q ss_pred             CceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCc---cccccccCC
Q 001362          654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS---ECQSLLLPS  730 (1092)
Q Consensus       654 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~---~~~~~~~~~  730 (1092)
                      |..+..+..|...+..++.+                     ++++.++++|+.||+|++|+...-...   ....+.+  
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s---------------------~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-- 1094 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVS---------------------SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-- 1094 (1431)
T ss_pred             ceEeehhhhccccccceeec---------------------CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE--
Confidence            44555666677777666666                     577799999999999999996532222   1111111  


Q ss_pred             ccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001362          731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  810 (1092)
Q Consensus       731 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~  810 (1092)
                      ....+++.++...+.+..+++++.||.|++.++.....    ...           .+.+.....+.  ....-+..-+|
T Consensus      1095 s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~----~~~-----------~~~~~ri~n~~--~~g~vv~m~a~ 1157 (1431)
T KOG1240|consen 1095 SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV----SKR-----------VATQVRIPNLK--KDGVVVSMHAF 1157 (1431)
T ss_pred             eccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc----ccc-----------eeeeeeccccc--CCCceEEeecc
Confidence            12467889999999999999999999999998865311    000           01111111111  11222333333


Q ss_pred             ecC-CC-EEEEEeC-CeEEEEEcCCceeeEEec--CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec-c
Q 001362          811 SKN-DA-YLFSASG-GVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-G  884 (1092)
Q Consensus       811 s~d-g~-~l~~~sd-g~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~  884 (1092)
                      ... +. .++.+.+ +.|..||+.......+++  ...+.|++++.+| .+.++++|+..|.+.+||++-+.++..+. +
T Consensus      1158 ~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P 1236 (1431)
T KOG1240|consen 1158 TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHP 1236 (1431)
T ss_pred             cccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCc
Confidence            332 23 5555554 889999998776665554  3457899999999 89999999999999999999988887775 3


Q ss_pred             ccCCeEEEEEcCCC---CEEEEEe--CCCcEEEEEcCCCceeeeeeeecCCCCc-----------CCCCCceEEEEecCC
Q 001362          885 HSKRVTGLVFSDAL---NILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVM-----------TLAPSETHIQFHKDQ  948 (1092)
Q Consensus       885 h~~~V~~l~~spdg---~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~l~~s~dg  948 (1092)
                      +..+|..+...|-.   ...++++  ..+.|.+|++.+|...............           +........++...+
T Consensus      1237 ~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~ 1316 (1431)
T KOG1240|consen 1237 ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN 1316 (1431)
T ss_pred             ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC
Confidence            55788888877643   4555554  4678999999998655432222000000           000122333444445


Q ss_pred             CEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcE-EEEEcC-----CCceEEeeccccc
Q 001362          949 TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEAS-----NLEVQCRILSTAY 1021 (1092)
Q Consensus       949 ~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i-~vwd~~-----~~~~~~~~~~~~~ 1021 (1092)
                      .++.+ ++|..|+.||....+...-...+.+.......++.+ .-++.++.--.. ......     .+...........
T Consensus      1317 ~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~ 1395 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPS 1395 (1431)
T ss_pred             ceeeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchhhcccccccccCCC
Confidence            55666 789999999998665442222332333333333332 223333221000 111111     1222344455666


Q ss_pred             cCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001362         1022 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus      1022 ~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
                      .++..|.++|..++....+  ..++++++.||.|.+|.
T Consensus      1396 ~ps~~H~d~Itdma~~~~~--q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1396 DPSTYHHDPITDMATLKSE--QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             CCcccccchhhhhhhhccC--ccEEEEecCCCeeeecC
Confidence            7777789999988888776  47999999999999994

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=3.7e-12  Score=125.14  Aligned_cols=239  Identities=14%  Similarity=0.203  Sum_probs=169.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEccccc--ceeEEEEecCCCcEEEEEEeC-----CCcEEEE
Q 001362          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NVNDLAFSAPCKQISVITCGD-----DKTIKVW  470 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~s~d~~~l~l~s~~~-----d~~i~vw  470 (1092)
                      ...+++|+.|..-+++|..+| .+||+.+--+...   .-..+.+  .+..+-|  -.+.+.|+-|+.     -..|.||
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW   80 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW   80 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence            445599999999999998888 8999987522211   1111222  2222333  234334444443     2479999


Q ss_pred             ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCC--CceEEEEEccCCCEEEEE
Q 001362          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPG--LGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~--~~i~~~~~s~dg~~l~~~  547 (1092)
                      |=...+++.++. ...+|.++.+...    .|+.. ..+.|.||.+. ..+....+....  ....+++-..+...|+.-
T Consensus        81 DD~k~~~i~el~-f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP  154 (346)
T KOG2111|consen   81 DDLKERCIIELS-FNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP  154 (346)
T ss_pred             ecccCcEEEEEE-eccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence            977788888886 7789999998542    44443 56789999987 444444444332  233333333333344443


Q ss_pred             ecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceEEEEeCCCCCCC
Q 001362          548 GTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPE  624 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~  624 (1092)
                      +   ...|.|++-|+...+.  ...+..|.   ..|.+++.+.+|..++++|..|+ |||||..+|..+..+........
T Consensus       155 g---~k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~  228 (346)
T KOG2111|consen  155 G---FKTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD  228 (346)
T ss_pred             C---CccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence            3   2357799999876555  36677777   99999999999999999999988 79999999999999987666677


Q ss_pred             CceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001362          625 NPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       625 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      |.+++|||+..+||++++.|++.|+.+...
T Consensus       229 iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  229 IYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            999999999999999999999999998764

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.59  E-value=1.7e-13  Score=153.23  Aligned_cols=257  Identities=17%  Similarity=0.197  Sum_probs=186.8

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCee--EEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~--~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      ..+.- ..+|+|++|+|....++|.|..+|.|.+||+..+...  ...               ......|..+|+.+.|-
T Consensus       237 ~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l---------------s~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  237 LVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL---------------SALEVSHSEPVTAVVWL  300 (555)
T ss_pred             EEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc---------------ccccccCCcCeEEEEEe
Confidence            33333 3499999999999889999999999999999987652  211               11255699999999998


Q ss_pred             CCC--CEEEEEeCCCEEEEEEccCCCcccceEEE--c-------ccccceeEEEEecCCCcEEEEEEeCCCcEEEEE---
Q 001362          406 PDG--SLLGVAYSKHIVQLYAYHGGSDARQQLEI--D-------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---  471 (1092)
Q Consensus       406 pdg--~~las~~~d~~i~iwd~~~~~~~~~~~~~--~-------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd---  471 (1092)
                      .+-  .-+++++.||.|..|++..-........+  .       .-...+++++|.+...+ .++.|+.+|.|..=+   
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccC
Confidence            754  44999999999999988643321111011  1       12236899999998776 788899999988733   


Q ss_pred             CCCCc-----eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCCCceEEEEEccCCCEEE
Q 001362          472 AVTGS-----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       472 ~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      ...+.     .+..+..|.++|+++.++|-.. ..+.+++ |-++++|.-. ...+...+..+...+++++|||-...++
T Consensus       380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF  457 (555)
T KOG1587|consen  380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF  457 (555)
T ss_pred             CcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence            22222     1335567889999999877543 3444444 9999999887 5666667777777799999999887777


Q ss_pred             EEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001362          546 SCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  609 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~  609 (1092)
                      ++.   +++|.+.+||+.....  +.+.....   .....+.|+++|+.+++|...|++.+|++..
T Consensus       458 ~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  458 ATV---DGDGNLDIWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             EEE---cCCCceehhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            665   4578899999875432  22322222   5667788999999999999999999999864

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=2e-14  Score=148.35  Aligned_cols=295  Identities=14%  Similarity=0.144  Sum_probs=221.4

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      |.+|.+.|..+.|...|..|++|+.|..|.+||+.++......  ..||...|....|-|...-..+++++.||.+++=.
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            7789999999999999999999999999999999988755432  34899999888898865444799999999999876


Q ss_pred             CC-CCce--eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCC---ceEEEEEccCCC
Q 001362          472 AV-TGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGL---GCTRMAYSANGR  542 (1092)
Q Consensus       472 ~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~---~i~~~~~s~dg~  542 (1092)
                      +. ++.+  ...+..|.++|.-++..|.. -.-|.+++.|+.+.-.|++.......+..   +..   ....++..|...
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt  294 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT  294 (559)
T ss_pred             eccccceecceecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence            54 3433  34556799999999886643 35789999999999999987665433321   222   456788888776


Q ss_pred             -EEEEEecCCCCceeEEEEeCCCCeE------EEEEeeccc---cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--C
Q 001362          543 -RLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQL---QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V  610 (1092)
Q Consensus       543 -~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~~~---~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~--~  610 (1092)
                       .+++++.    +..+++||.+.-..      +..+..+..   ..-.|++++|+.++.-+++...|-.|+++...-  |
T Consensus       295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G  370 (559)
T KOG1334|consen  295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG  370 (559)
T ss_pred             cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence             5566654    56788998764322      222222211   123589999998888888888899999995432  2


Q ss_pred             ----------ceEEE-EeCCCCCCCCceEEE-ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcc
Q 001362          611 ----------QLLTT-IDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  678 (1092)
Q Consensus       611 ----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  678 (1092)
                                ..+.. ..+|.....|..+-| -|...++++|++=|.|.||+-.+++.+..+.+-..-|.|+.-+|.   
T Consensus       371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~---  447 (559)
T KOG1334|consen  371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH---  447 (559)
T ss_pred             CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC---
Confidence                      11222 455655555777765 578999999999999999999999999999988888888877754   


Q ss_pred             ccccccCCceeecCCCCCCCccceeeccccccceecc
Q 001362          679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP  715 (1092)
Q Consensus       679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~  715 (1092)
                                         -..|++++-|..|+||..
T Consensus       448 -------------------~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  448 -------------------LPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             -------------------CchhhccCCccceeeecC
Confidence                               455788889999999985

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.58  E-value=4e-11  Score=136.25  Aligned_cols=200  Identities=15%  Similarity=0.153  Sum_probs=151.2

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      .|....+.-+.+ .++.+..+..+.+||...+.......       .+.+..        -....-+.++++.-++++|+
T Consensus        89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~-------~~er~~--------l~~~~~~g~s~~~~~i~~gs  152 (967)
T KOG0974|consen   89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQ-------SDERCT--------LYSSLIIGDSAEELYIASGS  152 (967)
T ss_pred             cccccchhhhcc-eEEEEEcCceEEEEecccCceehhcC-------CCceEE--------EEeEEEEeccCcEEEEEecc
Confidence            344455555555 47778888999999998876654210       000000        01233355788888999999


Q ss_pred             CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE-EEecCCcCeEEEeec
Q 001362          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPH  494 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~  494 (1092)
                      .-+.|.+|+......-   ..+.||.+.|.++.|+.||+  ++++.|.|.++++|++++++.+. ..-+|+..|..++|.
T Consensus       153 v~~~iivW~~~~dn~p---~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~  227 (967)
T KOG0974|consen  153 VFGEIIVWKPHEDNKP---IRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL  227 (967)
T ss_pred             ccccEEEEeccccCCc---ceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence            9999999999833211   14789999999999999999  89999999999999999998876 667899999999996


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001362          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      +.    .+++++.|-+.++|+.+..... .+..|. ..+..++..++...+++++.    ++.+++|+....
T Consensus       228 ~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  228 PN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR  290 (967)
T ss_pred             cc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence            53    8999999999999976544333 555554 47899999998888888876    566999987643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=2.2e-14  Score=149.62  Aligned_cols=245  Identities=13%  Similarity=0.179  Sum_probs=170.0

Q ss_pred             eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001362          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      ..+.|.||++-|+|++|+.||. +|++||.|-.+.|||....+.+..                  +-+||...|.++.|-
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFv  102 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFV  102 (758)
T ss_pred             hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeee
Confidence            3467899999999999999998 899999999999999987766653                  367899999999999


Q ss_pred             C--CCCEEEEEeCCCEEEEEEccCCC-------cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001362          406 P--DGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1092)
Q Consensus       406 p--dg~~las~~~d~~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  476 (1092)
                      |  +.+.+++|..|..|+++|+...+       ...+...+..|...|..++-.|++.. .+.+++.||+|+-+|++...
T Consensus       103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCc
Confidence            9  57888999999999999998521       12223345679999999999999965 79999999999999987632


Q ss_pred             -eeE---------EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-----ecCCCCceEEEE-EccC
Q 001362          477 -RTY---------SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMA-YSAN  540 (1092)
Q Consensus       477 -~~~---------~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~i~~~~-~s~d  540 (1092)
                       +..         .+...--...++.++|.. ..+|+.|+.|-..++||.+.......     ...+.....++. |+|.
T Consensus       182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~  260 (758)
T KOG1310|consen  182 VCNPDEDCPSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG  260 (758)
T ss_pred             cCCccccccHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence             111         111111234567777763 47999999999999999543221110     011111122222 2222


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001362          541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  616 (1092)
Q Consensus       541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~  616 (1092)
                      +-    ..              ..|.....       ...++.++|+|+|.-++..-....|+++|+..++.....
T Consensus       261 hl----kn--------------~~gn~~~~-------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  261 HL----KN--------------SQGNLDRY-------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             cc----cC--------------cccccccc-------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            11    00              00111000       023667899999988888666678999999887765544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=5e-12  Score=136.15  Aligned_cols=510  Identities=12%  Similarity=0.140  Sum_probs=301.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCc------------ccceEEEcccccceeEEEEecCCCcEEEEEEe
Q 001362          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG  462 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~------------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~  462 (1092)
                      ......|++|+....|+|+|+.||.+++-.+.+...            +....++.||.+.|.-+.|+.+.+  .|-|..
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD   90 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD   90 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence            456789999999999999999999999998875422            111235789999999999998887  689999


Q ss_pred             CCCcEEEEECCCCceeEEEe--cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC
Q 001362          463 DDKTIKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN  540 (1092)
Q Consensus       463 ~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d  540 (1092)
                      .+|.|.||-+-.|.-...+.  .....|.+++|  +.||..+.....||.|.+=.++..+ +.--...+.....+.|++|
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D  167 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSED  167 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeeccc
Confidence            99999999988776554332  24456788888  4577888888888888776554322 1111122223456889999


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCCC-------eEEEEEeec-cccCCceEEEEEc--------CCCCEEEEEeCCCcEEE
Q 001362          541 GRRLFSCGTSKEGESFLVEWNESEG-------AIKRTYQGL-QLQHNSVSVVHFD--------TAKDQILAAGDDHVIKI  604 (1092)
Q Consensus       541 g~~l~~~~~~~~~~~~i~iwd~~~~-------~~~~~~~~~-~~~~~~v~~~~~~--------p~~~~l~~~s~dg~i~i  604 (1092)
                      .+.++.+-.    ++.+.++|.+..       .+.....+. ......+..+.|.        |+...++++-.+|.+.|
T Consensus       168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi  243 (1189)
T KOG2041|consen  168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI  243 (1189)
T ss_pred             HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence            988877654    444888886532       111111111 0001224444443        57889999999999988


Q ss_pred             EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe---------EEEEECCCCceeeecccccCceeeeeecCC
Q 001362          605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR---------IKILETPESNSVDAAGVLSDNLRKLSVNPI  675 (1092)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~---------i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~  675 (1092)
                      -.-.+......+...   ..+....|+++|..||+++.+..         |.+|. .-|..+..++.+..          
T Consensus       244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~----------  309 (1189)
T KOG2041|consen  244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS----------  309 (1189)
T ss_pred             hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc----------
Confidence            765544433333322   34778899999999999987531         22211 11222333333333          


Q ss_pred             CccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC
Q 001362          676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN  755 (1092)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  755 (1092)
                                                                                  .|+++.|-..|-+++. .-|
T Consensus       310 ------------------------------------------------------------~It~lsWEg~gLriA~-Avd  328 (1189)
T KOG2041|consen  310 ------------------------------------------------------------CITGLSWEGTGLRIAI-AVD  328 (1189)
T ss_pred             ------------------------------------------------------------eeeeeEEcCCceEEEE-Eec
Confidence                                                                        3444444443332222 222


Q ss_pred             CeeEEEeecCCCc----------CcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCe
Q 001362          756 GVHLMWRWPRNDL----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV  824 (1092)
Q Consensus       756 g~i~lw~~~~~~~----------~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~  824 (1092)
                      +.|++=++...-.          ...+.......+..||..+.+....       .-....+++++.+--.|+.-. ++.
T Consensus       329 sfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~  401 (1189)
T KOG2041|consen  329 SFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGV  401 (1189)
T ss_pred             ceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCC
Confidence            2333322211100          0011111123455677666553322       223455677776655555544 355


Q ss_pred             EEEEEc-CCceeeEEec----------CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee---------------
Q 001362          825 ISLYIV-MTFKTILTIM----------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---------------  878 (1092)
Q Consensus       825 i~iwd~-~~~~~~~~~~----------~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~---------------  878 (1092)
                      +.-++. ++...+..+.          ..-..|.-.-..- ++..++.++.+ .+.+|.....+.               
T Consensus       402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~  479 (1189)
T KOG2041|consen  402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRF  479 (1189)
T ss_pred             CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccc
Confidence            544422 1111111110          0001122111122 56677777765 477786532211               


Q ss_pred             -----------------eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceE
Q 001362          879 -----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH  941 (1092)
Q Consensus       879 -----------------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  941 (1092)
                                       ..++.|..++|.+++.|  .++|..+-..|.|.-+.+...-.     .....-.    ..+.+
T Consensus       480 h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l-----~n~y~~n----~~~y~  548 (1189)
T KOG2041|consen  480 HGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVL-----TNSYPVN----PSIYS  548 (1189)
T ss_pred             cCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceee-----eeccccC----chhee
Confidence                             13455667788888876  57888899999999999987432     2222222    35889


Q ss_pred             EEEecCCCEEEE-EeCCcEEEEEcC---CceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001362          942 IQFHKDQTRFLL-VHETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       942 l~~s~dg~~la~-~~d~~i~lwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
                      ++.+.+...+|+ -.-|.+.+.|+.   +|..+.-+.......|+.+.|..|...|+.--....++|++-.
T Consensus       549 ~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgn  619 (1189)
T KOG2041|consen  549 IKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGN  619 (1189)
T ss_pred             EeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCc
Confidence            999999998887 455777777765   4555554555567789999998887766655444556666543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=1.5e-12  Score=129.53  Aligned_cols=260  Identities=12%  Similarity=0.113  Sum_probs=165.3

Q ss_pred             cccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC
Q 001362          734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN  813 (1092)
Q Consensus       734 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~d  813 (1092)
                      ...|++++|-|.+..-++.+..+.|.+|........       ...++   ..+..+...  +..++| ..|+++.+.+|
T Consensus       140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln~-------~r~~~---~~s~~~~qv--l~~pgh-~pVtsmqwn~d  206 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA-------NRNIR---MMSTHHLQV--LQDPGH-NPVTSMQWNED  206 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecceeEEEEcCccccc-------ccccc---cccccchhh--eeCCCC-ceeeEEEEcCC
Confidence            346788888887776777777778899986543210       00011   011111112  222335 78999999999


Q ss_pred             CCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEE
Q 001362          814 DAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG  891 (1092)
Q Consensus       814 g~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  891 (1092)
                      |..+++++  +..|.|||..++..+.-.....+.++-+.||| |+.+|+.++-|+..++|+...........--.+.|+.
T Consensus       207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt  285 (445)
T KOG2139|consen  207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT  285 (445)
T ss_pred             CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence            99999998  57899999999887766555567889999999 8999999999999999965543333333334568999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcee----------eeeeee------cCCCCcCCCCCceEEEEecCCCEEEEEe
Q 001362          892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQ----------TCRSLQ------TPDGVMTLAPSETHIQFHKDQTRFLLVH  955 (1092)
Q Consensus       892 l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~----------~~~~~~------~~~~~~~~~~~v~~l~~s~dg~~la~~~  955 (1092)
                      .+|+|+|.+|..+.. |.=++|.+.-.+..          ....+.      ...+.....+.+.+++|.|.|.+||+..
T Consensus       286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f  364 (445)
T KOG2139|consen  286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF  364 (445)
T ss_pred             eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence            999999988765543 23345554321100          001111      1112111225789999999999999953


Q ss_pred             C---------CcEEEEEcCCceeeeeeccCC--CCCEEEEEEec---CCCEEEEEECCCcEEEEEcC
Q 001362          956 E---------THLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       956 d---------~~i~lwd~~~~~~~~~~~~~h--~~~v~~l~fs~---dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
                      .         ..|.+||....-.+...+.+-  ......++|.|   +|.+|..+=+-|.+.-|++.
T Consensus       365 Kg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  365 KGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             cCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            2         236677766544333222221  22345567766   66777777677777777654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.57  E-value=1.1e-12  Score=128.68  Aligned_cols=241  Identities=12%  Similarity=0.168  Sum_probs=168.9

Q ss_pred             CCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCC--CeEEEEEcCCCCCEEE-EEeCC------CcEEEEEc
Q 001362          803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP--TATSLAFNPHDNNVIA-IGMDD------STILIYNA  873 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~d~~~la-sg~~d------g~v~iwd~  873 (1092)
                      ....+++|.-|...++++.+...+||+++..+.....+.+.+  .+..+-|-   .++|| +|+.+      ..|.|||=
T Consensus         6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence            345569999999999999999999999987554333222222  33334443   23444 44433      38999997


Q ss_pred             CCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001362          874 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       874 ~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~  953 (1092)
                      ...+++.++. ...+|.++.+++|  .++.. -.+.|+||.+...-.. ...+.+.....    ...+++=.....+||.
T Consensus        83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~-l~~~et~~NPk----GlC~~~~~~~k~~Laf  153 (346)
T KOG2111|consen   83 LKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKL-LHVIETRSNPK----GLCSLCPTSNKSLLAF  153 (346)
T ss_pred             ccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhh-eeeeecccCCC----ceEeecCCCCceEEEc
Confidence            6677888877 7788999999876  55554 3567999999853211 12222222111    1222222233344554


Q ss_pred             -E-eCCcEEEEEcCCcee-eeeeccCCCCCEEEEEEecCCCEEEEEECCCc-EEEEEcCCCceEEeeccccccCCCCccC
Q 001362          954 -V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCL 1029 (1092)
Q Consensus       954 -~-~d~~i~lwd~~~~~~-~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1092)
                       | .-|+|+|-|+...+. ......+|...|.+++.+-+|..|||+|..|+ |||||..+|+.++.++... .     ..
T Consensus       154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d-----~A  227 (346)
T KOG2111|consen  154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-D-----RA  227 (346)
T ss_pred             CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-c-----hh
Confidence             4 448999999986665 23457789999999999999999999999998 8999999999999987222 1     22


Q ss_pred             cccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001362         1030 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1030 ~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
                      .|+  +++|+| +..+||++++-|+|++|.+.+..
T Consensus       228 ~iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  228 DIY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             eEE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence            345  889999 58999999999999999997755

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.56  E-value=8.2e-13  Score=129.56  Aligned_cols=232  Identities=15%  Similarity=0.177  Sum_probs=175.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC-C
Q 001362          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-V  473 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~-~  473 (1092)
                      -..+|+|.||++|+..+|++-....|.||............++..|...|+.++|+|.+.  .|++|+.|...+||.. .
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence            346999999999999999999999999999998887777788999999999999999998  6999999999999997 3


Q ss_pred             CC--ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE----EecCCCCceEEEEEccCCCEEEEE
Q 001362          474 TG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       474 ~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      .+  +..-.+..+....+++.|+|.+  ..+++|+....|.||-++....-.    .-......|.++.|+|++-+|++|
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            33  3344556688899999997654  689999999999999877655432    233445678999999999999998


Q ss_pred             ecCCCCceeEEEEeC-----CC-------------CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001362          548 GTSKEGESFLVEWNE-----SE-------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  609 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~-----~~-------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~  609 (1092)
                      +.    |+..+++..     +.             |+++..+..   ..+.+..+.|+|+|+.|+-.+.|.++.+-|...
T Consensus       165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~---~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS---SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc---CCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence            86    334555532     11             222333332   247899999999999999999999999999877


Q ss_pred             Cc-eEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001362          610 VQ-LLTTIDAGGGLPENPRICFNKNGTLLAV  639 (1092)
Q Consensus       610 ~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~  639 (1092)
                      .. .+.......  -+..++.|-.+...+++
T Consensus       238 p~~~v~~~~~~~--lP~ls~~~ise~~vv~a  266 (361)
T KOG1523|consen  238 PSERVQSVATAQ--LPLLSVSWISENSVVAA  266 (361)
T ss_pred             Cchhccchhhcc--CCceeeEeecCCceeec
Confidence            65 233332221  23455666554443333

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.8e-12  Score=146.79  Aligned_cols=238  Identities=10%  Similarity=0.119  Sum_probs=157.5

Q ss_pred             CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe---CCCEEEEEEccCCCcccc
Q 001362          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---SKHIVQLYAYHGGSDARQ  433 (1092)
Q Consensus       357 ~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~---~d~~i~iwd~~~~~~~~~  433 (1092)
                      ..|.+||...+....                    +..+...+.+.+|||||+.||..+   .+..|.+|++.+|+... 
T Consensus       179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-  237 (429)
T PRK03629        179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-  237 (429)
T ss_pred             eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence            368888887665432                    444677899999999999999764   24579999998875322 


Q ss_pred             eEEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC-Ce
Q 001362          434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK  510 (1092)
Q Consensus       434 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~  510 (1092)
                         +....+.+...+|+|||+.+ +++.+.++  .|.+||+++++..+ +..+...+....|+  +||+.|+..+.+ |.
T Consensus       238 ---l~~~~~~~~~~~~SPDG~~L-a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wS--PDG~~I~f~s~~~g~  310 (429)
T PRK03629        238 ---VASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWF--PDSQNLAYTSDQAGR  310 (429)
T ss_pred             ---ccCCCCCcCCeEECCCCCEE-EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEEC--CCCCEEEEEeCCCCC
Confidence               22233345578999999952 33334444  58999998887654 33344556677774  577777766654 55


Q ss_pred             EEEE--EcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001362          511 IKAW--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       511 i~vw--d~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p  588 (1092)
                      ..+|  |+.++.. ..+...........|+|||++++..+... +...|++||+.+++... +...    .......|+|
T Consensus       311 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~-Lt~~----~~~~~p~~Sp  383 (429)
T PRK03629        311 PQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQV-LTDT----FLDETPSIAP  383 (429)
T ss_pred             ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEE-eCCC----CCCCCceECC
Confidence            5555  5554433 33333444556789999999998876432 35579999998887543 3321    1234568999


Q ss_pred             CCCEEEEEeCCCc---EEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001362          589 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       589 ~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      ||+.++.++.++.   +.++++ +|.....+..+.  ..+...+|+|
T Consensus       384 DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp  427 (429)
T PRK03629        384 NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP  427 (429)
T ss_pred             CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence            9999999887764   677777 455555555432  2467788876

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.55  E-value=1.8e-14  Score=147.72  Aligned_cols=272  Identities=16%  Similarity=0.177  Sum_probs=214.0

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001362          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  474 (1092)
                      .......+.++.+|++|+.|+..|.|..+|+.++....   ++. -...|.++.|..+.+  +++ ....+.++||| ..
T Consensus       128 ~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~A-VAQK~y~yvYD-~~  199 (545)
T KOG1272|consen  128 PEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFA-VAQKKYVYVYD-NN  199 (545)
T ss_pred             cccCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHH-hhhhceEEEec-CC
Confidence            34567789999999999999999999999999986554   332 345688999998877  444 45577899999 88


Q ss_pred             CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001362          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      |..++.++.| ..|..+.|.|..  -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-.|..    +
T Consensus       200 GtElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----n  272 (545)
T KOG1272|consen  200 GTELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----N  272 (545)
T ss_pred             CcEEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----C
Confidence            8888888755 467888886654  57888999999999999999999888888888999999998888877765    7


Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001362          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      ++|.+|.+.+.+.+..+..|.   ++|.++++.++|.++++++.|..++|||++....+.+...+.   ....+++|..|
T Consensus       273 GtVSlWSP~skePLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkg  346 (545)
T KOG1272|consen  273 GTVSLWSPNSKEPLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PASNLSLSQKG  346 (545)
T ss_pred             ceEEecCCCCcchHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Ccccccccccc
Confidence            789999999999999999988   999999999999999999999999999999888776665432   35778888766


Q ss_pred             CEEEEEeCCCeEEEEECCCC-----ceeeecccccCceeeeeecCCCccccccccCCcee
Q 001362          635 TLLAVIANENRIKILETPES-----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS  689 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  689 (1092)
                      . ||. +....+.||.-...     .....-......|..+.|+|....+++|-..|-..
T Consensus       347 l-LA~-~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ts  404 (545)
T KOG1272|consen  347 L-LAL-SYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITS  404 (545)
T ss_pred             c-eee-ecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCcee
Confidence            3 333 33457889953321     11111112234889999999999888877665333

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=5.3e-11  Score=128.39  Aligned_cols=533  Identities=10%  Similarity=0.090  Sum_probs=321.0

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      ...|++|+.... ++|+|+.||.++|-.+.+...-....    -+...........+.||.+.|.-+.|+.+.+.|-+..
T Consensus        16 kL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD   90 (1189)
T KOG2041|consen   16 KLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD   90 (1189)
T ss_pred             eEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence            678999999988 69999999999999987654322100    0112222333446899999999999999999999999


Q ss_pred             CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-EEEecCCcCeEEEeec
Q 001362          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~  494 (1092)
                      .+|.|.+|-+-.|.-..... -......|.+++|+.||.  .++....||.|.|=.++..+.- +.+++.  ....+.| 
T Consensus        91 t~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~w-  164 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLW-  164 (1189)
T ss_pred             CCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccceee-
Confidence            99999999998876544321 123556799999999999  6777788888877654433221 122221  1223455 


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCC-------ceE----EecCCCCceEEEEE--------ccCCCEEEEEecCCCCce
Q 001362          495 AKENIHFIFSISVDGKIKAWLYDSLG-------ARV----DYDAPGLGCTRMAY--------SANGRRLFSCGTSKEGES  555 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~----~~~~~~~~i~~~~~--------s~dg~~l~~~~~~~~~~~  555 (1092)
                       ++|.+.++.+-.+|.++++|.+..-       +..    .+......+..+.|        -||...++.+..    ++
T Consensus       165 -s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----nG  239 (1189)
T KOG2041|consen  165 -SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----NG  239 (1189)
T ss_pred             -cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----Cc
Confidence             4466677778888999999865321       111    11112223444444        257778888875    34


Q ss_pred             eEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceEEEEeCCCCCCCC
Q 001362          556 FLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1092)
Q Consensus       556 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1092)
                      .+.+....+ ..++..-.+     -.+....|+++|..+++++.+         +.|.+|. .-|..+.++..++.  .|
T Consensus       240 r~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~--~I  311 (1189)
T KOG2041|consen  240 RMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS--CI  311 (1189)
T ss_pred             eehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc--ee
Confidence            455543322 222222222     357788999999999998743         2455554 35677788877654  58


Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCCcee--------eecccccCceeeeeecCCCccccccccCCceeecCCCCCC
Q 001362          626 PRICFNKNGTLLAVIANENRIKILETPESNSV--------DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED  697 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  697 (1092)
                      ++++|-..|-.+|.+- |+.|++=+++..-..        ........+.                              
T Consensus       312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~------------------------------  360 (1189)
T KOG2041|consen  312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQ------------------------------  360 (1189)
T ss_pred             eeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcc------------------------------
Confidence            9999988777776654 567777665533111        1111111111                              


Q ss_pred             CccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccc
Q 001362          698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK  777 (1092)
Q Consensus       698 ~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~  777 (1092)
                                -.|.+||..+.+..-.         ......++++..+.-.|+.-..+|.+.-++.-.+.       ...
T Consensus       361 ----------y~i~Fwdtk~nek~vK---------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~-------~~~  414 (1189)
T KOG2041|consen  361 ----------YGIMFWDTKTNEKTVK---------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLENR-------SRV  414 (1189)
T ss_pred             ----------eEEEEEecccChhhhh---------hhcceeehheecccEEEEeccccCCCcchhhhhcc-------cce
Confidence                      2355676543322111         11233455666655555555555554433100000       000


Q ss_pred             cCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee----------------------
Q 001362          778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT----------------------  835 (1092)
Q Consensus       778 ~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~----------------------  835 (1092)
                      ..+.+.+.- |.     .+.  ..-..|.-.-..-++.+++.++...+.+|.....+.                      
T Consensus       415 ~~l~LCNSI-GT-----~lD--~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~  486 (1189)
T KOG2041|consen  415 YFLQLCNSI-GT-----SLD--YKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPE  486 (1189)
T ss_pred             EEEeeeccc-CC-----cCC--CCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCcc
Confidence            000000000 00     000  011122222333477788888888888887532110                      


Q ss_pred             ----------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEe
Q 001362          836 ----------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG  905 (1092)
Q Consensus       836 ----------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s  905 (1092)
                                ..++.+..++|.+++.+   .++|.++-..|.|.-|.+.+........ -+..|..+++.-+...+|...
T Consensus       487 ga~d~~l~ys~kt~~G~~DpICAl~~s---dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId  562 (1189)
T KOG2041|consen  487 GAQDRTLEYSTKTLLGSKDPICALCIS---DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIID  562 (1189)
T ss_pred             chhhceeeccceeeccCCCcceeeeec---ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhh
Confidence                      12345566788888886   4699999999999999999877666654 456688999988888999988


Q ss_pred             CCCcEEEEEcCC-CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCC
Q 001362          906 GDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE  966 (1092)
Q Consensus       906 ~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~  966 (1092)
                      .-|.+.+.|+.- ........+...+.     ..|..+.|..|+..+++- ....++|++-.+
T Consensus       563 ~~gv~tf~dLd~d~~g~ql~~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrgnd  620 (1189)
T KOG2041|consen  563 LVGVVTFQDLDYDFDGDQLKLIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRGND  620 (1189)
T ss_pred             hhceeeeeecccccCcceeeeeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecCcC
Confidence            889999988872 22222222222222     258899999998877774 445577777543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=2.7e-12  Score=146.58  Aligned_cols=237  Identities=13%  Similarity=0.071  Sum_probs=161.0

Q ss_pred             CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC---CCEEEEEEccCCCcccc
Q 001362          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ  433 (1092)
Q Consensus       357 ~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~  433 (1092)
                      ..|.+||...+....                    +..|...+.+.+|||||+.|+..+.   +..|.+||+.+++..  
T Consensus       182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--  239 (435)
T PRK05137        182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--  239 (435)
T ss_pred             eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence            478888886554332                    5568889999999999999998763   468999999987532  


Q ss_pred             eEEEcccccceeEEEEecCCCcEEEEEEeCCCc--EEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEec-CC-
Q 001362          434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG-  509 (1092)
Q Consensus       434 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg-  509 (1092)
                        .+..+.+.+.+.+|+|||+. ++++.+.++.  |.+||+.+++. ..+..+........|+  +||+.|+..+. +| 
T Consensus       240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~  313 (435)
T PRK05137        240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGS  313 (435)
T ss_pred             --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCC
Confidence              34456677889999999995 3445665655  77789888765 4455566556667774  56777776663 34 


Q ss_pred             -eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001362          510 -KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       510 -~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p  588 (1092)
                       .|.+||+....... +......+....|+|||+.|+...... +...|.+||..++.. +.+.. .   ..+....|+|
T Consensus       314 ~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~sp  386 (435)
T PRK05137        314 PQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAP  386 (435)
T ss_pred             CeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCce-EeccC-C---CCCCCCeECC
Confidence             57777876554433 333344566788999999998876432 346799999866543 33322 2   2456788999


Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001362          589 AKDQILAAGDD------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       589 ~~~~l~~~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      ||+.++..+.+      ..++++|+..+.. ..+...+   .+...+|+|
T Consensus       387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp  432 (435)
T PRK05137        387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP  432 (435)
T ss_pred             CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence            99998775532      3578888876554 3443221   255667766

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.1e-12  Score=148.71  Aligned_cols=234  Identities=14%  Similarity=0.106  Sum_probs=153.5

Q ss_pred             ccCCCcceeeecccCCCCceEEeecCCCceEEEEEc--CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC
Q 001362          319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG  396 (1092)
Q Consensus       319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~--~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~  396 (1092)
                      +.+......+.+..+.+.+...+|||||+.++.+..  .+..|.+||+.+|+...                    +....
T Consensus       183 ~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~  242 (429)
T PRK03629        183 VSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFP  242 (429)
T ss_pred             EEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCC
Confidence            344444444556667778999999999996544432  23579999999886543                    12223


Q ss_pred             CcEEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-CCc--EEEE
Q 001362          397 VSVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKT--IKVW  470 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~--i~vw  470 (1092)
                      +.+..++|||||+.|+.. +.++  .|.+||+.+++..    .+..+...+....|+|||+.  |+..+. ++.  |.++
T Consensus       243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~  316 (429)
T PRK03629        243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKV  316 (429)
T ss_pred             CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEE
Confidence            345568999999999876 3344  5999999887533    24445556788999999994  544443 344  5555


Q ss_pred             ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001362          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      |+.+++. ..+..+........|  ++||++|+..+.+   ..|.+||+.++.... +.. ........|+|||+.++..
T Consensus       317 d~~~g~~-~~lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~  391 (429)
T PRK03629        317 NINGGAP-QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYS  391 (429)
T ss_pred             ECCCCCe-EEeecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEE
Confidence            7776654 344334444555666  4577788776543   358888988765443 222 1233467899999999988


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001362          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p  588 (1092)
                      +.++. ...+++++. +|.....+.++.   +.+...+|+|
T Consensus       392 s~~~~-~~~l~~~~~-~G~~~~~l~~~~---~~~~~p~Wsp  427 (429)
T PRK03629        392 SSQGM-GSVLNLVST-DGRFKARLPATD---GQVKFPAWSP  427 (429)
T ss_pred             EcCCC-ceEEEEEEC-CCCCeEECccCC---CCcCCcccCC
Confidence            86443 456888887 455556666655   6677778876

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.54  E-value=1.3e-12  Score=128.30  Aligned_cols=206  Identities=14%  Similarity=0.133  Sum_probs=163.6

Q ss_pred             CCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCC---ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcC-C
Q 001362          801 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMT---FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-S  875 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~---~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~  875 (1092)
                      ...+|+|.+|++|+..+|++.. ..+.||....   .+..+++..|...|+.+.|+| ..+.|++++.|..-++|... .
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence            3568999999999999999975 6899998764   457889999999999999999 88899999999999999994 3


Q ss_pred             c--eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001362          876 S--EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       876 ~--~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~  953 (1092)
                      +  ++.-.+..|...++++.|+|.++.+|+||..+.|.||=++...  ...+-+......  ...|.+++|.|++-+|++
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN--dWWVsKhikkPi--rStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN--DWWVSKHIKKPI--RSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc--ceehhhhhCCcc--ccceeeeeccCCcceecc
Confidence            3  3455566699999999999999999999999999999887632  111111111111  136999999999999999


Q ss_pred             -EeCCcEEEEEcC-----C-------------ceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCce
Q 001362          954 -VHETHLAIYEAE-----E-------------LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus       954 -~~d~~i~lwd~~-----~-------------~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
                       +.|+..+|+..-     .             |+.+.++ ....+.|..+.|||+|..|+-.+.|+++.+=|......
T Consensus       164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~  240 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE  240 (361)
T ss_pred             cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch
Confidence             589998888641     1             2222222 13478899999999999999999999999999887753

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.53  E-value=4.1e-14  Score=145.09  Aligned_cols=273  Identities=18%  Similarity=0.189  Sum_probs=211.8

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      ....+.|+.+|++ ++.|+..|.|..+|+.++.+.....                    -...|..+.|-.+.+++|++ 
T Consensus       131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVA-  188 (545)
T KOG1272|consen  131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVA-  188 (545)
T ss_pred             CCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhh-
Confidence            6778999999995 5666777999999999998876533                    23578899999999999998 


Q ss_pred             CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001362          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  495 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  495 (1092)
                      ....++|||-.. ..+.   .++.| ..|..+.|.|---  +|++++..|.++--|+.+|+.+..+....+.+..++-+|
T Consensus       189 QK~y~yvYD~~G-tElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP  261 (545)
T KOG1272|consen  189 QKKYVYVYDNNG-TELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP  261 (545)
T ss_pred             hhceEEEecCCC-cEEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence            455699999765 3233   34444 4589999999765  899999999999999999999999988888888888765


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001362          496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1092)
Q Consensus       496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1092)
                      .+  ..+-+|...|+|.+|.....+++..+..|.++|.++++.++|+++++.+.    +..+.|||+++-..+.++.. .
T Consensus       262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t-p  334 (545)
T KOG1272|consen  262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT-P  334 (545)
T ss_pred             cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec-C
Confidence            43  57889999999999999999999999999999999999999999999987    56699999998877666655 2


Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCc--eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEE
Q 001362          576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  649 (1092)
Q Consensus       576 ~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  649 (1092)
                         .+...+++|..|  +++++....|.||. .-.+.  .-...-.|.....|..+.|.|-...|-+|...|--.|.
T Consensus       335 ---~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil  406 (545)
T KOG1272|consen  335 ---HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL  406 (545)
T ss_pred             ---CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence               467778888765  56666667899994 33322  11111112222368899999988888887766654443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=1.8e-12  Score=136.67  Aligned_cols=283  Identities=13%  Similarity=0.187  Sum_probs=204.6

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      +|...-+.+..||||+|++|+|..--.|++||+..-.+...+.+                   ....|.-.-+|-|-..+
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD~SK~  109 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDDYSKS  109 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccchhhh
Confidence            46668889999999999999999999999999987654432111                   23456666677776777


Q ss_pred             EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001362          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~  491 (1092)
                      +.-..|.+|.+..-.. ...    .+. -...-..++++.-...  |+.++....|+-.+++.|+.+..|....+.++++
T Consensus       110 v~L~~DR~IefHak~G-~hy----~~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v  181 (703)
T KOG2321|consen  110 VFLQNDRTIEFHAKYG-RHY----RTR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV  181 (703)
T ss_pred             eEeecCceeeehhhcC-eee----eee-cCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceee
Confidence            7777788776644322 111    011 1112234555544443  4444445578999999999999998888999999


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------C-----CceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001362          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------G-----LGCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~-----~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                      .+++.  ..+|++|+.+|.|.+||.+.......+...      .     ..|+++.|+.+|-.+++|..    .|.+++|
T Consensus       182 ~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iy  255 (703)
T KOG2321|consen  182 SINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIY  255 (703)
T ss_pred             eecCc--cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEE
Confidence            88654  368999999999999999887665443322      1     24899999999999999976    6679999


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001362          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  638 (1092)
                      |+++.+.+..-. |. ..-+|..+.|.+.+  +.+++. ....++|||-.+|+....+...   ..++.+|+-|++.+++
T Consensus       256 DLRa~~pl~~kd-h~-~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sGm~f  329 (703)
T KOG2321|consen  256 DLRASKPLLVKD-HG-YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSGMFF  329 (703)
T ss_pred             EcccCCceeecc-cC-CccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc---CCcCceeeecCCceEE
Confidence            999888764433 22 13678889997763  344443 4578999999999999888644   4589999999999999


Q ss_pred             EEeCCCeEEEEECCC
Q 001362          639 VIANENRIKILETPE  653 (1092)
Q Consensus       639 ~~~~dg~i~iw~~~~  653 (1092)
                      ++-.++.+..|-++.
T Consensus       330 ~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  330 TANESSKMHTYYIPS  344 (703)
T ss_pred             EecCCCcceeEEccc
Confidence            999988887776654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.53  E-value=5.9e-09  Score=126.82  Aligned_cols=569  Identities=11%  Similarity=0.129  Sum_probs=307.6

Q ss_pred             CCCCceEEeecCCCceEEEEEcCCCcEEEE----ecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001362          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLW----DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       333 h~~~V~~v~~spdg~~llasg~~d~~v~iw----d~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      ..+.|.++.|-++... +..+..+|.|.+.    +..+......                    ..-...|.+++||||+
T Consensus        74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~V--------------------G~vd~GI~a~~WSPD~  132 (928)
T PF04762_consen   74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIEIV--------------------GSVDSGILAASWSPDE  132 (928)
T ss_pred             CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeEEE--------------------EEEcCcEEEEEECCCc
Confidence            3468999999999974 6777788999999    5555543332                    2245789999999999


Q ss_pred             CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-----------
Q 001362          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-----------  477 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-----------  477 (1092)
                      ..||..+.++++.+-+-.- +.+.   +..-+..     .|-. +   ..++.|..+.=.-+.-..|+.           
T Consensus       133 Ella~vT~~~~l~~mt~~f-d~i~---E~~l~~~-----~~~~-~---~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  133 ELLALVTGEGNLLLMTRDF-DPIS---EVPLDSD-----DFGE-S---KHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             CEEEEEeCCCEEEEEeccc-eEEE---EeecCcc-----ccCC-C---ceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            9999999999887764321 1111   1111110     1100 1   123322211111111011111           


Q ss_pred             ---eEEEecCCcCeEEEeecccCCccEEEEEec---C---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001362          478 ---TYSFEGHGAPVYSLCPHAKENIHFIFSISV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       478 ---~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                         ...+. +...-..++|  .+||.++++.+.   .   ..+|||+-+ +..........+--.+++|.|.|+++++..
T Consensus       200 ~~d~~~~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q  275 (928)
T PF04762_consen  200 KVDEGKLS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQ  275 (928)
T ss_pred             ccccCccc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence               01122 3333445555  779999998875   3   469999754 332223333333345789999999999887


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeecc-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE--EEEeCCCCCCCC
Q 001362          549 TSKEGESFLVEWNESEGAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPEN  625 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v  625 (1092)
                      . ......|..|. ++|-.-..|.-.. .....|..+.|++++..|+..-.|. |.+|...+....  +.+..... ..+
T Consensus       276 ~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~  351 (928)
T PF04762_consen  276 R-LPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESV  351 (928)
T ss_pred             E-cCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCC
Confidence            5 23345677776 4555544444331 1236799999999999999877655 999998887643  33333322 234


Q ss_pred             ceEEEcc-CCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceee
Q 001362          626 PRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV  704 (1092)
Q Consensus       626 ~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~  704 (1092)
                      ..+.|+| +...|.+.+.+|.+..++..-.               +..++..                  +|+..-.+..
T Consensus       352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~---------------v~~s~~~------------------~~~D~g~vaV  398 (928)
T PF04762_consen  352 NFVKWDPEKPLRLHVLTSNGQYEIYDFAWD---------------VSRSPGS------------------SPNDNGTVAV  398 (928)
T ss_pred             CceEECCCCCCEEEEEecCCcEEEEEEEEE---------------EEecCCC------------------CccCceEEEE
Confidence            5699999 4556778887788776654311               0000000                  0111111111


Q ss_pred             ccccccceeccc---cccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCc
Q 001362          705 EAENKSEVEKPL---FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  781 (1092)
Q Consensus       705 ~~d~~i~lw~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~  781 (1092)
                      -...++++-.+.   .+.|.....+.     -...|..++|++++..+++...||.+.+|.++...............+ 
T Consensus       399 IDG~~lllTpf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~-  472 (928)
T PF04762_consen  399 IDGNKLLLTPFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSI-  472 (928)
T ss_pred             EeCCeEEEecccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhc-
Confidence            111123332221   11222222332     346799999999999899999999999999766432210000000000 


Q ss_pred             cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC----CeEEEEEcCCce---eeEEecCCCCCeEEEEEcCC
Q 001362          782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG----GVISLYIVMTFK---TILTIMPPSPTATSLAFNPH  854 (1092)
Q Consensus       782 ~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd----g~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~  854 (1092)
                        ..  .. ......  ......+..++|..+..+++....    ..+.+++....+   .........+.+..+...+ 
T Consensus       473 --~~--~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  544 (928)
T PF04762_consen  473 --SL--DS-MDISDS--ELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-  544 (928)
T ss_pred             --cc--cc-cccccc--ccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-
Confidence              00  00 000000  013456778888888877776653    458888874332   2333333445555565665 


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCcee-eEeeccccCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC
Q 001362          855 DNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG  931 (1092)
Q Consensus       855 d~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~  931 (1092)
                      +...++.-..+|.+...+...... +..+..-...+..+.+....  ..++.-+..|.+++   .+ .     .+.    
T Consensus       545 ~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la----  611 (928)
T PF04762_consen  545 DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA----  611 (928)
T ss_pred             CCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE---CC-E-----EEe----
Confidence            444466677899988776654322 22333222222222332222  14444455554443   11 1     111    


Q ss_pred             CcCCCCCceEEEEecCCCEEE-EEeCCcEEEEEcC-CceeeeeeccCC----CCCEEEEEEecCCCEEEEEECCCcEEEE
Q 001362          932 VMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAE-ELTCLKQWFPIS----SVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus       932 ~~~~~~~v~~l~~s~dg~~la-~~~d~~i~lwd~~-~~~~~~~~~~~h----~~~v~~l~fs~dg~~l~t~~~Dg~i~vw 1005 (1092)
                           ..++++++  .+.+|+ +.....+++.++. ....+......+    ...+..   -..|..|+++-....=.|-
T Consensus       612 -----~~~tSF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~---VERGsriVt~vp~~~~vVL  681 (928)
T PF04762_consen  612 -----SNCTSFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRR---VERGSRIVTAVPSDTSVVL  681 (928)
T ss_pred             -----cCCceEEE--EcCEEEEEecCceEEEEECcCchhhcccccCcccccccccccc---CccCCEEEEEeCCCceEEE
Confidence                 13566666  344444 4666778888887 111111111111    112222   2368888887765566677


Q ss_pred             EcCCCceE
Q 001362         1006 EASNLEVQ 1013 (1092)
Q Consensus      1006 d~~~~~~~ 1013 (1092)
                      .++.|.+.
T Consensus       682 QmPRGNLE  689 (928)
T PF04762_consen  682 QMPRGNLE  689 (928)
T ss_pred             EcCCCchh
Confidence            88888775

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.9e-11  Score=129.39  Aligned_cols=287  Identities=11%  Similarity=0.121  Sum_probs=188.1

Q ss_pred             CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ......++|++|+ ++|.+ .+..++|++..++..+.+                     -....+.++.|||-|.+|.+-
T Consensus        35 ~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T~   91 (566)
T KOG2315|consen   35 RPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLTW   91 (566)
T ss_pred             CcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeecccccccccc
Confidence            3477889999998 67765 457899999998864432                     122278899999999999873


Q ss_pred             -----eCC-----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001362          415 -----YSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       415 -----~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                           ..+     ..+.+|+++++....   .+......-++..|+.|..   ++.=-..+.+.+|+...-+.+. -.-|
T Consensus        92 e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl~  164 (566)
T KOG2315|consen   92 EPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKLS  164 (566)
T ss_pred             cccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eeee
Confidence                 122     347899999953322   1222222226899999987   3333345679999987743332 1236


Q ss_pred             CcCeEEEeecccCCccEEEE-----EecCCeEEEEEcCCCCceEEec---CCCCceEEEEEccCCCEEEEEe-cC--C--
Q 001362          485 GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCG-TS--K--  551 (1092)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~dg~~l~~~~-~~--~--  551 (1092)
                      ...|+.+.+++.+.-..+++     .+.-+.+++|.+..........   .....-..+.|++-|.-|++.. .+  .  
T Consensus       165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn  244 (566)
T KOG2315|consen  165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN  244 (566)
T ss_pred             ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence            77888888888765556654     3556679999776222211111   1111223567888776544322 21  1  


Q ss_pred             ---CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE--EeCCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001362          552 ---EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  626 (1092)
Q Consensus       552 ---~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  626 (1092)
                         -|+..+++.+.........+..    .++|.++.|+|+++.+++  |-.-..+.|||++ +..+..+..    ..-+
T Consensus       245 ~SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN  315 (566)
T KOG2315|consen  245 ASYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRN  315 (566)
T ss_pred             ccccccceEEEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCcc
Confidence               2456788888874344333332    489999999999987766  5577889999985 455555432    2347


Q ss_pred             eEEEccCCCEEEEEeCC---CeEEEEECCCCceeeec
Q 001362          627 RICFNKNGTLLAVIANE---NRIKILETPESNSVDAA  660 (1092)
Q Consensus       627 ~v~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~  660 (1092)
                      ++-|+|.|++++.++.+   |.|.+||+.+.+.+..+
T Consensus       316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~  352 (566)
T KOG2315|consen  316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF  352 (566)
T ss_pred             ceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence            89999999999988874   88999999886655444

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.52  E-value=9.2e-12  Score=129.94  Aligned_cols=282  Identities=13%  Similarity=0.107  Sum_probs=190.4

Q ss_pred             CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001362          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      .-++..++|||.|+ +|++... ..|.+|.-..+..+..+                     ....|..+.|||.++||.+
T Consensus        32 ~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~~---------------------~~~~V~~~~fSP~~kYL~t   88 (561)
T COG5354          32 NWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVRF---------------------RHPDVKYLDFSPNEKYLVT   88 (561)
T ss_pred             CcchhheeecCcch-heehhhc-cceEEccccchhheeee---------------------ecCCceecccCcccceeee
Confidence            44788999999998 5666544 56999998877644321                     2257999999999999999


Q ss_pred             EeCCC---------------EEEEEEccCCCcccceEEEcccccc--ee-EEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001362          414 AYSKH---------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       414 ~~~d~---------------~i~iwd~~~~~~~~~~~~~~~h~~~--v~-~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      -+..+               .+.+||..+|..+.   .+.+...+  .+ -+.|+-|.+  +++-- ....+.|+++ ++
T Consensus        89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t~  161 (561)
T COG5354          89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-TD  161 (561)
T ss_pred             eccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-CC
Confidence            75443               38999999997655   44444444  44 678999988  34333 2346999997 44


Q ss_pred             cee-EEEecC-CcCeEEEeecccCCccEEEE-----EecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001362          476 SRT-YSFEGH-GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       476 ~~~-~~~~~~-~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      ... ..+... ...|....++|..++..|+.     ...++++++|.+.....+.........-..+.|.+.|++|++-.
T Consensus       162 n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~  241 (561)
T COG5354         162 NIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLV  241 (561)
T ss_pred             ccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEE
Confidence            322 122111 24567777877766666554     45678899999886665554443333344678889998876433


Q ss_pred             cC-------CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE--eCCCcEEEEECCCCceEEEEeCC
Q 001362          549 TS-------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       549 ~~-------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~  619 (1092)
                      ..       .-++..++++++....+. ......   ++|...+|.|.++.+++.  -.+..+.++|++.. ....+...
T Consensus       242 ~t~~ksnKsyfgesnLyl~~~~e~~i~-V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~  316 (561)
T COG5354         242 MTHTKSNKSYFGESNLYLLRITERSIP-VEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ  316 (561)
T ss_pred             EEeeecccceeccceEEEEeecccccc-eecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc
Confidence            21       123456888887743332 222333   899999999999887664  47888999998766 44443322


Q ss_pred             CCCCCCceEEEccCCCEEEEEeCC---CeEEEEECCCC
Q 001362          620 GGLPENPRICFNKNGTLLAVIANE---NRIKILETPES  654 (1092)
Q Consensus       620 ~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iw~~~~~  654 (1092)
                          .-+.+.|+|.++++++++-|   |.+.+|+....
T Consensus       317 ----~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         317 ----KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             ----ccccccccCcccEEEEecCCccccceEEeccCCc
Confidence                23678999999999998765   67888876643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.6e-12  Score=148.25  Aligned_cols=234  Identities=15%  Similarity=0.143  Sum_probs=152.9

Q ss_pred             ccCCCcceeeecccCCCCceEEeecCCCceEEEEEcC--CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC
Q 001362          319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG  396 (1092)
Q Consensus       319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~--d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~  396 (1092)
                      +.+......+.+..|...+.+.+|||||++++.+...  +..|.+||+.+++...                    +..+.
T Consensus       188 i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~  247 (433)
T PRK04922        188 VADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFR  247 (433)
T ss_pred             EECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCC
Confidence            3444445556677777789999999999964444322  3469999998887543                    22334


Q ss_pred             CcEEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-CCCc--EEEE
Q 001362          397 VSVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKVW  470 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d~~--i~vw  470 (1092)
                      +...+++|||||+.|+.. +.++  .|++||+.+++..    .+..+.......+|+|||++  ++..+ .++.  |.++
T Consensus       248 g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~  321 (433)
T PRK04922        248 GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRV  321 (433)
T ss_pred             CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEE
Confidence            455678999999988754 4444  6999999987632    34455555678899999994  44444 4444  6777


Q ss_pred             ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001362          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      |+.+++... +..+.......+|+  +||+.|+..+.++   .|.+||+.++... .+. +........|+|||++++..
T Consensus       322 dl~~g~~~~-lt~~g~~~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~  396 (433)
T PRK04922        322 AASGGSAER-LTFQGNYNARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYA  396 (433)
T ss_pred             ECCCCCeEE-eecCCCCccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEE
Confidence            877776433 32233334456674  5777887765443   5899998776654 332 22234567899999999887


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001362          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p  588 (1092)
                      +.. .+...|++++...+ ....+..+.   +.+...+|+|
T Consensus       397 s~~-~g~~~L~~~~~~g~-~~~~l~~~~---g~~~~p~wsp  432 (433)
T PRK04922        397 TRE-GGRGVLAAVSTDGR-VRQRLVSAD---GEVREPAWSP  432 (433)
T ss_pred             Eec-CCceEEEEEECCCC-ceEEcccCC---CCCCCCccCC
Confidence            654 34667999998543 444444333   4556666765

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=3e-12  Score=145.99  Aligned_cols=238  Identities=16%  Similarity=0.120  Sum_probs=157.5

Q ss_pred             CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC---CCEEEEEEccCCCcccc
Q 001362          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ  433 (1092)
Q Consensus       357 ~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~  433 (1092)
                      ..|.+||...+....                    +..|...+.+.+|||||+.|+..+.   +..|.+||+.+++..  
T Consensus       184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--  241 (433)
T PRK04922        184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--  241 (433)
T ss_pred             EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence            468899986554332                    4557788999999999999998864   347999999887542  


Q ss_pred             eEEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEec-CCe
Q 001362          434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK  510 (1092)
Q Consensus       434 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~  510 (1092)
                        .+..+.+...+.+|+|||+. ++++.+.++  .|++||+.+++.. .+..+.......+|+  +||+.|+..+. +|.
T Consensus       242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~  315 (433)
T PRK04922        242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWA--PDGKSIYFTSDRGGR  315 (433)
T ss_pred             --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEEC--CCCCEEEEEECCCCC
Confidence              23344455668899999995 334555555  5999999888753 455555555667774  46777776653 455


Q ss_pred             --EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001362          511 --IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       511 --i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p  588 (1092)
                        |.++++.+++... +..........+|+|||++++..... .+...|++||+.+++.. .+.. .   .......|+|
T Consensus       316 ~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~-~Lt~-~---~~~~~p~~sp  388 (433)
T PRK04922        316 PQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVR-TLTP-G---SLDESPSFAP  388 (433)
T ss_pred             ceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeE-ECCC-C---CCCCCceECC
Confidence              5555665544322 22233344568999999999887542 23457999999888765 3322 1   2334568999


Q ss_pred             CCCEEEEEeCC---CcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001362          589 AKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       589 ~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      +|++++..+.+   +.+.+++... .....+..+.  ..+...+|+|
T Consensus       389 dG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp  432 (433)
T PRK04922        389 NGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP  432 (433)
T ss_pred             CCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence            99998876643   4577888854 4444444322  2356667765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.50  E-value=3.4e-10  Score=124.75  Aligned_cols=210  Identities=14%  Similarity=0.202  Sum_probs=137.2

Q ss_pred             CeeEEEEecCCCEEEEEe--CCeEEEEEcCC-ceeeEE---e----------cCCCCCeEEEEEcCCCCCEEEEEeC-CC
Q 001362          804 AVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---I----------MPPSPTATSLAFNPHDNNVIAIGMD-DS  866 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~s~~d~~~lasg~~-dg  866 (1092)
                      ....++++|++++|+++.  +|.+.++++.. +.....   +          +.......++.|+| +++++++... ..
T Consensus        88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D  166 (345)
T PF10282_consen   88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD  166 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred             CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence            345678888888888886  58888888875 333222   1          11234678999999 8887777543 34


Q ss_pred             cEEEEEcCCce--ee--Eeec-cccCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcC--CCceeeeeeeecCCCCcCCCCC
Q 001362          867 TILIYNARSSE--VI--SKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPS  938 (1092)
Q Consensus       867 ~v~iwd~~~~~--~~--~~l~-~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~  938 (1092)
                      .|.+|++....  ..  ..+. ........++|+||++++.... .+++|.++++.  .+.......+............
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  246 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA  246 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence            89999997654  21  2222 2445678999999999886554 57889999998  5544444444443222211125


Q ss_pred             ceEEEEecCCCEEEEE--eCCcEEEEEcC--Ccee--eeeeccCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEEc--CC
Q 001362          939 ETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SN 1009 (1092)
Q Consensus       939 v~~l~~s~dg~~la~~--~d~~i~lwd~~--~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~Dg~i~vwd~--~~ 1009 (1092)
                      ...++++|||++|.++  ..+.|.+|++.  +++.  +.. ..........++|+|||++|+++. .++.|.+|++  .+
T Consensus       247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~-~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t  325 (345)
T PF10282_consen  247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT-VPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT  325 (345)
T ss_dssp             EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE-EEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE-EeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence            7899999999999986  45689999993  3332  222 222244588999999999999887 5578999976  46


Q ss_pred             CceEEe
Q 001362         1010 LEVQCR 1015 (1092)
Q Consensus      1010 ~~~~~~ 1015 (1092)
                      |.+...
T Consensus       326 G~l~~~  331 (345)
T PF10282_consen  326 GKLTPV  331 (345)
T ss_dssp             TEEEEE
T ss_pred             CcEEEe
Confidence            665533

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=3.5e-12  Score=144.84  Aligned_cols=223  Identities=14%  Similarity=0.100  Sum_probs=145.8

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  468 (1092)
                      +..+...+.+.+|||||+.|+..+.+   ..|.+||+.+++...    +....+.+.+.+|+|||+. ++++.+.++...
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~  265 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ  265 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence            44577889999999999999987643   469999999886432    3334455678999999995 344667787766


Q ss_pred             EEE--CCCCceeEEEecCCcCeEEEeecccCCccEEEEEec-CCeEEEEEcC--CCCceEEecCCCCceEEEEEccCCCE
Q 001362          469 VWD--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVDYDAPGLGCTRMAYSANGRR  543 (1092)
Q Consensus       469 vwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~--~~~~~~~~~~~~~~i~~~~~s~dg~~  543 (1092)
                      ||.  ..++. +..+..+........|+  +||+.|+..+. +|...+|.++  .+.. ..+...........|+|||++
T Consensus       266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~  341 (427)
T PRK02889        266 IYTVNADGSG-LRRLTQSSGIDTEPFFS--PDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKL  341 (427)
T ss_pred             EEEEECCCCC-cEECCCCCCCCcCeEEc--CCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCE
Confidence            665  44444 45555555555666774  57777776554 5677777654  3322 222222333446789999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceEEEEeCCC
Q 001362          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~  620 (1092)
                      ++..+..+ +...|++||..+++......+     .......|+|+++.|+.++.++   .+.+.+. ++.....+..+.
T Consensus       342 Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~  414 (427)
T PRK02889        342 LAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG  414 (427)
T ss_pred             EEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence            98776432 245799999988876443322     2235678999999998876444   3555566 455555554332


Q ss_pred             CCCCCceEEEcc
Q 001362          621 GLPENPRICFNK  632 (1092)
Q Consensus       621 ~~~~v~~v~~s~  632 (1092)
                        ..+...+|+|
T Consensus       415 --g~~~~p~wsp  424 (427)
T PRK02889        415 --GDVREPSWGP  424 (427)
T ss_pred             --CCCCCCccCC
Confidence              2356677776

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=2.8e-12  Score=145.56  Aligned_cols=235  Identities=20%  Similarity=0.197  Sum_probs=150.3

Q ss_pred             cCCCcceeeecccCCCCceEEeecCCCceEEEEEcCC--CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC
Q 001362          320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1092)
Q Consensus       320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d--~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~  397 (1092)
                      .+......+.+..+.+.+.+.+|||||++++.+...+  ..|.+||+.+|+...                    +....+
T Consensus       181 ~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g  240 (427)
T PRK02889        181 SDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKG  240 (427)
T ss_pred             ECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCC
Confidence            3334444556667777999999999998644443222  459999999887543                    222335


Q ss_pred             cEEEEEECCCCCEEEE-EeCCCEEEEEEc--cCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE--C
Q 001362          398 SVNRVVWSPDGSLLGV-AYSKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD--A  472 (1092)
Q Consensus       398 ~V~~l~~spdg~~las-~~~d~~i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd--~  472 (1092)
                      .+.+.+|||||+.|+. .+.++...||.+  .++. .+   .+..+.+.+....|+|||+.+ ++++..++...||.  .
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~l-~f~s~~~g~~~Iy~~~~  315 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRSI-YFTSDRGGAPQIYRMPA  315 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCEE-EEEecCCCCcEEEEEEC
Confidence            5678999999999875 566776666654  4443 22   345566666788999999952 33333456666665  4


Q ss_pred             CCCceeEEEecCCcCeEEEeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001362          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      .+++. ..+..+........|  ++||++|+..+.++   .|.+||+.++.......  ........|+|||+.|+..+.
T Consensus       316 ~~g~~-~~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~  390 (427)
T PRK02889        316 SGGAA-QRVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQ  390 (427)
T ss_pred             CCCce-EEEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEe
Confidence            45543 222222223334556  45778888776654   59999998776543322  223467899999999998876


Q ss_pred             CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001362          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA  589 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~  589 (1092)
                      .+ +...+++.+. +|.....+..+.   +.+...+|+|-
T Consensus       391 ~~-g~~~l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp~  425 (427)
T PRK02889        391 QG-GRSVLAAVSS-DGRIKQRLSVQG---GDVREPSWGPF  425 (427)
T ss_pred             cC-CCEEEEEEEC-CCCceEEeecCC---CCCCCCccCCC
Confidence            43 3566777777 455555555444   55666677763

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.49  E-value=3.5e-12  Score=128.78  Aligned_cols=272  Identities=13%  Similarity=0.125  Sum_probs=194.6

Q ss_pred             CCCceEEeecCCCceEEEEE-cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001362          334 SSSPMSMDFHPVQHTLLLVG-TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg-~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      .+.|+.++|--|++.=+..+ +.|-.+.....+.......    +||+..         ......+|..++..  ...|+
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~--dg~Li  119 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA--DGTLI  119 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc--CCEEE
Confidence            45788888877765433333 3566677777666554432    233221         33345666666665  33677


Q ss_pred             EEeCCCEEEEEEccCCCccc-ceEEEcccccceeEEEEecCCCcEEEEEEeCC--CcEEEEECCCCceeEEEecC-----
Q 001362          413 VAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGH-----  484 (1092)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d--~~i~vwd~~~~~~~~~~~~~-----  484 (1092)
                      +|-.+|.+.+|..+.+..-. ....+..+ ..+..+.-++...+ ++++||..  ..+.|||+++.+.+.+-+.-     
T Consensus       120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L  197 (412)
T KOG3881|consen  120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL  197 (412)
T ss_pred             EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence            77889999999998553111 11123333 35667777777665 67779988  88999999988665443321     


Q ss_pred             ----CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001362          485 ----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       485 ----~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                          .-+++++.|.+..+...|++++.-+.+++||.+.++. +..+.....+++++...|+|++++++..    .+.+..
T Consensus       198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~  273 (412)
T KOG3881|consen  198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK  273 (412)
T ss_pred             cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence                1245566776654578999999999999999997664 5578888889999999999999999865    556999


Q ss_pred             EeCCCCeEEEE-EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001362          560 WNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       560 wd~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      +|.+++..... +.+..   +.+.++..+|..+++++++-|..+||+|+.+.+++...-...   ..+++.+.+
T Consensus       274 FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~  341 (412)
T KOG3881|consen  274 FDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD  341 (412)
T ss_pred             ecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence            99999998877 77777   899999999999999999999999999999977765554332   245555544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.48  E-value=1.2e-10  Score=121.89  Aligned_cols=358  Identities=12%  Similarity=0.152  Sum_probs=227.1

Q ss_pred             EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001362          512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD  591 (1092)
Q Consensus       512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  591 (1092)
                      .+|...+......+....-++..+++||.|.+|++....     .|.+|+...+..+..+..     ..|..+.|+|.++
T Consensus        15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-----~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~k   84 (561)
T COG5354          15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-----GVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEK   84 (561)
T ss_pred             EeecCccccccccccccCcchhheeecCcchheehhhcc-----ceEEccccchhheeeeec-----CCceecccCcccc
Confidence            345444444444444456688899999999999987642     399999887776555554     4699999999999


Q ss_pred             EEEEEeCCC---------------cEEEEECCCCceEEEEeCCCCCCCCc-eEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001362          592 QILAAGDDH---------------VIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       592 ~l~~~s~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      +|.+-+..+               .+.+||..+|..+..+.......... -+.|+.+.+++|-. ....+.|+++ ++.
T Consensus        85 YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n  162 (561)
T COG5354          85 YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDN  162 (561)
T ss_pred             eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCc
Confidence            999865333               49999999999999887654432233 68899888877755 3357888886 221


Q ss_pred             eee-eccc-ccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccc
Q 001362          656 SVD-AAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK  733 (1092)
Q Consensus       656 ~~~-~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~  733 (1092)
                      ... .+.. ....                                                                   
T Consensus       163 ~~~~p~~~lr~~g-------------------------------------------------------------------  175 (561)
T COG5354         163 IEEHPFKNLRPVG-------------------------------------------------------------------  175 (561)
T ss_pred             cccCchhhccccc-------------------------------------------------------------------
Confidence            110 0000 0122                                                                   


Q ss_pred             cccEEEEEEecCCc--EEEE-----eecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001362          734 ANKISRLTYNNGGQ--AIFA-----LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  806 (1092)
Q Consensus       734 ~~~i~~l~~s~~g~--~l~~-----~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~  806 (1092)
                         |....++|.|.  .|+.     .+..+++++|.++.++.                      +.+..+    ....-.
T Consensus       176 ---i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~----------------------l~tk~l----fk~~~~  226 (561)
T COG5354         176 ---ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV----------------------LVTKNL----FKVSGV  226 (561)
T ss_pred             ---eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe----------------------eeeeee----Eeeccc
Confidence               22333333211  1111     12345666666553321                      111111    011112


Q ss_pred             EEEEecCCCEEEEEe------------CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEE--EeCCCcEEEEE
Q 001362          807 CFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI--GMDDSTILIYN  872 (1092)
Q Consensus       807 ~~~~s~dg~~l~~~s------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las--g~~dg~v~iwd  872 (1092)
                      .+-|.+.|+++++--            ...+.|+++..... .....-.++|...+|.| .++.+++  |..+-.+-++|
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~  304 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFD  304 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecc-cCCceeEEecccccceeecc
Confidence            345566666554321            24588888874333 33335678999999999 5555444  35778999999


Q ss_pred             cCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC
Q 001362          873 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1092)
Q Consensus       873 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  949 (1092)
                      ++.. ++..+.  ..+=..+.|||.+++++.++-|   |.|-+||..+.-    .++....+.     ..+.+.|||||.
T Consensus       305 lr~N-l~~~~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~-----n~s~~~wspd~q  372 (561)
T COG5354         305 LRGN-LRFYFP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGL-----NTSYCDWSPDGQ  372 (561)
T ss_pred             cccc-eEEecC--CcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecC-----CceEeeccCCce
Confidence            9854 444333  3444568999999999998876   569999998743    233233332     356788999999


Q ss_pred             EEEEE-------eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCC
Q 001362          950 RFLLV-------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus       950 ~la~~-------~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg 1000 (1092)
                      ++.+.       .|..+.|||+......         ..+.+.|.|.|++..+.+.+.
T Consensus       373 F~~~~~ts~k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         373 FYDTDTTSEKLRVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             EEEecCCCcccccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence            99873       3678999998644332         356678899899888887765

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.48  E-value=2.7e-12  Score=134.33  Aligned_cols=252  Identities=10%  Similarity=0.133  Sum_probs=167.1

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE-----CCCCCE
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-----SPDGSL  410 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~-----spdg~~  410 (1092)
                      .+....++-.|++|..--+  ..+.+|+...+..+.             .++.+..+.+  ....|-+|     .|+|--
T Consensus       125 ~~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~-------------~pi~k~~y~g--t~P~cHdfn~~~a~~~g~d  187 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVG--RELYVYSYRGAADLS-------------KPIDKREYKG--TSPTCHDFNSFTATPKGLD  187 (636)
T ss_pred             ceeeccccCCCCEEEEecC--CeEEEEEccCcchhc-------------cchhhhcccC--CCCceecccccccCCCCcc
Confidence            4555666667776554333  568888887644332             1122222222  23344444     456778


Q ss_pred             EEEEeCCCEEEEEEccCCCcccceEEEc--ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe
Q 001362          411 LGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  488 (1092)
                      |+.|-..|.|++.|....+..+ +....  -....|+|+.|-|.+.. .++.+-.+|.++++|.+          +....
T Consensus       188 llIGf~tGqvq~idp~~~~~sk-lfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~~  255 (636)
T KOG2394|consen  188 LLIGFTTGQVQLIDPINFEVSK-LFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCGA  255 (636)
T ss_pred             eEEeeccCceEEecchhhHHHH-hhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------ccccC
Confidence            8889888999999887632222 11111  12368999999998877 56667779999999851          11122


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001362          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1092)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1092)
                      +.-++..-+++..+.....-+.      .+..++..+......|...+|+|||++|++.+.    ++.++|+|..+.+++
T Consensus       256 t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLl  325 (636)
T KOG2394|consen  256 TAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELL  325 (636)
T ss_pred             CCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHH
Confidence            2222222233333332211110      111333344444558899999999999999986    788999999999988


Q ss_pred             EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001362          569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                      ..++..-   +...|++|+|||++|++|++|.-|.||.+..++.+..-.  ++.+.|..|+|.
T Consensus       326 g~mkSYF---GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHkSWVs~VaFD  383 (636)
T KOG2394|consen  326 GVMKSYF---GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHKSWVSVVAFD  383 (636)
T ss_pred             HHHHhhc---cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc--ccccceeeEeec
Confidence            8877766   789999999999999999999999999999988887755  446688999988

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=8.2e-12  Score=142.69  Aligned_cols=233  Identities=15%  Similarity=0.100  Sum_probs=153.9

Q ss_pred             cCCCcceeeecccCCCCceEEeecCCCceEEEEEc--CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC
Q 001362          320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1092)
Q Consensus       320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~--~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~  397 (1092)
                      .+......+.+..|...+.+.+|||||++++.+..  .+..|.+||+.+|+...                    +..+.+
T Consensus       187 ~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g  246 (435)
T PRK05137        187 MDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPG  246 (435)
T ss_pred             ECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCC
Confidence            34445555677788889999999999996544432  24689999999887543                    344566


Q ss_pred             cEEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-CC--CcEEEEE
Q 001362          398 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DD--KTIKVWD  471 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d--~~i~vwd  471 (1092)
                      .+.+.+|||||+.|+.. +.++  .|.+||+.+++..    .+..+........|+|||++  ++..+ .+  ..|++||
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d  320 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMN  320 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEE
Confidence            77889999999988754 4444  4788898887532    35556666778999999995  44443 33  3688889


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      +.+++. +.+..+...+....|+  +||+.|+..+.+   ..|.+||+...... .+. ....+..+.|+|||+.|+..+
T Consensus       321 ~~g~~~-~~lt~~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~  395 (435)
T PRK05137        321 ADGSNP-RRISFGGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFR  395 (435)
T ss_pred             CCCCCe-EEeecCCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEE
Confidence            776654 3444344555666674  577788776543   35778887554432 222 223467789999999998776


Q ss_pred             cCCCCc--eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001362          549 TSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       549 ~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p  588 (1092)
                      ......  ..++++|+..+.. ..+.. .   +.+...+|+|
T Consensus       396 ~~~~~~~~~~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp  432 (435)
T PRK05137        396 QTPGSGGAPKLYTVDLTGRNE-REVPT-P---GDASDPAWSP  432 (435)
T ss_pred             ccCCCCCcceEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence            533221  4688889876654 33332 2   3355556665

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=1.1e-10  Score=123.76  Aligned_cols=336  Identities=14%  Similarity=0.151  Sum_probs=209.6

Q ss_pred             CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-----eC-----
Q 001362          529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-----GD-----  598 (1092)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-----s~-----  598 (1092)
                      ..++...+++++|++++.+.     +..+.|++..++..+.+...     ..+..+.|+|.+.++.+-     ..     
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~-----~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~  103 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL-----KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS  103 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc-----ceeeeeeecccccccccccccccccCCCCC
Confidence            34577889999999999886     44588999888864333332     358899999999988762     12     


Q ss_pred             CCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcc
Q 001362          599 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  678 (1092)
Q Consensus       599 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  678 (1092)
                      .-.+.+|+++++.....+......  -.+..|++|..+.+- -..+.+.+|+..+-+.. ...-+...+..+.++|.+..
T Consensus       104 ~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~  179 (566)
T KOG2315|consen  104 NPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEP  179 (566)
T ss_pred             CCceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCccce-eeeeeccceeeEEecCCCCC
Confidence            234779999996655555433222  257888887764433 33478999998873222 23345667777777765322


Q ss_pred             ccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCee
Q 001362          679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH  758 (1092)
Q Consensus       679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i  758 (1092)
                      .       .+++        ...-..+.-..+|+|...........  ....- -...=..+.|++-|.-|+.....   
T Consensus       180 ~-------~vAv--------yvPe~kGaPa~vri~~~~~~~~~~~~--a~ksF-Fkadkvqm~WN~~gt~LLvLast---  238 (566)
T KOG2315|consen  180 P-------FVAV--------YVPEKKGAPASVRIYKYPEEGQHQPV--ANKSF-FKADKVQMKWNKLGTALLVLAST---  238 (566)
T ss_pred             c-------eEEE--------EccCCCCCCcEEEEeccccccccchh--hhccc-cccceeEEEeccCCceEEEEEEE---
Confidence            1       1111        00112344467888886522111110  00000 11122345677766655433221   


Q ss_pred             EEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC---CeEEEEEcCCcee
Q 001362          759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKT  835 (1092)
Q Consensus       759 ~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd---g~i~iwd~~~~~~  835 (1092)
                         +++....+.-    ...++.+.+.. |. -....+.   ..++|.++.|+|+|+-++++.+   .++.|||+. +..
T Consensus       239 ---dVDktn~SYY----GEq~Lyll~t~-g~-s~~V~L~---k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~  305 (566)
T KOG2315|consen  239 ---DVDKTNASYY----GEQTLYLLATQ-GE-SVSVPLL---KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKP  305 (566)
T ss_pred             ---eecCCCcccc----ccceEEEEEec-Cc-eEEEecC---CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCE
Confidence               0111100011    11223333333 22 1222232   5789999999999998888763   779999986 555


Q ss_pred             eEEecCCCCCeEEEEEcCCCCCEEEEEeCC---CcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeC------
Q 001362          836 ILTIMPPSPTATSLAFNPHDNNVIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG------  906 (1092)
Q Consensus       836 ~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~------  906 (1092)
                      +..+  ..++=.++-|+| .|++|+.++-+   |.+.|||+.+.+++..+..-..  +-..|+|||.+++|++.      
T Consensus       306 v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrv  380 (566)
T KOG2315|consen  306 VFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRV  380 (566)
T ss_pred             eEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEe
Confidence            5554  456678899999 78888887765   7999999999999988885443  45899999999999875      


Q ss_pred             CCcEEEEEcCC
Q 001362          907 DAQIFVWDVDG  917 (1092)
Q Consensus       907 Dg~i~iwd~~~  917 (1092)
                      |..++||+..+
T Consensus       381 dNg~KiwhytG  391 (566)
T KOG2315|consen  381 DNGIKIWHYTG  391 (566)
T ss_pred             cCCeEEEEecC
Confidence            67799999987

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.43  E-value=9.6e-10  Score=111.31  Aligned_cols=281  Identities=11%  Similarity=0.098  Sum_probs=185.5

Q ss_pred             ccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC---CeeEEEeecCCCcCcCcccccccCCccc
Q 001362          707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLY  783 (1092)
Q Consensus       707 d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~w  783 (1092)
                      +..|.+|+++.........   .........+-++++|+++.|.++..+   |.+.-|.++.                  
T Consensus        15 s~gI~v~~ld~~~g~l~~~---~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~------------------   73 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLL---QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP------------------   73 (346)
T ss_pred             CCceEEEEEeCcccccchh---hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC------------------
Confidence            4668888887433221111   112355677889999999999888665   6666666543                  


Q ss_pred             cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCC-ceeeEE--ecCCCCC----------eEE
Q 001362          784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATS  848 (1092)
Q Consensus       784 ~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~  848 (1092)
                        .+|.-........  ...+...++++++|++|+++.  .|.|.++-+.. |.....  ...|.+.          +..
T Consensus        74 --~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~  149 (346)
T COG2706          74 --DDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS  149 (346)
T ss_pred             --CCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence              3333222221111  233347899999999999997  58999999865 433221  1223333          788


Q ss_pred             EEEcCCCCCEEEEEeCC-CcEEEEEcCCceeeEeec---cccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC--Ccee
Q 001362          849 LAFNPHDNNVIAIGMDD-STILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQ  921 (1092)
Q Consensus       849 l~~s~~d~~~lasg~~d-g~v~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iwd~~~--~~~~  921 (1092)
                      ..+.| ++++|++.+-. -.|.+|++..|+....-.   .-...-+.|+|+|++++.....+ +++|.+|..+.  ++..
T Consensus       150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~  228 (346)
T COG2706         150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE  228 (346)
T ss_pred             eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence            89999 89888876532 279999999876432211   23445688999999999876665 89999999987  4544


Q ss_pred             eeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeC--CcEEEEEcCC--ceee-eeeccCCCCCEEEEEEecCCCEEEEE
Q 001362          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--THLAIYEAEE--LTCL-KQWFPISSVPISQATFSCDCRMVFTS  996 (1092)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d--~~i~lwd~~~--~~~~-~~~~~~h~~~v~~l~fs~dg~~l~t~  996 (1092)
                      ..+.+.++.....-..+...+.+++||++|.++..  +.|.+|.+..  ++.. ......+........|+++|++|+++
T Consensus       229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa  308 (346)
T COG2706         229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA  308 (346)
T ss_pred             EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence            44455444444333346788999999999999744  4688887753  3321 12233345557889999999999998


Q ss_pred             ECC-CcEEEEEcC--CCceE
Q 001362          997 FVD-GTLSIHEAS--NLEVQ 1013 (1092)
Q Consensus       997 ~~D-g~i~vwd~~--~~~~~ 1013 (1092)
                      ..+ ..|.+|..+  +|++-
T Consensus       309 ~q~sd~i~vf~~d~~TG~L~  328 (346)
T COG2706         309 NQKSDNITVFERDKETGRLT  328 (346)
T ss_pred             ccCCCcEEEEEEcCCCceEE
Confidence            865 458888665  45543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=3.1e-11  Score=127.54  Aligned_cols=284  Identities=15%  Similarity=0.183  Sum_probs=191.1

Q ss_pred             ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC-cCeEEEeecccCCccEEEEEecCCeEEEEEcC
Q 001362          439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYD  517 (1092)
Q Consensus       439 ~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  517 (1092)
                      +|...-+.|..+|||++ ++++|...-.|++||+..-.+.  |..|. ..+..+.+. +.|-..++.-..|.+|.+..- 
T Consensus        49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak-  123 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAK-  123 (703)
T ss_pred             CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEe-ccchhhheEeecCceeeehhh-
Confidence            46677889999999997 7889999999999998765543  32332 223222221 222233444455555554311 


Q ss_pred             CCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe
Q 001362          518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG  597 (1092)
Q Consensus       518 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s  597 (1092)
                       ......... ......++++.-..-|++++...    .|+-+++..|..+..+....   +.++++..++....|++|+
T Consensus       124 -~G~hy~~RI-P~~GRDm~y~~~scDly~~gsg~----evYRlNLEqGrfL~P~~~~~---~~lN~v~in~~hgLla~Gt  194 (703)
T KOG2321|consen  124 -YGRHYRTRI-PKFGRDMKYHKPSCDLYLVGSGS----EVYRLNLEQGRFLNPFETDS---GELNVVSINEEHGLLACGT  194 (703)
T ss_pred             -cCeeeeeec-CcCCccccccCCCccEEEeecCc----ceEEEEcccccccccccccc---ccceeeeecCccceEEecc
Confidence             111111111 11223455554443444444322    39999999999999988876   8899999999999999999


Q ss_pred             CCCcEEEEECCCCceEEEEeCCC---------CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc-cccCce
Q 001362          598 DDHVIKIWDMNKVQLLTTIDAGG---------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNL  667 (1092)
Q Consensus       598 ~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v  667 (1092)
                      .+|.|..||.++...+.++....         ..+.|+++.|+.+|-.+++|+.+|.+.|||+...+++.... +..-+|
T Consensus       195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi  274 (703)
T KOG2321|consen  195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI  274 (703)
T ss_pred             cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence            99999999999988777765432         23458999999999999999999999999999887665433 344556


Q ss_pred             eeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCc
Q 001362          668 RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ  747 (1092)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~  747 (1092)
                      ..+.|.+.                    -+++.+++ .....++|||-..+.+.....       ....++.+++-|++-
T Consensus       275 ~~l~~~~~--------------------~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiE-------pt~~lND~C~~p~sG  326 (703)
T KOG2321|consen  275 KKLDWQDT--------------------DQQNKVVS-MDKRILKIWDECTGKPMASIE-------PTSDLNDFCFVPGSG  326 (703)
T ss_pred             eeeccccc--------------------CCCceEEe-cchHHhhhcccccCCceeecc-------ccCCcCceeeecCCc
Confidence            66666532                    11233333 344779999987665543322       345588899999999


Q ss_pred             EEEEeecCCeeEEEeec
Q 001362          748 AIFALASNGVHLMWRWP  764 (1092)
Q Consensus       748 ~l~~~~~dg~i~lw~~~  764 (1092)
                      .++++-.++.+..|=++
T Consensus       327 m~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  327 MFFTANESSKMHTYYIP  343 (703)
T ss_pred             eEEEecCCCcceeEEcc
Confidence            89888888776666554

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.6e-10  Score=121.63  Aligned_cols=326  Identities=13%  Similarity=0.173  Sum_probs=199.9

Q ss_pred             eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-----------CCC
Q 001362          532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DDH  600 (1092)
Q Consensus       532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-----------~dg  600 (1092)
                      -+-+.|||.|.||++-...|     |.+|--.+-..++.|..     ..|.-+.|||+.++|++-+           +..
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~  282 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ  282 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence            45689999999999987533     89998776666666653     4688999999999999854           225


Q ss_pred             cEEEEECCCCceEEEEeCCCC-CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccc
Q 001362          601 VIKIWDMNKVQLLTTIDAGGG-LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT  679 (1092)
Q Consensus       601 ~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  679 (1092)
                      .++|||+.+|.....+..... ...-.-..||.|++++|.... .+|.||+...-.++....                  
T Consensus       283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks------------------  343 (698)
T KOG2314|consen  283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS------------------  343 (698)
T ss_pred             eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc------------------
Confidence            799999999999988876322 223346789999999998877 478888766422111100                  


Q ss_pred             cccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeE
Q 001362          680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL  759 (1092)
Q Consensus       680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~  759 (1092)
                                           +                               ....|..+.|+|.+..|+.-...    
T Consensus       344 ---------------------l-------------------------------ki~gIr~FswsP~~~llAYwtpe----  367 (698)
T KOG2314|consen  344 ---------------------L-------------------------------KISGIRDFSWSPTSNLLAYWTPE----  367 (698)
T ss_pred             ---------------------c-------------------------------CCccccCcccCCCcceEEEEccc----
Confidence                                 0                               22335555666665433222111    


Q ss_pred             EEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEe
Q 001362          760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI  839 (1092)
Q Consensus       760 lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~  839 (1092)
                                                 +..           ..                    ..+.+..+.+++.+++.
T Consensus       368 ---------------------------~~~-----------~p--------------------arvtL~evPs~~~iRt~  389 (698)
T KOG2314|consen  368 ---------------------------TNN-----------IP--------------------ARVTLMEVPSKREIRTK  389 (698)
T ss_pred             ---------------------------ccC-----------Cc--------------------ceEEEEecCccceeeec
Confidence                                       100           00                    11223333333333332


Q ss_pred             cCCCCCeEEEEEcCCCCCEEEEE----------eCCCcEEEEEcCCcee-eEeeccccCCeEEEEEcCCCCEEEEEeC--
Q 001362          840 MPPSPTATSLAFNPHDNNVIAIG----------MDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGG--  906 (1092)
Q Consensus       840 ~~~~~~i~~l~~s~~d~~~lasg----------~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~l~s~s~--  906 (1092)
                      .-+.-.=..+-|-. .|.+|+.-          +.=..+.|+.+..... +..+ .-...|...+|-|.|..+++.+.  
T Consensus       390 nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~  467 (698)
T KOG2314|consen  390 NLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNT  467 (698)
T ss_pred             cceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccc
Confidence            22221112233333 44444431          1122466666665432 2222 25577889999999998887654  


Q ss_pred             -CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE----eCCcEEEEEcCCceeeeeeccCCCCCE
Q 001362          907 -DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPISSVPI  981 (1092)
Q Consensus       907 -Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~----~d~~i~lwd~~~~~~~~~~~~~h~~~v  981 (1092)
                       ..++.+|.+++.. .....+..++..     ....+.|||.|++++++    ..|.+..||..-..+...-...| ...
T Consensus       468 ~k~tvsfY~~e~~~-~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~a  540 (698)
T KOG2314|consen  468 VKNTVSFYAVETNI-KKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAA  540 (698)
T ss_pred             cccceeEEEeecCC-Cchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-ccc
Confidence             3568999988522 222344444432     36789999999999873    46789999988544443323334 345


Q ss_pred             EEEEEecCCCEEEEEECC------CcEEEEEcCC
Q 001362          982 SQATFSCDCRMVFTSFVD------GTLSIHEASN 1009 (1092)
Q Consensus       982 ~~l~fs~dg~~l~t~~~D------g~i~vwd~~~ 1009 (1092)
                      +.+.|.|.|+|++|+++-      ..-++|+...
T Consensus       541 t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  541 TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             ccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            678999999999999864      3355666553

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.41  E-value=2.6e-09  Score=110.45  Aligned_cols=172  Identities=15%  Similarity=0.163  Sum_probs=133.1

Q ss_pred             CCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-cEEEEEcCCceeeEeeccccCCeEE
Q 001362          813 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTG  891 (1092)
Q Consensus       813 dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~  891 (1092)
                      +|.+++..+.|...|.+...+-.++.  ++.+.|.-..+.. +++-++.|..|| .+-|||..+++ +.++...-+.|.+
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~a  406 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEA  406 (668)
T ss_pred             CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce-EEEeeCCccceEE
Confidence            78999999999988888766554433  4667788888888 777889999999 99999999876 4556667788999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eC----CcEEEEEcCC
Q 001362          892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE----THLAIYEAEE  966 (1092)
Q Consensus       892 l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d----~~i~lwd~~~  966 (1092)
                      +..++||+.++.+-....|.+.|++++..+.   +...  ..   +-|+.++|+|+++++|-+ -+    ..|++||+.+
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~~---idkS--~~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRL---IDKS--EY---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCeeE---eccc--cc---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            9999999999999888899999999976322   2211  11   369999999999999986 23    4699999998


Q ss_pred             ceeeeeeccCCCCCEEEEEEecCCCEEEEEEC
Q 001362          967 LTCLKQWFPISSVPISQATFSCDCRMVFTSFV  998 (1092)
Q Consensus       967 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~  998 (1092)
                      ++......  ..+.-.+-+|.|||++|..-+.
T Consensus       479 ~Kiy~vTT--~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         479 GKIYDVTT--PTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             CeEEEecC--CcccccCcccCCCCcEEEEEec
Confidence            88766432  2333445689999998876553

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=99.40  E-value=1.4e-12  Score=124.52  Aligned_cols=171  Identities=21%  Similarity=0.259  Sum_probs=128.7

Q ss_pred             chhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---------HHHHHHHhcCcCHHHHHHHhccCC--CcCCccccch
Q 001362            3 KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFD---------MKFFEDMILDGKWEDVEQYLSSFT--KVDDNRYSTK   71 (1092)
Q Consensus         3 ~~~~~~~~li~q~L~~~g~~~s~~~l~~Es~~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~   71 (1092)
                      ...+|+.|||+.||..+||.++|+.+.+|+|+..+         -..+|.+|..|+-++|+..++++-  .++.+.   .
T Consensus        24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~---~  100 (228)
T KOG2659|consen   24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR---E  100 (228)
T ss_pred             cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch---h
Confidence            45789999999999999999999999999999761         577899999999999999999872  344442   2


Q ss_pred             hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhh
Q 001362           72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQI  151 (1092)
Q Consensus        72 ~~~~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~  151 (1092)
                      +.|.|.+|+++||+..+...+|++|+|++|.|....+++.++.|+..|....++..+...--.--....|.++...+...
T Consensus       101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~a  180 (228)
T KOG2659|consen  101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKVASEVNSA  180 (228)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999998888888889988877655432211100000123466666666665


Q ss_pred             cccCcccccccCCCCCccHHHHHHHHHHHHHHH
Q 001362          152 IEANPILQGKLKFPSIKRQRLRRLINQSLNWQH  184 (1092)
Q Consensus       152 ~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~  184 (1092)
                      |-...-   ..     -..+|..||+.-+..|.
T Consensus       181 iL~~~~---~~-----~~~~l~~llk~~~~~~~  205 (228)
T KOG2659|consen  181 ILASQE---HE-----SEPKLPFLLKLISWAQE  205 (228)
T ss_pred             HHHHhc---cc-----ccchHHHHHHHHHHHHH
Confidence            543211   01     24578888866665553

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.40  E-value=3.2e-09  Score=112.93  Aligned_cols=205  Identities=11%  Similarity=0.087  Sum_probs=131.4

Q ss_pred             eEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-ceee-E
Q 001362          806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI-S  880 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~-~  880 (1092)
                      ..++++|||+++.+..   +..|.+.|+.+++.+..+.-.. ...-...+. +..+  +.+.||......+.+ |+.. .
T Consensus       108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE--EEeecCceEEEEecCCCceEEe
Confidence            3578889999888775   5789999999999988877533 222233332 2222  233455444443332 2211 1


Q ss_pred             ---eeccccCCeE-EEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC----CCCCceEEEEecCCCEE
Q 001362          881 ---KLEGHSKRVT-GLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT----LAPSETHIQFHKDQTRF  951 (1092)
Q Consensus       881 ---~l~~h~~~V~-~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~v~~l~~s~dg~~l  951 (1092)
                         .+.+-..++. .-.|++ ||+++..... |+|.+-|+...+......+........    ..+...-+++++|++.+
T Consensus       184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l  262 (352)
T TIGR02658       184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI  262 (352)
T ss_pred             eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence               1111000000 014456 8888776666 999999987655444333333211100    01345569999999988


Q ss_pred             EEEe---C--------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCceEEeec
Q 001362          952 LLVH---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       952 a~~~---d--------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      .+..   .        +.|.++|..+++.+..+..+  ..+..++|||||+ +|++.. .++.|.+.|+.+++.+.++.
T Consensus       263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            8731   1        57999999999999987665  4889999999999 777665 57889999999999998874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.39  E-value=5.3e-11  Score=118.13  Aligned_cols=340  Identities=14%  Similarity=0.182  Sum_probs=203.2

Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001362          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd-~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      ..++.++|+.   +.++....-|..+-+++.+.|.++++|- .+.++.-..+.... ...+.++.+.++...|++|-.+|
T Consensus        15 ~ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P~~~~~~~y~~e~~~L~vg~~ng   90 (404)
T KOG1409|consen   15 ELLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-PSPCSAMEYVSESRRLYVGQDNG   90 (404)
T ss_pred             hhhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-CCCceEeeeeccceEEEEEEecc
Confidence            3455677777   7788877888888999999999999995 44455444443322 34678999999999999999999


Q ss_pred             eEEEEECCCC----ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccC
Q 001362          645 RIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP  720 (1092)
Q Consensus       645 ~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~  720 (1092)
                      ++.-+.+...    ...+....|...+..+-++                      .....+++.+.|..+ .|.      
T Consensus        91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~----------------------~~~e~V~s~~~dk~~-~~h------  141 (404)
T KOG1409|consen   91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS----------------------LTHEWVLSTGKDKQF-AWH------  141 (404)
T ss_pred             eEEEEEhhhhhhhcchhhhhhhhhcceeeEEec----------------------CCceeEEEeccccce-EEE------
Confidence            9998876533    2333344555555555443                      122233333332211 010      


Q ss_pred             ccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCC
Q 001362          721 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN  800 (1092)
Q Consensus       721 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~  800 (1092)
                                          .+ ..|.         .+--|.+..                                   
T Consensus       142 --------------------c~-e~~~---------~lg~Y~~~~-----------------------------------  156 (404)
T KOG1409|consen  142 --------------------CT-ESGN---------RLGGYNFET-----------------------------------  156 (404)
T ss_pred             --------------------ee-ccCC---------cccceEeec-----------------------------------
Confidence                                00 0000         000000000                                   


Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEE--EcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce
Q 001362          801 SQEAVPCFALSKNDAYLFSAS-GGVISLY--IVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  877 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~s-dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  877 (1092)
                         ...++.+.-.  +...|. .|.+.+-  .......+.++.+|.+.+++++|.+ ...+|.+|..|..+.+||+...+
T Consensus       157 ---~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~  230 (404)
T KOG1409|consen  157 ---PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRK  230 (404)
T ss_pred             ---cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCc
Confidence               0000000000  222222 2333322  2334567888999999999999999 88999999999999999998654


Q ss_pred             -eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec-----CC--------------------C
Q 001362          878 -VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT-----PD--------------------G  931 (1092)
Q Consensus       878 -~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-----~~--------------------~  931 (1092)
                       ....+.+|.+.|..+...+--+.|++++.||.|.+|+.+........-+..     ..                    .
T Consensus       231 g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h  310 (404)
T KOG1409|consen  231 GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQH  310 (404)
T ss_pred             ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhh
Confidence             346778999999999998888999999999999999987643222111000     00                    0


Q ss_pred             CcC-CCCCceEEEEecCCCEEEEEeCCcEEEEEcCCc-------eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 001362          932 VMT-LAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL-------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 1003 (1092)
Q Consensus       932 ~~~-~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~-------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~ 1003 (1092)
                      +.. .+..+-..+-+.-..+...+.+-.+++-|.-..       ..+...-.. ...|+.+.+..+-.+|+|+|.|..|+
T Consensus       311 ~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~tgItamhlqetlglLvTsG~~Rvi~  389 (404)
T KOG1409|consen  311 HCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-KTGITAMHLQETLGLLVTSGTDRVIK  389 (404)
T ss_pred             hhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc-ccceeEEEhhhhccceeecCCceEEE
Confidence            000 000111111122222222244444555443211       112221111 45789999998888999999999999


Q ss_pred             EEEcCCC
Q 001362         1004 IHEASNL 1010 (1092)
Q Consensus      1004 vwd~~~~ 1010 (1092)
                      |||+..-
T Consensus       390 iwd~~~v  396 (404)
T KOG1409|consen  390 IWDVRSV  396 (404)
T ss_pred             EEechhh
Confidence            9998753

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.38  E-value=1.1e-09  Score=116.30  Aligned_cols=269  Identities=14%  Similarity=0.140  Sum_probs=170.7

Q ss_pred             CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC----------CCEEEEEEcc
Q 001362          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----------KHIVQLYAYH  426 (1092)
Q Consensus       357 ~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~----------d~~i~iwd~~  426 (1092)
                      ++|.+.|..+++.+.....                  |.  ....+ +||||+.|+++..          +..|.+||..
T Consensus        27 ~~v~ViD~~~~~v~g~i~~------------------G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~   85 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDG------------------GF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ   85 (352)
T ss_pred             ceEEEEECCCCEEEEEEEc------------------cC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence            8899999999888764221                  11  11224 9999999988755          6789999999


Q ss_pred             CCCcccceEEEcc--c---ccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccE
Q 001362          427 GGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF  501 (1092)
Q Consensus       427 ~~~~~~~~~~~~~--h---~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  501 (1092)
                      +.+.+..+. +..  +   ...-..++++|||+++++.--+.+..|.+.|+.+++.+.++...... .-.   +.++.. 
T Consensus        86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~-~vy---~t~e~~-  159 (352)
T TIGR02658        86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY-HIF---PTANDT-  159 (352)
T ss_pred             cCcEEeEEc-cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc-EEE---EecCCc-
Confidence            987766332 111  1   12234789999999533333345899999999999999988742211 111   111111 


Q ss_pred             EEEEecCCeEEEEEcCCCCceE-----EecCCCCce-EEEEEcc-CCCEEEEEecCCCCceeEEEEeCCCC-----eEEE
Q 001362          502 IFSISVDGKIKAWLYDSLGARV-----DYDAPGLGC-TRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEG-----AIKR  569 (1092)
Q Consensus       502 l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~i-~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~-----~~~~  569 (1092)
                      ...-+.||......++......     .+.....++ ..-.|++ +|++++...     ++.|++.|+...     ....
T Consensus       160 ~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~  234 (352)
T TIGR02658       160 FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIE  234 (352)
T ss_pred             cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceee
Confidence            2233455555544443322211     111100000 0013455 888887765     367999995433     3333


Q ss_pred             EEeecc----ccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC
Q 001362          570 TYQGLQ----LQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT  635 (1092)
Q Consensus       570 ~~~~~~----~~~~~v~~~~~~p~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  635 (1092)
                      .+....    ...+...-++++|+++++++..          ..+.|.++|..+++.+..+....   .+..++++||++
T Consensus       235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgk  311 (352)
T TIGR02658       235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAK  311 (352)
T ss_pred             eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCC
Confidence            322111    1123344599999999998843          22579999999999999988643   478999999999


Q ss_pred             -EEEEEe-CCCeEEEEECCCCceeeec
Q 001362          636 -LLAVIA-NENRIKILETPESNSVDAA  660 (1092)
Q Consensus       636 -~l~~~~-~dg~i~iw~~~~~~~~~~~  660 (1092)
                       +|++.. .++.|.++|..+++.+..+
T Consensus       312 p~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       312 PLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             eEEEEeCCCCCcEEEEECcCCeEEeee
Confidence             777666 5788999999999888776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.38  E-value=4.7e-11  Score=118.27  Aligned_cols=155  Identities=12%  Similarity=0.185  Sum_probs=108.9

Q ss_pred             EEEEEcCCCCCEEEEEeC----------CCcEEEEEcCC-ceeeEeecc-ccCCeEEEEEcCCCCEEEEE--eCCCcEEE
Q 001362          847 TSLAFNPHDNNVIAIGMD----------DSTILIYNARS-SEVISKLEG-HSKRVTGLVFSDALNILVSS--GGDAQIFV  912 (1092)
Q Consensus       847 ~~l~~s~~d~~~lasg~~----------dg~v~iwd~~~-~~~~~~l~~-h~~~V~~l~~spdg~~l~s~--s~Dg~i~i  912 (1092)
                      ..+.|+| .|.+|++-..          -|...+|.++. +.....+.- ..++|.+++|+|+|+.+|..  ..++.|.+
T Consensus         9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            4577888 6666655433          13455555532 233444432 45679999999999987655  35679999


Q ss_pred             EEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe----CCcEEEEEcCCceeeeeeccCCCCCEEEEEEec
Q 001362          913 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEELTCLKQWFPISSVPISQATFSC  988 (1092)
Q Consensus       913 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~----d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~  988 (1092)
                      ||++..      .+.....     ..+..+.|||+|++|+++.    .|.|.+||+.+.+.+....  | ..++.++|||
T Consensus        88 yd~~~~------~i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~-~~~t~~~WsP  153 (194)
T PF08662_consen   88 YDVKGK------KIFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H-SDATDVEWSP  153 (194)
T ss_pred             EcCccc------EeEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c-CcEEEEEEcC
Confidence            999731      2222222     1467899999999999842    4679999999888887632  3 3578999999


Q ss_pred             CCCEEEEEEC------CCcEEEEEcCCCceEEeec
Q 001362          989 DCRMVFTSFV------DGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       989 dg~~l~t~~~------Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      ||++|++++.      |..++||+.. |+++.+..
T Consensus       154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            9999999875      7889999985 66665543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=1.4e-10  Score=130.83  Aligned_cols=238  Identities=11%  Similarity=0.036  Sum_probs=147.0

Q ss_pred             cceeeecccCCCCceEEeecCCCce--EEEEEcCC--CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001362          324 KTVAQTLIEGSSSPMSMDFHPVQHT--LLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~--llasg~~d--~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V  399 (1092)
                      ....+.|..+...+..-+|||||+.  ++.+...+  ..|.+.++.+|+...                    +....+..
T Consensus       174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~  233 (428)
T PRK01029        174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQ  233 (428)
T ss_pred             CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCc
Confidence            3334555555557788999999975  33344444  358888888886554                    22234455


Q ss_pred             EEEEECCCCCEEEEEeC-----CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE--EC
Q 001362          400 NRVVWSPDGSLLGVAYS-----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DA  472 (1092)
Q Consensus       400 ~~l~~spdg~~las~~~-----d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw--d~  472 (1092)
                      ...+|||||+.||..+.     +-.+.+|++.++..-.......++.+.....+|+|||+. ++++...+|...+|  ++
T Consensus       234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~  312 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQI  312 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEEC
Confidence            67899999999998653     223455777653211111112223334567899999995 23333456655555  44


Q ss_pred             CC-CceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001362          473 VT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       473 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      .. +.....+..+...+....|+  +||+.|+..+.+   ..|.+||+.+++...... ....+....|+|||+.|+...
T Consensus       313 ~~~g~~~~~lt~~~~~~~~p~wS--PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~  389 (428)
T PRK01029        313 DPEGQSPRLLTKKYRNSSCPAWS--PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSA  389 (428)
T ss_pred             cccccceEEeccCCCCccceeEC--CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEE
Confidence            32 33345555555566667774  567777766543   368999998876654332 234567789999999988765


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC
Q 001362          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK  590 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  590 (1092)
                      .. .+...|+++|+.+++......+ .   +.+...+|+|-.
T Consensus       390 ~~-~g~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~~  426 (428)
T PRK01029        390 GN-SNESELYLISLITKKTRKIVIG-S---GEKRFPSWGAFP  426 (428)
T ss_pred             CC-CCCceEEEEECCCCCEEEeecC-C---CcccCceecCCC
Confidence            43 3456799999988876554432 2   445667777753

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=3.8e-10  Score=118.94  Aligned_cols=334  Identities=13%  Similarity=0.188  Sum_probs=202.3

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-----------C
Q 001362          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----------K  465 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----------~  465 (1092)
                      -.-+.+.|||-|.||++--..| |.+|--++-..++   .+ .|.+ |..+.|||..+  +|+|-+..           .
T Consensus       211 WTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~---RF-~Hp~-Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~  282 (698)
T KOG2314|consen  211 WTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ---RF-YHPG-VQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQ  282 (698)
T ss_pred             ceeeeEEecCCceEEEEEeccc-eeeecCccHHHHH---hc-cCCC-ceeeecCCccc--eEEEecCCccccCcccCCCc
Confidence            3456799999999999998887 9999765544333   33 4665 89999999999  78887632           4


Q ss_pred             cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001362          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      .++|||+.+|...+.|....                       +..-.|                  .-+.||.|+++++
T Consensus       283 ~l~IWDI~tG~lkrsF~~~~-----------------------~~~~~W------------------P~frWS~DdKy~A  321 (698)
T KOG2314|consen  283 QLIIWDIATGLLKRSFPVIK-----------------------SPYLKW------------------PIFRWSHDDKYFA  321 (698)
T ss_pred             eEEEEEccccchhcceeccC-----------------------CCcccc------------------ceEEeccCCceeE
Confidence            67888888887777665211                       111112                  1257889999998


Q ss_pred             EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeCCC
Q 001362          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~  620 (1092)
                      ....     ..|.+++..+..++   ......-..|....|+|.++.|+.-+..     ..+.+-.+.+++.+.+.....
T Consensus       322 rm~~-----~sisIyEtpsf~ll---d~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn  393 (698)
T KOG2314|consen  322 RMTG-----NSISIYETPSFMLL---DKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN  393 (698)
T ss_pred             Eecc-----ceEEEEecCceeee---cccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee
Confidence            7653     34888887664433   2222223678888999998777764321     235666667777666655432


Q ss_pred             CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcc
Q 001362          621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP  700 (1092)
Q Consensus       621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  700 (1092)
                      -  .-..+-|-.+|.+|++--.-.       ...+       ..+..                                 
T Consensus       394 V--sDckLhWQk~gdyLcvkvdR~-------tK~~-------~~g~f---------------------------------  424 (698)
T KOG2314|consen  394 V--SDCKLHWQKSGDYLCVKVDRH-------TKSK-------VKGQF---------------------------------  424 (698)
T ss_pred             e--eccEEEeccCCcEEEEEEEee-------cccc-------ccceE---------------------------------
Confidence            1  123456777888887543210       0000       00000                                 


Q ss_pred             ceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC---CeeEEEeecCCCcCcCcccccc
Q 001362          701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTK  777 (1092)
Q Consensus       701 l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~lw~~~~~~~~~~~~~~~~  777 (1092)
                             ..+.|+.+...+      +......-...|-.++|-|.|..+++.+.+   .++.+|.+....          
T Consensus       425 -------~n~eIfrireKd------Ipve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~----------  481 (698)
T KOG2314|consen  425 -------SNLEIFRIREKD------IPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI----------  481 (698)
T ss_pred             -------eeEEEEEeeccC------CCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC----------
Confidence                   111222221100      000001134567889999999988877654   456666554211          


Q ss_pred             cCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCCceeeEEecCCCCCeEEEEEcC
Q 001362          778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSLAFNP  853 (1092)
Q Consensus       778 ~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~  853 (1092)
                                +...+...+    .......+.|+|.|++++.+.    .|.+.++|+.-..+..+-.......+.+.|.|
T Consensus       482 ----------~~~~lVk~~----dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP  547 (698)
T KOG2314|consen  482 ----------KKPSLVKEL----DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP  547 (698)
T ss_pred             ----------Cchhhhhhh----cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECC
Confidence                      010111111    234556789999999999885    47899999875444333333345678899999


Q ss_pred             CCCCEEEEEeCCC------cEEEEEcC
Q 001362          854 HDNNVIAIGMDDS------TILIYNAR  874 (1092)
Q Consensus       854 ~d~~~lasg~~dg------~v~iwd~~  874 (1092)
                       .|+|+++++...      --+||++.
T Consensus       548 -tGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  548 -TGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             -CCCEEEEeeehhhhccccceEEEEee
Confidence             899999988644      34555554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=3.7e-10  Score=127.35  Aligned_cols=243  Identities=12%  Similarity=0.077  Sum_probs=151.2

Q ss_pred             CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE---EEeCC--CEEEEEEccCCCcc
Q 001362          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDA  431 (1092)
Q Consensus       357 ~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la---s~~~d--~~i~iwd~~~~~~~  431 (1092)
                      ..|.+.|...+....                    ++.....+..-+|||||+.++   +...+  ..|.+.++.+|+..
T Consensus       165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~  224 (428)
T PRK01029        165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK  224 (428)
T ss_pred             ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence            367777877665432                    444556677889999998633   33333  36888899887643


Q ss_pred             cceEEEcccccceeEEEEecCCCcEEEEEEeC----CCcEEEEECCCC---ceeEEEecCCcCeEEEeecccCCccEEEE
Q 001362          432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFS  504 (1092)
Q Consensus       432 ~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~----d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  504 (1092)
                      +    +....+.....+|||||+++ +++...    |..+.+|++.++   +......++.......+|  ++||+.|+.
T Consensus       225 ~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf  297 (428)
T PRK01029        225 K----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVF  297 (428)
T ss_pred             E----eecCCCCccceEECCCCCEE-EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEE
Confidence            2    33344455678999999953 333322    333455777653   333333233233455667  557777766


Q ss_pred             Ee-cCCeEEEEEc--CC-CCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCc
Q 001362          505 IS-VDGKIKAWLY--DS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS  580 (1092)
Q Consensus       505 ~~-~dg~i~vwd~--~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~  580 (1092)
                      .+ .+|...+|.+  +. ......+......+....|+|||+.|+..+.. .+...|++||+.+++......+ .   ..
T Consensus       298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~  372 (428)
T PRK01029        298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---EN  372 (428)
T ss_pred             EECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CC
Confidence            55 4676566644  32 22233344444566788999999999887643 2356799999998876544332 2   35


Q ss_pred             eEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001362          581 VSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       581 v~~~~~~p~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      +....|+|||+.|+..+.   ...|+++|+.+++........   ..+...+|+|-.
T Consensus       373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~---g~~~~p~Ws~~~  426 (428)
T PRK01029        373 KESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGS---GEKRFPSWGAFP  426 (428)
T ss_pred             ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC---CcccCceecCCC
Confidence            667899999998876442   356888999887765544322   235667887743

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.36  E-value=7.8e-09  Score=113.93  Aligned_cols=249  Identities=15%  Similarity=0.220  Sum_probs=160.6

Q ss_pred             CCcEEEEEECCCCCEEEEEeC----CCEEEEEEccCC-CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001362          396 GVSVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~----d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      ......++++|++++|.+...    ++.|..|++... ..+...............++++|++++ ++++...+|+|.++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~  114 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVF  114 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEE
Confidence            356777999999999999866    568999998875 333333333323345568999999994 34444569999999


Q ss_pred             ECCC-CceeEE---Ee--c--------CCcCeEEEeecccCCccEEEEEe-cCCeEEEEEcCCCCc-e---EEe-cCCCC
Q 001362          471 DAVT-GSRTYS---FE--G--------HGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA-R---VDY-DAPGL  530 (1092)
Q Consensus       471 d~~~-~~~~~~---~~--~--------~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~-~---~~~-~~~~~  530 (1092)
                      ++.. |.....   +.  +        ......++.+  +++++++++.. ....|.+|+++.... +   ..+ ...+.
T Consensus       115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~  192 (345)
T PF10282_consen  115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS  192 (345)
T ss_dssp             EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred             EccCCcccceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence            9987 443322   21  1        1223456666  45667776654 345799999987662 1   122 23455


Q ss_pred             ceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeE--EEEEeecc---ccCCceEEEEEcCCCCEEEEEe-CCCcE
Q 001362          531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG-DDHVI  602 (1092)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~--~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~s-~dg~i  602 (1092)
                      ....++|+|+++++++..+   ..+.|.+++..  ++..  +..+....   ........+.++|++++|+++. ..+.|
T Consensus       193 GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI  269 (345)
T PF10282_consen  193 GPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI  269 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred             CCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence            7889999999999988764   35567777776  5533  22222211   1112578899999999998865 66789


Q ss_pred             EEEECC--CCce--EEEEeCCCCCCCCceEEEccCCCEEEEEeC-CCeEEEEECC
Q 001362          603 KIWDMN--KVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETP  652 (1092)
Q Consensus       603 ~iwd~~--~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~  652 (1092)
                      .+|++.  ++.+  +..+...+  .....++++|+|++|+++.. ++.|.+|++.
T Consensus       270 ~vf~~d~~~g~l~~~~~~~~~G--~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  270 SVFDLDPATGTLTLVQTVPTGG--KFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEECTTTTTEEEEEEEEESS--SSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEecCCCceEEEEEEeCCC--CCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            999983  3443  33333322  23588999999999998874 6799999764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.35  E-value=6e-11  Score=117.54  Aligned_cols=266  Identities=12%  Similarity=0.184  Sum_probs=176.4

Q ss_pred             CCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeec-ccccceeeEeeecCCCCcEEEEEECCCCC--
Q 001362          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI-GACSMLFKTALVRDPGVSVNRVVWSPDGS--  409 (1092)
Q Consensus       333 h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~-~~~~~~~~~~~l~~h~~~V~~l~~spdg~--  409 (1092)
                      ..+-|.+|.|..+|. +||+|..+|.|.++.-+.... .  +++++-. ......|....--.-...|..+.|.+++.  
T Consensus        24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a   99 (433)
T KOG1354|consen   24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-G--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA   99 (433)
T ss_pred             hhcceeeEEeecccc-eEeecCCCCeEEEeecccccc-c--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence            356899999999999 699999999999997543221 0  1111100 01111121111112346789999999754  


Q ss_pred             EEEEEeCCCEEEEEEccCCCccc------------------c--------------eEE-EcccccceeEEEEecCCCcE
Q 001362          410 LLGVAYSKHIVQLYAYHGGSDAR------------------Q--------------QLE-IDAHVGNVNDLAFSAPCKQI  456 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~------------------~--------------~~~-~~~h~~~v~~~~~s~d~~~l  456 (1092)
                      .++..+.|.+|++|.+.......                  .              ... -.+|+.-|+++.++.|+.  
T Consensus       100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E--  177 (433)
T KOG1354|consen  100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE--  177 (433)
T ss_pred             EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--
Confidence            55666789999999986432111                  0              001 236888899999999998  


Q ss_pred             EEEEEeCCCcEEEEECCCCcee---EEEec-----CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc------e
Q 001362          457 SVITCGDDKTIKVWDAVTGSRT---YSFEG-----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA------R  522 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~---~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------~  522 (1092)
                      .++++. |=.|.+|+++--..-   ..++.     .+..|++..|+|.. ...++-.+..|+|++.|++....      .
T Consensus       178 t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~-cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl  255 (433)
T KOG1354|consen  178 TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH-CNVFVYSSSKGTIRLCDMRQSALCDAHSKL  255 (433)
T ss_pred             eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH-ccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence            566654 888999998743222   22222     33567888888874 36888889999999999984321      1


Q ss_pred             EEec----------CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeecccc---------CCce-
Q 001362          523 VDYD----------APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQ---------HNSV-  581 (1092)
Q Consensus       523 ~~~~----------~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~---------~~~v-  581 (1092)
                      ....          .--..|..+.|+++|+++++-.     -.+|.+||+. ..+.+.+++.|..-         .+.| 
T Consensus       256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If  330 (433)
T KOG1354|consen  256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF  330 (433)
T ss_pred             hccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchh
Confidence            1111          1112578899999999999853     4569999994 56677777766421         2222 


Q ss_pred             --EEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001362          582 --SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       582 --~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~  611 (1092)
                        ..++|+.++.++++|+....+++++...|.
T Consensus       331 dKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  331 DKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             heeEEEEcCCcceEecccccceEEEecCCCCc
Confidence              347899999999999999999999965543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=2.1e-10  Score=131.62  Aligned_cols=229  Identities=13%  Similarity=0.100  Sum_probs=144.7

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCC--CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d--~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l  402 (1092)
                      ...+.+..+.+.+...+|||||++++.+...+  ..|.+||+.+|+...                    +....+.+...
T Consensus       189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~  248 (430)
T PRK00178        189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAP  248 (430)
T ss_pred             CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCe
Confidence            34455666777899999999999655554333  368999999887543                    22233445578


Q ss_pred             EECCCCCEEEEE-eCCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCce
Q 001362          403 VWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSR  477 (1092)
Q Consensus       403 ~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~  477 (1092)
                      +|||||++|+.. +.++  .|.+||+.+++..    .+..+........|+|||+.+ +++...++  .|.++|+.+++.
T Consensus       249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~i-~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRTL-YFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCEE-EEEECCCCCceEEEEECCCCCE
Confidence            999999999854 3444  6888899887532    344555667778999999952 33333333  577888888775


Q ss_pred             eEEEecCCcCeEEEeecccCCccEEEEEecC-C--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001362          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      .. +...........|  ++|++.++..+.+ +  .|.+||+.++........  .......|+|||+.++..... .+.
T Consensus       324 ~~-lt~~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~-~g~  397 (430)
T PRK00178        324 ER-VTFVGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ-QGR  397 (430)
T ss_pred             EE-eecCCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec-CCc
Confidence            33 2211222233455  4566777766543 3  477888887654432221  222356899999999887653 335


Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001362          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p  588 (1092)
                      ..+++++...+ ..+.+....   +.+...+|+|
T Consensus       398 ~~l~~~~~~g~-~~~~l~~~~---g~~~~p~ws~  427 (430)
T PRK00178        398 GVLMLVSINGR-VRLPLPTAQ---GEVREPSWSP  427 (430)
T ss_pred             eEEEEEECCCC-ceEECcCCC---CCcCCCccCC
Confidence            66888887543 333444332   4455566665

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.33  E-value=6.2e-09  Score=105.54  Aligned_cols=252  Identities=13%  Similarity=0.175  Sum_probs=172.3

Q ss_pred             CCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCC--ceee--EEecCCCCCeEEEEEcCCCCCEEEEEeC-CCcEEEE
Q 001362          801 SQEAVPCFALSKNDAYLFSAS----GGVISLYIVMT--FKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMD-DSTILIY  871 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~s----dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg~v~iw  871 (1092)
                      ....++-++++|+++.|.++.    +|.|..|.+..  |+..  ........+-+.+++++ ++++|+++.. -|.|.++
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence            566778899999999888875    36788877764  4432  22222233448899999 8988888875 4799999


Q ss_pred             EcCC-ceee--EeeccccCC----------eEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001362          872 NARS-SEVI--SKLEGHSKR----------VTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  936 (1092)
Q Consensus       872 d~~~-~~~~--~~l~~h~~~----------V~~l~~spdg~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  936 (1092)
                      -+.. |.+.  .....|.+.          +....|.|++++|++.+  .|+ |.+|+++.+............|     
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G-----  190 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG-----  190 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence            9965 4322  122236555          88899999999999875  465 9999999877555444444333     


Q ss_pred             CCceEEEEecCCCEEEEE--eCCcEEEEEcCCc-eeeeee------ccC--CCCCEEEEEEecCCCEEEEEEC-CCcEEE
Q 001362          937 PSETHIQFHKDQTRFLLV--HETHLAIYEAEEL-TCLKQW------FPI--SSVPISQATFSCDCRMVFTSFV-DGTLSI 1004 (1092)
Q Consensus       937 ~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~-~~~~~~------~~~--h~~~v~~l~fs~dg~~l~t~~~-Dg~i~v 1004 (1092)
                      ...+.++|+|++++..+.  -+++|.+|..... ..+..+      ...  -......+..++||++|.++.. ...|.+
T Consensus       191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~  270 (346)
T COG2706         191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV  270 (346)
T ss_pred             CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            357899999999988774  5689999998763 122111      111  1556778899999999998753 347888


Q ss_pred             EEcCCCce-EEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCC-cEEEEeCCCCCCcc
Q 001362         1005 HEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTW 1067 (1092)
Q Consensus      1005 wd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg-~v~~w~~~~~~~~~ 1067 (1092)
                      +.+....- +....   +.+    .....|..+.++|. +++|+++..++ .|.+|.+....++.
T Consensus       271 f~V~~~~g~L~~~~---~~~----teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG~L  327 (346)
T COG2706         271 FSVDPDGGKLELVG---ITP----TEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETGRL  327 (346)
T ss_pred             EEEcCCCCEEEEEE---Eec----cCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCceE
Confidence            88765422 22221   111    22355777889984 67777777664 79999998776654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=1.7e-10  Score=131.38  Aligned_cols=228  Identities=14%  Similarity=0.106  Sum_probs=141.5

Q ss_pred             eeeecccCCCCceEEeecCCCceEEEEEcCCC--cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~--~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ..+.+..+...+.+.+|||||++++.+...++  .|.+||+.+++....                    ....+.....+
T Consensus       209 ~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~  268 (448)
T PRK04792        209 NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPR  268 (448)
T ss_pred             CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCee
Confidence            34556666778999999999996555544333  588899988875431                    11222344689


Q ss_pred             ECCCCCEEEEE-eCCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCcee
Q 001362          404 WSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRT  478 (1092)
Q Consensus       404 ~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~  478 (1092)
                      |||||+.|+.. +.++  .|.+||+.+++..    .+..+.......+|+|||+. ++++...++  .|.++|+.+++..
T Consensus       269 wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~  343 (448)
T PRK04792        269 FSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVS  343 (448)
T ss_pred             ECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEE
Confidence            99999988764 4555  4788888876532    34455556778899999995 233343344  4667788777654


Q ss_pred             EEEecCCcCeEEEeecccCCccEEEEEec-CCe--EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001362          479 YSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  555 (1092)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~  555 (1092)
                      . +..........+|  ++||++|+..+. ++.  |.++|+.++.... +... .......|+|||+.++..... .+..
T Consensus       344 ~-Lt~~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~-~g~~  417 (448)
T PRK04792        344 R-LTFEGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTY-QGKQ  417 (448)
T ss_pred             E-EecCCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEec-CCce
Confidence            3 2222222334456  456667766554 444  4556766655433 2221 122345799999999887653 3456


Q ss_pred             eEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001362          556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p  588 (1092)
                      .+++++. +|.....+....   +.+...+|+|
T Consensus       418 ~l~~~~~-~G~~~~~l~~~~---g~~~~p~Wsp  446 (448)
T PRK04792        418 VLAAVSI-DGRFKARLPAGQ---GEVKSPAWSP  446 (448)
T ss_pred             EEEEEEC-CCCceEECcCCC---CCcCCCccCC
Confidence            6888887 455555565443   4566667776

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.33  E-value=1.7e-10  Score=116.88  Aligned_cols=116  Identities=13%  Similarity=0.176  Sum_probs=102.9

Q ss_pred             CCeeEEEEecC--CCEEEEEe-CCeEEEEEcCCce-eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001362          803 EAVPCFALSKN--DAYLFSAS-GGVISLYIVMTFK-TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1092)
Q Consensus       803 ~~v~~~~~s~d--g~~l~~~s-dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1092)
                      -.++++.|-+.  ...+|++. -+.+++||...++ ++..+.-...+++++...| +++++++|..-|.+..||+.+++.
T Consensus       203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl  281 (412)
T KOG3881|consen  203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKL  281 (412)
T ss_pred             eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCcee
Confidence            34567778777  77888887 5999999998764 5677777788999999999 999999999999999999999998


Q ss_pred             eEe-eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001362          879 ISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  919 (1092)
Q Consensus       879 ~~~-l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~  919 (1092)
                      ... +.+-.+.|+++..+|.+++||++|-|+.|||+|+++..
T Consensus       282 ~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  282 LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence            877 88999999999999999999999999999999999844

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.31  E-value=5.3e-10  Score=110.98  Aligned_cols=357  Identities=14%  Similarity=0.212  Sum_probs=211.9

Q ss_pred             ccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-----eeEEEecCC------------cCeEEEeecccCCccEEE
Q 001362          441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHG------------APVYSLCPHAKENIHFIF  503 (1092)
Q Consensus       441 ~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~~~~l~  503 (1092)
                      ...|.++.|...|.  +|++|..+|.|.++.-+...     ....++.|.            ..|+.+.|....+...++
T Consensus        25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            44688999999999  89999999999999643322     223344443            457788888888888899


Q ss_pred             EEecCCeEEEEEcCCCCceEE-----ecCCCCceEEEEE---ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001362          504 SISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1092)
Q Consensus       504 s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~i~~~~~---s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1092)
                      ..+.|.+|++|.+........     .......++++..   .+....+.                   ..+.+.+..  
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aN--  161 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYAN--  161 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccc--
Confidence            999999999998876544331     1111112222211   11111111                   111222221  


Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eEEEEeCCC-----CCCCCceEEEcc-CCCEEEEEeCCCeEEE
Q 001362          576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ-LLTTIDAGG-----GLPENPRICFNK-NGTLLAVIANENRIKI  648 (1092)
Q Consensus       576 ~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~-----~~~~v~~v~~s~-~~~~l~~~~~dg~i~i  648 (1092)
                      .|...|.++.++.|...++++ .|=.|.+|+++--. .........     -...|++..|+| ..++++-.+..|+|++
T Consensus       162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            124779999999999888876 46779999987432 222222111     112377888999 4567778888899999


Q ss_pred             EECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccccc
Q 001362          649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  728 (1092)
Q Consensus       649 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~  728 (1092)
                      -|++....-..                                                 .-+++..             
T Consensus       241 cDmR~~aLCd~-------------------------------------------------hsKlfEe-------------  258 (433)
T KOG1354|consen  241 CDMRQSALCDA-------------------------------------------------HSKLFEE-------------  258 (433)
T ss_pred             eechhhhhhcc-------------------------------------------------hhhhhcc-------------
Confidence            99874321110                                                 0011110             


Q ss_pred             CCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001362          729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF  808 (1092)
Q Consensus       729 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~  808 (1092)
                      |.            .|..+.                                          ...      +--..|..+
T Consensus       259 pe------------dp~~rs------------------------------------------ffs------eiIsSISDv  278 (433)
T KOG1354|consen  259 PE------------DPSSRS------------------------------------------FFS------EIISSISDV  278 (433)
T ss_pred             cc------------CCcchh------------------------------------------hHH------HHhhhhhce
Confidence            00            000000                                          000      123456778


Q ss_pred             EEecCCCEEEEEeCCeEEEEEc-CCceeeEEecCCC------------CCe---EEEEEcCCCCCEEEEEeCCCcEEEEE
Q 001362          809 ALSKNDAYLFSASGGVISLYIV-MTFKTILTIMPPS------------PTA---TSLAFNPHDNNVIAIGMDDSTILIYN  872 (1092)
Q Consensus       809 ~~s~dg~~l~~~sdg~i~iwd~-~~~~~~~~~~~~~------------~~i---~~l~~s~~d~~~lasg~~dg~v~iwd  872 (1092)
                      .|+++|+|+++-+--+|++||+ ...+++.+++-|.            ..|   ..++|+- ++.+++||+....+++|+
T Consensus       279 KFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  279 KFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             EEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEec
Confidence            8999999998887788999998 4555666555443            122   4678988 788999999999999999


Q ss_pred             cCCceee-EeeccccCC--eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC
Q 001362          873 ARSSEVI-SKLEGHSKR--VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1092)
Q Consensus       873 ~~~~~~~-~~l~~h~~~--V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  949 (1092)
                      +..|... .++......  ...+   ..-+.+.+++......+|-..            .+-    ...+...+|+|..+
T Consensus       358 ~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~------------ldf----~kkilh~aWhp~en  418 (433)
T KOG1354|consen  358 LARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA------------LDF----RKKILHTAWHPKEN  418 (433)
T ss_pred             CCCCcceeecccccccCCccccc---ccceeeecCCCccccccccch------------hhh----hhHHHhhccCCccc
Confidence            8766432 333322221  1111   112334444443332222110            000    01467789999999


Q ss_pred             EEEEEeCCcEEEEE
Q 001362          950 RFLLVHETHLAIYE  963 (1092)
Q Consensus       950 ~la~~~d~~i~lwd  963 (1092)
                      .+|++.-+.++||.
T Consensus       419 ~ia~aatnnlyif~  432 (433)
T KOG1354|consen  419 SIAVAATNNLYIFQ  432 (433)
T ss_pred             eeeeeecCceEEec
Confidence            99998777787763

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=6.5e-10  Score=126.53  Aligned_cols=223  Identities=15%  Similarity=0.109  Sum_probs=140.9

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc--
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--  466 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--  466 (1092)
                      +..+...+.+.+|||||++|+..+.+   ..|.+||+.+++...    +....+.....+|+|||+. ++++.+.++.  
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~  287 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE  287 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence            44567789999999999999987543   368999998875322    2222334457899999996 3344556664  


Q ss_pred             EEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe-cCCe--EEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001362          467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  543 (1092)
Q Consensus       467 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~  543 (1092)
                      |.+||+++++. ..+..+.......+|++  |++.|+..+ .++.  |.++|+.+++... +..........+|+|||++
T Consensus       288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~  363 (448)
T PRK04792        288 IYVVDIATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRS  363 (448)
T ss_pred             EEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCE
Confidence            77889887764 34444555556677754  666666554 3444  5555666554332 2222233345789999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceEEEEeCCC
Q 001362          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DH--VIKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~-dg--~i~iwd~~~~~~~~~~~~~~  620 (1092)
                      ++..+.. .+...|.++|+.+++... +....    ......|+|+|+.++..+. ++  .+++++. +|.....+..+.
T Consensus       364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~  436 (448)
T PRK04792        364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ  436 (448)
T ss_pred             EEEEEec-CCceEEEEEECCCCCeEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence            9887653 234568889998887543 22211    1123479999999877553 33  3677776 455555555432


Q ss_pred             CCCCCceEEEcc
Q 001362          621 GLPENPRICFNK  632 (1092)
Q Consensus       621 ~~~~v~~v~~s~  632 (1092)
                        ..+...+|+|
T Consensus       437 --g~~~~p~Wsp  446 (448)
T PRK04792        437 --GEVKSPAWSP  446 (448)
T ss_pred             --CCcCCCccCC
Confidence              2356677776

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=9.3e-10  Score=126.26  Aligned_cols=237  Identities=14%  Similarity=0.101  Sum_probs=150.1

Q ss_pred             cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccce
Q 001362          358 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQ  434 (1092)
Q Consensus       358 ~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~  434 (1092)
                      .|.++|.+.+....                    +..+...+...+|||||+.|+..+.+   ..|.+||+.+++...  
T Consensus       180 ~l~~~d~~g~~~~~--------------------l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--  237 (430)
T PRK00178        180 TLQRSDYDGARAVT--------------------LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--  237 (430)
T ss_pred             EEEEECCCCCCceE--------------------EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--
Confidence            47788877654332                    44577789999999999999887643   469999999875432  


Q ss_pred             EEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEec-CC--
Q 001362          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--  509 (1092)
Q Consensus       435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--  509 (1092)
                        +....+.+...+|+|||+. ++++.+.++  .|.+||+.+++.. .+..+........|+  +|++.++..+. +|  
T Consensus       238 --l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~  311 (430)
T PRK00178        238 --ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKP  311 (430)
T ss_pred             --ccCCCCCcCCeEECCCCCE-EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEEC--CCCCEEEEEECCCCCc
Confidence              3333445567899999995 333454454  6888899887654 454455555556674  46666665543 44  


Q ss_pred             eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001362          510 KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA  589 (1092)
Q Consensus       510 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~  589 (1092)
                      .|.++++.+++.... ...........|+|||+.++...... +...|+++|+.+++....... .    ......|+|+
T Consensus       312 ~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg~~~~lt~~-~----~~~~p~~spd  384 (430)
T PRK00178        312 QIYKVNVNGGRAERV-TFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRGSVRILTDT-S----LDESPSVAPN  384 (430)
T ss_pred             eEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCCCEEEccCC-C----CCCCceECCC
Confidence            466667766554322 22223334578999999998876432 345699999998865332222 1    1224589999


Q ss_pred             CCEEEEEeCC---CcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001362          590 KDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       590 ~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      |+.++..+.+   ..+++++... .....+..+.  ..+...+|+|
T Consensus       385 g~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~--g~~~~p~ws~  427 (430)
T PRK00178        385 GTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ--GEVREPSWSP  427 (430)
T ss_pred             CCEEEEEEecCCceEEEEEECCC-CceEECcCCC--CCcCCCccCC
Confidence            9999876643   3466777754 3333443322  2355666765

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.31  E-value=1.9e-10  Score=113.97  Aligned_cols=163  Identities=18%  Similarity=0.328  Sum_probs=114.7

Q ss_pred             EEEEEECCCCCEEEEEeC----------CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEE
Q 001362          399 VNRVVWSPDGSLLGVAYS----------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~----------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  468 (1092)
                      =..+.|+|+|++|++-..          -+...+|.+...........+. ..++|.+++|+|+|+.+.++.|..++.|.
T Consensus         8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~   86 (194)
T PF08662_consen    8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVT   86 (194)
T ss_pred             eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccE
Confidence            345889999999887543          1245666664332222221222 34579999999999976666777788999


Q ss_pred             EEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001362          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       469 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      +||++ ++.+..+.  ...++.+.|+|  +|++|++++.+   |.|.+||.+..+.+....  ...+..++|+|||++++
T Consensus        87 lyd~~-~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~  159 (194)
T PF08662_consen   87 LYDVK-GKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLA  159 (194)
T ss_pred             EEcCc-ccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEE
Confidence            99986 66676664  56788899955  67899988754   679999999666655543  33578999999999999


Q ss_pred             EEecC--CCCceeEEEEeCCCCeEEEE
Q 001362          546 SCGTS--KEGESFLVEWNESEGAIKRT  570 (1092)
Q Consensus       546 ~~~~~--~~~~~~i~iwd~~~~~~~~~  570 (1092)
                      ++...  ...++.+.||+.. |+.+..
T Consensus       160 ta~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  160 TATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             EEEeccceeccccEEEEEec-CeEeEe
Confidence            88753  1235668899874 555444

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.31  E-value=3e-10  Score=130.47  Aligned_cols=216  Identities=19%  Similarity=0.163  Sum_probs=141.0

Q ss_pred             cceeeecccCCCCceEEeecCCCceEEEEEcCC--CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEE
Q 001362          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  401 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d--~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~  401 (1092)
                      ....+.+..+...+...+|||||++++.+...+  ..|.+||+.+++...                    +..+...+.+
T Consensus       179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~  238 (417)
T TIGR02800       179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGA  238 (417)
T ss_pred             CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccc
Confidence            334455666776899999999999654443322  479999999886543                    2235556778


Q ss_pred             EEECCCCCEEEEE-eCC--CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-CCC--cEEEEECCCC
Q 001362          402 VVWSPDGSLLGVA-YSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVTG  475 (1092)
Q Consensus       402 l~~spdg~~las~-~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d~--~i~vwd~~~~  475 (1092)
                      ++|+|||+.|+.. +.+  ..|++||+.++...    .+..+........|+|||++  |+..+ .++  .|.++|+.++
T Consensus       239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~  312 (417)
T TIGR02800       239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGG  312 (417)
T ss_pred             eEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCC
Confidence            9999999988754 333  35889999876432    24445555667899999994  44433 333  5888888777


Q ss_pred             ceeEEEecCCcCeEEEeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001362          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      +. ..+..+...+....|+  +++.+++.++.++   .|.+||+.+..... +... .......|+|||++|+.....+ 
T Consensus       313 ~~-~~l~~~~~~~~~~~~s--pdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~-  386 (417)
T TIGR02800       313 EV-RRLTFRGGYNASPSWS--PDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRG-  386 (417)
T ss_pred             CE-EEeecCCCCccCeEEC--CCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCC-
Confidence            64 3444455556666774  4677888887775   78888887754332 2222 2234568999999998877543 


Q ss_pred             CceeEEEEeCCCCeEEEEEe
Q 001362          553 GESFLVEWNESEGAIKRTYQ  572 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~  572 (1092)
                      +...+++.+.. +.....+.
T Consensus       387 ~~~~l~~~~~~-g~~~~~~~  405 (417)
T TIGR02800       387 GRGVLGLVSTD-GRFRARLP  405 (417)
T ss_pred             CcEEEEEEECC-CceeeECC
Confidence            34556666643 44444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.30  E-value=6.4e-10  Score=127.74  Aligned_cols=210  Identities=15%  Similarity=0.075  Sum_probs=138.4

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC--c
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T  466 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~  466 (1092)
                      +..+...+...+|||||++||.++.+   ..|++||+.+++..    .+..+.+.+.+++|+|||+. ++++.+.++  .
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~  259 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD  259 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence            44567789999999999999988643   47999999987532    23345566778999999985 334444444  5


Q ss_pred             EEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEec-CC--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001362          467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  543 (1092)
Q Consensus       467 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~  543 (1092)
                      |++||+.++... .+..+........|+  +|++.|+..+. ++  .|.++|+.+... ..+...........|+|+|++
T Consensus       260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~  335 (417)
T TIGR02800       260 IYVMDLDGKQLT-RLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL  335 (417)
T ss_pred             EEEEECCCCCEE-ECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence            889998887643 344444444455664  47777766554 33  477777765543 333334456677899999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceEEEEe
Q 001362          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~  617 (1092)
                      ++...... +...|++||+.++.... +...    .......|+|++++|+..+.++   .+++.+. ++.....+.
T Consensus       336 i~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~----~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~  405 (417)
T TIGR02800       336 IAFVHREG-GGFNIAVMDLDGGGERV-LTDT----GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP  405 (417)
T ss_pred             EEEEEccC-CceEEEEEeCCCCCeEE-ccCC----CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence            99887533 34579999998865432 2221    1234457999999998876544   3455554 344444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.28  E-value=7.5e-11  Score=117.06  Aligned_cols=358  Identities=14%  Similarity=0.138  Sum_probs=227.7

Q ss_pred             ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE--EecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001362          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      ..++.++||.+.|+.....+..+  -+++.+.|.++|+|--+...+..  .......+++++.+.++.+.|+++-.    
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~----   88 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD----   88 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----
Confidence            34567789999998887766554  59999999999999654433322  23334557899999999999998875    


Q ss_pred             ceeEEEEeC----CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001362          554 ESFLVEWNE----SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1092)
Q Consensus       554 ~~~i~iwd~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1092)
                      .+.+.-+..    +.....+.+..|.   ..+..+-|+....++++.+.|..+.---.+.+..+........   ..++.
T Consensus        89 ngtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~  162 (404)
T KOG1409|consen   89 NGTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQ  162 (404)
T ss_pred             cceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCc
Confidence            444666544    3444556666666   8899999999889999999988776444455554433322111   11122


Q ss_pred             EccCCCEEEEEeCCCeEEEEECC--CCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001362          630 FNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       630 ~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      +.-.  +..+|...|.+.+..+.  .-..+..+.+|...+.++++.                      +....+.++..|
T Consensus       163 ~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd----------------------~~~~~LfSg~~d  218 (404)
T KOG1409|consen  163 FDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD----------------------PGQRLLFSGASD  218 (404)
T ss_pred             eeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc----------------------CCCcEEEecccc
Confidence            2211  55666667777776554  346788899999999999997                      557788999999


Q ss_pred             cccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccc-----cCCcc
Q 001362          708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK-----VPPRL  782 (1092)
Q Consensus       708 ~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~-----~~~~~  782 (1092)
                      ..+.+||+........     ...+|...|..+...+--+.+++++.||.|.+|+++.......+.....     ..+..
T Consensus       219 ~~vi~wdigg~~g~~~-----el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpff  293 (404)
T KOG1409|consen  219 HSVIMWDIGGRKGTAY-----ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFF  293 (404)
T ss_pred             CceEEEeccCCcceee-----eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHH
Confidence            9999999875444333     2345888899999888899999999999999999986654333332221     22333


Q ss_pred             ccCCCCCceeeecCCCC--CC-CCCeeEEEEecCCCEEEEEeCCeEEEEEcC-------CceeeEEecCCCCCeEEEEEc
Q 001362          783 YQPRHGPQFMVNDTTDS--NS-QEAVPCFALSKNDAYLFSASGGVISLYIVM-------TFKTILTIMPPSPTATSLAFN  852 (1092)
Q Consensus       783 w~~~~g~~~~~~~l~~~--~~-~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~s  852 (1092)
                      |+...--.....-+...  .+ ...+...+-+.-..+...+.+-.+|+-|.-       +...+..+......|+++.+.
T Consensus       294 wn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlq  373 (404)
T KOG1409|consen  294 WNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQ  373 (404)
T ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhh
Confidence            33221100000000000  01 112222222222222222323334444421       112233443344679999998


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCC
Q 001362          853 PHDNNVIAIGMDDSTILIYNARS  875 (1092)
Q Consensus       853 ~~d~~~lasg~~dg~v~iwd~~~  875 (1092)
                      . .-.+|+|++.|..|+|||+..
T Consensus       374 e-tlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  374 E-TLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             h-hccceeecCCceEEEEEechh
Confidence            8 677999999999999999874

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.23  E-value=1.8e-09  Score=115.74  Aligned_cols=194  Identities=12%  Similarity=0.179  Sum_probs=155.3

Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEe------c------------CCCcEEEEEEeCCCc
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------A------------PCKQISVITCGDDKT  466 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s------~------------d~~~l~l~s~~~d~~  466 (1092)
                      .|.+.|+|....||.++||+...++....+.....-++..++..|.      |            .+.+..++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            3567899999999999999999987554332222233444455552      1            123347888999999


Q ss_pred             EEEEECCCCceeEEEe--cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001362          467 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL  544 (1092)
Q Consensus       467 i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  544 (1092)
                      |.+|+...|+....+.  .|.+.|+++.++.  +-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL  159 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence            9999999999988885  6899999988743  44689999999999999999988888888888899999999999999


Q ss_pred             EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC-----CCEEEEE-eCCCcEEEEECCC
Q 001362          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILAA-GDDHVIKIWDMNK  609 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~l~~~-s~dg~i~iwd~~~  609 (1092)
                      ++++.      .|.+||+++++.+..|.||.   ++|.++.|..+     |.+++++ ..+..+.+|-+..
T Consensus       160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            98853      59999999999999999999   99999999877     7777764 4556677886554

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.18  E-value=3.4e-09  Score=113.80  Aligned_cols=188  Identities=15%  Similarity=0.231  Sum_probs=148.0

Q ss_pred             cCCCEEEEEe-CCeEEEEEcCCceeeEEecCC---CCCeEEEEE------cC-------------CCCCEEEEEeCCCcE
Q 001362          812 KNDAYLFSAS-GGVISLYIVMTFKTILTIMPP---SPTATSLAF------NP-------------HDNNVIAIGMDDSTI  868 (1092)
Q Consensus       812 ~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~------s~-------------~d~~~lasg~~dg~v  868 (1092)
                      |...++|... ||.+++|+...++....+.+.   .+..++..|      +|             .|...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4456777775 799999999999887777542   223333333      11             155688889999999


Q ss_pred             EEEEcCCceeeEeec--cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEec
Q 001362          869 LIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK  946 (1092)
Q Consensus       869 ~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  946 (1092)
                      .+|+...|+....+.  .|.++|.++.++.+-..|-|++.|+.+..|+.....     .+........   .+.+++.+|
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~  154 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP  154 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence            999999999888886  499999999999999999999999999999999844     3333333333   588999999


Q ss_pred             CCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecC-----CCEEEEE-ECCCcEEEEEcCC
Q 001362          947 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-----CRMVFTS-FVDGTLSIHEASN 1009 (1092)
Q Consensus       947 dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~d-----g~~l~t~-~~Dg~i~vwd~~~ 1009 (1092)
                      ||..++++ .++|++||+++++.+.. +.||.++|.++.|-.+     |.+++++ ..+..+.+|-+..
T Consensus       155 D~~~l~~a-s~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  155 DGKILLTA-SRQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCEEEec-cceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            99988874 46899999999999987 7899999999999887     6776654 3556688887765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.17  E-value=3.4e-08  Score=111.34  Aligned_cols=183  Identities=13%  Similarity=0.062  Sum_probs=111.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001362          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  536 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~  536 (1092)
                      .++.++.++.|..+|..+|+.+..............    -++..++.++.+|.+..+|..+++................
T Consensus        67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~  142 (377)
T TIGR03300        67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL  142 (377)
T ss_pred             EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence            577788899999999999999877654433222222    2446788889999999999998888776554332111111


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001362          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v-----~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~  611 (1092)
                      +  .+..++.+..    ++.++.||..+|+.+-.+....   ...     ......  +..++.+..++.+..+|.++|+
T Consensus       143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~---~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~  211 (377)
T TIGR03300       143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVT---PALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ  211 (377)
T ss_pred             E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCC---CceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence            2  2345555543    5679999999999877665432   111     111111  2467888889999999999998


Q ss_pred             eEEEEeCCCCC--CCC---ceEEEcc--CCCEEEEEeCCCeEEEEECCCC
Q 001362          612 LLTTIDAGGGL--PEN---PRICFNK--NGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       612 ~~~~~~~~~~~--~~v---~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      .+.........  ..+   ..+.-+|  .+..+.+++.+|.+..||..++
T Consensus       212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG  261 (377)
T TIGR03300       212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG  261 (377)
T ss_pred             EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence            77654322110  000   0000011  2445556666666666666544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.16  E-value=1e-07  Score=107.49  Aligned_cols=210  Identities=9%  Similarity=0.060  Sum_probs=125.7

Q ss_pred             eCCeEEEEEcCCceeeEEecCCCCCe-----EEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccC----C---
Q 001362          821 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----R---  888 (1092)
Q Consensus       821 sdg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~----~---  888 (1092)
                      .++.+..||.++|+.+..+.......     .+..+.  + ..++.+..+|.+..+|..+|+.+........    .   
T Consensus       153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~  229 (377)
T TIGR03300       153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER  229 (377)
T ss_pred             CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence            35677777777777666554322211     111222  3 3677788899999999999987755431100    0   


Q ss_pred             eEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcC
Q 001362          889 VTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAE  965 (1092)
Q Consensus       889 V~~l~~sp--dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~  965 (1092)
                      +..+.-+|  .+..+..++.+|.+..||..+++..-...   ...       ....+  .++..+.+ ..++.+..+|..
T Consensus       230 ~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~---~~~-------~~~p~--~~~~~vyv~~~~G~l~~~d~~  297 (377)
T TIGR03300       230 LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD---ASS-------YQGPA--VDDNRLYVTDADGVVVALDRR  297 (377)
T ss_pred             hhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec---cCC-------ccCce--EeCCEEEEECCCCeEEEEECC
Confidence            00010011  35577778889999999999886432111   111       11122  23444544 678999999999


Q ss_pred             CceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCE
Q 001362          966 ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ 1045 (1092)
Q Consensus       966 ~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~ 1045 (1092)
                      +|+.+............+...  .+..|++++.+|.|+++|..+|+.+.++....        ..+... -++.   ++.
T Consensus       298 tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~--------~~~~~s-p~~~---~~~  363 (377)
T TIGR03300       298 SGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG--------SGIASP-PVVV---GDG  363 (377)
T ss_pred             CCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CccccC-CEEE---CCE
Confidence            998775431111112222222  46688899999999999999999998776222        111110 1122   356


Q ss_pred             EEEEeCCCcEEEEe
Q 001362         1046 FAVGLTNGEVYVIE 1059 (1092)
Q Consensus      1046 l~~~~~dg~v~~w~ 1059 (1092)
                      |++++.||.|+.|.
T Consensus       364 l~v~~~dG~l~~~~  377 (377)
T TIGR03300       364 LLVQTRDGDLYAFR  377 (377)
T ss_pred             EEEEeCCceEEEeC
Confidence            88999999998763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.05  E-value=1.5e-08  Score=98.99  Aligned_cols=251  Identities=15%  Similarity=0.106  Sum_probs=160.9

Q ss_pred             CceEEeec---CCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC---cEEEEEECCCCC
Q 001362          336 SPMSMDFH---PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGS  409 (1092)
Q Consensus       336 ~V~~v~~s---pdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~  409 (1092)
                      .+..+.|.   .+|...++-+..+|.|.++.....+.....           ++     +..-.-   .-.++.|++.|.
T Consensus        71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L-----------~~-----ls~~ki~~~~~lslD~~~~~~  134 (339)
T KOG0280|consen   71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL-----------RG-----LSSKKISVVEALSLDISTSGT  134 (339)
T ss_pred             ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee-----------cc-----cchhhhhheeeeEEEeeccCc
Confidence            56666664   344445666677788888876543322210           00     111111   234678999999


Q ss_pred             EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC-CCceeEE-EecCCcC
Q 001362          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYS-FEGHGAP  487 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~~~~~-~~~~~~~  487 (1092)
                      .++++..+|.+.+-+..... +....++++|....+-+.|+..... ++.+||.|+.+..||++ .++.+.. .+.|...
T Consensus       135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G  212 (339)
T KOG0280|consen  135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG  212 (339)
T ss_pred             eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence            99999999988855544332 3333468899999999999987665 79999999999999998 4455543 5678888


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC--CEEEEEecCCCCceeEEEEeCCC-
Q 001362          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESE-  564 (1092)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~~~~~~~~i~iwd~~~-  564 (1092)
                      |.++.-++. .+.++++|+.|-.|++||.++......-....+.|..+..+|.-  +.|++|--++     ..+.+.+. 
T Consensus       213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~  286 (339)
T KOG0280|consen  213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDK  286 (339)
T ss_pred             eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEeccc
Confidence            998876653 66899999999999999999766665555566889999998853  3444443222     33444332 


Q ss_pred             -CeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEE-EEECCCC
Q 001362          565 -GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNKV  610 (1092)
Q Consensus       565 -~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~-iwd~~~~  610 (1092)
                       .+....+..+..|..-.+.-.|......+++++ .|+.++ +|-..++
T Consensus       287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             ccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence             221122233332225555555544445577755 556544 6654443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=5.6e-08  Score=108.84  Aligned_cols=205  Identities=14%  Similarity=0.029  Sum_probs=129.6

Q ss_pred             eeecccCCCCceEEeecCCCceEEEEEcC---CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~---d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      .+.+.... .+....|||||+++++..+.   +..|.++|+.+|+...                    +....+.+...+
T Consensus       181 ~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~  239 (419)
T PRK04043        181 QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSD  239 (419)
T ss_pred             eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeE
Confidence            34343333 77889999999864443333   3569999999887654                    223445667788


Q ss_pred             ECCCCCEEEEEeC---CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCcee
Q 001362          404 WSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRT  478 (1092)
Q Consensus       404 ~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~  478 (1092)
                      |||||+.|+....   +..|.++|+.+++. +   .+..+........|+|||+.+++++ ...+  .|.+.|+.+++..
T Consensus       240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy~~dl~~g~~~  314 (419)
T PRK04043        240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIFMKKLNSGSVE  314 (419)
T ss_pred             ECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCceEEEEECCCCCeE
Confidence            9999998876532   35688888887752 2   2333443344568999999744443 2233  6888898888764


Q ss_pred             EEEecCCcCeEEEeecccCCccEEEEEecC---------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001362          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      +.... ...  ...|  ++||+.|+..+..         ..|.+.|++++.... +... .......|+|||+.++....
T Consensus       315 rlt~~-g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        315 QVVFH-GKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             eCccC-CCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEc
Confidence            43321 111  1255  5577777766543         257777877765433 3222 23335889999999988765


Q ss_pred             CCCCceeEEEEeCCCC
Q 001362          550 SKEGESFLVEWNESEG  565 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~  565 (1092)
                      . .+...+.+.++...
T Consensus       388 ~-~~~~~L~~~~l~g~  402 (419)
T PRK04043        388 L-GNQSALGIIRLNYN  402 (419)
T ss_pred             c-CCcEEEEEEecCCC
Confidence            4 33556778887543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.03  E-value=1.9e-07  Score=116.42  Aligned_cols=260  Identities=12%  Similarity=0.090  Sum_probs=162.1

Q ss_pred             EEEEEecC-CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCE
Q 001362          738 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY  816 (1092)
Q Consensus       738 ~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~  816 (1092)
                      ..++++++ +..+++-..++.|.+|+.........+....      .....|.      +. ...-.....+++.+++..
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~------~G~~dG~------~~-~a~f~~P~GIavd~~gn~  637 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE------EGLRDGS------FE-DATFNRPQGLAYNAKKNL  637 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC------cCCCCCc------hh-ccccCCCcEEEEeCCCCE
Confidence            45788764 5566666667888888754321100000000      0000010      00 012234578999999887


Q ss_pred             EEEEe--CCeEEEEEcCCceeeEEecCC-----------------CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce
Q 001362          817 LFSAS--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  877 (1092)
Q Consensus       817 l~~~s--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  877 (1092)
                      |.++.  .+.|+++|..++. +.++.+.                 -.....++|+|+++.++++.+.++.|++||..++.
T Consensus       638 LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        638 LYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             EEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence            77765  4779999987754 3333210                 11336799999566677777788999999998775


Q ss_pred             eeEeecc---------c------cCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCceeeee--------eeecC---C
Q 001362          878 VISKLEG---------H------SKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCR--------SLQTP---D  930 (1092)
Q Consensus       878 ~~~~l~~---------h------~~~V~~l~~spdg~-~l~s~s~Dg~i~iwd~~~~~~~~~~--------~~~~~---~  930 (1092)
                      .. .+.+         +      -.....++++||++ ++++-+.++.|++||+.++......        .+...   .
T Consensus       717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d  795 (1057)
T PLN02919        717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD  795 (1057)
T ss_pred             EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence            42 1111         1      12356799999998 4555667789999999876532100        00000   0


Q ss_pred             CC--cCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccC------------CCCCEEEEEEecCCCEEEE
Q 001362          931 GV--MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFT  995 (1092)
Q Consensus       931 ~~--~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t  995 (1092)
                      +.  .........++++++|.++++ ..+++|++||..++......-.+            .-.....+++++||+.+++
T Consensus       796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa  875 (1057)
T PLN02919        796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA  875 (1057)
T ss_pred             CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence            00  000113468999999997777 67889999999877655322111            1235778999999999998


Q ss_pred             EECCCcEEEEEcCCCce
Q 001362          996 SFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus       996 ~~~Dg~i~vwd~~~~~~ 1012 (1092)
                      -+.+++|++||+.+++.
T Consensus       876 Dt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        876 DTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ECCCCEEEEEECCCCcc
Confidence            88999999999999876

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=2.6e-09  Score=112.12  Aligned_cols=244  Identities=14%  Similarity=0.220  Sum_probs=169.5

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC-Cccc---ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~---~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  467 (1092)
                      +.||+..|..++--.+.+-+++++.|++|++|.+... ..+.   ...++..|+.+|.++.|..|-+  .++++  ||-|
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~gi  806 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGGI  806 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCcc
Confidence            7899999999988888889999999999999998742 2222   4457789999999999999988  56665  8899


Q ss_pred             EEEECCCCceeEEEec--CCcCeEEEeecccCCccEEEEE-ecCCeEEEEEcCCCCceEEec-----CCCCceEEEEEcc
Q 001362          468 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYD-----APGLGCTRMAYSA  539 (1092)
Q Consensus       468 ~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~-----~~~~~i~~~~~s~  539 (1092)
                      .+||.--|+.+..+..  ..+.+..+...++-+..+++.| +...+|+++|.+..+-...+.     ++..-+.+++..+
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD  886 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence            9999988887754421  1122222332234355566665 788999999998877554443     3445688999999


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEE-EECCCCceEEEEeC
Q 001362          540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI-WDMNKVQLLTTIDA  618 (1092)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~i-wd~~~~~~~~~~~~  618 (1092)
                      .|+.++++-.    +++|.+.|.++|+.+.......   -....++ .|..+.++....|.++.+ |..-+|....+...
T Consensus       887 ~GN~lAa~LS----nGci~~LDaR~G~vINswrpme---cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp  958 (1034)
T KOG4190|consen  887 KGNKLAAALS----NGCIAILDARNGKVINSWRPME---CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP  958 (1034)
T ss_pred             CcchhhHHhc----CCcEEEEecCCCceeccCCccc---chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence            9999998765    6679999999999887665443   2222222 345566777778888888 98877766555442


Q ss_pred             CCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001362          619 GGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      +..    ..--...-|.-++++.....+.+|.-
T Consensus       959 ppe----pahflqsvgpSLV~a~~Gn~lgVYad  987 (1034)
T KOG4190|consen  959 PPE----PAHFLQSVGPSLVTAQNGNILGVYAD  987 (1034)
T ss_pred             CCc----chhhhhccCceeEEeccCcEEEEEec
Confidence            211    00011123556677766667777753

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.97  E-value=3.1e-07  Score=114.50  Aligned_cols=255  Identities=12%  Similarity=0.097  Sum_probs=158.9

Q ss_pred             eEEEEecCCCEEEEE-e-CCeEEEEEcCCceeeEEecC--C------------CCCeEEEEEcCCCCCEEEEEe-CCCcE
Q 001362          806 PCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILTIMP--P------------SPTATSLAFNPHDNNVIAIGM-DDSTI  868 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~-s-dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~d~~~lasg~-~dg~v  868 (1092)
                      ..+++++++..+.++ . .+.|+++|.. +..+..+.+  .            -.....+++++ ++..|+++. ..+.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence            467888764444444 3 5889999986 444444332  1            12357899998 666555554 45789


Q ss_pred             EEEEcCCceeeEeeccc-----------------cCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeee---ee
Q 001362          869 LIYNARSSEVISKLEGH-----------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ  927 (1092)
Q Consensus       869 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~  927 (1092)
                      +++|..++.. .++.+-                 -.....++|+| ++.++++.+.++.|++||..++......-   ..
T Consensus       649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            9999887653 333210                 12346799999 56677777888999999998765322100   00


Q ss_pred             cCCCCc---CCCCCceEEEEecCCCEEEE--EeCCcEEEEEcCCceeeeee------------ccC--------CCCCEE
Q 001362          928 TPDGVM---TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQW------------FPI--------SSVPIS  982 (1092)
Q Consensus       928 ~~~~~~---~~~~~v~~l~~s~dg~~la~--~~d~~i~lwd~~~~~~~~~~------------~~~--------h~~~v~  982 (1092)
                      ...+..   ........++|+|+|+.|.+  ..++.|++||+.++......            +..        .-....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence            000100   00124678999999986655  46689999999876532110            000        011346


Q ss_pred             EEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccc-cCCCC--ccCcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001362          983 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-LRPTT--SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus       983 ~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~-~~~~~--~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
                      .++|++||..+++-+.+++|++||..++........... ...+.  ...--.|..++++| +++.+++-+.++.|++||
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence            889999999888888899999999998876543321100 00000  00011456788988 578888888999999999


Q ss_pred             CCCCC
Q 001362         1060 PNEPG 1064 (1092)
Q Consensus      1060 ~~~~~ 1064 (1092)
                      +....
T Consensus       887 ~~~~~  891 (1057)
T PLN02919        887 LNKGE  891 (1057)
T ss_pred             CCCCc
Confidence            96543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.96  E-value=1.1e-07  Score=92.96  Aligned_cols=198  Identities=15%  Similarity=0.117  Sum_probs=135.3

Q ss_pred             eeEEEEecCCCEEEEEe-CCeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcC-CceeeE
Q 001362          805 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVIS  880 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~~  880 (1092)
                      ..++.|++.+..+++.. +|.+.+-+......  ++..++|.-++..+.|+..+.+++.+|+.|+.+..||++ .++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            45778888888887775 58888666554443  447889999999999998788899999999999999998 344444


Q ss_pred             e-eccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC--EEEEEeC
Q 001362          881 K-LEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT--RFLLVHE  956 (1092)
Q Consensus       881 ~-l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~--~la~~~d  956 (1092)
                      . .+-|...|.++.-+| ++.+++||+.|..|++||...-.    +++.    .....+.|..+..+|.-.  +|+++.-
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~----kPl~----~~~v~GGVWRi~~~p~~~~~lL~~CMh  275 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG----KPLF----KAKVGGGVWRIKHHPEIFHRLLAACMH  275 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc----Cccc----cCccccceEEEEecchhhhHHHHHHHh
Confidence            4 456899999998886 57899999999999999998521    1111    111125799999998643  4444444


Q ss_pred             CcEEEEEcCCcee----eeeeccCCCCCEEEEEEecCCCEEEEEE-CCCcEE-EEEcCCC
Q 001362          957 THLAIYEAEELTC----LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLS-IHEASNL 1010 (1092)
Q Consensus       957 ~~i~lwd~~~~~~----~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~Dg~i~-vwd~~~~ 1010 (1092)
                      +..+|-+...+..    .......|.+-...-.|..-..+|+|++ .|+.++ +|-..++
T Consensus       276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            4455555543321    2222344555555555544345788866 577655 7765554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.96  E-value=2.9e-08  Score=109.86  Aligned_cols=505  Identities=12%  Similarity=0.111  Sum_probs=260.3

Q ss_pred             eEEeecCCCceEEEEEcC----CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001362          338 MSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       338 ~~v~~spdg~~llasg~~----d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      +-..|+|... ++|+++.    .|+|.||- ++|++-+..+++                    -.+++++|+|..-.||+
T Consensus        19 ti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P--------------------~hatSLCWHpe~~vLa~   76 (1416)
T KOG3617|consen   19 TISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTYP--------------------VHATSLCWHPEEFVLAQ   76 (1416)
T ss_pred             cccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccccc--------------------eehhhhccChHHHHHhh
Confidence            4457888887 6787764    47888885 567655432221                    23566999999999999


Q ss_pred             EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE--EecC--CcCeE
Q 001362          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--FEGH--GAPVY  489 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~--~~~~--~~~v~  489 (1092)
                      |..-|.+.+|...+.+.-.   ....|..+|.-+.||++|.  .++|+..-|.|.+|....-..++.  +-.|  ...++
T Consensus        77 gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~lt  151 (1416)
T KOG3617|consen   77 GWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLT  151 (1416)
T ss_pred             ccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhceee
Confidence            9999999999988754222   3446999999999999999  899999999999998763222221  1122  23344


Q ss_pred             EEeecccCCcc------EEEEEecCCeEE-EEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001362          490 SLCPHAKENIH------FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       490 ~~~~~~~~~~~------~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      -++|.-+.++.      ..+..+.+..+- .+++..........        -.-.|+|..++.++.    +++|+..|-
T Consensus       152 l~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--------ksgv~~g~~F~~~~~----~GtVyyvdq  219 (1416)
T KOG3617|consen  152 LWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--------KSGVPKGTEFLFAGK----SGTVYYVDQ  219 (1416)
T ss_pred             EEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--------ccCCCCCcEEEEEcC----CceEEEEcC
Confidence            45554333321      122233333222 33332111100000        112367777777765    556777763


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CC---------------ce--------------
Q 001362          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN-KV---------------QL--------------  612 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~-~~---------------~~--------------  612 (1092)
                       .|..........    . ..+-|.+...-+++.-.+-.+.++-.. +|               ..              
T Consensus       220 -~g~~~~V~k~dS----~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr  293 (1416)
T KOG3617|consen  220 -NGRQRTVHKLDS----E-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLR  293 (1416)
T ss_pred             -CCcEEEEEEccc----h-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccccc
Confidence             344333332211    1 111222222222222222222222110 10               00              


Q ss_pred             -EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCce----------eeecccccCceeeeeecCCCccccc
Q 001362          613 -LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS----------VDAAGVLSDNLRKLSVNPISTVTGA  681 (1092)
Q Consensus       613 -~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~~  681 (1092)
                       ...+... ....+.+++++..+..++.|...|.+.+|.-.....          +...+...+.|..+.|+|..+.+++
T Consensus       294 ~~eKyg~e-~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~av  372 (1416)
T KOG3617|consen  294 KSEKYGLE-LGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAV  372 (1416)
T ss_pred             CCcchhhh-cCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhh
Confidence             0000011 123588999999999999999999999996543311          1222233445555666654444433


Q ss_pred             cccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEE
Q 001362          682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW  761 (1092)
Q Consensus       682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw  761 (1092)
                      .+....+.+....      + +                           ..|.....++.-+.++-.|..+.        
T Consensus       373 n~~~~v~ll~E~~------l-~---------------------------~~h~~~~~A~q~ss~S~~L~hc~--------  410 (1416)
T KOG3617|consen  373 NTEEDVVLLGENS------L-T---------------------------VKHRGKMAAIQTSSNSFTLLHCT--------  410 (1416)
T ss_pred             hhhhheeeeccCc------h-H---------------------------HHHhhhhHHhhhcCCceEEEeec--------
Confidence            2222211110000      0 0                           00111111111111111111110        


Q ss_pred             eecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEE--e
Q 001362          762 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT--I  839 (1092)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~--~  839 (1092)
                                               +|... .  +   ...-++..++.+.  ..++...+.+|..|++.+......  .
T Consensus       411 -------------------------sGv~~-~--l---~~~~~~~gi~l~e--~~lvvwNgr~v~~y~lq~SG~la~~~~  457 (1416)
T KOG3617|consen  411 -------------------------SGVSQ-D--L---KLSIPSAGICLGE--KQLVVWNGRTVVTYDLQTSGSLATIQC  457 (1416)
T ss_pred             -------------------------cchhh-h--h---hhccchhhheecc--ceEEEEcCceEEEEEecccchhHHHhh
Confidence                                     11000 0  0   0122333444433  456666678889999864321111  1


Q ss_pred             cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee--ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001362          840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l--~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      .......+++++..  .++...++.+  |.++.+. |.+.+.+  ..-.+.|.-+.+  .|.+++.....+.++-+|+..
T Consensus       458 ~tF~cet~~la~~n--qN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi--~g~~l~v~t~~~~~k~~dvsr  530 (1416)
T KOG3617|consen  458 TTFSCETTSLAIVN--QNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDI--MGELLIVQTVSTVAKRLDVSR  530 (1416)
T ss_pred             hhhccccchHhHhh--cceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhh--ccceeEEeehHHHHHHhhhhh
Confidence            11223344555553  4455555544  5555544 3333322  223444544555  378999888888888888887


Q ss_pred             CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE---EeC----CcEEEEEcCCceee
Q 001362          918 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL---VHE----THLAIYEAEELTCL  970 (1092)
Q Consensus       918 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~---~~d----~~i~lwd~~~~~~~  970 (1092)
                      .+...........+.....+.+..+..+..|..+.+   ..+    .++..||.++++..
T Consensus       531 ~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~  590 (1416)
T KOG3617|consen  531 AELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQ  590 (1416)
T ss_pred             hcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHH
Confidence            665544444444444444456778888777766544   222    47999999877643

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.95  E-value=0.00029  Score=81.33  Aligned_cols=619  Identities=11%  Similarity=0.068  Sum_probs=299.8

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-C---
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-D---  407 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-d---  407 (1092)
                      |..+-..|+.+-++|  +|.+||.-|.=.+-.+.+......+.          ..++.  + ..-++|..++.-. |   
T Consensus       304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~----------~ilet--~-~NLgPI~Dm~Vvd~d~q~  368 (1096)
T KOG1897|consen  304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYV----------VILET--F-VNLGPIVDMCVVDLDRQG  368 (1096)
T ss_pred             CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchh----------hhhhh--c-ccccceeeEEEEeccccC
Confidence            444456677777888  57888887665666655432221100          00000  0 1224676666543 2   


Q ss_pred             CCEEEEEe---CCCEEEEEEccCCCcccceEEEcccccceeEEE--EecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001362          408 GSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       408 g~~las~~---~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      +..+++|+   .||+++|..-.-+-.......+.| -..++.+.  +.+.-...++++-. + .-++..+...-......
T Consensus       369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~-~-eTrvl~i~~e~ee~~~~  445 (1096)
T KOG1897|consen  369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI-S-ETRVLNISEEVEETEDP  445 (1096)
T ss_pred             CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec-c-ceEEEEEccceEEeccc
Confidence            34566653   578899887654422222224455 33466666  44332221333322 2 23344433221111122


Q ss_pred             cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001362          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      +.......+..+.- +++.|+-.. ...||+++-.  .....+.... .++....+.+...++.++.    ...+...++
T Consensus       446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~----~~~l~y~~i  516 (1096)
T KOG1897|consen  446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGG----GLALFYLEI  516 (1096)
T ss_pred             cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecC----ccEEEEEEe
Confidence            22222333332221 122222221 1235555432  2222333333 3333344445555555543    233555555


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCC------CEEEEEeCCCcEEEE-ECCCCceEEEEeCCC--CCCCCceEEEccC
Q 001362          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAK------DQILAAGDDHVIKIW-DMNKVQLLTTIDAGG--GLPENPRICFNKN  633 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~------~~l~~~s~dg~i~iw-d~~~~~~~~~~~~~~--~~~~v~~v~~s~~  633 (1092)
                      ..+.+....+..  -...|.|+.++|-+      ++++.|..+..+.+. -..+...+.......  -...|...+|-.|
T Consensus       517 ~~~~l~e~~~~~--~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d  594 (1096)
T KOG1897|consen  517 EDGGLREVSHKE--FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD  594 (1096)
T ss_pred             eccceeeeeehe--ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence            555422222211  24678999998752      256777765554443 333444433332221  1122444555567


Q ss_pred             CCEEEEEeCCCeEEEEECC--CCceeeecc--cccCceeeeee----------cCCCccccccccCCceeecCCC-----
Q 001362          634 GTLLAVIANENRIKILETP--ESNSVDAAG--VLSDNLRKLSV----------NPISTVTGAGIANGSVSVNEDP-----  694 (1092)
Q Consensus       634 ~~~l~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~v~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-----  694 (1092)
                      ..+|.++..||.+.-+.+.  ++..-...+  -...++.--.|          ..+.+.+. =..++...|.+-.     
T Consensus       595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~vi-Y~~n~kLv~spls~kev~  673 (1096)
T KOG1897|consen  595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVI-YSSNGKLVYSPLSLKEVN  673 (1096)
T ss_pred             ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEE-EecCCcEEEeccchHHhh
Confidence            8899999999998876554  332111110  01111111111          11111111 1111111111000     


Q ss_pred             ------CCC-CccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCC
Q 001362          695 ------KED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND  767 (1092)
Q Consensus       695 ------s~d-~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~  767 (1092)
                            ++. +..++++. .+.+++..++.-.....+.+  |   -......+++.+....+.+.+.......=      
T Consensus       674 ~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtv--p---l~~~prrI~~q~~sl~~~v~s~r~e~~~~------  741 (1096)
T KOG1897|consen  674 HMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTV--P---LGESPRRICYQESSLTFGVLSNRIESSAE------  741 (1096)
T ss_pred             hhcccccccCCceEEEec-CCceEEEEecchhhcceeee--c---CCCChhheEecccceEEEEEecccccchh------
Confidence                  111 12222222 24455554442222222221  1   22334455666534333333322111100      


Q ss_pred             cCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC-CCEEEEEe-----------CCeEEEEEcCCcee
Q 001362          768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----------GGVISLYIVMTFKT  835 (1092)
Q Consensus       768 ~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~d-g~~l~~~s-----------dg~i~iwd~~~~~~  835 (1092)
                        ..+.......++++|..+-..+...++...+....+.++.|..| +.++++|.           .|.|.++....++.
T Consensus       742 --~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~  819 (1096)
T KOG1897|consen  742 --YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS  819 (1096)
T ss_pred             --hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence              00111122345666666655454444433233344555568877 77888773           26788998877444


Q ss_pred             eEEecCC--CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001362          836 ILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW  913 (1092)
Q Consensus       836 ~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iw  913 (1092)
                      ++....+  .+.+.++..-  +|++||  +-...|++|+..+.+.+..-..|..++..+...-.|..++.|.--+.+.+-
T Consensus       820 L~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll  895 (1096)
T KOG1897|consen  820 LELVAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL  895 (1096)
T ss_pred             eeeeeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence            4443322  2344444332  577776  345689999999987777777899999999999999999999988888877


Q ss_pred             EcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCc-------------------eeeeeec
Q 001362          914 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL-------------------TCLKQWF  974 (1092)
Q Consensus       914 d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~-------------------~~~~~~~  974 (1092)
                      .....+.......+...+     .+++++.+-.+..++.+-.+|.+++-..++.                   +.+..+ 
T Consensus       896 ~y~~~eg~f~evArD~~p-----~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f-  969 (1096)
T KOG1897|consen  896 QYKGDEGNFEEVARDYNP-----NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKF-  969 (1096)
T ss_pred             EEeccCCceEEeehhhCc-----cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeee-
Confidence            666544222112222211     3788999999988888877777666644321                   111111 


Q ss_pred             cCCCCCEEE--EEEecCCCEEEEEECCCcEEEE
Q 001362          975 PISSVPISQ--ATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus       975 ~~h~~~v~~--l~fs~dg~~l~t~~~Dg~i~vw 1005 (1092)
                       .|..-|..  -..+|-+..+..|+.+|+|-+-
T Consensus       970 -~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen  970 -RHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred             -eecceEeeccccccCCCCcEEEEEccceEEEE
Confidence             13333433  1223444457778889988764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.94  E-value=3.7e-07  Score=90.10  Aligned_cols=208  Identities=18%  Similarity=0.139  Sum_probs=139.3

Q ss_pred             EEEecCCCEEEEEeCCeEEEEEcCCc--eeeEE---ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee
Q 001362          808 FALSKNDAYLFSASGGVISLYIVMTF--KTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  882 (1092)
Q Consensus       808 ~~~s~dg~~l~~~sdg~i~iwd~~~~--~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l  882 (1092)
                      ++.++||++||+.-|..|.|-..++.  ..+.+   .+.....=+.++||| |+.+||.+...|+|++||+....+ ..+
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI   80 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence            67889999999999998888776542  12222   222334558899999 999999999999999999986443 333


Q ss_pred             cc-------ccCCeEEEEEcCCC------CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC
Q 001362          883 EG-------HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1092)
Q Consensus       883 ~~-------h~~~V~~l~~spdg------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  949 (1092)
                      ..       -...|..|.|.+-.      ..|.....+|.++=|-+..+..........+.-.......|.++.+.|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            22       23467777775432      246666788888877764332111111111111111124799999999999


Q ss_pred             EEEEEe-----C-------CcEEEEEcCCceeeee--------------------ec--------cCCCCCEEEEEEecC
Q 001362          950 RFLLVH-----E-------THLAIYEAEELTCLKQ--------------------WF--------PISSVPISQATFSCD  989 (1092)
Q Consensus       950 ~la~~~-----d-------~~i~lwd~~~~~~~~~--------------------~~--------~~h~~~v~~l~fs~d  989 (1092)
                      +|+++.     +       --+.-|.+-++.+-..                    +.        ......|..|..|||
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd  240 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD  240 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence            988841     1       1366676543321100                    00        113678899999999


Q ss_pred             CCEEEEEECCCcEEEEEcCCCceEEeec
Q 001362          990 CRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       990 g~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      |+.||+...+|.|.+|++.+.++...+.
T Consensus       241 g~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  241 GSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             CCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            9999999999999999999999988776

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.94  E-value=5.2e-09  Score=109.94  Aligned_cols=295  Identities=9%  Similarity=0.105  Sum_probs=187.0

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCC-CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      -.+..+.||+..|..++--.+.+ -+++++.|++|++|.+... ..+.+        ..|..+     +..|+.+|..+.
T Consensus       726 irL~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~t--------saCQfT-----Y~aHkk~i~~ig  791 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGT--------SACQFT-----YQAHKKPIHDIG  791 (1034)
T ss_pred             eeeecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCcccc--------ceeeeE-----hhhccCccccee
Confidence            34567789999999998776666 3789999999999998752 22221        122222     556999999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC-CCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001362          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      |-.|-++++++  ||-|++||.--|+.+.+...-..| +.+..+..-++ .+.++++.|+...+|+++|.+.++....++
T Consensus       792 fL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k  868 (1034)
T KOG4190|consen  792 FLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK  868 (1034)
T ss_pred             eeeccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEE
Confidence            99999999876  677999999887766543222222 23333333343 344355556889999999999988776664


Q ss_pred             c-----CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001362          483 G-----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       483 ~-----~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                      .     ...-+.+++..+  .|..++.+-.+|.|.+.|.+++..+..+.........++ .|..+.++....    +..+
T Consensus       869 Vcna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHsl  941 (1034)
T KOG4190|consen  869 VCNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHSL  941 (1034)
T ss_pred             eccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----ccee
Confidence            3     345577888754  557899999999999999998887666555443333333 244455554433    4446


Q ss_pred             EE-EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceEEEEeCCCCCCCCceEEEcc
Q 001362          558 VE-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       558 ~i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      .+ |....|......+...   .+..  ....-|..++++.....+.+|--..    ...+..+....-....++++.-|
T Consensus       942 aVnWhaldgimh~q~kppp---epah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LP 1016 (1034)
T KOG4190|consen  942 AVNWHALDGIMHLQDKPPP---EPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLP 1016 (1034)
T ss_pred             EeeehhcCCeeeeccCCCC---cchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecc
Confidence            66 8766665544433222   1111  1112355677777667777774221    12222332222223356677777


Q ss_pred             CCCEEEEEeCCCeEEE
Q 001362          633 NGTLLAVIANENRIKI  648 (1092)
Q Consensus       633 ~~~~l~~~~~dg~i~i  648 (1092)
                      -..-+..|...|.|.+
T Consensus      1017 LN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1017 LNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             ccchhhccCCCCceee
Confidence            6666677777787765

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.93  E-value=4e-09  Score=125.87  Aligned_cols=201  Identities=15%  Similarity=0.256  Sum_probs=160.2

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +..|-..|.++.=+|...+.++|+.||.|++|.+..+..+....+. |. ..|+.+.|+.+|.  .+..+..||.+.+|.
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence            3346678889999999999999999999999999998877655443 33 8899999999999  688888899999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEe---cCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEE
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      +. .+.....+.|......+.|..    ..+++++   .++.+.+||...... -.....|.+.++++++.|..+.+++|
T Consensus      2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred             cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence            65 666777788888888887754    3455553   567899998654332 22337788899999999999999999


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001362          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  618 (1092)
                      +.    +|.|++||++..++++.++.            +. ...++++|+..|.++||++.....+.++..
T Consensus      2355 gr----~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GR----KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             CC----cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence            87    45599999988877665543            33 457899999999999999998887777654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.89  E-value=6.4e-09  Score=124.19  Aligned_cols=199  Identities=11%  Similarity=0.173  Sum_probs=152.7

Q ss_pred             CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 001362          842 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI  920 (1092)
Q Consensus       842 ~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~  920 (1092)
                      +-..|.++.-+| ...+.++|+.||.|++|....++.+..++. -...|+.+.|+.+|+.+..+..||.+.+|....   
T Consensus      2207 ~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--- 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--- 2282 (2439)
T ss_pred             ccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC---
Confidence            446778888888 677899999999999999998887766652 338899999999999999999999999999984   


Q ss_pred             eeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-E---eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEE
Q 001362          921 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V---HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS  996 (1092)
Q Consensus       921 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~---~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~  996 (1092)
                         +.......|..   ....+.|-.  ..+++ +   .++.+.+||.--.....-+...|.+.++++++-|.-+.|++|
T Consensus      2283 ---k~~~s~qchnk---~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2283 ---KPYTSWQCHNK---ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred             ---cceeccccCCc---cccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence               23333333333   455566655  55665 2   456899999753332222236899999999999999999999


Q ss_pred             ECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCccccCCCCCc
Q 001362          997 FVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEI 1075 (1092)
Q Consensus       997 ~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~ 1075 (1092)
                      |.+|.|++||+...+++..+..                   .+  ...+|++|+..|.++||++.+.+  ....-|.+.
T Consensus      2355 gr~G~v~l~D~rqrql~h~~~~-------------------~~--~~~~f~~~ss~g~ikIw~~s~~~--ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA-------------------LD--TREYFVTGSSEGNIKIWRLSEFG--LLHTFPSEH 2410 (2439)
T ss_pred             CCcCcEEEeehHHHHHHHHhhh-------------------hh--hhheeeccCcccceEEEEccccc--hhhcCchhh
Confidence            9999999999999888866661                   22  24799999999999999997654  444455554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.88  E-value=2.9e-06  Score=95.96  Aligned_cols=220  Identities=10%  Similarity=0.058  Sum_probs=127.5

Q ss_pred             CCEEEEEeCCeEEEEEcCCceeeEEecCCCCC-----eEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccC-
Q 001362          814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-  887 (1092)
Q Consensus       814 g~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-  887 (1092)
                      +..++...++.+..+|..+|+.+.........     ..+.+..  ++ .++.++.+|.+..+|..+|+.+........ 
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~  237 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPT  237 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence            33333334677777788777777665432111     0111222  23 566678899999999999987665431100 


Q ss_pred             ------CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcE
Q 001362          888 ------RVTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHL  959 (1092)
Q Consensus       888 ------~V~~l~~sp--dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i  959 (1092)
                            ....+.-+|  .+..+..++.+|.+..+|..+++..-...    .+.      ...+.. .++...+...++.+
T Consensus       238 ~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~~~------~~~~~~-~~~~vy~~~~~g~l  306 (394)
T PRK11138        238 GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----YGS------VNDFAV-DGGRIYLVDQNDRV  306 (394)
T ss_pred             CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----CCC------ccCcEE-ECCEEEEEcCCCeE
Confidence                  011111122  24566677789999999999886432111    111      111221 23444445778999


Q ss_pred             EEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEEC
Q 001362          960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1039 (1092)
Q Consensus       960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1039 (1092)
                      ..+|..+|+.+-...........+...  .+.+|+.++.||.+...|..+|+.+.+.....        ..+.+.-+ ..
T Consensus       307 ~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~--------~~~~s~P~-~~  375 (394)
T PRK11138        307 YALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS--------SGFLSEPV-VA  375 (394)
T ss_pred             EEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CcceeCCE-EE
Confidence            999999987754321111111222222  24567788999999999999999988775311        11111001 11


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCC
Q 001362         1040 PLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1040 p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                         +..|++++.||.|+.++++
T Consensus       376 ---~~~l~v~t~~G~l~~~~~~  394 (394)
T PRK11138        376 ---DDKLLIQARDGTVYAITRP  394 (394)
T ss_pred             ---CCEEEEEeCCceEEEEeCC
Confidence               3589999999999998763

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.87  E-value=3.9e-06  Score=86.01  Aligned_cols=232  Identities=15%  Similarity=0.133  Sum_probs=153.9

Q ss_pred             eEEEEec-CCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCe--EEEEEcCCCCCEEEEEeC-----CCcEEEEEcC-
Q 001362          806 PCFALSK-NDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMD-----DSTILIYNAR-  874 (1092)
Q Consensus       806 ~~~~~s~-dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~~-----dg~v~iwd~~-  874 (1092)
                      -.++.+| ++..++.+.  .....+||..+++....+....+.-  -.-+||+ ||++|++.-.     .|.|-|||.. 
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence            3678888 555666665  3458999999999988877655432  3578999 8999988644     4799999999 


Q ss_pred             CceeeEeeccccCCeEEEEEcCCCCEEEEEeC------------------CCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001362          875 SSEVISKLEGHSKRVTGLVFSDALNILVSSGG------------------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  936 (1092)
Q Consensus       875 ~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~------------------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  936 (1092)
                      +.+.+..+..|.-.-..+.+.|||+.|+.+-.                  +-.+..-|..+|+......+.... +.   
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~-~~---  162 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL-HQ---  162 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc-cc---
Confidence            66888889888777788999999988887621                  223555566666644422221111 11   


Q ss_pred             CCceEEEEecCCCEEEEE-eCC-------cEEEEEcCCceeeeeecc------CCCCCEEEEEEecCCCEEEEEE-CCCc
Q 001362          937 PSETHIQFHKDQTRFLLV-HET-------HLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF-VDGT 1001 (1092)
Q Consensus       937 ~~v~~l~~s~dg~~la~~-~d~-------~i~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~~-~Dg~ 1001 (1092)
                      .++..+++.++|..++.. ..+       -|.+++-.  +.+..+..      .-...+-+|+++++|.++++++ .-++
T Consensus       163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~  240 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR  240 (305)
T ss_pred             cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence            269999999999987763 111       14444433  22221111      1267899999999998876554 6789


Q ss_pred             EEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001362         1002 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus      1002 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
                      +.+||..+|+++.......            .+.++..+  +. |++.+..|.+....
T Consensus       241 ~~~~d~~tg~~~~~~~l~D------------~cGva~~~--~~-f~~ssG~G~~~~~~  283 (305)
T PF07433_consen  241 VAVWDAATGRLLGSVPLPD------------ACGVAPTD--DG-FLVSSGQGQLIRLS  283 (305)
T ss_pred             EEEEECCCCCEeeccccCc------------eeeeeecC--Cc-eEEeCCCccEEEcc
Confidence            9999999999986655211            23455554  23 56665666644333

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.86  E-value=1.9e-08  Score=109.68  Aligned_cols=211  Identities=17%  Similarity=0.277  Sum_probs=146.7

Q ss_pred             EeeecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001362          389 TALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1092)
Q Consensus       389 ~~~l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  467 (1092)
                      ..++.||+..|+.+.|.|. -..||+++.|..+..||+.+..  .....+..-......++|+-...  .+...+..+.|
T Consensus       107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--~p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i  182 (1081)
T KOG0309|consen  107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--RPFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDI  182 (1081)
T ss_pred             EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC--cceeeeecccccCceeeecccCc--chhhhccCCce
Confidence            3458899999999999994 5688999999999999998764  22223334445567789987666  35556667789


Q ss_pred             EEEECCCC-ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCceEEEEEccCCCEEE
Q 001362          468 KVWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       468 ~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      ++||...| .++..+++|...|+.+.|..... ..+.+.+.||+|++||.+........ .....++..-.+.|-|.-.+
T Consensus       183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~  261 (1081)
T KOG0309|consen  183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC  261 (1081)
T ss_pred             EEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence            99999876 56788999999999998864432 36889999999999999866544322 22334666666777555433


Q ss_pred             EEecCCCCceeEEE---------EeCCC-CeEEEEEeeccccCCceEEEEEcCC----------CCEEEEEeCCCcEEEE
Q 001362          546 SCGTSKEGESFLVE---------WNESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIW  605 (1092)
Q Consensus       546 ~~~~~~~~~~~i~i---------wd~~~-~~~~~~~~~~~~~~~~v~~~~~~p~----------~~~l~~~s~dg~i~iw  605 (1092)
                      .--..  |.+.+.+         |+..+ .+.+..|.||.   +.|....|-..          .-+|++-+.|.++++|
T Consensus       262 ~mp~~--G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW  336 (1081)
T KOG0309|consen  262 IMPMV--GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW  336 (1081)
T ss_pred             ecccc--CCeeeeeccccchhhhhccccCCcceeeecCcc---hHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence            32221  1223333         33332 35688899988   66655444322          2368999999999999


Q ss_pred             ECCC
Q 001362          606 DMNK  609 (1092)
Q Consensus       606 d~~~  609 (1092)
                      -+.+
T Consensus       337 pI~~  340 (1081)
T KOG0309|consen  337 PIDS  340 (1081)
T ss_pred             eccH
Confidence            8754

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.86  E-value=3.3e-08  Score=101.30  Aligned_cols=165  Identities=21%  Similarity=0.172  Sum_probs=115.4

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-  414 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-  414 (1092)
                      .++.+..+|.++ ++|++..+....++++......    .+.+|.         ...   ...-+++.|-.+.....++ 
T Consensus        64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~---------~~v---~~~~~ai~~~~~~~sv~v~d  126 (390)
T KOG3914|consen   64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDV---------SCV---PKRPTAISFIREDTSVLVAD  126 (390)
T ss_pred             cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeE---------eec---ccCcceeeeeeccceEEEEe
Confidence            556667788887 7888888777777776554321    111110         001   1223344455555555544 


Q ss_pred             --eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcCeEEE
Q 001362          415 --YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL  491 (1092)
Q Consensus       415 --~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~  491 (1092)
                        +....+.+|....+.+.    .+-||-..+..++|+||++  +++++..|..|+|-....-..+..| -||...|..+
T Consensus       127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i  200 (390)
T KOG3914|consen  127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI  200 (390)
T ss_pred             ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence              44556677776654433    3558999999999999998  8999999999999877766666555 5799999999


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001362          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD  526 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  526 (1092)
                      +..   ++..|++++.|+++++||+.+++....+.
T Consensus       201 sl~---~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  201 SLT---DNYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eec---cCceeeecCCCCcEEEEecccCCcccccc
Confidence            974   34579999999999999999988775443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.85  E-value=0.00062  Score=78.71  Aligned_cols=581  Identities=11%  Similarity=0.108  Sum_probs=289.4

Q ss_pred             EECCCCCEEEEEeCCCEEEEEEcc-CCCcccc---eEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001362          403 VWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQ---QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~-~~~~~~~---~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      ...++|...+.+..+|.+...-+. +++....   ....-+...-..|+...++|   .+..||.-|.=++-.+.+..-.
T Consensus       264 ~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d~  340 (1096)
T KOG1897|consen  264 RVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPDV  340 (1096)
T ss_pred             cccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCCC
Confidence            355678888888888877666555 4443322   11233555667788888887   4778887665555554432211


Q ss_pred             -------EEEecCCcCeEEEeecccC--CccEEEEEe---cCCeEEEEEcCCCCceE---EecCCCCceEEEE-------
Q 001362          479 -------YSFEGHGAPVYSLCPHAKE--NIHFIFSIS---VDGKIKAWLYDSLGARV---DYDAPGLGCTRMA-------  536 (1092)
Q Consensus       479 -------~~~~~~~~~v~~~~~~~~~--~~~~l~s~~---~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~-------  536 (1092)
                             .++. .-+||..++.....  .+..+++++   .||.+|+..-.-+-...   .+.+ -..+..+.       
T Consensus       341 gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~  418 (1096)
T KOG1897|consen  341 GSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENY  418 (1096)
T ss_pred             Cchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccC
Confidence                   2332 34578887765332  334455554   57888887432111111   1111 01122222       


Q ss_pred             ----------------------------EccCCCEEEEEecCCCC-----ceeEEEEeCCCCeEEEEEeeccccCCceEE
Q 001362          537 ----------------------------YSANGRRLFSCGTSKEG-----ESFLVEWNESEGAIKRTYQGLQLQHNSVSV  583 (1092)
Q Consensus       537 ----------------------------~s~dg~~l~~~~~~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  583 (1092)
                                                  |+.+-+.+++....++.     ...|++++-.  ........    .+.++.
T Consensus       419 d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~----p~~~ti  492 (1096)
T KOG1897|consen  419 DNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRP----PGKITI  492 (1096)
T ss_pred             CcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccC----CCceEE
Confidence                                        11122222222211110     0112222221  01111111    123344


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC--C----CEEEEEeCCCeEEEEE-CCCCce
Q 001362          584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--G----TLLAVIANENRIKILE-TPESNS  656 (1092)
Q Consensus       584 ~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~l~~~~~dg~i~iw~-~~~~~~  656 (1092)
                      ...+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|-  +    +++++|..+..+.+.- .++...
T Consensus       493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~  571 (1096)
T KOG1897|consen  493 GVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL  571 (1096)
T ss_pred             EEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence            4444455577777777777777776665 333322233346888888873  2    3788887766555443 333322


Q ss_pred             eeecccccCce-eeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc--CccccccccCCccc
Q 001362          657 VDAAGVLSDNL-RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR--PSECQSLLLPSKVK  733 (1092)
Q Consensus       657 ~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~--~~~~~~~~~~~~~~  733 (1092)
                      +.........+ .++-+.               .+    -.|..++.++..||.+.-|-++...  ........    -.
T Consensus       572 ~~~~~l~~~~iPRSIl~~---------------~~----e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~----lG  628 (1096)
T KOG1897|consen  572 ITHEQLSGEIIPRSILLT---------------TF----EGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVT----LG  628 (1096)
T ss_pred             eeeeccCCCccchheeeE---------------Ee----eccceEEEEEcCCceEEEEEEEcccceEccccccc----cC
Confidence            22211111100 001110               11    2357788889899987766554322  11111111    13


Q ss_pred             cccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec-
Q 001362          734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-  812 (1092)
Q Consensus       734 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~-  812 (1092)
                      ..++.--.|+..++.-+.+.+|.-..+|.....                      .+.....++...|   +  ..|+. 
T Consensus       629 t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k----------------------Lv~spls~kev~~---~--c~f~s~  681 (1096)
T KOG1897|consen  629 TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK----------------------LVYSPLSLKEVNH---M--CPFNSD  681 (1096)
T ss_pred             CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc----------------------EEEeccchHHhhh---h--cccccc
Confidence            344555566666555555555544444432211                      0011111111001   1  11222 


Q ss_pred             -CCCEEEEEeCCeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCC--------------CcEEEEEcCC
Q 001362          813 -NDAYLFSASGGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD--------------STILIYNARS  875 (1092)
Q Consensus       813 -dg~~l~~~sdg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--------------g~v~iwd~~~  875 (1092)
                       -...++++..+.+++.-+..-+.  +++.. -....+.+++.+ ....+++.+.-              ..++++|-++
T Consensus       682 a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT  759 (1096)
T KOG1897|consen  682 AYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT  759 (1096)
T ss_pred             cCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCc
Confidence             23467777777777776654332  23322 223455666665 34444443321              1466777666


Q ss_pred             ceeeEeecc-cc---CCeEEEEEcCC-CCEEEEEeC----------CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001362          876 SEVISKLEG-HS---KRVTGLVFSDA-LNILVSSGG----------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET  940 (1092)
Q Consensus       876 ~~~~~~l~~-h~---~~V~~l~~spd-g~~l~s~s~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  940 (1092)
                      -+.+...+- ..   -.|.++.|..| +.+++.|..          .|.|.|+.+..+..  .+.+....-.    +.+ 
T Consensus       760 f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~--L~~v~e~~v~----Gav-  832 (1096)
T KOG1897|consen  760 FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS--LELVAETVVK----GAV-  832 (1096)
T ss_pred             eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc--eeeeeeeeec----cce-
Confidence            554433221 11   23445568877 677777642          46677777776221  1111111000    112 


Q ss_pred             EEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001362          941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus       941 ~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
                       .+.---+..++++-+..|++|++.+.+.++. ...|..++..+...-.|..+++|.-=+++.+-.....+-........
T Consensus       833 -~aL~~fngkllA~In~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD  910 (1096)
T KOG1897|consen  833 -YALVEFNGKLLAGINQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD  910 (1096)
T ss_pred             -eehhhhCCeEEEecCcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh
Confidence             2222233445556677899999998876665 55678899999999999999999887877766555444211111122


Q ss_pred             ccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001362         1021 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus      1021 ~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
                      +.|.       +..++.+-  +.+.++-+..+|.+.+-.......
T Consensus       911 ~~p~-------Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~~  946 (1096)
T KOG1897|consen  911 YNPN-------WMTAVEIL--DDDTYLGAENSGNLFTVRKDSDAT  946 (1096)
T ss_pred             hCcc-------ceeeEEEe--cCceEEeecccccEEEEEecCCCC
Confidence            2222       22333333  356788888889888877765443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.85  E-value=1.4e-06  Score=97.80  Aligned_cols=212  Identities=9%  Similarity=0.005  Sum_probs=131.0

Q ss_pred             eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC-EEEEEeCC---CcEEEEEcCCceeeEeeccccCCeEEEEEcCCCC
Q 001362          824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN  899 (1092)
Q Consensus       824 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~  899 (1092)
                      .|.+-|..... .+.+... +......|+| |++ .++..+.+   ..|+++|+.+++...... ..+......|||||+
T Consensus       170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~  245 (419)
T PRK04043        170 NIVLADYTLTY-QKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS  245 (419)
T ss_pred             eEEEECCCCCc-eeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence            45555554333 3333333 3677899999 776 36654443   479999998887544333 455566788999998


Q ss_pred             EEEEE-eCC--CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCC----cEEEEEcCCceeeee
Q 001362          900 ILVSS-GGD--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ  972 (1092)
Q Consensus       900 ~l~s~-s~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~----~i~lwd~~~~~~~~~  972 (1092)
                      .|+.. +.+  ..|.++|+.+++..   .+....+      ......|+|||+.|+...+.    .|+++|+.+++..+.
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~---~LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl  316 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLT---QITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV  316 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEE---EcccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence            77643 333  46888888776522   2322222      12345799999988875432    689999988877554


Q ss_pred             eccCCCCCEEEEEEecCCCEEEEEECC---------CcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCC
Q 001362          973 WFPISSVPISQATFSCDCRMVFTSFVD---------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1043 (1092)
Q Consensus       973 ~~~~h~~~v~~l~fs~dg~~l~t~~~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~ 1043 (1092)
                      ...+.    ....|||||++|+..+..         ..|.+.|+.++... .+...     .   .   ....+|+| |+
T Consensus       317 t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~---~---~~~p~~SP-DG  379 (419)
T PRK04043        317 VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G---V---NQFPRFSS-DG  379 (419)
T ss_pred             ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C---C---cCCeEECC-CC
Confidence            33222    124899999999877654         26888898888653 22211     0   0   11367999 57


Q ss_pred             CEEEEEeCC-CcEEEEeCCCCCC
Q 001362         1044 TQFAVGLTN-GEVYVIEPNEPGD 1065 (1092)
Q Consensus      1044 ~~l~~~~~d-g~v~~w~~~~~~~ 1065 (1092)
                      ..++..+.+ +.-.+|-+.-.+.
T Consensus       380 ~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        380 GSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CEEEEEEccCCcEEEEEEecCCC
Confidence            777666654 3444555544443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.79  E-value=8.9e-06  Score=83.46  Aligned_cols=234  Identities=16%  Similarity=0.157  Sum_probs=153.2

Q ss_pred             ceEEeecCCCceEEEEEcCCCc-EEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-
Q 001362          337 PMSMDFHPVQHTLLLVGTNVGD-TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-  414 (1092)
Q Consensus       337 V~~v~~spdg~~llasg~~d~~-v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-  414 (1092)
                      ...++.+|+....++.+-.-|+ ..+||..+|+......-           -....+.||      -+||+||++|++. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-----------~~gRHFyGH------g~fs~dG~~LytTE   69 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-----------PPGRHFYGH------GVFSPDGRLLYTTE   69 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-----------CCCCEEecC------EEEcCCCCEEEEec
Confidence            3458889966667888877664 78999999988764211           011124455      5799999999987 


Q ss_pred             ----eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEe----------------CCCcEEEEECCC
Q 001362          415 ----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------------DDKTIKVWDAVT  474 (1092)
Q Consensus       415 ----~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~----------------~d~~i~vwd~~~  474 (1092)
                          ...|.|-|||...+  ++...++..|.-.-..+.+.|||+.|.++-|+                .+.++..-|..+
T Consensus        70 nd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s  147 (305)
T PF07433_consen   70 NDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS  147 (305)
T ss_pred             cccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence                34578999999832  45555777776667788999999854444443                234566778888


Q ss_pred             CceeEE--E--ecCCcCeEEEeecccCCccEEEEEecCCe-------EEEEEcCCCCceEEec-------CCCCceEEEE
Q 001362          475 GSRTYS--F--EGHGAPVYSLCPHAKENIHFIFSISVDGK-------IKAWLYDSLGARVDYD-------APGLGCTRMA  536 (1092)
Q Consensus       475 ~~~~~~--~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-------i~vwd~~~~~~~~~~~-------~~~~~i~~~~  536 (1092)
                      |+.+..  +  .-|...|..+++..  +|..++..-..|.       +-+++  .++....+.       .-.+-+-+++
T Consensus       148 G~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa  223 (305)
T PF07433_consen  148 GALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIA  223 (305)
T ss_pred             CceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEE
Confidence            988866  4  33777888888844  4444443322222       23332  222222222       2234688999


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001362          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  603 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~  603 (1092)
                      +++++..+++.+.   ..+.+.+||..+++.+....-..     +..++..+++  ++..+..|.+.
T Consensus       224 ~~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~D-----~cGva~~~~~--f~~ssG~G~~~  280 (305)
T PF07433_consen  224 ADRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLPD-----ACGVAPTDDG--FLVSSGQGQLI  280 (305)
T ss_pred             EeCCCCEEEEECC---CCCEEEEEECCCCCEeeccccCc-----eeeeeecCCc--eEEeCCCccEE
Confidence            9999998887764   25679999999999987776533     6667766666  44444445433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.78  E-value=6.8e-07  Score=99.33  Aligned_cols=340  Identities=14%  Similarity=0.110  Sum_probs=188.4

Q ss_pred             cEEEEEECCCCCEEEEEe----CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC
Q 001362          398 SVNRVVWSPDGSLLGVAY----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  473 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~~----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  473 (1092)
                      .-+-..|+|...++|+++    ..|.|.||- ++|+.-+.. +.   .-.+++++|+|..-  .|+.|-.-|.+.+|...
T Consensus        17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~---P~hatSLCWHpe~~--vLa~gwe~g~~~v~~~~   89 (1416)
T KOG3617|consen   17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TY---PVHATSLCWHPEEF--VLAQGWEMGVSDVQKTN   89 (1416)
T ss_pred             cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-cc---ceehhhhccChHHH--HHhhccccceeEEEecC
Confidence            334467999999999886    357788874 444433211 22   22366799999866  78888889999999987


Q ss_pred             CCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CC--C--ceEEEEEccCCCEEE--
Q 001362          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PG--L--GCTRMAYSANGRRLF--  545 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~--~--~i~~~~~s~dg~~l~--  545 (1092)
                      +.+.-.....|..+|..+.|+  ++|..++++..-|.+.+|.++..+.......  |.  .  ...+...++++.-++  
T Consensus        90 ~~e~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~l  167 (1416)
T KOG3617|consen   90 TTETHTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKL  167 (1416)
T ss_pred             CceeeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhh
Confidence            777666667899999999995  4778999999999999998875444332221  11  1  223444566643221  


Q ss_pred             -EEecCCCCce--eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCC
Q 001362          546 -SCGTSKEGES--FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL  622 (1092)
Q Consensus       546 -~~~~~~~~~~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~  622 (1092)
                       -++-.++...  ...-|..++..  +...           -.-.|+|..++.++.+|+|+--|- .|+.......... 
T Consensus       168 aKaaVtgDe~alD~~fnwk~~~a~--rs~~-----------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~-  232 (1416)
T KOG3617|consen  168 AKAAVTGDESALDEPFNWKESLAE--RSDE-----------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE-  232 (1416)
T ss_pred             hhhhccCchhhhcccccCccchhh--cccc-----------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch-
Confidence             1111111111  12222211111  0100           012478888999999999988774 4555555544322 


Q ss_pred             CCCceEEEccCCCEEEEEeCCCeEEEEECC-CCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001362          623 PENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1092)
Q Consensus       623 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1092)
                         ..+-|.+...-+++...+-++.++-.. +|..        ..+..+.++                  +.......-+
T Consensus       233 ---vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~--------ee~~~vk~s------------------gk~GgrqGgi  283 (1416)
T KOG3617|consen  233 ---VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTS--------EERCAVKVS------------------GKLGGRQGGI  283 (1416)
T ss_pred             ---HHHHHhcccceEEEEeeeceeeEEEecCCCch--------HHhhhhhhc------------------cccCCccCcc
Confidence               334555544455555444444443322 2211        111111111                  0000000012


Q ss_pred             eeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCc
Q 001362          702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  781 (1092)
Q Consensus       702 ~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~  781 (1092)
                      +.+...|.++-        .....     ......+.+++++..+..+.++...|.+.+|.-....+      ....++.
T Consensus       284 A~sEssGvLr~--------~eKyg-----~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f------~g~p~~d  344 (1416)
T KOG3617|consen  284 ACSESSGVLRK--------SEKYG-----LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGF------QGDPTID  344 (1416)
T ss_pred             ccccccccccC--------Ccchh-----hhcCCceEEEEEeccceEEEecccCCcEEEeeecCccc------cCCCCcc
Confidence            33322231111        00111     11456789999999999999999999999997433222      1112344


Q ss_pred             cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEE
Q 001362          782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS  819 (1092)
Q Consensus       782 ~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~  819 (1092)
                      +|.+.+..          ...+.|+.+.|.|--..+++
T Consensus       345 ~w~l~~~~----------e~~g~I~~i~Wg~~k~~~av  372 (1416)
T KOG3617|consen  345 VWTLNGKR----------ESLGKISLIRWGPIKSTAAV  372 (1416)
T ss_pred             eEEecCch----------hhccceEEEEeccccchhhh
Confidence            55544332          24567778888775444443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.76  E-value=8.5e-08  Score=98.34  Aligned_cols=160  Identities=9%  Similarity=0.083  Sum_probs=114.8

Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEEcCCce----eeEeeccccCCeEEEEEcCCCCEEE---EEeCCCcEEEEEcCCCc
Q 001362          847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDALNILV---SSGGDAQIFVWDVDGWG  919 (1092)
Q Consensus       847 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~l~---s~s~Dg~i~iwd~~~~~  919 (1092)
                      ..+..++ ++++||++..+....+++.....    ++..... ...-+++.|..+.....   .++....+.+|+...+.
T Consensus        66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            3445666 88899988888887777765433    2222221 12233444444443333   34555666677666422


Q ss_pred             eeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEEC
Q 001362          920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV  998 (1092)
Q Consensus       920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~  998 (1092)
                            ....-||..   .+..+++|||+++|+++ .|..|++-.+...-.+..+.-||..-|..++.-+ +..|+++|.
T Consensus       144 ------~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sG  213 (390)
T KOG3914|consen  144 ------CEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSG  213 (390)
T ss_pred             ------cchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCC
Confidence                  233445655   79999999999999996 7889999999888888888999999999999865 456999999


Q ss_pred             CCcEEEEEcCCCceEEeecc
Q 001362          999 DGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       999 Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      |+++++||+.+|+.+..+..
T Consensus       214 D~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  214 DKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             CCcEEEEecccCCcccccch
Confidence            99999999999999877653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.75  E-value=1.1e-05  Score=91.37  Aligned_cols=153  Identities=19%  Similarity=0.115  Sum_probs=93.4

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCc--CeE-----EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001362          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVY-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG  529 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  529 (1092)
                      .++.++.++.+.-+|.++|+.+.+......  ...     .+.-.+.-++..++.++.+|.+..+|.++++.........
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~  150 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG  150 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence            466777788999999999998876643220  000     0000011133567788899999999999999887766543


Q ss_pred             CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC--CceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001362          530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~l~~~s~dg~i~iwd~  607 (1092)
                      ....+..+ .++ .++.+..    ++.++.+|..+|+.+-.+.......  ....+-..  .+..++.++.+|.+..+|.
T Consensus       151 ~~~ssP~v-~~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~  222 (394)
T PRK11138        151 EALSRPVV-SDG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM  222 (394)
T ss_pred             ceecCCEE-ECC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence            22111122 234 4444432    5679999999999887765432000  00001111  1345777888999999999


Q ss_pred             CCCceEEEEe
Q 001362          608 NKVQLLTTID  617 (1092)
Q Consensus       608 ~~~~~~~~~~  617 (1092)
                      .+|+.+....
T Consensus       223 ~~G~~~W~~~  232 (394)
T PRK11138        223 EQGQLIWQQR  232 (394)
T ss_pred             cCChhhheec
Confidence            9988766543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.75  E-value=1.2e-06  Score=84.80  Aligned_cols=148  Identities=11%  Similarity=-0.036  Sum_probs=108.1

Q ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001362          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      +.++++|+|++++++.+....|..|.+...............+..=.+..|+....  .++++..||++.|||++.....
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence            88999999999999999999999999976544332223444455566789998887  7999999999999999875544


Q ss_pred             EE-----EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--------CceEEEEEccCCCEEE
Q 001362          479 YS-----FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--------LGCTRMAYSANGRRLF  545 (1092)
Q Consensus       479 ~~-----~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--------~~i~~~~~s~dg~~l~  545 (1092)
                      ..     -..|.+.+..+.|++.+--.+|+..-.-+.+++.|+++......+....        ..+..-.|+.++.-+.
T Consensus       239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~  318 (344)
T KOG4532|consen  239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND  318 (344)
T ss_pred             hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence            32     2358899999999876555677777777899999999877654432222        2355566666665555


Q ss_pred             EEe
Q 001362          546 SCG  548 (1092)
Q Consensus       546 ~~~  548 (1092)
                      +..
T Consensus       319 v~~  321 (344)
T KOG4532|consen  319 VKN  321 (344)
T ss_pred             ccc
Confidence            543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.72  E-value=9.8e-06  Score=80.29  Aligned_cols=249  Identities=10%  Similarity=0.108  Sum_probs=134.0

Q ss_pred             eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001362          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  417 (1092)
Q Consensus       338 ~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d  417 (1092)
                      |.++.++||+ +||.- .|..|.|=.....-.....++.              +.+...-.=..++||||+.+||.+...
T Consensus         1 W~~~~~~~Gk-~lAi~-qd~~iEiRsa~Ddf~si~~kcq--------------VpkD~~PQWRkl~WSpD~tlLa~a~S~   64 (282)
T PF15492_consen    1 WHLALSSDGK-LLAIL-QDQCIEIRSAKDDFSSIIGKCQ--------------VPKDPNPQWRKLAWSPDCTLLAYAEST   64 (282)
T ss_pred             CceeecCCCc-EEEEE-eccEEEEEeccCCchheeEEEe--------------cCCCCCchheEEEECCCCcEEEEEcCC
Confidence            4578899998 56654 4566666655443211111111              122333345679999999999999999


Q ss_pred             CEEEEEEccCCCcccc--eEEEc-ccccceeEEEEecCC-----CcEEEEEEeCCCcEEEEECC-----CCceeEEEec-
Q 001362          418 HIVQLYAYHGGSDARQ--QLEID-AHVGNVNDLAFSAPC-----KQISVITCGDDKTIKVWDAV-----TGSRTYSFEG-  483 (1092)
Q Consensus       418 ~~i~iwd~~~~~~~~~--~~~~~-~h~~~v~~~~~s~d~-----~~l~l~s~~~d~~i~vwd~~-----~~~~~~~~~~-  483 (1092)
                      |+|+++|+.+......  ...+. .-...|..+.|.+-.     .. .|+.-..+|.++=|-+.     ..+..++|.. 
T Consensus        65 G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~  143 (282)
T PF15492_consen   65 GTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS  143 (282)
T ss_pred             CeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEec
Confidence            9999999986443210  00011 123467777776542     11 34455567777766542     2234444432 


Q ss_pred             --CCcCeEEEeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE--EEecCCC--Ccee
Q 001362          484 --HGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF--SCGTSKE--GESF  556 (1092)
Q Consensus       484 --~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~--~~~~~~~--~~~~  556 (1092)
                        +...|.++++++..  ++|+.|+. ...-..+           ......+++-.+-.+..+..  ....+.-  ...+
T Consensus       144 ~~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~  210 (282)
T PF15492_consen  144 SHYPHGINSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKR  210 (282)
T ss_pred             ccCCCceeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEccccCccccccccc
Confidence              46789999997654  45555543 2210000           00111111111111111111  1110000  0001


Q ss_pred             EEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001362          557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  619 (1092)
                      ..+|.+-+...   +.........|..|..+|||..|++...+|.|.+|++.+-++......+
T Consensus       211 ~~~~~~~~~~~---fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  211 RGLLRIPSFKF---FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             cceeeccceee---eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            22333222211   1111222478999999999999999999999999999987776665443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.71  E-value=1.5e-07  Score=103.09  Aligned_cols=294  Identities=13%  Similarity=0.160  Sum_probs=187.8

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC-cccceEEEcccc--cceeEEEEecCCCcE-EEEEEeCCCcEEEEE
Q 001362          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHV--GNVNDLAFSAPCKQI-SVITCGDDKTIKVWD  471 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~--~~v~~~~~s~d~~~l-~l~s~~~d~~i~vwd  471 (1092)
                      .+++.++..+|.|+-+|.++.-| +.+-|+...- ..+    +-.|.  -.|-...|+|....- .+|+.+ .....+|+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr----~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwn   97 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPR----WLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWN   97 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCce----eeeccCcchhcceecccCCCCceeEEecC-cchhhhhh
Confidence            46788999999999999999888 6666776432 222    11232  246678888865433 455544 44567898


Q ss_pred             CCCC---ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEE
Q 001362          472 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       472 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      +...   ..-..+.+|...|+.+-|++.. ...+++++.|-.++.||+++..... ....-......+.|+.....+.+.
T Consensus        98 lA~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas  176 (1081)
T KOG0309|consen   98 LAKSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS  176 (1081)
T ss_pred             hhcCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence            7643   3345668999999999998753 3689999999999999999876543 333334455678888754444433


Q ss_pred             ecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCC
Q 001362          548 GTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1092)
                      +.    ...|.+||.+.| ..+..+++|.   ..|+.+.|..- ...+.+.+.||+|+.||............... ..+
T Consensus       177 sh----g~~i~vwd~r~gs~pl~s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~-~pi  248 (1081)
T KOG0309|consen  177 SH----GNDIFVWDLRKGSTPLCSLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN-FPI  248 (1081)
T ss_pred             cc----CCceEEEeccCCCcceEEecccc---eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecccc-Ccc
Confidence            32    334999999865 5566777766   77888887653 35678899999999999875433222211111 235


Q ss_pred             ceEEEccCCCEEEE--EeCCCeEEE---------EECCC-CceeeecccccCceeeeeecCCCccccccccCCceeecCC
Q 001362          626 PRICFNKNGTLLAV--IANENRIKI---------LETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED  693 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~--~~~dg~i~i---------w~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1092)
                      ..-++-|-|.-.++  .-.+..+.+         |+..+ .+++..+.||.+.|....|-......            ++
T Consensus       249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~------------~d  316 (1081)
T KOG0309|consen  249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECD------------GD  316 (1081)
T ss_pred             eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccccc------------CC
Confidence            55555553332222  111223333         33333 36788888998888766664332211            11


Q ss_pred             CCCCCccceeeccccccceeccc
Q 001362          694 PKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       694 ~s~d~~~l~s~~~d~~i~lw~~~  716 (1092)
                      .....-.|++-+.|.++|+|.+.
T Consensus       317 ~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  317 YDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             CCccceeEEEeecCCceEeeecc
Confidence            12223468899999999999875

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.69  E-value=2.4e-07  Score=91.05  Aligned_cols=261  Identities=14%  Similarity=0.204  Sum_probs=164.0

Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCce-----eeEEecCCCC------------CeEEEEEcCC-CCCEEEE
Q 001362          801 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-----TILTIMPPSP------------TATSLAFNPH-DNNVIAI  861 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~-----~~~~~~~~~~------------~i~~l~~s~~-d~~~las  861 (1092)
                      ....|+++.|...|.||++|. +|.|.+|.-+...     ....+++|..            .|..+.|..+ +...+..
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            567789999999999999998 6889998765432     2334555543            3566666542 2345556


Q ss_pred             EeCCCcEEEEEcCCcee-------------------------------------e----E-ee-ccccCCeEEEEEcCCC
Q 001362          862 GMDDSTILIYNARSSEV-------------------------------------I----S-KL-EGHSKRVTGLVFSDAL  898 (1092)
Q Consensus       862 g~~dg~v~iwd~~~~~~-------------------------------------~----~-~l-~~h~~~V~~l~~spdg  898 (1092)
                      .+.|++|++|.+.....                                     +    . .. ..|.-.|.++.|..|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            77899999998753200                                     0    1 11 3577778899999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE--EeCCcEEEEEcCCcee------e
Q 001362          899 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTC------L  970 (1092)
Q Consensus       899 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~--~~d~~i~lwd~~~~~~------~  970 (1092)
                      ..++++ .|-.|.+|+++-.......+--.+........-|++..|+|....+..  ++.|.|++-|++....      +
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            888876 566799999875332111111111111111135788999998765554  6789999999873221      1


Q ss_pred             -ee--------eccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc-eEEeeccccc----cCCCCccCcccc-eE
Q 001362          971 -KQ--------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE-VQCRILSTAY----LRPTTSCLHVYP-HA 1035 (1092)
Q Consensus       971 -~~--------~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~-~~~~~~~~~~----~~~~~~~~~v~~-~~ 1035 (1092)
                       ..        ++.+-...|..+.||++|+++++-.. -+|++||+...+ .+.++..+..    +..-+-++.|+. ..
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe  342 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE  342 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence             00        11122567889999999999998654 589999998653 3444421111    111112344544 56


Q ss_pred             EEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001362         1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1036 ~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
                      +.|+. |...+.+|+..+...++-...++
T Consensus       343 isfSg-d~~~v~sgsy~NNfgiyp~~ssg  370 (460)
T COG5170         343 ISFSG-DDKHVLSGSYSNNFGIYPTDSSG  370 (460)
T ss_pred             EEecC-CcccccccccccceeeeccccCC
Confidence            77887 45778888887777776644433

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.66  E-value=6.7e-06  Score=86.18  Aligned_cols=223  Identities=13%  Similarity=0.123  Sum_probs=139.0

Q ss_pred             CCeEEEEEcCCceeeEEecCC--CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCC
Q 001362          822 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN  899 (1092)
Q Consensus       822 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~  899 (1092)
                      +|.|..||..+|+.+......  .....+.++.  ++..+++++.++.++.||..+|+.+.+... .+++.... ..++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence            578999999999998887531  1222222332  345777778999999999999999877764 22222111 22455


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCC
Q 001362          900 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS  978 (1092)
Q Consensus       900 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~~~~h~  978 (1092)
                      .++.++.|+.|..+|..+++..-.......+...    .........++..++++ .++.|..+|..+|+.+........
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence            6676778889999999998754431111111110    12233334447777765 589999999999998776543221


Q ss_pred             C---------CEEEEEEecCCCEEEEEECCCc-EEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEE
Q 001362          979 V---------PISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1048 (1092)
Q Consensus       979 ~---------~v~~l~fs~dg~~l~t~~~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~ 1048 (1092)
                      .         .+..-....++ .++.++.++. +.+ |+.+|+.+.+..     ...     ...   ...+ ++..+++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~~---~~~~-~~~~l~~  217 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IYS---LPSV-DGGTLYV  217 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------ECE---CEEC-CCTEEEE
T ss_pred             CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----ccC---Ccee-eCCEEEE
Confidence            1         12222233355 7777777885 555 999999663221     111     111   1222 3577888


Q ss_pred             EeCCCcEEEEeCCCCCCccc
Q 001362         1049 GLTNGEVYVIEPNEPGDTWA 1068 (1092)
Q Consensus      1049 ~~~dg~v~~w~~~~~~~~~~ 1068 (1092)
                      ++.++.|..||+...+..|.
T Consensus       218 ~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  218 TSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EETTTEEEEEETTTTEEEEE
T ss_pred             EeCCCEEEEEECCCCCEEeE
Confidence            88999999999998887774

...

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.65  E-value=2.2e-05  Score=81.50  Aligned_cols=232  Identities=14%  Similarity=0.145  Sum_probs=143.7

Q ss_pred             CccccCCCCCceeeecCCCC---CCCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcC
Q 001362          780 PRLYQPRHGPQFMVNDTTDS---NSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNP  853 (1092)
Q Consensus       780 ~~~w~~~~g~~~~~~~l~~~---~~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~  853 (1092)
                      +.+||+.+-.......++..   ........+++|.||+++.+..   .-.|.|.|+...+.+..+..+. ..   -.-|
T Consensus        69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C~---~iyP  144 (342)
T PF06433_consen   69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-CW---LIYP  144 (342)
T ss_dssp             EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-EE---EEEE
T ss_pred             EEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-EE---EEEe
Confidence            34455555444444444431   0112334578999999999886   4779999999999988876432 21   1122


Q ss_pred             CCCCEEEEEeCCCcEEEEEcC-CceeeEe----eccccCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 001362          854 HDNNVIAIGMDDSTILIYNAR-SSEVISK----LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ  927 (1092)
Q Consensus       854 ~d~~~lasg~~dg~v~iwd~~-~~~~~~~----l~~h~~~V-~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  927 (1092)
                      ..++-+.+.|.||.+.-..+. .|+...+    |..-..++ ..-+++.++..++..+..|.|+--|+............
T Consensus       145 ~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~  224 (342)
T PF06433_consen  145 SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS  224 (342)
T ss_dssp             EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred             cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence            234567788999999999887 4554322    11112222 23455556666766889999999999887655544443


Q ss_pred             cCCCCc---CC-CCCceEEEEecCCCEEEE----EeCC-------cEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-
Q 001362          928 TPDGVM---TL-APSETHIQFHKDQTRFLL----VHET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-  991 (1092)
Q Consensus       928 ~~~~~~---~~-~~~v~~l~~s~dg~~la~----~~d~-------~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-  991 (1092)
                      ......   .. .+.-.-+++++....|.+    +.++       .|.+||+.+++.+.++...  .++.++..|.|.+ 
T Consensus       225 ~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P  302 (342)
T PF06433_consen  225 LLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKP  302 (342)
T ss_dssp             SS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-
T ss_pred             ccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCc
Confidence            321100   00 034567899887766655    2222       4888999999999886644  3577999999887 


Q ss_pred             EEEEE-ECCCcEEEEEcCCCceEEeec
Q 001362          992 MVFTS-FVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       992 ~l~t~-~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      +|++. ..++.+.+||..+|+.+.++.
T Consensus       303 ~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  303 LLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            55444 357899999999999998887

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.65  E-value=6.2e-05  Score=79.00  Aligned_cols=221  Identities=14%  Similarity=0.153  Sum_probs=139.3

Q ss_pred             EEEEec-CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe-cCCCE
Q 001362          739 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAY  816 (1092)
Q Consensus       739 ~l~~s~-~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s-~dg~~  816 (1092)
                      +++|.+ ++..+++-...+.|..|+...                      +. .....+      .....+++. +++++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~----------------------~~-~~~~~~------~~~~G~~~~~~~g~l   54 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT----------------------GE-VEVIDL------PGPNGMAFDRPDGRL   54 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTT----------------------TE-EEEEES------SSEEEEEEECTTSEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCC----------------------Ce-EEEEec------CCCceEEEEccCCEE
Confidence            467777 566555555567777666433                      22 211222      126677887 66555


Q ss_pred             EEEEeCCeEEEEEcCCceeeEEecC-----CCCCeEEEEEcCCCCCEEEEEeCC--------CcEEEEEcCCceeeEeec
Q 001362          817 LFSASGGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGMDD--------STILIYNARSSEVISKLE  883 (1092)
Q Consensus       817 l~~~sdg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~lasg~~d--------g~v~iwd~~~~~~~~~l~  883 (1092)
                       +.+..+.+.++|..+++.......     .....+.+++.| +|++.++....        |.|..++.. ++......
T Consensus        55 -~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~  131 (246)
T PF08450_consen   55 -YVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD  131 (246)
T ss_dssp             -EEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred             -EEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence             445556666669988865443332     334678999999 88877776544        457777777 55433333


Q ss_pred             cccCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCc--eeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcE
Q 001362          884 GHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL  959 (1092)
Q Consensus       884 ~h~~~V~~l~~spdg~~l~-s~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i  959 (1092)
                       .-.....|+|+||++.|. +-+..+.|..+++....  ......+.......   +..-.+++..+|++.++ ...+.|
T Consensus       132 -~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~G~l~va~~~~~~I  207 (246)
T PF08450_consen  132 -GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSDGNLWVADWGGGRI  207 (246)
T ss_dssp             -EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTTS-EEEEEETTTEE
T ss_pred             -CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCCCCEEEEEcCCCEE
Confidence             455578899999998765 56677888888886432  22223333222221   13668999999998887 467899


Q ss_pred             EEEEcCCceeeeeeccCCCCCEEEEEEe-cCCCEEEEEE
Q 001362          960 AIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSF  997 (1092)
Q Consensus       960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~  997 (1092)
                      .+++.. |+.+..+..+ ...+++++|. +|.+.|+..+
T Consensus       208 ~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  208 VVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred             EEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence            999987 8877765554 4589999995 6666665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.64  E-value=3.2e-08  Score=110.09  Aligned_cols=168  Identities=18%  Similarity=0.224  Sum_probs=131.7

Q ss_pred             ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC--cE
Q 001362          833 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA--QI  910 (1092)
Q Consensus       833 ~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--~i  910 (1092)
                      .+..++|..|....+|++|+- +.++|++|+..|.|++|++.+|.......+|.++|+-+.-|-||.++.+.+.-.  ..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            344566777888999999999 899999999999999999999999999999999999999999998877665433  47


Q ss_pred             EEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCC---CCCEEEEEE
Q 001362          911 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS---SVPISQATF  986 (1092)
Q Consensus       911 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~~~~h---~~~v~~l~f  986 (1092)
                      .+|+..+-    ......+.       .-.++.|+..-.+-+.| ......+||+.++..+.+++.+.   +..-.++.|
T Consensus      1170 aLW~~~s~----~~~~Hsf~-------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1170 ALWDASST----GGPRHSFD-------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred             HHhccccc----cCcccccc-------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence            89998861    11222232       35678898886655554 34578999999999887765543   344477889


Q ss_pred             ecCCCEEEEEECCCcEEEEEcCCCceEEeec
Q 001362          987 SCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       987 s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      ||++.+++   +||  .+||++..+.+.+|.
T Consensus      1239 sP~D~LIl---ndG--vLWDvR~~~aIh~FD 1264 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDG--VLWDVRIPEAIHRFD 1264 (1516)
T ss_pred             CCCcceEe---eCc--eeeeeccHHHHhhhh
Confidence            99999888   677  589999888777765

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.61  E-value=8.8e-05  Score=77.84  Aligned_cols=219  Identities=17%  Similarity=0.140  Sum_probs=143.1

Q ss_pred             EEeecC-CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC-CCCCEEEEEeC
Q 001362          339 SMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-PDGSLLGVAYS  416 (1092)
Q Consensus       339 ~v~~sp-dg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s-pdg~~las~~~  416 (1092)
                      +++|.+ +|. |+.+-...+.|..|+..++.....                    ...  ....+++. ++|++ +++..
T Consensus         4 gp~~d~~~g~-l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g~l-~v~~~   59 (246)
T PF08450_consen    4 GPVWDPRDGR-LYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDGRL-YVADS   59 (246)
T ss_dssp             EEEEETTTTE-EEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTSEE-EEEET
T ss_pred             ceEEECCCCE-EEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCCEE-EEEEc
Confidence            578998 554 788877889999999988765431                    111  26677777 66554 45555


Q ss_pred             CCEEEEEEccCCCcccceEEEc--c-cccceeEEEEecCCCcEEEEEEeCC--------CcEEEEECCCCceeEEEecCC
Q 001362          417 KHIVQLYAYHGGSDARQQLEID--A-HVGNVNDLAFSAPCKQISVITCGDD--------KTIKVWDAVTGSRTYSFEGHG  485 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~~~--~-h~~~v~~~~~s~d~~~l~l~s~~~d--------~~i~vwd~~~~~~~~~~~~~~  485 (1092)
                      .+ +.++|..+++.. ......  . .....+.+++.++|+  +.++....        |.|..++.. ++...... .-
T Consensus        60 ~~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~  133 (246)
T PF08450_consen   60 GG-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL  133 (246)
T ss_dssp             TC-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred             Cc-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence            55 566699887533 222331  2 345789999999999  56665433        457777766 55443333 34


Q ss_pred             cCeEEEeecccCCccEE-EEEecCCeEEEEEcCCCCc----eE---EecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001362          486 APVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGA----RV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       486 ~~v~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~----~~---~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                      ...+.++|++  +++.| ++-+..+.|..++++....    ..   .+....+....+++..+|+..++...    .+.|
T Consensus       134 ~~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I  207 (246)
T PF08450_consen  134 GFPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRI  207 (246)
T ss_dssp             SSEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEE
T ss_pred             ccccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEE
Confidence            5578899965  55555 5667888899999875443    11   12222234788999999987776543    5569


Q ss_pred             EEEeCCCCeEEEEEeeccccCCceEEEEE-cCCCCEEEEEe
Q 001362          558 VEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAG  597 (1092)
Q Consensus       558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~p~~~~l~~~s  597 (1092)
                      .++|.. |+.+..+....   ..+++++| .++.+.|++.+
T Consensus       208 ~~~~p~-G~~~~~i~~p~---~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  208 VVFDPD-GKLLREIELPV---PRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEETT-SCEEEEEE-SS---SSEEEEEEESTTSSEEEEEE
T ss_pred             EEECCC-ccEEEEEcCCC---CCEEEEEEECCCCCEEEEEe
Confidence            999987 88888887764   57899999 46767776654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=1.2e-06  Score=90.99  Aligned_cols=298  Identities=13%  Similarity=0.140  Sum_probs=190.8

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001362          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      |...|+.+..+ -.+++++++-||.++.|.-..-                    .|..+..   ....|...+.+++.+-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i--------------------sGvEfVK---hFraHL~~I~sl~~S~   63 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI--------------------SGVEFVK---HFRAHLGVILSLAVSY   63 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCc--------------------cceeehh---hhHHHHHHHHhhhccc
Confidence            66667666544 4567899999999999862210                    1111111   1113777888999999


Q ss_pred             CCCEEEEEe--CCeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCC--CEEEEEeCCCcEEEEEcCCce-eeEee-ccc
Q 001362          813 NDAYLFSAS--GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDN--NVIAIGMDDSTILIYNARSSE-VISKL-EGH  885 (1092)
Q Consensus       813 dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~--~~lasg~~dg~v~iwd~~~~~-~~~~l-~~h  885 (1092)
                      +|.++.+.+  |..++++|+++...+..++-.. ....+...++.|.  .+-++.-.+|.+.++|-.... ....+ .-|
T Consensus        64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH  143 (558)
T KOG0882|consen   64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH  143 (558)
T ss_pred             cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence            999999976  6889999998776654333211 1122333344111  233334467899999976543 33333 349


Q ss_pred             cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee--eee------eecCCCCcCCCCCceEEEEecCCCEEEE-EeC
Q 001362          886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT--CRS------LQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE  956 (1092)
Q Consensus       886 ~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~--~~~------~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d  956 (1092)
                      ..+|.++.+++-+..++|....|.|.-|..+. ..+.  ...      -..+-+.........++.|+|+|..+++ +.|
T Consensus       144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D  222 (558)
T KOG0882|consen  144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD  222 (558)
T ss_pred             cCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence            99999999999999999999999999999884 1000  000      0001111122245789999999999999 788


Q ss_pred             CcEEEEEcCCceeeeeeccC-------------------------------C-CCCEEEEEEecCCCEEEEEECCCcEEE
Q 001362          957 THLAIYEAEELTCLKQWFPI-------------------------------S-SVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus       957 ~~i~lwd~~~~~~~~~~~~~-------------------------------h-~~~v~~l~fs~dg~~l~t~~~Dg~i~v 1004 (1092)
                      ..|++++..+|+.++.+-..                               | ...-+.++|...|.+|+-++-=| |+|
T Consensus       223 rkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikv  301 (558)
T KOG0882|consen  223 RKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKV  301 (558)
T ss_pred             cEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEE
Confidence            99999999998766542111                               2 34446678999999999887654 899


Q ss_pred             EEcCCCceEEeecccc---------ccCCC-CccCc------ccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001362         1005 HEASNLEVQCRILSTA---------YLRPT-TSCLH------VYPHAIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus      1005 wd~~~~~~~~~~~~~~---------~~~~~-~~~~~------v~~~~~~~~p~~~~~l~~~~~dg~v~~w 1058 (1092)
                      .++.++.+.+.+....         +.... .+...      ..++ +.+.+ |+..++++-.-..+++|
T Consensus       302 in~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~-~~~~~-dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  302 INLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL-LEFQK-DPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             EEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc-cccCC-CCeEEEeeeecceEEEE
Confidence            9999998876543111         11000 00000      1111 22444 67888888888999998

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.60  E-value=9e-07  Score=87.10  Aligned_cols=159  Identities=21%  Similarity=0.280  Sum_probs=109.3

Q ss_pred             CCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce---eeEEecCCC-----CCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 001362          800 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---TILTIMPPS-----PTATSLAFNPHDNNVIAIGMDDSTILIY  871 (1092)
Q Consensus       800 ~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~---~~~~~~~~~-----~~i~~l~~s~~d~~~lasg~~dg~v~iw  871 (1092)
                      .|...+.++.|..|.+.++++.|=.|-+|+++--.   .+..+++|.     .-|++..|+|.....+...+..|.|++-
T Consensus       170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~  249 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN  249 (460)
T ss_pred             cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence            47888999999999999999999999999986322   233445554     3578999999777888889999999999


Q ss_pred             EcCCcee----------------eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001362          872 NARSSEV----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  935 (1092)
Q Consensus       872 d~~~~~~----------------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  935 (1092)
                      |++...+                ..-+.+-...|..+.|+++|+++++-+. -+|+|||+...+.    ++.+..-|...
T Consensus       250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~----pikTi~~h~~l  324 (460)
T COG5170         250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN----PIKTIPMHCDL  324 (460)
T ss_pred             hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC----CceeechHHHH
Confidence            9973211                1112223456888999999999997654 5699999986431    22222111100


Q ss_pred             ---------CCC---ceEEEEecCCCEEEEE-eCCcEEEEE
Q 001362          936 ---------APS---ETHIQFHKDQTRFLLV-HETHLAIYE  963 (1092)
Q Consensus       936 ---------~~~---v~~l~~s~dg~~la~~-~d~~i~lwd  963 (1092)
                               ...   -..+.||.|.+.+.+| ..+...+|-
T Consensus       325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             HHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence                     011   2457889888888874 455555555

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.59  E-value=1.3e-05  Score=77.77  Aligned_cols=201  Identities=14%  Similarity=0.104  Sum_probs=134.3

Q ss_pred             CEEEEEe-CCeEEEEEcCCceeeE-EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEE
Q 001362          815 AYLFSAS-GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL  892 (1092)
Q Consensus       815 ~~l~~~s-dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l  892 (1092)
                      -+||.|+ .|...+|...+.+... ....+...|+-+.-.-+...-+..++.|.++++.+++.+.....+.-..-.+.++
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~  164 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL  164 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence            4666665 5899999998665433 3333444332211111122345567888888888887654333222111237889


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceee-
Q 001362          893 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCL-  970 (1092)
Q Consensus       893 ~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~-  970 (1092)
                      ++|+|++++++.++...|..|.++.......+.......     ..-.+..|+.....+|+ ..||++.|||++..... 
T Consensus       165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-----D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-----DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-----CCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence            999999999999999999999998754333221111111     23568899999999998 68999999999865432 


Q ss_pred             ---eeeccCCCCCEEEEEEecCCC--EEEEEECCCcEEEEEcCCCceEEeecccc
Q 001362          971 ---KQWFPISSVPISQATFSCDCR--MVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus       971 ---~~~~~~h~~~v~~l~fs~dg~--~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
                         ....+.|.+.+..+.||+-|.  +|+..-.-+.+.|-|+++++-...+....
T Consensus       240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~  294 (344)
T KOG4532|consen  240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD  294 (344)
T ss_pred             hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence               223456899999999998663  45555556789999999998887776444

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.56  E-value=1.5e-05  Score=83.45  Aligned_cols=195  Identities=14%  Similarity=0.112  Sum_probs=121.4

Q ss_pred             CCCEEEEE-eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee-cccc---C
Q 001362          813 NDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHS---K  887 (1092)
Q Consensus       813 dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~---~  887 (1092)
                      ++..++++ .++.+..||..+|+.+..+............   .+..+++++.++.++.+|..+|+.+... ....   .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence            45555555 5799999999999998887653221122222   3346666778899999999999998874 3221   1


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC--CCCCceEEEEecCCCEEEEEeCCc-EEEEEc
Q 001362          888 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT--LAPSETHIQFHKDQTRFLLVHETH-LAIYEA  964 (1092)
Q Consensus       888 ~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~s~dg~~la~~~d~~-i~lwd~  964 (1092)
                      .........++..++.+..++.|..+|.++|+..-............  ....+..-....++..+++..++. +.+ |+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~  190 (238)
T PF13360_consen  112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DL  190 (238)
T ss_dssp             TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ET
T ss_pred             cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-EC
Confidence            12223333347888888889999999999987654333322221110  000122333333554444456665 555 99


Q ss_pred             CCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEe
Q 001362          965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015 (1092)
Q Consensus       965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~ 1015 (1092)
                      .+++.+-. ..  ...+.. ....++..|+.++.++.+..||+.+|+....
T Consensus       191 ~tg~~~w~-~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  191 ATGEKLWS-KP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TTTEEEEE-EC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CCCCEEEE-ec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            99986632 11  222222 2457788888888999999999999988743

...

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.55  E-value=1.6e-06  Score=83.61  Aligned_cols=209  Identities=14%  Similarity=0.207  Sum_probs=126.5

Q ss_pred             ceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001362          337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  416 (1092)
Q Consensus       337 V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~  416 (1092)
                      |+.+.|+-+-  .|+++..++.+.....-++.+..     .|.=.....++..  +..|.++-.+-+.+--++.+++++.
T Consensus        39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~~~--~a~~sep~p~~~~s~~~t~V~~~~~  109 (319)
T KOG4714|consen   39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPFKV--LAKNSEIDPNDACTMTDNRVCIGYA  109 (319)
T ss_pred             EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCceee--eeccCCCCCcccccccCCceEecCC
Confidence            6666777654  57888888877777665554432     1211111122222  2235544444455556889999999


Q ss_pred             CCEEEEEEccCCCcccceEEEc-ccccceeEEEEecCCCcEEEEEEe-----CCCcEEEEECCCCceeEEEecCCcCeEE
Q 001362          417 KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS  490 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~  490 (1092)
                      ||.+.+.+.+.-..+..  .+. .|.+. .+.+....+.  .+.+++     .-+..++|+++..+.+..-......|.+
T Consensus       110 dg~~~v~s~~~~~~~~~--~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~  184 (319)
T KOG4714|consen  110 DGSLAVFSTDKDLALMS--RIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA  184 (319)
T ss_pred             CceEEEEechHHHhhhh--hcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence            99999999876222111  111 12221 1223333344  233322     2234566665544333222222334888


Q ss_pred             EeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCC
Q 001362          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       491 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      ++-+|... +.+++|+.||.+-+||++...... .+..|+.++..+-|+| ++..|+++++    ++.+..||..+
T Consensus       185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~  255 (319)
T KOG4714|consen  185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST  255 (319)
T ss_pred             hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence            88887654 688999999999999999875443 5677888999999999 5678888876    55599999654

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.52  E-value=2.1e-05  Score=88.31  Aligned_cols=136  Identities=13%  Similarity=0.061  Sum_probs=90.5

Q ss_pred             EecCCCEEEEEeCCeEEEEEcCC----c-eeeEEecCCCCCeEEEEEcCCCCCEEEEE-eCCCcEEEEEcCCcee-----
Q 001362          810 LSKNDAYLFSASGGVISLYIVMT----F-KTILTIMPPSPTATSLAFNPHDNNVIAIG-MDDSTILIYNARSSEV-----  878 (1092)
Q Consensus       810 ~s~dg~~l~~~sdg~i~iwd~~~----~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg-~~dg~v~iwd~~~~~~-----  878 (1092)
                      +.++|++... .++.|.+.|..+    + +.+..+. -......++++| ||++++++ ..+.+|.|+|+.+.+.     
T Consensus       284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~  360 (635)
T PRK02888        284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK  360 (635)
T ss_pred             hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence            4557887665 467899999988    3 4444443 456678899999 77766654 4588999999988552     


Q ss_pred             -------eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------CceeeeeeeecCCCCcCCCCCceEEEE-
Q 001362          879 -------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG------WGIQTCRSLQTPDGVMTLAPSETHIQF-  944 (1092)
Q Consensus       879 -------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~v~~l~~-  944 (1092)
                             +.+.+--.+ -...+|.++|+...|..-|..|..|++..      ++. ....+....-+..    +-.+.- 
T Consensus       361 ~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~-~~~v~~k~dV~y~----pgh~~~~  434 (635)
T PRK02888        361 IKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEK-VDPIVQKLDVHYQ----PGHNHAS  434 (635)
T ss_pred             CCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhcccc-CCcceecccCCCc----cceeeec
Confidence                   334333223 34578999999999999999999999986      111 1123333333322    223333 


Q ss_pred             -----ecCCCEEEEE
Q 001362          945 -----HKDQTRFLLV  954 (1092)
Q Consensus       945 -----s~dg~~la~~  954 (1092)
                           .|||++|++.
T Consensus       435 ~g~t~~~dgk~l~~~  449 (635)
T PRK02888        435 MGETKEADGKWLVSL  449 (635)
T ss_pred             CCCcCCCCCCEEEEc
Confidence                 7899999883

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.52  E-value=6.8e-05  Score=88.23  Aligned_cols=121  Identities=19%  Similarity=0.249  Sum_probs=84.5

Q ss_pred             eEEEEecCCCEEEEEe-----C-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe---CCCcEEEEEcCC-
Q 001362          806 PCFALSKNDAYLFSAS-----G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DDSTILIYNARS-  875 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~s-----d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~-  875 (1092)
                      ..+.|.-||+++|+..     + ..|+|||-+ |.+-..-....+.-.+++|-| .|.++|+-.   .|+.|.+|.-+. 
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL  276 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGL  276 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCc
Confidence            4689999999999853     4 679999987 554443333445557899999 888888753   455799987653 


Q ss_pred             --ceeeEeeccccCCeEEEEEcCCCCEEEE---EeCCCcEEEEEcCCCceeeeeeeec
Q 001362          876 --SEVISKLEGHSKRVTGLVFSDALNILVS---SGGDAQIFVWDVDGWGIQTCRSLQT  928 (1092)
Q Consensus       876 --~~~~~~l~~h~~~V~~l~~spdg~~l~s---~s~Dg~i~iwd~~~~~~~~~~~~~~  928 (1092)
                        |+....+.....+|..++|+.++..||+   ......|++|-+.+........++.
T Consensus       277 ~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~  334 (1265)
T KOG1920|consen  277 RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQF  334 (1265)
T ss_pred             cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEec
Confidence              2223333434455999999999999998   5555569999998865444333333

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.52  E-value=0.00069  Score=65.92  Aligned_cols=136  Identities=13%  Similarity=-0.039  Sum_probs=88.4

Q ss_pred             cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC
Q 001362          500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN  579 (1092)
Q Consensus       500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~  579 (1092)
                      .+++.|+..+.+.-.|..++......... ..+.+-+.- -|++++.+..    .+.+++.+.++|.....+....   .
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~---~   94 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILE---T   94 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehh---h
Confidence            46677777777777777776655543322 233332222 4667777765    4459999999998888777654   2


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE
Q 001362          580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI  646 (1092)
Q Consensus       580 ~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i  646 (1092)
                      --......+++..+.+|+.|++.+..|..+...+...+..+..  ..+-+..|-...|.++...|.+
T Consensus        95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen   95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceE
Confidence            2233456788999999999999999999999998887766553  2334445522233333333443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.49  E-value=0.00012  Score=76.28  Aligned_cols=285  Identities=12%  Similarity=0.128  Sum_probs=153.1

Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeCCCC---
Q 001362          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG---  621 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~---  621 (1092)
                      ..++++|..+++.+..+..-     -...+..+|+++.+++++          ..-.|.+||..+-.....+..+..   
T Consensus        17 ~rv~viD~d~~k~lGmi~~g-----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~   91 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG-----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA   91 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE-----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred             ceEEEEECCCCcEEEEeecc-----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence            45999999999988887763     345577899999998754          334699999999988887765542   


Q ss_pred             --CCCCceEEEccCCCEEEEEeC--CCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCC
Q 001362          622 --LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED  697 (1092)
Q Consensus       622 --~~~v~~v~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  697 (1092)
                        .......+++.||+++.+...  ..+|.|.|+..++.+..+....    |.-+-|.+                     
T Consensus        92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~---------------------  146 (342)
T PF06433_consen   92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSG---------------------  146 (342)
T ss_dssp             -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEE---------------------
T ss_pred             eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecC---------------------
Confidence              123456788888888877543  4678888888776655443211    00011100                     


Q ss_pred             CccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccc
Q 001362          698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK  777 (1092)
Q Consensus       698 ~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~  777 (1092)
                      .+.+.+-+.||.+....++............-......-+..-++...+..++-.+-+|.++--++.......       
T Consensus       147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-------  219 (342)
T PF06433_consen  147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF-------  219 (342)
T ss_dssp             TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE-------
T ss_pred             CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc-------
Confidence            0112333334444333333111100000000000111122233444455555556677777766665432211       


Q ss_pred             cCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe----CC-------eEEEEEcCCceeeEEecCCCCCe
Q 001362          778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GG-------VISLYIVMTFKTILTIMPPSPTA  846 (1092)
Q Consensus       778 ~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s----dg-------~i~iwd~~~~~~~~~~~~~~~~i  846 (1092)
                        ..-|...+...... ..    ..+.-.-+++++..+.|.+.-    ++       .|.++|+.+++.+.++.. ...+
T Consensus       220 --~~~~~~~t~~e~~~-~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~  291 (342)
T PF06433_consen  220 --GKPWSLLTDAEKAD-GW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPI  291 (342)
T ss_dssp             --EEEEESS-HHHHHT-TE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEE
T ss_pred             --cCcccccCcccccc-Cc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCcc
Confidence              01121111000000 00    012223466766554444431    11       388999999999998873 2457


Q ss_pred             EEEEEcCCCCCEEEEEe-CCCcEEEEEcCCceeeEeecc
Q 001362          847 TSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG  884 (1092)
Q Consensus       847 ~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~~~~l~~  884 (1092)
                      .+++++.++..+|++.+ .++.+.+||..+|+.+.++.+
T Consensus       292 ~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  292 DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            79999996666776554 578999999999999988874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.49  E-value=4.2e-05  Score=85.97  Aligned_cols=182  Identities=12%  Similarity=0.069  Sum_probs=117.4

Q ss_pred             EecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC----cEEEEEcCCceeeEeec
Q 001362          810 LSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLE  883 (1092)
Q Consensus       810 ~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~  883 (1092)
                      ++|||+.+...+  .+.+.+.|.++.+...++.-. +....++++| +++++++.+.+.    ++..-+..+...+..+.
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn  277 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN  277 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence            567887765554  477889999988877776533 2456789999 888888776322    22222222211111111


Q ss_pred             cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC----CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCC
Q 001362          884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HET  957 (1092)
Q Consensus       884 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~  957 (1092)
                      -  ..+  -++.++|++...  .++.|.+.|..+    +. .....+....       ....+++||||++++++  .+.
T Consensus       278 i--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIPVGK-------sPHGV~vSPDGkylyVanklS~  343 (635)
T PRK02888        278 I--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVPVPK-------NPHGVNTSPDGKYFIANGKLSP  343 (635)
T ss_pred             h--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEECCC-------CccceEECCCCCEEEEeCCCCC
Confidence            0  000  133457877665  367799999887    22 1122333333       35679999999999984  578


Q ss_pred             cEEEEEcCCcee------------eeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001362          958 HLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus       958 ~i~lwd~~~~~~------------~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
                      ++.|+|+.+.+.            ..+...  .......+|.++|....|-.-|..|..|++..
T Consensus       344 tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            999999987553            222221  34455678999999888888999999999987

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.48  E-value=5e-07  Score=90.43  Aligned_cols=169  Identities=16%  Similarity=0.103  Sum_probs=127.0

Q ss_pred             ceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001362          337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  416 (1092)
Q Consensus       337 V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~  416 (1092)
                      -+.++||-+-.-+-++.+.+-.|-+-|+++|-...                    + ...+.|.++.|...+.++..|..
T Consensus       214 a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcR  272 (425)
T KOG2695|consen  214 AWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCR  272 (425)
T ss_pred             chhhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEeccc
Confidence            34447775432233445566789999999985442                    1 15678999999999999999999


Q ss_pred             CCEEEEEEccCCCc--ccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECCCCce---eEEEecCCcCeEE
Q 001362          417 KHIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYS  490 (1092)
Q Consensus       417 d~~i~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~  490 (1092)
                      +|.|...|+..+..  ...... -.|...|+++.... +++  .|.+.+.+|+|++||.+--++   ++.+.||-..-.-
T Consensus       273 ngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~  349 (425)
T KOG2695|consen  273 NGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAY  349 (425)
T ss_pred             CCcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccc
Confidence            99999999986521  111112 25889999998877 455  788899999999999887666   8889999776666


Q ss_pred             EeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001362          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG  529 (1092)
Q Consensus       491 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  529 (1092)
                      +-++..+....+++++.|...|+|.++.+....++....
T Consensus       350 l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  350 LPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             cccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            666667777899999999999999999888776655443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.47  E-value=4.5e-07  Score=63.25  Aligned_cols=39  Identities=31%  Similarity=0.595  Sum_probs=37.2

Q ss_pred             ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001362          876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1092)
Q Consensus       876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd  914 (1092)
                      |+++.++.+|.+.|++|+|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.45  E-value=0.00019  Score=79.62  Aligned_cols=255  Identities=16%  Similarity=0.222  Sum_probs=131.5

Q ss_pred             cCCCceEEEEE--------cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          343 HPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       343 spdg~~llasg--------~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      |||++++|+.-        +..+.+.|+|+++++...                    +......+....|||||+++|..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v   60 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV   60 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence            78998766522        123668889988876553                    11224678889999999999998


Q ss_pred             eCCCEEEEEEccCCCcccceEEEcc-------c---------ccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001362          415 YSKHIVQLYAYHGGSDARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~~~~-------h---------~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      . ++.|.+++..++...+.  +..|       -         -+.-..+.|||||+++.++.. .+..|..+.+.     
T Consensus        61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~-d~~~v~~~~~~-----  131 (353)
T PF00930_consen   61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF-DEREVPEYPLP-----  131 (353)
T ss_dssp             E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE-E-TTS-EEEEE-----
T ss_pred             e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE-CCcCCceEEee-----
Confidence            5 46799999887743321  2222       0         112357889999995333322 23444443311     


Q ss_pred             EEEecCCc---CeEEEeecccCCccEEEEEecCC--eEEEEEcCCCCceE-Ee----cCCCCceEEEEEccCCCEEEEEe
Q 001362          479 YSFEGHGA---PVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARV-DY----DAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       479 ~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~-~~----~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                       .......   .+..+.+ |.+       |..+-  .+.++|+.+++... ..    .....-+..+.|+++++.++..-
T Consensus       132 -~~~~~~~~yp~~~~~~Y-Pk~-------G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~  202 (353)
T PF00930_consen  132 -DYSPPDSQYPEVESIRY-PKA-------GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQW  202 (353)
T ss_dssp             -EESSSTESS-EEEEEE---BT-------TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEE
T ss_pred             -ccCCccccCCccccccc-CCC-------CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEE
Confidence             0101110   1222222 111       11111  35667877766532 21    23344688999999999444433


Q ss_pred             cCC-CCceeEEEEeCCCCeEEEEEeeccccCCce---EEEEEc-CCCCEEEE-EeCCCcEE--EEECCCCceEEEEeCCC
Q 001362          549 TSK-EGESFLVEWNESEGAIKRTYQGLQLQHNSV---SVVHFD-TAKDQILA-AGDDHVIK--IWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       549 ~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---~~~~~~-p~~~~l~~-~s~dg~i~--iwd~~~~~~~~~~~~~~  620 (1092)
                      .++ .....+.+.|..++..........  ...|   ....+. +++..++- ...+|.-+  +++..++... .+..  
T Consensus       203 ~nR~q~~~~l~~~d~~tg~~~~~~~e~~--~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~--  277 (353)
T PF00930_consen  203 LNRDQNRLDLVLCDASTGETRVVLEETS--DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTS--  277 (353)
T ss_dssp             EETTSTEEEEEEEEECTTTCEEEEEEES--SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS---
T ss_pred             cccCCCEEEEEEEECCCCceeEEEEecC--CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-cccc--
Confidence            333 345667788888776654443332  2222   244444 66655544 44666544  4565555533 3321  


Q ss_pred             CCCCCc-eEEEccCCCEEEEE
Q 001362          621 GLPENP-RICFNKNGTLLAVI  640 (1092)
Q Consensus       621 ~~~~v~-~v~~s~~~~~l~~~  640 (1092)
                      +.-.|. -+.++++++.+...
T Consensus       278 G~~~V~~i~~~d~~~~~iyf~  298 (353)
T PF00930_consen  278 GDWEVTSILGWDEDNNRIYFT  298 (353)
T ss_dssp             SSS-EEEEEEEECTSSEEEEE
T ss_pred             CceeecccceEcCCCCEEEEE
Confidence            222343 35667766655433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=4.4e-06  Score=86.81  Aligned_cols=258  Identities=15%  Similarity=0.084  Sum_probs=175.9

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-CCcEEEEECC
Q 001362          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAV  473 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~  473 (1092)
                      |.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|-+.|.+++.+-|+.  ++.|.+. |..++++|++
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence            77788877655 467999999999999998765233333335668999999999999998  7888776 9999999988


Q ss_pred             CCceeEEEecCCcCeEEEeeccc-CCc--cEEEEEecCCeEEEEEcCCCCce--EEecCCCCceEEEEEccCCCEEEEEe
Q 001362          474 TGSRTYSFEGHGAPVYSLCPHAK-ENI--HFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~v~~~~~~~~-~~~--~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      +-..+.-++-..-|= .+.|... ++-  .+-++.-.+|.+.++|-....+.  ..-..|..+|..+.+++-+..+++.-
T Consensus        85 n~DminmiKL~~lPg-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD  163 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPG-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID  163 (558)
T ss_pred             ccchhhhcccccCCC-ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence            765443322111111 1112111 111  23344456788999987665533  34456778999999999999888764


Q ss_pred             cCCCCceeEEEEeCCC------CeEEEEE------eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001362          549 TSKEGESFLVEWNESE------GAIKRTY------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  616 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~------~~~~~~~------~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~  616 (1092)
                          ..+.|..|....      .+..-.+      -+.........++.|+|++..+.+-+.|..|++++..+|+.++.+
T Consensus       164 ----~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  164 ----ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             ----ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence                367799998762      1111111      111112356788999999999999999999999999998776544


Q ss_pred             eCCC-------------------------------CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001362          617 DAGG-------------------------------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       617 ~~~~-------------------------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                      ....                               ....-..++|...|++|+-++-- -|++.++.+++..+.+.
T Consensus       240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILG  314 (558)
T ss_pred             hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEec
Confidence            3110                               11123457888889999888775 48899999887766554

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.43  E-value=2.7e-06  Score=81.98  Aligned_cols=208  Identities=15%  Similarity=0.171  Sum_probs=124.4

Q ss_pred             EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce-eeEeecc-ccCCeEEEEEcCCCCEEEEEeC-----CCc
Q 001362          837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGG-----DAQ  909 (1092)
Q Consensus       837 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~-h~~~V~~l~~spdg~~l~s~s~-----Dg~  909 (1092)
                      ..+..|..+-.+-+.+- -+.-++++..||.+.+++.+.-. ...+... |.+. .+......++.+.+++.     -+.
T Consensus        83 ~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~  160 (319)
T KOG4714|consen   83 KVLAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDN  160 (319)
T ss_pred             eeeeccCCCCCcccccc-cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccc
Confidence            33433443333334444 46688999999999999877521 1111111 2221 11222234444443321     123


Q ss_pred             EEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-E-eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEe
Q 001362          910 IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFS  987 (1092)
Q Consensus       910 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs  987 (1092)
                      .++|+++..+        ++.........|.+++-.|..+.+++ | .||.+.+||.+.......++..|..+++.+.|.
T Consensus       161 ~~a~~~~p~~--------t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FH  232 (319)
T KOG4714|consen  161 FYANTLDPIK--------TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFH  232 (319)
T ss_pred             eeeecccccc--------cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheecc
Confidence            5666665422        11111111124888999998776665 4 778999999999888888888999999999999


Q ss_pred             c-CCCEEEEEECCCcEEEEEcCCCceEEeec---cccccCCCCccCcccc------------eEE-EECCCCCCEEEEEe
Q 001362          988 C-DCRMVFTSFVDGTLSIHEASNLEVQCRIL---STAYLRPTTSCLHVYP------------HAI-AAHPLKPTQFAVGL 1050 (1092)
Q Consensus       988 ~-dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~v~~------------~~~-~~~p~~~~~l~~~~ 1050 (1092)
                      | ++..|+++++||.+--||..+--+-....   ...|+..    +++++            +++ .|+- -+..|++|+
T Consensus       233 pk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsg----D~v~s~i~i~~ll~~~~~SinsfDV-~g~~lVcgt  307 (319)
T KOG4714|consen  233 PKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSG----DPVKSRIEITSLLPSRSLSINSFDV-LGPCLVCGT  307 (319)
T ss_pred             CCCchheeEecCCCcEEEEcCCCceEEecCccccccccccC----CcccceEeeeccccccceeeeeeec-cCceEEecc
Confidence            8 67899999999999999988633221111   1112222    22222            111 1222 256899999


Q ss_pred             CCCcEEEEe
Q 001362         1051 TNGEVYVIE 1059 (1092)
Q Consensus      1051 ~dg~v~~w~ 1059 (1092)
                      +-+.|++.+
T Consensus       308 d~eaIyl~~  316 (319)
T KOG4714|consen  308 DAEAIYLTR  316 (319)
T ss_pred             ccceEEEec
Confidence            999999876

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.41  E-value=5.1e-06  Score=93.92  Aligned_cols=180  Identities=16%  Similarity=0.182  Sum_probs=131.7

Q ss_pred             CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEE
Q 001362          813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG  891 (1092)
Q Consensus       813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  891 (1092)
                      ++..++.|+ ...+..+|+.+.+..+...-..+.|+-+..   +++++.+|...|+|.+-|..+.+.++++.+|++.|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            334455554 677888999988887777655555655555   6789999999999999999999999999999999977


Q ss_pred             EEEcCCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC--CCEEEEEeCCcEE
Q 001362          892 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD--QTRFLLVHETHLA  960 (1092)
Q Consensus       892 l~~spdg~~l~s~s~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d--g~~la~~~d~~i~  960 (1092)
                      +..  .|+.|+++|.         |.-|+|||+..-+...  +++.+.+       ..-+.|.|.  .+..+++..|+..
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q  291 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ  291 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence            655  6899999985         5568999998743222  3333333       234667775  3444457888999


Q ss_pred             EEEcC---CceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001362          961 IYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus       961 lwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd 1006 (1092)
                      +-|..   +...-.......+..+..+++|++|..|+.|..+|.|.+|.
T Consensus       292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            88843   22111111223356699999999999999999999999997

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=98.39  E-value=8.2e-07  Score=84.04  Aligned_cols=133  Identities=22%  Similarity=0.284  Sum_probs=95.9

Q ss_pred             HHHHHHHhcCcCHHHHHHHhccCC-CcCCccccchhhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001362           38 MKFFEDMILDGKWEDVEQYLSSFT-KVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELA  116 (1092)
Q Consensus        38 ~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~  116 (1092)
                      ...++++|++|+++.|++.++... .+...  ...+.|.|++|+|+|+|..++..+|+.+.|+.+.|......+.++.+.
T Consensus         5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~--~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~   82 (145)
T PF10607_consen    5 RKKIRQAILNGDIDPAIEWLNENFPELLKR--NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM   82 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc--CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            678999999999999999998752 22111  123889999999999999999999999999999766543456677788


Q ss_pred             HhhcccCccc--ccccccccCCChHHHHHHHHHHHhhcccCcccccccCCCCCc-cHHHHHHHHHHHHHH
Q 001362          117 QLLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNWQ  183 (1092)
Q Consensus       117 ~ll~~~~~~~--~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~Ll~qa~~~q  183 (1092)
                      .+|...+..+  ...+..+.  ..+.|..+.+.+.+.+-...-         +| .+.|..++++....+
T Consensus        83 ~lL~~~~~~~~~~s~~~~l~--~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l  141 (145)
T PF10607_consen   83 SLLAYPDPEEPLPSPYKELL--SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL  141 (145)
T ss_pred             HHHHcCCcccccchHHHHHh--ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence            8887766544  22222221  236788888888887655332         34 567888888776554

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.39  E-value=7e-07  Score=62.30  Aligned_cols=38  Identities=29%  Similarity=0.455  Sum_probs=35.3

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEe
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD  363 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd  363 (1092)
                      ++++++.+|++.|++++|+|++. ++++|+.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            46789999999999999999998 799999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.38  E-value=9.4e-05  Score=87.10  Aligned_cols=282  Identities=11%  Similarity=0.158  Sum_probs=159.7

Q ss_pred             CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001362          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      .+.|.++.|.-++.. +..+..+|.|.+-|.++.....                    ...-...|.+++||||++.++.
T Consensus        68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l  126 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL  126 (1265)
T ss_pred             CcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence            469999999999975 5667788999999988876554                    2234579999999999999999


Q ss_pred             EeCCCEEEEEEccCCCcccceEEEc---ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-eEEEecCCcCeE
Q 001362          414 AYSKHIVQLYAYHGGSDARQQLEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVY  489 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~~~---~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~  489 (1092)
                      .+..+++.+-+-.- ..+... .+.   ...+....+-|-....+   +.|+ .|....-+....+. +....-+ ..=+
T Consensus       127 iT~~~tll~mT~~f-~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~~~-~~~~  199 (1265)
T KOG1920|consen  127 ITGRQTLLFMTKDF-EPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIEQD-DHKT  199 (1265)
T ss_pred             EeCCcEEEEEeccc-cchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchhhc-cCCc
Confidence            99888776644321 111100 010   00111222333322221   1111 11111111000000 0000111 1223


Q ss_pred             EEeecccCCccEEEEE-----ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001362          490 SLCPHAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       490 ~~~~~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      +++|  .+||+++++.     .....|++||-+ +.....-....+--.+++|-|.|..+++.....+ +..|.++..+ 
T Consensus       200 ~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN-  274 (1265)
T KOG1920|consen  200 SISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN-  274 (1265)
T ss_pred             eEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC-
Confidence            4566  6688888873     333789999876 3333333333334567999999999988775544 5568888743 


Q ss_pred             CeEEEEEeecc-ccCCceEEEEEcCCCCEEEE---EeCCCcEEEEECCCCceE--EEEeCCCCCCCCceEEEccC-CCEE
Q 001362          565 GAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILA---AGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKN-GTLL  637 (1092)
Q Consensus       565 ~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~---~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~-~~~l  637 (1092)
                      |-.-..|.-.. .....+..++|+.++..|++   ......|++|-..+....  +.+.....    .-+-|+|. ...+
T Consensus       275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L  350 (1265)
T KOG1920|consen  275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTL  350 (1265)
T ss_pred             CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeE
Confidence            33323222111 11134899999999998887   445556999998876543  23332222    22778883 2334


Q ss_pred             EEEeCCCeEEEEECC
Q 001362          638 AVIANENRIKILETP  652 (1092)
Q Consensus       638 ~~~~~dg~i~iw~~~  652 (1092)
                      .+-..+|...+++..
T Consensus       351 ~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  351 HVLRESGQRLVRDFA  365 (1265)
T ss_pred             EEEecCCcEEEEEEE
Confidence            444466666665543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.38  E-value=0.00082  Score=65.43  Aligned_cols=115  Identities=15%  Similarity=0.120  Sum_probs=81.2

Q ss_pred             ecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEE
Q 001362          342 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ  421 (1092)
Q Consensus       342 ~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~  421 (1092)
                      .-+|.+.++..|+..+.+.--|..+|+..-...                    -...|.+-+.- -|++++.|...|.++
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i--------------------lg~RiE~sa~v-vgdfVV~GCy~g~lY   76 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--------------------LGVRIECSAIV-VGDFVVLGCYSGGLY   76 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeehh--------------------hCceeeeeeEE-ECCEEEEEEccCcEE
Confidence            345556789999999999999999998775311                    11223222222 477899999999999


Q ss_pred             EEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001362          422 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       422 iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      +-+.++|+.......+..-  .+ .....+++.  ++..|+.|++.+.-|..+..+++..+
T Consensus        77 fl~~~tGs~~w~f~~~~~v--k~-~a~~d~~~g--lIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   77 FLCVKTGSQIWNFVILETV--KV-RAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             EEEecchhheeeeeehhhh--cc-ceEEcCCCc--eEEEecCCCcEEEecccccceEEecc
Confidence            9999999766543222211  11 234456777  89999999999999999988887654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=4.5e-05  Score=78.59  Aligned_cols=251  Identities=13%  Similarity=0.156  Sum_probs=146.5

Q ss_pred             eecCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001362          391 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  469 (1092)
                      ++.+|...|..++|||..+ +|..++.+..|+|.|+++.....   .+..| ..+++++|.-|... ++..|-..|.|.|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV  262 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence            5788999999999999877 78888999999999999976554   44456 68999999999877 7889999999999


Q ss_pred             EECCCCce-eEEEec--CCcCeEEEeeccc----CCccEEEEEecCCeEEEEEcCCCCc--eEEec-CCCCceEEEEEcc
Q 001362          470 WDAVTGSR-TYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA--RVDYD-APGLGCTRMAYSA  539 (1092)
Q Consensus       470 wd~~~~~~-~~~~~~--~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~-~~~~~i~~~~~s~  539 (1092)
                      ||++..+- +..+.+  ...+|..++..+.    +.+.+++..+.+  +..|.+.-...  ..... ...+.+.++.+.+
T Consensus       263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~  340 (463)
T KOG1645|consen  263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG  340 (463)
T ss_pred             EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence            99986542 233322  2334444432211    122344444333  34455433222  12122 2234556666666


Q ss_pred             CCCEEEEEecCCCCceeEE----EEeCCCCeEEEEEe----eccc-cCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCC
Q 001362          540 NGRRLFSCGTSKEGESFLV----EWNESEGAIKRTYQ----GLQL-QHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK  609 (1092)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~----~~~~-~~~~v~~~~~~p~~~~l~~-~s~dg~i~iwd~~~  609 (1092)
                      -.+.++.....+...-+++    --|-.+|..+..-+    |... ....-..+.-.+++++++. +...+.+.+||..+
T Consensus       341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s  420 (463)
T KOG1645|consen  341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS  420 (463)
T ss_pred             ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence            5566665544321111111    11222332221111    1000 0001112222345566655 55678899999999


Q ss_pred             CceEEEEeCCCCCCCCceEEEcc-C-CCEEEEEeCCCeEEEEECC
Q 001362          610 VQLLTTIDAGGGLPENPRICFNK-N-GTLLAVIANENRIKILETP  652 (1092)
Q Consensus       610 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~~~~~dg~i~iw~~~  652 (1092)
                      ++.++++....   .|..++... + +.+|++-++ ..++||..+
T Consensus       421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LTd-~~v~Iyk~e  461 (463)
T KOG1645|consen  421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLTD-DRVHIYKNE  461 (463)
T ss_pred             hheeeecccCc---ceeecceeecCCcchhhheec-ceEEEEecC
Confidence            99999998763   355555443 2 446665554 578887654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.35  E-value=9.7e-05  Score=82.02  Aligned_cols=138  Identities=10%  Similarity=0.071  Sum_probs=101.0

Q ss_pred             CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..|.--+++..++ +++.|+.-|.+.+++-.+|+.+...                  ..+-.+.+..+..|++..++|.|
T Consensus        34 ~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvAag   94 (726)
T KOG3621|consen   34 ARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVAAG   94 (726)
T ss_pred             ceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhhhh
Confidence            3666677788888 5899999999999999888766421                  22345667778899999999999


Q ss_pred             eCCCEEEEEEccCCCcccceEE---EcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC----ceeEEEecCCcC
Q 001362          415 YSKHIVQLYAYHGGSDARQQLE---IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHGAP  487 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~  487 (1092)
                      +..|.|.++-+..+..-.....   -..|...|++++|++|+.  .+++|...|+|..-.+.+.    ...+.+......
T Consensus        95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~  172 (726)
T KOG3621|consen   95 TASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSE  172 (726)
T ss_pred             cCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCcc
Confidence            9999999999887433222111   123778999999999999  7999999999999887772    112333334556


Q ss_pred             eEEEee
Q 001362          488 VYSLCP  493 (1092)
Q Consensus       488 v~~~~~  493 (1092)
                      |..+..
T Consensus       173 IVQlD~  178 (726)
T KOG3621|consen  173 IVQLDY  178 (726)
T ss_pred             eEEeec
Confidence            666654

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.35  E-value=0.0018  Score=69.03  Aligned_cols=279  Identities=13%  Similarity=0.125  Sum_probs=139.7

Q ss_pred             EeecCCCceEEEEEcCCCc--EEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC-CcEEEEEECCCCCEEEEEeC
Q 001362          340 MDFHPVQHTLLLVGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYS  416 (1092)
Q Consensus       340 v~~spdg~~llasg~~d~~--v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~las~~~  416 (1092)
                      =+|.+||++||.++..||.  +.+-|+.+++..+                    |+... .......++|+++.++....
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~  100 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN  100 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence            3789999988888887765  6666888887664                    33332 22224677899999887766


Q ss_pred             CCEEEEEEccCCCcccceEEEcccccceeEEEEe--cCCCcEEEEEEe----------------------CCCcEEEEEC
Q 001362          417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCG----------------------DDKTIKVWDA  472 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s--~d~~~l~l~s~~----------------------~d~~i~vwd~  472 (1092)
                      ...|+--|+.+.+.. .  .+......+-...|.  .|+.  .++..-                      ..+.|.--|+
T Consensus       101 ~~~l~~vdL~T~e~~-~--vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl  175 (386)
T PF14583_consen  101 GRSLRRVDLDTLEER-V--VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL  175 (386)
T ss_dssp             TTEEEEEETTT--EE-E--EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred             CCeEEEEECCcCcEE-E--EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence            678888899887532 2  233344444445553  4555  333221                      1234666688


Q ss_pred             CCCceeEEEecCCcCeEEEeecccCCccEEEEEec---CCe-EEEEEcCCCCce-EEecC--CCCceEEEEEccCCCEEE
Q 001362          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGK-IKAWLYDSLGAR-VDYDA--PGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~-i~vwd~~~~~~~-~~~~~--~~~~i~~~~~s~dg~~l~  545 (1092)
                      .+|+....+. -...+..+.|+|... .+|+-|-.   +.. -|+|-+++.... ..+..  ....+..=-|.|||..+.
T Consensus       176 ~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~  253 (386)
T PF14583_consen  176 KTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW  253 (386)
T ss_dssp             TT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred             CCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence            8887654443 556777888877532 34444322   221 366765543322 22221  222445556899999887


Q ss_pred             EEec-CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC----------------CcEEEEECC
Q 001362          546 SCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----------------HVIKIWDMN  608 (1092)
Q Consensus       546 ~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~d----------------g~i~iwd~~  608 (1092)
                      ..+. .+..+..|.-+|+.+++.......     .......-++|++.++-=+.|                .-|++++++
T Consensus       254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~  328 (386)
T PF14583_consen  254 YDSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE  328 (386)
T ss_dssp             EEEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred             EEeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence            6544 344467888899998876543332     234455667888877663322                246778888


Q ss_pred             CCceEEEEeCC--------CCCCCCceEEEccCCCEEEEEeC-CCeEEEEE
Q 001362          609 KVQLLTTIDAG--------GGLPENPRICFNKNGTLLAVIAN-ENRIKILE  650 (1092)
Q Consensus       609 ~~~~~~~~~~~--------~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~  650 (1092)
                      .+.........        .....-....|+|||++++..++ .|...||-
T Consensus       329 ~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  329 AGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             TTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             cCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence            77654322211        00112357899999999887765 56655553

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.35  E-value=1.3e-06  Score=87.59  Aligned_cols=151  Identities=15%  Similarity=0.156  Sum_probs=113.0

Q ss_pred             EEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc-----eeeEeeccccCCeEE
Q 001362          817 LFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-----EVISKLEGHSKRVTG  891 (1092)
Q Consensus       817 l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-----~~~~~l~~h~~~V~~  891 (1092)
                      +++|.+-.+-+-|+++|-. +.|. ..+.|.++.|.. .+.++..|+.+|.|..+|++.+     .+...+. |...|++
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence            4455567788889887643 3343 567888999987 7889999999999999999874     4555665 9999999


Q ss_pred             EEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCcee
Q 001362          892 LVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC  969 (1092)
Q Consensus       892 l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~  969 (1092)
                      +..-. ++++|.+.+.+|+|++||+..-+...  -+...+||......+ -+...+....+++ |.|-..+||.+..|..
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~--~V~qYeGHvN~~a~l-~~~v~~eeg~I~s~GdDcytRiWsl~~ghL  380 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKK--SVMQYEGHVNLSAYL-PAHVKEEEGSIFSVGDDCYTRIWSLDSGHL  380 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhccc--ceeeeeccccccccc-ccccccccceEEEccCeeEEEEEecccCce
Confidence            88776 78899999999999999998744222  477778876532222 2334555555655 7888999999999998


Q ss_pred             eeeec
Q 001362          970 LKQWF  974 (1092)
Q Consensus       970 ~~~~~  974 (1092)
                      +.+..
T Consensus       381 l~tip  385 (425)
T KOG2695|consen  381 LCTIP  385 (425)
T ss_pred             eeccC
Confidence            88754

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.32  E-value=0.00048  Score=76.38  Aligned_cols=303  Identities=12%  Similarity=0.100  Sum_probs=155.5

Q ss_pred             ccCCCEEEEEecCC-----CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001362          538 SANGRRLFSCGTSK-----EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL  612 (1092)
Q Consensus       538 s~dg~~l~~~~~~~-----~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~  612 (1092)
                      |||+++++......     +..+.++++|+.+++....... .   ..+....|+|+|+.++... ++.|++++..++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence            57888777643211     1245689999999877655554 2   5788889999999988886 57899999888744


Q ss_pred             EEEEeCCCC----------------CCCCceEEEccCCCEEEEEeCC-CeEEEEECC---CCceeeecccccCceeeeee
Q 001362          613 LTTIDAGGG----------------LPENPRICFNKNGTLLAVIANE-NRIKILETP---ESNSVDAAGVLSDNLRKLSV  672 (1092)
Q Consensus       613 ~~~~~~~~~----------------~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~~---~~~~~~~~~~~~~~v~~~~~  672 (1092)
                      .+ +...+.                ...-..+.||||+++|+....| ..+..+.+.   ....      ....+..+.+
T Consensus        76 ~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~Y  148 (353)
T PF00930_consen   76 TQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRY  148 (353)
T ss_dssp             EE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE-
T ss_pred             EE-eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCccccccc
Confidence            33 322220                1223578999999999887553 333333221   1110      0001111111


Q ss_pred             cCCCccccccccCCceeecCCCCCCCccceeeccccc--cceeccccccCccccccccC--CccccccEEEEEEecCCcE
Q 001362          673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK--SEVEKPLFARPSECQSLLLP--SKVKANKISRLTYNNGGQA  748 (1092)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~--i~lw~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~g~~  748 (1092)
                      .                            ..|...-.  +.++++..++..   .+..+  .......+..+.|.++++.
T Consensus       149 P----------------------------k~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~  197 (353)
T PF00930_consen  149 P----------------------------KAGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKR  197 (353)
T ss_dssp             -----------------------------BTTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEE
T ss_pred             C----------------------------CCCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcE
Confidence            1                            11111112  233443322221   11111  0124567889999999984


Q ss_pred             EEEeecC---CeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe-cCCCEEEEEe--C
Q 001362          749 IFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--G  822 (1092)
Q Consensus       749 l~~~~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s-~dg~~l~~~s--d  822 (1092)
                      ++..-.+   ..+.+..                    +|+.++.+.........+--.......+. +++..++..+  +
T Consensus       198 l~~~~~nR~q~~~~l~~--------------------~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~  257 (353)
T PF00930_consen  198 LWVQWLNRDQNRLDLVL--------------------CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD  257 (353)
T ss_dssp             EEEEEEETTSTEEEEEE--------------------EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred             EEEEEcccCCCEEEEEE--------------------EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence            4444332   2233322                    23333332222111111111222355555 7776666665  4


Q ss_pred             C--eEEEEEcCCceeeEEecCCCCCeEE-EEEcCCCCCEEEEEeCCC----cEEEEEcCCceeeEeeccccCCeEEEEEc
Q 001362          823 G--VISLYIVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFS  895 (1092)
Q Consensus       823 g--~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s  895 (1092)
                      |  .|.+++...+. ...+....-.|+. +.++++++.+.+++..++    .++.-++.++..+..+....+.-..+.||
T Consensus       258 G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S  336 (353)
T PF00930_consen  258 GYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS  336 (353)
T ss_dssp             SSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred             CCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence            4  47777777665 3455545556744 678884455555666533    56666666234455555443333689999


Q ss_pred             CCCCEEEEE
Q 001362          896 DALNILVSS  904 (1092)
Q Consensus       896 pdg~~l~s~  904 (1092)
                      |+|++++-.
T Consensus       337 pdg~y~v~~  345 (353)
T PF00930_consen  337 PDGKYYVDT  345 (353)
T ss_dssp             TTSSEEEEE
T ss_pred             CCCCEEEEE
Confidence            999998754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=6e-06  Score=84.11  Aligned_cols=168  Identities=17%  Similarity=0.250  Sum_probs=117.2

Q ss_pred             hHHHHHHHHHhhhhcChhHHHHHHHHhcCCC--------hhHHHHHHHhcCcCHHHHHHHhccC-CCcCCccccchhhhH
Q 001362            5 NKDLVFLILQFLNEEGFTESAHMLERESRFY--------FDMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFE   75 (1092)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~l~~Es~~~--------~~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~   75 (1092)
                      +.-+-|+|+.||..+||.++|..|-++|.+.        .++..++++|++|+...|+...+.- ..+.  +..-.+-|.
T Consensus       115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~  192 (389)
T KOG0396|consen  115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQ  192 (389)
T ss_pred             HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhH
Confidence            4457899999999999999999999999875        2478889999999999998887542 1122  112236799


Q ss_pred             hHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccC
Q 001362           76 IRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEAN  155 (1092)
Q Consensus        76 l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~  155 (1092)
                      +..|.|+||+..+++.+|+.+.++.+.|........++....++.+....+..   .+.+.....|=   +.|+.++..+
T Consensus       193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~s---ky~~l~~~~rw---~~l~~lF~s~  266 (389)
T KOG0396|consen  193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSS---KYLNLLTADRW---SVLADLFLSE  266 (389)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCcc---cccCcccHHHH---HHHHHHhhHH
Confidence            99999999999999999999999999999877788888888888876543222   11122222332   3333332222


Q ss_pred             cccccccCCCCCccHHHHHHHHHHHHHHH
Q 001362          156 PILQGKLKFPSIKRQRLRRLINQSLNWQH  184 (1092)
Q Consensus       156 ~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~  184 (1092)
                      ..  ....+|+-|  +|..+|+--+..|.
T Consensus       267 a~--~l~~i~~~~--~L~~~l~~GLsalK  291 (389)
T KOG0396|consen  267 AL--KLFGIPINP--ALTIYLQAGLSALK  291 (389)
T ss_pred             HH--HHhCCCCCc--HHHHHHHhhhhhcc
Confidence            11  112223222  48888887777764

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=7.5e-05  Score=76.98  Aligned_cols=250  Identities=12%  Similarity=0.098  Sum_probs=140.6

Q ss_pred             eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001362          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      .+.|.+|...|..++|||..+=|+..++.+..|+|.|+++...+..                   +..| ..+.+++|.-
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDl  245 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDL  245 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeecc
Confidence            4577889889999999998876788999999999999999877764                   3334 7899999998


Q ss_pred             CC-CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEE------ecCCCcEEEEEEeCCCcEEEEECCC--Cce
Q 001362          407 DG-SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAPCKQISVITCGDDKTIKVWDAVT--GSR  477 (1092)
Q Consensus       407 dg-~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~------s~d~~~l~l~s~~~d~~i~vwd~~~--~~~  477 (1092)
                      |. .+|..|...|.|.|||+...+.......-.-...+|..++.      .+-|.  +++....+  +..|++.-  +..
T Consensus       246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~  321 (463)
T KOG1645|consen  246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECL  321 (463)
T ss_pred             CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCC
Confidence            65 56667778999999999865432211111112234444333      23343  34444333  45665432  111


Q ss_pred             eEEEe-cCCcCeEEEeecccCCccEEEEEecCCe---EE---E-EEcCCCCceEEe-cCC-CC------ceEEEEEccCC
Q 001362          478 TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGK---IK---A-WLYDSLGARVDY-DAP-GL------GCTRMAYSANG  541 (1092)
Q Consensus       478 ~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~---i~---v-wd~~~~~~~~~~-~~~-~~------~i~~~~~s~dg  541 (1092)
                      ...+. +..+...++...+..+ +.|++.-.+.+   ++   . -|...+..+... ..+ +.      .-..+.-.++.
T Consensus       322 p~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n  400 (463)
T KOG1645|consen  322 PCVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN  400 (463)
T ss_pred             CcccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence            22111 2234455555544322 34444433211   00   0 011111111100 000 00      01122224566


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 001362          542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMN  608 (1092)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~s~dg~i~iwd~~  608 (1092)
                      ++++..+.   ..+.+.+||+.+++.++++....    +|..++... ++.-++..-.|..++||..+
T Consensus       401 n~iv~~gd---~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  401 NYIVVVGD---STNELILQDPHSFEVVQTLALSE----PVLDICPNDTNGSSYLALLTDDRVHIYKNE  461 (463)
T ss_pred             cEEEEecC---CcceeEEeccchhheeeecccCc----ceeecceeecCCcchhhheecceEEEEecC
Confidence            66665543   46779999999999999887643    666665432 33334444445668887654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=3.9e-05  Score=86.15  Aligned_cols=188  Identities=12%  Similarity=0.108  Sum_probs=129.8

Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001362          844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC  923 (1092)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~  923 (1092)
                      ..++|++++   +++++-|+.+|.|++++... .. .+...|+..      ..+|.+++|||.||+|.|-.+.+.+....
T Consensus        40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            456788885   47999999999999999874 33 344446554      56899999999999999999888653332


Q ss_pred             eeeecCCCCcCCCCCceEEEEecC-----CCEEEEEeCCcEEEEEcCC-ceeeeeeccCCCCCEEEEEEecCCCEEEEEE
Q 001362          924 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       924 ~~~~~~~~~~~~~~~v~~l~~s~d-----g~~la~~~d~~i~lwd~~~-~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~  997 (1092)
                      .-++         .++.+++++||     .+.+++|+...+.++.-.= |.........-.++|.++.|  .|.++|=++
T Consensus       109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan  177 (846)
T KOG2066|consen  109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN  177 (846)
T ss_pred             EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence            2222         25889999998     4566665443377775431 11111123334789999998  477888887


Q ss_pred             CCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001362          998 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus       998 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      .+| |+|||+.++..+..+.+....+.    ....+..+.|.+  ...|+.| ...+|++..+.
T Consensus       178 d~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  178 DDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQD--EDRLVIG-WGDSVKICSIK  233 (846)
T ss_pred             CCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecC--CCeEEEe-cCCeEEEEEEe
Confidence            665 89999999999888775442222    234556678886  4566665 66788888887

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=0.00019  Score=81.41  Aligned_cols=206  Identities=15%  Similarity=0.170  Sum_probs=132.7

Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCC-eEEEEEcCCCCEEEEEeCCCc-----EEEEEcCCCceee-
Q 001362          850 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQT-  922 (1092)
Q Consensus       850 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s~s~Dg~-----i~iwd~~~~~~~~-  922 (1092)
                      ++++ ++..+|.|+.+|.|.+.+-. -+.+..++++... |+.+-...+..+|++.+.|+.     |+||+++..+... 
T Consensus        30 c~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcC-CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            4566 67799999999999888643 3445777777766 555555445579999988765     8999998653333 


Q ss_pred             eeee---ecCC-CCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcC----CceeeeeeccCCCCCEEEEEEecCCCEE
Q 001362          923 CRSL---QTPD-GVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE----ELTCLKQWFPISSVPISQATFSCDCRMV  993 (1092)
Q Consensus       923 ~~~~---~~~~-~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~----~~~~~~~~~~~h~~~v~~l~fs~dg~~l  993 (1092)
                      ..++   .... .......++.+++.|.+-+.+|+| .+|.|..+.-+    .|.... ....-..+|+.++|..|++.+
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~-~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD-YSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee-eeccCCCCceeeEEecCCcee
Confidence            3333   2211 111112468999999999999997 77888888532    111111 111237899999999999874


Q ss_pred             EEEECCCcEEEEEcCCCce-EEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCccccC
Q 001362          994 FTSFVDGTLSIHEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1070 (1092)
Q Consensus       994 ~t~~~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~ 1070 (1092)
                      +.+..-..|.+|.+.+... .+...      .  ++  +..-|.++++.. ..|++++ +..|.+|+..+.++.|+..
T Consensus       187 lFv~Tt~~V~~y~l~gr~p~~~~ld------~--~G--~~lnCss~~~~t-~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  187 LFVATTEQVMLYSLSGRTPSLKVLD------N--NG--ISLNCSSFSDGT-YQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             EEEEecceeEEEEecCCCcceeeec------c--CC--ccceeeecCCCC-ccEEEec-CceEEEEcCCCcceeeeec
Confidence            4344456799999984331 21122      1  12  333467787632 2355553 5578999999999888654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=0.00039  Score=79.00  Aligned_cols=202  Identities=11%  Similarity=0.114  Sum_probs=136.4

Q ss_pred             EEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCC-eEEEEEcCCCCCEEEEEeCCC-----cEEEEEcCCc----
Q 001362          808 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDS-----TILIYNARSS----  876 (1092)
Q Consensus       808 ~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~----  876 (1092)
                      -++++.+..++.|+ +|.|.+.+- ..+.++.++.+... |+.+-... +..+|++.+.|+     .++||+++.-    
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            35678888888887 788888774 34555777777766 44444443 557888877776     4899998643    


Q ss_pred             --eee--Eeecc-----ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC
Q 001362          877 --EVI--SKLEG-----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1092)
Q Consensus       877 --~~~--~~l~~-----h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  947 (1092)
                        .++  .++..     ...++.+++.|.+-+.+|.|-.+|.|..+.-+--..+..+..-...+.    .+|+.+++..|
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d  182 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD  182 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence              233  12222     346788999999999999999999998885442221112222222232    36999999999


Q ss_pred             CCE-EEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEee
Q 001362          948 QTR-FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       948 g~~-la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
                      ++. +.++.-..|.+|.+....+.......|+....|..|++-...+++++ +..+.+|+.+.......|
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF  251 (933)
T ss_pred             CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence            988 45567788999999844433444666788999999887555355554 457999998855544333

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.10  E-value=0.0036  Score=72.64  Aligned_cols=138  Identities=12%  Similarity=0.110  Sum_probs=80.2

Q ss_pred             cEEEEEecCCeEEEEEcCCCCceEEecCCCC------ceE--EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001362          500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGL------GCT--RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1092)
Q Consensus       500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------~i~--~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1092)
                      ..++.++.++.+.-.|..+++..........      .+.  .+++. ++..++.+..    ++.|+-+|..+|+.+-.+
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence            3677777788888889888887766544332      000  11111 2245555543    567999999999988776


Q ss_pred             eecccc--CCceE-EEEEcCCCCEEEEEe---------CCCcEEEEECCCCceEEEEeCCCCCC----------------
Q 001362          572 QGLQLQ--HNSVS-VVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLP----------------  623 (1092)
Q Consensus       572 ~~~~~~--~~~v~-~~~~~p~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~----------------  623 (1092)
                      ......  ...+. ...+.  +..++.++         .+|.++.+|..+|+.+..........                
T Consensus       137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  214 (488)
T cd00216         137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG  214 (488)
T ss_pred             cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence            643300  00011 11122  24455554         36789999999999988775431100                


Q ss_pred             --CC-ceEEEccCCCEEEEEeCCC
Q 001362          624 --EN-PRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       624 --~v-~~v~~s~~~~~l~~~~~dg  644 (1092)
                        .+ ...++.+.+..+++++.++
T Consensus       215 g~~vw~~pa~d~~~g~V~vg~~~g  238 (488)
T cd00216         215 GGTSWASPTYDPKTNLVYVGTGNG  238 (488)
T ss_pred             CCCccCCeeEeCCCCEEEEECCCC
Confidence              01 1345555567777777665

The alignment model contains an 8-bladed beta-propeller.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.10  E-value=6.2e-05  Score=85.47  Aligned_cols=186  Identities=14%  Similarity=0.117  Sum_probs=142.4

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001362          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  536 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~  536 (1092)
                      .++.|+....+..+|+.+.+..+...-....|.-++.    +++.+.+|...|+|.+-|.++.+.+.++..|.+.+.  .
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--D  222 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--D  222 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeecccccee--e
Confidence            5778888888999999999888777655555766654    668999999999999999999999999999998885  4


Q ss_pred             EccCCCEEEEEecCCC-----CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCC-
Q 001362          537 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK-  609 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~s~dg~i~iwd~~~-  609 (1092)
                      |+-.|+.|++||.+..     .|..|.+||+++.+.+..+.-+.   ++ .-+.|.|. ...+++++..|...+-|..+ 
T Consensus       223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l  298 (1118)
T KOG1275|consen  223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL  298 (1118)
T ss_pred             eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---Cc-hhhhhcccccceEEEEecccceeecccccc
Confidence            5667999999987553     35678999999888776665544   22 45667776 35677888899999988432 


Q ss_pred             Cce-EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001362          610 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       610 ~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      +.+ ......+...+.+..++++++|+.++.|..+|.|.+|.-.
T Consensus       299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence            111 1222222223458899999999999999999999999844

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.09  E-value=0.0008  Score=78.44  Aligned_cols=222  Identities=14%  Similarity=0.085  Sum_probs=121.6

Q ss_pred             CCeEEEEEcCCCCCEEEEEe------CCC--cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC-CcEEEEE
Q 001362          844 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWD  914 (1092)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D-g~i~iwd  914 (1092)
                      ..+.+.++|| +++.+|...      .|+  .+.+++.. +.......+.  ..+.-.|+|||+.|++.+.. ..+++.+
T Consensus       350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence            4678999999 777776655      244  45555542 3332223332  37889999999988887543 2233332


Q ss_pred             cCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEE---EEcCCceeee----eeccCCCCCEEEEEEe
Q 001362          915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTCLK----QWFPISSVPISQATFS  987 (1092)
Q Consensus       915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~l---wd~~~~~~~~----~~~~~h~~~v~~l~fs  987 (1092)
                      -..........+..........+.|..+.|||||..+|...+++|++   -....|+...    .+..+-...+.++.|.
T Consensus       426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~  505 (591)
T PRK13616        426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR  505 (591)
T ss_pred             cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence            21111000000100000001123699999999999999966788887   4444554111    1122224446889999


Q ss_pred             cCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 001362          988 CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1067 (1092)
Q Consensus       988 ~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~ 1067 (1092)
                      .+++++ ++..++...+|.+.-.-..........+.     .+  ..+++-.|   ..+.++..+|.+.+=.-......|
T Consensus       506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~-----~~--v~~vaa~~---~~iyv~~~~g~~~l~~~~~~~~~W  574 (591)
T PRK13616        506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLS-----AP--VVAVAASP---STVYVTDARAVLQLPNSDSGDQYW  574 (591)
T ss_pred             cCCEEE-EEecCCCCceEEEecCCccccccCCCCcc-----Cc--eEEEecCC---ceEEEEcCCceEEecCCCCCCCCc
Confidence            999855 55555555566654332221111111111     11  24566665   356777777765555444556678


Q ss_pred             ccCCCCCcccCCC
Q 001362         1068 AVLPPDEIVGDQP 1080 (1092)
Q Consensus      1068 ~~~~~~~~~~~~~ 1080 (1092)
                      ...|+..-.+..|
T Consensus       575 ~ev~~l~g~~~~p  587 (591)
T PRK13616        575 REVPGLMGPRAAP  587 (591)
T ss_pred             eECccccCCCccc
Confidence            8888776555444

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.00032  Score=79.11  Aligned_cols=186  Identities=13%  Similarity=0.142  Sum_probs=124.3

Q ss_pred             cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001362          736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1092)
Q Consensus       736 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~  815 (1092)
                      .+.+.+++  ++.++.|+.+|.+++++.+....                        +. +   .|...      ..+|.
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~------------------------~~-~---~~s~~------~~~Ge   84 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNPK------------------------TN-F---DHSSS------ILEGE   84 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCCccc------------------------cc-c---ccccc------ccCCc
Confidence            34444443  46688888999999987654310                        00 0   02211      55899


Q ss_pred             EEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC----CCCEEEEEeCCCcEEEEEcCCc--eeeEeeccccCC
Q 001362          816 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKR  888 (1092)
Q Consensus       816 ~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~  888 (1092)
                      ++++++ ||+|.|-.+.+.+...++. ...++.+++++|+    ..+.+++|+.-| +.++.-.=-  +.-..+..-.++
T Consensus        85 y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~  162 (846)
T KOG2066|consen   85 YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP  162 (846)
T ss_pred             eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence            999999 6999999998888777665 4578999999993    256888899888 777753321  111234556789


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcC
Q 001362          889 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE  965 (1092)
Q Consensus       889 V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~  965 (1092)
                      |.++.|.  |+++|-++.+| |+|||+..+....  .++.+............+.|.++.+ |+.|...+|+|..+.
T Consensus       163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK  233 (846)
T ss_pred             eEEEEec--CcEEEEecCCC-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence            9999995  88999999888 9999999865433  2222222222112345667766655 566777788888877

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.02  E-value=0.03  Score=65.14  Aligned_cols=61  Identities=13%  Similarity=0.148  Sum_probs=43.3

Q ss_pred             CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccc
Q 001362          823 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH  885 (1092)
Q Consensus       823 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h  885 (1092)
                      |.+.-+|+.+++..-+..............  .+.+++.++.+|.++.+|.++|+.+...+-.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            568888999998887765333222222222  3447777888999999999999999887643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>smart00668 CTLH C-terminal to LisH motif

Probab=97.99  E-value=3.8e-06  Score=64.72  Aligned_cols=53  Identities=34%  Similarity=0.595  Sum_probs=42.2

Q ss_pred             hHHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCCCH
Q 001362           37 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI   90 (1092)
Q Consensus        37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~   90 (1092)
                      ++..++++|+.|+|+.|++.++..........+ .+.|.|++|+|+||++.++.
T Consensus         4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence            478899999999999999999887332222222 49999999999999998764

Alpha-helical motif of unknown function.

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=97.95  E-value=1.3e-05  Score=49.28  Aligned_cols=27  Identities=33%  Similarity=0.642  Sum_probs=24.6

Q ss_pred             HHHHHHHHHhhhhcChhHHHHHHHHhc
Q 001362            6 KDLVFLILQFLNEEGFTESAHMLERES   32 (1092)
Q Consensus         6 ~~~~~li~q~L~~~g~~~s~~~l~~Es   32 (1092)
                      +++.+||++||.+.||.+||.+|.+||
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            578999999999999999999999996

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.94  E-value=0.00076  Score=75.20  Aligned_cols=197  Identities=18%  Similarity=0.149  Sum_probs=118.5

Q ss_pred             cceeeecccCCCCceEEeecCCCceEEEEEcCC---CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE
Q 001362          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  400 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d---~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~  400 (1092)
                      ....+.+..-...+..-+|+|+++.+....-..   ..+.++|+++++.....+                    -.+.-.
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~  241 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNG  241 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccC
Confidence            344555665566888899999998644442222   359999999988765432                    223344


Q ss_pred             EEEECCCCCEEEEEe-CCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc--EEEEECCCC
Q 001362          401 RVVWSPDGSLLGVAY-SKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTG  475 (1092)
Q Consensus       401 ~l~~spdg~~las~~-~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~  475 (1092)
                      ..+|||||++||.+. .||  .|.+.|+.++...    .+..-.+.-+.=.|+|||++ ++.+.+..|.  |.+.|++.+
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~----~Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP----RLTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCcce----ecccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence            578999999998774 444  4777788776522    23333333446789999997 3444555554  556676665


Q ss_pred             ceeEEEecCCcCeEEEeecccCCccEEEEEecC-Ce--EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001362          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      .. ..+......-.  ....++||.+++..+.. |.  |.+.|+.+... ..............+.++|+.+...+.
T Consensus       317 ~~-~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         317 QV-TRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             ce-eEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence            54 33322221111  22336688888777643 44  55556555553 222222233445678889988887654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.93  E-value=0.014  Score=66.68  Aligned_cols=252  Identities=14%  Similarity=0.084  Sum_probs=137.6

Q ss_pred             CceEEeecCCCceEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~----~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      .+...++||||++++.+-+..|    .+++.|+.+|+.+.. .+                 ..  ..-..++|.+|++.|
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~  184 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGF  184 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEE
Confidence            3446789999997665555544    499999999976643 11                 11  112239999999988


Q ss_pred             EEEeCC-----------CEEEEEEccCCCcccceEEEcccccc--eeEEEEecCCCcEEEEEEeCC--CcEEEEECCCC-
Q 001362          412 GVAYSK-----------HIVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGDD--KTIKVWDAVTG-  475 (1092)
Q Consensus       412 as~~~d-----------~~i~iwd~~~~~~~~~~~~~~~h~~~--v~~~~~s~d~~~l~l~s~~~d--~~i~vwd~~~~-  475 (1092)
                      +....+           ..|+.|++.++..-. ...+.+....  ...+..++|++++++.+.+..  ..+.+-|...+ 
T Consensus       185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~  263 (414)
T PF02897_consen  185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG  263 (414)
T ss_dssp             EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred             EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence            776432           247777877654321 1234443333  567889999996333333322  35778888775 


Q ss_pred             ---ceeEEEecCCcCeE-EEeecccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCCCCceEEEEEccCCCEEE
Q 001362          476 ---SRTYSFEGHGAPVY-SLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       476 ---~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                         .....+......+. .+...   ++.+++...   ..+.|...++.....   ...+..+...+.-..+...+.+|+
T Consensus       264 ~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv  340 (414)
T PF02897_consen  264 SPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV  340 (414)
T ss_dssp             TSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred             CCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence               23344433333333 33321   223443332   335677777777663   224444444333333444566666


Q ss_pred             EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE--Ee--CCCcEEEEECCCCceEE
Q 001362          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AG--DDHVIKIWDMNKVQLLT  614 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~--~s--~dg~i~iwd~~~~~~~~  614 (1092)
                      .... .++...|++++...+.....+....  .+.|..+...++++.+..  .|  .-++++.||+.+++...
T Consensus       341 l~~~-~~~~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~  410 (414)
T PF02897_consen  341 LSYR-ENGSSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL  410 (414)
T ss_dssp             EEEE-ETTEEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred             EEEE-ECCccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence            5543 2457789999998445444444433  355666665666655543  22  33578888888877543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.93  E-value=0.0029  Score=69.87  Aligned_cols=244  Identities=13%  Similarity=0.158  Sum_probs=131.8

Q ss_pred             cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001362          736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1092)
Q Consensus       736 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~  815 (1092)
                      .|..+.|+++...++++...|.+.+|.+..++........                            .-..+.+.+-  
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~----------------------------~~~~~~~~~~--   52 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQP----------------------------PDLDYNFRRF--   52 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------------------------------S---
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCC----------------------------cccCcccccc--
Confidence            4788999999889999999999999998765432100000                            0000000000  


Q ss_pred             EEEEEeCCeEEEEEcCC---------ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe--ecc
Q 001362          816 YLFSASGGVISLYIVMT---------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEG  884 (1092)
Q Consensus       816 ~l~~~sdg~i~iwd~~~---------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l~~  884 (1092)
                         ...++.-.+-|+..         ......+....+.|++++.|.  =-++|+|..+|.+.|.|++....+..  +..
T Consensus        53 ---~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~  127 (395)
T PF08596_consen   53 ---SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRE  127 (395)
T ss_dssp             ----GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred             ---cccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccc
Confidence               00000111112111         122333444578999999984  44999999999999999987776644  222


Q ss_pred             ------ccCCeEEEEEcC-----CC---CEEEEEeCCCcEEEEEcCC--CceeeeeeeecCCCCcCCCCCceEEE-EecC
Q 001362          885 ------HSKRVTGLVFSD-----AL---NILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQ-FHKD  947 (1092)
Q Consensus       885 ------h~~~V~~l~~sp-----dg---~~l~s~s~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~-~s~d  947 (1092)
                            ....|+++.|+.     |+   -.|+.|...|.+.+|.+--  +..-..........+.   +.|..+. |+.+
T Consensus       128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---~~i~~I~~i~~~  204 (395)
T PF08596_consen  128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---SPILSIIPINAD  204 (395)
T ss_dssp             --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETT
T ss_pred             cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---CceEEEEEEECC
Confidence                  334688888872     33   4688899999999998752  1111111111111111   2344444 4322


Q ss_pred             ---------------------CCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEE-----ecCCCEEEEEECCCc
Q 001362          948 ---------------------QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATF-----SCDCRMVFTSFVDGT 1001 (1092)
Q Consensus       948 ---------------------g~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~f-----s~dg~~l~t~~~Dg~ 1001 (1092)
                                           ..+++++.+..++++...+.+...... ........+++     ...+..|++-..+|.
T Consensus       205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~  283 (395)
T PF08596_consen  205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGS  283 (395)
T ss_dssp             T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE
T ss_pred             CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCc
Confidence                                 125666889999999999888776655 22223334455     236778888899999


Q ss_pred             EEEEEcCCCceEEeecc
Q 001362         1002 LSIHEASNLEVQCRILS 1018 (1092)
Q Consensus      1002 i~vwd~~~~~~~~~~~~ 1018 (1092)
                      |+++.+...+.+.....
T Consensus       284 i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  284 IRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             EEEEETTT--EEEEEE-
T ss_pred             EEEEECCCchHhhcccC
Confidence            99999999999988874

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.93  E-value=0.013  Score=62.77  Aligned_cols=228  Identities=12%  Similarity=0.050  Sum_probs=112.4

Q ss_pred             EEECCCCCEEEEEeC---CCEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001362          402 VVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  477 (1092)
Q Consensus       402 l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~  477 (1092)
                      =+|.+||+.|+.++.   ...+.+-|+++++..+    |.... ........+++++  .++-......|+--|+++.+.
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~  114 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEE  114 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--E
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcE
Confidence            367889988887765   4468888898876443    33332 2233567788888  444444456888899999887


Q ss_pred             eEEEecCCcCeEEEeecccCCccEEEEEec----------------------CCeEEEEEcCCCCceEEecCCCCceEEE
Q 001362          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISV----------------------DGKIKAWLYDSLGARVDYDAPGLGCTRM  535 (1092)
Q Consensus       478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----------------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~  535 (1092)
                      ...+......+-...+....|+..++..-.                      ...|...|+.+++....+. ....+..+
T Consensus       115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~  193 (386)
T PF14583_consen  115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV  193 (386)
T ss_dssp             EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred             EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence            666666666666666665666666554321                      1234445666655444333 44567788


Q ss_pred             EEccCCCEE-EEEecCCCCce---eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-----CCCcEEEEE
Q 001362          536 AYSANGRRL-FSCGTSKEGES---FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----DDHVIKIWD  606 (1092)
Q Consensus       536 ~~s~dg~~l-~~~~~~~~~~~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-----~dg~i~iwd  606 (1092)
                      .|+|....+ ..|.. +..+.   .|.+.+.. |...+.+..+. ....+..=.|.|||..+.--+     .+..|.-+|
T Consensus       194 ~fsP~dp~li~fCHE-Gpw~~Vd~RiW~i~~d-g~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d  270 (386)
T PF14583_consen  194 QFSPTDPTLIMFCHE-GPWDLVDQRIWTINTD-GSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYD  270 (386)
T ss_dssp             EEETTEEEEEEEEE--S-TTTSS-SEEEEETT-S---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-
T ss_pred             ccCCCCCCEEEEecc-CCcceeceEEEEEEcC-CCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeC
Confidence            999965544 44443 33222   34444433 33333333322 123455557999998876532     345677788


Q ss_pred             CCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001362          607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  643 (1092)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  643 (1092)
                      +.+++.......+    .....-.++||++++-=+.|
T Consensus       271 ~~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  271 PDTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred             CCCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence            8887665433322    22345556788877654444

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.92  E-value=0.005  Score=68.05  Aligned_cols=110  Identities=16%  Similarity=0.148  Sum_probs=79.8

Q ss_pred             ceEEEEecC-CCEEEEE-----eCCc----EEEEEcCCce--eeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001362          939 ETHIQFHKD-QTRFLLV-----HETH----LAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus       939 v~~l~~s~d-g~~la~~-----~d~~----i~lwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd 1006 (1092)
                      ..++.||-. ...+.+.     .+|.    -.+|+....+  ++..........|.+++++|+...|+.|+.||+|.+||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            466777763 3344331     2332    5677776553  33333345688999999999999999999999999999


Q ss_pred             cCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001362         1007 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1007 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      ...+.....-            ..+.|..++||| ++..+++|+..|.+.+||+.
T Consensus       288 ~~~~~t~~~k------------a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  288 TTRGVTLLAK------------AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             cCCCeeeeee------------ecccceEEEEcC-CCcEEEEEcCCceEEEEEee
Confidence            9887444221            124566799999 58999999999999999974

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.90  E-value=0.0063  Score=70.63  Aligned_cols=248  Identities=13%  Similarity=0.107  Sum_probs=139.9

Q ss_pred             EEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC--CCCEEEEEe---------CCC
Q 001362          350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAY---------SKH  418 (1092)
Q Consensus       350 lasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~las~~---------~d~  418 (1092)
                      +..++.++.|.-+|.++|+.+-.+...                 .+...-..+.-+|  .+..+++++         .++
T Consensus       113 V~v~~~~g~v~AlD~~TG~~~W~~~~~-----------------~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g  175 (488)
T cd00216         113 VFFGTFDGRLVALDAETGKQVWKFGNN-----------------DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRG  175 (488)
T ss_pred             EEEecCCCeEEEEECCCCCEeeeecCC-----------------CCcCcceEecCCCEEECCEEEEeccccccccCCCCc
Confidence            566778899999999999987643221                 1100000011111  124444443         357


Q ss_pred             EEEEEEccCCCcccceEEEcc----------------cc-cce-eEEEEecCCCcEEEEEEeCCC---------------
Q 001362          419 IVQLYAYHGGSDARQQLEIDA----------------HV-GNV-NDLAFSAPCKQISVITCGDDK---------------  465 (1092)
Q Consensus       419 ~i~iwd~~~~~~~~~~~~~~~----------------h~-~~v-~~~~~s~d~~~l~l~s~~~d~---------------  465 (1092)
                      .+.-.|..+|+.+-.......                +. ..| ...++.+.+.  .++.++.++               
T Consensus       176 ~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g--~V~vg~~~g~~~~~~~~~~~~~~~  253 (488)
T cd00216         176 ALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN--LVYVGTGNGSPWNWGGRRTPGDNL  253 (488)
T ss_pred             EEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC--EEEEECCCCCCCccCCccCCCCCC
Confidence            788889988875542211100                00 011 1234444445  455565454               


Q ss_pred             ---cEEEEECCCCceeEEEecCCcCeE------EEeecc--cCCc---cEEEEEecCCeEEEEEcCCCCceEEecCCCCc
Q 001362          466 ---TIKVWDAVTGSRTYSFEGHGAPVY------SLCPHA--KENI---HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG  531 (1092)
Q Consensus       466 ---~i~vwd~~~~~~~~~~~~~~~~v~------~~~~~~--~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  531 (1092)
                         .|.-.|.++|+.+..++.-.....      ...+..  .-++   ..++.++.+|.+...|..+++.+.......  
T Consensus       254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--  331 (488)
T cd00216         254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--  331 (488)
T ss_pred             ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--
Confidence               799999999999987642111111      001100  0122   267888899999999999998877654321  


Q ss_pred             eEEEEEccCCCEEEEEecC--------------CCCceeEEEEeCCCCeEEEEEeeccccC-----CceEEEEEcCCCCE
Q 001362          532 CTRMAYSANGRRLFSCGTS--------------KEGESFLVEWNESEGAIKRTYQGLQLQH-----NSVSVVHFDTAKDQ  592 (1092)
Q Consensus       532 i~~~~~s~dg~~l~~~~~~--------------~~~~~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~  592 (1092)
                       ..++.+|  ..++.....              ...++.+.-.|..+|+.+-.........     .+...-.....+..
T Consensus       332 -~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~  408 (488)
T cd00216         332 -QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNL  408 (488)
T ss_pred             -cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCe
Confidence             1123334  333332210              1235678899999998876665431000     01111111124578


Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCC
Q 001362          593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGG  621 (1092)
Q Consensus       593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  621 (1092)
                      +++++.||.++.+|..+|+.+...+....
T Consensus       409 v~~g~~dG~l~ald~~tG~~lW~~~~~~~  437 (488)
T cd00216         409 VFAGAADGYFRAFDATTGKELWKFRTPSG  437 (488)
T ss_pred             EEEECCCCeEEEEECCCCceeeEEECCCC
Confidence            89999999999999999999988876543

The alignment model contains an 8-bladed beta-propeller.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.90  E-value=0.0054  Score=62.65  Aligned_cols=197  Identities=9%  Similarity=0.094  Sum_probs=112.4

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +.|.+-.++++.++|.|+.+.|+|+....+.|...+. +|+.++...                 +.+ -+..-.|++..+
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~   75 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGN   75 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-ST
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECC
Confidence            5677777789999999997778999988899988886 477776533                 333 357788999888


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCcccce-----EEEc---ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC---Cc
Q 001362          408 GSLLGVAYSKHIVQLYAYHGGSDARQQ-----LEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GS  476 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~-----~~~~---~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---~~  476 (1092)
                      +.++++--.++.+.+.++.........     ..+.   .+...+-.++|.+.++.  |+.+-...-..++.+..   +.
T Consensus        76 ~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~  153 (248)
T PF06977_consen   76 GRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGF  153 (248)
T ss_dssp             TEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS
T ss_pred             CEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCcc
Confidence            888887767899999998543211111     1111   24456899999999885  44444455555665443   22


Q ss_pred             eeEEE--------ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CceEEEEEcc
Q 001362          477 RTYSF--------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSA  539 (1092)
Q Consensus       477 ~~~~~--------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s~  539 (1092)
                      .+...        ......+.++++++. .+++++....+..|..+| ..++.+..+....         .....++|.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~  231 (248)
T PF06977_consen  154 DLFVSDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP  231 (248)
T ss_dssp             --EEEE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred             ceeeccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence            22111        113345778888765 567888888888999898 4444433332222         2467899999


Q ss_pred             CCCEEEEE
Q 001362          540 NGRRLFSC  547 (1092)
Q Consensus       540 dg~~l~~~  547 (1092)
                      +|+..++.
T Consensus       232 ~G~LYIvs  239 (248)
T PF06977_consen  232 DGNLYIVS  239 (248)
T ss_dssp             T--EEEEE
T ss_pred             CCCEEEEc
Confidence            99766664

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.86  E-value=2.1e-05  Score=52.66  Aligned_cols=32  Identities=34%  Similarity=0.552  Sum_probs=29.7

Q ss_pred             hhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001362            4 LNKDLVFLILQFLNEEGFTESAHMLERESRFY   35 (1092)
Q Consensus         4 ~~~~~~~li~q~L~~~g~~~s~~~l~~Es~~~   35 (1092)
                      .++++.++|+|||...||.+||++|++|+|+.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            36789999999999999999999999999974

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.85  E-value=0.0061  Score=68.13  Aligned_cols=195  Identities=14%  Similarity=0.088  Sum_probs=120.5

Q ss_pred             EcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEE-EEEecCCeEEE
Q 001362          437 IDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKA  513 (1092)
Q Consensus       437 ~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~v  513 (1092)
                      +..-...+..-+|+|+++.+..++-...+  .+.++|+++++....+. ..+.-..-.|  ++||+.| ++...||...+
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~f--spDG~~l~f~~~rdg~~~i  264 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAF--SPDGSKLAFSSSRDGSPDI  264 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccC--CCCCCEEEEEECCCCCccE
Confidence            33444567778999999975444444343  59999999887655443 1222222345  4455554 55667777554


Q ss_pred             --EEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001362          514 --WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD  591 (1092)
Q Consensus       514 --wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  591 (1092)
                        .|+....... +....+.-..-.|+|||++++..+ ++.+.-.|++.+...+...+......   .. ..-.|+|||+
T Consensus       265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~---~~-~~p~~SpdG~  338 (425)
T COG0823         265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGG---GN-SNPVWSPDGD  338 (425)
T ss_pred             EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCC---CC-cCccCCCCCC
Confidence              5665555333 333333334678999999999886 55567789999988776633332222   12 2667999999


Q ss_pred             EEEEEeC-CCc--EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001362          592 QILAAGD-DHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  643 (1092)
Q Consensus       592 ~l~~~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  643 (1092)
                      +++..+. +|.  |.+.|+.++.....+....   ....-.+.++++.+...+..
T Consensus       339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         339 KIVFESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             EEEEEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence            9988664 344  6667777666544444322   23456777888877665543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.84  E-value=0.00067  Score=74.67  Aligned_cols=115  Identities=15%  Similarity=0.192  Sum_probs=83.3

Q ss_pred             CCCeeEEEEecC-CCEEEEEe-----CCe----EEEEEcCCceeeEE---ecCCCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 001362          802 QEAVPCFALSKN-DAYLFSAS-----GGV----ISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTI  868 (1092)
Q Consensus       802 ~~~v~~~~~s~d-g~~l~~~s-----dg~----i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v  868 (1092)
                      +....++.||.. ...+.+..     +|.    -++|++...+..+.   --.....+.+++++| +...|+.|+.||+|
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi  283 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI  283 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence            344567777763 33444332     233    56777765543221   123667899999999 88999999999999


Q ss_pred             EEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001362          869 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  919 (1092)
Q Consensus       869 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~  919 (1092)
                      .+||...+...  +..+.-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus       284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            99999876322  22345567889999999999999999999999987643

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.81  E-value=0.0084  Score=61.28  Aligned_cols=216  Identities=12%  Similarity=0.104  Sum_probs=116.0

Q ss_pred             EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccc-cCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 001362          837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIFVWDV  915 (1092)
Q Consensus       837 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~  915 (1092)
                      +.+.+-...+..++|.|+++.++++....+.|..++.+ |+.+.++.-. .+..-.|++..++.++++.-.++.+.+.++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            34555666799999999557788888888899888874 7877776532 356888999988887777667999999998


Q ss_pred             CCCc--eeee--eeeecCCCCcCCCCCceEEEEecCCCEEEEEeC-CcEEEEEcCC---ceeeee-----e--ccCCCCC
Q 001362          916 DGWG--IQTC--RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE-THLAIYEAEE---LTCLKQ-----W--FPISSVP  980 (1092)
Q Consensus       916 ~~~~--~~~~--~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-~~i~lwd~~~---~~~~~~-----~--~~~h~~~  980 (1092)
                      ....  ....  ..+..... ......+..++|.|.++.|.++.+ .-..||.+..   ...+..     +  .......
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             ----TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             eccccccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence            4422  1111  11121111 111135899999998777777543 4456666653   111110     0  1113556


Q ss_pred             EEEEEEecC-CCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001362          981 ISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus       981 v~~l~fs~d-g~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w 1058 (1092)
                      +++++|.|. |.+++.+.....|..+| ..|+.+..+....-...- ...--.+--++++| +| .|...+.-+..++|
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl-~~~~~QpEGIa~d~-~G-~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL-SKDIPQPEGIAFDP-DG-NLYIVSEPNLFYRF  247 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG--SS---SEEEEEE-T-T---EEEEETTTEEEEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc-ccccCCccEEEECC-CC-CEEEEcCCceEEEe
Confidence            888999885 45666666778899999 667777666533311000 01111245688998 45 45555566666665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.72  E-value=0.026  Score=64.57  Aligned_cols=249  Identities=13%  Similarity=0.127  Sum_probs=127.6

Q ss_pred             cEEEEEECCCCCEEEEE-eCC----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEE-eC--------
Q 001362          398 SVNRVVWSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GD--------  463 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~-~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~-~~--------  463 (1092)
                      .+...++||||+++|.+ +..    ..++++|+++|+.+..  .+...  ....+.|.+|++. ++.+. ..        
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence            44568899999999977 333    3699999999864432  11111  1223999999985 23333 22        


Q ss_pred             -CCcEEEEECCCCcee--EEEecCCcCeEEEeecccCCccEEEEEecCC----eEEEEEcCCC----CceEEecCCCCce
Q 001362          464 -DKTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSL----GARVDYDAPGLGC  532 (1092)
Q Consensus       464 -d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~vwd~~~~----~~~~~~~~~~~~i  532 (1092)
                       ...|+.|.+.++..-  ..+.........+....+.|+++++..+..+    .+.+.++...    .....+......+
T Consensus       200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~  279 (414)
T PF02897_consen  200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV  279 (414)
T ss_dssp             CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred             CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence             224788888876433  4444444443222333356777776544332    3666677664    2233333333333


Q ss_pred             EEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE---EEEEeeccccCCceEEEEEcCCCCEEEEE-eCCC--cEEEEE
Q 001362          533 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDH--VIKIWD  606 (1092)
Q Consensus       533 ~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-s~dg--~i~iwd  606 (1092)
                      ....-.. +..++..+..+...+.|...++.....   ...+..+.   ..+.-..+...+.+|+.. ..++  .|++++
T Consensus       280 ~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~---~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~  355 (414)
T PF02897_consen  280 EYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED---EDVSLEDVSLFKDYLVLSYRENGSSRLRVYD  355 (414)
T ss_dssp             EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S---SSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC---CceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence            3322223 443433333444567788888876652   22344333   322223333344555553 3343  578899


Q ss_pred             CCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCce
Q 001362          607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS  656 (1092)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~~  656 (1092)
                      +..+.....+..... ..|..+...++++.+.....    -+++..||+.+++.
T Consensus       356 ~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  356 LDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             TT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             CCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            984555555554432 22344444455554443322    26777888887754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.71  E-value=0.0082  Score=66.39  Aligned_cols=254  Identities=14%  Similarity=0.128  Sum_probs=133.4

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeE------Ee------------eeeeeeccccc------ceeeEee
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF------IR------------NFKVWDIGACS------MLFKTAL  391 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~------~~------------~~~~~d~~~~~------~~~~~~~  391 (1092)
                      .|+++.|+++.. -||+|...|.|.||.....+.-.      ..            .-.+-|+....      ......+
T Consensus         3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            588999999976 48889999999999875432221      00            12233443211      1233345


Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcc------cccceeEEEEec-----CC-CcEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFSA-----PC-KQISVI  459 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~------h~~~v~~~~~s~-----d~-~~l~l~  459 (1092)
                      +....++|++++.| |=-++|+|+.+|.+.|.|+.....+.. ..+..      ....|+++.|+-     |+ ..+.++
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            66678999999998 666999999999999999976554432 22333      234688888862     22 124788


Q ss_pred             EEeCCCcEEEEECC--C-Ccee----EEEecCCcCeEEEeecccCC-------------------ccEEEEEecCCeEEE
Q 001362          460 TCGDDKTIKVWDAV--T-GSRT----YSFEGHGAPVYSLCPHAKEN-------------------IHFIFSISVDGKIKA  513 (1092)
Q Consensus       460 s~~~d~~i~vwd~~--~-~~~~----~~~~~~~~~v~~~~~~~~~~-------------------~~~l~s~~~dg~i~v  513 (1092)
                      .|...|.+.+|.+.  . +.-.    .....+.++|..+......+                   .+-++....+..+|+
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            89999999999764  1 2221    11224667776665321111                   122455566788999


Q ss_pred             EEcCCCCceEEecCCCCceEEEEEc-----cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc-cCCceEEEEEc
Q 001362          514 WLYDSLGARVDYDAPGLGCTRMAYS-----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFD  587 (1092)
Q Consensus       514 wd~~~~~~~~~~~~~~~~i~~~~~s-----~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~  587 (1092)
                      +...+.+...........+..+++-     ..+..|++...    ++.++++.+..-+.+..+.-... ....+....++
T Consensus       240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis  315 (395)
T PF08596_consen  240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS  315 (395)
T ss_dssp             E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred             EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence            9888777665544332334444553     24555666554    66799999988877776665320 01123344556


Q ss_pred             CCCCEEEEE
Q 001362          588 TAKDQILAA  596 (1092)
Q Consensus       588 p~~~~l~~~  596 (1092)
                      ++|..++-.
T Consensus       316 ~~Gdi~~~~  324 (395)
T PF08596_consen  316 RNGDIFYWT  324 (395)
T ss_dssp             TTS-EEEE-
T ss_pred             CCCCEEEEe
Confidence            666544443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.71  E-value=0.0067  Score=68.03  Aligned_cols=223  Identities=10%  Similarity=0.064  Sum_probs=117.9

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +......+..+.++|+|++++++ .+|.-.|+....   .+.     ...+.-...+|.+.++   +++-...++|.|+.
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~---~r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALA---WRN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK   95 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTT---TEE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred             CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccC---Ccc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence            44455668899999999999995 566677777322   121     1234556788999665   66666688899974


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      --+.+....+.. ...+..+-.     |.+|...+. +.|.+||+.+.+.+..+...  +|..+.|+++|.+++..+.  
T Consensus        96 n~~~~~~k~i~~-~~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~--  164 (443)
T PF04053_consen   96 NFKNEVVKSIKL-PFSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK--  164 (443)
T ss_dssp             TTEE-TT------SS-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--
T ss_pred             cCccccceEEcC-CcccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC--
Confidence            223333233332 112333321     455555544 48999999999888877754  4889999999999998873  


Q ss_pred             CCceeEEEEeCCCC-----------eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEeC
Q 001362          552 EGESFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDA  618 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~  618 (1092)
                         ..+++++....           .....+....   ..|.+.+|..+  .++-.+.. .++.+  -.|+.  +..+. 
T Consensus       165 ---~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~i~~ld-  232 (443)
T PF04053_consen  165 ---DSIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKYL--VNGETGIIAHLD-  232 (443)
T ss_dssp             ----SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEEEEEE-S-
T ss_pred             ---CeEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcceEEEcC-
Confidence               23666654332           0222222212   57888888766  44444444 66653  33433  33332 


Q ss_pred             CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001362          619 GGGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                          ..+.-+.+.++.+.+.....++.+..+.+..
T Consensus       233 ----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  233 ----KPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             ----S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             ----CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence                2356677778778888888888888887763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.69  E-value=0.01  Score=66.61  Aligned_cols=218  Identities=17%  Similarity=0.184  Sum_probs=119.2

Q ss_pred             CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe
Q 001362          802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK  881 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~  881 (1092)
                      ...+..+.++|+|++++++++|...|+.....+....     +.....+|.+ .++ +|+-...++|.|+.--+.+....
T Consensus        32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~  104 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS  104 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred             CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence            3446789999999999999999999999655554332     3345788988 554 66666688999963333333233


Q ss_pred             eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEE
Q 001362          882 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI  961 (1092)
Q Consensus       882 l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~l  961 (1092)
                      +... ..+..+-.   |.+|...+.+ .|.+||+++++     .+....-.     .|..+.||++|.++|...+..+.|
T Consensus       105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~-----~i~~i~v~-----~vk~V~Ws~~g~~val~t~~~i~i  169 (443)
T PF04053_consen  105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK-----LIRRIDVS-----AVKYVIWSDDGELVALVTKDSIYI  169 (443)
T ss_dssp             ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT-------EEEEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred             EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc-----eeeEEecC-----CCcEEEEECCCCEEEEEeCCeEEE
Confidence            3321 22444433   8888877665 79999999865     33333321     378999999999999988889998


Q ss_pred             EEcCCc-----------eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCce--EEeeccccccCCCCcc
Q 001362          962 YEAEEL-----------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV--QCRILSTAYLRPTTSC 1028 (1092)
Q Consensus       962 wd~~~~-----------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~ 1028 (1092)
                      ++....           ..+.. ...-...|.+.+|-.| -++.|. .. .++.  +.+|+.  ++.+.           
T Consensus       170 l~~~~~~~~~~~~~g~e~~f~~-~~E~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i~~ld-----------  232 (443)
T PF04053_consen  170 LKYNLEAVAAIPEEGVEDAFEL-IHEISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETGIIAHLD-----------  232 (443)
T ss_dssp             EEE-HHHHHHBTTTB-GGGEEE-EEEE-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S-----------
T ss_pred             EEecchhcccccccCchhceEE-EEEecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcceEEEcC-----------
Confidence            876533           01221 1111568889999877 444444 33 7776  444543  22222           


Q ss_pred             CcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001362         1029 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1029 ~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      .+++.  +.+.|. .+.+.....|+.|..+.+.
T Consensus       233 ~~~yl--lgy~~~-~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  233 KPLYL--LGYLPK-ENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             S--EE--EEEETT-TTEEEEE-TT--EEEEE--
T ss_pred             CceEE--EEEEcc-CCEEEEEECCCCEEEEEEC
Confidence            22342  344542 4688888899988888764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.69  E-value=0.014  Score=65.28  Aligned_cols=206  Identities=13%  Similarity=0.159  Sum_probs=145.1

Q ss_pred             eeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeC---CCcEEEEEcCCceee
Q 001362          805 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSEVI  879 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~---dg~v~iwd~~~~~~~  879 (1092)
                      ...+++++++..+....  ++.|.+.|..+.+......... ....++++| +++.+.++..   ++++.+.|..+++..
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            45678888888655554  5889999988777766654322 667899999 6655555554   689999999999888


Q ss_pred             EeeccccCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eC
Q 001362          880 SKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HE  956 (1092)
Q Consensus       880 ~~l~~h~~~V~~l~~spdg~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d  956 (1092)
                      .....-..+ ..++++|+|+.+..+ ..++.|.+.|........    ...............++++|+|..+.+.  .+
T Consensus       154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~  228 (381)
T COG3391         154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS  228 (381)
T ss_pred             EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEeccC
Confidence            775544344 889999999965554 478999999977744221    1111111111245789999999977763  22


Q ss_pred             --CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-CcEEEEEcCCCceEEeec
Q 001362          957 --THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-GTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       957 --~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-g~i~vwd~~~~~~~~~~~ 1017 (1092)
                        +.+...|..++.........-......+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus       229 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         229 GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence              5899999988877765222211145678999999998887544 889999999988876665

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.68  E-value=0.028  Score=63.24  Aligned_cols=199  Identities=16%  Similarity=0.156  Sum_probs=109.7

Q ss_pred             EEEecCCCEEEEEeCC------------eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC
Q 001362          808 FALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS  875 (1092)
Q Consensus       808 ~~~s~dg~~l~~~sdg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~  875 (1092)
                      ++.+|.|..+|...+.            .|+||+.. |+.+.++.-..+.+.++.|+. +. .|++...||.+++||+..
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence            4556666666666544            58899875 556665543448999999997 44 555677899999999873


Q ss_pred             ce------eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee-eeeee-ecCCCCc--CCCCCceE-EEE
Q 001362          876 SE------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-TCRSL-QTPDGVM--TLAPSETH-IQF  944 (1092)
Q Consensus       876 ~~------~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~-~~~~~-~~~~~~~--~~~~~v~~-l~~  944 (1092)
                      ..      .+....-....+....+..+|-.+.+  .++.+.+-  ...... ..+.+ ..+....  ........ ..+
T Consensus       111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l  186 (410)
T PF04841_consen  111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL  186 (410)
T ss_pred             ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEE--eCccccchhhccccCCCcccccccccccccceEe
Confidence            22      11111112222333344445533333  34433333  221111 00111 1111000  00001111 335


Q ss_pred             ecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001362          945 HKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       945 s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      +.+....+. ..++.+.+.+....+.    . ...+++..++.||+|++||.-..+|.+.+.+.+-.+..+.+..
T Consensus       187 ~~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~  256 (410)
T PF04841_consen  187 SSDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT  256 (410)
T ss_pred             ecCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence            555554444 4555666554332211    1 1246899999999999999999999999998877777776663

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.66  E-value=0.089  Score=61.33  Aligned_cols=197  Identities=16%  Similarity=0.085  Sum_probs=115.4

Q ss_pred             CCEEEEEeCCCEEEEEEccCCCcccceEEEccccc--ce-------eEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001362          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NV-------NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~v-------~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      +..|.+++.++.|.-.|..+|+.+-+.. ......  .+       ..+++. ++   .++.++.|+.+.-.|.++|+.+
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~-~~~~~~~~~~~~~~~~~rg~av~-~~---~v~v~t~dg~l~ALDa~TGk~~  143 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYD-PKLPDDVIPVMCCDVVNRGVALY-DG---KVFFGTLDARLVALDAKTGKVV  143 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEec-CCCCcccccccccccccccceEE-CC---EEEEEcCCCEEEEEECCCCCEE
Confidence            4566666677778888888886543211 111100  00       012222 23   3666778999999999999998


Q ss_pred             EEEecC--Cc--CeEE-EeecccCCccEEEEEe------cCCeEEEEEcCCCCceEEecCCCC-----------------
Q 001362          479 YSFEGH--GA--PVYS-LCPHAKENIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGL-----------------  530 (1092)
Q Consensus       479 ~~~~~~--~~--~v~~-~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~-----------------  530 (1092)
                      ......  ..  .+.+ -.+  . ++ .++.+.      .+|.|..+|.++++.+..+.....                 
T Consensus       144 W~~~~~~~~~~~~~tssP~v--~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~  219 (527)
T TIGR03075       144 WSKKNGDYKAGYTITAAPLV--V-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPG  219 (527)
T ss_pred             eecccccccccccccCCcEE--E-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccc
Confidence            766421  10  1111 011  1 33 444443      268899999988887665332111                 


Q ss_pred             --------------ce-EEEEEccCCCEEEEEecC-----C---CCc----eeEEEEeCCCCeEEEEEeeccc--cC---
Q 001362          531 --------------GC-TRMAYSANGRRLFSCGTS-----K---EGE----SFLVEWNESEGAIKRTYQGLQL--QH---  578 (1092)
Q Consensus       531 --------------~i-~~~~~s~dg~~l~~~~~~-----~---~~~----~~i~iwd~~~~~~~~~~~~~~~--~~---  578 (1092)
                                    .+ ..+++.+...+++.+..+     +   .++    ..|.-.|++||+..-.++....  ..   
T Consensus       220 ~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~  299 (527)
T TIGR03075       220 AKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDG  299 (527)
T ss_pred             cCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccC
Confidence                          11 134667766777766532     1   122    3688889999999877765330  00   


Q ss_pred             -CceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceE
Q 001362          579 -NSVSVVHFDTAKD---QILAAGDDHVIKIWDMNKVQLL  613 (1092)
Q Consensus       579 -~~v~~~~~~p~~~---~l~~~s~dg~i~iwd~~~~~~~  613 (1092)
                       ....-+.+..+|+   .++.+..+|.+++.|..+|+.+
T Consensus       300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       300 VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence             1122233334665   6778999999999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.65  E-value=0.015  Score=57.97  Aligned_cols=232  Identities=15%  Similarity=0.082  Sum_probs=137.5

Q ss_pred             EEEEecCCC-EEEEEe-CCe-EEEEEcCCceeeEEecCCCCC--eEEEEEcCCCCCEEEEEeCC-----CcEEEEEcCCc
Q 001362          807 CFALSKNDA-YLFSAS-GGV-ISLYIVMTFKTILTIMPPSPT--ATSLAFNPHDNNVIAIGMDD-----STILIYNARSS  876 (1092)
Q Consensus       807 ~~~~s~dg~-~l~~~s-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~  876 (1092)
                      .++++|.-. -++.+- -|+ ..++|..+.+.+.++....+.  --.=.||| ||.+|...-.|     |.|-|||...+
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence            567777643 344444 355 778999888777665443321  22346999 89988865443     68999999864


Q ss_pred             -eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEE--------------------EEcCCCceeeeeeeecCCCCcCC
Q 001362          877 -EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV--------------------WDVDGWGIQTCRSLQTPDGVMTL  935 (1092)
Q Consensus       877 -~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~i--------------------wd~~~~~~~~~~~~~~~~~~~~~  935 (1092)
                       +.+..+..|.-.-..+.+.+||+.|+.+.  |-|..                    -|-.+++......+.....+   
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~---  225 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ---  225 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh---
Confidence             56778888888888999999999998764  32333                    33233322221111111111   


Q ss_pred             CCCceEEEEecCCCEEEEE-e-----CCcEEEEEcCCceeeeeecc------CCCCCEEEEEEecCCCEEEEEE-CCCcE
Q 001362          936 APSETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF-VDGTL 1002 (1092)
Q Consensus       936 ~~~v~~l~~s~dg~~la~~-~-----d~~i~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~~-~Dg~i 1002 (1092)
                       .+|..++.-+||+.++.+ .     |--..+=-...++.+.-+-.      .-...|-+++..-+..+++..+ ..++.
T Consensus       226 -lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~  304 (366)
T COG3490         226 -LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA  304 (366)
T ss_pred             -cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence             258889999999887763 1     11111111122222221110      1144566777776555555444 55678


Q ss_pred             EEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001362         1003 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus      1003 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
                      .+||..+|.++.......    .        .-++..   ..-|++.+.+|.++++.-
T Consensus       305 vi~da~tG~vv~~a~l~d----a--------aGva~~---~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         305 VIWDAATGAVVSEAALPD----A--------AGVAAA---KGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             EEEEcCCCcEEecccccc----c--------ccceec---cCceEEecCCceEEeccc
Confidence            899999999884433111    1        112222   356888889999998854

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.65  E-value=0.0004  Score=77.28  Aligned_cols=208  Identities=16%  Similarity=0.098  Sum_probs=127.2

Q ss_pred             CCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001362          801 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1092)
                      +...+.--+++..+++++.|++ |.+++|+-..++....-. +..+.+..+.+|+ +..++|.|+..|.|.++-+..+..
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence            4556666678889999999985 999999987776543332 3445566777888 888999999999999998876432


Q ss_pred             -----eEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEE
Q 001362          879 -----ISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL  952 (1092)
Q Consensus       879 -----~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la  952 (1092)
                           +..+. .|...|++++|++|+..+.+|...|+|..-.++....... ..+...   .....|..+....  .+|+
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~-~~q~il---~~ds~IVQlD~~q--~~LL  184 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLS-KSQEIL---SEDSEIVQLDYLQ--SYLL  184 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcc-ccceee---ccCcceEEeeccc--ceeh
Confidence                 12222 3788999999999999999999999999988887211111 111111   1112354544432  3333


Q ss_pred             EEeCCcEEEEEcCCce--eeeeeccCCCCCEEEEEEecC----CCEEEEEECCCcEEEEEcC-CCceEEeec
Q 001362          953 LVHETHLAIYEAEELT--CLKQWFPISSVPISQATFSCD----CRMVFTSFVDGTLSIHEAS-NLEVQCRIL 1017 (1092)
Q Consensus       953 ~~~d~~i~lwd~~~~~--~~~~~~~~h~~~v~~l~fs~d----g~~l~t~~~Dg~i~vwd~~-~~~~~~~~~ 1017 (1092)
                      ++.--.-.+++++...  .+.... ..+-.-...+|-|.    .+-.+.++.-| .|+|.++ .|++..+..
T Consensus       185 VStl~r~~Lc~tE~eti~QIG~k~-R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Thq  254 (726)
T KOG3621|consen  185 VSTLTRCILCQTEAETITQIGKKP-RKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTHQ  254 (726)
T ss_pred             HhhhhhhheeecchhHHHHhcCCC-cCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEeee
Confidence            3332333444444332  111100 00111344566554    33445566665 6899876 456655543

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.59  E-value=0.0038  Score=72.93  Aligned_cols=183  Identities=9%  Similarity=0.067  Sum_probs=105.1

Q ss_pred             CCeeEEEEecCCCEEEEEe-------CC--eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC--------
Q 001362          803 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD--------  865 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~s-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--------  865 (1092)
                      ..+.+.++||||+.++...       +.  .+.+++.. +.. ..+.. ....+.-.|+| |+..|++....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence            3567899999999888765       33  35555542 222 33322 22478899999 77777766432        


Q ss_pred             ----CcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEE---EEcCCCceeeeeeeecCCCCcCCCCC
Q 001362          866 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS  938 (1092)
Q Consensus       866 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~  938 (1092)
                          +.+.+.+++.++...   ...+.|..+.|||||+.+|... ++.|.+   -....|+...........+..   ..
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~  498 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT  498 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence                233333444443322   2356799999999999998876 477777   444444422211111211111   23


Q ss_pred             ceEEEEecCCCEEEEEeCCc--EEEEEcCCceeeeeeccC--CCCCEEEEEEecCCCEEEEEECCC
Q 001362          939 ETHIQFHKDQTRFLLVHETH--LAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus       939 v~~l~~s~dg~~la~~~d~~--i~lwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~Dg 1000 (1092)
                      +.++.|..++.+++...++.  +...++. |..... ..+  ...++..++-+++  .|+....+|
T Consensus       499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g  560 (591)
T PRK13616        499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARA  560 (591)
T ss_pred             cccceEecCCEEEEEecCCCCceEEEecC-Cccccc-cCCCCccCceEEEecCCc--eEEEEcCCc
Confidence            57899999999765544443  4444444 222221 122  2567777777653  355555566

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.59  E-value=0.059  Score=60.65  Aligned_cols=231  Identities=13%  Similarity=0.100  Sum_probs=111.0

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCc--c-cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE-C
Q 001362          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--A-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD-A  472 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd-~  472 (1092)
                      +.|.++.|+.+.+ |++...||.++++|+.....  + .......-....+.+..+..+|-  .++++  ++.+.+-+ .
T Consensus        81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~n~  155 (410)
T PF04841_consen   81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVNNI  155 (410)
T ss_pred             CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEECC--CCeEEEEeCc
Confidence            7999999998654 55566999999999974320  0 00001111122233334444453  33433  34444432 2


Q ss_pred             CCCceeEEE---ecCCc-----CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001362          473 VTGSRTYSF---EGHGA-----PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL  544 (1092)
Q Consensus       473 ~~~~~~~~~---~~~~~-----~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  544 (1092)
                      ......+.+   .+...     ...........+....+....++.+.+.+-.....    ....+++..+++||+|+++
T Consensus       156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~i  231 (410)
T PF04841_consen  156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKFI  231 (410)
T ss_pred             cccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCEE
Confidence            211111111   11000     00000001122334445555555555443222111    1124589999999999999


Q ss_pred             EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCC
Q 001362          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE  624 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  624 (1092)
                      +....    ++.+.+....-.+....+....  ......+.|..+...++.-  ...+.+.....               
T Consensus       232 Al~t~----~g~l~v~ssDf~~~~~e~~~~~--~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~---------------  288 (410)
T PF04841_consen  232 ALFTD----SGNLWVVSSDFSEKLCEFDTDS--KSPPKQMAWCGNDAVVLSW--EDELLLVGPDG---------------  288 (410)
T ss_pred             EEEEC----CCCEEEEECcccceeEEeecCc--CCCCcEEEEECCCcEEEEe--CCEEEEECCCC---------------
Confidence            98865    4557777765555555554432  2455666666553222221  22233332111               


Q ss_pred             CceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001362          625 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       625 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                       ..+.|.-++..++..-.|| ++|.....-..++...
T Consensus       289 -~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp  323 (410)
T PF04841_consen  289 -DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVP  323 (410)
T ss_pred             -CceEEeccCceEEeccCCc-eEEEeCCceEEEEECC
Confidence             2244444455444444455 7777666555555544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=0.2  Score=55.98  Aligned_cols=251  Identities=13%  Similarity=0.119  Sum_probs=161.8

Q ss_pred             cEEEEEECCCCCEEEEEeCCC-EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001362          398 SVNRVVWSPDGSLLGVAYSKH-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~~~d~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  476 (1092)
                      ....++..|+|..+....... .+..-+..... ...  ....-...-..++.++++.. .+++...++.|.+.|..+.+
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~-~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~  107 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNT-VTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT  107 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccce-eee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence            556688889886665553222 34444443111 111  11111133456788888886 45666667899999988887


Q ss_pred             eeEEEecCCcCeEEEeecccCCccEEEEEec---CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001362          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      ......--. ....+++.+  +++.+..+..   ++++.+.|-.+............+ ..++++|+|..++.+.   ..
T Consensus       108 ~~~~~~vG~-~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~---~~  180 (381)
T COG3391         108 VLGSIPVGL-GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN---SD  180 (381)
T ss_pred             eeeEeeecc-CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe---cC
Confidence            777664333 444566644  5555555444   688888888877776664333334 8899999999888875   23


Q ss_pred             ceeEEEEeCCCCeEEEEEeec--cccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001362          554 ESFLVEWNESEGAIKRTYQGL--QLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1092)
                      ++.|.+.|..+....+ -...  .........+.++|+++.+++....   +.+...|..++............ ....+
T Consensus       181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v  258 (381)
T COG3391         181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV  258 (381)
T ss_pred             CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence            6789999977766653 1100  1011345678899999987775433   58999999998877763222222 35678


Q ss_pred             EEccCCCEEEEEeCC-CeEEEEECCCCceeeecc
Q 001362          629 CFNKNGTLLAVIANE-NRIKILETPESNSVDAAG  661 (1092)
Q Consensus       629 ~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~  661 (1092)
                      .++|+|+.+.+.... +.+.+.|..+........
T Consensus       259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            999999998888554 888888888776555443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.47  E-value=0.065  Score=53.61  Aligned_cols=255  Identities=16%  Similarity=0.170  Sum_probs=138.8

Q ss_pred             eEEEEEcCCCCE-EEEEeCCCc-EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-----CeEEEEECCC
Q 001362          581 VSVVHFDTAKDQ-ILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPE  653 (1092)
Q Consensus       581 v~~~~~~p~~~~-l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~  653 (1092)
                      -..++++|.... ++.+-.-|+ ..++|..+.+...++.........-.-+|||||.+|...-+|     |.|-|||...
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            445678877544 334544454 578999998887777654332223346799999999876543     6777887764


Q ss_pred             C-ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCcc
Q 001362          654 S-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV  732 (1092)
Q Consensus       654 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~  732 (1092)
                      + +.+..+..                                                                      
T Consensus       150 ~fqrvgE~~t----------------------------------------------------------------------  159 (366)
T COG3490         150 GFQRVGEFST----------------------------------------------------------------------  159 (366)
T ss_pred             ccceeccccc----------------------------------------------------------------------
Confidence            3 11111111                                                                      


Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEE-eecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001362          733 KANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  811 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw-~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s  811 (1092)
                      |.-....+.+.+||+.++.+..  -|..- ++...+...+   .-...+.+.+..+|..+....++..-+...+..++..
T Consensus       160 ~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNld---sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g  234 (366)
T COG3490         160 HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLD---SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIG  234 (366)
T ss_pred             CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchh---hcCccEEEEeccccchhhhccCchhhhhcceeeeeeC
Confidence            2222234566677775554432  12221 1111110000   0011233455566665655566544467788999999


Q ss_pred             cCCCEEEEEe-CC----e-EEEEEcCCceeeEEecCC-------CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001362          812 KNDAYLFSAS-GG----V-ISLYIVMTFKTILTIMPP-------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1092)
Q Consensus       812 ~dg~~l~~~s-dg----~-i~iwd~~~~~~~~~~~~~-------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1092)
                      +||..++.+- .|    . --+=-...++.+.-+.-.       ...|-+++.+.+++-..+|.-..+...+||..+|.+
T Consensus       235 ~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v  314 (366)
T COG3490         235 RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV  314 (366)
T ss_pred             CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence            9998877663 11    1 111112234444333322       246778888874555555555556788999999987


Q ss_pred             eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001362          879 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1092)
Q Consensus       879 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd  914 (1092)
                      +..-.--  ....++  +...-++..+.+|.+.++.
T Consensus       315 v~~a~l~--daaGva--~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         315 VSEAALP--DAAGVA--AAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             Eeccccc--ccccce--eccCceEEecCCceEEecc
Confidence            6543211  111122  3344455566778787773

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.47  E-value=0.099  Score=55.89  Aligned_cols=231  Identities=11%  Similarity=0.125  Sum_probs=131.2

Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE----
Q 001362          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF----  481 (1092)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~----  481 (1092)
                      ..++.|+.|+.+| +.++++........   . .+...|..+...++-+  .++.-+ |+.+.++++..-......    
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence            3578999999999 89999933222221   1 2333499999999887  344443 599999998754433311    


Q ss_pred             ----------ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC-----CceEEecCCCCceEEEEEccCCCEEEE
Q 001362          482 ----------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-----GARVDYDAPGLGCTRMAYSANGRRLFS  546 (1092)
Q Consensus       482 ----------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1092)
                                ......+...+......+...+......+|.+|.+...     ....++... ..+..++|.  ++.++.
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v  153 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV  153 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence                      11223344444112233344455555669999888763     222333333 567788887  566666


Q ss_pred             EecCCCCceeEEEEeCCCCeEEEEEeeccc---------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--E
Q 001362          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T  615 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~--~  615 (1092)
                      +..     ....+.|+.++.....+.....         ...++..+.. +++.++++-  +..-.+.|. .|+...  .
T Consensus       154 ~~~-----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~  224 (275)
T PF00780_consen  154 GTS-----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST  224 (275)
T ss_pred             EeC-----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence            653     2378889887776554432210         0123333333 345555553  222233343 444332  3


Q ss_pred             EeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeeccc
Q 001362          616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV  662 (1092)
Q Consensus       616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  662 (1092)
                      +.-..   ....+++.  ..++++.+. +.|.||++.+++.++.+..
T Consensus       225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence            33222   24556653  457776666 5699999999988887764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.42  E-value=0.0086  Score=70.76  Aligned_cols=147  Identities=12%  Similarity=0.127  Sum_probs=102.8

Q ss_pred             CCCEEEEE-eCCCcEEEEEcCCceeeEeeccccCC-eEEEEEcCCC-------CEEEEEeCCCcEEEEEcCCCceeeeee
Q 001362          855 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDAL-------NILVSSGGDAQIFVWDVDGWGIQTCRS  925 (1092)
Q Consensus       855 d~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg-------~~l~s~s~Dg~i~iwd~~~~~~~~~~~  925 (1092)
                      +.++|+.- .....|+-.|+..|+.+..+..|... |..+  .|+.       ..-+.|=.+..+..||..-..   .++
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~  566 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL  566 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence            45555543 34578999999999999999987754 5544  4432       233445667779999987532   112


Q ss_pred             eecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 001362          926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus       926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vw 1005 (1092)
                      +.............++++-+.+|.+.+.+.+|.|++||- .|+...+.+++-+.+|.+|..+.||+||++.+ +..+.++
T Consensus       567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi  644 (794)
T PF08553_consen  567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLI  644 (794)
T ss_pred             eeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence            221111112223578888888888877789999999994 45556666777789999999999999998665 6678888


Q ss_pred             EcC
Q 001362         1006 EAS 1008 (1092)
Q Consensus      1006 d~~ 1008 (1092)
                      ++.
T Consensus       645 ~t~  647 (794)
T PF08553_consen  645 DTL  647 (794)
T ss_pred             EEe
Confidence            863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.41  E-value=0.00011  Score=80.50  Aligned_cols=203  Identities=13%  Similarity=0.103  Sum_probs=129.6

Q ss_pred             CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce--EEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeCC
Q 001362          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      .+.+++.....+..+++.|..+|.|-+-.++.....  .....+...+++++|++ |.+.|+++-..-+.+..+.+||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            344555444445567888999999998877654432  34445566889999988 566777776555567789999998


Q ss_pred             CC--eEEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCCCceEEEcc-CCCEE
Q 001362          564 EG--AIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNK-NGTLL  637 (1092)
Q Consensus       564 ~~--~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~-~~~~l  637 (1092)
                      ++  .+..  .+.+.  ......+++|..+.+.+++|.....+.++|++- ......+.    +..+..+..+| .++++
T Consensus       138 s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYF  211 (783)
T ss_pred             cccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCce
Confidence            77  2211  22221  124556888988889999999888999999872 22222221    12366778888 77787


Q ss_pred             EEEeCCCeEEEEECC-CC-ceeeeccccc----CceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccc
Q 001362          638 AVIANENRIKILETP-ES-NSVDAAGVLS----DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1092)
Q Consensus       638 ~~~~~dg~i~iw~~~-~~-~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1092)
                      ++-. ||.|.+||.. .- .++..+....    ..+..++++|..+                    |...+.....++|+
T Consensus       212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--------------------glla~l~RdS~tIr  270 (783)
T KOG1008|consen  212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--------------------GLLAVLSRDSITIR  270 (783)
T ss_pred             eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------------chhhhhccCcceEE
Confidence            7666 8999999943 21 2222222222    2478888887643                    33333334456788


Q ss_pred             eeccc
Q 001362          712 VEKPL  716 (1092)
Q Consensus       712 lw~~~  716 (1092)
                      ++++.
T Consensus       271 lydi~  275 (783)
T KOG1008|consen  271 LYDIC  275 (783)
T ss_pred             Eeccc
Confidence            88754

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.36  E-value=0.054  Score=57.62  Aligned_cols=225  Identities=15%  Similarity=0.090  Sum_probs=136.3

Q ss_pred             EEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCC
Q 001362          339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH  418 (1092)
Q Consensus       339 ~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~  418 (1092)
                      ...|.|+...|+.+--..+.|.-|+..+|+...                    +. +.+.+.++..-.++..|+++. .+
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~-~g   86 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE-HG   86 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc-cc
Confidence            346778888777777778999999998775442                    11 233445555444555555543 33


Q ss_pred             EEEEEEccCCCcccceEEEc-c-cccceeEEEEecCCCcEEEEEEeCC----------CcEEEEECC-CCceeEEEecCC
Q 001362          419 IVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGDD----------KTIKVWDAV-TGSRTYSFEGHG  485 (1092)
Q Consensus       419 ~i~iwd~~~~~~~~~~~~~~-~-h~~~v~~~~~s~d~~~l~l~s~~~d----------~~i~vwd~~-~~~~~~~~~~~~  485 (1092)
                       +.+++.+++.......... + -....+.+...|+|.  +.+ +...          ..-.+|-+. .+..++.+..+-
T Consensus        87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~  162 (307)
T COG3386          87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL  162 (307)
T ss_pred             -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcCCCCEEEeecCcE
Confidence             6777776655422211111 1 124567888999998  333 3322          112344444 566677666666


Q ss_pred             cCeEEEeecccCCccEEEEE-ecCCeEEEEEcCC-----CCc--eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001362          486 APVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDS-----LGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~-----~~~--~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                      ..-+.++|+|  |++.++.+ +..+.|.-|++..     ...  ........+..-.++...+|.+-+++...   ...|
T Consensus       163 ~~~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v  237 (307)
T COG3386         163 TIPNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRV  237 (307)
T ss_pred             EecCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceE
Confidence            6678899965  55555555 4458888887763     111  12233344556678888888887644321   2369


Q ss_pred             EEEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEeC
Q 001362          558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD  598 (1092)
Q Consensus       558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~s~  598 (1092)
                      ..|+.. |+++..+....   ..+.+++|. |+.+.|++.+.
T Consensus       238 ~~~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         238 VRFNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             EEECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEec
Confidence            999998 99988888775   566777774 45566665543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.36  E-value=0.16  Score=54.24  Aligned_cols=228  Identities=14%  Similarity=0.074  Sum_probs=128.5

Q ss_pred             CCceEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Q 001362          345 VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY  423 (1092)
Q Consensus       345 dg~~llasg~~d~~v~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iw  423 (1092)
                      .++ .|+.|+.+| +.+++... ......                     .+..+|..+...|+-+.|++-+ |+.+.++
T Consensus         6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i---------------------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~   61 (275)
T PF00780_consen    6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRI---------------------LKLSSITQLSVLPELNLLLVLS-DGQLYVY   61 (275)
T ss_pred             CCC-EEEEEECCC-EEEEEecCCccceeE---------------------eecceEEEEEEecccCEEEEEc-CCccEEE
Confidence            345 477888888 99999832 222211                     1334499999999888877765 4889999


Q ss_pred             EccCCCcccceEE-----------EcccccceeEEE--EecCCCcEEEEEEeCCCcEEEEECCCC-----ceeEEEecCC
Q 001362          424 AYHGGSDARQQLE-----------IDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHG  485 (1092)
Q Consensus       424 d~~~~~~~~~~~~-----------~~~h~~~v~~~~--~s~d~~~l~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~~  485 (1092)
                      ++..-........           -......+...+  -...+.. .|+.+ ..+.|.+|.+...     +..+++. ..
T Consensus        62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp  138 (275)
T PF00780_consen   62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LP  138 (275)
T ss_pred             EchhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEE-ECCEEEEEEEECCcccccceeEEEE-cC
Confidence            9876443321100           001222344444  1123332 34433 4558888877653     3555654 44


Q ss_pred             cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC------------CceEEEEEccCCCEEEEEecCCCC
Q 001362          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------------LGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------------~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      ..+.+++|.    +..++.|..+ ...+.|+.++..........            .++..+. -+++.+|++..     
T Consensus       139 ~~~~~i~~~----~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~~-----  207 (275)
T PF00780_consen  139 DPPSSIAFL----GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCYD-----  207 (275)
T ss_pred             CCcEEEEEe----CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEec-----
Confidence            778888885    2456666644 46778888665544332111            1222222 34456665532     


Q ss_pred             ceeEEEEeCCCCeEEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001362          554 ESFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  619 (1092)
                       . +-++=-..|+..+  .+.- .   ..+..+++.  ..++++.+. +.|.||++.++++++.+..+
T Consensus       208 -~-~g~fv~~~G~~~r~~~i~W-~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  208 -N-IGVFVNKNGEPSRKSTIQW-S---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             -c-eEEEEcCCCCcCcccEEEc-C---CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence             1 3333233454443  2221 1   344555553  357777666 45999999999999998754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.34  E-value=0.068  Score=56.88  Aligned_cols=199  Identities=13%  Similarity=0.081  Sum_probs=115.0

Q ss_pred             EEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec--
Q 001362          808 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE--  883 (1092)
Q Consensus       808 ~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~--  883 (1092)
                      ..|.++...|....  .+.|.-|+..+++. ..+..+......+.+.. ++ .|+++. . -+.+++.+++..+..+.  
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~-~g-~Lv~~~-~-g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDA-GG-RLIACE-H-GVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecC-CC-eEEEEc-c-ccEEEeccCCceeEEeccc
Confidence            35667777666665  68899999876643 23332322223334443 44 444332 3 36677776655422221  


Q ss_pred             --c-ccCCeEEEEEcCCCCEEEEEeC-----C----CcEEEEEcC-CCceeeeeeeecCCCCcCCCCCceEEEEecCCCE
Q 001362          884 --G-HSKRVTGLVFSDALNILVSSGG-----D----AQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  950 (1092)
Q Consensus       884 --~-h~~~V~~l~~spdg~~l~s~s~-----D----g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~  950 (1092)
                        + -......+...|+|.+.++...     .    ..=.||-+. .+.     ..+....+..   .-..++||||++.
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~~---~~NGla~SpDg~t  176 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDLT---IPNGLAFSPDGKT  176 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcEE---ecCceEECCCCCE
Confidence              1 1234556788899988876544     0    112455555 222     1122222111   2467999999988


Q ss_pred             EEEE--eCCcEEEEEcCC--ce----eeeeeccCCCCCEEEEEEecCCCEEEEEECCC-cEEEEEcCCCceEEeecccc
Q 001362          951 FLLV--HETHLAIYEAEE--LT----CLKQWFPISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus       951 la~~--~d~~i~lwd~~~--~~----~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg-~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
                      +..+  ..+.|.-|++..  +.    ........+.+....++...+|.+.+++..+| .|.+|+.+ |+++..+....
T Consensus       177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~  254 (307)
T COG3386         177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV  254 (307)
T ss_pred             EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence            7774  447788887752  21    11122223457777888888998876554444 89999999 99998887443

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.32  E-value=8.9e-05  Score=81.05  Aligned_cols=203  Identities=12%  Similarity=0.165  Sum_probs=127.6

Q ss_pred             CCCceEEeecCCCc-eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CCCEE
Q 001362          334 SSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL  411 (1092)
Q Consensus       334 ~~~V~~v~~spdg~-~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l  411 (1092)
                      +..+.|++++-+.+ -++++|..+|.|.+-.+....-.                 ...+..+|....++++|++ |...|
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L  118 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL  118 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence            34788888765543 58999999999998876543211                 0112556888999999999 77888


Q ss_pred             EEEe----CCCEEEEEEccCC--CcccceEEEc-ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEec
Q 001362          412 GVAY----SKHIVQLYAYHGG--SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG  483 (1092)
Q Consensus       412 as~~----~d~~i~iwd~~~~--~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~  483 (1092)
                      |.|-    .|..+.|||+.++  ...... .+. +......+++|..|.+  ++.+|.....+.++|++... ....+  
T Consensus       119 Aagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--  193 (783)
T KOG1008|consen  119 AAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--  193 (783)
T ss_pred             HhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--
Confidence            8873    3557999999987  222111 122 2334566889988877  78888888899999976321 11111  


Q ss_pred             CCcCeEEEeecccCCccEEEEEecCCeEEEEE-cCCCCceE-EecCC----CCceEEEEEccCCCE-EEEEecCCCCcee
Q 001362          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWL-YDSLGARV-DYDAP----GLGCTRMAYSANGRR-LFSCGTSKEGESF  556 (1092)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~-~~~~~----~~~i~~~~~s~dg~~-l~~~~~~~~~~~~  556 (1092)
                      .+..+..+.+.|- .+.++++-. ||.|.+|| ...-+... .+...    ...+..++|.|-..- ++++..   ..++
T Consensus       194 nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~t  268 (783)
T KOG1008|consen  194 NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSIT  268 (783)
T ss_pred             hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---Ccce
Confidence            2233444555442 224565554 99999999 43333222 11111    124788999996543 344432   2667


Q ss_pred             EEEEeCC
Q 001362          557 LVEWNES  563 (1092)
Q Consensus       557 i~iwd~~  563 (1092)
                      |+++|+.
T Consensus       269 Irlydi~  275 (783)
T KOG1008|consen  269 IRLYDIC  275 (783)
T ss_pred             EEEeccc
Confidence            8888875

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.31  E-value=0.74  Score=55.72  Aligned_cols=205  Identities=13%  Similarity=0.145  Sum_probs=120.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcC--------eEEEeecc--------------cCCccEEEEEecCCeEEEE
Q 001362          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHA--------------KENIHFIFSISVDGKIKAW  514 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~--------------~~~~~~l~s~~~dg~i~vw  514 (1092)
                      .++.++.++.|.-.|.++|+.+.++......        ...+++..              ...+..++.++.|+.+.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            4666777888888898899888776532211        11222221              1233478889999999999


Q ss_pred             EcCCCCceEEecCCCC------------ceEEEEEcc--CCCEEEEEecCCC------CceeEEEEeCCCCeEEEEEeec
Q 001362          515 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL  574 (1092)
Q Consensus       515 d~~~~~~~~~~~~~~~------------~i~~~~~s~--dg~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~  574 (1092)
                      |.++++....+.....            ....+.-+|  .+..++.++...+      ..+.|+-+|..+|+.+-.+..-
T Consensus       276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g  355 (764)
T TIGR03074       276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG  355 (764)
T ss_pred             ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence            9998888765532111            000111112  1335555543222      2578999999999988776531


Q ss_pred             cc--------------cCCce-EEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCceEEEEeCCCC
Q 001362          575 QL--------------QHNSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG  621 (1092)
Q Consensus       575 ~~--------------~~~~v-~~~~~~p~~~~l~~~s------------------~dg~i~iwd~~~~~~~~~~~~~~~  621 (1092)
                      ..              ....+ ...++.++...++.+.                  ..+.|.-.|.++|+....++...+
T Consensus       356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h  435 (764)
T TIGR03074       356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH  435 (764)
T ss_pred             CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence            10              00011 2345555555555422                  224566778889988877754211


Q ss_pred             C-------CCCceEEEcc-CCC---EEEEEeCCCeEEEEECCCCceeeecc
Q 001362          622 L-------PENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       622 ~-------~~v~~v~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                      .       ....-+.+.. +|+   .++.++.+|.+.++|..+++.+....
T Consensus       436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            0       1111122322 553   78999999999999999998776544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.16  E-value=0.026  Score=61.87  Aligned_cols=214  Identities=11%  Similarity=0.115  Sum_probs=116.7

Q ss_pred             ccccCCCCCceeeecCCCCCCCCCeeEEEEecC----CCEEEEEe----------C-CeEEEEEcCCc----eeeEEe--
Q 001362          781 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN----DAYLFSAS----------G-GVISLYIVMTF----KTILTI--  839 (1092)
Q Consensus       781 ~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~d----g~~l~~~s----------d-g~i~iwd~~~~----~~~~~~--  839 (1092)
                      ++.|+.+...+....+...++...+..+.+..+    ..++++|.          . |.+.++++...    ..+..+  
T Consensus         5 ~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~   84 (321)
T PF03178_consen    5 RLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS   84 (321)
T ss_dssp             EEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE
T ss_pred             EEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE
Confidence            344455555455555543222222333344432    56777774          1 77999999884    122211  


Q ss_pred             cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce-eeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001362          840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      ....++|++++--.  ++ |+++. .+.|.+|++...+ ....-.- ....++++..  .+++++.|+..+.+.++.++.
T Consensus        85 ~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   85 TEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEET
T ss_pred             EeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEc
Confidence            22467888888763  44 44444 4789999998877 4333221 2224555554  466999999888899886664


Q ss_pred             CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCC-------ce-eeeeeccCC-CCCEEEE---
Q 001362          918 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE-------LT-CLKQWFPIS-SVPISQA---  984 (1092)
Q Consensus       918 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~-------~~-~~~~~~~~h-~~~v~~l---  984 (1092)
                      ... ....+..-...    ..++++.|-+|++.++++ .+|.+.++....       +. .+.....-| ...|+++   
T Consensus       159 ~~~-~l~~va~d~~~----~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~  233 (321)
T PF03178_consen  159 ENN-KLILVARDYQP----RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG  233 (321)
T ss_dssp             TTE--EEEEEEESS-----BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred             cCC-EEEEEEecCCC----ccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence            221 11122221111    258899998777655554 668899988762       11 222212122 6678777   


Q ss_pred             EEec--CCC------EEEEEECCCcEEEE
Q 001362          985 TFSC--DCR------MVFTSFVDGTLSIH 1005 (1092)
Q Consensus       985 ~fs~--dg~------~l~t~~~Dg~i~vw 1005 (1092)
                      .+.|  .+.      .++.++.+|.|.+.
T Consensus       234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  234 SLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EeeecCCCCcccccceEEEEecCCEEEEE
Confidence            4445  222      47778899998844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.0029  Score=66.24  Aligned_cols=100  Identities=15%  Similarity=0.277  Sum_probs=83.7

Q ss_pred             HHHHHHHHhhhhcChhHHHHHHHHhcCCCh----------hHHHHHHHhcCcCHHHHHHHhccC-CCcCCccccchhhhH
Q 001362            7 DLVFLILQFLNEEGFTESAHMLERESRFYF----------DMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFE   75 (1092)
Q Consensus         7 ~~~~li~q~L~~~g~~~s~~~l~~Es~~~~----------~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~   75 (1092)
                      .+...|..++...|..+.+..|-+|+|...          ++.++-++|..|+-.-|++.+..- ..+.+.  ..++-|.
T Consensus       118 ~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~~  195 (394)
T KOG2817|consen  118 VLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEFK  195 (394)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHHH
Confidence            357899999999999999999999999864          278899999999999999998663 223332  2238899


Q ss_pred             hHHhhhhhhccCCCHH--HHHHHHHhhccccCCCC
Q 001362           76 IRKQNFFEALDGHDIA--KALNILKKDLKDFAPGN  108 (1092)
Q Consensus        76 l~~q~~lEll~~~~~~--~al~~l~~~l~~~~~~~  108 (1092)
                      |..+.|++++..|...  +|+...|+.++|+....
T Consensus       196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~  230 (394)
T KOG2817|consen  196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADH  230 (394)
T ss_pred             HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccch
Confidence            9999999999998877  99999999999996544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.11  E-value=0.17  Score=55.91  Aligned_cols=83  Identities=8%  Similarity=0.065  Sum_probs=56.7

Q ss_pred             CCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEecCCCCCeEE-EEEcCCCC-----------------CEEEE
Q 001362          801 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATS-LAFNPHDN-----------------NVIAI  861 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~-----------------~~las  861 (1092)
                      ....+.+++.+|++++.|+.++ |.|.++|+.++..++.+++..+.-.. +.......                 -+++-
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            4566889999999998888764 99999999999888877765442111 11100011                 13444


Q ss_pred             EeCCCcEEEEEcCCceeeEeec
Q 001362          862 GMDDSTILIYNARSSEVISKLE  883 (1092)
Q Consensus       862 g~~dg~v~iwd~~~~~~~~~l~  883 (1092)
                      +-.-|.|.||.+.+|..+..+.
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEEE
Confidence            6677899999999887666554

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.09  E-value=0.17  Score=55.42  Aligned_cols=214  Identities=13%  Similarity=0.060  Sum_probs=119.1

Q ss_pred             CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE---EEEECCC----CCEEEEEeC---------C-CE
Q 001362          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN---RVVWSPD----GSLLGVAYS---------K-HI  419 (1092)
Q Consensus       357 ~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~---~l~~spd----g~~las~~~---------d-~~  419 (1092)
                      ..|+|.|..+.+.+..++++                  ....+.   .+.|..+    -.+|++|+.         . |.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~------------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr   63 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELE------------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR   63 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEE------------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred             cEEEEEeCCCCeEEEEEECC------------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE
Confidence            35889998888877665543                  223333   4445543    578888743         2 88


Q ss_pred             EEEEEccCC----CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEe-cCCcCeEEEee
Q 001362          420 VQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFE-GHGAPVYSLCP  493 (1092)
Q Consensus       420 i~iwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~-~~~~~v~~~~~  493 (1092)
                      |.++++...    ..++.... ....++|++++-- ++.   ++.+. .+.|.+|++...+ ....-. .....+.++..
T Consensus        64 i~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~---lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~  137 (321)
T PF03178_consen   64 ILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR---LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV  137 (321)
T ss_dssp             EEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE---EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred             EEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE---EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence            999999984    22332222 2457789988776 343   33333 4789999998887 433222 12235566554


Q ss_pred             cccCCccEEEEEecCCeEEEEEcCCCCc-eEE--ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC------
Q 001362          494 HAKENIHFIFSISVDGKIKAWLYDSLGA-RVD--YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------  564 (1092)
Q Consensus       494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~--~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~------  564 (1092)
                      .    +.+++.|.....+.++.++.... ...  -......++++.+-++++.++.+-.    .+.+.++....      
T Consensus       138 ~----~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~~~~~~~~  209 (321)
T PF03178_consen  138 F----KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYNPEIPNSR  209 (321)
T ss_dssp             E----TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-SS-SSTT
T ss_pred             c----ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEECCCCcccc
Confidence            2    34899999988888886665333 222  2333456888888877776665533    45566654431      


Q ss_pred             -C--eEEEEEeeccccCCceEEE---EEcCC--C------CEEEEEeCCCcEEE
Q 001362          565 -G--AIKRTYQGLQLQHNSVSVV---HFDTA--K------DQILAAGDDHVIKI  604 (1092)
Q Consensus       565 -~--~~~~~~~~~~~~~~~v~~~---~~~p~--~------~~l~~~s~dg~i~i  604 (1092)
                       +  .......-|-  ...|.++   .+.|.  +      ..++.++.+|.|.+
T Consensus       210 ~~~~~L~~~~~f~l--g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  210 DGDPKLERISSFHL--GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             TTTTBEEEEEEEE---SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             cccccceeEEEEEC--CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence             1  2222222232  2456665   43441  1      13666777777663

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK10115 protease 2; Provisional

Probab=97.09  E-value=0.67  Score=56.13  Aligned_cols=245  Identities=9%  Similarity=0.040  Sum_probs=123.0

Q ss_pred             CcEEEEEECCCCCEEEEEeCC-----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-----Cc
Q 001362          397 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT  466 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~  466 (1092)
                      -.+..+.|||||++||.+...     ..|++-|+.+|..+..  .+.+ .  -..++|++|++.+ +++...+     ..
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~~-~y~~~~~~~~~~~~  200 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWTF-YYVRKHPVTLLPYQ  200 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCEE-EEEEecCCCCCCCE
Confidence            356678999999999987332     3689999998864331  1222 1  1458999999863 3333222     46


Q ss_pred             EEEEECCCC--ceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCC--CCceEEecCCCCceEEEEEcc
Q 001362          467 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA  539 (1092)
Q Consensus       467 i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~  539 (1092)
                      |+.|++.++  +....+........ +....+.++.+++..+..   +.+.+++...  ................+.  .
T Consensus       201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~  277 (686)
T PRK10115        201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H  277 (686)
T ss_pred             EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence            888898888  33334443333333 222224355655544433   4688888533  222222222222222222  2


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEe
Q 001362          540 NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTID  617 (1092)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~  617 (1092)
                      .+..++..+..+.....|...++. .++. ..+..+. ....+..+.+.. +..+++...+|.-+++-+.. +..+..+.
T Consensus       278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~-~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~  354 (686)
T PRK10115        278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPR-ENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIA  354 (686)
T ss_pred             CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCC-CCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence            234444444333334456556655 2322 2333331 123677777763 34555566677655554332 22334433


Q ss_pred             CCCCCCCCceEEEc--cCCC-EEEEEeC---CCeEEEEECCCC
Q 001362          618 AGGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPES  654 (1092)
Q Consensus       618 ~~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iw~~~~~  654 (1092)
                      .... ..+..+.++  +++. ++++.+.   -+.+..+|..++
T Consensus       355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence            2111 112222333  3333 3333332   367777887765

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.08  E-value=0.21  Score=52.18  Aligned_cols=147  Identities=17%  Similarity=0.137  Sum_probs=89.8

Q ss_pred             CeEEEEEcCCCCCEEEEEe-CCC--cEEEEEcCCceeeEe-eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE-cCCCc
Q 001362          845 TATSLAFNPHDNNVIAIGM-DDS--TILIYNARSSEVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWG  919 (1092)
Q Consensus       845 ~i~~l~~s~~d~~~lasg~-~dg--~v~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd-~~~~~  919 (1092)
                      .+.+.++++ +++.+|... .++  .++++..  +..... +.+  ..++...|++++...+....+...+++. ...+.
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence            688999999 677666555 233  5555543  332333 233  3688899999988777777677777774 23332


Q ss_pred             eeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe----CCcEEEEEcC---Cc--eee---eeeccCCCCCEEEEEEe
Q 001362          920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCL---KQWFPISSVPISQATFS  987 (1092)
Q Consensus       920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~----d~~i~lwd~~---~~--~~~---~~~~~~h~~~v~~l~fs  987 (1092)
                      ... ..+......    ..|..+.+||||..+|...    ++.|.+--+.   .+  ..+   ..........++.+.|.
T Consensus       100 ~~~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~  174 (253)
T PF10647_consen  100 GEP-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS  174 (253)
T ss_pred             cee-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence            211 112221111    1599999999999999832    5677777553   23  111   11111235688999999


Q ss_pred             cCCCEEEEEECCCc
Q 001362          988 CDCRMVFTSFVDGT 1001 (1092)
Q Consensus       988 ~dg~~l~t~~~Dg~ 1001 (1092)
                      +++++++.+...+.
T Consensus       175 ~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  175 DDSTLVVLGRSAGG  188 (253)
T ss_pred             CCCEEEEEeCCCCC
Confidence            99998777665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.0028  Score=69.98  Aligned_cols=93  Identities=22%  Similarity=0.430  Sum_probs=72.2

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE-EEEECCCCCEEEEE
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGVA  414 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~-~l~~spdg~~las~  414 (1092)
                      .|.-+.|+|.-. ++|.+..+|.|.+..++ .+.+       |+            +.-|+..++ +++|.|||+.||+|
T Consensus        22 ~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGkllaVg   80 (665)
T KOG4640|consen   22 NIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLAVG   80 (665)
T ss_pred             ceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEEEE
Confidence            788899999988 89999999999998887 4433       33            333666666 99999999999999


Q ss_pred             eCCCEEEEEEccCCCcccceEEEcccccceeEEEEec
Q 001362          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA  451 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~  451 (1092)
                      -.||+|++-|+++|..+...  ...-...|.++-|.+
T Consensus        81 ~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   81 FKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR  115 (665)
T ss_pred             ecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence            99999999999998765431  122344567777763

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.98  E-value=0.18  Score=55.66  Aligned_cols=84  Identities=12%  Similarity=0.248  Sum_probs=58.7

Q ss_pred             CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC-----------------CE
Q 001362          530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-----------------DQ  592 (1092)
Q Consensus       530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----------------~~  592 (1092)
                      ..+.+++.+|++++.++.    |.-+.|.++|..++..++..+|..  +..+.-+.....+                 .+
T Consensus       308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEE
Confidence            357889999998877764    346779999999999999988876  2222222221111                 12


Q ss_pred             E-EEEeCCCcEEEEECCCCceEEEEeCC
Q 001362          593 I-LAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       593 l-~~~s~dg~i~iwd~~~~~~~~~~~~~  619 (1092)
                      | +-+-.-|.|.||.+..|..+..+...
T Consensus       382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence            2 33667899999999999888877654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.95  E-value=0.71  Score=48.91  Aligned_cols=158  Identities=11%  Similarity=0.030  Sum_probs=82.7

Q ss_pred             cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001362          840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  919 (1092)
Q Consensus       840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~  919 (1092)
                      ....+.+..+..++ |+++++++..-....-||--...-...-..-+..|.+|.|+||+.+.+.+ ..|.|+.=+.....
T Consensus       141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence            34456788899999 89998877655555567654321122222346789999999998776644 88888887722211


Q ss_pred             eeeeeeeecC-CCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeecc--CCCCCEEEEEEecCCCEEEEE
Q 001362          920 IQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTS  996 (1092)
Q Consensus       920 ~~~~~~~~~~-~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~t~  996 (1092)
                      ..-.+.+... ....    .+..++|.+++...|++..|.+. ...+.|+.-.....  .-......+.|.++.+-++ .
T Consensus       219 ~~w~~~~~~~~~~~~----~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-l  292 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGY----GILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-L  292 (302)
T ss_dssp             EEE---B-TTSS--S-----EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E
T ss_pred             cccccccCCcccCce----eeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEE-E
Confidence            1111111111 1111    37899999999999988887553 45555554433222  2255688899987765555 4


Q ss_pred             ECCCcEEEE
Q 001362          997 FVDGTLSIH 1005 (1092)
Q Consensus       997 ~~Dg~i~vw 1005 (1092)
                      +.+|.+.-|
T Consensus       293 G~~G~ll~~  301 (302)
T PF14870_consen  293 GQDGVLLRY  301 (302)
T ss_dssp             -STTEEEEE
T ss_pred             CCCcEEEEe
Confidence            578887655

>smart00320 WD40 WD40 repeats

Probab=96.92  E-value=0.0022  Score=43.80  Aligned_cols=39  Identities=36%  Similarity=0.622  Sum_probs=34.6

Q ss_pred             ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001362          876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1092)
Q Consensus       876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd  914 (1092)
                      +++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            355667778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.005  Score=68.07  Aligned_cols=93  Identities=16%  Similarity=0.166  Sum_probs=75.9

Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001362          844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQT  922 (1092)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~  922 (1092)
                      ..+.-+.|+| .-.++|++..+|.|.++.+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++....
T Consensus        21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            4677899999 88899999999999999998 777888887888888 99999999999999999999999999976444


Q ss_pred             eeeeecCCCCcCCCCCceEEEEe
Q 001362          923 CRSLQTPDGVMTLAPSETHIQFH  945 (1092)
Q Consensus       923 ~~~~~~~~~~~~~~~~v~~l~~s  945 (1092)
                      .......       ..|..+-|+
T Consensus        99 ~~~~s~e-------~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVE-------TDISKGIWD  114 (665)
T ss_pred             ccccccc-------cchheeecc
Confidence            3211111       246677776

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.84  E-value=0.045  Score=59.50  Aligned_cols=146  Identities=9%  Similarity=0.114  Sum_probs=101.6

Q ss_pred             EEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCE--E-----EEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001362          858 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI--L-----VSSGGDAQIFVWDVDGWGIQTCRSLQTPD  930 (1092)
Q Consensus       858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~--l-----~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~  930 (1092)
                      +|.++.....++--|++.|+.+..+.-|.. |.-+.+.|+.+.  |     +.|=.|..|.-||..-.........+...
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            444555666888899999999999997777 888888887532  2     22445777889987642221111111111


Q ss_pred             CCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001362          931 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       931 ~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
                        ........|.+-..+|..++.+.+|.|++||- .+....+.+++-..+|..+..+.||++|+.. .+..+.+-++.
T Consensus       427 --y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~  500 (644)
T KOG2395|consen  427 --YSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL  500 (644)
T ss_pred             --cccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence              11112356667777777777789999999998 6766677788889999999999999999855 46677777654

>PHA02713 hypothetical protein; Provisional

Probab=96.83  E-value=0.062  Score=63.29  Aligned_cols=199  Identities=9%  Similarity=-0.015  Sum_probs=108.1

Q ss_pred             CCCEEEEEeCC------CcEEEEEcCCcee--eEeeccccCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCcee
Q 001362          855 DNNVIAIGMDD------STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQ  921 (1092)
Q Consensus       855 d~~~lasg~~d------g~v~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg-----~i~iwd~~~~~~~  921 (1092)
                      ++.+.+.|+.+      ..+..||..+..-  +..+.........+  .-+|+..+.||.++     ++..||..+++..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            66788888754      3577888876542  22222111112222  23678888888764     4788998876533


Q ss_pred             eeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eC-----------------------CcEEEEEcCCceeeeeeccCC
Q 001362          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----------------------THLAIYEAEELTCLKQWFPIS  977 (1092)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d-----------------------~~i~lwd~~~~~~~~~~~~~h  977 (1092)
                      ....+......      .  .+..-+|++.+.| .+                       ..+..||..+.+-... .+-.
T Consensus       381 ~~~~mp~~r~~------~--~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~  451 (557)
T PHA02713        381 MLPDMPIALSS------Y--GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFW  451 (557)
T ss_pred             ECCCCCccccc------c--cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec-CCCC
Confidence            32222111111      1  1223467766664 22                       2477888876654322 1111


Q ss_pred             CCCEEEEEEecCCCEEEEEECC------CcEEEEEcCC-CceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEe
Q 001362          978 SVPISQATFSCDCRMVFTSFVD------GTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1050 (1092)
Q Consensus       978 ~~~v~~l~fs~dg~~l~t~~~D------g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~ 1050 (1092)
                      .......+..-+|+..+.||.+      ..+..||..+ .+....    ...+..     .....++..  ++...++|+
T Consensus       452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~----~~m~~~-----r~~~~~~~~--~~~iyv~Gg  520 (557)
T PHA02713        452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI----TTTESR-----LSALHTILH--DNTIMMLHC  520 (557)
T ss_pred             cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc----cccCcc-----cccceeEEE--CCEEEEEee
Confidence            1122222234567777778754      2467888887 443311    112211     112223333  478999999


Q ss_pred             CCC--cEEEEeCCCCCCccccCCCCCccc
Q 001362         1051 TNG--EVYVIEPNEPGDTWAVLPPDEIVG 1077 (1092)
Q Consensus      1051 ~dg--~v~~w~~~~~~~~~~~~~~~~~~~ 1077 (1092)
                      .||  ++..||+  ...+|...+|.-.+.
T Consensus       521 ~~~~~~~e~yd~--~~~~W~~~~~~~~~~  547 (557)
T PHA02713        521 YESYMLQDTFNV--YTYEWNHICHQHSNS  547 (557)
T ss_pred             ecceeehhhcCc--ccccccchhhhcCCc
Confidence            999  7888888  455699888876544

>PRK10115 protease 2; Provisional

Probab=96.82  E-value=2  Score=52.14  Aligned_cols=244  Identities=9%  Similarity=0.022  Sum_probs=121.3

Q ss_pred             CceEEeecCCCceEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~----~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      .+..+.+||||++++.+.+.+|    .|++-|+.+|+.+.. .                 +.+   .-..++|++|++.|
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~-----------------i~~---~~~~~~w~~D~~~~  186 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-L-----------------LDN---VEPSFVWANDSWTF  186 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-c-----------------ccC---cceEEEEeeCCCEE
Confidence            5677889999996555544444    488999988864421 0                 111   11459999999988


Q ss_pred             EEEeCC------CEEEEEEccCCCcccceEEEccccccee-EEEEecCCCcEEEEEEe-CCCcEEEEECC--CCceeEEE
Q 001362          412 GVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSF  481 (1092)
Q Consensus       412 as~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~d~~~l~l~s~~-~d~~i~vwd~~--~~~~~~~~  481 (1092)
                      +....+      ..|..+++.++..-... .+.+...... .+..+.|++++++-+.+ .++.+.+++..  ++.....+
T Consensus       187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l-v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~  265 (686)
T PRK10115        187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL-VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL  265 (686)
T ss_pred             EEEEecCCCCCCCEEEEEECCCChhHCeE-EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence            776442      35788888877311111 2222222233 33445588853322222 34578888843  34422222


Q ss_pred             ecCCcCeEEEeecccCCccEEEEEecC-C--eEEEEEcCCCCc-eEEecC-CCCceEEEEEccCCCEEEEEecCCCCcee
Q 001362          482 EGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGA-RVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1092)
Q Consensus       482 ~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~vwd~~~~~~-~~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1092)
                      ....+....+. + . ++.+++....+ .  .|...++..... ...+.. ....+..+.+.  ++.|+..... .+...
T Consensus       266 ~~~~~~~~~~~-~-~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~~  339 (686)
T PRK10115        266 PRRKDHEYSLD-H-Y-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLTS  339 (686)
T ss_pred             ECCCCCEEEEE-e-C-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEEE
Confidence            21222222222 1 1 12233332221 2  343344442222 223333 23367777776  4455544432 34566


Q ss_pred             EEEEeCCCCeEEEEEe-eccccCCceEEEEEc--CCCC-EEEEEe---CCCcEEEEECCCCc
Q 001362          557 LVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ  611 (1092)
Q Consensus       557 i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~--p~~~-~l~~~s---~dg~i~iwd~~~~~  611 (1092)
                      +++++..++.. ..+. ...   ..+..+.++  +++. .+++.+   .-+.++.+|..+++
T Consensus       340 l~~~~~~~~~~-~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        340 LRQINRKTREV-IGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             EEEEcCCCCce-EEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            78888654433 3332 111   223333344  3434 333332   44678888888765

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.78  E-value=0.034  Score=65.92  Aligned_cols=146  Identities=12%  Similarity=0.109  Sum_probs=99.3

Q ss_pred             CCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC-eEEEeeccc---CCccEEEEEecCCeEEEEEcCCCCceEE-ec-
Q 001362          453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP-VYSLCPHAK---ENIHFIFSISVDGKIKAWLYDSLGARVD-YD-  526 (1092)
Q Consensus       453 ~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~-  526 (1092)
                      .+.++|........|+-.|+++|+.+..+..|... |..++....   -+..-.+.|-.+..+..||.+....... .. 
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            33334555556788999999999999999888754 777654211   0123466777888899999987543221 11 


Q ss_pred             ---CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001362          527 ---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  603 (1092)
Q Consensus       527 ---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~  603 (1092)
                         .......|++-+.+|. ||+|+.    .|-|++||.-..+....+.+..   .+|..+..+.||+++++.+. ..+.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~-tyLl  642 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLG---DPIIGIDVTADGKWILATCK-TYLL  642 (794)
T ss_pred             cccccCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCC---CCeeEEEecCCCcEEEEeec-ceEE
Confidence               1234677888777775 556665    4459999965444444555655   89999999999999988775 4566


Q ss_pred             EEEC
Q 001362          604 IWDM  607 (1092)
Q Consensus       604 iwd~  607 (1092)
                      +++.
T Consensus       643 Li~t  646 (794)
T PF08553_consen  643 LIDT  646 (794)
T ss_pred             EEEE
Confidence            6654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.77  E-value=0.032  Score=60.61  Aligned_cols=144  Identities=13%  Similarity=0.150  Sum_probs=95.5

Q ss_pred             CCCEEEE-EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEE-----EEEeCCCcEEEEECCCC-c-ee
Q 001362          407 DGSLLGV-AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV-----ITCGDDKTIKVWDAVTG-S-RT  478 (1092)
Q Consensus       407 dg~~las-~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l-----~s~~~d~~i~vwd~~~~-~-~~  478 (1092)
                      +..+|+. +.....++--|++.|+.+.   ++.-|.. |+-+.+.|+.+.-.+     +.|-.|..|.-||++-. . .+
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl  419 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL  419 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence            4444443 4444568888999998776   4555555 788888887652111     23556889999998732 2 23


Q ss_pred             EEEecCC----cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001362          479 YSFEGHG----APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       479 ~~~~~~~----~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      ...++|.    ....|.+  ...+ .+++.||.+|.||+||--.......+.+-+.+|..+..+.||+++++.+     +
T Consensus       420 ~~~q~kqy~~k~nFsc~a--TT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~  491 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFA--TTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K  491 (644)
T ss_pred             eeeeccccccccccceee--ecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence            2223332    2233333  2444 4899999999999999744445556777888999999999999998765     4


Q ss_pred             eeEEEEeC
Q 001362          555 SFLVEWNE  562 (1092)
Q Consensus       555 ~~i~iwd~  562 (1092)
                      .++.+.+.
T Consensus       492 tyLlLi~t  499 (644)
T KOG2395|consen  492 TYLLLIDT  499 (644)
T ss_pred             cEEEEEEE
Confidence            45666554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.75  E-value=0.23  Score=51.82  Aligned_cols=147  Identities=18%  Similarity=0.174  Sum_probs=91.4

Q ss_pred             CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEE-cCCceee
Q 001362          803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI  879 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd-~~~~~~~  879 (1092)
                      ..+.+.++|+|++.+|...  ++.-.+|-...+....... ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence            3678999999999888776  5444444444333333332 233788889999 677777777677777774 3333321


Q ss_pred             -Eeec--cccCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCcee----eeeeeecCCCCcCCCCCceEEEEecCCC
Q 001362          880 -SKLE--GHSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQ----TCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1092)
Q Consensus       880 -~~l~--~h~~~V~~l~~spdg~~l~s~s---~Dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~l~~s~dg~  949 (1092)
                       ..+.  .-.+.|+.+.+||||..+|...   .++.|.|=-+......    ....+......   ...+..++|.+++.
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~~~  178 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDDST  178 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCCCE
Confidence             1111  1122899999999999988766   3567777765532221    11112222111   13689999999999


Q ss_pred             EEEEE
Q 001362          950 RFLLV  954 (1092)
Q Consensus       950 ~la~~  954 (1092)
                      +++.+
T Consensus       179 L~V~~  183 (253)
T PF10647_consen  179 LVVLG  183 (253)
T ss_pred             EEEEe
Confidence            88874

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>smart00320 WD40 WD40 repeats

Probab=96.69  E-value=0.0033  Score=42.88  Aligned_cols=37  Identities=27%  Similarity=0.449  Sum_probs=32.5

Q ss_pred             eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEe
Q 001362          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD  363 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd  363 (1092)
                      ....+..|.+.|++++|+|++. ++++|+.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            4566778999999999999997 789999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.66  E-value=0.058  Score=59.76  Aligned_cols=160  Identities=14%  Similarity=0.109  Sum_probs=93.9

Q ss_pred             CCeEEEEEcCCCCCEEEEEe--CCCcEEEEEcCCceeeEeeccccCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCC
Q 001362          844 PTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spd----g~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      .++..+||.. +.+.+.+.-  .+|.+++=   +.+.+.+|+    .|..+.|+|-    -..|...-.-+.|.||.+..
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfG---ds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFG---DSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCccccC---CccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            4678899984 444444432  23333321   223455554    4889999985    33455567788899999873


Q ss_pred             Cceeeeeee--ecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEE
Q 001362          918 WGIQTCRSL--QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF  994 (1092)
Q Consensus       918 ~~~~~~~~~--~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~  994 (1092)
                      ......+.+  ++-+-.....--...+.|+|....|++ ...+.-.++++......-..-....+.|.|.+|..||+.|+
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV  171 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV  171 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence            322222222  221111111123467899999999988 44444455666533322221223478999999999998877


Q ss_pred             EEE-CCCcEEEEEcCCCc
Q 001362          995 TSF-VDGTLSIHEASNLE 1011 (1092)
Q Consensus       995 t~~-~Dg~i~vwd~~~~~ 1011 (1092)
                      ++- ..=.-++||-....
T Consensus       172 VAvGSsLHSyiWd~~qKt  189 (671)
T PF15390_consen  172 VAVGSSLHSYIWDSAQKT  189 (671)
T ss_pred             EEeCCeEEEEEecCchhh
Confidence            654 33346899865543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.60  E-value=0.088  Score=45.32  Aligned_cols=101  Identities=17%  Similarity=0.201  Sum_probs=66.9

Q ss_pred             eEEEEEcC---CC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEc
Q 001362          889 VTGLVFSD---AL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA  964 (1092)
Q Consensus       889 V~~l~~sp---dg-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~  964 (1092)
                      |++|++..   || +.|+.||.|..|++|+=+.       .+......    ..|++++-...+++..+-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~----~~v~~L~~~~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET----DKVTSLCSLGGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc----cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence            67777765   32 6799999999999998765       22222222    2588888888877766678999999985


Q ss_pred             CCceeeeeeccCCCCCEEEEEEec---CC-CEEEEEECCCcEEE
Q 001362          965 EELTCLKQWFPISSVPISQATFSC---DC-RMVFTSFVDGTLSI 1004 (1092)
Q Consensus       965 ~~~~~~~~~~~~h~~~v~~l~fs~---dg-~~l~t~~~Dg~i~v 1004 (1092)
                      .    .+.|.......++++++..   || .-|++|-.+|.|-+
T Consensus        71 ~----~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   71 S----QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             c----ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            3    2223333344567766543   33 25888888887653

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.56  E-value=0.97  Score=50.23  Aligned_cols=284  Identities=12%  Similarity=0.104  Sum_probs=147.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCc-----eEEEEeCCCCCCCCceEEEc---c--CCCEEEEEeCCCeEEEEECCCC--c--
Q 001362          590 KDQILAAGDDHVIKIWDMNKVQ-----LLTTIDAGGGLPENPRICFN---K--NGTLLAVIANENRIKILETPES--N--  655 (1092)
Q Consensus       590 ~~~l~~~s~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~s---~--~~~~l~~~~~dg~i~iw~~~~~--~--  655 (1092)
                      ...+++||..|.++||+...+.     .+-..+..   .+|..+...   +  +...||+ -.-..+.+|.+...  .  
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~---~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK---DPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecC---CcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence            4688999999999999986543     22222222   235555432   2  2344555 34467888876311  1  


Q ss_pred             -----eeeecccccC--ceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccccc
Q 001362          656 -----SVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  728 (1092)
Q Consensus       656 -----~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~  728 (1092)
                           .+.....|.-  ...++.+.|.+.                 ...-..+..-+.||.+.+++-+...    ....+
T Consensus       113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg-----------------~~~~~~IcVQS~DG~L~~feqe~~~----f~~~l  171 (418)
T PF14727_consen  113 HGNQYQLELIYEHSLQRTAYNMCCGPFGG-----------------VKGRDFICVQSMDGSLSFFEQESFA----FSRFL  171 (418)
T ss_pred             cCcEEEEEEEEEEecccceeEEEEEECCC-----------------CCCceEEEEEecCceEEEEeCCcEE----EEEEc
Confidence                 1111111111  112222222221                 1224567778899999999855322    11112


Q ss_pred             CCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCccc----------ccccCCccccCCCCCceeeecCCC
Q 001362          729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA----------TTKVPPRLYQPRHGPQFMVNDTTD  798 (1092)
Q Consensus       729 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~----------~~~~~~~~w~~~~g~~~~~~~l~~  798 (1092)
                      |..-.   ...+.|.+....+++++++..+..|+++.-....+...          ....-..-|...-|+...      
T Consensus       172 p~~ll---PgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l------  242 (418)
T PF14727_consen  172 PDFLL---PGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL------  242 (418)
T ss_pred             CCCCC---CcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE------
Confidence            22111   22468888888899999999999988754222111110          111122335444444222      


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEE-E------cCCCCCEEEEEeCCCcEEEE
Q 001362          799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA-F------NPHDNNVIAIGMDDSTILIY  871 (1092)
Q Consensus       799 ~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~-~------s~~d~~~lasg~~dg~v~iw  871 (1092)
                           .+..+.++.....+++-+...+.+.+-. |......+ ......|++ |      .+..+..+++++.++++.||
T Consensus       243 -----~i~v~~~~~~~~~IvvLger~Lf~l~~~-G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy  315 (418)
T PF14727_consen  243 -----DIQVVRFSSSESDIVVLGERSLFCLKDN-GSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVY  315 (418)
T ss_pred             -----EEEEEEcCCCCceEEEEecceEEEEcCC-CeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEE
Confidence                 2333444444555666666777776653 44333222 122222221 1      12112358889999999998


Q ss_pred             EcCCceeeEeeccccCCeEEEE---EcCCCCEEEEEeCCCcEEEEEcCC
Q 001362          872 NARSSEVISKLEGHSKRVTGLV---FSDALNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       872 d~~~~~~~~~l~~h~~~V~~l~---~spdg~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      .=  .+.+........+| ++.   |..-...+++-+.+|.+.+-=+.+
T Consensus       316 ~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  316 ED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             eC--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence            53  34444444333333 333   233356888889999988876655

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.55  E-value=0.2  Score=58.79  Aligned_cols=235  Identities=11%  Similarity=0.025  Sum_probs=124.7

Q ss_pred             CCCEEEEEeCC------CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC------CcEEEEECCC
Q 001362          407 DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVT  474 (1092)
Q Consensus       407 dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~~  474 (1092)
                      .+.++++|+.+      ..+..+|..+++-.. ...+. +...-.++++.. +.  +.++||.|      .++..||..+
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~  358 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT  358 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence            45566666655      358888888763221 11122 222233445443 44  78888888      3577888887


Q ss_pred             CceeE--EEecCCcCeEEEeecccCCccEEEEEecCCe-----EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001362          475 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       475 ~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      ++-..  .+...........+    +|.+.+.|+.||.     +-.||..+.+-...-......-..-...-+|+..++|
T Consensus       359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G  434 (571)
T KOG4441|consen  359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG  434 (571)
T ss_pred             CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence            76432  11111111111111    6678899998875     6667666544322222222122222234467777777


Q ss_pred             ecCCCCc--eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceEEEEeCCC
Q 001362          548 GTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       548 ~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~-----i~iwd~~~~~~~~~~~~~~  620 (1092)
                      |.++..+  ..+..||+.+++....-.-.. .+.... ++. -++...+.||.|+.     |..||..+.+....-....
T Consensus       435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~  511 (571)
T KOG4441|consen  435 GGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS  511 (571)
T ss_pred             CcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence            7655432  678899998876644332222 011122 222 24566667776653     7789988877665532222


Q ss_pred             CCCCCceEEEccCCCEEEEEeCCC-----eEEEEECCCCc
Q 001362          621 GLPENPRICFNKNGTLLAVIANEN-----RIKILETPESN  655 (1092)
Q Consensus       621 ~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~  655 (1092)
                      ....+..+  .-++...++|+.||     ++..||..+.+
T Consensus       512 ~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  512 PRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             ccccccEE--EECCEEEEEecccCccccceeEEcCCCCCc
Confidence            21111112  23577778887764     45566655553

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.50  E-value=1.2  Score=48.77  Aligned_cols=113  Identities=24%  Similarity=0.286  Sum_probs=58.7

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC---CCEEE
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLLG  412 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~la  412 (1092)
                      ..+.|+|.|||+ ++++ ...|.|++++ ..+.....    +-++        ..+..........++++|+   ..+|.
T Consensus         3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~~----v~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY   67 (331)
T PF07995_consen    3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKTP----VADL--------PEVFADGERGLLGIAFHPDFASNGYLY   67 (331)
T ss_dssp             SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECEE----EEE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred             CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcce----eccc--------ccccccccCCcccceeccccCCCCEEE
Confidence            568999999997 5665 4589999999 44543110    0000        0123345678899999994   33443


Q ss_pred             E-EeCC--------CEEEEEEccCCC-ccc---ce-EEEcc---cccceeEEEEecCCCcEEEEEEeCCC
Q 001362          413 V-AYSK--------HIVQLYAYHGGS-DAR---QQ-LEIDA---HVGNVNDLAFSAPCKQISVITCGDDK  465 (1092)
Q Consensus       413 s-~~~d--------~~i~iwd~~~~~-~~~---~~-~~~~~---h~~~v~~~~~s~d~~~l~l~s~~~d~  465 (1092)
                      + .+..        ..|.-|....+. .+.   .+ ..+..   ....-..|+|.|||.  +.++.+..+
T Consensus        68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~  135 (331)
T PF07995_consen   68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG  135 (331)
T ss_dssp             EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred             EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence            3 3321        245555555441 111   01 01111   223456699999995  455554333

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PHA02713 hypothetical protein; Provisional

Probab=96.48  E-value=0.12  Score=60.80  Aligned_cols=203  Identities=8%  Similarity=-0.014  Sum_probs=102.2

Q ss_pred             CCCcEEEEEEeCC------CcEEEEECCCCceeE--EEecCCcCeEEEeecccCCccEEEEEecCC-----eEEEEEcCC
Q 001362          452 PCKQISVITCGDD------KTIKVWDAVTGSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS  518 (1092)
Q Consensus       452 d~~~l~l~s~~~d------~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~  518 (1092)
                      ++.  +++.||.+      ..+..||..+.....  .+.........+.+    ++.+.+.|+.++     .+..||..+
T Consensus       303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~  376 (557)
T PHA02713        303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD  376 (557)
T ss_pred             CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence            555  56667643      347788887765321  11111111112222    556777787664     377788765


Q ss_pred             CCceEEecCCCCceEEEEEccCCCEEEEEecCCC-------------------CceeEEEEeCCCCeEEEEEeeccccCC
Q 001362          519 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-------------------GESFLVEWNESEGAIKRTYQGLQLQHN  579 (1092)
Q Consensus       519 ~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~-------------------~~~~i~iwd~~~~~~~~~~~~~~~~~~  579 (1092)
                      .+-...-..+.......+..-+|+..+.||.++.                   ....+..||+.+.+....-.-.. ...
T Consensus       377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-~r~  455 (557)
T PHA02713        377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-GTI  455 (557)
T ss_pred             CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc-ccc
Confidence            4322211111111111122346777677664321                   02458889988876543222111 011


Q ss_pred             ceEEEEEcCCCCEEEEEeCC------CcEEEEECCC-CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC--eEEEEE
Q 001362          580 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE  650 (1092)
Q Consensus       580 ~v~~~~~~p~~~~l~~~s~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iw~  650 (1092)
                      ....+  .-++...+.|+.+      ..+..||..+ .+....-...........++  -+++..++|+.++  .+..||
T Consensus       456 ~~~~~--~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd  531 (557)
T PHA02713        456 RPGVV--SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN  531 (557)
T ss_pred             cCcEE--EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence            11112  2245555666643      2467899887 55543333222221222222  2688889999888  777788


Q ss_pred             CCCCceeeecccccC
Q 001362          651 TPESNSVDAAGVLSD  665 (1092)
Q Consensus       651 ~~~~~~~~~~~~~~~  665 (1092)
                      ..+.+.......|..
T Consensus       532 ~~~~~W~~~~~~~~~  546 (557)
T PHA02713        532 VYTYEWNHICHQHSN  546 (557)
T ss_pred             cccccccchhhhcCC
Confidence            887766554444443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.46  E-value=0.77  Score=50.23  Aligned_cols=241  Identities=12%  Similarity=0.137  Sum_probs=119.7

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCcee---eEEe----cCCCCCeEEEEEcCC---CCCEEEEEeCC--------
Q 001362          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI----MPPSPTATSLAFNPH---DNNVIAIGMDD--------  865 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~---~~~~----~~~~~~i~~l~~s~~---d~~~lasg~~d--------  865 (1092)
                      ....|+|.|||+++++-..|.|++++ ..+..   +..+    .........++++|+   ++.+.++.+..        
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            35789999999998877789999999 44443   2222    223456789999992   23333333321        


Q ss_pred             CcEEEEEcCCc-------ee-eEeecc---ccCCeEEEEEcCCCCEEEEEeCCCc-----------EEEEEcCC-Cceee
Q 001362          866 STILIYNARSS-------EV-ISKLEG---HSKRVTGLVFSDALNILVSSGGDAQ-----------IFVWDVDG-WGIQT  922 (1092)
Q Consensus       866 g~v~iwd~~~~-------~~-~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~-----------i~iwd~~~-~~~~~  922 (1092)
                      ..|.-|....+       +. +..+..   ....-..|+|.|||.+.++.+..+.           =+|+.+.. +....
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~  161 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA  161 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence            13444444333       11 122222   2223456999999988888776543           01111111 00000


Q ss_pred             eeeee---------cCCCCcCCCCCceEEEEecC-CCEEEE--EeCCcEEEEEcCCcee----------------e----
Q 001362          923 CRSLQ---------TPDGVMTLAPSETHIQFHKD-QTRFLL--VHETHLAIYEAEELTC----------------L----  970 (1092)
Q Consensus       923 ~~~~~---------~~~~~~~~~~~v~~l~~s~d-g~~la~--~~d~~i~lwd~~~~~~----------------~----  970 (1092)
                      .....         -..|.    .....++|.|. |++.++  +.+..=.|.-+..|.-                .    
T Consensus       162 dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~  237 (331)
T PF07995_consen  162 DNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP  237 (331)
T ss_dssp             TSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred             CCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence            00000         00011    12467999999 887776  4443322322222210                0    


Q ss_pred             -------eeeccCCCCCEEEEEEec-------CCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEE
Q 001362          971 -------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAI 1036 (1092)
Q Consensus       971 -------~~~~~~h~~~v~~l~fs~-------dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1036 (1092)
                             ..+.-.+...+..+.|-.       .|.++++.-..+.|....+..+........  .. .   ...-+++.+
T Consensus       238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~---~~~~r~~~v  311 (331)
T PF07995_consen  238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FL-G---GFGGRPRDV  311 (331)
T ss_dssp             S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--EC-T---TSSS-EEEE
T ss_pred             CCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--cc-c---cCCCCceEE
Confidence                   000112345677777753       455666665566777777775533322221  11 1   112246688


Q ss_pred             EECCCCCCEEEEEeCCCcEE
Q 001362         1037 AAHPLKPTQFAVGLTNGEVY 1056 (1092)
Q Consensus      1037 ~~~p~~~~~l~~~~~dg~v~ 1056 (1092)
                      ++.| ||.++++.+.+|.|+
T Consensus       312 ~~~p-DG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  312 AQGP-DGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEET-TSEEEEEE-TTTTEE
T ss_pred             EEcC-CCeEEEEECCCCeEe
Confidence            8998 588888888888875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.39  E-value=1.4  Score=45.04  Aligned_cols=185  Identities=9%  Similarity=0.095  Sum_probs=113.6

Q ss_pred             CeeEEEEecCCCEEEEEe-C--CeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee
Q 001362          804 AVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  879 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s-d--g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~  879 (1092)
                      -...+.|..+|.++-+.+ -  ..|+.+|+.+++......-.. ----.++..  ++++..-.-.++...+||..+-+.+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence            345788878888877776 2  469999999998776544332 233445555  4556666788999999999999988


Q ss_pred             EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCc
Q 001362          880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH  958 (1092)
Q Consensus       880 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~  958 (1092)
                      .++. ..+.=+.++  .|++.|+.......|.++|.++-+......+.......   ..+.-+.+- +|...|=. ....
T Consensus       124 ~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv---~~LNELE~i-~G~IyANVW~td~  196 (264)
T PF05096_consen  124 GTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV---SNLNELEYI-NGKIYANVWQTDR  196 (264)
T ss_dssp             EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE------EEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEEC---CCcEeEEEE-cCEEEEEeCCCCe
Confidence            8886 345567777  46777777666777999998875544433332221112   245566665 55444433 5567


Q ss_pred             EEEEEcCCceeeeeecc-----------CC---CCCEEEEEEecCCCEEEEEE
Q 001362          959 LAIYEAEELTCLKQWFP-----------IS---SVPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       959 i~lwd~~~~~~~~~~~~-----------~h---~~~v~~l~fs~dg~~l~t~~  997 (1092)
                      |...|..+|+....+-.           .+   ..-...+++.|++..+...|
T Consensus       197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            88888888887764310           01   34578899988776555554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.31  E-value=0.14  Score=44.04  Aligned_cols=102  Identities=14%  Similarity=0.137  Sum_probs=64.8

Q ss_pred             ceEEee---cCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001362          337 PMSMDF---HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       337 V~~v~~---spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      |+++++   .-||..-|++|+.|..|+||+-+  +.+..                   + .-.+.|++++-... .+++.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E-------------------i-~e~~~v~~L~~~~~-~~F~Y   58 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE-------------------I-TETDKVTSLCSLGG-GRFAY   58 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE-------------------E-ecccceEEEEEcCC-CEEEE
Confidence            555554   45666678999999999999844  33322                   1 14467888877766 67889


Q ss_pred             EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEe---cCCCcEEEEEEeCCCcEE
Q 001362          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS---APCKQISVITCGDDKTIK  468 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s---~d~~~l~l~s~~~d~~i~  468 (1092)
                      +..+|+|-+|+-..    +. ...+... .++++++.   .||.. -|++|-.+|.|-
T Consensus        59 ~l~NGTVGvY~~~~----Rl-WRiKSK~-~~~~~~~~D~~gdG~~-eLI~GwsnGkve  109 (111)
T PF14783_consen   59 ALANGTVGVYDRSQ----RL-WRIKSKN-QVTSMAFYDINGDGVP-ELIVGWSNGKVE  109 (111)
T ss_pred             EecCCEEEEEeCcc----ee-eeeccCC-CeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence            99999998887643    11 1222222 24444443   34443 578888788764

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.19  E-value=0.053  Score=64.10  Aligned_cols=104  Identities=18%  Similarity=0.210  Sum_probs=78.7

Q ss_pred             CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001362          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  486 (1092)
                      -+..++.|+..|.|-..|+.+.  ++....-..-.++|++++|+.||+  .++.|-.+|.|.+||+.+++.++.+..|..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence            4567889999999988888764  221111123456999999999999  788999999999999999999999998888


Q ss_pred             CeEEEeecc-cCCccEEEEEecCCeEEEEEc
Q 001362          487 PVYSLCPHA-KENIHFIFSISVDGKIKAWLY  516 (1092)
Q Consensus       487 ~v~~~~~~~-~~~~~~l~s~~~dg~i~vwd~  516 (1092)
                      +.+.+-+.. ..++..++++...|.  +|.+
T Consensus       174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            887776442 334456777777776  5544

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.15  E-value=3  Score=46.49  Aligned_cols=277  Identities=13%  Similarity=0.102  Sum_probs=149.0

Q ss_pred             CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec-----CCCEEEE
Q 001362          745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFS  819 (1092)
Q Consensus       745 ~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~-----dg~~l~~  819 (1092)
                      +...+++|+..|.++||+-......+.                 ..+....     -..+|..+..-+     +...||+
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-----------------~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaV   93 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPE-----------------DLLLETQ-----LKDPILQVECGKFVSGSEDLQLAV   93 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCc-----------------cEEEEEe-----cCCcEEEEEeccccCCCCcceEEE
Confidence            345688899999999998533222111                 1122221     345566655432     3456777


Q ss_pred             EeCCeEEEEEcCC--ce-------eeEEecCCC--CCeEEEEEcCC----CCCEEEEEeCCCcEEEEEcCCceeeEeecc
Q 001362          820 ASGGVISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPH----DNNVIAIGMDDSTILIYNARSSEVISKLEG  884 (1092)
Q Consensus       820 ~sdg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~~~~~~l~~  884 (1092)
                      -.-..+.||.+..  |.       .+..+..|.  .....++.-|.    +..++.+=+.||.+.+|+-+.-.....+.+
T Consensus        94 LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~  173 (418)
T PF14727_consen   94 LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD  173 (418)
T ss_pred             ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC
Confidence            6778888888731  11       112222232  23334443332    246899999999999999876554455544


Q ss_pred             ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee---------------------eeeeeecCCCCcCCCCCceEEE
Q 001362          885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ---------------------TCRSLQTPDGVMTLAPSETHIQ  943 (1092)
Q Consensus       885 h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~---------------------~~~~~~~~~~~~~~~~~v~~l~  943 (1092)
                       .--...++|++.-..+++++.+..|.-|....-...                     ....+...+...    .|..+.
T Consensus       174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l----~i~v~~  248 (418)
T PF14727_consen  174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL----DIQVVR  248 (418)
T ss_pred             -CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE----EEEEEE
Confidence             222334788888889999999988888875321000                     000011111101    133344


Q ss_pred             EecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEE-Eec----CCC---EEEEEECCCcEEEEEcCCCceEEe
Q 001362          944 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQAT-FSC----DCR---MVFTSFVDGTLSIHEASNLEVQCR 1015 (1092)
Q Consensus       944 ~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~-fs~----dg~---~l~t~~~Dg~i~vwd~~~~~~~~~ 1015 (1092)
                      ++.....+++-.+.++...+.. |.......-  .....+++ |..    ++.   .++.++.++++.||.=.+....+.
T Consensus       249 ~~~~~~~IvvLger~Lf~l~~~-G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~  325 (418)
T PF14727_consen  249 FSSSESDIVVLGERSLFCLKDN-GSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQ  325 (418)
T ss_pred             cCCCCceEEEEecceEEEEcCC-CeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecC
Confidence            4444445555456666666653 443332111  22222222 222    322   477788999999997444443333


Q ss_pred             eccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001362         1016 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus      1016 ~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
                      +.          ..+|. +.++.-++-...|++-+.+|.+.+-=+-.
T Consensus       326 l~----------~~PVa-l~v~~~~~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  326 LP----------HVPVA-LSVANFNGLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             CC----------CCCEE-EEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence            32          12222 22332222357899999999998865543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.11  E-value=0.12  Score=61.48  Aligned_cols=249  Identities=9%  Similarity=0.041  Sum_probs=143.1

Q ss_pred             CCCeeEEEEecCCCEEEEEe--C-CeEEEEEcCCceeeE-----EecCC------CCCeEEEEEcCCCCCEEEEEeCCCc
Q 001362          802 QEAVPCFALSKNDAYLFSAS--G-GVISLYIVMTFKTIL-----TIMPP------SPTATSLAFNPHDNNVIAIGMDDST  867 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~s--d-g~i~iwd~~~~~~~~-----~~~~~------~~~i~~l~~s~~d~~~lasg~~dg~  867 (1092)
                      ...+..+...+|+...++..  + -.|..||+.+...-.     .+..|      .....++.|.|.=-...|+...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            45666777888887776664  3 358999987543222     12211      2344677788743445666778999


Q ss_pred             EEEEEcCCce-eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEec
Q 001362          868 ILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK  946 (1092)
Q Consensus       868 v~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  946 (1092)
                      |++..+.-.. .+..+. -...+++++|+|.|+.++.|-..|++.-|........   .+..+....  ...|.++.|-.
T Consensus       180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence            9988775432 223333 5567899999999999999999999998876653211   222222111  13688888888


Q ss_pred             CCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCC
Q 001362          947 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1026 (1092)
Q Consensus       947 dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1026 (1092)
                      .-.++++-...        ++        ....+...+++.+.      -.-||.+.+-..-.+..-  |   ..++...
T Consensus       254 t~eflvvy~n~--------ts--------~~~dpd~y~~~~~k------~kp~g~~nF~E~~d~tpp--f---g~~~rq~  306 (1405)
T KOG3630|consen  254 TQEFLVVYGNV--------TS--------ETDDPDSYDQKMYK------IKPDGSANFQETFDITPP--F---GQIVRQP  306 (1405)
T ss_pred             ceeEEEEeccc--------cc--------CcCCchhhhhcccc------ccCcceeeeccccCCCCC--c---cccCccc
Confidence            77777762110        00        00111111111111      113444443332222221  1   0111111


Q ss_pred             ccCcccceEEEECCCCCCEEEEEeCC-CcEEEEeCCCCCCccccCCCCCcccCCCCCCccccc
Q 001362         1027 SCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDR 1088 (1092)
Q Consensus      1027 ~~~~v~~~~~~~~p~~~~~l~~~~~d-g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1088 (1092)
                      |.  ....-..|.|++.+.++++..- ..|-+|...   ..|....+.|-.++..+.+.++|+
T Consensus       307 h~--y~~~L~~W~~~~~~vVvvansaSsEvsila~~---~qW~~w~~vde~ra~LP~s~k~d~  364 (1405)
T KOG3630|consen  307 HM--YKVTLSGWIEPDANVVVVANSASSEVSILASM---KQWIEWSQVDEKRAVLPISEKTDK  364 (1405)
T ss_pred             hh--HHHhhhhhcccccceEEEecccccchhhhhhh---cceeeccccccceeeecccccCCC
Confidence            11  1122346777666666666543 468899982   569999999888999999888883

>PRK13684 Ycf48-like protein; Provisional

Probab=95.97  E-value=3.3  Score=45.38  Aligned_cols=157  Identities=11%  Similarity=0.031  Sum_probs=87.8

Q ss_pred             cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcC
Q 001362          886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE  965 (1092)
Q Consensus       886 ~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~  965 (1092)
                      .+.+.++.+.|++.+++++ ..|.+.. ..+.+. .....+.....     ..+..+++.++++.++++..|.+.+=...
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg-~tW~~~~~~~~-----~~l~~i~~~~~g~~~~vg~~G~~~~~s~d  243 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQ-TAWTPHQRNSS-----RRLQSMGFQPDGNLWMLARGGQIRFNDPD  243 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCC-CeEEEeeCCCc-----ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence            4568899999998766554 5564432 211111 11222222211     25889999999999888877776543344


Q ss_pred             CceeeeeeccC---CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCC
Q 001362          966 ELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1042 (1092)
Q Consensus       966 ~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~ 1042 (1092)
                      .|..-.....+   ....+..+.|.+++..++ ++.+|.+. ...+.|+...........+.     ..+  .+.|..  
T Consensus       244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~-----~~~--~~~~~~--  312 (334)
T PRK13684        244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPS-----NFY--KIVFLD--  312 (334)
T ss_pred             CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCc-----ceE--EEEEeC--
Confidence            44432221111   234578899999887665 44677554 45666655433321111111     122  344443  


Q ss_pred             CCEEEEEeCCCcEEEEeCC
Q 001362         1043 PTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1043 ~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      ++....++..|.|-.|+-.
T Consensus       313 ~~~~~~~G~~G~il~~~~~  331 (334)
T PRK13684        313 PEKGFVLGQRGVLLRYVGS  331 (334)
T ss_pred             CCceEEECCCceEEEecCC
Confidence            3455667788998887753

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.90  E-value=2.4  Score=43.40  Aligned_cols=204  Identities=16%  Similarity=0.231  Sum_probs=121.6

Q ss_pred             cccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001362          732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  811 (1092)
Q Consensus       732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s  811 (1092)
                      +....+.+++|+|+.+.|++........++=                      ...|..+.+..+.+   -.....+.+.
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyi  137 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYI  137 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEe
Confidence            3445599999999999999988876555432                      23455466666654   2334567777


Q ss_pred             cCCCEEEEEe-CCeEEEEEcCCceeeEE-------ec--CC-CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce---
Q 001362          812 KNDAYLFSAS-GGVISLYIVMTFKTILT-------IM--PP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---  877 (1092)
Q Consensus       812 ~dg~~l~~~s-dg~i~iwd~~~~~~~~~-------~~--~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~---  877 (1092)
                      .+|+++++-- ++.+.++.+.....+..       +.  .+ ....-.+||+| .+..|..+-+-.-+.||....+.   
T Consensus       138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l  216 (316)
T COG3204         138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL  216 (316)
T ss_pred             cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence            8888777665 57787777664432221       11  12 44667899999 66677777777777777665332   


Q ss_pred             eeEeecccc-------CCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC
Q 001362          878 VISKLEGHS-------KRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1092)
Q Consensus       878 ~~~~l~~h~-------~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  949 (1092)
                      .+.....++       ..|.++.|.+ .+.+|+-+.+++.+.-.|................+-...-.....++..++|.
T Consensus       217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~  296 (316)
T COG3204         217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN  296 (316)
T ss_pred             ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence            111111122       3466788876 45667777778878777777643222112222222221112456788888888


Q ss_pred             EEEEEeCCcEEE
Q 001362          950 RFLLVHETHLAI  961 (1092)
Q Consensus       950 ~la~~~d~~i~l  961 (1092)
                      +-+++..+-.+.
T Consensus       297 lYIvSEPnlfy~  308 (316)
T COG3204         297 LYIVSEPNLFYR  308 (316)
T ss_pred             EEEEecCCccee
Confidence            777765544433

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.89  E-value=3  Score=44.31  Aligned_cols=230  Identities=11%  Similarity=0.069  Sum_probs=111.3

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEec---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-cee-
Q 001362          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEV-  878 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~-  878 (1092)
                      ...++.|..+ ..++++..+ +.+.....|+.-..+.   .-......+.... ++..++ ++..|.|  |...+ |+. 
T Consensus        63 ~l~~I~f~~~-~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~i--y~T~DgG~tW  136 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAI--YRTTDGGKTW  136 (302)
T ss_dssp             EEEEEEEETT-EEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--E--EEESSTTSSE
T ss_pred             eEEEEEecCC-ceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcE--EEeCCCCCCe
Confidence            4567777643 445555545 3333333343332221   1222333333333 333333 4445544  33333 321 


Q ss_pred             eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCc
Q 001362          879 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH  958 (1092)
Q Consensus       879 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~  958 (1092)
                      ......-.+.+..+.-++||+++++++.-....-||-....   .........     ..|..+.|+|++.+.+++..+.
T Consensus       137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~~-----~riq~~gf~~~~~lw~~~~Gg~  208 (302)
T PF14870_consen  137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNSS-----RRIQSMGFSPDGNLWMLARGGQ  208 (302)
T ss_dssp             EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--SS-----S-EEEEEE-TTS-EEEEETTTE
T ss_pred             eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCcc-----ceehhceecCCCCEEEEeCCcE
Confidence            22233445778899999999999888766666677765422   122222211     3699999999999988888888


Q ss_pred             EEEEE-cCCceeeeee-cc--CCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccce
Q 001362          959 LAIYE-AEELTCLKQW-FP--ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus       959 i~lwd-~~~~~~~~~~-~~--~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
                      |+.=+ ....+..... .+  ...-.+..++|.+++...++|+ .|+ .+...+.|+.-.+.......+..     ++  
T Consensus       209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~-l~~S~DgGktW~~~~~~~~~~~n-----~~--  279 (302)
T PF14870_consen  209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGT-LLVSTDGGKTWQKDRVGENVPSN-----LY--  279 (302)
T ss_dssp             EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT--EEEESSTTSS-EE-GGGTTSSS----------
T ss_pred             EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-Ccc-EEEeCCCCccceECccccCCCCc-----eE--
Confidence            88877 2223222210 11  1244588999999988777665 454 45677888777666644444444     34  


Q ss_pred             EEEECCCCCCEEEEEeCCCcEEEE
Q 001362         1035 AIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus      1035 ~~~~~p~~~~~l~~~~~dg~v~~w 1058 (1092)
                      .+.|.+  ++.-.+-+.+|.|--|
T Consensus       280 ~i~f~~--~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  280 RIVFVN--PDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             EEEEEE--TTEEEEE-STTEEEEE
T ss_pred             EEEEcC--CCceEEECCCcEEEEe
Confidence            455553  2455555588877555

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.89  E-value=0.63  Score=54.78  Aligned_cols=235  Identities=12%  Similarity=0.086  Sum_probs=129.8

Q ss_pred             cCCCEEEEEe-C------CeEEEEEcCCceeeEEecC-CCCCeEEEEEcCCCCCEEEEEeCC-C-----cEEEEEcCCce
Q 001362          812 KNDAYLFSAS-G------GVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDD-S-----TILIYNARSSE  877 (1092)
Q Consensus       812 ~dg~~l~~~s-d------g~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~d-g-----~v~iwd~~~~~  877 (1092)
                      ..+.++++|+ .      ..+..||..++.-.....- ....-.++++.  ++.+.++|+.| |     ++..||..+.+
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence            3455555554 2      3488888887643322211 22233455555  56888999999 3     67788887764


Q ss_pred             e--eEeeccccCCeEEEEEcCCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCE
Q 001362          878 V--ISKLEGHSKRVTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  950 (1092)
Q Consensus       878 ~--~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~  950 (1092)
                      =  +..+...........+  +|.+.|.||.||.     |-.||..+.+......+...        .-..-.-.-+|.+
T Consensus       361 W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~i  430 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGKL  430 (571)
T ss_pred             eeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCEE
Confidence            2  2222222222222222  7889999999974     67778777553321111111        1122333456666


Q ss_pred             EEE-EeC------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCc-----EEEEEcCCCceEEeecc
Q 001362          951 FLL-VHE------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-----LSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       951 la~-~~d------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~-----i~vwd~~~~~~~~~~~~ 1018 (1092)
                      .++ |.+      .++..||..+......-...-...-.. .-.-++...+.||.|+.     |..||..+.+....   
T Consensus       431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v---  506 (571)
T KOG4441|consen  431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV---  506 (571)
T ss_pred             EEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEc---
Confidence            666 423      358889988776443211111111112 33457888888888863     77788887766522   


Q ss_pred             ccccCCCCccCcccceEEEECCCCCCEEEEEeCCC-----cEEEEeCCCCCCccccCCC
Q 001362         1019 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1072 (1092)
Q Consensus      1019 ~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~~ 1072 (1092)
                       ......     .....++..  ++...++|+.||     +|..||.  ...+|...++
T Consensus       507 -~~m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp--~~d~W~~~~~  555 (571)
T KOG4441|consen  507 -APMTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP--ETDTWTEVTE  555 (571)
T ss_pred             -ccCccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCC--CCCceeeCCC
Confidence             111111     111112222  468899999887     5677866  5556877766

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.75  E-value=2.8  Score=42.95  Aligned_cols=171  Identities=13%  Similarity=0.192  Sum_probs=108.2

Q ss_pred             ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001362          839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      +.+....+.++.|+| +.+.|++......-.|+=...|+.+.++.- .-.....+.+..+|++.++--.++.+.+..++.
T Consensus        81 i~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          81 ILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            344556699999999 777777777777777776677888877652 122345688888999988888899999998876


Q ss_pred             Ccee-eeeeeecCCCCcCC-CCCceEEEEecCCCEEEEEeCC-cEEEEEcCCce-eeee-eccCC-------CCCEEEEE
Q 001362          918 WGIQ-TCRSLQTPDGVMTL-APSETHIQFHKDQTRFLLVHET-HLAIYEAEELT-CLKQ-WFPIS-------SVPISQAT  985 (1092)
Q Consensus       918 ~~~~-~~~~~~~~~~~~~~-~~~v~~l~~s~dg~~la~~~d~-~i~lwd~~~~~-~~~~-~~~~h-------~~~v~~l~  985 (1092)
                      .... .....+..-+.... ......+||.|.+..|..+.+. -+.||.++.+. .+.. ....+       -..|+++.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            5321 11111111111111 2357899999999888887554 46777665332 1110 01111       23567777


Q ss_pred             Eec-CCCEEEEEECCCcEEEEEcCCC
Q 001362          986 FSC-DCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       986 fs~-dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
                      |.+ .+.+|+-+.+++.+.-.|....
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCCC
Confidence            775 4556666667777777776644

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.64  E-value=2.5  Score=41.51  Aligned_cols=47  Identities=23%  Similarity=0.304  Sum_probs=39.2

Q ss_pred             EEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcC
Q 001362          807 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNP  853 (1092)
Q Consensus       807 ~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~  853 (1092)
                      .+++..+|.+.++.- .++|.-.|..+|+.+..+.-+...|++++|--
T Consensus       216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            455566777766664 68999999999999999998999999999964

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.53  E-value=0.037  Score=53.75  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=71.2

Q ss_pred             CEEEEE-eCCeEEEEEcCCceee-EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecccc-CCeEE
Q 001362          815 AYLFSA-SGGVISLYIVMTFKTI-LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTG  891 (1092)
Q Consensus       815 ~~l~~~-sdg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~  891 (1092)
                      .-+++| ++|.|.+|........ .....-...|-++.-.-+++.+..+++.||.|+.|++.-++.+.....|. .++..
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~  150 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE  150 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence            334444 5899999987622111 11111223333333333356699999999999999999999888888888 67777


Q ss_pred             EEEcCCCCEEEEE--eCCCcEEEEEcCC
Q 001362          892 LVFSDALNILVSS--GGDAQIFVWDVDG  917 (1092)
Q Consensus       892 l~~spdg~~l~s~--s~Dg~i~iwd~~~  917 (1092)
                      +..+..++.++++  |.|..++.|++..
T Consensus       151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  151 LIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eEEecCCceEEeeccccchhhhhcchhh
Confidence            7777777788877  8888888888875

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.45  E-value=0.058  Score=38.58  Aligned_cols=31  Identities=19%  Similarity=0.379  Sum_probs=28.7

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEEcc
Q 001362          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH  426 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~  426 (1092)
                      ...|.+++|+|...+||.++.+|.|.++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4579999999999999999999999999993

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.45  E-value=2.8  Score=41.13  Aligned_cols=136  Identities=14%  Similarity=0.100  Sum_probs=77.5

Q ss_pred             ccceeEEEEecCCCcEEEEEEeCC---------CcEEEEECCCCceeEEEecCCcCeEEEeecccCCc-cEEEEEecCCe
Q 001362          441 VGNVNDLAFSAPCKQISVITCGDD---------KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGK  510 (1092)
Q Consensus       441 ~~~v~~~~~s~d~~~l~l~s~~~d---------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~  510 (1092)
                      ..+.+.-..+|+|+  +++-.-.|         |.++.|-.  +..+..+...-.--+.++|.  .+. .+.+.-+.+-.
T Consensus       108 knR~NDgkvdP~Gr--yy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd--~d~K~fY~iDsln~~  181 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGR--YYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWD--SDAKKFYYIDSLNYE  181 (310)
T ss_pred             hcccccCccCCCCc--eeeeeeccccccccccccEEEEecc--CCCceeeehhccCCcccccc--ccCcEEEEEccCceE
Confidence            44667778899999  43222112         22333321  11111111122223455664  233 34455666777


Q ss_pred             EEEEEcC--CC-----CceEEecC----CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC
Q 001362          511 IKAWLYD--SL-----GARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN  579 (1092)
Q Consensus       511 i~vwd~~--~~-----~~~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~  579 (1092)
                      |.-||.+  ++     +.+..+..    .......+++..+|+..+++-.    .++|+..|+.+|+.+..+.-..   .
T Consensus       182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt---~  254 (310)
T KOG4499|consen  182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPT---P  254 (310)
T ss_pred             EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCC---C
Confidence            8778743  22     22222222    1112345666778887777764    5569999999999999988776   8


Q ss_pred             ceEEEEEcCC
Q 001362          580 SVSVVHFDTA  589 (1092)
Q Consensus       580 ~v~~~~~~p~  589 (1092)
                      .+++++|.-.
T Consensus       255 qitsccFgGk  264 (310)
T KOG4499|consen  255 QITSCCFGGK  264 (310)
T ss_pred             ceEEEEecCC
Confidence            8999999754

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.40  E-value=0.042  Score=39.29  Aligned_cols=33  Identities=24%  Similarity=0.426  Sum_probs=29.3

Q ss_pred             CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCe
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK  369 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~  369 (1092)
                      ..|.+++|+|... |+|.|+.+|.|.|+.+ +++.
T Consensus        12 ~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   12 SRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence            4799999999998 8999999999999998 5543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.20  E-value=3.9  Score=49.69  Aligned_cols=160  Identities=15%  Similarity=0.121  Sum_probs=95.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcCeE-------------EEeecccCCccEEEEEec----------CCeEEE
Q 001362          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY-------------SLCPHAKENIHFIFSISV----------DGKIKA  513 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~v  513 (1092)
                      .++.++.|+.+.-.|.++|+.+..+.. .+.|.             .+.-.|.-.+..++.|+.          +|.|+-
T Consensus       262 rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       262 RIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             EEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            477788899999999999999877632 22221             000001001235666643          688999


Q ss_pred             EEcCCCCceEEecCC---------CC--------ce-EEEEEccCCCEEEEEecC--------------CCCceeEEEEe
Q 001362          514 WLYDSLGARVDYDAP---------GL--------GC-TRMAYSANGRRLFSCGTS--------------KEGESFLVEWN  561 (1092)
Q Consensus       514 wd~~~~~~~~~~~~~---------~~--------~i-~~~~~s~dg~~l~~~~~~--------------~~~~~~i~iwd  561 (1092)
                      +|..+++....+...         .+        .+ ..+++.++...++....+              ..-.+.|.-.|
T Consensus       341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD  420 (764)
T TIGR03074       341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD  420 (764)
T ss_pred             EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence            999999887765421         00        11 234555655555543221              01235577789


Q ss_pred             CCCCeEEEEEeecc--ccC----CceEEEEEcC-CCC---EEEEEeCCCcEEEEECCCCceEEEEe
Q 001362          562 ESEGAIKRTYQGLQ--LQH----NSVSVVHFDT-AKD---QILAAGDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       562 ~~~~~~~~~~~~~~--~~~----~~v~~~~~~p-~~~---~l~~~s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                      ..||+.+-.++...  ...    ....-+.+.. +|+   .++.++.+|.++++|.++|+.+...+
T Consensus       421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            99999887776522  000    1111222322 443   78889999999999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.08  E-value=4.7  Score=41.34  Aligned_cols=192  Identities=11%  Similarity=0.070  Sum_probs=112.7

Q ss_pred             ccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001362          735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1092)
Q Consensus       735 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg  814 (1092)
                      .-...+.|..+|..+-+++.-|.-.+                    +.+++.+|+......++.   ..--..+++..|.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l--------------------~~~d~~tg~~~~~~~l~~---~~FgEGit~~~d~  101 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSL--------------------RKVDLETGKVLQSVPLPP---RYFGEGITILGDK  101 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEE--------------------EEEETTTSSEEEEEE-TT---T--EEEEEEETTE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEE--------------------EEEECCCCcEEEEEECCc---cccceeEEEECCE
Confidence            34567888888888888877764333                    334556666555555542   2333456666665


Q ss_pred             CEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecccc-----CCe
Q 001362          815 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-----KRV  889 (1092)
Q Consensus       815 ~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~~V  889 (1092)
                      -+.++--++...+||..+.+.+.++.- .+.=..++.   |++.|+.......++++|..+-+....+.-..     ..+
T Consensus       102 l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L  177 (264)
T PF05096_consen  102 LYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL  177 (264)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred             EEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence            555566689999999999999988863 356667773   56677777767789999998877665554321     234


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC-------CCCcCCCCCceEEEEecCCCEEEEE
Q 001362          890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP-------DGVMTLAPSETHIQFHKDQTRFLLV  954 (1092)
Q Consensus       890 ~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~v~~l~~s~dg~~la~~  954 (1092)
                      .-|.+- +|...|=.=....|..-|..+|+.....-+...       ........-...+|+.|.+..+.+.
T Consensus       178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT  248 (264)
T PF05096_consen  178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT  248 (264)
T ss_dssp             EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred             EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence            446665 666666555556677777777765543222111       0111112357899999887766653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=95.07  E-value=11  Score=45.58  Aligned_cols=106  Identities=13%  Similarity=0.102  Sum_probs=66.7

Q ss_pred             EEEecCCCEEEEEeCCeEEEEEcCCceeeEEe--cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-ceeeEeecc
Q 001362          808 FALSKNDAYLFSASGGVISLYIVMTFKTILTI--MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG  884 (1092)
Q Consensus       808 ~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~  884 (1092)
                      .|+.|...++.+|-+..+++||+-..++++..  +.....|+.+.+   .+..+++|...-.|.++..+. ++.+..+..
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence            46677777888888999999999877766543  323566777777   455777777666565544332 233444432


Q ss_pred             --ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001362          885 --HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       885 --h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~  917 (1092)
                        -...|+++.+- |-..+|.+..=|.+.+-.+..
T Consensus      1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             CCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence              22346666665 455777676666665555543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.01  E-value=2.4  Score=46.29  Aligned_cols=188  Identities=13%  Similarity=0.138  Sum_probs=94.9

Q ss_pred             EEecCCCEEEEEe---C----CeEEEEEcCCceeeEEecCCC---CCeEEEEEcCCCCCEEEEEe---------------
Q 001362          809 ALSKNDAYLFSAS---G----GVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGM---------------  863 (1092)
Q Consensus       809 ~~s~dg~~l~~~s---d----g~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~lasg~---------------  863 (1092)
                      -.-|+|+.++++-   +    |.+.+.|-++.+.........   ..-..+-+.| ..+.++|..               
T Consensus       136 Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d  214 (461)
T PF05694_consen  136 HCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPED  214 (461)
T ss_dssp             EE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTT
T ss_pred             eecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhH
Confidence            3446888887762   1    458899998888877765432   2345677788 677777743               


Q ss_pred             -----CCCcEEEEEcCCceeeEeecccc--CCeEEEEEcCC--CCE-EEEEeCCCcEEEE-EcCCCceeeeeeeecCCCC
Q 001362          864 -----DDSTILIYNARSSEVISKLEGHS--KRVTGLVFSDA--LNI-LVSSGGDAQIFVW-DVDGWGIQTCRSLQTPDGV  932 (1092)
Q Consensus       864 -----~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~spd--g~~-l~s~s~Dg~i~iw-d~~~~~~~~~~~~~~~~~~  932 (1092)
                           ...++.+||+.+.+.++++.--.  .....+.|..+  ..+ ++.+.-...|..| ..+.++....+++..+...
T Consensus       215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~  294 (461)
T PF05694_consen  215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK  294 (461)
T ss_dssp             HHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred             hhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence                 23489999999999998886422  23556777654  444 3333334444444 4356665555566554321


Q ss_pred             c------CC-------CCCceEEEEecCCCEEEEE--eCCcEEEEEcCCce---eeeeeccC-------C--------CC
Q 001362          933 M------TL-------APSETHIQFHKDQTRFLLV--HETHLAIYEAEELT---CLKQWFPI-------S--------SV  979 (1092)
Q Consensus       933 ~------~~-------~~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~---~~~~~~~~-------h--------~~  979 (1092)
                      .      ..       .+-|+.+.+|.|.++|.++  ..|.|+.||+....   ...++..+       |        .+
T Consensus       295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G  374 (461)
T PF05694_consen  295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG  374 (461)
T ss_dssp             --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S
T ss_pred             cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC
Confidence            0      00       2358999999999999985  68999999997543   33222211       0        23


Q ss_pred             CEEEEEEecCCCEEEEEE
Q 001362          980 PISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       980 ~v~~l~fs~dg~~l~t~~  997 (1092)
                      ...-+..|-||+.|...+
T Consensus       375 gPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  375 GPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ----EEE-TTSSEEEEE-
T ss_pred             CCCeEEEccCCeEEEEEe
Confidence            346678889998887654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=94.87  E-value=12  Score=45.18  Aligned_cols=122  Identities=12%  Similarity=-0.033  Sum_probs=79.4

Q ss_pred             EEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCC-CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC-ceEEeeccc
Q 001362          942 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNL-EVQCRILST 1019 (1092)
Q Consensus       942 l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~-~~~~~~~~~ 1019 (1092)
                      .|+.|-..++++|-...+++||+...+.++.....+ ...|+.+.+  .+..+++|...-+|.++..... +.+-.+. .
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fa-d 1015 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFA-D 1015 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEe-C
Confidence            567777779999999999999999888777655444 566777765  4567777776666665554432 3332332 1


Q ss_pred             cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCccccCCCCCc
Q 001362         1020 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEI 1075 (1092)
Q Consensus      1020 ~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~ 1075 (1092)
                      ...|..     |..   ++.- |-..+|.|..=|.+.+-.++..-++-+...|.+.
T Consensus      1016 D~~pR~-----Vt~---~~~l-D~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~~ 1062 (1205)
T KOG1898|consen 1016 DPVPRH-----VTA---LELL-DYDTVAGADRFGNIAVVRIPPDVSEEASEDPTEL 1062 (1205)
T ss_pred             CCccce-----eeE---EEEe-cCCceeeccccCcEEEEECCCcchhhhccCCccc
Confidence            112211     222   2222 4578999999999999999887766655555553

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.85  E-value=0.087  Score=62.39  Aligned_cols=102  Identities=12%  Similarity=0.124  Sum_probs=75.6

Q ss_pred             cEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC
Q 001362          500 HFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH  578 (1092)
Q Consensus       500 ~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~  578 (1092)
                      ..++.|+..|.+-..|+...-. ...-....++|++++|+.+|+.++.|-.    +|.|.+||...++..+.+..+....
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~----~G~V~v~D~~~~k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLG----DGHVTVWDMHRAKILKVITEHGAPV  175 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccC----CCcEEEEEccCCcceeeeeecCCcc
Confidence            4688888889888887765322 1222334568999999999999998865    6779999999999999888777444


Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001362          579 NSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       579 ~~v~~~~~~p~~~~l~~~s~dg~i~iwd~  607 (1092)
                      ..+..+.+..++..++++...|.  +|.+
T Consensus       176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            55666666667777888777776  5543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.75  E-value=7  Score=43.58  Aligned_cols=139  Identities=14%  Similarity=0.159  Sum_probs=79.3

Q ss_pred             CCeeEEEEecCCCEEEEEe------------C-CeEEEEEcCC--ce--eeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001362          803 EAVPCFALSKNDAYLFSAS------------G-GVISLYIVMT--FK--TILTIMPPSPTATSLAFNPHDNNVIAIGMDD  865 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~s------------d-g~i~iwd~~~--~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d  865 (1092)
                      .....|+|.++|+++++-.            . +.|.+++-.+  |+  ....+.........+++.+ ++ +++ +...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence            3456899999999887752            1 2677776542  32  2234443344568899998 77 444 4444


Q ss_pred             CcEEEEEcCCc-----e--e-eEeecc----ccCCeEEEEEcCCCCEEEEEeCC-------------------CcEEEEE
Q 001362          866 STILIYNARSS-----E--V-ISKLEG----HSKRVTGLVFSDALNILVSSGGD-------------------AQIFVWD  914 (1092)
Q Consensus       866 g~v~iwd~~~~-----~--~-~~~l~~----h~~~V~~l~~spdg~~l~s~s~D-------------------g~i~iwd  914 (1092)
                      ...++.|....     +  . +..+..    +......++|.|||.+.++.+..                   |.|.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            33334344321     1  1 122322    13346789999999988876621                   3344444


Q ss_pred             cCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001362          915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~  953 (1092)
                      .++++.   ..+.  .+..    ....++|+++|+++++
T Consensus       171 pdg~~~---e~~a--~G~r----np~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       171 PDGGKL---RVVA--HGFQ----NPYGHSVDSWGDVFFC  200 (367)
T ss_pred             cCCCeE---EEEe--cCcC----CCccceECCCCCEEEE
Confidence            444331   1221  2222    3568999999999887

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.68  E-value=12  Score=45.18  Aligned_cols=94  Identities=10%  Similarity=0.034  Sum_probs=56.0

Q ss_pred             CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCC-ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee
Q 001362          801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  879 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~  879 (1092)
                      ....|..+.++|+|+++|..+...|.|..+.. +.....+.+....|.|=.+.- +..++                    
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~--------------------  141 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF--------------------  141 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc--------------------
Confidence            44678999999999999999877777766532 111111222222222222211 11111                    


Q ss_pred             EeeccccCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCC
Q 001362          880 SKLEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       880 ~~l~~h~~~V~~l~~spd---g~~l~s~s~Dg~i~iwd~~~  917 (1092)
                        ...+...|..+.|+|.   +..|+.-..|+++|+||+..
T Consensus       142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence              0123456777888875   47888888888899998865

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.51  E-value=0.88  Score=52.89  Aligned_cols=113  Identities=13%  Similarity=0.180  Sum_probs=78.2

Q ss_pred             ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe-cCCcCeEEEeecccCCccEEEEEecCCeEEEEEc-----
Q 001362          443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY-----  516 (1092)
Q Consensus       443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~-----  516 (1092)
                      ...-+.-|.-++  ..+.-+...++.|||...+...++-. ...+.|.++.|...++++.+++.+..+.|.++--     
T Consensus        31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            344455555555  34444455689999999887654432 3578899999999999999999999999999843     


Q ss_pred             CCCCc----eE--EecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001362          517 DSLGA----RV--DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       517 ~~~~~----~~--~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      ....+    +.  .+.. ..++|...+|.++|..++.++.      .+.++|..
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk~  156 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDKW  156 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECCC
Confidence            11111    11  2222 3367889999999998887643      48888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.41  E-value=0.062  Score=62.07  Aligned_cols=168  Identities=15%  Similarity=0.172  Sum_probs=98.0

Q ss_pred             ecccCCCCceEEeec----CCCceEEEEEcCCCcEEEEecC--CCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001362          329 TLIEGSSSPMSMDFH----PVQHTLLLVGTNVGDTGLWDVN--SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1092)
Q Consensus       329 ~l~~h~~~V~~v~~s----pdg~~llasg~~d~~v~iwd~~--~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l  402 (1092)
                      .++|..++|-.++|-    |.+. .+     -|...|||+.  .|+......++              ....-...+.-+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~-~~-----vg~lfVy~vd~l~G~iq~~l~v~--------------~~~p~gs~~~~V  186 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR-RL-----VGELFVYDVDVLQGEIQPQLEVT--------------PITPYGSDPQLV  186 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH-HH-----hhhhheeehHhhccccccceEEe--------------ecCcCCCCccee
Confidence            345677788888883    4443 12     2778899886  45444332222              122334455666


Q ss_pred             EECC---CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEE-----------EecCCCcEEEEEEeCCCcEE
Q 001362          403 VWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA-----------FSAPCKQISVITCGDDKTIK  468 (1092)
Q Consensus       403 ~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~-----------~s~d~~~l~l~s~~~d~~i~  468 (1092)
                      .|.|   +.-++..+-.+++|++.++.+...  .  -+.+|...+..++           .||||+  .++.+..||.++
T Consensus       187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~  260 (1283)
T KOG1916|consen  187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVG  260 (1283)
T ss_pred             eecccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccc
Confidence            6665   667777787888888877765432  1  2446777666655           488998  889999999888


Q ss_pred             EEECC-----CCceeEEEecCCc-CeEEEeecccC-------CccEEEEEec-CCeEEEEEcCCCCce
Q 001362          469 VWDAV-----TGSRTYSFEGHGA-PVYSLCPHAKE-------NIHFIFSISV-DGKIKAWLYDSLGAR  522 (1092)
Q Consensus       469 vwd~~-----~~~~~~~~~~~~~-~v~~~~~~~~~-------~~~~l~s~~~-dg~i~vwd~~~~~~~  522 (1092)
                      .|.+-     .-+|++..+.|++ +-.|.-++...       --.++++++. +..+++|.-...++.
T Consensus       261 f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  261 FYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            87643     3355666777763 32222221110       0123444444 344788865544443

>PHA03098 kelch-like protein; Provisional

Probab=94.16  E-value=1.9  Score=51.19  Aligned_cols=153  Identities=8%  Similarity=-0.017  Sum_probs=73.7

Q ss_pred             CccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC--CceeEEEEeCCCCeEEEE
Q 001362          498 NIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRT  570 (1092)
Q Consensus       498 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~  570 (1092)
                      ++.+.+.|+.++     .+..||..+.+-...-..+.......+..-+++..+.||....  ....+..||+.+++....
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            456777777652     3666776654322211111111111122345666666663222  125688999887655332


Q ss_pred             EeeccccCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001362          571 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       571 ~~~~~~~~~~v~~~~~~p~~~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      -.... ..... ++ ...++..++.|+.+        ..+.+||..+.+....-...........+.  -+++.++.|+.
T Consensus       422 ~~~p~-~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~  496 (534)
T PHA03098        422 SPLPI-SHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGD  496 (534)
T ss_pred             CCCCc-cccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCC
Confidence            21111 01111 22 22345555556532        238889988876554322211111111222  36777777765


Q ss_pred             C-----CeEEEEECCCCc
Q 001362          643 E-----NRIKILETPESN  655 (1092)
Q Consensus       643 d-----g~i~iw~~~~~~  655 (1092)
                      +     ..+.+||..+.+
T Consensus       497 ~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        497 KYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             cCCcccceeEEEeCCCCE
Confidence            4     467778877654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.12  E-value=1.1  Score=53.92  Aligned_cols=92  Identities=15%  Similarity=0.247  Sum_probs=62.5

Q ss_pred             CCCEEEEEEecCCCEEEEEECCCcEEEEEcCC----------C--ceEEeecc-ccccCCCCccCcccceEEEECCC--C
Q 001362          978 SVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------L--EVQCRILS-TAYLRPTTSCLHVYPHAIAAHPL--K 1042 (1092)
Q Consensus       978 ~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~----------~--~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~p~--~ 1042 (1092)
                      .-.|..+.++++|++|+..|..| |.|-.+..          |  ...|+..+ ...+-.  .+..+....+.|||.  +
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~--~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT--SNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhcc--CCCCceEEEEEEcCCCCC
Confidence            56788999999999999988765 55555532          1  22333321 111111  133355568899995  3


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCccccCCC
Q 001362         1043 PTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1072 (1092)
Q Consensus      1043 ~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~ 1072 (1092)
                      +..|++-+.|+++++||+.+...-|.+.+-
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~~~p~~v~~~  190 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDPQHPWQVLSL  190 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCCCCCeEEEEc
Confidence            578999999999999999887766777653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA03098 kelch-like protein; Provisional

Probab=94.10  E-value=1.9  Score=51.22  Aligned_cols=182  Identities=10%  Similarity=0.042  Sum_probs=89.8

Q ss_pred             cEEEEEcCCceeeE--eeccccCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCcCCCCCc
Q 001362          867 TILIYNARSSEVIS--KLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE  939 (1092)
Q Consensus       867 ~v~iwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~l~s~s~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  939 (1092)
                      .+..||..+.+-..  .+.........+.  -+++.++.||.+     ..+..||..+++......+..+.        .
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r--------~  381 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR--------Y  381 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC--------c
Confidence            46677776654321  1111111122222  367788888865     34777888776543322221111        1


Q ss_pred             eEEEEecCCCEEEEEe---C----CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCC--------cEEE
Q 001362          940 THIQFHKDQTRFLLVH---E----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG--------TLSI 1004 (1092)
Q Consensus       940 ~~l~~s~dg~~la~~~---d----~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg--------~i~v 1004 (1092)
                      ...+..-++++.+.|.   +    +.+..||..+.+-...-... ...-...+...+++.++.||.++        .+.+
T Consensus       382 ~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~  460 (534)
T PHA03098        382 NPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP-ISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVES  460 (534)
T ss_pred             cceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC-ccccCceEEEECCEEEEECCccCCCCCcccceEEE
Confidence            1122334566666642   1    35889998776543221101 11111122345677777776432        3788


Q ss_pred             EEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCC-----CcEEEEeCCCCCCccccCCC
Q 001362         1005 HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPP 1072 (1092)
Q Consensus      1005 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d-----g~v~~w~~~~~~~~~~~~~~ 1072 (1092)
                      ||..+++....-    ..+..    ......+..   ++..++.|+.+     +.|.++|+.  ...|...++
T Consensus       461 yd~~~~~W~~~~----~~~~~----r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~  520 (534)
T PHA03098        461 YNPVTNKWTELS----SLNFP----RINASLCIF---NNKIYVVGGDKYEYYINEIEVYDDK--TNTWTLFCK  520 (534)
T ss_pred             ecCCCCceeeCC----CCCcc----cccceEEEE---CCEEEEEcCCcCCcccceeEEEeCC--CCEEEecCC
Confidence            888877654211    11111    011111222   35778888765     467888874  456876644

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.03  E-value=0.18  Score=49.22  Aligned_cols=106  Identities=12%  Similarity=0.053  Sum_probs=63.6

Q ss_pred             CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEE-EEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001362          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL-AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~-~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  485 (1092)
                      -+..+++|+.+|.|.+|++..-......  ...-...|.++ .-..++.  +..+++.|+.|+.|++.-++.+.....|.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~--~~s~~e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~~g~~g~h~  144 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDR--VCSGEESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKVLGYVGQHN  144 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHh--hhcccccceeccccccccc--eeEEeccCCceeeeccccCceeeeecccc
Confidence            3567899999999999998732111100  11112223333 2233344  67888999999999999998887777776


Q ss_pred             -cCeEEEeecccCCccEEEEE--ecCCeEEEEEcCC
Q 001362          486 -APVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDS  518 (1092)
Q Consensus       486 -~~v~~~~~~~~~~~~~l~s~--~~dg~i~vwd~~~  518 (1092)
                       .++......  ..+.++..+  |.|..++.|++..
T Consensus       145 ~~~~e~~ivv--~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  145 FESGEELIVV--GSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CCCcceeEEe--cCCceEEeeccccchhhhhcchhh
Confidence             444333332  123455555  5566666666543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.01  E-value=1.3  Score=51.63  Aligned_cols=122  Identities=8%  Similarity=0.086  Sum_probs=76.4

Q ss_pred             ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec-cccCCeEEEEEc--CCCCEEEEEeCCCcEEEEEc
Q 001362          839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHSKRVTGLVFS--DALNILVSSGGDAQIFVWDV  915 (1092)
Q Consensus       839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~s--pdg~~l~s~s~Dg~i~iwd~  915 (1092)
                      +...-..++-+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|.  |||+.+++.|..+.|.++.-
T Consensus        25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            333334455555555 45555555555589999999886432222 357889999985  78999999999999999864


Q ss_pred             CC----CceeeeeeeecC--CCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEc
Q 001362          916 DG----WGIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA  964 (1092)
Q Consensus       916 ~~----~~~~~~~~~~~~--~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~  964 (1092)
                      ..    ........++..  ..+.+  .+|....|.++|.++++ .++++.|+|-
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV~-sGNqlfv~dk  155 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVVG-SGNQLFVFDK  155 (631)
T ss_pred             cchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEEE-eCCEEEEECC
Confidence            21    111111122221  12221  36889999999986654 4667888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.60  E-value=16  Score=41.48  Aligned_cols=58  Identities=12%  Similarity=0.058  Sum_probs=41.6

Q ss_pred             EEEEecCCCEEEEEeC--CcEEEEEcCCc--eeeeeeccCCCCCEEEEEEecCCCEEEEEEC
Q 001362          941 HIQFHKDQTRFLLVHE--THLAIYEAEEL--TCLKQWFPISSVPISQATFSCDCRMVFTSFV  998 (1092)
Q Consensus       941 ~l~~s~dg~~la~~~d--~~i~lwd~~~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~  998 (1092)
                      -+||.|....+|++++  +.|.||.+...  ..++.+.-....+...++|-.|+-.|+..|.
T Consensus       343 liAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGk  404 (671)
T PF15390_consen  343 LIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGK  404 (671)
T ss_pred             eeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecc
Confidence            4899999999999655  57999988642  2233333334677888999988877776654

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.58  E-value=8  Score=39.22  Aligned_cols=193  Identities=12%  Similarity=0.095  Sum_probs=124.7

Q ss_pred             CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001362          845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR  924 (1092)
Q Consensus       845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~  924 (1092)
                      .-..++-+| ||..-+++...|.|--.|-.+|+....--+....-..+..-|||..-++-+.. .|.-.|-++.+...  
T Consensus        63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~--  138 (353)
T COG4257          63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR--  138 (353)
T ss_pred             CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE--
Confidence            345677888 88888888888888888888888766555555666778888998877764433 45555665555333  


Q ss_pred             eeecCCCCcCCCCCceEEEEecCCCEEEEEeC----------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEE
Q 001362          925 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE----------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF  994 (1092)
Q Consensus       925 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d----------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~  994 (1092)
                       ...+..+..  .......|.++|++-.++..          +.|++|+..           .......|+..|||..-+
T Consensus       139 -f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-----------qG~gpyGi~atpdGsvwy  204 (353)
T COG4257         139 -FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-----------QGGGPYGICATPDGSVWY  204 (353)
T ss_pred             -eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------CCCCCcceEECCCCcEEE
Confidence             222222222  35788999999999888543          335555543           244566788999999888


Q ss_pred             EEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001362          995 TSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus       995 t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
                      +.-.+..|..-|..++.. ..+.....+..+       +..+-.+|+ +..-++....+.++.+|.....
T Consensus       205 aslagnaiaridp~~~~a-ev~p~P~~~~~g-------sRriwsdpi-g~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         205 ASLAGNAIARIDPFAGHA-EVVPQPNALKAG-------SRRIWSDPI-GRAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             EeccccceEEcccccCCc-ceecCCCccccc-------ccccccCcc-CcEEEeccCCceeeEeCccccc
Confidence            877788888888777722 222222221111       122345553 6677777777778777765433

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.52  E-value=0.052  Score=62.62  Aligned_cols=191  Identities=12%  Similarity=0.032  Sum_probs=104.8

Q ss_pred             CCcEEEEEcCCce-eeEeeccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCC--CceeeeeeeecCCCCcCCCCCce
Q 001362          865 DSTILIYNARSSE-VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSET  940 (1092)
Q Consensus       865 dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~  940 (1092)
                      .+.+++-+..+.. ....++|..+.|-.+.|-.- -..++  -.-|.+.||+++-  |+......+......-.....|.
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~  187 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS  187 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence            3456666655432 22345677788888888532 11222  3346789999863  44333333332222222113455


Q ss_pred             EEEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCCCEEEEE-----------EecCCCEEEEEECCCcEEEEEcC
Q 001362          941 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQAT-----------FSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       941 ~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~-----------fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
                      .+-|-+...++..+ .++.+++..+.+...  .++.+|+.+++.++           .||||+.+++++.||.+++|.+.
T Consensus       188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  188 WCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             ecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            55556667666665 456777766654333  34556877766654           48999999999999999999875


Q ss_pred             -CCceEEeeccccccCCCCccC--------cccceEEEECCCCCCEEEEEeCC-CcEEEEeCCCCC
Q 001362         1009 -NLEVQCRILSTAYLRPTTSCL--------HVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPG 1064 (1092)
Q Consensus      1009 -~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~p~~~~~l~~~~~d-g~v~~w~~~~~~ 1064 (1092)
                       +|+...++. +.|.++..|..        .+.+..+.+.    .+++++++- ..+.+|.-...+
T Consensus       266 i~g~~~~rcl-hewkphd~~p~vC~lc~~~~~~~v~i~~w----~~~Itttd~nre~k~w~~a~w~  326 (1283)
T KOG1916|consen  266 ITGKIVHRCL-HEWKPHDKHPRVCWLCHKQEILVVSIGKW----VLRITTTDVNREEKFWAEAPWQ  326 (1283)
T ss_pred             eeccccHhhh-hccCCCCCCCceeeeeccccccCCcccee----EEEEecccCCcceeEeeccchh
Confidence             444433332 44555441111        1111111121    235555544 468899865443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.51  E-value=3.1  Score=40.89  Aligned_cols=150  Identities=11%  Similarity=0.095  Sum_probs=83.5

Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE----eCC---cEEEE-EcC----C
Q 001362          899 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HET---HLAIY-EAE----E  966 (1092)
Q Consensus       899 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~----~d~---~i~lw-d~~----~  966 (1092)
                      +.|+.+.....|.+|++...+......+.+.       +.|..++++.-|++|++-    ...   .+++| ++.    .
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~  101 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE  101 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-------hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence            3444445667799999995554333333333       258899999999999993    122   46665 222    1


Q ss_pred             ceeeeeeccCC---------------------CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCce-EEeeccccccCC
Q 001362          967 LTCLKQWFPIS---------------------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV-QCRILSTAYLRP 1024 (1092)
Q Consensus       967 ~~~~~~~~~~h---------------------~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~-~~~~~~~~~~~~ 1024 (1092)
                      ...++.-..||                     +.++.+++-.|-..-|+.|+ ++.+.+|.+..... ...+....+...
T Consensus       102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~  180 (215)
T PF14761_consen  102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERS  180 (215)
T ss_pred             CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhh
Confidence            22222212232                     44566666666433455454 56899998876655 322222222111


Q ss_pred             C-CccCcccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001362         1025 T-TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus      1025 ~-~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
                      . .|...+.+..+++-   ++++|.. ++-.+++..+
T Consensus       181 l~~~~~~~~p~~v~ic---~~yiA~~-s~~ev~Vlkl  213 (215)
T PF14761_consen  181 LIDHIDNFKPTQVAIC---EGYIAVM-SDLEVLVLKL  213 (215)
T ss_pred             hhheecCceEEEEEEE---eeEEEEe-cCCEEEEEEE
Confidence            1 13334556666666   3566665 4566777665

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.40  E-value=1.2  Score=48.92  Aligned_cols=111  Identities=16%  Similarity=0.114  Sum_probs=70.6

Q ss_pred             CCCEEEEEEecCCCEEEEEECCCcEEEEE---------cCCCc--eEEeeccccccCCCCccCcccceEEEECCCC--CC
Q 001362          978 SVPISQATFSCDCRMVFTSFVDGTLSIHE---------ASNLE--VQCRILSTAYLRPTTSCLHVYPHAIAAHPLK--PT 1044 (1092)
Q Consensus       978 ~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd---------~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~--~~ 1044 (1092)
                      .-.|..+..|+.|..++-.|.+|.+.++=         +++|+  ..|+....+ ..--.++.++....++|||+.  ..
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~-~~~ftss~~ltl~Qa~WHP~S~~D~  181 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA-ERFFTSSTSLTLKQAAWHPSSILDP  181 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc-ceeeccCCceeeeeccccCCccCCc
Confidence            45677888899999999999998554432         23342  233322111 000012345666778999963  46


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCccccCCCCCcccCCCCCCcccccC
Q 001362         1045 QFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRA 1089 (1092)
Q Consensus      1045 ~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1089 (1092)
                      .|+.-+.|..|++|++++...-|..++|.-..+.-...-+=|+.+
T Consensus       182 hL~iL~sdnviRiy~lS~~telylqpgepgRS~tn~Si~sFGe~~  226 (741)
T KOG4460|consen  182 HLVLLTSDNVIRIYSLSEPTELYLQPGEPGRSPTNVSILSFGEEE  226 (741)
T ss_pred             eEEEEecCcEEEEEecCCcchhhccCCCcCCCCccceeeccCCcc
Confidence            788889999999999998888888876655444433333444443

>PRK13684 Ycf48-like protein; Provisional

Probab=93.10  E-value=16  Score=40.02  Aligned_cols=153  Identities=19%  Similarity=0.164  Sum_probs=92.4

Q ss_pred             CCCeeEEEEecCCCEEEEEeCCeEEEE-EcCCceeeEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee
Q 001362          802 QEAVPCFALSKNDAYLFSASGGVISLY-IVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  879 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~sdg~i~iw-d~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~  879 (1092)
                      ...+.++.+.+++.+++++..|.+..- |- .++.-.. .......++++++.+ +++.+++| ..|.+++=..+.|..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCcc
Confidence            456788999999999888888865532 22 2221222 223446789999999 78777665 4676653234444322


Q ss_pred             Eeecc----ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe
Q 001362          880 SKLEG----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH  955 (1092)
Q Consensus       880 ~~l~~----h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~  955 (1092)
                      .....    -...+.++++.|++..++ ++.+|.|. ...+.++  ....+....+..   .....+.|..+++.++++.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~--tW~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~  321 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGK--TWEKDPVGEEVP---SNFYKIVFLDPEKGFVLGQ  321 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCC--CCeECCcCCCCC---cceEEEEEeCCCceEEECC
Confidence            21111    123578899999877655 55677554 4445433  111221111111   2477888888999999999


Q ss_pred             CCcEEEEEc
Q 001362          956 ETHLAIYEA  964 (1092)
Q Consensus       956 d~~i~lwd~  964 (1092)
                      .|.|--|+-
T Consensus       322 ~G~il~~~~  330 (334)
T PRK13684        322 RGVLLRYVG  330 (334)
T ss_pred             CceEEEecC
Confidence            898877763

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.08  E-value=5.3  Score=46.38  Aligned_cols=185  Identities=12%  Similarity=0.137  Sum_probs=99.2

Q ss_pred             eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe--e--ccccCCeEEEEEcCCCC
Q 001362          824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALN  899 (1092)
Q Consensus       824 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~spdg~  899 (1092)
                      .|+||++. |..+..+.-..+.+..+.|+.  ..-|++...+|++++|++.. +.+..  .  +.....|..+.|..+|-
T Consensus        65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             eEEEEecc-ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence            37888874 555555443445888999996  45666788999999999873 32222  1  22233455566666664


Q ss_pred             EEEEEeCCCcE-EEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCE--EEEEeC--CcEEEEEcCCceeeeeec
Q 001362          900 ILVSSGGDAQI-FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLVHE--THLAIYEAEELTCLKQWF  974 (1092)
Q Consensus       900 ~l~s~s~Dg~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~--la~~~d--~~i~lwd~~~~~~~~~~~  974 (1092)
                      .+.+.  +|.+ .+-+++.....   .+...++...   .-.+....+++..  +...-+  -...++..+.+......+
T Consensus       141 avlt~--~g~v~~i~~~~~~~~~---~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~  212 (829)
T KOG2280|consen  141 AVLTV--SGQVILINGVEEPKLR---KMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL  212 (829)
T ss_pred             EEEec--CCcEEEEcCCCcchhh---hCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence            44443  3333 33333331111   1111111111   1123333333221  111111  011222222221111111


Q ss_pred             cCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001362          975 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus       975 ~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
                      ....+.+..+..||+.++|+--..+|.|.+-+.+..+..+.+....
T Consensus       213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~  258 (829)
T KOG2280|consen  213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD  258 (829)
T ss_pred             CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCC
Confidence            1113577889999999999999999999999999888888887433

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.93  E-value=3.4  Score=44.67  Aligned_cols=145  Identities=8%  Similarity=0.041  Sum_probs=89.8

Q ss_pred             eEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc--e-eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001362          846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSS--E-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT  922 (1092)
Q Consensus       846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~--~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~  922 (1092)
                      .+.+-|.. .++.|+ +...|.+.=|-....  . ++..-....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus        25 sngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l  102 (657)
T KOG2377|consen   25 SNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL  102 (657)
T ss_pred             ccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence            34556654 333333 334455555655432  1 222222356799999999999999999999999999986543222


Q ss_pred             eeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEE
Q 001362          923 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       923 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~  997 (1092)
                      ........+.    ..|....|+.. .-+|...+..+-+|-....+.--.....|...|.-..|.++-+.++-++
T Consensus       103 ~~~~~ck~k~----~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  103 EYTQECKTKN----ANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             HHHHHhccCc----ceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            1111111111    24888888877 6666666777777776544333333556788888888999887655443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.82  E-value=18  Score=39.88  Aligned_cols=228  Identities=10%  Similarity=0.079  Sum_probs=101.3

Q ss_pred             CCCEEEEEe-CCCEEEEEEccCCCcc-cceEEEcc---cc----cceeEEEEecCCCcEEEEEE--eC----CCcEEEEE
Q 001362          407 DGSLLGVAY-SKHIVQLYAYHGGSDA-RQQLEIDA---HV----GNVNDLAFSAPCKQISVITC--GD----DKTIKVWD  471 (1092)
Q Consensus       407 dg~~las~~-~d~~i~iwd~~~~~~~-~~~~~~~~---h~----~~v~~~~~s~d~~~l~l~s~--~~----d~~i~vwd  471 (1092)
                      +.++|+..+ .++.|+|.|+.+.... +..+.+..   +.    ..-..+...|+|+  +++|+  +.    -|-+.+.|
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~--imIS~lGd~~G~g~Ggf~llD  163 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR--IMISALGDADGNGPGGFVLLD  163 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS----EEEEEEEETTS-S--EEEEE-
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc--EEEEeccCCCCCCCCcEEEEc
Confidence            467888876 6678999999854321 11222221   11    1223344457888  56654  22    24578888


Q ss_pred             CCCCceeEEEecCCc-C--eEEEeecccCCccEEEEEe--------------------cCCeEEEEEcCCCCceEEecCC
Q 001362          472 AVTGSRTYSFEGHGA-P--VYSLCPHAKENIHFIFSIS--------------------VDGKIKAWLYDSLGARVDYDAP  528 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~-~--v~~~~~~~~~~~~~l~s~~--------------------~dg~i~vwd~~~~~~~~~~~~~  528 (1092)
                      -++-+.......... .  -..+-+.+  ..+.++|..                    ...++++||+.+.+.++++...
T Consensus       164 ~~tf~v~g~We~~~~~~~~gYDfw~qp--r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg  241 (461)
T PF05694_consen  164 GETFEVKGRWEKDRGPQPFGYDFWYQP--RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG  241 (461)
T ss_dssp             TTT--EEEE--SB-TT------EEEET--TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred             CccccccceeccCCCCCCCCCCeEEcC--CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence            777777766654222 1  22333333  334566542                    2357999999999988887765


Q ss_pred             CC--ceEEEEEcc--CCCEEEEEecCCCCceeEEEEeC-CCCeE----EEEEeecc-----c---------cCCceEEEE
Q 001362          529 GL--GCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNE-SEGAI----KRTYQGLQ-----L---------QHNSVSVVH  585 (1092)
Q Consensus       529 ~~--~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iwd~-~~~~~----~~~~~~~~-----~---------~~~~v~~~~  585 (1092)
                      ..  -...+.|..  +..+-+++..   -...|..|-. ..++-    +..+....     .         -..-++.+.
T Consensus       242 ~~g~~pLEvRflH~P~~~~gFvg~a---Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~  318 (461)
T PF05694_consen  242 EEGQMPLEVRFLHDPDANYGFVGCA---LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL  318 (461)
T ss_dssp             TTEEEEEEEEE-SSTT--EEEEEEE-----EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE
T ss_pred             CCCCceEEEEecCCCCccceEEEEe---ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE
Confidence            43  344566644  4554444332   1334555543 33332    11111110     0         013478899


Q ss_pred             EcCCCCEEEEEe-CCCcEEEEECCCC---ceEEEEeCCCCC--------------CCCceEEEccCCCEEEEEe
Q 001362          586 FDTAKDQILAAG-DDHVIKIWDMNKV---QLLTTIDAGGGL--------------PENPRICFNKNGTLLAVIA  641 (1092)
Q Consensus       586 ~~p~~~~l~~~s-~dg~i~iwd~~~~---~~~~~~~~~~~~--------------~~v~~v~~s~~~~~l~~~~  641 (1092)
                      +|.|.++|+... .+|.|+-||+.+.   ++...+...+..              .....+..|-||++|.+.+
T Consensus       319 iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  319 ISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             E-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            999999998765 7899999999863   334333322110              1124566777777776654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.70  E-value=14  Score=38.38  Aligned_cols=214  Identities=12%  Similarity=0.130  Sum_probs=123.3

Q ss_pred             ceeEEEEecCCCcEEEEEEeCCCcEEEEECC------CC-ceeEEEec-----CCcCeEEEeecccC------C----cc
Q 001362          443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TG-SRTYSFEG-----HGAPVYSLCPHAKE------N----IH  500 (1092)
Q Consensus       443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~------~----~~  500 (1092)
                      .-+.++|+|.+.  +-++...-+...+||..      .. ..+-++..     .....+.+.|+...      +    ..
T Consensus        24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS  101 (336)
T ss_pred             ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence            457899999887  67777778889999986      12 22333331     12345556554321      1    12


Q ss_pred             EEEEEecCCeEEEEEcCCCCc-----eEEecCC--CCceEEEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeEE--E
Q 001362          501 FIFSISVDGKIKAWLYDSLGA-----RVDYDAP--GLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIK--R  569 (1092)
Q Consensus       501 ~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~--~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iwd~~~~~~~--~  569 (1092)
                      .++.+++||+|.-|...-...     ...+...  ..-...+++..  .+.+|+.+-.   ..++|.++|-.-....  .
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g  178 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG  178 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence            478889999999997532222     1222211  22344555553  3566766543   2566888875432211  0


Q ss_pred             EEeeccc--cCCc-----------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc----
Q 001362          570 TYQGLQL--QHNS-----------VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK----  632 (1092)
Q Consensus       570 ~~~~~~~--~~~~-----------v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~----  632 (1092)
                      .+.....  .-.+           |+...-.+++..=+.|..-|.|-+||. .|..++.+...+....-+.|+..|    
T Consensus       179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG  257 (336)
T ss_pred             CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence            0111000  0000           111111222222333445578999997 578888887666555667777765    


Q ss_pred             --CCCEEEEEeCCCeEEEEECCCCceeeeccc
Q 001362          633 --NGTLLAVIANENRIKILETPESNSVDAAGV  662 (1092)
Q Consensus       633 --~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  662 (1092)
                        .+.+|+---.||+|..||..+++.+..+..
T Consensus       258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~  289 (336)
T TIGR03118       258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD  289 (336)
T ss_pred             CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence              467777777799999999998887766664

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PHA02790 Kelch-like protein; Provisional

Probab=92.55  E-value=5.2  Score=46.45  Aligned_cols=184  Identities=11%  Similarity=-0.007  Sum_probs=93.8

Q ss_pred             CCCEEEEEe-C-----CeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEEcCCce--eeE
Q 001362          813 NDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSE--VIS  880 (1092)
Q Consensus       813 dg~~l~~~s-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~--~~~  880 (1092)
                      ++.++++|+ +     ..+..||..+.+-..  .+.........++  - ++.+.+.|+.++  .+..||..+++  .+.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence            455555554 2     246778877654322  2222222222222  3 677888888643  67888876543  222


Q ss_pred             eeccccCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCC
Q 001362          881 KLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET  957 (1092)
Q Consensus       881 ~l~~h~~~V~~l~~spdg~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~  957 (1092)
                      .+.........+  .-+|+..+.||.++   .+..||..+++......+..+.        -...+..-+|++.+.|  |
T Consensus       348 ~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r--------~~~~~~~~~~~IYv~G--G  415 (480)
T PHA02790        348 SLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH--------YKSCALVFGRRLFLVG--R  415 (480)
T ss_pred             CCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc--------ccceEEEECCEEEEEC--C
Confidence            232111111222  23688888888654   4678888776533322221111        1122334566666665  4


Q ss_pred             cEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCce
Q 001362          958 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 1012 (1092)
Q Consensus       958 ~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~ 1012 (1092)
                      .+.+||..+.+-...-...+...-.++ ..-+|+..+.||.+     .++..||..+++.
T Consensus       416 ~~e~ydp~~~~W~~~~~m~~~r~~~~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W  474 (480)
T PHA02790        416 NAEFYCESSNTWTLIDDPIYPRDNPEL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW  474 (480)
T ss_pred             ceEEecCCCCcEeEcCCCCCCccccEE-EEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence            577888876654322111111111122 23477888888764     3466777666544

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.37  E-value=8.5  Score=37.96  Aligned_cols=113  Identities=12%  Similarity=0.165  Sum_probs=69.1

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcC--CceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC------cEEEE---E
Q 001362          804 AVPCFALSKNDAYLFSASGGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS------TILIY---N  872 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg------~v~iw---d  872 (1092)
                      +...++-+..+.++++++.+.|.+|++.  ..+...+|..- +.|..++++. .|++|+|--.+.      .+|+|   +
T Consensus        19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr   96 (215)
T PF14761_consen   19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR   96 (215)
T ss_pred             CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence            3445555554555565678889999988  44556666643 7899999999 899999864332      45664   3


Q ss_pred             cC--Ccee-eEeeccc---------------------cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001362          873 AR--SSEV-ISKLEGH---------------------SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  919 (1092)
Q Consensus       873 ~~--~~~~-~~~l~~h---------------------~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~  919 (1092)
                      ..  ..+. ..++.||                     +.++.+++-.|-..-|+.|+ ++.+.+|.+....
T Consensus        97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~  166 (215)
T PF14761_consen   97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT  166 (215)
T ss_pred             hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence            22  1111 1122232                     24566777777544444444 4569999887643

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.33  E-value=14  Score=39.32  Aligned_cols=170  Identities=10%  Similarity=0.062  Sum_probs=94.3

Q ss_pred             eEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCC----CEEEEEe-CCCcEEEEEcCCceeeEeeccc-------
Q 001362          824 VISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAIGM-DDSTILIYNARSSEVISKLEGH-------  885 (1092)
Q Consensus       824 ~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~----~~lasg~-~dg~v~iwd~~~~~~~~~l~~h-------  885 (1092)
                      +|.+||+.+.+.++++.-+      ......+.+...++    .++..+. ..+-+.|+|+.+++..+.+..+       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            5889999999988876432      34567777765222    2444333 3358999999998754444322       


Q ss_pred             ------------cCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCceeee-----e----eeecCCCCcCCCCCceE
Q 001362          886 ------------SKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGWGIQTC-----R----SLQTPDGVMTLAPSETH  941 (1092)
Q Consensus       886 ------------~~~V~~l~~sp---dg~~l~s~s~Dg~i~iwd~~~~~~~~~-----~----~~~~~~~~~~~~~~v~~  941 (1092)
                                  .+.+..++.+|   |+++|....-.+ -++|.+.+......     .    .++.. +...  .....
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g  190 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKG--SQSDG  190 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----SECE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccC--CCCce
Confidence                        13366667765   666776665444 34555443111110     0    00110 0000  13567


Q ss_pred             EEEecCCCEEEE-EeCCcEEEEEcCCce---eeeeecc-CC-CCCEEEEEEec--CCCEEEEEE
Q 001362          942 IQFHKDQTRFLL-VHETHLAIYEAEELT---CLKQWFP-IS-SVPISQATFSC--DCRMVFTSF  997 (1092)
Q Consensus       942 l~~s~dg~~la~-~~d~~i~lwd~~~~~---~~~~~~~-~h-~~~v~~l~fs~--dg~~l~t~~  997 (1092)
                      ++++++|.+..+ ...+.|..|+..+.-   ....+.. .. -..+..+.+.+  +|.+.+.+.
T Consensus       191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred             EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence            899999998888 578899999987521   1111121 12 35678888888  777666553

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.29  E-value=21  Score=39.98  Aligned_cols=201  Identities=11%  Similarity=0.005  Sum_probs=105.1

Q ss_pred             EecCCCEEEEEeCCeEEEEEcCCceeeEEecCCC--CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecccc-
Q 001362          810 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-  886 (1092)
Q Consensus       810 ~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-  886 (1092)
                      ...|++.++...+|.+.-.|..+++.+.......  ..+..-.+.. +|+ ++.++.+|.++.+|..+|+.+....... 
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~  142 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS  142 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence            4446666666667888888888887664433221  2333333333 565 6778889999999998999888777555 


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe--CCcEEEEEc
Q 001362          887 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEA  964 (1092)
Q Consensus       887 ~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--d~~i~lwd~  964 (1092)
                      -.+..-..-.++..++ .+.++.+.-.+-.+++..-..........     .+..-....++...+...  ++.+.-.|.
T Consensus       143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~vy~~~~~~~~~~~a~~~  216 (370)
T COG1520         143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAPLSL-----SIYGSPAIASGTVYVGSDGYDGILYALNA  216 (370)
T ss_pred             eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCcccc-----ccccCceeecceEEEecCCCcceEEEEEc
Confidence            1122222222332222 23566666666665543221111110000     011111133444444433  445666677


Q ss_pred             CCceeeeeeccCCCCCEE---EEEEec-----CCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001362          965 EELTCLKQWFPISSVPIS---QATFSC-----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       965 ~~~~~~~~~~~~h~~~v~---~l~fs~-----dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      .+|.........+...-+   ......     .+.-+..++.++.+.-.+..+|+.+.++..
T Consensus       217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            777666542211111100   011111     112235666778888889999999888774

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.11  E-value=4.5  Score=45.11  Aligned_cols=103  Identities=9%  Similarity=0.099  Sum_probs=56.6

Q ss_pred             CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEEcCCC--ceeeeeeeecCCCCcCCCCCceEEEEecCCCEEE
Q 001362          887 KRVTGLVFSDALNILVSSG-----------GDA-QIFVWDVDGW--GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL  952 (1092)
Q Consensus       887 ~~V~~l~~spdg~~l~s~s-----------~Dg-~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la  952 (1092)
                      .....|+|.++|+++++-.           ..+ .|.+++-..+  .......+.....      ....+++.++| +++
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~------~p~Gi~~~~~G-lyV   86 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELS------MVTGLAVAVGG-VYV   86 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCC------CccceeEecCC-EEE
Confidence            3466789999998887653           223 5767665432  2222222221111      35789999999 555


Q ss_pred             EEeCCcEEEE-EcCC-------ceeeeeeccC----CCCCEEEEEEecCCCEEEEEE
Q 001362          953 LVHETHLAIY-EAEE-------LTCLKQWFPI----SSVPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       953 ~~~d~~i~lw-d~~~-------~~~~~~~~~~----h~~~v~~l~fs~dg~~l~t~~  997 (1092)
                      +. ...|..| |...       .+.+..-+..    +......++|.|||.+.++.+
T Consensus        87 ~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        87 AT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             eC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            43 3445544 4431       1112121211    234477899999998777655

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.89  E-value=12  Score=36.26  Aligned_cols=175  Identities=15%  Similarity=0.076  Sum_probs=94.6

Q ss_pred             EEEEEeCC--CcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE
Q 001362          457 SVITCGDD--KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR  534 (1092)
Q Consensus       457 ~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~  534 (1092)
                      ++.+.+.-  ..|++||+.+|+.+.+-.-....+..=-....+| .+..-.=.+|.-..+|.++.++.-.+...+.. . 
T Consensus        58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG-W-  134 (262)
T COG3823          58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGEG-W-  134 (262)
T ss_pred             EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCcc-e-
Confidence            56666543  3699999999998866543211111111100111 23333446777788888887776655444322 2 


Q ss_pred             EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc--cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001362          535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL  612 (1092)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~  612 (1092)
                       ....|++.|+.+    ++..+++.-|+.+-....+......  ....++-+.|- +|...+-.-.+..|...+.++|+.
T Consensus       135 -gLt~d~~~Lims----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV  208 (262)
T COG3823         135 -GLTSDDKNLIMS----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV  208 (262)
T ss_pred             -eeecCCcceEee----CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence             234566666665    3466788888877655444332220  01222333332 344444344555666677788877


Q ss_pred             EEEEeCCC----------CCCCCceEEEccCCCEEEEE
Q 001362          613 LTTIDAGG----------GLPENPRICFNKNGTLLAVI  640 (1092)
Q Consensus       613 ~~~~~~~~----------~~~~v~~v~~s~~~~~l~~~  640 (1092)
                      +..+...+          +....+.+++.|++..+...
T Consensus       209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT  246 (262)
T COG3823         209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT  246 (262)
T ss_pred             EEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence            76665321          12235678998877444433

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.59  E-value=5.7  Score=46.93  Aligned_cols=176  Identities=13%  Similarity=0.087  Sum_probs=94.0

Q ss_pred             CCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEE
Q 001362          814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV  893 (1092)
Q Consensus       814 g~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~  893 (1092)
                      +.+++++..+.|.||+........    ...++..+...|   ..  +...|+.+..|.  .        .|+-.-..+.
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p--~--------PHtIN~i~v~  109 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP--F--------PHTINFIKVG  109 (717)
T ss_pred             CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC--C--------CceeeEEEec
Confidence            788888999999999986432211    111112222222   11  122344333332  1        1221111122


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCc---------ee--eeeeeecCCCCcCCCCCceEEEEe--cCCCEEEEEeCC-cE
Q 001362          894 FSDALNILVSSGGDAQIFVWDVDGWG---------IQ--TCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHET-HL  959 (1092)
Q Consensus       894 ~spdg~~l~s~s~Dg~i~iwd~~~~~---------~~--~~~~~~~~~~~~~~~~~v~~l~~s--~dg~~la~~~d~-~i  959 (1092)
                      .--+...|+.+.+||.|.+|.++.--         ..  .......+.-........+++++.  ...++||+++++ .|
T Consensus       110 ~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~V  189 (717)
T PF08728_consen  110 DLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEV  189 (717)
T ss_pred             ccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceE
Confidence            22345678888888888888653200         00  000000011111122468899998  888999997664 46


Q ss_pred             EEEEcCC--ceeeeeeccCCCCCEEEEEEecCC---C---EEEEEECCCcEEEEEcC
Q 001362          960 AIYEAEE--LTCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       960 ~lwd~~~--~~~~~~~~~~h~~~v~~l~fs~dg---~---~l~t~~~Dg~i~vwd~~ 1008 (1092)
                      .||-...  .+....-...|...|-++.|-++.   .   +|++++-.|.+.+|++.
T Consensus       190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            6654433  221111112356778899997754   2   78888899999998873

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.50  E-value=8.1  Score=37.43  Aligned_cols=100  Identities=16%  Similarity=0.119  Sum_probs=61.1

Q ss_pred             CCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeE--EEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccC
Q 001362          813 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTAT--SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK  887 (1092)
Q Consensus       813 dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~--~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~  887 (1092)
                      +|.++.+.+   ...|++||+.+++.+..-.-....+.  .+.-.  ++.+.+-...+|.-..||..+.+++..+. -.+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G  131 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG  131 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence            556666665   35699999999988765432221111  11111  33445556778999999999988877765 333


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001362          888 RVTGLVFSDALNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       888 ~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      .=+.++  .|++-|+.++...+++.-|.++
T Consensus       132 eGWgLt--~d~~~LimsdGsatL~frdP~t  159 (262)
T COG3823         132 EGWGLT--SDDKNLIMSDGSATLQFRDPKT  159 (262)
T ss_pred             cceeee--cCCcceEeeCCceEEEecCHHH
Confidence            344444  3666677665555666666554

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.06  E-value=30  Score=38.70  Aligned_cols=150  Identities=8%  Similarity=0.024  Sum_probs=85.8

Q ss_pred             eEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce-eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee---
Q 001362          846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ---  921 (1092)
Q Consensus       846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~---  921 (1092)
                      ...+..++ |+.+++++..-..++-||--... .... ..-...++++.|.+++.+++.+ .+|.+ +|....+..-   
T Consensus       241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~-~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHN-RASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEec-CCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence            34456677 77777766544333334332110 1111 2234568999999998887755 56654 4444443211   


Q ss_pred             eeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeec--cCCCCCEEEEEEecCCCEEEEEECC
Q 001362          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFVD  999 (1092)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~t~~~D  999 (1092)
                      ....+......    ..+.++.|.+++..++++..|.+.... ..|+.-....  ..-......+.|.++++.+++| .+
T Consensus       317 ~f~~~~~~~~~----~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~  390 (398)
T PLN00033        317 DFEEADIKSRG----FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-ND  390 (398)
T ss_pred             ceeecccCCCC----cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CC
Confidence            11111111111    147889999999999999888776654 3444332222  2224578899998888777755 67


Q ss_pred             CcEEEE
Q 001362         1000 GTLSIH 1005 (1092)
Q Consensus      1000 g~i~vw 1005 (1092)
                      |.|.-|
T Consensus       391 G~il~~  396 (398)
T PLN00033        391 GVLLRY  396 (398)
T ss_pred             cEEEEe
Confidence            877655

>PHA02790 Kelch-like protein; Provisional

Probab=91.01  E-value=9.7  Score=44.26  Aligned_cols=149  Identities=9%  Similarity=-0.016  Sum_probs=72.7

Q ss_pred             CccEEEEEecCC--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001362          498 NIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1092)
Q Consensus       498 ~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1092)
                      ++.+.+.|+.++  .+..||..+.+-...-..........+..-+|+..+.||.++. ...+..||+.+.+-...-.-..
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~  396 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYY  396 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCC
Confidence            556777777543  4677776543221111111111122223346776677665432 3567889988776543211111


Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-----CeEEEEE
Q 001362          576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILE  650 (1092)
Q Consensus       576 ~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~  650 (1092)
                       .......+  .-++...+.|   |.+.+||..+.+....-.....  ....-+..-+++..++|+.+     ..+..||
T Consensus       397 -~r~~~~~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~--r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd  468 (480)
T PHA02790        397 -PHYKSCAL--VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYP--RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYN  468 (480)
T ss_pred             -ccccceEE--EECCEEEEEC---CceEEecCCCCcEeEcCCCCCC--ccccEEEEECCEEEEECCcCCCcccceEEEEE
Confidence             01111122  2244444445   3577899888766543322211  11112222367777887754     3566777


Q ss_pred             CCCCc
Q 001362          651 TPESN  655 (1092)
Q Consensus       651 ~~~~~  655 (1092)
                      ..+++
T Consensus       469 ~~~~~  473 (480)
T PHA02790        469 NRTYS  473 (480)
T ss_pred             CCCCe
Confidence            66553

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.01  E-value=22  Score=37.06  Aligned_cols=205  Identities=14%  Similarity=0.124  Sum_probs=116.0

Q ss_pred             eeEEEEecCCCEEEEEeC-CeEEEEEcC-------CceeeEEecC-----CCCCeEEEEEcCCCCCE------------E
Q 001362          805 VPCFALSKNDAYLFSASG-GVISLYIVM-------TFKTILTIMP-----PSPTATSLAFNPHDNNV------------I  859 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~sd-g~i~iwd~~-------~~~~~~~~~~-----~~~~i~~l~~s~~d~~~------------l  859 (1092)
                      -..++++|.+.+.++... +...+||..       ...++.++..     .....+.+.|+. ...+            +
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF  103 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence            457999999877766654 889999986       1123334432     123567777764 2223            4


Q ss_pred             EEEeCCCcEEEEEcCCcee-----eEeec-cccCCeE-EEEEcCC--CCEE-EEEeCCCcEEEEEcCCCceeeeeeee--
Q 001362          860 AIGMDDSTILIYNARSSEV-----ISKLE-GHSKRVT-GLVFSDA--LNIL-VSSGGDAQIFVWDVDGWGIQTCRSLQ--  927 (1092)
Q Consensus       860 asg~~dg~v~iwd~~~~~~-----~~~l~-~h~~~V~-~l~~spd--g~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~--  927 (1092)
                      +.+++||+|.=|...-+..     ...+. +-.+.|+ .+++...  +.+| ++--..++|.|+|-.-......-...  
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            5678999999998533221     11222 1123343 4666533  3444 44456788999876542211000000  


Q ss_pred             -cCCCCcCCCCCceEEEEecCCCEEEE-E-------------eCCcEEEEEcCCceeeeeec-cCCCCCEEEEEEec---
Q 001362          928 -TPDGVMTLAPSETHIQFHKDQTRFLL-V-------------HETHLAIYEAEELTCLKQWF-PISSVPISQATFSC---  988 (1092)
Q Consensus       928 -~~~~~~~~~~~v~~l~~s~dg~~la~-~-------------~d~~i~lwd~~~~~~~~~~~-~~h~~~v~~l~fs~---  988 (1092)
                       .+.+..+     ..+. .-.+++.++ +             .-|.|-+||.. |..++++. .+.-...+.|+..|   
T Consensus       184 ~iPagyAP-----FnIq-nig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~F  256 (336)
T TIGR03118       184 ALPAGYAP-----FNVQ-NLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESF  256 (336)
T ss_pred             CCCCCCCC-----cceE-EECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhh
Confidence             0111100     0110 112333333 2             23579999985 66666543 23345566777755   


Q ss_pred             ---CCCEEEEEECCCcEEEEEcCCCceEEeec
Q 001362          989 ---DCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       989 ---dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                         .|.+|+---.||+|-.+|..+|+.+..+.
T Consensus       257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~  288 (336)
T TIGR03118       257 GSLSGALLVGNFGDGTINAYDPQSGAQLGQLL  288 (336)
T ss_pred             CCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence               57788877789999999999999887776

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=90.97  E-value=40  Score=43.57  Aligned_cols=150  Identities=15%  Similarity=0.192  Sum_probs=87.0

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      .|-..++.|.-+|+|.++ =.  .|+.++.||..++.         |...          -..-...++.++-.-||+..
T Consensus       360 aH~A~LTgv~~~~~ge~l-Rl--Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lY  417 (1774)
T PF11725_consen  360 AHIAHLTGVHTDPDGEQL-RL--HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLY  417 (1774)
T ss_pred             HHHHHhhccccCCCCCeE-Ee--ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceE
Confidence            466678888888888753 22  56778888876542         3210          01123455566666677766


Q ss_pred             EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC------ce--eEEEec
Q 001362          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------SR--TYSFEG  483 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~------~~--~~~~~~  483 (1092)
                      | =+.+   .+-|+..+..-.      ..-..+.+...+++|.- .+.++-....+.+|++...      ++  .-.+.+
T Consensus       418 A-k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d  486 (1774)
T PF11725_consen  418 A-KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD  486 (1774)
T ss_pred             e-cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccC
Confidence            6 2222   234555543111      12235777888999982 3566666667799998754      11  122233


Q ss_pred             CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC
Q 001362          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS  518 (1092)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  518 (1092)
                      -.....++.++  +  ..|+.+..+|.+..=++..
T Consensus       487 G~a~A~~VgLs--~--drLFvADseGkLYsa~l~~  517 (1774)
T PF11725_consen  487 GKAQAQSVGLS--N--DRLFVADSEGKLYSADLPA  517 (1774)
T ss_pred             Cchhhhheeec--C--CeEEEEeCCCCEEeccccc
Confidence            33345556663  2  3688889999888776654

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=90.40  E-value=31  Score=37.72  Aligned_cols=71  Identities=8%  Similarity=-0.060  Sum_probs=35.9

Q ss_pred             CccEEEEEecC-----CeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001362          498 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1092)
Q Consensus       498 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1092)
                      ++.+.+.|+..     ..+..||+.+.+=...-.... ......+...+++..+.++.++.....+..||+.+.+-.
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence            44566666642     346777766543222111111 122233344566777776654322234678898876643

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.35  E-value=17  Score=45.44  Aligned_cols=154  Identities=18%  Similarity=0.172  Sum_probs=96.5

Q ss_pred             eCCCcEEEEEcCCceeeEeeccccCCeEEEEE--------cCCCCEEEEEeCCCcEEEEEcCCCceeeeee-eecCCCCc
Q 001362          863 MDDSTILIYNARSSEVISKLEGHSKRVTGLVF--------SDALNILVSSGGDAQIFVWDVDGWGIQTCRS-LQTPDGVM  933 (1092)
Q Consensus       863 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--------spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~  933 (1092)
                      +-|+.+.+|+.+++.....+.+-+..|..+..        -|.=++|...+.--.|.|+-+.-.+...... ....-...
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            35788999999998878888877777777654        2333555555555667777654433221110 00000000


Q ss_pred             CCCCCceEEEEecCCCEEEEEeCCcEEE--EEcCCc---e-ee----------------eeeccCCCCCEEEEEEecCCC
Q 001362          934 TLAPSETHIQFHKDQTRFLLVHETHLAI--YEAEEL---T-CL----------------KQWFPISSVPISQATFSCDCR  991 (1092)
Q Consensus       934 ~~~~~v~~l~~s~dg~~la~~~d~~i~l--wd~~~~---~-~~----------------~~~~~~h~~~v~~l~fs~dg~  991 (1092)
                      ..+..|.++....+|+.+.+|.||.|+=  |....|   + |.                ..+...+..+|..++....-.
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~  255 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN  255 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence            1113588899899999999999985442  222221   1 10                111124577999999988888


Q ss_pred             EEEEEECCCcEEEEEcCC-CceEEee
Q 001362          992 MVFTSFVDGTLSIHEASN-LEVQCRI 1016 (1092)
Q Consensus       992 ~l~t~~~Dg~i~vwd~~~-~~~~~~~ 1016 (1092)
                      .|.+-+..|+|++|++.. |....++
T Consensus       256 IlY~lsek~~v~~Y~i~~~G~~~~r~  281 (1311)
T KOG1900|consen  256 ILYVLSEKGTVSAYDIGGNGLGGPRF  281 (1311)
T ss_pred             eeeeeccCceEEEEEccCCCccceee
Confidence            899999999999999987 5444333

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.26  E-value=37  Score=38.48  Aligned_cols=66  Identities=14%  Similarity=0.197  Sum_probs=41.5

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001362          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      +...-+..+.|+|.|||+ +|++--..|.|++++..++.......+            .........+....|+|+|+-
T Consensus        25 va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        25 LLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             EECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence            344445889999999997 677654469999998665543211111            000011136778899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.21  E-value=13  Score=33.62  Aligned_cols=120  Identities=12%  Similarity=0.093  Sum_probs=68.8

Q ss_pred             EEeecCCCceEEEEEcCCCcEEEEecCCCCeeEE---eeeeeeecccccceeeEeeecCCCCcEEEEEECC-----CCCE
Q 001362          339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI---RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGSL  410 (1092)
Q Consensus       339 ~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~---~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-----dg~~  410 (1092)
                      .-.|..... -|++++..|.|.|.+.........   ..++               +-.-...|++++-.+     +...
T Consensus         3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~---------------~LNin~~italaaG~l~~~~~~D~   66 (136)
T PF14781_consen    3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDIS---------------FLNINQEITALAAGRLKPDDGRDC   66 (136)
T ss_pred             EEEeCCCce-eEEEEecCCEEEEECCCccccccccccCcee---------------EEECCCceEEEEEEecCCCCCcCE
Confidence            334555554 467777889999998765432211   0111               112345677776443     3556


Q ss_pred             EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCC--cEEEEEEeCCCcEEEEECCCCceeEE
Q 001362          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK--QISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~--~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      |+.|+.. .+..||++....+.    .+.-...|.++.+-.-+.  . -++..+.+..|.-+|.+..+...+
T Consensus        67 LliGt~t-~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~-~l~ivGGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   67 LLIGTQT-SLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPS-PLVIVGGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             EEEeccc-eEEEEEcccCchhh----hhhCccceeEEEEEecCCCCC-cEEEECceEEEEEeCCCCcEEEEE
Confidence            7777655 59999999876554    334456677777632111  1 234444477888888555444443

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.19  E-value=28  Score=37.09  Aligned_cols=167  Identities=11%  Similarity=0.071  Sum_probs=89.1

Q ss_pred             cEEEEECCCCceeEEEecC------CcCeEEEeecccCC----ccEEEEEecCCeEEEEEcCCCCceEEecCCC------
Q 001362          466 TIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAPG------  529 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------  529 (1092)
                      .|.+||+.+++.++++.-.      ...++.+.+...+.    +...++-+..+-|.|+|+.+++.........      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            6888999999988877532      34566777655332    2334444555689999998876544332211      


Q ss_pred             -------------CceEEEEEcc---CCCEEEEEecCCCCceeEEEEeCCC-----Ce---------EEEEEeeccccCC
Q 001362          530 -------------LGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESE-----GA---------IKRTYQGLQLQHN  579 (1092)
Q Consensus       530 -------------~~i~~~~~s~---dg~~l~~~~~~~~~~~~i~iwd~~~-----~~---------~~~~~~~~~~~~~  579 (1092)
                                   ..+..++.+|   +|+.|+.....+     -.+|.+.+     ..         .+..+ +..  ..
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~  186 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS  186 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence                         1245556554   666666554321     11222111     00         01111 221  13


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceEEEEeC-CCCCCCCceEEEcc--CCCEEEEE
Q 001362          580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTIDA-GGGLPENPRICFNK--NGTLLAVI  640 (1092)
Q Consensus       580 ~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~-~~~~~~v~~v~~s~--~~~~l~~~  640 (1092)
                      ....++++++|..+++--..+.|..|+..+.   +....+.. ......+..+.+.+  +|.+.+..
T Consensus       187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            5567888999988888889999999998761   12222222 22133456777777  55444433

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.18  E-value=12  Score=43.64  Aligned_cols=187  Identities=10%  Similarity=0.106  Sum_probs=95.2

Q ss_pred             CCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCceEEEEEccC
Q 001362          464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSAN  540 (1092)
Q Consensus       464 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~d  540 (1092)
                      --.|+|++ .+|+.+..+.-..+.+..+.|+   +.+.|++...+|++++|++-......   ........|..+.+..+
T Consensus        63 ~~~I~If~-~sG~lL~~~~w~~~~lI~mgWs---~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~  138 (829)
T KOG2280|consen   63 RPYIRIFN-ISGQLLGRILWKHGELIGMGWS---DDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN  138 (829)
T ss_pred             ceeEEEEe-ccccchHHHHhcCCCeeeeccc---CCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecC
Confidence            34588888 5677776654444467777774   33578999999999999876433222   11222334555556566


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE-EcCCCCEEEEEeCCCc--EEEEECCCCceEEEEe
Q 001362          541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH-FDTAKDQILAAGDDHV--IKIWDMNKVQLLTTID  617 (1092)
Q Consensus       541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~p~~~~l~~~s~dg~--i~iwd~~~~~~~~~~~  617 (1092)
                      |-.+.+.+      +.+.+-+-......+++.......-+-.+-. +.|.........-+-.  ..++..+... .+...
T Consensus       139 GVavlt~~------g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~-~q~~~  211 (829)
T KOG2280|consen  139 GVAVLTVS------GQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR-VQLHA  211 (829)
T ss_pred             ceEEEecC------CcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccc-ccccc
Confidence            65555442      2344433222222233322110001111111 1221111111111100  0111111111 11111


Q ss_pred             CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001362          618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                      .......+..+..||+.++|+.-..+|.|.+-+.+..+.+..+.
T Consensus       212 ~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  212 LSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             cCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            11122457789999999999999999999999888776665554

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.17  E-value=36  Score=38.11  Aligned_cols=150  Identities=9%  Similarity=0.005  Sum_probs=83.1

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCce
Q 001362          889 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT  968 (1092)
Q Consensus       889 V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~  968 (1092)
                      ...+..++||.+++.+..-..++-||-....   ...+.....     ..+.++.|.+++.+++++..|.+.. ....++
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~~~~~-----~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~  311 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHNRASA-----RRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL  311 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEecCCCc-----cceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence            4456677888777765443333334432210   112222211     2588999999999999887777544 333443


Q ss_pred             -----eeeeeccC-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCC
Q 001362          969 -----CLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1042 (1092)
Q Consensus       969 -----~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~ 1042 (1092)
                           ........ -...+..+.|.+|+..+++| ..|.+... .+.|+.-........++.     .+|  .+.|.+  
T Consensus       312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~-----~ly--~v~f~~--  380 (398)
T PLN00033        312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAA-----NLY--SVKFFD--  380 (398)
T ss_pred             cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCc-----cee--EEEEcC--
Confidence                 12211111 12458899999888766654 67866654 455655444331122222     244  566664  


Q ss_pred             CCEEEEEeCCCcEEEE
Q 001362         1043 PTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus      1043 ~~~l~~~~~dg~v~~w 1058 (1092)
                      ++...+.+.+|.|.-|
T Consensus       381 ~~~g~~~G~~G~il~~  396 (398)
T PLN00033        381 DKKGFVLGNDGVLLRY  396 (398)
T ss_pred             CCceEEEeCCcEEEEe
Confidence            3556666688887655

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.11  E-value=36  Score=38.06  Aligned_cols=199  Identities=16%  Similarity=0.118  Sum_probs=104.4

Q ss_pred             EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc-CeE
Q 001362          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-PVY  489 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~  489 (1092)
                      +.++..+|.|.-.|.+++..+-..... +....+..-.+..+|+   ++.++.++.+...|..+|+.+........ .+.
T Consensus        71 v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~  146 (370)
T COG1520          71 VYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA  146 (370)
T ss_pred             EEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence            333456676777777776532111011 1112233333334776   77788899999999889999888766551 111


Q ss_pred             EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001362          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1092)
Q Consensus       490 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1092)
                      .-.+   .....+..++.+|.+...+..++..........   ..+..-....++. ++.+... . +..+.-.|..+|.
T Consensus       147 ~~~v---~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~-~-~~~~~a~~~~~G~  220 (370)
T COG1520         147 SPPV---VGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDG-Y-DGILYALNAEDGT  220 (370)
T ss_pred             cCcE---EcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCC-C-cceEEEEEccCCc
Confidence            1111   112244444467888877777777766543322   1111111122333 3333221 1 3357777888887


Q ss_pred             EEEEEeeccccC-CceEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001362          567 IKRTYQGLQLQH-NSVSVVHFDT-----AKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       567 ~~~~~~~~~~~~-~~v~~~~~~p-----~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  619 (1092)
                      ..-......... ..+.......     .+..++.++.++.+...|..+++.+......
T Consensus       221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            766543222000 0110000100     1223466777888999999999999888754

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.92  E-value=0.88  Score=31.53  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=26.6

Q ss_pred             CCceEEeecCCCc--eEEEEEcCCCcEEEEecCCC
Q 001362          335 SSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSG  367 (1092)
Q Consensus       335 ~~V~~v~~spdg~--~llasg~~d~~v~iwd~~~~  367 (1092)
                      +.|.++.|||+..  .||+..-.-|.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3689999997553  47888778899999999863

It contains a characteristic DLL sequence motif.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=89.59  E-value=63  Score=40.12  Aligned_cols=174  Identities=15%  Similarity=0.152  Sum_probs=103.2

Q ss_pred             CCCCeeEEEEe---c----CCCEEEEEeCCeEEEEEcCCc---------------eeeEEecC---CCCCeEEEEEcCCC
Q 001362          801 SQEAVPCFALS---K----NDAYLFSASGGVISLYIVMTF---------------KTILTIMP---PSPTATSLAFNPHD  855 (1092)
Q Consensus       801 ~~~~v~~~~~s---~----dg~~l~~~sdg~i~iwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~d  855 (1092)
                      ...+|..|+|+   .    ..++|++-....+.|+...-.               ..+..+..   ...+...++|+|.+
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence            45678888887   2    235788777788888772211               12223321   12355678888877


Q ss_pred             CCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001362          856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  935 (1092)
Q Consensus       856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  935 (1092)
                      ...+|+....|...||++..+...     +.. .          +-+.....|.| +.|...-                 
T Consensus       158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~~-~----------~~~~~~~~gsi-~~d~~e~-----------------  203 (765)
T PF10214_consen  158 QRQFAIVDEKGNWSVWDIKGRPKR-----KSS-N----------LRLSRNISGSI-IFDPEEL-----------------  203 (765)
T ss_pred             cceEEEEeccCcEEEEEecccccc-----CCc-c----------eeeccCCCccc-cCCCccc-----------------
Confidence            778888888888888888221100     001 1          11112222333 2222210                 


Q ss_pred             CCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeee-eeccCCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCC
Q 001362          936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       936 ~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~-~~~~~h~~~v~~l~fs~dg-~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
                       ..-..+.|.++-..|++.+...+.++|+.+..... .........|..+.-+++. .+++.- ....|...++...
T Consensus       204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~  278 (765)
T PF10214_consen  204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS  278 (765)
T ss_pred             -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence             12457889999899999888999999998776643 2233346788888888872 222222 2356888888773

These proteins are found in fungi.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=89.58  E-value=34  Score=38.35  Aligned_cols=39  Identities=10%  Similarity=0.044  Sum_probs=18.8

Q ss_pred             EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001362          602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      +.+||.++.+....-..+..  .....+..-+++++++|+.
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~  352 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGE  352 (376)
T ss_pred             hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCC
Confidence            45788877654322222211  1122233345667777765

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.54  E-value=13  Score=41.09  Aligned_cols=149  Identities=9%  Similarity=0.096  Sum_probs=92.1

Q ss_pred             EEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccC------CccEEEEEecCCeEEEEEcCCCC
Q 001362          447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYDSLG  520 (1092)
Q Consensus       447 ~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~s~~~dg~i~vwd~~~~~  520 (1092)
                      +-...+.+.+++..|+....++--|++.|+.+..+..|...|  +.+.|..      +.+.|+-.| +..|.-.|.+...
T Consensus       472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~g  548 (776)
T COG5167         472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARG  548 (776)
T ss_pred             ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeec-ccceEEecccccC
Confidence            334444444567778888889999999999999998887764  3343321      234455444 4444445655444


Q ss_pred             ceEEecCCCC-----ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE
Q 001362          521 ARVDYDAPGL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA  595 (1092)
Q Consensus       521 ~~~~~~~~~~-----~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  595 (1092)
                      ..........     ...+..- ...-++++++..++    |++||.-.......+++..   ..|..+..+.+|.++++
T Consensus       549 NKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGD----irLyDRig~rAKtalP~lG---~aIk~idvta~Gk~ila  620 (776)
T COG5167         549 NKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGD----IRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKHILA  620 (776)
T ss_pred             Cceeeeeehhcccccccccccc-ccCceEEEecCCCc----eeeehhhcchhhhcCcccc---cceeeeEeecCCcEEEE
Confidence            3222221111     1222222 23457888876443    9999976666666666665   78999999999999988


Q ss_pred             EeCCCcEEEEEC
Q 001362          596 AGDDHVIKIWDM  607 (1092)
Q Consensus       596 ~s~dg~i~iwd~  607 (1092)
                      .+. ..+.+-|+
T Consensus       621 TCk-~yllL~d~  631 (776)
T COG5167         621 TCK-NYLLLTDV  631 (776)
T ss_pred             eec-ceEEEEec
Confidence            775 34555554

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.54  E-value=3.4  Score=50.07  Aligned_cols=147  Identities=11%  Similarity=0.037  Sum_probs=90.3

Q ss_pred             ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-----EEEec----CC--cCeEEEeecccCCccEEEEEecCCeE
Q 001362          443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-----YSFEG----HG--APVYSLCPHAKENIHFIFSISVDGKI  511 (1092)
Q Consensus       443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-----~~~~~----~~--~~v~~~~~~~~~~~~~l~s~~~dg~i  511 (1092)
                      +|..+..++|+....++..+.+-.|..||+++-..-     .-+..    ..  ....++.|+|... ...+....|+.|
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence            566777778877545555566567889998753211     11111    11  2234455655432 245667788888


Q ss_pred             EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc-CCceEEEEEcCCC
Q 001362          512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAK  590 (1092)
Q Consensus       512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~  590 (1092)
                      ++..+........--.-....++++|+|.|+.++.+-.    .+++.-|.. +++....+.+.... ...|.+++|-...
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeec-ccceeecccCCCcCCCcceeEEEEecce
Confidence            88766543333332233456889999999999999864    556766654 34544555444322 3679999998877


Q ss_pred             CEEEE
Q 001362          591 DQILA  595 (1092)
Q Consensus       591 ~~l~~  595 (1092)
                      .++++
T Consensus       256 eflvv  260 (1405)
T KOG3630|consen  256 EFLVV  260 (1405)
T ss_pred             eEEEE
Confidence            77665

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.35  E-value=1.3  Score=30.68  Aligned_cols=32  Identities=25%  Similarity=0.308  Sum_probs=26.6

Q ss_pred             CcEEEEEECCC-C--CEEEEEeCCCEEEEEEccCC
Q 001362          397 VSVNRVVWSPD-G--SLLGVAYSKHIVQLYAYHGG  428 (1092)
Q Consensus       397 ~~V~~l~~spd-g--~~las~~~d~~i~iwd~~~~  428 (1092)
                      +.|.++.|||+ +  .+|+.+-..+.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            46899999984 4  58888888899999999863

It contains a characteristic DLL sequence motif.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.26  E-value=2.1  Score=46.12  Aligned_cols=122  Identities=11%  Similarity=0.153  Sum_probs=80.5

Q ss_pred             CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001362          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      +++|.++.||+|.+ ++|+--.+++|.+.+....+.......+               ....+..|....|+.+ .-+|.
T Consensus        66 ~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~---------------ck~k~~~IlGF~W~~s-~e~A~  128 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQE---------------CKTKNANILGFCWTSS-TEIAF  128 (657)
T ss_pred             CCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHH---------------hccCcceeEEEEEecC-eeEEE
Confidence            45999999999998 8999999999999998554433221110               1223456888899865 67777


Q ss_pred             EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001362          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      .+..| +.+|-+...+  +.....+.|...|....|.++..-.+|+|+-..+++.=+-+.++
T Consensus       129 i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  129 ITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             EecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            77777 7777765432  22224557888999999999988533333323444443443433

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=89.21  E-value=45  Score=37.90  Aligned_cols=72  Identities=14%  Similarity=0.146  Sum_probs=48.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001362          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  474 (1092)
                      ...+|.++.+...|. |-+|+.|| +..||..+++.++..  ......+|..+.-+-.|+   +..|+.+| |.+.+.+.
T Consensus       163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G  234 (671)
T COG3292         163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG  234 (671)
T ss_pred             cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence            346888999988885 45567788 788888887655421  112335777777777777   66677555 67777555

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.37  E-value=36  Score=37.15  Aligned_cols=151  Identities=11%  Similarity=0.110  Sum_probs=85.3

Q ss_pred             CCCCeeEEEEec-CCCEEEEEeCCe------EEEEEcCC--c--eee-----EEecCCCC--------CeEEEEEcCCCC
Q 001362          801 SQEAVPCFALSK-NDAYLFSASGGV------ISLYIVMT--F--KTI-----LTIMPPSP--------TATSLAFNPHDN  856 (1092)
Q Consensus       801 ~~~~v~~~~~s~-dg~~l~~~sdg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~i~~l~~s~~d~  856 (1092)
                      .-+.++.+.+.+ ++.+++...+|.      +..+++..  +  ..+     ..+....+        ..-++++.+ ++
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g   96 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG   96 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence            345678889985 555555554455      55444432  1  111     11222221        344788866 78


Q ss_pred             CEEEEEeCC------CcEEEEEcCCceeeEeec---------------cccCCeEEEEEcCCCCEEEEEeC-----CC--
Q 001362          857 NVIAIGMDD------STILIYNARSSEVISKLE---------------GHSKRVTGLVFSDALNILVSSGG-----DA--  908 (1092)
Q Consensus       857 ~~lasg~~d------g~v~iwd~~~~~~~~~l~---------------~h~~~V~~l~~spdg~~l~s~s~-----Dg--  908 (1092)
                      .++++.-.+      ..|+.++.. |+.+..+.               ..+....+|+++|||+.|.++.+     |+  
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~  175 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR  175 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence            888876666      788888876 65544331               13456889999999997766543     22  


Q ss_pred             c-------EEEEEcCCCc---eeeeeeeecCC-CCcCCCCCceEEEEecCCCEEEE
Q 001362          909 Q-------IFVWDVDGWG---IQTCRSLQTPD-GVMTLAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       909 ~-------i~iwd~~~~~---~~~~~~~~~~~-~~~~~~~~v~~l~~s~dg~~la~  953 (1092)
                      .       ++|+......   ........... ........+..+.+-+++++|+.
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            1       5665554321   11111222221 00001136889999999998887

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=88.35  E-value=51  Score=37.48  Aligned_cols=272  Identities=16%  Similarity=0.089  Sum_probs=133.7

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      .|.++.+.-.|.  +-.|+.|| +..+|..+|+.+....-                  ....+|.++.-+-.| .|.+|+
T Consensus       166 ~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s~------------------~~dk~I~al~~d~qg-~LWVGT  223 (671)
T COG3292         166 PVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLASP------------------PLDKAINALIADVQG-RLWVGT  223 (671)
T ss_pred             cceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCCC------------------cchhhHHHHHHHhcC-cEEEEe
Confidence            788999999997  34556655 67778777776653110                  011355555555444 466777


Q ss_pred             CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCC--cCeEEEe
Q 001362          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHG--APVYSLC  492 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~--~~v~~~~  492 (1092)
                      .+| |.+.+.++.+....  -..-..+.|..+.=..+|.   +-.|+..|..+. ....+...... +-|.  ..|+++.
T Consensus       224 dqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~  296 (671)
T COG3292         224 DQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLW  296 (671)
T ss_pred             ccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCcccccccee
Confidence            777 78877766321110  0011233444444444444   444554543322 32333222222 1121  2233333


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001362          493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRT  570 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  570 (1092)
                      .  +.+| -|-+++.+|.+++-+-+-..........+..+...+.+|  .+..+-....    .+.+.+-+..+|..++.
T Consensus       297 ~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns----~g~L~van~stG~~v~s  369 (671)
T COG3292         297 L--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS----IGELMVANGSTGELVRS  369 (671)
T ss_pred             e--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc----cceEEEecCCCCcEEEE
Confidence            2  3333 466666676666543221111111111111111122222  1111111111    22356666677777776


Q ss_pred             EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001362          571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  648 (1092)
Q Consensus       571 ~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  648 (1092)
                      .....  ...|+.+++..+ ..+-.|+...-+..|+.++ +..+...... ..+.|..+.=.|+++ |..|+.+|-++.
T Consensus       370 v~q~R--g~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~  443 (671)
T COG3292         370 VHQLR--GMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR  443 (671)
T ss_pred             eeecc--ccccchhhhccC-CcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec
Confidence            54433  355777777764 4566666664566677666 3333333222 234577777788887 778888776543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.35  E-value=5.7  Score=49.29  Aligned_cols=172  Identities=14%  Similarity=0.184  Sum_probs=100.3

Q ss_pred             cccCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC
Q 001362          318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1092)
Q Consensus       318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~  397 (1092)
                      .+..+|+..+..+. |...-+.+-+-|.=.+  |--+.|+.+.+|+.+++.....                   +.+-..
T Consensus        63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~-------------------~d~~sh  120 (1311)
T KOG1900|consen   63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAE-------------------YDGLSH  120 (1311)
T ss_pred             ccccCCHHHHHHhc-Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCcccc-------------------ccchhh
Confidence            44667776666655 4334444555554332  3335789999999999655432                   223334


Q ss_pred             cEEEEE--------ECCCCCEEEEEeCCCEEEEEEccCCCcccce------EEEcccccceeEEEEecCCCcEEEEEEeC
Q 001362          398 SVNRVV--------WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGD  463 (1092)
Q Consensus       398 ~V~~l~--------~spdg~~las~~~d~~i~iwd~~~~~~~~~~------~~~~~h~~~v~~~~~s~d~~~l~l~s~~~  463 (1092)
                      .|..+.        |-|.=++|++...--.|.|+-+.-.+.....      ..+....-.|.|+....+|+  ++. +|.
T Consensus       121 tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~  197 (1311)
T KOG1900|consen  121 TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGR  197 (1311)
T ss_pred             hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eec
Confidence            444443        4445566666656666777766533221111      11222245688999888898  454 555


Q ss_pred             CCcEEEEEC----CCC---c-e----------------eEEEe-cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC
Q 001362          464 DKTIKVWDA----VTG---S-R----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS  518 (1092)
Q Consensus       464 d~~i~vwd~----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  518 (1092)
                      ||  .+|.+    ..|   + +                +-.+. .+..+|..+.+..  .-.++.+-+..|+|.+||+..
T Consensus       198 dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  198 DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence            66  44432    111   1 1                11222 4567888888843  346888899999999999875

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.15  E-value=1.6  Score=29.85  Aligned_cols=31  Identities=10%  Similarity=0.210  Sum_probs=22.4

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCC--CcEEEE
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLW  362 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d--~~v~iw  362 (1092)
                      .....-.+.+|||||++++.++..+  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3445778899999999888887777  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=87.69  E-value=47  Score=36.28  Aligned_cols=111  Identities=8%  Similarity=-0.029  Sum_probs=55.3

Q ss_pred             CCCEEEEEeCCC-----cEEEEEcCCCcee-eeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe------CCcEEEEEc
Q 001362          897 ALNILVSSGGDA-----QIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH------ETHLAIYEA  964 (1092)
Q Consensus       897 dg~~l~s~s~Dg-----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~------d~~i~lwd~  964 (1092)
                      ++++++.|+.++     .+..+|+.+.+.. ....+......     .-...+..-++++.+.+.      ...+..||.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-----~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~  146 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-----FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL  146 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-----ccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence            566777777643     4666677664421 11111111111     011122234566666642      135888998


Q ss_pred             CCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCc----EEEEEcCCCce
Q 001362          965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT----LSIHEASNLEV 1012 (1092)
Q Consensus       965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~----i~vwd~~~~~~ 1012 (1092)
                      .+.+-...-......+....+...++++.+.|+.++.    +..||..+...
T Consensus       147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            7665432210011122233334567888888887643    56788877654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=87.54  E-value=43  Score=43.32  Aligned_cols=134  Identities=13%  Similarity=0.055  Sum_probs=80.0

Q ss_pred             EeCCCcEEEEEcCCce-------eeEee---------ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001362          862 GMDDSTILIYNARSSE-------VISKL---------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS  925 (1092)
Q Consensus       862 g~~dg~v~iwd~~~~~-------~~~~l---------~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~  925 (1092)
                      |-.||.|.-||-.+..       -+..|         .-..+.|..+.+++...-++-+. +..+.+=-.. .+......
T Consensus       619 ~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~~r-~~~e~G~~  696 (1774)
T PF11725_consen  619 GLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQRR-NKVELGDA  696 (1774)
T ss_pred             eeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-Cccccccccc-CCCCCCcc
Confidence            4568999999976521       11111         11345677777777655554332 2222210001 11111123


Q ss_pred             eecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 001362          926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus       926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~v 1004 (1092)
                      +...+     ...|+++|+-.+.++++....|.+.... ..+..+..-..+-.+.|..++......+.+ -..+|.++-
T Consensus       697 l~Gl~-----~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf~  768 (1774)
T PF11725_consen  697 LEGLE-----DRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYA-LTSTGELFR  768 (1774)
T ss_pred             ccCCC-----cCcceeEEEEcCCceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeE-ecCCCceee
Confidence            33333     1368999999999999998889999988 667665554555689999999988765444 556776553

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.49  E-value=48  Score=36.19  Aligned_cols=164  Identities=13%  Similarity=0.121  Sum_probs=91.0

Q ss_pred             CCCeEEEEEcCCCCCEEEEEeCCCc------EEEEEcCC--c--eee-----EeeccccC--------CeEEEEEcCCCC
Q 001362          843 SPTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EVI-----SKLEGHSK--------RVTGLVFSDALN  899 (1092)
Q Consensus       843 ~~~i~~l~~s~~d~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~spdg~  899 (1092)
                      -+.+..+++.+ ++..+++.+.+|.      +..+++..  +  ..+     ..+..-.+        ..-+|++.++|.
T Consensus        19 ~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            35678889987 3445555677777      66665543  1  111     11111111        344788888888


Q ss_pred             EEEEEeCC------CcEEEEEcCCCceeeeeeeecCC-------CCcCCCCCceEEEEecCCCEEEEE------eCC--c
Q 001362          900 ILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV------HET--H  958 (1092)
Q Consensus       900 ~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~l~~s~dg~~la~~------~d~--~  958 (1092)
                      ++++.=.+      ..|..++.. +.......+...-       ..........+++++|||+.|.+.      .|+  .
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            88877666      678778776 4432211111100       112233578999999999955442      222  1


Q ss_pred             -------EEE--EEcCC-ceeeeee---ccC-----CCCCEEEEEEecCCCEEEEEE-----CCCcEEEEEcC
Q 001362          959 -------LAI--YEAEE-LTCLKQW---FPI-----SSVPISQATFSCDCRMVFTSF-----VDGTLSIHEAS 1008 (1092)
Q Consensus       959 -------i~l--wd~~~-~~~~~~~---~~~-----h~~~v~~l~fs~dg~~l~t~~-----~Dg~i~vwd~~ 1008 (1092)
                             +++  ||..+ ++....+   ...     ....|+.+.+-+|+++|+.-=     ....++|+.+.
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence                   444  45444 3222221   111     357889999999999777421     23456666554

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=87.28  E-value=68  Score=37.69  Aligned_cols=105  Identities=17%  Similarity=0.212  Sum_probs=61.7

Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCc--eEEecCC-CCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001362          496 KENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAP-GLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1092)
Q Consensus       496 ~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~-~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1092)
                      ..++..++.+..+|.+....+.....  ....-+. .....++++-.+| .+++.++..  +++.+..|....-+.+..+
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~--gds~l~~~~~~~l~~~~~~  296 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEF--GDSQLLQISLSNLEVLDSL  296 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESS--S-EEEEEEESESEEEEEEE
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEec--CCcEEEEEeCCCcEEEEec
Confidence            45667899999999998877665442  1222112 3345566665555 466677664  4688888887666777777


Q ss_pred             eeccccCCceEEEEEcCC----CC------EEEEEe---CCCcEEEEE
Q 001362          572 QGLQLQHNSVSVVHFDTA----KD------QILAAG---DDHVIKIWD  606 (1092)
Q Consensus       572 ~~~~~~~~~v~~~~~~p~----~~------~l~~~s---~dg~i~iwd  606 (1092)
                      ...    ++|..+++.+.    ..      .+++++   .+|.+++..
T Consensus       297 ~N~----~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr  340 (504)
T PF10433_consen  297 PNW----GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR  340 (504)
T ss_dssp             --------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred             cCc----CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence            664    48888877532    22      566654   567777764

...

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.11  E-value=9.2  Score=48.22  Aligned_cols=68  Identities=10%  Similarity=0.166  Sum_probs=44.1

Q ss_pred             ceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCce
Q 001362          939 ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus       939 v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
                      +.+..+...+..+.....+.+-+|+.........+...+...      +.++..++++-.||.+.+||...|..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  201 SLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE------SRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             cceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC------ccCCceEEEEEecCCEEeeecCCCce
Confidence            444444445555555555666666655444433333222211      88999999999999999999999866

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=86.88  E-value=16  Score=40.34  Aligned_cols=142  Identities=15%  Similarity=0.223  Sum_probs=87.8

Q ss_pred             cCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC-------CCCEEEEEeCCCcEEEEEcCC-ceeeEe
Q 001362          812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH-------DNNVIAIGMDDSTILIYNARS-SEVISK  881 (1092)
Q Consensus       812 ~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-------d~~~lasg~~dg~v~iwd~~~-~~~~~~  881 (1092)
                      .|..++..-+  ...++-.|++.|+.+.....|...  -+.|.|.       +.+.|+ |-.+..|.-.|.+- |..+..
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence            3444444443  266888899999999888877655  4666662       223444 55555555555432 322222


Q ss_pred             eccccCCeEEEEEcC----CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCC
Q 001362          882 LEGHSKRVTGLVFSD----ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET  957 (1092)
Q Consensus       882 l~~h~~~V~~l~~sp----dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~  957 (1092)
                      .. ....++.-.||.    ...++|.+|.-|.|++||--......  .+.      ..+..|..+..+.+|+++++....
T Consensus       554 ~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt--alP------~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         554 VE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT--ALP------GLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             ee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhh--cCc------ccccceeeeEeecCCcEEEEeecc
Confidence            11 122233333332    45699999999999999976522111  111      122468899999999999998888


Q ss_pred             cEEEEEcC
Q 001362          958 HLAIYEAE  965 (1092)
Q Consensus       958 ~i~lwd~~  965 (1092)
                      .+.+.|+.
T Consensus       625 yllL~d~~  632 (776)
T COG5167         625 YLLLTDVP  632 (776)
T ss_pred             eEEEEecc
Confidence            88888875

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=86.67  E-value=0.13  Score=55.47  Aligned_cols=242  Identities=16%  Similarity=0.117  Sum_probs=137.1

Q ss_pred             EEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE
Q 001362          739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF  818 (1092)
Q Consensus       739 ~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~  818 (1092)
                      ...+.+.+.-++.++.+..+..||-....                       ....     ........+++..++..++
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~agq~-----------------------~le~-----n~tg~aldm~wDkegdvla   90 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAGQV-----------------------ILEL-----NPTGKALDMAWDKEGDVLA   90 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhcce-----------------------eccc-----CCchhHhhhhhccccchhh
Confidence            44566777668888877777776632211                       1111     1233445677777777776


Q ss_pred             EEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcC
Q 001362          819 SAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD  896 (1092)
Q Consensus       819 ~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp  896 (1092)
                      ...  .+.+.+||+.+....+--.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|...++++++.+
T Consensus        91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen   91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL  169 (615)
T ss_pred             hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence            665  58899999975432211111111122278999 889999999999999999988776666656999999999998


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCC---ceEEEEecCCCEEEEEeCCcEEEE--Ec--CCcee
Q 001362          897 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS---ETHIQFHKDQTRFLLVHETHLAIY--EA--EELTC  969 (1092)
Q Consensus       897 dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---v~~l~~s~dg~~la~~~d~~i~lw--d~--~~~~~  969 (1092)
                      .+ +.+.++.|..+.+-...+.....    ....+... ...   +..=.|..-|..+...-.+.+.+.  .+  ..+ +
T Consensus       170 Ed-~vil~dcd~~L~v~~qegeta~l----tevggepd-nm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~-p  242 (615)
T KOG2247|consen  170 ED-YVILCDCDNTLSVTTQEGETASL----TEVGGEPD-NMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDE-P  242 (615)
T ss_pred             cc-eeeecCcHHHHHHhhhccceeee----eeccCccc-hhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCC-c
Confidence            75 55667777665544433321111    01111110 000   011123333444444222221111  11  111 1


Q ss_pred             eeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeec
Q 001362          970 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       970 ~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      ....+....+.+.++.|--||. |.-+-.-|.|..-.+.++++...|.
T Consensus       243 val~fq~~~gni~cyrwylDg~-i~igf~ag~iV~iS~h~aeLgaeff  289 (615)
T KOG2247|consen  243 VALQFQEKYGNIHCYRWYLDGY-ILIGFDAGYIVSISAHNAELGAEFF  289 (615)
T ss_pred             cceEeeecCCceeEEEEecccc-ccccccceeEEEEeccchHHHHHHH
Confidence            1112223366788888888885 4446666777777788887765554

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=86.59  E-value=70  Score=37.12  Aligned_cols=193  Identities=12%  Similarity=0.156  Sum_probs=91.2

Q ss_pred             EEEEEE---eCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCc-
Q 001362          456 ISVITC---GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-  531 (1092)
Q Consensus       456 l~l~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-  531 (1092)
                      +++++.   ...+...+.| ..|.....+.........  |...++|.+++...  +.+..+|+.. +........... 
T Consensus       116 l~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~~~~~  189 (477)
T PF05935_consen  116 LYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDLPGGYY  189 (477)
T ss_dssp             EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred             EEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce--eeEcCCCCEEEecC--CceEEEcCCC-CEEEeeecCCccc
Confidence            355555   3445566667 556555554332222111  22355776666544  7777777753 333333333321 


Q ss_pred             --eEEEEEccCCCEEEEEec---------CCCCceeEEEEeCCCCeEEEEEeeccc----------------------cC
Q 001362          532 --CTRMAYSANGRRLFSCGT---------SKEGESFLVEWNESEGAIKRTYQGLQL----------------------QH  578 (1092)
Q Consensus       532 --i~~~~~s~dg~~l~~~~~---------~~~~~~~i~iwd~~~~~~~~~~~~~~~----------------------~~  578 (1092)
                        -..+..-|+|++|+.+..         ...-...|..+| .+|+.+........                      ..
T Consensus       190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~  268 (477)
T PF05935_consen  190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR  268 (477)
T ss_dssp             -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred             ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence              234677799999887762         111123466777 77777665432110                      00


Q ss_pred             --CceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEEEeCCCCCCCC-ceEEEcc------------------CCCE
Q 001362          579 --NSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPEN-PRICFNK------------------NGTL  636 (1092)
Q Consensus       579 --~~v~~~~~~p~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~v~~s~------------------~~~~  636 (1092)
                        -.+.++.+.+....|+..+. -..|...|..+++....+..+.....- ....+.|                  -|++
T Consensus       269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH  348 (477)
T PF05935_consen  269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQH  348 (477)
T ss_dssp             BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-E
T ss_pred             CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCccccccc
Confidence              23688999895555655555 448888999999998888665332211 1111111                  2566


Q ss_pred             EEEEeCCC---eEEEEECCCCc
Q 001362          637 LAVIANEN---RIKILETPESN  655 (1092)
Q Consensus       637 l~~~~~dg---~i~iw~~~~~~  655 (1092)
                      -+.-..+|   .|.+||-...+
T Consensus       349 ~~~~~~~g~~~~l~vFDNg~~r  370 (477)
T PF05935_consen  349 TAHLIPDGPQGNLLVFDNGNGR  370 (477)
T ss_dssp             EEEE-TTS---SEEEEE--TTG
T ss_pred             ceEEcCCCCeEEEEEEECCCCC
Confidence            66666777   88888876553

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=86.52  E-value=39  Score=39.13  Aligned_cols=145  Identities=13%  Similarity=0.069  Sum_probs=72.4

Q ss_pred             CCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC--CCCcCCCCCceE
Q 001362          864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP--DGVMTLAPSETH  941 (1092)
Q Consensus       864 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~  941 (1092)
                      ..+...++|.. |.++..+.........+.+.++|.+++..+  ..++.+|+.+.. .....+...  .-|       ..
T Consensus       126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v-~~~~~l~~~~~~~H-------HD  194 (477)
T PF05935_consen  126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV-IWEYDLPGGYYDFH-------HD  194 (477)
T ss_dssp             BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E-EEEEE--TTEE-B--------S-
T ss_pred             CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE-EEeeecCCcccccc-------cc
Confidence            34455666654 455544432222111166778998888665  678888887532 221122110  112       24


Q ss_pred             EEEecCCCEEEEEe--------------CCcEEEEEcCCceeeeeeccC-C-------------------------CCCE
Q 001362          942 IQFHKDQTRFLLVH--------------ETHLAIYEAEELTCLKQWFPI-S-------------------------SVPI  981 (1092)
Q Consensus       942 l~~s~dg~~la~~~--------------d~~i~lwd~~~~~~~~~~~~~-h-------------------------~~~v  981 (1092)
                      +..-|+|++|+.+.              +..|..+| .+|+.+..|... |                         ---+
T Consensus       195 ~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~  273 (477)
T PF05935_consen  195 IDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHI  273 (477)
T ss_dssp             EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--E
T ss_pred             cEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcccc
Confidence            77889999888754              23466666 677666553211 1                         1347


Q ss_pred             EEEEEec-CCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001362          982 SQATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus       982 ~~l~fs~-dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
                      .++.+.+ |+.+|+++=.-..|...|..++++...+....
T Consensus       274 Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~  313 (477)
T PF05935_consen  274 NSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG  313 (477)
T ss_dssp             EEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred             CccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence            8889988 55555555444588888988999988877544

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=86.51  E-value=14  Score=37.72  Aligned_cols=148  Identities=11%  Similarity=0.043  Sum_probs=83.1

Q ss_pred             EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC---CeEEEEEeeccccCCceEEEEEcC
Q 001362          512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~p  588 (1092)
                      .+||+.+.+..........-+.+-++-+||+.+.+++. .++...+++++..+   ..........-.....-.+...-|
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            46888776654433333334445567899999998875 34667788888765   111111111001112334456678


Q ss_pred             CCCEEEEEeCCC-cEEEEECCC-CceEEE---EeC---CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeec
Q 001362          589 AKDQILAAGDDH-VIKIWDMNK-VQLLTT---IDA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA  660 (1092)
Q Consensus       589 ~~~~l~~~s~dg-~i~iwd~~~-~~~~~~---~~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  660 (1092)
                      ||+.++.|+... +..+|.... ......   +..   ......-..+...|+|++++.+..+  -.|||..+.+.+..+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence            999999987664 345555422 111111   110   1111223467788999999888765  456688877665555


Q ss_pred             cc
Q 001362          661 GV  662 (1092)
Q Consensus       661 ~~  662 (1092)
                      ..
T Consensus       206 P~  207 (243)
T PF07250_consen  206 PD  207 (243)
T ss_pred             CC
Confidence            43

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.41  E-value=4.8  Score=40.73  Aligned_cols=72  Identities=10%  Similarity=-0.028  Sum_probs=55.0

Q ss_pred             EEEecCCCEEEE-EeCCcEEEEEcCCceeeeee------cc-------CCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001362          942 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       942 l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~------~~-------~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
                      +.+..++.+|++ ..+|.+++||+.+++.+...      +.       .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            446677777776 89999999999998876442      22       3467889999999998888765 588999998


Q ss_pred             CCCceEE
Q 001362         1008 SNLEVQC 1014 (1092)
Q Consensus      1008 ~~~~~~~ 1014 (1092)
                      +-+....
T Consensus        95 ~L~~W~~  101 (219)
T PF07569_consen   95 DLGCWIR  101 (219)
T ss_pred             ccceeEE
Confidence            8775553

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK13613 lipoprotein LpqB; Provisional

Probab=86.37  E-value=79  Score=37.58  Aligned_cols=152  Identities=13%  Similarity=0.103  Sum_probs=86.3

Q ss_pred             CeEEEEEcCCCCCEEEEEeCCC-cEEEEEcCCcee-----eEeeccccCCeEEEEEcCCCCEEEEEeC--CC--cEEEEE
Q 001362          845 TATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEV-----ISKLEGHSKRVTGLVFSDALNILVSSGG--DA--QIFVWD  914 (1092)
Q Consensus       845 ~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~-----~~~l~~h~~~V~~l~~spdg~~l~s~s~--Dg--~i~iwd  914 (1092)
                      .+.+++.++ ++..+|....++ .+++..+..+..     ...+.  ...++.-.|.++| .+-+...  ++  .+++..
T Consensus       364 ~~~s~avS~-~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~  439 (599)
T PRK13613        364 PLRRVAVSR-DESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQ  439 (599)
T ss_pred             CccceEEcC-CCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCC-CEEEecCCCCCceEEEEEc
Confidence            678999999 788888777666 555555433322     12222  2346777888887 5555532  22  255555


Q ss_pred             cCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-Ee---CCcEEEEEcC---Cce-eeee---eccCCCCCEEE
Q 001362          915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH---ETHLAIYEAE---ELT-CLKQ---WFPISSVPISQ  983 (1092)
Q Consensus       915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~---d~~i~lwd~~---~~~-~~~~---~~~~h~~~v~~  983 (1092)
                      - +++...   +....   .....|..+..|+||..+|. ..   .++|+|--+.   .|. .+..   +... ...+.+
T Consensus       440 ~-~G~~~~---V~~~~---l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~-l~~v~~  511 (599)
T PRK13613        440 G-DGEPVE---VRTPE---LDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPE-LEDVTD  511 (599)
T ss_pred             C-CCcEEE---eeccc---cCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccC-CCccce
Confidence            3 333221   22211   00126999999999999987 32   2556655442   332 1111   1112 335899


Q ss_pred             EEEecCCCEEEEEE-CCCcEEEEEcC
Q 001362          984 ATFSCDCRMVFTSF-VDGTLSIHEAS 1008 (1092)
Q Consensus       984 l~fs~dg~~l~t~~-~Dg~i~vwd~~ 1008 (1092)
                      +.|..++.+++.+. .++...+|.+.
T Consensus       512 ~~W~~~~sL~Vlg~~~~~~~~v~~v~  537 (599)
T PRK13613        512 MSWAGDSQLVVLGREEGGVQQARYVQ  537 (599)
T ss_pred             eEEcCCCEEEEEeccCCCCcceEEEe
Confidence            99999998877553 33344555544

>PRK13614 lipoprotein LpqB; Provisional

Probab=86.29  E-value=47  Score=38.96  Aligned_cols=158  Identities=14%  Similarity=0.111  Sum_probs=88.6

Q ss_pred             CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee-EeeccccCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCC-Cce
Q 001362          845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDG-WGI  920 (1092)
Q Consensus       845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--~i~iwd~~~-~~~  920 (1092)
                      .+.+++.++ ++..+|....++. .+|-...+... ..+.+  ..++.-.|.++| ++-++..+.  .|....-.. ++.
T Consensus       344 ~~~s~avS~-~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g--~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~  418 (573)
T PRK13614        344 GPASPAESP-VSQTVAFLNGSRT-TLYTVSPGQPARALTSG--STLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEG  418 (573)
T ss_pred             cccceeecC-CCceEEEecCCCc-EEEEecCCCcceeeecC--CCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccc
Confidence            678899999 8888888877762 33433323332 23333  347777888887 666655443  444443221 111


Q ss_pred             eeee--eeecCCCCcCCCCCceEEEEecCCCEEEE--EeCCc--EEEEEc---CCceeeee--e-ccCCCCCEEEEEEec
Q 001362          921 QTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETH--LAIYEA---EELTCLKQ--W-FPISSVPISQATFSC  988 (1092)
Q Consensus       921 ~~~~--~~~~~~~~~~~~~~v~~l~~s~dg~~la~--~~d~~--i~lwd~---~~~~~~~~--~-~~~h~~~v~~l~fs~  988 (1092)
                      ....  .+.. ...  ....|..+..|+||..++.  ..++.  |.|--+   ..|.....  . ..++...+.++.|..
T Consensus       419 ~~~~~~~v~~-~~l--~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~  495 (573)
T PRK13614        419 AQAPTVTLTA-DWL--AGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVG  495 (573)
T ss_pred             ccccceeecc-ccc--CCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcC
Confidence            0000  1111 111  1124999999999999887  34665  666544   34442211  1 112346889999999


Q ss_pred             CCCEEEEEEC-C--CcEEEEEcCCC
Q 001362          989 DCRMVFTSFV-D--GTLSIHEASNL 1010 (1092)
Q Consensus       989 dg~~l~t~~~-D--g~i~vwd~~~~ 1010 (1092)
                      ++.+++.+.. +  ..+++..+..|
T Consensus       496 ~~sl~V~~~~~~~~~~~~~v~v~~g  520 (573)
T PRK13614        496 DSTVVVTKASATSNVVPELLSVDAG  520 (573)
T ss_pred             CCEEEEEeccCCCcceEEEEEeCCC
Confidence            9987776542 2  34566666544

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=86.24  E-value=1e+02  Score=38.80  Aligned_cols=25  Identities=28%  Similarity=0.256  Sum_probs=18.5

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCe
Q 001362          733 KANKISRLTYNNGGQAIFALASNGV  757 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~  757 (1092)
                      +-+.+.+++++|||..+++-..+-.
T Consensus       660 ~lnsp~alaVsPdg~v~IAD~gN~r  684 (1899)
T KOG4659|consen  660 KLNSPYALAVSPDGDVIIADSGNSR  684 (1899)
T ss_pred             ccCCcceEEECCCCcEEEecCCchh
Confidence            5677889999999997666555433

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=86.19  E-value=59  Score=35.91  Aligned_cols=43  Identities=5%  Similarity=-0.150  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC
Q 001362          957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD  999 (1092)
Q Consensus       957 ~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D  999 (1092)
                      +.+..||..+.+-...-.......-.......++++.+.|+.+
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~  210 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI  210 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence            4588899876654322111111111122234577888888754

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.16  E-value=3.6  Score=40.04  Aligned_cols=32  Identities=38%  Similarity=0.591  Sum_probs=26.4

Q ss_pred             CcEEEEEECCCC------CEEEEEeCCCEEEEEEccCC
Q 001362          397 VSVNRVVWSPDG------SLLGVAYSKHIVQLYAYHGG  428 (1092)
Q Consensus       397 ~~V~~l~~spdg------~~las~~~d~~i~iwd~~~~  428 (1092)
                      ..|.+++|||-|      -+||+.+.++.|.||.....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            389999999954      47888899999999987653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.11  E-value=2.9  Score=42.32  Aligned_cols=74  Identities=9%  Similarity=0.122  Sum_probs=51.6

Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCceeeee-ee-ecCCCC----cCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCc
Q 001362          894 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR-SL-QTPDGV----MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL  967 (1092)
Q Consensus       894 ~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~-~~~~~~----~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~  967 (1092)
                      +..++++|+..+.+|.+++||+.+.+..... .+ ......    ......|..+.++.+|.-|++-.+|..+.|+..=+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~   97 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG   97 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence            4457889999999999999999987644322 11 111100    02224689999999999888877788899987633

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=85.31  E-value=3.1  Score=44.82  Aligned_cols=159  Identities=9%  Similarity=0.078  Sum_probs=97.6

Q ss_pred             CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceee-EEec-CCCC----CeE-EEEEcCCCCCEEEEEeCCCcEEEE-E
Q 001362          801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI-LTIM-PPSP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N  872 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~-~~~~-~~~~----~i~-~l~~s~~d~~~lasg~~dg~v~iw-d  872 (1092)
                      ....+..+-..|||+.+..-+..++.++++.+.... +.+. ...+    .|+ ++..-. ++.-|.+++.||-|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence            345677888999999999988889999988754322 1111 1112    122 222233 67778889999988776 4


Q ss_pred             cCCc-e----eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC
Q 001362          873 ARSS-E----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1092)
Q Consensus       873 ~~~~-~----~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  947 (1092)
                      +..+ .    .+..++-...++..+.--.+.+-+++-+..|++.++.....+..   ..+..-      ..+..+++||.
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l---L~~~~~------~~~~~~~~Sp~  368 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL---LFERAY------QAPQLVAMSPN  368 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce---ehhhhh------cCcceeeeCcc
Confidence            4332 2    12222222233433333334466777888888887765542211   111111      13668999999


Q ss_pred             CCEEEEEeCCcEEEEEcCCcee
Q 001362          948 QTRFLLVHETHLAIYEAEELTC  969 (1092)
Q Consensus       948 g~~la~~~d~~i~lwd~~~~~~  969 (1092)
                      +.+|++-..|.++++.+++...
T Consensus       369 ~~~Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         369 QAYLLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             cchheeecCCceEEEEecCCCC
Confidence            9999998889999999876543

>PRK13613 lipoprotein LpqB; Provisional

Probab=84.71  E-value=91  Score=37.07  Aligned_cols=190  Identities=9%  Similarity=0.024  Sum_probs=101.4

Q ss_pred             CeeEEEEecCCCEEEEEeC-C-eEEEEEcCCcee----eEEecCCCCCeEEEEEcCCCCCEEEEEeC--CC--cEEEEEc
Q 001362          804 AVPCFALSKNDAYLFSASG-G-VISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMD--DS--TILIYNA  873 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sd-g-~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg--~v~iwd~  873 (1092)
                      .+.+++.|+++..+|...+ + .+.+..+..+..    ..... .....+.-.|.+ ++ .+-+...  ++  .+++..-
T Consensus       364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~~  440 (599)
T PRK13613        364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQG  440 (599)
T ss_pred             CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CC-CEEEecCCCCCceEEEEEcC
Confidence            5778999999999887763 3 466655533322    11111 123466667777 45 3434322  22  2555543


Q ss_pred             CCceeeEe-eccccC-CeEEEEEcCCCCEEEEEeC---CCcEEEEEcCC---CceeeeeeeecCCCCcCCCCCceEEEEe
Q 001362          874 RSSEVISK-LEGHSK-RVTGLVFSDALNILVSSGG---DAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFH  945 (1092)
Q Consensus       874 ~~~~~~~~-l~~h~~-~V~~l~~spdg~~l~s~s~---Dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~l~~s  945 (1092)
                       +|+.... .....+ .|+.+..|+||-.+|....   .+.|.|=-+..   +............+.    ..+.+++|.
T Consensus       441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~W~  515 (599)
T PRK13613        441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMSWA  515 (599)
T ss_pred             -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeEEc
Confidence             4443210 112333 7999999999988776544   35565554433   221111122221221    248899999


Q ss_pred             cCCCEEEEE--eC--CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEECCCcE
Q 001362          946 KDQTRFLLV--HE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTL 1002 (1092)
Q Consensus       946 ~dg~~la~~--~d--~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~Dg~i 1002 (1092)
                      .++.+++.+  .+  ..+...++........ ..+.-..+..++-..+.+ .|+.+..++.|
T Consensus       516 ~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~-~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v  576 (599)
T PRK13613        516 GDSQLVVLGREEGGVQQARYVQVDGSTPPAS-APAAVTGVESITASEDERLPLVAGTSEDGI  576 (599)
T ss_pred             CCCEEEEEeccCCCCcceEEEecCCcCcccc-cccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence            999988854  33  3344445443322211 112344566677776666 45543555554

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=84.50  E-value=27  Score=38.09  Aligned_cols=162  Identities=13%  Similarity=0.131  Sum_probs=89.1

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee-EEEEe
Q 001362          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP-CFALS  811 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~-~~~~s  811 (1092)
                      ....+..+-..|||+.+..-+. ..+.++++........         ++-+-..|.           ....|. .+..-
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r---------kl~~dspg~-----------~~~~Vte~l~lL  277 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR---------KLVDDSPGD-----------SRHQVTEQLYLL  277 (733)
T ss_pred             CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh---------hhhhcCCCc-----------hHHHHHHHHHHH
Confidence            4466778889999998887776 5788888766543111         001111110           001111 11112


Q ss_pred             cCCCEEEEEe-CCeEEEE-EcCCc-----eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc
Q 001362          812 KNDAYLFSAS-GGVISLY-IVMTF-----KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG  884 (1092)
Q Consensus       812 ~dg~~l~~~s-dg~i~iw-d~~~~-----~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~  884 (1092)
                      ..|..+.+++ ||.|.-| |...+     ..++.++-...++..+.--. ..+-+++-+..|++.++.....+.+-.-. 
T Consensus       278 ~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~-  355 (733)
T COG4590         278 SGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER-  355 (733)
T ss_pred             hCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh-
Confidence            2333344443 6666555 44322     12233332333444444333 45667777888888888765544332222 


Q ss_pred             ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001362          885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW  918 (1092)
Q Consensus       885 h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~  918 (1092)
                      --..+.-+++||.+.+|++-. .|.|+++.+++.
T Consensus       356 ~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr  388 (733)
T COG4590         356 AYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENR  388 (733)
T ss_pred             hhcCcceeeeCcccchheeec-CCceEEEEecCC
Confidence            223566789999999999754 456999988764

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=84.24  E-value=93  Score=36.53  Aligned_cols=80  Identities=10%  Similarity=0.165  Sum_probs=48.1

Q ss_pred             CCEEEEEeCCeEEEEEcCCceeeEEecCC-CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec-c----ccC
Q 001362          814 DAYLFSASGGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-G----HSK  887 (1092)
Q Consensus       814 g~~l~~~sdg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~----h~~  887 (1092)
                      +..++-.....|++.+...++........ ...|.+.+..   +.+++.+..++.+..+.+.......... .    ...
T Consensus       418 ~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~---~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (504)
T PF10433_consen  418 DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIN---DPQVLVALSGGELVYFELDDNKISVSDNDETILELDN  494 (504)
T ss_dssp             TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEES---SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS
T ss_pred             CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEEC---CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC
Confidence            55666666777999998877777665433 3456666664   3467777778999999988766542222 1    457


Q ss_pred             CeEEEEEcC
Q 001362          888 RVTGLVFSD  896 (1092)
Q Consensus       888 ~V~~l~~sp  896 (1092)
                      .|.|+...|
T Consensus       495 eis~l~i~p  503 (504)
T PF10433_consen  495 EISCLSIEP  503 (504)
T ss_dssp             -EEEEE---
T ss_pred             ceEEEEeCC
Confidence            788887765

...

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=83.67  E-value=58  Score=33.73  Aligned_cols=276  Identities=10%  Similarity=0.063  Sum_probs=129.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceee
Q 001362          579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD  658 (1092)
Q Consensus       579 ~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  658 (1092)
                      +.+..+.++  +++++.+..+.-++|.|+.+......+..-....  ..-.+.-.|++..++..|.-+.+.|+.+.....
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g--yaygv~vsGn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG--YAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCc--eEEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence            455566665  4678888888889999998765443332211101  223334458888888866677788887653322


Q ss_pred             e---cccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccc
Q 001362          659 A---AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN  735 (1092)
Q Consensus       659 ~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~  735 (1092)
                      .   ..........++++                        |++-..+..|+.+.+-|+.........    .......
T Consensus       163 lagrya~~~~d~~~v~IS------------------------Gn~AYvA~~d~GL~ivDVSnp~sPvli----~~~n~g~  214 (370)
T COG5276         163 LAGRYALPGGDTHDVAIS------------------------GNYAYVAWRDGGLTIVDVSNPHSPVLI----GSYNTGP  214 (370)
T ss_pred             eeeeeccCCCCceeEEEe------------------------cCeEEEEEeCCCeEEEEccCCCCCeEE----EEEecCC
Confidence            1   11122222223332                        555556667777778776532211110    0011122


Q ss_pred             cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001362          736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1092)
Q Consensus       736 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~  815 (1092)
                      .+.++..+++..+++.... | +.+-+....+           .+.++.           .-+......++.+.++  ++
T Consensus       215 g~~sv~vsdnr~y~vvy~e-g-vlivd~s~~s-----------sp~~~g-----------syet~~p~~~s~v~Vs--~~  268 (370)
T COG5276         215 GTYSVSVSDNRAYLVVYDE-G-VLIVDVSGPS-----------SPTVFG-----------SYETSNPVSISTVPVS--GE  268 (370)
T ss_pred             ceEEEEecCCeeEEEEccc-c-eEEEecCCCC-----------CceEee-----------ccccCCcccccceecc--cc
Confidence            5666666666554443332 2 2222221110           011111           0000011222223333  33


Q ss_pred             EEEEEe-CCeEEEEEcCCcee---eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEE
Q 001362          816 YLFSAS-GGVISLYIVMTFKT---ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG  891 (1092)
Q Consensus       816 ~l~~~s-dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  891 (1092)
                      +...+. +.-+.+-|+.....   ...+.........+..+   +.++..+..+ +..+-+....+......+....+.+
T Consensus       269 ~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay---~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s  344 (370)
T COG5276         269 YAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY---GNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQS  344 (370)
T ss_pred             eeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe---cCeeEeccCC-ceEEEeCCChhhcccccCcceEeee
Confidence            443333 33344455442211   11111111122333332   2344444433 4445555544433333333334455


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcC
Q 001362          892 LVFSDALNILVSSGGDAQIFVWDVD  916 (1092)
Q Consensus       892 l~~spdg~~l~s~s~Dg~i~iwd~~  916 (1092)
                      .+.+-+.+.+-+...++.+.||+..
T Consensus       345 ~~v~~~~q~~y~~d~~~gl~i~~~~  369 (370)
T COG5276         345 CDVSVDTQIIYSTDYNGGLSIIEYL  369 (370)
T ss_pred             cceEEEeeEEEEeecCCCEEEEEec
Confidence            5555566778888888989999853

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=83.35  E-value=28  Score=39.41  Aligned_cols=112  Identities=12%  Similarity=0.089  Sum_probs=60.8

Q ss_pred             ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCC------CEEEEE--e-
Q 001362          885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLLV--H-  955 (1092)
Q Consensus       885 h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg------~~la~~--~-  955 (1092)
                      .-...+.|+|.|||++|++--..|.|++++-.++.......+...... .-......|+|+|+-      .+|.++  . 
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~-~ge~GLlglal~PdF~~~~~n~~lYvsyt~~  106 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVND-AQHNGLLGLALHPDFMQEKGNPYVYISYTYK  106 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceecc-CCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence            345678999999998888765569999998665432211111100000 012357899999884      344442  1 


Q ss_pred             --------CCcEEEEEcCCc-------eeeeeecc---CCCCCEEEEEEecCCCEEEEEECC
Q 001362          956 --------ETHLAIYEAEEL-------TCLKQWFP---ISSVPISQATFSCDCRMVFTSFVD  999 (1092)
Q Consensus       956 --------d~~i~lwd~~~~-------~~~~~~~~---~h~~~v~~l~fs~dg~~l~t~~~D  999 (1092)
                              ...|.-|.+...       +.+..-.+   .|.  -..|+|.|||.++++.+..
T Consensus       107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence                    123444544311       11111111   132  3457899999877766544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.23  E-value=6.9  Score=38.01  Aligned_cols=31  Identities=13%  Similarity=0.235  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCC------CEEEEEeCCCcEEEEEcCC
Q 001362          887 KRVTGLVFSDAL------NILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       887 ~~V~~l~~spdg------~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      ..|.+++|||-|      -+||+.+.++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            479999999954      5789999999999998775

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=82.02  E-value=88  Score=37.05  Aligned_cols=57  Identities=14%  Similarity=0.230  Sum_probs=35.0

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001362          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA  860 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la  860 (1092)
                      .+...+|.-....++.+..+.+.+|-.....-.....-....+.-+.|+|.....|.
T Consensus       297 k~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~  353 (1243)
T COG5290         297 KAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLL  353 (1243)
T ss_pred             hhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEE
Confidence            344556665566666666788999998765433333323456677889984333333

>PRK13614 lipoprotein LpqB; Provisional

Probab=81.91  E-value=1.2e+02  Score=35.88  Aligned_cols=160  Identities=14%  Similarity=0.056  Sum_probs=86.3

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEEcC-Ccee--
Q 001362          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNAR-SSEV--  878 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~-~~~~--  878 (1092)
                      .+.+++.|++++.+|...+..-.+|-...+...+.+. ....++.-.|.+ ++ .+-+...+.  .|..+.-. +++.  
T Consensus       344 ~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~-~g~~Lt~PS~d~-~g-~vWtv~~g~~~~vv~~~~~g~~~~~~  420 (573)
T PRK13614        344 GPASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALT-SGSTLTRPSFSP-QD-WVWTAGPGGNGRIVAYRPTGVAEGAQ  420 (573)
T ss_pred             cccceeecCCCceEEEecCCCcEEEEecCCCcceeee-cCCCccCCcccC-CC-CEEEeeCCCCceEEEEecCCCccccc
Confidence            5778899999999888874333444333233332222 123466777887 55 555544433  44444322 2111  


Q ss_pred             ----eEeeccccC-CeEEEEEcCCCCEEEEEe-CCCc--EEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCE
Q 001362          879 ----ISKLEGHSK-RVTGLVFSDALNILVSSG-GDAQ--IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  950 (1092)
Q Consensus       879 ----~~~l~~h~~-~V~~l~~spdg~~l~s~s-~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~  950 (1092)
                          ........+ .|+.+..|+||-.++... .+|.  |.|=-+.....-....+..+... .....+.+++|..++.+
T Consensus       421 ~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~-~~~~~~~sl~W~~~~sl  499 (573)
T PRK13614        421 APTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITL-AADSDADTGAWVGDSTV  499 (573)
T ss_pred             ccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceec-ccCCCcceeEEcCCCEE
Confidence                111122334 499999999998876543 4554  66654433211111112111110 00136889999999998


Q ss_pred             EEEEe----CCcEEEEEcCCc
Q 001362          951 FLLVH----ETHLAIYEAEEL  967 (1092)
Q Consensus       951 la~~~----d~~i~lwd~~~~  967 (1092)
                      ++.+.    +..+++..+..+
T Consensus       500 ~V~~~~~~~~~~~~~v~v~~g  520 (573)
T PRK13614        500 VVTKASATSNVVPELLSVDAG  520 (573)
T ss_pred             EEEeccCCCcceEEEEEeCCC
Confidence            88742    234677777544

>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

Probab=81.90  E-value=2.6  Score=38.75  Aligned_cols=57  Identities=16%  Similarity=0.372  Sum_probs=44.4

Q ss_pred             hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCccccc
Q 001362           72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHE  128 (1092)
Q Consensus        72 ~~~~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~  128 (1092)
                      ++|.++-+.||||+..|..++|..++++.-..+.....+..+.|+.+.......+++
T Consensus        29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~   85 (133)
T cd08044          29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENE   85 (133)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhH
Confidence            899999999999999999999999999865555444556677777666665554444

The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1092
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-12
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		8e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		9e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		9e-08
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-07
2h9l_A	329	Wdr5delta23 Length = 329		2e-09
2h9l_A	329	Wdr5delta23 Length = 329		1e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		4e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		7e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		8e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		9e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		9e-05
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		7e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 131/554 (23%), Positives = 231/554 (41%), Gaps = 95/554 (17%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE-IDAHVGNVNDLAFSAPCKQI 456
           SV  V +SPDG  +  A     V+L+  +G     Q L+ +  H  +V  +AFS P  Q 
Sbjct: 59  SVWGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFS-PDGQ- 111
Query: 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAW 514
           ++ +  DDKT+K+W+   G    +  GH + V+ +   P  +     I S S D  +K W
Sbjct: 112 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT----IASASDDKTVKLW 166
Query: 515 LYDS--LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572
             +   L     + +   G   +A+S +G+ + S    K     +  WN   G + +T  
Sbjct: 167 NRNGQLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLT 218
Query: 573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPEN 625
           G     +SV  V F      I +A DD  +K+W+ N  QLL T+             P+ 
Sbjct: 219 G---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDG 274
Query: 626 PRIC----------FNKNGTLLAVIANENR--IKILETPESNSVDAAGVLSDN----LRK 669
             I           +N+NG LL  +   +     +  +P+  ++ +A   SD+    L  
Sbjct: 275 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA---SDDKTVKLWN 331
Query: 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 729
            +   + T+TG   +   V+ + D +      I+  +++K+     L+ R  +   LL  
Sbjct: 332 RNGQHLQTLTGHSSSVWGVAFSPDGQT-----IASASDDKTV---KLWNRNGQ---LLQT 380
Query: 730 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 789
               ++ +  + ++  GQ I + + +    +W                        R+G 
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-----------------------RNG- 416
Query: 790 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 849
           Q +   T  S+S   V   A S +D  + SAS            + + T+   S +   +
Sbjct: 417 QLLQTLTGHSSS---VWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 473
Query: 850 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 909
           AF+P D   IA   DD T+ ++N R+ +++  L GHS  V G+ FS     + S+  D  
Sbjct: 474 AFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 531
Query: 910 IFVWDVDGWGIQTC 923
           + +W+ +G  +QT 
Sbjct: 532 VKLWNRNGQLLQTL 545

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 836 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 895
           + T+   S +   +AF+P D   IA   DD T+ ++N R+ +++  L GHS  V G+ FS
Sbjct: 50  LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 107
Query: 896 DALNILVSSGGDAQIFVWDVDGWGIQTC 923
                + S+  D  + +W+ +G  +QT 
Sbjct: 108 PDGQTIASASDDKTVKLWNRNGQLLQTL 135

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 47  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 772  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 830
            + + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 20   SSSATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 74
Query: 831  MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 890
               K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 75   YDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 133
Query: 891  GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950
               F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D + 
Sbjct: 134  CCNFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS- 184
Query: 951  FLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007
             L+V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + 
Sbjct: 185  -LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 243
Query: 1008 S 1008
            S
Sbjct: 244  S 244

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 49  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 215
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 216 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 253

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 772  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 830
            + + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 22   SSSATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 76
Query: 831  MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 890
               K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 77   YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 135
Query: 891  GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950
               F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D + 
Sbjct: 136  CCNFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS- 186
Query: 951  FLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007
             L+V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + 
Sbjct: 187  -LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 245
Query: 1008 S 1008
            S
Sbjct: 246  S 246

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 780  PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILT 838
            P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   T
Sbjct: 12   PTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 66
Query: 839  IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 898
            I       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   
Sbjct: 67   ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 125
Query: 899  NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 958
            N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++
Sbjct: 126  NLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSY 175
Query: 959  ---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
                 I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 176  DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 774  ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 832
            + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 6    SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 833  FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892
             K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 61   GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
Query: 893  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952
             F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 120  NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 169
Query: 953  LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
            +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 170  IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 191
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 776  TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 834
            T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K
Sbjct: 2    TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
Query: 835  TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894
               TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F
Sbjct: 57   FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 895  SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954
            +   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V
Sbjct: 116  NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 165
Query: 955  HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
              ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 166  SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 21  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 77  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 187
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 780  PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILT 838
            P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   T
Sbjct: 2    PTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 56
Query: 839  IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 898
            I       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   
Sbjct: 57   ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 115
Query: 899  NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 958
            N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++
Sbjct: 116  NLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSY 165
Query: 959  ---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
                 I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 166  DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 218

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 191
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 776  TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 834
            T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K
Sbjct: 2    TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
Query: 835  TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894
               TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F
Sbjct: 57   FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 895  SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954
            +   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V
Sbjct: 116  NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 165
Query: 955  HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
              ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 166  SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 26  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 82  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 139 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 192
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 193 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 230

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 774  ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 832
             +T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 1    GSTQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 55
Query: 833  FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892
             K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 56   GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 114
Query: 893  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952
             F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 115  NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 164
Query: 953  LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
            +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 165  IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 223

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 24  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 80  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 137 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 190
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 191 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 228

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 784  QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 842
            +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   TI   
Sbjct: 9    KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 63
Query: 843  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 902
                + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 64   KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 122
Query: 903  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 959
            S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 123  SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 172
Query: 960  AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
             I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 173  RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 221

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 774  ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 832
            + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 6    SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 833  FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892
             K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 61   GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
Query: 893  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952
             F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 120  NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 169
Query: 953  LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
            +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 170  IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 119/263 (45%), Gaps = 24/263 (9%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN---- 633
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N    
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVT 250
Query: 634 -GTLLAVIANENRIKI--LETPE 653
            G  +   + +N + I  L+T E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 22/242 (9%)
Query: 772  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 830
            + + T+  P   +P +   F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 1    SSSATQSKPTPVKPNYALMFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 55
Query: 831  MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 890
               K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 56   YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 891  GLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949
               F+   N++VS   D  + +WDV  G  ++T  +   P          + + F++D +
Sbjct: 115  CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP---------VSAVHFNRDGS 165
Query: 950  RFLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006
              L+V  ++     I++     CLK      + P+S   FS + + +  + +D TL + +
Sbjct: 166  --LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 1007 AS 1008
             S
Sbjct: 224  YS 225

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 42  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 98  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 155 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 208
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 209 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 246

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 776  TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 834
            T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K
Sbjct: 19   TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 73
Query: 835  TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894
               TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F
Sbjct: 74   FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 132
Query: 895  SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954
            +   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V
Sbjct: 133  NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 182
Query: 955  HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
              ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 183  SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 239

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 30  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 86  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 143 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 196
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 197 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 234

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 774  ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 832
            + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 5    SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 59
Query: 833  FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892
             K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 60   GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 118
Query: 893  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952
             F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 119  NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 168
Query: 953  LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
            +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 169  IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 227

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLAASSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 784  QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 842
            +P +  +F +   T     +AV     S N  +L ++S   +I ++     K   TI   
Sbjct: 13   KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH 67
Query: 843  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 902
                + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 68   KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 903  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 959
            S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 127  SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 960  AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
             I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 177  RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 784  QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 842
            +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   TI   
Sbjct: 13   KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 843  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 902
                + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 68   KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 903  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 959
            S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 127  SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 960  AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
             I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 177  RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 784  QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 842
            +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   TI   
Sbjct: 13   KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 843  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 902
                + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 68   KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 903  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 959
            S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 127  SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 960  AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
             I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 177  RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 119/263 (45%), Gaps = 24/263 (9%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN---- 633
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N    
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVT 250
Query: 634 -GTLLAVIANENRIKI--LETPE 653
            G  +   + +N + I  L+T E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 107/242 (44%), Gaps = 22/242 (9%)
Query: 772  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIV 830
            + + T+  P   +P +   F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 1    SSSATQSKPTPVKPNYALMFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 55
Query: 831  MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 890
               K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 56   YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 891  GLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949
               F+   N++VS   D  + +WDV  G  ++T  +   P          + + F++D +
Sbjct: 115  CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP---------VSAVHFNRDGS 165
Query: 950  RFLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006
              L+V  ++     I++     CLK      + P+S   FS + + +  + +D  L + +
Sbjct: 166  --LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Query: 1007 AS 1008
             S
Sbjct: 224  YS 225

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 807 CFALSKNDAYLFSASGGVISLYIVMTF-------KTILTIMPPSPTATSLAFNPHDNNVI 859
           C    K  A +  ASGG    ++V+         K +  +   +     +A+ PH++NVI
Sbjct: 40  CAVNPKFMALIXEASGG--GAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVI 97
Query: 860 AIGMDDSTILIYNARSS-------EVISKLEGHSKRVTGLV--FSDALNILVSSGGDAQI 910
           A G +D T++++            E +  LEGH+KRV G+V     A N+L+S+G D  I
Sbjct: 98  ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV-GIVAWHPTAQNVLLSAGXDNVI 156
Query: 911 FVWDV 915
            VWDV
Sbjct: 157 LVWDV 161

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 807 CFALSKNDAYLFSASGGVISLYIVMTF-------KTILTIMPPSPTATSLAFNPHDNNVI 859
           C    K  A +  ASGG    ++V+         K +  +   +     +A+ PH++NVI
Sbjct: 40  CAVNPKFMALICEASGG--GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVI 97
Query: 860 AIGMDDSTILIYNARSS-------EVISKLEGHSKRVTGLV--FSDALNILVSSGGDAQI 910
           A G +D T++++            E +  LEGH+KRV G+V     A N+L+S+G D  I
Sbjct: 98  ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV-GIVAWHPTAQNVLLSAGCDNVI 156
Query: 911 FVWDV 915
            VWDV
Sbjct: 157 LVWDV 161

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 122/624 (19%), Positives = 231/624 (37%), Gaps = 111/624 (17%)
Query: 391  LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 450
            +VR    +V    +S DG  +    +   +Q++    G    + L+I AH   V   AFS
Sbjct: 617  VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFS 673
Query: 451  APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDG 509
            +    I+  TC  DK +K+WD+ TG   ++++ H   V + C    ++ H + +  S D 
Sbjct: 674  SDDSYIA--TCSADKKVKIWDSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLATGSNDF 730
Query: 510  KIKAWLYDSLGAR---------VDY-----------DAPGLGCTRM--AYSANGR----- 542
             +K W  +    R         V++                G  R+    SAN R     
Sbjct: 731  FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 790
Query: 543  -RLF---------------SCGTSKEGESFLVEWN--------ESEGAIKRTYQGLQLQH 578
             R F                C  S +G+  +V            + G +   + G    H
Sbjct: 791  KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG---HH 847
Query: 579  NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
            +++    F       + A   + +++W+++    L   D  G L     + F+ +G+   
Sbjct: 848  STIQYCDFSPYDHLAVIALSQYCVELWNID--SRLKVADCRGHLSWVHGVMFSPDGSSFL 905
Query: 639  VIANENRIKILETPESNSVDAAGVLSDNL------RKLSVNPISTVTGAG-IANGSVSVN 691
              +++  I++ ET +    ++A VL   +       +  V  +  + G   IA  +  ++
Sbjct: 906  TASDDQTIRVWETKKVCK-NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 964
Query: 692  EDPKEDV-----KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR-LTYNNG 745
              P+  V      P +   A    +    +   P+   + +  S V   K  R + +   
Sbjct: 965  YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHKKAVRHIQFTAD 1021
Query: 746  GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805
            G+ + + + + V  +W W   D              ++   H              QE V
Sbjct: 1022 GKTLISSSEDSVIQVWNWQTGDY-------------VFLQAH--------------QETV 1054
Query: 806  PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865
              F L ++   L  +  G + ++ V+T +          T  S A +  D    +    D
Sbjct: 1055 KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSAD 1113
Query: 866  STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWDV-DGWGIQTC 923
             T  I++      + +L+GH+  V    FS    IL+++G D  +I +W+V DG  + +C
Sbjct: 1114 KTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSC 1172
Query: 924  RSLQTPDGVMTLAPSETHIQFHKD 947
              +   +G  T     T + F  D
Sbjct: 1173 APISVEEGTATHGGWVTDVCFSPD 1196

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 122/624 (19%), Positives = 231/624 (37%), Gaps = 111/624 (17%)
Query: 391  LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 450
            +VR    +V    +S DG  +    +   +Q++    G    + L+I AH   V   AFS
Sbjct: 610  VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFS 666
Query: 451  APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDG 509
            +    I+  TC  DK +K+WD+ TG   ++++ H   V + C    ++ H + +  S D 
Sbjct: 667  SDDSYIA--TCSADKKVKIWDSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLATGSNDF 723
Query: 510  KIKAWLYDSLGAR---------VDY-----------DAPGLGCTRM--AYSANGR----- 542
             +K W  +    R         V++                G  R+    SAN R     
Sbjct: 724  FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 783
Query: 543  -RLF---------------SCGTSKEGESFLVEWN--------ESEGAIKRTYQGLQLQH 578
             R F                C  S +G+  +V            + G +   + G    H
Sbjct: 784  KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG---HH 840
Query: 579  NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
            +++    F       + A   + +++W+++    L   D  G L     + F+ +G+   
Sbjct: 841  STIQYCDFSPYDHLAVIALSQYCVELWNID--SRLKVADCRGHLSWVHGVMFSPDGSSFL 898
Query: 639  VIANENRIKILETPESNSVDAAGVLSDNL------RKLSVNPISTVTGAG-IANGSVSVN 691
              +++  I++ ET +    ++A VL   +       +  V  +  + G   IA  +  ++
Sbjct: 899  TASDDQTIRVWETKKVCK-NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 957
Query: 692  EDPKEDV-----KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR-LTYNNG 745
              P+  V      P +   A    +    +   P+   + +  S V   K  R + +   
Sbjct: 958  YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHKKAVRHIQFTAD 1014
Query: 746  GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805
            G+ + + + + V  +W W   D              ++   H              QE V
Sbjct: 1015 GKTLISSSEDSVIQVWNWQTGDY-------------VFLQAH--------------QETV 1047
Query: 806  PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865
              F L ++   L  +  G + ++ V+T +          T  S A +  D    +    D
Sbjct: 1048 KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSAD 1106
Query: 866  STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWDV-DGWGIQTC 923
             T  I++      + +L+GH+  V    FS    IL+++G D  +I +W+V DG  + +C
Sbjct: 1107 KTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSC 1165
Query: 924  RSLQTPDGVMTLAPSETHIQFHKD 947
              +   +G  T     T + F  D
Sbjct: 1166 APISVEEGTATHGGWVTDVCFSPD 1189

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--- 520
           D T+++WD  TG+ T  F GH   V S+   + +N   I S S D  IK W  ++LG   
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 162
Query: 521 --ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
              + +  +  + C R + +++   + SCG  K     +  WN +   +K  + G     
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK----LVKVWNLANCKLKTNHIGHTGYL 218
Query: 579 NSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636
           N+V+V     + D  L A  G D    +WD+N+ + L T+D G  +     +CF+ N   
Sbjct: 219 NTVTV-----SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA---LCFSPNRYW 270
Query: 637 LAVIANENRIKILE 650
           L   A    IKI +
Sbjct: 271 LCA-ATGPSIKIWD 283

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--- 520
           D T+++WD  TG+ T  F GH   V S+   + +N   I S S D  IK W  ++LG   
Sbjct: 84  DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 139
Query: 521 --ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
              + +  +  + C R + +++   + SCG  K     +  WN +   +K  + G     
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK----LVKVWNLANCKLKTNHIGHTGYL 195
Query: 579 NSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636
           N+V+V     + D  L A  G D    +WD+N+ + L T+D G  +     +CF+ N   
Sbjct: 196 NTVTV-----SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA---LCFSPNRYW 247
Query: 637 LAVIANENRIKILE 650
           L   A    IKI +
Sbjct: 248 LCA-ATGPSIKIWD 260

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 124/315 (39%), Gaps = 49/315 (15%)
Query: 322 FPKTVAQTLIEGSSSPMS-MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI 380
            P+   +  + G  SP++ + FHPV  ++++  +      +WD  +G   F R  K    
Sbjct: 95  IPRPPEKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGD--FERTLK---- 147
Query: 381 GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH 440
                            SV  + +   G LL    +   ++L+ + G    R    +  H
Sbjct: 148 -------------GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT---MHGH 191
Query: 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 500
             NV+ ++       I  ++   DKTIK+W+  TG    +F GH   V  + P+  ++  
Sbjct: 192 DHNVSSVSIMPNGDHI--VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN--QDGT 247
Query: 501 FIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMA----YSANGRRLFSCGTSKEGE 554
            I S S D  ++ W+  +   + +       + C   A    YS+      S  T K G+
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS-ETKKSGK 306
Query: 555 --SFLVE---------WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603
              FL+          W+ S G    T  G     N V  V F +    IL+  DD  ++
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHSGGKFILSCADDKTLR 363
Query: 604 IWDMNKVQLLTTIDA 618
           +WD    + + T++A
Sbjct: 364 VWDYKNKRCMKTLNA 378

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 125/312 (40%), Gaps = 58/312 (18%)
Query: 354 TNVGDTG-LWDVNSGQKLFI-----RNFKVW--DIGAC--SMLFKTALVRDPGVSVNRVV 403
           T VG TG +W       + I     R  KVW  + G C  ++   T+ VR   +   RVV
Sbjct: 154 TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 213
Query: 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463
                + L V   +    L+   G            HV  V  + +        V++   
Sbjct: 214 SGSRDATLRVWDIETGQCLHVLMG------------HVAAVRCVQYDGR----RVVSGAY 257
Query: 464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 523
           D  +KVWD  T +  ++ +GH   VYSL     + IH + S S+D  I+ W         
Sbjct: 258 DFMVKVWDPETETCLHTLQGHTNRVYSL---QFDGIHVV-SGSLDTSIRVW--------- 304
Query: 524 DYDAPGLGCTRMAYSANGRRLFSCG--------TSKEGESFLVEWNESEGAIKRTYQGLQ 575
             D     C    ++  G +  + G         S   +S +  W+   G   +T QG  
Sbjct: 305 --DVETGNCI---HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPN 359
Query: 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---VQLLTTIDAGGGLPENPRICFNK 632
              ++V+ + F+  K+ ++ + DD  +K+WD+     ++ L T+++GG      RI    
Sbjct: 360 KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI-RAS 416
Query: 633 NGTLLAVIANEN 644
           N  L+  + + N
Sbjct: 417 NTKLVCAVGSRN 428

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 833 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---------DSTILIYNARSSEVISKLE 883
           +  ++ +  P           H N V ++  D         D++I +++  +   I  L 
Sbjct: 257 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT 316
Query: 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943
           GH    +G+   D  NILVS   D+ + +WD     I+T + LQT  G      + T +Q
Sbjct: 317 GHQSLTSGMELKD--NILVSGNADSTVKIWD-----IKTGQCLQTLQGPNKHQSAVTCLQ 369
Query: 944 FHKD 947
           F+K+
Sbjct: 370 FNKN 373

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 23/205 (11%)
Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
           L++  H G V  L ++     +S  T   D+T++VWD   G  T+ FEGH + V  L   
Sbjct: 156 LQLSGHDGGVWALKYAHGGILVSGST---DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 495 AKENIHFIFSISVDGKIKAWLYDS------LGARVDY--------DAPGLGCTRMAYSAN 540
             +NI +I + S D  +  W           G   DY        + P        + A+
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 541 GRRLFSCG---TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597
            R +   G    S   ++ L+ W+ ++        G     + +    +D  + + ++A 
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG---HTDRIYSTIYDHERKRCISAS 329
Query: 598 DDHVIKIWDMNKVQLLTTIDAGGGL 622
            D  I+IWD+   +L+ T+     L
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTAL 354

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 23/205 (11%)
Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
           L++  H G V  L ++     +S  T   D+T++VWD   G  T+ FEGH + V  L   
Sbjct: 156 LQLSGHDGGVWALKYAHGGILVSGST---DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 495 AKENIHFIFSISVDGKIKAWLYDS------LGARVDY--------DAPGLGCTRMAYSAN 540
             +NI +I + S D  +  W           G   DY        + P        + A+
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 541 GRRLFSCG---TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597
            R +   G    S   ++ L+ W+ ++        G     + +    +D  + + ++A 
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSG---HTDRIYSTIYDHERKRCISAS 329
Query: 598 DDHVIKIWDMNKVQLLTTIDAGGGL 622
            D  I+IWD+   +L  T+     L
Sbjct: 330 XDTTIRIWDLENGELXYTLQGHTAL 354

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 848 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 907
           S+ F+P D   +A G +D  I I++  + +++  L+GH + +  L +  + + LVS  GD
Sbjct: 128 SVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 908 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 938
             + +WD+     Q   +L   DGV T+A S
Sbjct: 187 RTVRIWDLRTG--QCSLTLSIEDGVTTVAVS 215

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 90/218 (41%), Gaps = 29/218 (13%)
Query: 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 458
           V  VV S DG           ++L+    G   R+ +    H  +V  +AFS   +QI  
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQI-- 487
Query: 459 ITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAW- 514
           ++   D+TIK+W+ +   + T S  G G   +  C     N     I S S D  +K W 
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 515 -----LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569
                L  +L     Y       + +A S +G    S G  K+G   L  W+ +EG  K+
Sbjct: 548 LSNCKLRSTLAGHTGY------VSTVAVSPDGSLCASGG--KDGVVLL--WDLAEG--KK 595
Query: 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607
            Y    L+ NSV      +     L A  +H IKIWD+
Sbjct: 596 LYS---LEANSVIHALCFSPNRYWLCAATEHGIKIWDL 630

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVIS 826
           L ++  ++     RL+   +G Q     + D+   +A    A S +  YL + +  G ++
Sbjct: 92  LPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAW-TLAFSPDSQYLATGTHVGKVN 147
Query: 827 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS 886
           ++ V + K   ++        S+A++P D   +A G  D  I I++  + +++  LEGH+
Sbjct: 148 IFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206
Query: 887 KRVTGLVFSDALNILVSSGGDAQIFVWDV 915
             +  L FS    +LV++  D  I ++DV
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDV 235

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 807 CFALSKNDA-YLFSASGGVISLYIVMT------FKTILTIMPPSPTATSLAFNPHDNNVI 859
           C+ L+ N A  L ++ GG   + I  T       K++L+      T   +A++P  N + 
Sbjct: 19  CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLA 77
Query: 860 AIGMDDST-ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916
           +   D +T I   N    E ++ LEGH   V  + ++ + N+L +   D  ++VW+VD
Sbjct: 78  SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1092
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.98
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.82
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.76
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.71
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.71
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.7
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.69
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.67
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.66
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.65
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.65
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.61
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.6
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.6
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.59
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.58
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.57
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.57
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.57
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.56
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.55
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.55
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.54
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.54
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.53
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.52
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.51
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.49
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.49
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.47
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.47
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.47
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.45
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.42
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.39
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.37
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.36
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.35
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.34
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.31
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.31
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.3
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.29
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.28
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.27
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.26
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.26
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.26
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.25
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.22
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.21
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.2
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.2
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.18
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.17
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.17
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.17
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.17
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.16
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.13
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.13
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.1
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.05
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.05
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.03
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.03
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.96
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.93
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.93
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.92
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.87
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.86
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.86
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.86
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.83
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.83
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.83
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.8
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.76
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.71
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.69
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.69
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.66
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.66
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.64
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.58
3ott_A	758	Two-component system sensor histidine kinase; beta	98.54
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.52
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.52
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.49
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.47
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.47
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.46
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.46
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.45
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.44
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.42
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.41
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.39
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.37
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.36
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.36
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.34
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.33
3ott_A	758	Two-component system sensor histidine kinase; beta	98.32
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.3
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.29
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.27
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.25
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.23
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.21
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.13
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.12
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.11
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.01
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.0
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.97
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.95
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.89
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.88
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.81
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.8
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.79
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.74
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.7
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.63
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.63
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.6
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.59
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.55
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.53
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.51
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.44
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.31
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.24
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.24
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.22
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.17
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	97.09
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.08
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.08
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.06
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.03
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.97
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.92
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.86
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.86
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.84
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.81
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.71
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.66
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.63
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.56
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.33
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.14
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.07
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.06
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.02
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.99
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.89
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.88
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.84
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.35
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	95.29
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.29
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.26
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.04
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.93
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.61
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.27
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.11
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	93.18
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.59
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.65
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	91.17
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	91.11
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.15
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.05
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	89.58
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	88.14
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	87.98
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	87.34
2j4b_A	138	TAF5, transcription initiation factor TFIID subuni	85.31
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	84.12
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	82.23
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	80.5

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.3e-69  Score=648.50  Aligned_cols=567  Identities=22%  Similarity=0.334  Sum_probs=490.7

Q ss_pred             eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001362          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      .+.|+||++.|+|++|||||+ +||+|+.|++|+|||. +++++..                   +.+|...|.+++|+|
T Consensus         9 ~~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fsp   67 (577)
T 2ymu_A            9 RNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSP   67 (577)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECT
T ss_pred             eeEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECC
Confidence            467999999999999999998 6899999999999995 6666654                   778999999999999


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001362          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  486 (1092)
                      ||++||+++.|++|+|||+. ++.+   ..+.+|...|.+++|+||++  +|++++.|+.+++|+.. ........+|..
T Consensus        68 dg~~las~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~  140 (577)
T 2ymu_A           68 DGQTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSS  140 (577)
T ss_dssp             TSSEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSS
T ss_pred             CCCEEEEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCC
Confidence            99999999999999999965 4433   37889999999999999999  89999999999999954 455667788999


Q ss_pred             CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001362          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1092)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1092)
                      .|..+.+.+  ++..+++++.++.+++|+... ........+...+..+.++|+++++++++.    ++.|++||. +++
T Consensus       141 ~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~  212 (577)
T 2ymu_A          141 SVWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQ  212 (577)
T ss_dssp             CEEEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSC
T ss_pred             ceeeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCc
Confidence            999998855  667899999999999998543 445566678889999999999999999986    667999995 677


Q ss_pred             EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE
Q 001362          567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI  646 (1092)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i  646 (1092)
                      .+..+.+|.   ..|.+++|+|+++++++++.|+.|++||. +++.+..+..+  ...|.+++|+|+++++++++.|+.|
T Consensus       213 ~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i  286 (577)
T 2ymu_A          213 LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTV  286 (577)
T ss_dssp             EEEEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEEecCC---CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEE
Confidence            888888887   89999999999999999999999999996 56777777655  3468999999999999999999999


Q ss_pred             EEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccc
Q 001362          647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL  726 (1092)
Q Consensus       647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~  726 (1092)
                      ++|+.. ++....+.+|...+.+++++                      |+++.+++++.|+.+++|+......   .. 
T Consensus       287 ~~w~~~-~~~~~~~~~h~~~v~~~~~~----------------------~~~~~l~t~~~d~~i~~w~~~~~~~---~~-  339 (577)
T 2ymu_A          287 KLWNRN-GQLLQTLTGHSSSVWGVAFS----------------------PDGQTIASASDDKTVKLWNRNGQHL---QT-  339 (577)
T ss_dssp             EEEETT-SCEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTSCEE---EE-
T ss_pred             EEEeCC-CcEEEEEecCCCCeEEEEEC----------------------CCCCEEEEEeCCCeEEEEeCCCCee---EE-
Confidence            999964 56778888999999999886                      7888999999999999999753221   11 


Q ss_pred             ccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001362          727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  806 (1092)
Q Consensus       727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~  806 (1092)
                         ..+|...+.+++|+|+++.+++++.+|.+++|+...                       ..+....    +|...|.
T Consensus       340 ---~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~~~~----~~~~~v~  389 (577)
T 2ymu_A          340 ---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-----------------------QLLQTLT----GHSSSVR  389 (577)
T ss_dssp             ---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-----------------------CEEEEEE----CCSSCEE
T ss_pred             ---EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----------------------CEEEEec----CCCCCeE
Confidence               134788999999999999999999999999998432                       1122211    3888999


Q ss_pred             EEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccc
Q 001362          807 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH  885 (1092)
Q Consensus       807 ~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h  885 (1092)
                      +++|+||+++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|
T Consensus       390 ~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~  466 (577)
T 2ymu_A          390 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGH  466 (577)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC
Confidence            999999999999998 799999995 5788889999999999999999 8999999999999999996 47788899999


Q ss_pred             cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEc
Q 001362          886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEA  964 (1092)
Q Consensus       886 ~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~  964 (1092)
                      ...|++++|+||+++|++++.|+.|++||... +     .++...+|..   .|.+++|+|||++|++ +.|+.|++||.
T Consensus       467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~~---~v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          467 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCSS---CEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCCC---CEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence            99999999999999999999999999999654 2     3444455554   7999999999999998 57899999996


Q ss_pred             CCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001362          965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus       965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd 1006 (1092)
                       +++++.. +.+|.+.|++++|+|||++|+|++.|++|++||
T Consensus       538 -~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          538 -NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             -TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence             5777776 568999999999999999999999999999997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.6e-67  Score=632.26  Aligned_cols=565  Identities=21%  Similarity=0.317  Sum_probs=484.9

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      .|.||++.|++++|||||++||+|+.|++|+|||. +++.++   ++.+|.+.|++++|+||++  +|++++.|++|+||
T Consensus        11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~---~l~gh~~~V~~l~fspdg~--~las~~~d~~i~vW   84 (577)
T 2ymu_A           11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ---TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLW   84 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEE---EEECCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred             EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEE---EEeCCCCCEEEEEECCCCC--EEEEEeCCCEEEEE
Confidence            48899999999999999999999999999999996 555444   7889999999999999999  89999999999999


Q ss_pred             ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001362          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      | .+++.+..+.+|...|.+++|++  ++.+|++++.|+.+++|+... ........+...+..+.++|++..++.++. 
T Consensus        85 d-~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-  159 (577)
T 2ymu_A           85 N-RNGQLLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD-  159 (577)
T ss_dssp             E-TTSCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTC-CEEEEECCCSSCEEEEEECTTSSCEEEEET-
T ss_pred             E-CCCCEEEEEECCCCCEEEEEECC--CCCEEEEEcCCCceeeccccc-ceeeeccCCCCceeeeeeecCCccceeccc-
Confidence            9 57889999999999999999955  778999999999999999654 445566777889999999999999998875 


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001362          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                         +..+.+|+.. .........+.   ..+..+.++|+++++++++.|+.|++||. +++.+..+..+.  ..|.+++|
T Consensus       160 ---~~~~~~~~~~-~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~--~~v~~~~~  229 (577)
T 2ymu_A          160 ---DKTVKLWNRN-GQLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVRGVAF  229 (577)
T ss_dssp             ---TSEEEEECTT-SCEEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS--SCEEEEEE
T ss_pred             ---ccceeccccc-eeeeeeccCCC---cceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCC--CCEEEEEE
Confidence               5568888864 44455556655   88999999999999999999999999996 567777777654  46899999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccccc
Q 001362          631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  710 (1092)
Q Consensus       631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i  710 (1092)
                      +|++++|++++.|+.|++|+.. ++.+..+.+|...+.+++++                      |+++.+++++.|+.+
T Consensus       230 s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~----------------------~d~~~l~~~~~d~~i  286 (577)
T 2ymu_A          230 SPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFR----------------------PDGQTIASASDDKTV  286 (577)
T ss_dssp             CTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCE
T ss_pred             CCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEc----------------------CCCCEEEEEeCCCEE
Confidence            9999999999999999999964 56788888999999988886                      788899999999999


Q ss_pred             ceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCc
Q 001362          711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ  790 (1092)
Q Consensus       711 ~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~  790 (1092)
                      ++|+.....   ..    ...+|...|.+++|+|+++.+++++.||.+++|+.....                       
T Consensus       287 ~~w~~~~~~---~~----~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-----------------------  336 (577)
T 2ymu_A          287 KLWNRNGQL---LQ----TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-----------------------  336 (577)
T ss_dssp             EEEETTSCE---EE----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----------------------
T ss_pred             EEEeCCCcE---EE----EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----------------------
Confidence            999964211   11    113588899999999999999999999999999854321                       


Q ss_pred             eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 001362          791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL  869 (1092)
Q Consensus       791 ~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~  869 (1092)
                      +...  .  +|...+.+++|+|+++++++++ ++.+++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|+
T Consensus       337 ~~~~--~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~  410 (577)
T 2ymu_A          337 LQTL--T--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVK  410 (577)
T ss_dssp             EEEE--C--CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEE
T ss_pred             eEEE--e--CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEE
Confidence            2221  1  3888999999999999999998 699999995 5788889999999999999999 899999999999999


Q ss_pred             EEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC
Q 001362          870 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1092)
Q Consensus       870 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  949 (1092)
                      +||. +++.+..+.+|...|++++|+||+++|++++.|+.|++||....      .+....+|..   .|.+++|+||++
T Consensus       411 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~~---~v~~~~~spd~~  480 (577)
T 2ymu_A          411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHSS---SVRGVAFSPDGQ  480 (577)
T ss_dssp             EECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCSS---CEEEEEECTTSC
T ss_pred             EEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCCC---CEEEEEEcCCCC
Confidence            9995 57888999999999999999999999999999999999997642      2333344443   799999999999


Q ss_pred             EEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCcc
Q 001362          950 RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1028 (1092)
Q Consensus       950 ~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1028 (1092)
                      +|++ +.|+.|++||. +++++.. +.+|...|++++|+|||++|++++.||.|++||. +++.+..+.        .|.
T Consensus       481 ~las~~~d~~i~iw~~-~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--------~h~  549 (577)
T 2ymu_A          481 TIASASDDKTVKLWNR-NGQLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--------GHS  549 (577)
T ss_dssp             EEEEEETTSEEEEEET-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--------CCS
T ss_pred             EEEEEeCCCEEEEEcC-CCCEEEE-EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--------CCC
Confidence            9999 57899999995 5777766 5689999999999999999999999999999996 577776665        245


Q ss_pred             CcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001362         1029 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus      1029 ~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
                      ..|.  +++|+| |+.+|++++.||+|++||
T Consensus       550 ~~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          550 SSVW--GVAFSP-DGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             SCEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             CCEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence            5565  678999 689999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.4e-67  Score=629.86  Aligned_cols=576  Identities=15%  Similarity=0.184  Sum_probs=477.0

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      .+++.+.+++|||||+ +||+++ +++|+|||+.+++....                   +.+|...|++++|||||++|
T Consensus        16 ~~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~l   74 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC   74 (611)
T ss_dssp             CCTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred             cccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEE
Confidence            4577899999999998 578876 57999999998876654                   77999999999999999999


Q ss_pred             EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC----CcEEEEECCCCceeEEEecCCcC
Q 001362          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      |+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+||++  .|++++.+    +.|++||  +++.+..+.+|...
T Consensus        75 asg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~  149 (611)
T 1nr0_A           75 ASGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARA  149 (611)
T ss_dssp             EEEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSC
T ss_pred             EEEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCC
Confidence            999999999999998665432 236789999999999999999  67777754    3566665  67778889999999


Q ss_pred             eEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001362          488 VYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1092)
Q Consensus       488 v~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1092)
                      |++++|+|  ++. .|++++.|++|++||..+.+....+..|...|.+++|+|||++|++++.    ++.|++||..+++
T Consensus       150 v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~  223 (611)
T 1nr0_A          150 MNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGT  223 (611)
T ss_dssp             EEEEEECS--SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCC
T ss_pred             ceEEEECC--CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCc
Confidence            99999976  444 6999999999999999888888889999999999999999999999986    5679999999999


Q ss_pred             EEEEEe-------eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCC-CCCceEEEccCCCEEE
Q 001362          567 IKRTYQ-------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLA  638 (1092)
Q Consensus       567 ~~~~~~-------~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~  638 (1092)
                      .+..+.       +|.   +.|.+++|+|++++|++++.|++|++||+.+++.+..+..+... ..+..+.|  ++..++
T Consensus       224 ~~~~~~~~~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~  298 (611)
T 1nr0_A          224 KTGVFEDDSLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALV  298 (611)
T ss_dssp             EEEECBCTTSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEE
T ss_pred             EeeeeccccccccccC---CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEE
Confidence            888874       455   89999999999999999999999999999999998888654221 12334455  788999


Q ss_pred             EEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccc
Q 001362          639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA  718 (1092)
Q Consensus       639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~  718 (1092)
                      +++.|+.+++|+...+.....+.+|...|.+++++                      |||+++++++.|+++++||+..+
T Consensus       299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s----------------------pdg~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSS----------------------ADGKTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTTC
T ss_pred             EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe----------------------CCCCEEEEEeCCCcEEEEECCCC
Confidence            99999999999999988888889999999999996                      78999999999999999998754


Q ss_pred             cCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCC
Q 001362          719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD  798 (1092)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~  798 (1092)
                      ....     ....+|...|.+++|++++ .+++++.|+.+++|+.........                 . .....   
T Consensus       357 ~~~~-----~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~-~~~~~---  409 (611)
T 1nr0_A          357 ISNR-----VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------K-AVANK---  409 (611)
T ss_dssp             CEEE-----CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------S-CCEEE---
T ss_pred             ceee-----ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------c-eeeee---
Confidence            3211     1123588899999999877 588999999999998764321000                 0 00001   


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001362          799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1092)
Q Consensus       799 ~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1092)
                        ......+++|+|+|+.++++.++.+++|+  .++ +..+. |...+.+++|+| |+++||+|+.|++|++||+.++..
T Consensus       410 --~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~  482 (611)
T 1nr0_A          410 --LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASV  482 (611)
T ss_dssp             --CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEE
T ss_pred             --cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCce
Confidence              23346789999999988888899999999  344 45554 778899999999 899999999999999999987653


Q ss_pred             --eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-E
Q 001362          879 --ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V  954 (1092)
Q Consensus       879 --~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~  954 (1092)
                        +.. .+|...|++++|||||++|++++.|++|++|++.+ ++...   .....+|..   .|.+++|+|||++||+ +
T Consensus       483 ~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~~---~V~~v~fspdg~~lasgs  555 (611)
T 1nr0_A          483 SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHTA---KVACVSWSPDNVRLATGS  555 (611)
T ss_dssp             EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCSS---CEEEEEECTTSSEEEEEE
T ss_pred             eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeeccc---ceeEEEECCCCCEEEEEE
Confidence              334 67999999999999999999999999999999987 33211   001222443   7999999999999999 6


Q ss_pred             eCCcEEEEEcCCceeee-eeccCC-CCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001362          955 HETHLAIYEAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       955 ~d~~i~lwd~~~~~~~~-~~~~~h-~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
                      .|++|++||+.++.... ....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus       556 ~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          556 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             CCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence            89999999998876332 446789 89999999999998 9999999999999974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.1e-65  Score=670.29  Aligned_cols=619  Identities=14%  Similarity=0.178  Sum_probs=513.6

Q ss_pred             eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001362          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      ....+.+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+..                   +.+|...|.+++|+
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s  666 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFS  666 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred             ceEEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEe
Confidence            4457889999999999999998 689999999999999999988765                   77899999999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001362          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1092)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  485 (1092)
                      |||++||+++.|+.|++||+.+++.+.   .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.
T Consensus       667 ~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~  743 (1249)
T 3sfz_A          667 SDDSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT  743 (1249)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred             cCCCEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence            999999999999999999999987655   67899999999999997655589999999999999999999999999999


Q ss_pred             cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------------CCCceEEEEEccCCCEEEEEecCCC
Q 001362          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------------PGLGCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------------~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      ..|.+++|++  ++.++++++.||.|++||+.+......+..             ....+.+++|+|+|+.+++++    
T Consensus       744 ~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----  817 (1249)
T 3sfz_A          744 NSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA----  817 (1249)
T ss_dssp             SCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE----
T ss_pred             CCEEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc----
Confidence            9999999965  678999999999999999988776554432             123678899999999999986    


Q ss_pred             CceeEEEEeCCCCeEEEEEe-eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001362          553 GESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                       ++.+.+||..++.....+. +|.   ..+.+++|+|++..+++++.||.|++||+.++..+..+..|.  ..|.+++|+
T Consensus       818 -~~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~s  891 (1249)
T 3sfz_A          818 -KNKVLLFDIHTSGLLAEIHTGHH---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFS  891 (1249)
T ss_dssp             -TTEEEEEETTTCCEEEEEECSSS---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEEC
T ss_pred             -CCcEEEEEecCCCceeEEcCCCC---CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceEEEEEC
Confidence             4469999999999888776 444   899999999999999999999999999999999998887664  469999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccc
Q 001362          632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1092)
Q Consensus       632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1092)
                      |+++++++++.||.|++|+..+.........  .......+                      .+++..++.....+.+.
T Consensus       892 pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~~~~~~~  947 (1249)
T 3sfz_A          892 PDGSSFLTASDDQTIRVWETKKVCKNSAIVL--KQEIDVVF----------------------QENETMVLAVDNIRGLQ  947 (1249)
T ss_dssp             TTSSEEEEEETTSCEEEEEHHHHHSCCSSSE--EEEEEEEE----------------------ETTEEEEEEEESSSSEE
T ss_pred             CCCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeEEE----------------------cCCCcEEEEecCCcceE
Confidence            9999999999999999999764322111110  00111111                      12334444444455555


Q ss_pred             eeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCce
Q 001362          712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF  791 (1092)
Q Consensus       712 lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~  791 (1092)
                      ++.......   .      ......+.+++++|+++.+++++.+|.+++|++....                      ..
T Consensus       948 ~~~~~~~~~---~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~----------------------~~  996 (1249)
T 3sfz_A          948 LIAGKTGQI---D------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR----------------------VF  996 (1249)
T ss_dssp             EEEESSCCE---E------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS----------------------CE
T ss_pred             EEecCcceE---E------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc----------------------ee
Confidence            555332111   0      1145679999999999999999999999999875432                      12


Q ss_pred             eeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 001362          792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI  870 (1092)
Q Consensus       792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i  870 (1092)
                      ..  +.  +|...|.+++|+|+|+++++++ |+.|++||+.+++... +..|...+.+++|+| ++ .+++++.||.|++
T Consensus       997 ~~--~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A          997 SS--GV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKV 1069 (1249)
T ss_dssp             EE--CC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEE
T ss_pred             ee--cc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEE
Confidence            22  11  4889999999999999999998 7999999999988764 557899999999999 55 6788999999999


Q ss_pred             EEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCE
Q 001362          871 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  950 (1092)
Q Consensus       871 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~  950 (1092)
                      ||+.+++.+..+.+|.+.|++++|+||+++|++++.||+|++||+.+++     .+....+|..   .|.+++|+|||++
T Consensus      1070 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~~ 1141 (1249)
T 3sfz_A         1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGIL 1141 (1249)
T ss_dssp             EETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSSE
T ss_pred             EECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eeeeeccCCC---cEEEEEECCCCCE
Confidence            9999999999999999999999999999999999999999999999865     4455556554   7999999999999


Q ss_pred             EEE-EeCCcEEEEEcCCceeeeee--------ccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccc
Q 001362          951 FLL-VHETHLAIYEAEELTCLKQW--------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021 (1092)
Q Consensus       951 la~-~~d~~i~lwd~~~~~~~~~~--------~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~ 1021 (1092)
                      |++ +.|+.|++||+.+++.+..+        ..+|.+.|++++|||||++|++++  |.|++||+.+++....+.    
T Consensus      1142 lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~---- 1215 (1249)
T 3sfz_A         1142 LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFY---- 1215 (1249)
T ss_dssp             EEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCC----
T ss_pred             EEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeee----
Confidence            999 57899999999999887664        256899999999999999999885  899999999998876554    


Q ss_pred             cCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001362         1022 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus      1022 ~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
                          .|...|.  +++|+| |+.+|++++.||.|++|++.+
T Consensus      1216 ----~~~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A         1216 ----TNGTNLK--KIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp             ----CSSCCCC--CCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred             ----ccCCccc--EEEECC-CCCEEEEecCCcEEEEEeecC
Confidence                1234454  577898 588999999999999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.5e-63  Score=601.57  Aligned_cols=573  Identities=11%  Similarity=0.114  Sum_probs=457.7

Q ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001362          393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1092)
Q Consensus       393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~  472 (1092)
                      ..+.+.+.+++|+|||++||+++ ++.|++|++.+++...   .+.+|...|++++|+|||+  +|++|+.|++|+|||+
T Consensus        15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~--~lasg~~d~~v~lWd~   88 (611)
T 1nr0_A           15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDT   88 (611)
T ss_dssp             CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEES
T ss_pred             CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe---EecCCCCceEEEEECCCCc--EEEEEeCCCCEEEeEC
Confidence            34678889999999999999997 4689999998876555   6889999999999999999  8999999999999998


Q ss_pred             CCCc--eeEEEecCCcCeEEEeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCC-EEE
Q 001362          473 VTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLF  545 (1092)
Q Consensus       473 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~  545 (1092)
                      .+++  ....+.+|.++|.+++|+|  ++++|++++.+    +.|++||  .+.....+.+|...|.+++|+|++. .|+
T Consensus        89 ~~~~~~~~~~~~~~~~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~  164 (611)
T 1nr0_A           89 TQTTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRII  164 (611)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred             CCCcceeeEeecccCCceEEEEECC--CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEE
Confidence            7554  4567889999999999965  67899988865    4677776  5556667888999999999999997 588


Q ss_pred             EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----C
Q 001362          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----G  620 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~  620 (1092)
                      +++.    ++.|++||..+++....+.+|.   ..|.+++|+|+++++++++.|++|++||..+++.+..+...     +
T Consensus       165 s~s~----D~~v~lwd~~~~~~~~~l~~H~---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~  237 (611)
T 1nr0_A          165 SGSD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA  237 (611)
T ss_dssp             EEET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCS
T ss_pred             EEeC----CCeEEEEECCCCeEeeeecccc---CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccc
Confidence            8876    6679999999999999999888   89999999999999999999999999999999988887421     3


Q ss_pred             CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeeccccc---CceeeeeecCCCccccccccCCceeecCCCCCC
Q 001362          621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS---DNLRKLSVNPISTVTGAGIANGSVSVNEDPKED  697 (1092)
Q Consensus       621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  697 (1092)
                      +...|.+++|+|++++|++++.|++|++||+.+++....+..+.   .....+.                        .+
T Consensus       238 h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~  293 (611)
T 1nr0_A          238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII------------------------WT  293 (611)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE------------------------EC
T ss_pred             cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE------------------------Ec
Confidence            44579999999999999999999999999999887776654321   1111111                        24


Q ss_pred             CccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccc
Q 001362          698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK  777 (1092)
Q Consensus       698 ~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~  777 (1092)
                      ++.+++++.|+.+++|+.......      ....+|...|.+++|+|+|+.|++++.|+.|++|++...           
T Consensus       294 ~~~l~s~s~d~~i~~~~~~~~~~~------~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~-----------  356 (611)
T 1nr0_A          294 KQALVSISANGFINFVNPELGSID------QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG-----------  356 (611)
T ss_dssp             SSCEEEEETTCCEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----------
T ss_pred             CCEEEEEeCCCcEEEEeCCCCCcc------eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC-----------
Confidence            778999999999999997643211      112358899999999999999999999999999987543           


Q ss_pred             cCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEE---ecCCCCCeEEEEEcCC
Q 001362          778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT---IMPPSPTATSLAFNPH  854 (1092)
Q Consensus       778 ~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~  854 (1092)
                                 .+...  + ..+|...|.+++|++++.++..+.|+.+++|+..++.....   .........+++|+| 
T Consensus       357 -----------~~~~~--~-~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-  421 (611)
T 1nr0_A          357 -----------ISNRV--F-PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-  421 (611)
T ss_dssp             -----------CEEEC--S-SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-
T ss_pred             -----------ceeee--c-ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-
Confidence                       11111  1 12488999999999888655555589999999876543210   011234567899999 


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC
Q 001362          855 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT  934 (1092)
Q Consensus       855 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  934 (1092)
                      ++.+++++ .++.+++|+  .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++....   +.. .+|..
T Consensus       422 dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~~  492 (611)
T 1nr0_A          422 DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHPA  492 (611)
T ss_dssp             TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECSS
T ss_pred             CCcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCCC
Confidence            78777776 467899998  344 55555 88899999999999999999999999999998754322   122 23333


Q ss_pred             CCCCceEEEEecCCCEEEE-EeCCcEEEEEcCC-ceeeee-eccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001362          935 LAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE-LTCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       935 ~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~-~~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
                         .|.+++|||||++|++ +.|++|++||+.+ ++.... ...+|...|.+++|||||++|++++.|++|++|++.++.
T Consensus       493 ---~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          493 ---EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             ---CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             ---ceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence               7999999999999999 6889999999987 666554 344599999999999999999999999999999999875


Q ss_pred             eEE-eeccccccCCCCc-cCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001362         1012 VQC-RILSTAYLRPTTS-CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1012 ~~~-~~~~~~~~~~~~~-~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      ... ...       ..| ...|.  +++|+| |+. |++++.||+|++|+++
T Consensus       570 ~~~~~~~-------~~h~~~~v~--~v~fs~-d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          570 DHPIIIK-------GAHAMSSVN--SVIWLN-ETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             SCCEEET-------TSSTTSCEE--EEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred             cccchhh-------ccCcccCee--EEEEcC-CCE-EEEecCCCCEEEEecc
Confidence            321 111       113 34455  678888 455 9999999999999983

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.2e-60  Score=581.44  Aligned_cols=559  Identities=11%  Similarity=0.155  Sum_probs=484.6

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCC----CeeEEeeeeeeecccccceeeEeeecCCCCc-EEEEEEC
Q 001362          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWS  405 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~----~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~-V~~l~~s  405 (1092)
                      ..|.+.|++++|||||+ +||+++ ++.|+|||+.++    +....                   +.+|... |.+++|+
T Consensus        15 ~~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~s   73 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFS   73 (615)
T ss_dssp             CCCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEEC
T ss_pred             CCccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEEC
Confidence            36888999999999999 577776 789999999988    65554                   7789999 9999999


Q ss_pred             C--CCCEEEEEeCCCEEEEEEccCCC-----cccceEEEcccccceeEEEEecCCCcEEEEEEeCC----CcEEEEECCC
Q 001362          406 P--DGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVT  474 (1092)
Q Consensus       406 p--dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~  474 (1092)
                      |  |+++||+++.||.|++||+.++.     .......+.+|...|.+++|+|+++  ++++++.+    +.|++||  +
T Consensus        74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~  149 (615)
T 1pgu_A           74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--S  149 (615)
T ss_dssp             SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--T
T ss_pred             cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--C
Confidence            9  99999999999999999997651     1123336778999999999999999  78888877    6788887  7


Q ss_pred             CceeEEEecCCcCeEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCceEEecCCCC---ceEEEEEccC-CCEEEEEec
Q 001362          475 GSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGT  549 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~i~~~~~s~d-g~~l~~~~~  549 (1092)
                      ++.+..+.+|...|.+++|++  ++. ++++++.||.|++||+.+.+....+..+..   .|.+++|+|+ ++++++++.
T Consensus       150 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (615)
T 1pgu_A          150 GNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS  227 (615)
T ss_dssp             CCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred             CCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence            788999999999999999966  444 899999999999999999888888888888   9999999999 999999986


Q ss_pred             CCCCceeEEEEeCCCCeEEEEE-e---eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC--CC
Q 001362          550 SKEGESFLVEWNESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LP  623 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~  623 (1092)
                          ++.|++||+.+++.+..+ .   .|.   ..|.+++|+ ++.++++++.|+.|++||+.+++.+..+..+..  ..
T Consensus       228 ----dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  299 (615)
T 1pgu_A          228 ----DRKISCFDGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN  299 (615)
T ss_dssp             ----TCCEEEEETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred             ----CCeEEEEECCCCCEeEEecccccccC---CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence                566999999999999888 5   566   899999999 999999999999999999999999988876521  13


Q ss_pred             CCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001362          624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1092)
Q Consensus       624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1092)
                      .+.++.|+ +++++++++.||.|++|++.+++.+..+.+|...+.++++ |.                         +++
T Consensus       300 ~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-------------------------l~~  352 (615)
T 1pgu_A          300 QQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-------------------------LIS  352 (615)
T ss_dssp             CEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-------------------------TEE
T ss_pred             ceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-------------------------cEE
Confidence            45677775 8999999999999999999999999999999999998888 52                         788


Q ss_pred             eccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccc
Q 001362          704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY  783 (1092)
Q Consensus       704 ~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w  783 (1092)
                      ++.|+.+++|++.        .+.   ..|...|.+++| +++..+++++.|+.+++|++....                
T Consensus       353 ~~~dg~i~~w~~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~----------------  404 (615)
T 1pgu_A          353 GSYDGRIMEWSSS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHE----------------  404 (615)
T ss_dssp             EETTSCEEETTTT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEE----------------
T ss_pred             ECCCCeEEEEEch--------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCc----------------
Confidence            9999999999976        111   458899999999 667789999999999999875431                


Q ss_pred             cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 001362          784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM  863 (1092)
Q Consensus       784 ~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~  863 (1092)
                                       ....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.+++|+   +++|++++
T Consensus       405 -----------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~  463 (615)
T 1pgu_A          405 -----------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGL  463 (615)
T ss_dssp             -----------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEE
T ss_pred             -----------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEee
Confidence                             1125788999999999999888999999999999988887 88899999998   67999999


Q ss_pred             C-CCcEEEEEcCCceee-EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC-CcCCCCCce
Q 001362          864 D-DSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSET  940 (1092)
Q Consensus       864 ~-dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~  940 (1092)
                      . ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++     .+....+ |..   .|.
T Consensus       464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~h~~---~v~  535 (615)
T 1pgu_A          464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-----VKTSRWAFRTS---KIN  535 (615)
T ss_dssp             TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEECCSCCCSS---CEE
T ss_pred             cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc-----ceeEeecCCCC---cee
Confidence            9 999999999988766 7788899999999999999999999999999999999865     3344444 443   799


Q ss_pred             EEEEec----------CCCEEEE-EeCCcEEEEEcCCc-eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001362          941 HIQFHK----------DQTRFLL-VHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       941 ~l~~s~----------dg~~la~-~~d~~i~lwd~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
                      +++|+|          ++++|++ +.|+.|++||+.++ +++.. +.+|...|++++|+|||+ |++++.||+|++|++.
T Consensus       536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred             EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh-hhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence            999999          9999999 57899999999988 55554 678999999999999999 9999999999999987


Q ss_pred             CC
Q 001362         1009 NL 1010 (1092)
Q Consensus      1009 ~~ 1010 (1092)
                      ++
T Consensus       614 ~~  615 (615)
T 1pgu_A          614 LE  615 (615)
T ss_dssp             --
T ss_pred             cC
Confidence            53

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.1e-58  Score=607.92  Aligned_cols=587  Identities=16%  Similarity=0.187  Sum_probs=498.4

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|.+.|.+++|||||++||+|+.||+|++||+.+++.+.   .+.+|.+.|.+++|+|+++  ++++++.|++|++||
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vwd  685 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIWD  685 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEEE
Confidence            77899999999999999999999999999999999987555   6889999999999999999  899999999999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      +.+++.+..+.+|...|.+++|++..++.++++++.||.|++||+.++.....+..|...|.+++|+|+++++++++.  
T Consensus       686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~--  763 (1249)
T 3sfz_A          686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA--  763 (1249)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES--
T ss_pred             CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC--
Confidence            999999999999999999999988778889999999999999999999999999999999999999999999999986  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeecc----------ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC
Q 001362          552 EGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG  621 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  621 (1092)
                        ++.|++||+.+++....+....          .....+.+++|+|++..+++++ ++.+.+||..++.....+... +
T Consensus       764 --dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~-~  839 (1249)
T 3sfz_A          764 --DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG-H  839 (1249)
T ss_dssp             --SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS-S
T ss_pred             --CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC-C
Confidence              6679999999998877665321          0123688899999999999987 689999999999988877632 2


Q ss_pred             CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001362          622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1092)
Q Consensus       622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1092)
                      ...+.+++|+|+++++++++.||.|++|+..++.....+.+|...|.+++|+                      |+++.+
T Consensus       840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------------------pdg~~l  897 (1249)
T 3sfz_A          840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS----------------------PDGSSF  897 (1249)
T ss_dssp             SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEE
T ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC----------------------CCCCEE
Confidence            3568999999999999999999999999999999999999999999999996                      788899


Q ss_pred             eeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCc
Q 001362          702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  781 (1092)
Q Consensus       702 ~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~  781 (1092)
                      ++++.|+.+++|++.........        .......+.+.+++..+++....+.+.++.....               
T Consensus       898 ~s~s~dg~v~vw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  954 (1249)
T 3sfz_A          898 LTASDDQTIRVWETKKVCKNSAI--------VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG---------------  954 (1249)
T ss_dssp             EEEETTSCEEEEEHHHHHSCCSS--------SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC---------------
T ss_pred             EEEeCCCeEEEEEccccceeeee--------cccceeeEEEcCCCcEEEEecCCcceEEEecCcc---------------
Confidence            99999999999997643222111        1223345667777777777777777777654322               


Q ss_pred             cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001362          782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA  860 (1092)
Q Consensus       782 ~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la  860 (1092)
                             .....       +...+.+++|+|+++++++++ +|.|++||+.+++....+.+|...|++++|+| ++++|+
T Consensus       955 -------~~~~~-------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~ 1019 (1249)
T 3sfz_A          955 -------QIDYL-------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLI 1019 (1249)
T ss_dssp             -------CEEEE-------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEE
T ss_pred             -------eEEEc-------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEE
Confidence                   11111       456799999999999999998 69999999999999999999999999999999 899999


Q ss_pred             EEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001362          861 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET  940 (1092)
Q Consensus       861 sg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  940 (1092)
                      +++.||.|++||+.+++.. .+.+|...|.+++|+|++ .+++++.||.|++||+.+++..     ....++..   .|.
T Consensus      1020 s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~~~~~~~---~v~ 1089 (1249)
T 3sfz_A         1020 SSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIE-----RDFTCHQG---TVL 1089 (1249)
T ss_dssp             EECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCC-----EEEECCSS---CCC
T ss_pred             EEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCcee-----EEEcccCC---cEE
Confidence            9999999999999998876 456799999999999975 6788999999999999987633     33334443   799


Q ss_pred             EEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccc
Q 001362          941 HIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019 (1092)
Q Consensus       941 ~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~ 1019 (1092)
                      +++|+||++++++ +.|++|++||+.+++++.. ..+|...|++++|||||++|++++.||+|++||+.+++....+.+.
T Consensus      1090 ~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~ 1168 (1249)
T 3sfz_A         1090 SCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1168 (1249)
T ss_dssp             CEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCC
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCcceeee-eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccc
Confidence            9999999999998 5889999999999988876 5689999999999999999999999999999999999887665322


Q ss_pred             cccCC-CCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001362         1020 AYLRP-TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus      1020 ~~~~~-~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
                      ..... ..|...|.  +++|+| |+.++++++  |.|++||+.....
T Consensus      1169 ~~~~~~~~~~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A         1169 SVEEGTATHGGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp             C-------CCSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred             cccccccccCceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence            21111 12445555  788999 578888885  9999999976553

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-57  Score=567.65  Aligned_cols=593  Identities=11%  Similarity=0.092  Sum_probs=450.7

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      ....||.+.|++++|+|+|+ +||+|+.||+|+|||..+++...                    ...|...|.+++|+| 
T Consensus        11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp-   68 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK-   68 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred             ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence            33459999999999999998 79999999999999988766543                    224788999999999 


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee---------
Q 001362          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---------  478 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~---------  478 (1092)
                      |++|++++.|++|++||+.+++.+.   .+. |.+.|++++|+|+++  ++++|+.||+|++||++++++.         
T Consensus        69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~  142 (902)
T 2oaj_A           69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK  142 (902)
T ss_dssp             TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred             CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence            8899999999999999999987665   443 678899999999999  8999999999999999988764         


Q ss_pred             --EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------------------CCceEEEEEc
Q 001362          479 --YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYS  538 (1092)
Q Consensus       479 --~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------------------~~~i~~~~~s  538 (1092)
                        ..+.+|.++|.+++|+|. ++..+++|+.||.| +||+++.+....+..+                  ...|.+++|+
T Consensus       143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs  220 (902)
T 2oaj_A          143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH  220 (902)
T ss_dssp             HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred             cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence              234678999999999764 34689999999999 9999998877766654                  3579999999


Q ss_pred             cCCCEEEEEecCCCCceeEEEEeCCCCeEEEE--Ee---ecc----------ccCCceEEEEEc----CCC-CEEEEEeC
Q 001362          539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFD----TAK-DQILAAGD  598 (1092)
Q Consensus       539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~~----------~~~~~v~~~~~~----p~~-~~l~~~s~  598 (1092)
                      |+|++|++++.    ++.|++||..+++.+..  +.   +|.          .+...|.+++|+    |++ ..+++|+.
T Consensus       221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~  296 (902)
T 2oaj_A          221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS  296 (902)
T ss_dssp             TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred             CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence            99999999986    56699999999987654  21   121          123579999995    443 45666766


Q ss_pred             C-----CcEEEEECC------------------CCceEEEEeCCCCCCCCceEEEcc----------CCCEEEEEeCCCe
Q 001362          599 D-----HVIKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENR  645 (1092)
Q Consensus       599 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~~~~~dg~  645 (1092)
                      +     +.+.+|++.                  +++....+... +...+..+++.+          +...+++++.||.
T Consensus       297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~  375 (902)
T 2oaj_A          297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE  375 (902)
T ss_dssp             STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred             CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence            5     378899842                  22334444321 123567777755          3457899999999


Q ss_pred             EEEEECCCCceeee-------cccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccc
Q 001362          646 IKILETPESNSVDA-------AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA  718 (1092)
Q Consensus       646 i~iw~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~  718 (1092)
                      |++|++.++.....       +..|...|+++++++                                 ...++|+....
T Consensus       376 l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~---------------------------------~~~~~w~~~~~  422 (902)
T 2oaj_A          376 IETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAAS---------------------------------VPNKLWLGALS  422 (902)
T ss_dssp             EEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEE---------------------------------EEHHHHHHHHH
T ss_pred             EEEEECCCCCcccccccCCCcccccCCCeeEEEEEE---------------------------------cCHHHHHHHHh
Confidence            99999987744322       334455666666542                                 12244553221


Q ss_pred             cCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecC--
Q 001362          719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT--  796 (1092)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l--  796 (1092)
                      .....   ..+..+|...+..++|+|+++.+++++.|++|++||+.......         ..         .....+  
T Consensus       423 ~~~~~---~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~---------~~~~~l~~  481 (902)
T 2oaj_A          423 AAQNK---DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NA---------SFEVNLSR  481 (902)
T ss_dssp             TTBCC---CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TB---------CEEEEHHH
T ss_pred             cccCC---CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------Cc---------eEEeechh
Confidence            11111   11234577778889999999999999999999999987642100         00         000000  


Q ss_pred             -CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCc-----------------------------------------
Q 001362          797 -TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTF-----------------------------------------  833 (1092)
Q Consensus       797 -~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~-----------------------------------------  833 (1092)
                       ...+|...|.+++|+|||++||+++ ||+|+|||+.++                                         
T Consensus       482 ~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (902)
T 2oaj_A          482 TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGV  561 (902)
T ss_dssp             HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTC
T ss_pred             hcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCC
Confidence             0114888999999999999999998 799999999866                                         


Q ss_pred             ----eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeE-----eec-cccCCeEEEEEc-----CCC
Q 001362          834 ----KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL  898 (1092)
Q Consensus       834 ----~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----pdg  898 (1092)
                          +++..+.+|.+.|++++||| || +||+|+.|++|+|||+.++..+.     .+. +|.+.|++++||     |||
T Consensus       562 ~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg  639 (902)
T 2oaj_A          562 RQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDG  639 (902)
T ss_dssp             SEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSS
T ss_pred             CCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCC
Confidence                24677889999999999999 88 99999999999999999877653     343 899999999999     886


Q ss_pred             ---CEEEEEeCCCcEEEEEc---CCCceeeeeeeecCCCCcC--CCCCceEEE-Ee----------------------cC
Q 001362          899 ---NILVSSGGDAQIFVWDV---DGWGIQTCRSLQTPDGVMT--LAPSETHIQ-FH----------------------KD  947 (1092)
Q Consensus       899 ---~~l~s~s~Dg~i~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~l~-~s----------------------~d  947 (1092)
                         ++|++++.|++|++||+   .+++...     .+.++..  ..+.|.+++ |+                      ++
T Consensus       640 ~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~  714 (902)
T 2oaj_A          640 YSSILMVCGTDMGEVITYKILPASGGKFDV-----QLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIP  714 (902)
T ss_dssp             SEEEEEEEEETTSEEEEEEEEECGGGCEEE-----EEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCC
T ss_pred             CcceEEEEEecCCcEEEEEEecCCCCcEEE-----EecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCC
Confidence               89999999999999999   5555322     2222211  113566666 66                      45


Q ss_pred             CCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEE---E------EecCCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001362          948 QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       948 g~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l---~------fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      +.+|++ .+..|+||++.++++.+.. ..|...+.++   .      |+++|..|++++.||+|++|++.+++.+..+..
T Consensus       715 ~~~l~~-~~~~ir~~~~~~~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~  792 (902)
T 2oaj_A          715 GIVLIT-GFDDIRLITLGKSKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHI  792 (902)
T ss_dssp             EEEEEE-CSSEEEEECTTCCCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEE-eccceEEEeCccccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccC
Confidence            555444 4889999999999998875 4565666666   5      789999999999999999999999999988874

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.3e-57  Score=550.15  Aligned_cols=556  Identities=11%  Similarity=0.109  Sum_probs=468.2

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC----CcccceEEEcccccc-eeEEEEec--CCCcEEEEEEeCC
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDD  464 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~-v~~~~~s~--d~~~l~l~s~~~d  464 (1092)
                      ...|.+.|.+++|+|||++||+++ ++.|++||+.++    +...   .+.+|... |++++|+|  +++  +|++++.|
T Consensus        14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~d   87 (615)
T 1pgu_A           14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDES   87 (615)
T ss_dssp             CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETT
T ss_pred             CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCC
Confidence            346889999999999999999998 789999999987    4444   78899999 99999999  999  89999999


Q ss_pred             CcEEEEECCCC--------ceeEEEecCCcCeEEEeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCce
Q 001362          465 KTIKVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGC  532 (1092)
Q Consensus       465 ~~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~i  532 (1092)
                      |.|++||+.++        +.+..+..|..+|.+++|++  ++.+|++++.+    +.|++||  ..+....+..|...|
T Consensus        88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v  163 (615)
T 1pgu_A           88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRI  163 (615)
T ss_dssp             SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCE
T ss_pred             CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccE
Confidence            99999999855        77788899999999999964  67899999988    6788886  666777888899999


Q ss_pred             EEEEEccCCC-EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC---ceEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 001362          533 TRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       533 ~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~p~-~~~l~~~s~dg~i~iwd~  607 (1092)
                      .+++|+|+++ .+++++.    ++.|++||..+++.+..+.+|.   .   .|.+++|+|+ ++++++++.||.|++||+
T Consensus       164 ~~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~  236 (615)
T 1pgu_A          164 NACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG  236 (615)
T ss_dssp             EEEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred             EEEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence            9999999998 6888775    6779999999999999999887   6   8999999999 999999999999999999


Q ss_pred             CCCceEEEEeCC--CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeeccccc----CceeeeeecCCCccccc
Q 001362          608 NKVQLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVTGA  681 (1092)
Q Consensus       608 ~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~  681 (1092)
                      .+++.+..+...  .+...|.+++|+ +++++++++.|+.|++||+.+++.+..+..+.    ..+.++.+         
T Consensus       237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---------  306 (615)
T 1pgu_A          237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA---------  306 (615)
T ss_dssp             TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE---------
T ss_pred             CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe---------
Confidence            999999888221  223568999999 99999999999999999999998887776653    33333333         


Q ss_pred             cccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEE
Q 001362          682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW  761 (1092)
Q Consensus       682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw  761 (1092)
                                    ++++.+++++.++.+++|++........      ..+|...|.+++| |+   +++++.||.+++|
T Consensus       307 --------------~~~~~l~~~~~~g~i~~~d~~~~~~~~~------~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w  362 (615)
T 1pgu_A          307 --------------TGNGRIISLSLDGTLNFYELGHDEVLKT------ISGHNKGITALTV-NP---LISGSYDGRIMEW  362 (615)
T ss_dssp             --------------EETTEEEEEETTSCEEEEETTEEEEEEE------ECCCSSCEEEEET-TT---TEEEETTSCEEET
T ss_pred             --------------CCCCeEEEEECCCCEEEEECCCCcEEEE------EeCCCCCEEEEEe-cC---cEEECCCCeEEEE
Confidence                          3688899999999999999875332221      1348899999999 88   9999999999998


Q ss_pred             eecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEec
Q 001362          762 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIM  840 (1092)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~  840 (1092)
                      ++.                         ++.      .+|...|.+++| +++..+++++ |+.+++||+.+++...   
T Consensus       363 ~~~-------------------------~~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~---  407 (615)
T 1pgu_A          363 SSS-------------------------SMH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS---  407 (615)
T ss_dssp             TTT-------------------------EEE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS---
T ss_pred             Ech-------------------------hhc------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC---
Confidence            753                         011      148899999999 5566666666 7999999998765433   


Q ss_pred             CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCc
Q 001362          841 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWG  919 (1092)
Q Consensus       841 ~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iwd~~~~~  919 (1092)
                          .+.+++++| ++.+++++ .++.+.+|++.+++.+..+. |...+.+++|+  +++|++++. |+.|++||+.+++
T Consensus       408 ----~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~  478 (615)
T 1pgu_A          408 ----QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE  478 (615)
T ss_dssp             ----CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEE
T ss_pred             ----CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcc
Confidence                678999999 88888877 88999999999999888887 89999999999  889999999 9999999999854


Q ss_pred             eeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEec----------
Q 001362          920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC----------  988 (1092)
Q Consensus       920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~----------  988 (1092)
                      ...    ....++..   .|.+++|+|+|++|++ +.|+.|++||+.+++.+..+...|...|++++|+|          
T Consensus       479 ~~~----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~  551 (615)
T 1pgu_A          479 VSF----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEI  551 (615)
T ss_dssp             EEE----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CC
T ss_pred             ccc----cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccccc
Confidence            221    34444443   7999999999999999 57899999999999998875544999999999999          


Q ss_pred             CCCEEEEEECCCcEEEEEcCCC-ceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001362          989 DCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus       989 dg~~l~t~~~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      |+++|++++.||+|++||+.++ +.+..+.        .|...|.  +++|+| ++. |++++.||.|++|++.
T Consensus       552 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~h~~~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          552 EEDLVATGSLDTNIFIYSVKRPMKIIKALN--------AHKDGVN--NLLWET-PST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             SCCEEEEEETTSCEEEEESSCTTCCEEETT--------SSTTCEE--EEEEEE-TTE-EEEEETTSCEEEEEEC
T ss_pred             CCCEEEEEcCCCcEEEEECCCCceechhhh--------cCccceE--EEEEcC-CCC-eEEecCCceEEEEeee
Confidence            9999999999999999999998 5665544        2445555  678888 467 9999999999999985

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-56  Score=555.04  Aligned_cols=597  Identities=9%  Similarity=0.040  Sum_probs=438.2

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      ..+|...|.+++|+|+|++||+|+.||+|+||+..+++...    ...|...|.+++|+| |+  +|++++.|++|++||
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd   85 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS   85 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence            55899999999999999999999999999999988764332    235788999999999 77  799999999999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce-----------EEecCCCCceEEEEEccC
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN  540 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~i~~~~~s~d  540 (1092)
                      +.+++++..+. |...|++++|++  ++.+|++|+.||.|++||+++....           .....|..+|.+++|+|+
T Consensus        86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~  162 (902)
T 2oaj_A           86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR  162 (902)
T ss_dssp             TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred             CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence            99999999886 778999999955  6789999999999999999877643           123557789999999996


Q ss_pred             C-CEEEEEecCCCCceeEEEEeCCCCeEEEEEeec---------------cccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001362          541 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI  604 (1092)
Q Consensus       541 g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~p~~~~l~~~s~dg~i~i  604 (1092)
                      + ..+++++.    ++.| +||+.+++.+..+..+               ..|...|.+++|+|++.+|++++.||+|++
T Consensus       163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l  237 (902)
T 2oaj_A          163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF  237 (902)
T ss_dssp             EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence            4 67777654    6679 9999999999888766               112367999999999999999999999999


Q ss_pred             EECCCCceEEEEeC-----CC-----------CCCCCceEEEcc----CC-CEEEEEeCC-----CeEEEEECCC-----
Q 001362          605 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFNK----NG-TLLAVIANE-----NRIKILETPE-----  653 (1092)
Q Consensus       605 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s~----~~-~~l~~~~~d-----g~i~iw~~~~-----  653 (1092)
                      ||+.+++.+.....     +.           +...|.+++|++    ++ .++++++.+     +.+.+|++..     
T Consensus       238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~  317 (902)
T 2oaj_A          238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS  317 (902)
T ss_dssp             EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred             EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence            99999988764221     21           123588999964    43 567777665     3788888431     


Q ss_pred             -------------Cceeeecc-cccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc
Q 001362          654 -------------SNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  719 (1092)
Q Consensus       654 -------------~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~  719 (1092)
                                   .+....+. .+...+..+.+.+.......+            ..++..+++++.|+++++|++..+.
T Consensus       318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g------------~~d~~~l~~~s~dg~l~~~~~~~g~  385 (902)
T 2oaj_A          318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAG------------CHNPGLILLILGNGEIETMLYPSGI  385 (902)
T ss_dssp             GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHH------------TBSCSEEEEEETTSCEEEEETTTCC
T ss_pred             ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCC------------CCCceeEEEEcCCCcEEEEECCCCC
Confidence                         11122222 234455555544321110000            1345578888899999999985332


Q ss_pred             Cccc-cccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCC
Q 001362          720 PSEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD  798 (1092)
Q Consensus       720 ~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~  798 (1092)
                      .... .........|...|.++++++...           .+|+.....                  . +...  ..+. 
T Consensus       386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~------------------~-~~~~--~~l~-  432 (902)
T 2oaj_A          386 FTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSA------------------A-QNKD--YLLK-  432 (902)
T ss_dssp             EECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHT------------------T-BCCC--CSCC-
T ss_pred             cccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhc------------------c-cCCC--Cccc-
Confidence            1111 001111223567888888865432           234321100                  0 0000  0122 


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee--EEe----c-----CCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001362          799 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTI----M-----PPSPTATSLAFNPHDNNVIAIGMDDS  866 (1092)
Q Consensus       799 ~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~--~~~----~-----~~~~~i~~l~~s~~d~~~lasg~~dg  866 (1092)
                       +|...+.+++|+||+++|++++ |++|++||+.++...  ..+    .     +|...|.+++|+| |+++||+|+.||
T Consensus       433 -G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~Dg  510 (902)
T 2oaj_A          433 -GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETG  510 (902)
T ss_dssp             -CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTS
T ss_pred             -CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCc
Confidence             4777788899999999999998 899999999887421  111    1     7888999999999 999999999999


Q ss_pred             cEEEEEcCCc---------------------------------------------eeeEeeccccCCeEEEEEcCCCCEE
Q 001362          867 TILIYNARSS---------------------------------------------EVISKLEGHSKRVTGLVFSDALNIL  901 (1092)
Q Consensus       867 ~v~iwd~~~~---------------------------------------------~~~~~l~~h~~~V~~l~~spdg~~l  901 (1092)
                      +|+||++.++                                             +++..+.+|.+.|++++||||| +|
T Consensus       511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l  589 (902)
T 2oaj_A          511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV  589 (902)
T ss_dssp             CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred             EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EE
Confidence            9999999876                                             2467888999999999999999 99


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeeeeecCC-CCcCCCCCceEEEEe-----cCC---CEEEE-EeCCcEEEEEc---CCce
Q 001362          902 VSSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLL-VHETHLAIYEA---EELT  968 (1092)
Q Consensus       902 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~s-----~dg---~~la~-~~d~~i~lwd~---~~~~  968 (1092)
                      |+|+.|++|+|||+.++.......+.... +|..   .|++++||     |||   ++|++ +.|++|++||+   .+|+
T Consensus       590 Asgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~  666 (902)
T 2oaj_A          590 GIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK  666 (902)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred             EEEeCCCcEEEEECCCCeEEEEeehhHhcccccc---ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence            99999999999999886543221223343 5554   89999999     886   78888 68899999999   7888


Q ss_pred             eeeeeccCC-----CCCEEEEE-Ee----------------------cCCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001362          969 CLKQWFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus       969 ~~~~~~~~h-----~~~v~~l~-fs----------------------~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
                      +...+ .+|     .++|..++ |+                      ++|..|+++  +..|+||++.+++.......  
T Consensus       667 ~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~--  741 (902)
T 2oaj_A          667 FDVQL-MDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFK--  741 (902)
T ss_dssp             EEEEE-EEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECS--
T ss_pred             EEEEe-cCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcc--
Confidence            77663 344     47787777 76                      455555443  77899999999988765531  


Q ss_pred             ccCCCCccCcccceE-EE------ECCCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 001362         1021 YLRPTTSCLHVYPHA-IA------AHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1066 (1092)
Q Consensus      1021 ~~~~~~~~~~v~~~~-~~------~~p~~~~~l~~~~~dg~v~~w~~~~~~~~ 1066 (1092)
                            |...+..++ +.      |++ ++..|++++.||+|++|++++.+..
T Consensus       742 ------~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~  787 (902)
T 2oaj_A          742 ------YPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQ  787 (902)
T ss_dssp             ------SCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEE
T ss_pred             ------cceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHH
Confidence                  111122221 24      566 4789999999999999999887754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=9.2e-48  Score=484.10  Aligned_cols=559  Identities=14%  Similarity=0.175  Sum_probs=428.4

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ...+++.+|++.|++++|||+|+ +||+|+.||.|+|||+.+++.+..                   +.+|...|.+++|
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~   63 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKF   63 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEE
Confidence            34578899999999999999998 689999999999999999987765                   6689999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEec
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG  483 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~  483 (1092)
                      +|+|++||+++.||.|++||+.+++.+.   .+.+|.+.|++++|+|+++  +|++++.||.|++||+.++ .....+.+
T Consensus        64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~  138 (814)
T 3mkq_A           64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG  138 (814)
T ss_dssp             EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred             eCCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence            9999999999999999999999987555   6788999999999999999  7999999999999999987 67788899


Q ss_pred             CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEcc--CCCEEEEEecCCCCceeEEEE
Q 001362          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                      |...|.+++|+|. ++..+++++.||.|++||+........+..+. ..+..++|+|  ++.++++++.    ++.|++|
T Consensus       139 ~~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~  213 (814)
T 3mkq_A          139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW  213 (814)
T ss_dssp             CSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEE
T ss_pred             CCCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEE
Confidence            9999999999652 56799999999999999998888777666554 7899999999  9999999875    6679999


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCE-EEE
Q 001362          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL-LAV  639 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~~  639 (1092)
                      |..+++.+..+.+|.   ..|.+++|+|+++++++++.||.|++||+.+++.+..+..+.  ..+.+++|+|++.. +++
T Consensus       214 d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~  288 (814)
T 3mkq_A          214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA  288 (814)
T ss_dssp             ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS--SSEEEEEECTTCGGGEEE
T ss_pred             ECCCCcEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC--CcEEEEEEccCCCceEEE
Confidence            999999999998887   899999999999999999999999999999999999887664  46899999999873 244


Q ss_pred             EeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccccc---------
Q 001362          640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS---------  710 (1092)
Q Consensus       640 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i---------  710 (1092)
                      .+.++.+.+|+.......            +.++                      |+++.+++++.+...         
T Consensus       289 ~~~~~~~~~~~~~~~~~~------------~~~~----------------------~~g~~~~~~~~~~~~~~~~~~~~~  334 (814)
T 3mkq_A          289 SGFDNGFTVLSLGNDEPT------------LSLD----------------------PVGKLVWSGGKNAAASDIFTAVIR  334 (814)
T ss_dssp             EEETTEEEEEECSCCSCC------------EEEC----------------------SSSEEEEECCTTSCTTCEEEEECC
T ss_pred             EEeCCCEEEEEcCCCCce------------eEEC----------------------CCCCEEEECcccccceeeeeeecc
Confidence            445677889987655322            2232                      445555444433321         


Q ss_pred             ceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCc
Q 001362          711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ  790 (1092)
Q Consensus       711 ~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~  790 (1092)
                      ..|++.............  ..+...+.+++|+|+|+.+++++ +|.+.+|++....                       
T Consensus       335 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~-----------------------  388 (814)
T 3mkq_A          335 GNEEVEQDEPLSLQTKEL--GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR-----------------------  388 (814)
T ss_dssp             SCCCCCSSSCBCCCCEEE--CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE-----------------------
T ss_pred             cccccccCccceeeeecC--CCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc-----------------------
Confidence            012222111111111111  22556788999999999888887 8999999853211                       


Q ss_pred             eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCC---CEEEEEeCCC
Q 001362          791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN---NVIAIGMDDS  866 (1092)
Q Consensus       791 ~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~---~~lasg~~dg  866 (1092)
                       .       .+...+.+++|+||++++++++ ++.+++|+.        +.+|...+.+++|+| ++   .+|++++.|+
T Consensus       389 -~-------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~-dg~~~~~l~~~~~d~  451 (814)
T 3mkq_A          389 -N-------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAI-DRLFSGALLGVKSDG  451 (814)
T ss_dssp             -E-------EEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCC-CEEECSSSEEEEETT
T ss_pred             -c-------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCc-cceecceEEEEecCC
Confidence             0       1345678999999999999997 699999963        344777889999999 77   5888899999


Q ss_pred             cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE------eCCCcEEEEEcCC---------------Cceeeeee
Q 001362          867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS------GGDAQIFVWDVDG---------------WGIQTCRS  925 (1092)
Q Consensus       867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~------s~Dg~i~iwd~~~---------------~~~~~~~~  925 (1092)
                      .|++||+.+++.+..+.+|..   .++|+|||++|+++      +.++.+.+|--..               +.......
T Consensus       452 ~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (814)
T 3mkq_A          452 FVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDV  528 (814)
T ss_dssp             EEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEE
T ss_pred             EEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheee
Confidence            999999999999999998875   89999999999999      6666555554210               00000111


Q ss_pred             eecCCCCcCCCCCceEEEEecCCCEEEEEe-CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 001362          926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus       926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~v 1004 (1092)
                      +....      ..+.+..|.  +..++... .+.+..+-  .++...  .......+..+.|.+++..++....++.+..
T Consensus       529 ~~~~~------~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  596 (814)
T 3mkq_A          529 LYELS------ESITSGKWV--GDVFIFTTATNRLNYFV--GGKTYN--LAHYTKEMYLLGYLARDNKVYLADREVHVYG  596 (814)
T ss_dssp             EEEEC------SCCSEEEEE--TTEEEEECTTSEEEEEE--TTEEEE--EEECSSCCEEEEEEGGGTEEEEECTTCCEEE
T ss_pred             eeEec------cEEEeeEEe--CCEEEEEcCCCeEEEEe--CCeeEE--EEECCccEEEEEEEecCCEEEEEcCCCCEEE
Confidence            11111      135556664  34443332 34444432  222211  1123556777778899999999999999999


Q ss_pred             EEcCCC
Q 001362         1005 HEASNL 1010 (1092)
Q Consensus      1005 wd~~~~ 1010 (1092)
                      |++...
T Consensus       597 ~~l~~~  602 (814)
T 3mkq_A          597 YEISLE  602 (814)
T ss_dssp             EECCHH
T ss_pred             EEECcH
Confidence            998654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.3e-46  Score=469.94  Aligned_cols=479  Identities=15%  Similarity=0.183  Sum_probs=392.9

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|.+.|.+++|+|||++||+++.||.|+|||+.+++.+.   .+.+|.++|.+++|+|+++  +|++++.||.|++||
T Consensus         9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN   83 (814)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred             eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence            77899999999999999999999999999999999986555   6779999999999999999  899999999999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEcc-CCCEEEEEec
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT  549 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~  549 (1092)
                      +.+++.+..+.+|...|.+++|++  ++.+|++++.||.|++||+++. .....+..+...+.+++|+| +++.+++++.
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  161 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence            999999999999999999999965  6689999999999999999987 45567788899999999999 8889999876


Q ss_pred             CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001362          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                          ++.|++||+.++.....+..+.  ...+.+++|+|  ++.++++++.||.|++||+.+++.+..+..+.  ..|.+
T Consensus       162 ----dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~  233 (814)
T 3mkq_A          162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF  233 (814)
T ss_dssp             ----TSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred             ----CCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEE
Confidence                6679999999888877777654  47899999999  99999999999999999999999998888664  46899


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc-eeecc
Q 001362          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE-ISVEA  706 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~s~~~  706 (1092)
                      ++|+|+++++++++.||.|++|+..+++....+..+...+.+++++                      |++..+ ++.+.
T Consensus       234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----------------------~~~~~~~~~~~~  291 (814)
T 3mkq_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH----------------------PTGRKNYIASGF  291 (814)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEEC----------------------TTCGGGEEEEEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEc----------------------cCCCceEEEEEe
Confidence            9999999999999999999999999999999999999999999997                      455433 55666


Q ss_pred             ccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCee-EEEeecCCCcCcCcccccccCCccccC
Q 001362          707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQP  785 (1092)
Q Consensus       707 d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i-~lw~~~~~~~~~~~~~~~~~~~~~w~~  785 (1092)
                      ++.+.+|++...                  ...+.++|+|+.+++++.+... .++....              ...|+.
T Consensus       292 ~~~~~~~~~~~~------------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------------~~~~~~  339 (814)
T 3mkq_A          292 DNGFTVLSLGND------------------EPTLSLDPVGKLVWSGGKNAAASDIFTAVI--------------RGNEEV  339 (814)
T ss_dssp             TTEEEEEECSCC------------------SCCEEECSSSEEEEECCTTSCTTCEEEEEC--------------CSCCCC
T ss_pred             CCCEEEEEcCCC------------------CceeEECCCCCEEEECcccccceeeeeeec--------------cccccc
Confidence            777888875421                  2346789999988877665321 1111100              011333


Q ss_pred             CCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001362          786 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD  865 (1092)
Q Consensus       786 ~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d  865 (1092)
                      ..+............+...+.+++|+|+|+++++++++.+.+|++.......     .+.+.+++|+| +++++|+++.+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-dg~~la~~~~~  413 (814)
T 3mkq_A          340 EQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-DSNSYALIDET  413 (814)
T ss_dssp             CSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-TSSCEEEECTT
T ss_pred             ccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-CCCeEEEEeCC
Confidence            3332221111111136677899999999999999999999999987654432     35678999999 89999999999


Q ss_pred             CcEEEEEcCCceeeEeeccccCCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEE
Q 001362          866 STILIYNARSSEVISKLEGHSKRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI  942 (1092)
Q Consensus       866 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg---~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l  942 (1092)
                      |.|++|+        .+.+|...+.+++|+||+   ++|++++.|+.|++||+.+++     .+.....+.      ..+
T Consensus       414 g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~~------~~v  474 (814)
T 3mkq_A          414 GQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVNA------KDV  474 (814)
T ss_dssp             CCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSCE------EEE
T ss_pred             CcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecCC------CEE
Confidence            9999995        345688899999999998   689999999999999999865     333333332      389


Q ss_pred             EEecCCCEEEEE------eCCcEEEEEc
Q 001362          943 QFHKDQTRFLLV------HETHLAIYEA  964 (1092)
Q Consensus       943 ~~s~dg~~la~~------~d~~i~lwd~  964 (1092)
                      +|+|||++|+++      .++.+.++..
T Consensus       475 ~~s~dg~~la~~~~~~~~~~~~~~~~~~  502 (814)
T 3mkq_A          475 IWSDNGELVMIVNTNSNGDEASGYTLLF  502 (814)
T ss_dssp             EECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred             EEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence            999999999997      6667776644

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-45  Score=421.12  Aligned_cols=288  Identities=22%  Similarity=0.368  Sum_probs=267.3

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      ..|.+|.+.|++++|+|+++ +|++|+.||+|+|||+.+++....                   +.+|...|.+++|+|+
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~  161 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHS  161 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTT
T ss_pred             EeecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCC
Confidence            45789999999999999998 799999999999999999987765                   7789999999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001362          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      |++|++|+.|++|++||+.+++++.   .+.+|...|.+++|+|+++  ++++|+.|++|++||+.++.++..+.+|...
T Consensus       162 ~~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~  236 (410)
T 1vyh_C          162 GKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREW  236 (410)
T ss_dssp             SSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             CCEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence            9999999999999999999887655   6789999999999999999  8999999999999999999999999999999


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC--------------------CCEEEEE
Q 001362          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--------------------GRRLFSC  547 (1092)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d--------------------g~~l~~~  547 (1092)
                      |.++.++  +++.+|++++.||+|++||+.+......+..|...|.+++|+|+                    |.+++++
T Consensus       237 v~~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg  314 (410)
T 1vyh_C          237 VRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  314 (410)
T ss_dssp             EEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             EEEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence            9999985  47789999999999999999999999999999999999999996                    6689998


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001362          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                      +.    ++.|++||+.++..+..+.+|.   ..|.+++|+|+++++++|+.||+|++||+.+++.+..+..|.  ..|.+
T Consensus       315 s~----D~~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~--~~v~~  385 (410)
T 1vyh_C          315 SR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVTS  385 (410)
T ss_dssp             ET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEEE
T ss_pred             eC----CCeEEEEECCCCceEEEEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC--CcEEE
Confidence            76    6679999999999999999988   899999999999999999999999999999999999988664  46999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEEC
Q 001362          628 ICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      ++|+|++.+|++|+.||+|++|+.
T Consensus       386 l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          386 LDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEeC
Confidence            999999999999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1e-39  Score=363.03  Aligned_cols=296  Identities=19%  Similarity=0.269  Sum_probs=266.4

Q ss_pred             CcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001362          323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1092)
Q Consensus       323 p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l  402 (1092)
                      +....++|.+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+..                   +..|...|.++
T Consensus        44 ~~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~  103 (340)
T 1got_B           44 QMRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTC  103 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEE
T ss_pred             cchhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEE
Confidence            3456788999999999999999998 799999999999999999987764                   56799999999


Q ss_pred             EECCCCCEEEEEeCCCEEEEEEccCCCc-ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001362          403 VWSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  481 (1092)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~  481 (1092)
                      +|+|+|++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++.   +++++.|++|++||+.+++.+..+
T Consensus       104 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~  180 (340)
T 1got_B          104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTF  180 (340)
T ss_dssp             EECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEE
Confidence            9999999999999999999999987643 233446789999999999999875   889999999999999999999999


Q ss_pred             ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001362          482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1092)
Q Consensus       482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1092)
                      .+|...|.+++|++  ++.++++|+.||.|++||+++......+..|...|.+++|+|+++++++++.    ++.|++||
T Consensus       181 ~~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd  254 (340)
T 1got_B          181 TGHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFD  254 (340)
T ss_dssp             CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred             cCCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEE
Confidence            99999999999965  6689999999999999999999999999999999999999999999999986    56699999


Q ss_pred             CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001362          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1092)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  641 (1092)
                      +.+++.+..+.... ....|.+++|+|+++++++|+.|+.|++||+.+++.+..+..|.  ..|.+++|+|+|.+|++++
T Consensus       255 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s  331 (340)
T 1got_B          255 LRADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGS  331 (340)
T ss_dssp             TTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSCEEEEE
T ss_pred             CCCCcEEEEEccCC-cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCEEEEEc
Confidence            99998877765322 23579999999999999999999999999999999999888664  4699999999999999999


Q ss_pred             CCCeEEEEE
Q 001362          642 NENRIKILE  650 (1092)
Q Consensus       642 ~dg~i~iw~  650 (1092)
                      .|+.|++||
T Consensus       332 ~D~~i~iWd  340 (340)
T 1got_B          332 WDSFLKIWN  340 (340)
T ss_dssp             TTSCEEEEC
T ss_pred             CCccEEecC
Confidence            999999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.1e-40  Score=360.69  Aligned_cols=294  Identities=15%  Similarity=0.235  Sum_probs=265.5

Q ss_pred             ceeeecccCCCCceEEeecCC----CceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPV----QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  400 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spd----g~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~  400 (1092)
                      ...+.+.+|.+.|++++|+|+    ++ +|++|+.|++|+|||+.+++....                 ..+.+|...|.
T Consensus        23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v~   84 (321)
T 3ow8_A           23 ILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGVV   84 (321)
T ss_dssp             EEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEE
T ss_pred             heeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCEE
Confidence            345678899999999999985    44 799999999999999987654321                 12779999999


Q ss_pred             EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001362          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      +++|+|++.++++++.|++|++||+.+++.+.   .+..|...+.+++|+|+++  +|++++.|+.|++||+++++....
T Consensus        85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~  159 (321)
T 3ow8_A           85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYS  159 (321)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEE
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEE
Confidence            99999999999999999999999999987555   6778889999999999999  899999999999999999999999


Q ss_pred             EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001362          481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                      +..|...|.+++|++  ++++|++++.||.|++||+.+++....+..+..+|.+++|+|++++|++++.    ++.|++|
T Consensus       160 ~~~~~~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iw  233 (321)
T 3ow8_A          160 LDTRGKFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIY  233 (321)
T ss_dssp             EECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEE
T ss_pred             ecCCCceEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEE
Confidence            999999999999955  7789999999999999999999888899999999999999999999999976    5669999


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001362          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI  640 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  640 (1092)
                      |+.+++....+.+|.   ..|.+++|+|++.+|++++.|++|++||+.+++++..+..+.  ..|.+++|+|++++|+++
T Consensus       234 d~~~~~~~~~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~  308 (321)
T 3ow8_A          234 DVQHANLAGTLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSV  308 (321)
T ss_dssp             ETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEE
T ss_pred             ECCCcceeEEEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEE
Confidence            999999999999888   899999999999999999999999999999999999987654  469999999999999999


Q ss_pred             eCCCeEEEEECC
Q 001362          641 ANENRIKILETP  652 (1092)
Q Consensus       641 ~~dg~i~iw~~~  652 (1092)
                      +.||.|++||.+
T Consensus       309 ~~d~~i~vwd~p  320 (321)
T 3ow8_A          309 GDDQEIHIYDCP  320 (321)
T ss_dssp             ETTCCEEEEECC
T ss_pred             eCCCeEEEEeCC
Confidence            999999999964

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.5e-39  Score=363.28  Aligned_cols=298  Identities=17%  Similarity=0.240  Sum_probs=268.2

Q ss_pred             cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ....++|.+|++.|++++|+||++ +||+|+.||+|+|||..+++....                   +..|...|.+++
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~  113 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACA  113 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEE
T ss_pred             cEEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEE
Confidence            456788999999999999999998 699999999999999999887654                   556889999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCc---ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001362          404 WSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      |+|+|++||+|+.|+.+++|++.....   ......+.+|...|.+++|+|++.  .|++++.|++|++||+++++.+..
T Consensus       114 ~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~  191 (354)
T 2pbi_B          114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQS  191 (354)
T ss_dssp             ECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEE
Confidence            999999999999999999999875421   223446778999999999999999  799999999999999999999999


Q ss_pred             EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001362          481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                      +.+|...|.++++++.+++.+|++|+.||+|++||+++++....+..|...|.+++|+|+++++++++.    ++.|++|
T Consensus       192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lw  267 (354)
T 2pbi_B          192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLY  267 (354)
T ss_dssp             EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEE
T ss_pred             EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEE
Confidence            999999999999998878899999999999999999999999999999999999999999999999986    5679999


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001362          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI  640 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  640 (1092)
                      |+.+++.+..+..+. ....+.+++|+|++.++++|+.|++|++||+.+++.+..+..|  ...|.+++|+|+|++|+++
T Consensus       268 d~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h--~~~v~~l~~spdg~~l~sg  344 (354)
T 2pbi_B          268 DLRADREVAIYSKES-IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH--ENRVSTLRVSPDGTAFCSG  344 (354)
T ss_dssp             ETTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSCEEEE
T ss_pred             ECCCCcEEEEEcCCC-cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC--CCcEEEEEECCCCCEEEEE
Confidence            999988877766433 2347899999999999999999999999999999998888765  4469999999999999999


Q ss_pred             eCCCeEEEEE
Q 001362          641 ANENRIKILE  650 (1092)
Q Consensus       641 ~~dg~i~iw~  650 (1092)
                      +.|+.|++|+
T Consensus       345 s~D~~v~vW~  354 (354)
T 2pbi_B          345 SWDHTLRVWA  354 (354)
T ss_dssp             ETTSEEEEEC
T ss_pred             cCCCCEEecC
Confidence            9999999995

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.8e-39  Score=352.15  Aligned_cols=293  Identities=18%  Similarity=0.309  Sum_probs=257.5

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ...++|.+|++.|++++|+|+|+ +|++|+.||+|+|||+.++..+..                   +.+|..+|.+++|
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~   63 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF   63 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence            45678999999999999999998 689999999999999999887764                   6679999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEec
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG  483 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~  483 (1092)
                      +|++++|++|+.|++|++||+.+++.+.   .+.+|.+.|.+++|+|+++  +|++|+.|++|++||++++ .....+.+
T Consensus        64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~  138 (304)
T 2ynn_A           64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG  138 (304)
T ss_dssp             EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred             eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence            9999999999999999999999987655   6889999999999999999  8999999999999999987 45577899


Q ss_pred             CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCceEEEEEcc--CCCEEEEEecCCCCceeEEEE
Q 001362          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                      |...|.+++|+|. ++.+|++|+.||+|++||+........+. .+...+..+.|+|  ++.+|++++.    ++.|++|
T Consensus       139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW  213 (304)
T 2ynn_A          139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW  213 (304)
T ss_dssp             CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred             cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence            9999999999764 45799999999999999998877666554 4556888899986  7789999986    6779999


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC--EEE
Q 001362          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA  638 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~  638 (1092)
                      |+.+++++..+.+|.   ..|.+++|+|++++|++|+.||+|++||..+++.+..+..+.  ..+.+++|+|++.  +++
T Consensus       214 d~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a  288 (304)
T 2ynn_A          214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA  288 (304)
T ss_dssp             ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEE
T ss_pred             eCCCCccceeeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEE
Confidence            999999999999988   899999999999999999999999999999999999987653  4688999999875  577


Q ss_pred             EEeCCCeEEEEECCC
Q 001362          639 VIANENRIKILETPE  653 (1092)
Q Consensus       639 ~~~~dg~i~iw~~~~  653 (1092)
                      +|+.| .+.+|++..
T Consensus       289 sg~~~-g~~~~~~~~  302 (304)
T 2ynn_A          289 SGFDN-GFTVLSLGN  302 (304)
T ss_dssp             EEETT-EEEEEECC-
T ss_pred             EecCC-ceEEEEecc
Confidence            77665 567777654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=9.9e-39  Score=351.37  Aligned_cols=301  Identities=19%  Similarity=0.239  Sum_probs=259.3

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      .+..+|.+|++.|++++|+|++..+|++|+.|++|++||+.+.......              ....+.+|...|.+++|
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~   73 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTL   73 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEE
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEE
Confidence            3457899999999999999977448999999999999998754332111              11237799999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      +|||++|++|+.|++|++||+.+++.+.   .+.+|...|.+++|+|++.  ++++|+.|++|++||++ ++++..+.+|
T Consensus        74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h  147 (319)
T 3frx_A           74 TADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGH  147 (319)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCC
T ss_pred             CCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEecc
Confidence            9999999999999999999999987554   6889999999999999999  89999999999999975 6678889999


Q ss_pred             CcCeEEEeecccC----CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001362          485 GAPVYSLCPHAKE----NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       485 ~~~v~~~~~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                      ...|.++.+.+..    ++..+++++.|+.|++||++.......+..|...|.+++|+|+|++|++++.    ++.|++|
T Consensus       148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iw  223 (319)
T 3frx_A          148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLW  223 (319)
T ss_dssp             SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEE
T ss_pred             CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEE
Confidence            9999999997643    4568999999999999999998888889999999999999999999999986    6779999


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC------CCCCCceEEEccCC
Q 001362          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNG  634 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~~  634 (1092)
                      |+.+++.+..+..+    ..|.+++|+|++.++++++.+ .+++|++..+..+..+..+.      +...+.+++|+|+|
T Consensus       224 d~~~~~~~~~~~~~----~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  298 (319)
T 3frx_A          224 NLAAKKAMYTLSAQ----DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG  298 (319)
T ss_dssp             ETTTTEEEEEEECC----SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS
T ss_pred             ECCCCcEEEEecCC----CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC
Confidence            99999998888764    479999999999998888765 59999999888777765331      22457799999999


Q ss_pred             CEEEEEeCCCeEEEEECCCC
Q 001362          635 TLLAVIANENRIKILETPES  654 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      ++|++|+.||.|++|++.++
T Consensus       299 ~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          299 QTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             SEEEEEETTSCEEEEEEEEC
T ss_pred             CEEEEeecCceEEEEEEeec
Confidence            99999999999999998653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.1e-39  Score=366.46  Aligned_cols=306  Identities=17%  Similarity=0.256  Sum_probs=265.5

Q ss_pred             cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ..+.++|.+|++.|++++|+|+|+ +|++|+.|++|+|||+.+++....                   +.+|...|.+++
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~  115 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA  115 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred             eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence            456789999999999999999998 699999999999999999887764                   667999999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCc----ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001362          404 WSPDGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      |+|+|++||+|+.|+.|++||+.+...    ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+.
T Consensus       116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~  194 (380)
T 3iz6_a          116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS  194 (380)
T ss_dssp             ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred             ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence            999999999999999999999975421    1122357799999999999998654 69999999999999999999998


Q ss_pred             EE-----ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001362          480 SF-----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       480 ~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      .+     .+|...|.++++++. ++.+|++|+.||+|++||++. ......+..|...|.+++|+|++++|++++.    
T Consensus       195 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----  269 (380)
T 3iz6_a          195 IFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD----  269 (380)
T ss_dssp             EECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred             EeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence            87     679999999998653 567999999999999999984 4667788899999999999999999999986    


Q ss_pred             ceeEEEEeCCCCeEEEEEeecccc----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC--CCCCCCCce
Q 001362          554 ESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA--GGGLPENPR  627 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~  627 (1092)
                      ++.|++||+.+++.+..+..+...    ...|.+++|+|+++++++|+.||.|++||..+++.+..+..  .++...|.+
T Consensus       270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~  349 (380)
T 3iz6_a          270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC  349 (380)
T ss_dssp             SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred             CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence            667999999999998888765311    13488999999999999999999999999999998877732  234567999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001362          628 ICFNKNGTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      ++|+|+|++|++|+.|+.|++|++...+
T Consensus       350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          350 LGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            9999999999999999999999987653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-38  Score=361.92  Aligned_cols=286  Identities=18%  Similarity=0.287  Sum_probs=267.0

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|..+|++++|+|++++|++|+.|++|+|||+.+++...   .+.+|.+.|.+++|+|+++  +|++|+.|++|++||
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD  178 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence            66899999999999999999999999999999999987665   7889999999999999999  899999999999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      +.+++++..+.+|...|.+++|++  ++.+|++|+.|++|++||+.++.....+..|...+.++.++|+++++++++.  
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~--  254 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN--  254 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence            999999999999999999999965  6679999999999999999999999999999999999999999999999986  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC--------------------CCEEEEEeCCCcEEEEECCCCc
Q 001362          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--------------------KDQILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~--------------------~~~l~~~s~dg~i~iwd~~~~~  611 (1092)
                        ++.|++||+.+++....+.+|.   ..|.+++|+|+                    +.++++|+.|++|++||+.++.
T Consensus       255 --D~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~  329 (410)
T 1vyh_C          255 --DQTVRVWVVATKECKAELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  329 (410)
T ss_dssp             --TSCEEEEETTTCCEEEEECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             --CCeEEEEECCCCceeeEecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence              5669999999999999998888   89999999996                    6789999999999999999999


Q ss_pred             eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeec
Q 001362          612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN  691 (1092)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  691 (1092)
                      .+..+..|.  ..|.+++|+|++++|++++.||.|++||..+++.+..+.+|...|.+++|+                  
T Consensus       330 ~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------  389 (410)
T 1vyh_C          330 CLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH------------------  389 (410)
T ss_dssp             EEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC------------------
T ss_pred             eEEEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc------------------
Confidence            999988664  468999999999999999999999999999999999999999999999996                  


Q ss_pred             CCCCCCCccceeeccccccceecc
Q 001362          692 EDPKEDVKPEISVEAENKSEVEKP  715 (1092)
Q Consensus       692 ~~~s~d~~~l~s~~~d~~i~lw~~  715 (1092)
                          |++.++++++.|++|++|+.
T Consensus       390 ----~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          390 ----KTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ----SSSSCEEEEETTSEEEEEC-
T ss_pred             ----CCCCEEEEEeCCCcEEEEeC
Confidence                67889999999999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.6e-39  Score=360.42  Aligned_cols=320  Identities=16%  Similarity=0.205  Sum_probs=231.0

Q ss_pred             ceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCC
Q 001362          701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP  780 (1092)
Q Consensus       701 l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~  780 (1092)
                      ++.++.+.....|++....+          ..|...|.+++|+|||++|++++.|. +++||-               .+
T Consensus        19 ~~~~~g~~~~~~w~~p~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~---------------~v   72 (357)
T 4g56_B           19 YFQSNGSSKGSAWGRPVTAP----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG---------------SI   72 (357)
T ss_dssp             -------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------EE
T ss_pred             EEecCCCccccccCCCCCCc----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------eE
Confidence            34455567778888653322          24888999999999999999998743 233431               23


Q ss_pred             ccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeE----EecCCCCCeEEEEEcCCCC
Q 001362          781 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLAFNPHDN  856 (1092)
Q Consensus       781 ~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~d~  856 (1092)
                      ++|+..++...........+|...|.+++|+|++++++++.||+|+|||+.+++...    ...+|...|++++|+| ++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg  151 (357)
T 4g56_B           73 WVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DG  151 (357)
T ss_dssp             EEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SS
T ss_pred             EEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CC
Confidence            334444433222221222247889999999999988877778999999999887543    3457899999999999 89


Q ss_pred             CEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001362          857 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  935 (1092)
Q Consensus       857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  935 (1092)
                      ++|++|+.||.|++||+.+++++..+.+|...|++++|+|++. ++++++.|++|++||+.+++....  + ....+.  
T Consensus       152 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--~-~~~~~~--  226 (357)
T 4g56_B          152 TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--I-DFCASD--  226 (357)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB--C-CCTTCC--
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee--e-eecccc--
Confidence            9999999999999999999999999999999999999999875 789999999999999988653321  1 111222  


Q ss_pred             CCCceEEEEecCC-CEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCce
Q 001362          936 APSETHIQFHKDQ-TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus       936 ~~~v~~l~~s~dg-~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
                       ..+.+++|+|++ .+|++ +.|+.|++||+.+++++.. +.+|...|++++|+|++ ++|++++.||+|+|||+.+++.
T Consensus       227 -~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~  304 (357)
T 4g56_B          227 -TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV  304 (357)
T ss_dssp             -SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred             -ccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence             368999999985 56777 5789999999999998877 56899999999999997 5799999999999999999987


Q ss_pred             EEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001362         1013 QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus      1013 ~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
                      +..+.         |...|.  +++|+|.|+.+|++++.||+|++|+++..+.
T Consensus       305 ~~~~~---------H~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          305 FRDLS---------HRDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             EEECC---------CSSCEE--EEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             eEECC---------CCCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            75432         455565  7889997789999999999999999976654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.5e-38  Score=347.16  Aligned_cols=286  Identities=14%  Similarity=0.182  Sum_probs=263.1

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|.+.|.+++|+||+++|++|+.|++|++||+.+++.+.   .+..|...|.+++|+|+++  ++++|+.|+.|++||
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~  125 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN  125 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence            77899999999999999999999999999999999886554   6778999999999999999  899999999999999


Q ss_pred             CCCC----ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001362          472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       472 ~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      +.++    +....+.+|...|.++.|.+.  + .+++++.|++|++||+.++.....+..|...|.+++|+|++++++++
T Consensus       126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          126 LKTREGNVRVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             TTTCSBSCEEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CccCCCcceeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence            9876    356778899999999999653  3 59999999999999999999989999999999999999999999999


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001362          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                      +.    ++.|++||+.++..+..+.+|.   ..|.+++|+|+++++++|+.||+|++||+.+++.+..+..+.....|.+
T Consensus       203 ~~----d~~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~  275 (340)
T 1got_B          203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             ET----TSCEEEEETTTCSEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             eC----CCcEEEEECCCCeeEEEEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence            86    5669999999999999999888   8999999999999999999999999999999998888775555456899


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001362          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      ++|+|+|+++++|+.||.|++||..++..+..+.+|...|.+++++                      |++.++++++.|
T Consensus       276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~s~s~D  333 (340)
T 1got_B          276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD  333 (340)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred             EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc----------------------CCCCEEEEEcCC
Confidence            9999999999999999999999999999999999999999999996                      789999999999


Q ss_pred             cccceec
Q 001362          708 NKSEVEK  714 (1092)
Q Consensus       708 ~~i~lw~  714 (1092)
                      ++|++|+
T Consensus       334 ~~i~iWd  340 (340)
T 1got_B          334 SFLKIWN  340 (340)
T ss_dssp             SCEEEEC
T ss_pred             ccEEecC
Confidence            9999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.6e-38  Score=349.59  Aligned_cols=306  Identities=15%  Similarity=0.240  Sum_probs=250.3

Q ss_pred             ceeeecccCCC-CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          325 TVAQTLIEGSS-SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       325 ~~~~~l~~h~~-~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      .++++|.+|.+ .|++++|+|||+ +||+|+.|++|+|||+.++.....                .....+|...|.+++
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~   68 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVA   68 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEE
T ss_pred             EEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEE
Confidence            46788999988 999999999998 699999999999999988754321                112468999999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc---eeEE
Q 001362          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYS  480 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~---~~~~  480 (1092)
                      |+|+|++||+|+.|++|++||+.++.. .....+.+|...|.+++|+|+++  +|++|+.|++|++||+.++.   ++..
T Consensus        69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~  145 (345)
T 3fm0_A           69 WSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSV  145 (345)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred             ECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence            999999999999999999999987642 23346889999999999999999  89999999999999998763   4667


Q ss_pred             EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001362          481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1092)
                      +.+|...|.+++|+|  ++.+|++++.|++|++||......  ...+..|...|.+++|+|+|++|++++.    ++.|+
T Consensus       146 ~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~  219 (345)
T 3fm0_A          146 LNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVR  219 (345)
T ss_dssp             ECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEE
T ss_pred             ecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEE
Confidence            889999999999965  668999999999999999987653  4577889999999999999999999986    66799


Q ss_pred             EEeCCCC---------------eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-------EEEE
Q 001362          559 EWNESEG---------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL-------LTTI  616 (1092)
Q Consensus       559 iwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~-------~~~~  616 (1092)
                      +||....               .++..+.+.  |...|.+++|+|++..+++++.|+.|++|+...+..       +...
T Consensus       220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~  297 (345)
T 3fm0_A          220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH  297 (345)
T ss_dssp             EEEEECTTCTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred             EeccccCCCCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence            9986321               233444442  247899999999999999999999999999875421       1111


Q ss_pred             eCCCCCCCCceEEEccCC-CEEEEEeCCCeEEEEECCCCceee
Q 001362          617 DAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD  658 (1092)
Q Consensus       617 ~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~  658 (1092)
                      ...++...|.+++|+|++ .+|++++.||+|++|+..+++...
T Consensus       298 ~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             ETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred             ecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence            122445679999999987 599999999999999998876543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.1e-38  Score=343.73  Aligned_cols=288  Identities=16%  Similarity=0.246  Sum_probs=263.4

Q ss_pred             ecCCCCcEEEEEECCC----CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001362          392 VRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1092)
Q Consensus       392 l~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  467 (1092)
                      +.+|.+.|.+++|+|+    +++|++|+.|++|+||++.+++. .....+.+|...|.+++|++++.  ++++++.|++|
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i  104 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI  104 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence            5689999999999985    67999999999999999987643 22336889999999999999999  89999999999


Q ss_pred             EEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001362          468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       468 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      ++||+.+++.+..+..|...+.+++|+|  ++.+|++++.||.|++|++++......+..+...+.+++|+|+|++|+++
T Consensus       105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg  182 (321)
T 3ow8_A          105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG  182 (321)
T ss_dssp             EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence            9999999999999999999999999955  77899999999999999999999988888888999999999999999999


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001362          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                      +.    ++.|++||+.+++.+..+.+|.   ..|.+++|+|++++|++++.|++|++||+.+++....+..|.  ..|.+
T Consensus       183 ~~----dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~--~~v~~  253 (321)
T 3ow8_A          183 AI----DGIINIFDIATGKLLHTLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA--SWVLN  253 (321)
T ss_dssp             ET----TSCEEEEETTTTEEEEEECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS--SCEEE
T ss_pred             cC----CCeEEEEECCCCcEEEEEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC--CceEE
Confidence            86    5669999999999999999887   899999999999999999999999999999999998887654  46899


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001362          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      ++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+                      |+++.+++++.|
T Consensus       254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s----------------------~~g~~l~s~~~d  311 (321)
T 3ow8_A          254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN----------------------GNGSKIVSVGDD  311 (321)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETT
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEEC----------------------CCCCEEEEEeCC
Confidence            9999999999999999999999999999999999999999999996                      788899999999


Q ss_pred             cccceecc
Q 001362          708 NKSEVEKP  715 (1092)
Q Consensus       708 ~~i~lw~~  715 (1092)
                      ++|++||.
T Consensus       312 ~~i~vwd~  319 (321)
T 3ow8_A          312 QEIHIYDC  319 (321)
T ss_dssp             CCEEEEEC
T ss_pred             CeEEEEeC
Confidence            99999995

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.3e-37  Score=338.09  Aligned_cols=295  Identities=18%  Similarity=0.310  Sum_probs=261.3

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ....++.+|.+.|++++|+|+|+ +|++|+.||.|+||++.+++....                   +.+|...|.+++|
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~   73 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW   73 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred             eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence            45678899999999999999998 689999999999999999887654                   6789999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      +|++++|++|+.|+.|++||+.+++.+.   .+.+|...|.+++|+|+++  ++++|+.|+.|++||+++++.+..+..|
T Consensus        74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~  148 (312)
T 4ery_A           74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH  148 (312)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence            9999999999999999999999987555   6789999999999999999  8999999999999999999999999999


Q ss_pred             CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001362          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      ..+|.+++|++  ++.++++++.||.|++||+.+.+....+. .+...+..++|+|+++++++++.    ++.|++||+.
T Consensus       149 ~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~  222 (312)
T 4ery_A          149 SDPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS  222 (312)
T ss_dssp             SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred             CCcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence            99999999965  67899999999999999999888766554 45567999999999999999986    6679999999


Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe--
Q 001362          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--  641 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--  641 (1092)
                      +++.+..+.+|......+......+++.++++|+.||.|++||+.+++.+..+..|.  ..|.+++|+|+++++++++  
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~~  300 (312)
T 4ery_A          223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--DVVISTACHPTENIIASAALE  300 (312)
T ss_dssp             TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECSSSSEEEEEECT
T ss_pred             CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC--CcEEEEeecCcCCceEEEEcc
Confidence            999999998877332334444445778899999999999999999999999988664  4689999999999999997  


Q ss_pred             CCCeEEEEECC
Q 001362          642 NENRIKILETP  652 (1092)
Q Consensus       642 ~dg~i~iw~~~  652 (1092)
                      .|+.|++|+..
T Consensus       301 ~d~~i~~W~~d  311 (312)
T 4ery_A          301 NDKTIKLWKSD  311 (312)
T ss_dssp             TTCCEEEEECC
T ss_pred             CCccEEEecCC
Confidence            69999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4e-38  Score=351.99  Aligned_cols=295  Identities=13%  Similarity=0.145  Sum_probs=238.9

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcC------CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          330 LIEGSSSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~------d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ..+|+..|++++|||||+ +||+|+.      |++|++|+..++........               ...+|...|.+++
T Consensus        38 p~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~V~~~~  101 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---------------AGVQTEAGVTDVA  101 (357)
T ss_dssp             --CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCS---------------EEEECSSCEEEEE
T ss_pred             cccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEec---------------ccCCCCCCEEEEE
Confidence            357999999999999998 6889887      67899999887765432111               1446899999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCcccc-eEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001362          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      |+|++++| +++.||+|+|||+.+++.... .....+|...|++++|+|+++  +|++|+.|++|++||+.+++.+..+.
T Consensus       102 ~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~  178 (357)
T 4g56_B          102 WVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYN  178 (357)
T ss_dssp             EETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            99998655 577899999999998865432 224558999999999999999  89999999999999999999999999


Q ss_pred             cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe--cCCCCceEEEEEccCC-CEEEEEecCCCCceeEEE
Q 001362          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~i  559 (1092)
                      +|...|++++|++..+ .++++++.||+|++||+++.+....+  ..+...+.+++|+|++ .++++++.    ++.|++
T Consensus       179 ~h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~  253 (357)
T 4g56_B          179 AHSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSL  253 (357)
T ss_dssp             CCSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEE
T ss_pred             CCCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeE
Confidence            9999999999976533 47899999999999999988776544  3455679999999985 56777765    566999


Q ss_pred             EeCCCCeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEE
Q 001362          560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLL  637 (1092)
Q Consensus       560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l  637 (1092)
                      ||+.+++.+..+.+|.   ..|.+++|+|++ ++|++|+.|++|+|||+++++.+..+.   +...|.+++|+| ++.+|
T Consensus       254 wd~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~---H~~~V~~vafsP~d~~~l  327 (357)
T 4g56_B          254 VNIKNPDSAQTSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS---HRDFVTGVAWSPLDHSKF  327 (357)
T ss_dssp             EESSCGGGCEEECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC---CSSCEEEEEECSSSTTEE
T ss_pred             EECCCCcEeEEEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC---CCCCEEEEEEeCCCCCEE
Confidence            9999999999999888   899999999987 578899999999999999998877653   345699999998 89999


Q ss_pred             EEEeCCCeEEEEECCCC
Q 001362          638 AVIANENRIKILETPES  654 (1092)
Q Consensus       638 ~~~~~dg~i~iw~~~~~  654 (1092)
                      ++++.||+|++|++...
T Consensus       328 ~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          328 TTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEETTSCEEEEECC--
T ss_pred             EEEcCCCeEEEEECCCC
Confidence            99999999999999764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=343.85  Aligned_cols=299  Identities=14%  Similarity=0.116  Sum_probs=239.2

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeeccccc-ceeeEeeecCCCCcEEEEEECCCCC
Q 001362          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS-MLFKTALVRDPGVSVNRVVWSPDGS  409 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~-~~~~~~~l~~h~~~V~~l~~spdg~  409 (1092)
                      ..|...|.+++|||||+ +|++++ |+++++||...         .+|+..... ..-.......|...|.+++|+||+ 
T Consensus        27 ~~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-   94 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-   94 (344)
T ss_dssp             SSCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-
T ss_pred             ccccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-
Confidence            35667899999999998 677776 77888887321         112110000 000000122366789999999985 


Q ss_pred             EEEEEeCCCEEEEEEccCCCcccce-EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe
Q 001362          410 LLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  488 (1092)
                      +|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|||+  +|++|+.|++|++||+++++++..+.+|...|
T Consensus        95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V  172 (344)
T 4gqb_B           95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV  172 (344)
T ss_dssp             EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence            6889999999999999998876532 24558999999999999999  89999999999999999999999999999999


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCCCC
Q 001362          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      .+++|++.. ..+|++++.||+|++||+++.+....+.  .+...+.+++|+|++ +++++++.    ++.|++||++++
T Consensus       173 ~~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~  247 (344)
T 4gqb_B          173 TCVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKST  247 (344)
T ss_dssp             EEEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC-
T ss_pred             EEEEecCCC-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCC
Confidence            999997643 2588999999999999999988877664  345578999999954 56777765    677999999999


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCC
Q 001362          566 AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANE  643 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~d  643 (1092)
                      +.+..+.+|.   ..|.+++|+|++ ++|++|+.|++|++||+.++++.. +..  +...|.+++|+|+++ +|++++.|
T Consensus       248 ~~~~~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~--H~~~V~~v~~sp~~~~llas~s~D  321 (344)
T 4gqb_B          248 SCVLSSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQA--HRDFVRDATWSPLNHSLLTTVGWD  321 (344)
T ss_dssp             -CCEEEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECC--CSSCEEEEEECSSSTTEEEEEETT
T ss_pred             cEEEEEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcC--CCCCEEEEEEeCCCCeEEEEEcCC
Confidence            9999999988   899999999998 578899999999999999987654 443  445799999999886 67789999


Q ss_pred             CeEEEEECCCC
Q 001362          644 NRIKILETPES  654 (1092)
Q Consensus       644 g~i~iw~~~~~  654 (1092)
                      ++|++|++.+.
T Consensus       322 ~~v~~w~v~~~  332 (344)
T 4gqb_B          322 HQVVHHVVPTE  332 (344)
T ss_dssp             SCEEEEECCC-
T ss_pred             CeEEEEECCCC
Confidence            99999999865

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6.4e-38  Score=346.87  Aligned_cols=296  Identities=13%  Similarity=0.158  Sum_probs=227.5

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001362          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      +...|.+++|+|||+.+++++ |+.+++|+....               +|+................+...|.+++|+|
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~   92 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVG   92 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence            566799999999999777665 778888874211               1111000000000000002567899999999


Q ss_pred             CCCEEEEEeCCeEEEEEcCCceeeEE----ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCC
Q 001362          813 NDAYLFSASGGVISLYIVMTFKTILT----IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR  888 (1092)
Q Consensus       813 dg~~l~~~sdg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~  888 (1092)
                      ++.+++.+.||+|+|||+.+++.+..    +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.
T Consensus        93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~  171 (344)
T 4gqb_B           93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ  171 (344)
T ss_dssp             TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence            97655444489999999998876544    448999999999999 8999999999999999999999999999999999


Q ss_pred             eEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC-CCEEEE-EeCCcEEEEEcC
Q 001362          889 VTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAE  965 (1092)
Q Consensus       889 V~~l~~spdg-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~la~-~~d~~i~lwd~~  965 (1092)
                      |++++|+|++ .+|++++.|++|++||+.+++....  +.. ..+.   ..+.+++|+|+ +.+|++ +.|++|++||+.
T Consensus       172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~  245 (344)
T 4gqb_B          172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTK  245 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred             eEEEEecCCCCCceeeeccccccccccccccceeee--eec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence            9999999998 4789999999999999998763331  111 1111   25889999995 567777 578999999999


Q ss_pred             CceeeeeeccCCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCC
Q 001362          966 ELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1044 (1092)
Q Consensus       966 ~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~ 1044 (1092)
                      +++++.. +.+|...|++++|+||| ++|++|+.|++|+|||+.++++.. +.        .|...|.  +++|+|++..
T Consensus       246 ~~~~~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--------~H~~~V~--~v~~sp~~~~  313 (344)
T 4gqb_B          246 STSCVLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--------AHRDFVR--DATWSPLNHS  313 (344)
T ss_dssp             C--CCEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--------CCSSCEE--EEEECSSSTT
T ss_pred             CCcEEEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--------CCCCCEE--EEEEeCCCCe
Confidence            9999887 56899999999999998 589999999999999999987653 22        2556665  7889996666


Q ss_pred             EEEEEeCCCcEEEEeCCCC
Q 001362         1045 QFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus      1045 ~l~~~~~dg~v~~w~~~~~ 1063 (1092)
                      +|++++.||+|++|+++..
T Consensus       314 llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          314 LLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EEEEEETTSCEEEEECCC-
T ss_pred             EEEEEcCCCeEEEEECCCC
Confidence            7889999999999999653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.5e-36  Score=339.07  Aligned_cols=287  Identities=15%  Similarity=0.172  Sum_probs=261.2

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|...|.+++|+||+++||+|+.|++|++||..+++...   .+..|...|.+++|+|+|.  .+++|+.|+.+++|+
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP  134 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence            77899999999999999999999999999999998876544   5678899999999999999  899999999999999


Q ss_pred             CCCC------ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc--CCCE
Q 001362          472 AVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRR  543 (1092)
Q Consensus       472 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--dg~~  543 (1092)
                      +...      .....+.+|...|.+++|++  ++..|++++.||+|++||+++++....+..|...|.+++++|  +|++
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~  212 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT  212 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence            8654      34577889999999999965  567999999999999999999999999999999999999987  5789


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCC
Q 001362          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  623 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~  623 (1092)
                      +++++.    ++.|++||+.+++.+..+.+|.   ..|.+++|+|++.++++++.|++|++||+.+++.+..+..+....
T Consensus       213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~  285 (354)
T 2pbi_B          213 FVSGGC----DKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF  285 (354)
T ss_dssp             EEEEET----TSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred             EEEEeC----CCeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence            999986    5669999999999999998888   899999999999999999999999999999998887776655445


Q ss_pred             CCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001362          624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1092)
Q Consensus       624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1092)
                      .+.+++|+|+++++++++.|+.|++||+.++..+..+.+|...|.+++|+                      ||++++++
T Consensus       286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s----------------------pdg~~l~s  343 (354)
T 2pbi_B          286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS----------------------PDGTAFCS  343 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC----------------------TTSSCEEE
T ss_pred             ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC----------------------CCCCEEEE
Confidence            67899999999999999999999999999999999999999999999996                      78999999


Q ss_pred             eccccccceec
Q 001362          704 VEAENKSEVEK  714 (1092)
Q Consensus       704 ~~~d~~i~lw~  714 (1092)
                      ++.|+++++|+
T Consensus       344 gs~D~~v~vW~  354 (354)
T 2pbi_B          344 GSWDHTLRVWA  354 (354)
T ss_dssp             EETTSEEEEEC
T ss_pred             EcCCCCEEecC
Confidence            99999999995

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-37  Score=354.74  Aligned_cols=334  Identities=13%  Similarity=0.180  Sum_probs=281.7

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCCCcEEEEec----CCCCe------eEEeeeeeeecccccceee-EeeecCCCCcEE
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV----NSGQK------LFIRNFKVWDIGACSMLFK-TALVRDPGVSVN  400 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~----~~~~~------~~~~~~~~~d~~~~~~~~~-~~~l~~h~~~V~  400 (1092)
                      .|.+.|++++|+|+|+.+||+|+.||.|+|||+    .+++.      ......          ++. .....+|...|.
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~v~  112 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH----------PFALSASSGKTTNQVT  112 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC----------CCCCC------CBCEE
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc----------cccccccccCCCCceE
Confidence            456899999999999845899999999999999    88873      221100          000 001223788999


Q ss_pred             EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001362          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      +++|+|++++|++++.|+.|++|| .+++.+.   .+.+|...|.+++|+|+++  +|++++.|+.|++||+.+++.+..
T Consensus       113 ~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          113 CLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEE
Confidence            999999999999999999999999 4444333   6789999999999999999  899999999999999999999999


Q ss_pred             EecCCcC---------------eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001362          481 FEGHGAP---------------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       481 ~~~~~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      +..+...               +.+++|++.   ..+++++.||.|++||+........+..+...+.+++|+|++++++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  263 (425)
T 1r5m_A          187 FELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL  263 (425)
T ss_dssp             ECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred             eeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence            9888777               888888653   4699999999999999999988888889999999999999999999


Q ss_pred             EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCC
Q 001362          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1092)
                      +++.    ++.|++||..+++.+..+.+|.   ..+.+++|+|++ .+++++.|+.|++||+.+++.+..+..+.  ..+
T Consensus       264 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i  333 (425)
T 1r5m_A          264 SASD----DGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG--VPI  333 (425)
T ss_dssp             EEET----TSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT--CCE
T ss_pred             EEcC----CCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC--ccE
Confidence            9986    5569999999999998888877   899999999999 99999999999999999999998888654  468


Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCCc--------------------eeeecccccC--ceeeeeecCCCccccccc
Q 001362          626 PRICFNKNGTLLAVIANENRIKILETPESN--------------------SVDAAGVLSD--NLRKLSVNPISTVTGAGI  683 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~--------------------~~~~~~~~~~--~v~~~~~~~~~~~~~~~~  683 (1092)
                      .+++|+|++++|++++.||.|++|++.++.                    .+..+..|..  .|.+++|+          
T Consensus       334 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----------  403 (425)
T 1r5m_A          334 FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN----------  403 (425)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC----------
T ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc----------
Confidence            999999999999999999999999999877                    7788888866  88888886          


Q ss_pred             cCCceeecCCCCCCCccceeeccccccceeccc
Q 001362          684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~  716 (1092)
                                  |+++++++++.|+.+++|++.
T Consensus       404 ------------~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          404 ------------CAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ------------TTSSEEEEEESSSCCEEEECC
T ss_pred             ------------CCCceEEEEecCceEEEEeec
Confidence                        788899999999999999964

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=351.16  Aligned_cols=327  Identities=16%  Similarity=0.227  Sum_probs=269.6

Q ss_pred             CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEc----cCCCccc---ceEEEcc----------cccceeEEEEecCCCc
Q 001362          394 DPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAY----HGGSDAR---QQLEIDA----------HVGNVNDLAFSAPCKQ  455 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~----~~~~~~~---~~~~~~~----------h~~~v~~~~~s~d~~~  455 (1092)
                      .|...|.+++|+|+|+ +||+|+.|+.|++|++    .+++.+.   ....+..          |.+.|.+++|+|+++ 
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-  121 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN-  121 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS-
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC-
Confidence            4779999999999999 9999999999999999    8876200   1112322          688999999999999 


Q ss_pred             EEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCc----
Q 001362          456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG----  531 (1092)
Q Consensus       456 l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----  531 (1092)
                       +|++++.|+.|++|| .+++.+..+.+|...|.+++|++  ++.+|++++.||.|++||+.+......+..+...    
T Consensus       122 -~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (425)
T 1r5m_A          122 -SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI  197 (425)
T ss_dssp             -EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred             -EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence             899999999999999 78889999999999999999965  6789999999999999999998888877777666    


Q ss_pred             -----------eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC
Q 001362          532 -----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH  600 (1092)
Q Consensus       532 -----------i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg  600 (1092)
                                 +.+++|++++. +++++.    ++.|++||..+++.+..+..|.   ..|.+++|+|+++++++++.|+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~  269 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHH---GPISVLEFNDTNKLLLSASDDG  269 (425)
T ss_dssp             --------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCS---SCEEEEEEETTTTEEEEEETTS
T ss_pred             eeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCC---CceEEEEECCCCCEEEEEcCCC
Confidence                       89999999865 556554    6679999999998888887776   7888888888888888888888


Q ss_pred             cEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccc
Q 001362          601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG  680 (1092)
Q Consensus       601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  680 (1092)
                      .|++||+.+++.+..+.                                                               
T Consensus       270 ~i~i~d~~~~~~~~~~~---------------------------------------------------------------  286 (425)
T 1r5m_A          270 TLRIWHGGNGNSQNCFY---------------------------------------------------------------  286 (425)
T ss_dssp             CEEEECSSSBSCSEEEC---------------------------------------------------------------
T ss_pred             EEEEEECCCCccceEec---------------------------------------------------------------
Confidence            88888876542111110                                                               


Q ss_pred             ccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEE
Q 001362          681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM  760 (1092)
Q Consensus       681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~l  760 (1092)
                                                                                                      
T Consensus       287 --------------------------------------------------------------------------------  286 (425)
T 1r5m_A          287 --------------------------------------------------------------------------------  286 (425)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEe
Q 001362          761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI  839 (1092)
Q Consensus       761 w~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~  839 (1092)
                                                             .|...+.+++|+|++ ++++++ ++.|++||+.+++.+..+
T Consensus       287 ---------------------------------------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~  326 (425)
T 1r5m_A          287 ---------------------------------------GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS  326 (425)
T ss_dssp             ---------------------------------------CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ---------------------------------------CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec
Confidence                                                   144556677777777 666665 688888888888888888


Q ss_pred             cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce--------------------eeEeeccccC--CeEEEEEcCC
Q 001362          840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------VISKLEGHSK--RVTGLVFSDA  897 (1092)
Q Consensus       840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~~spd  897 (1092)
                      ..|...+.+++|+| ++++|++++.||.|++||+.+++                    .+..+.+|..  .|++++|+|+
T Consensus       327 ~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  405 (425)
T 1r5m_A          327 IVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA  405 (425)
T ss_dssp             ECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT
T ss_pred             ccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC
Confidence            88999999999999 89999999999999999999988                    8999999977  9999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCC
Q 001362          898 LNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       898 g~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      +++|++++.||.|++|+++.
T Consensus       406 ~~~l~~~~~dg~i~iw~~~g  425 (425)
T 1r5m_A          406 GNKISVAYSLQEGSVVAIPG  425 (425)
T ss_dssp             SSEEEEEESSSCCEEEECCC
T ss_pred             CceEEEEecCceEEEEeecC
Confidence            99999999999999999863

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=336.52  Aligned_cols=296  Identities=17%  Similarity=0.195  Sum_probs=234.6

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeee-cC-CCCcEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RD-PGVSVNRV  402 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l-~~-h~~~V~~l  402 (1092)
                      .++++|.+|++.|++++|+|+   +||+|+.|++|+|||+.++......                 .+ .+ |...|.++
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~-----------------~~~~~~h~~~v~~v   64 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLID-----------------VLDETAHKKAIRSV   64 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEE-----------------EECTTCCCSCEEEE
T ss_pred             ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEE-----------------EEecCCccCCEEEE
Confidence            467889999999999999997   6899999999999999876422110                 13 34 99999999


Q ss_pred             EECCCCCEEEEEeCCCEEEEEEccCCC----cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC----
Q 001362          403 VWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----  474 (1092)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~----  474 (1092)
                      +|+|++++||+|+.|++|+|||+..+.    .......+.+|...|.+++|+|+++  +|++|+.|++|++||+..    
T Consensus        65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~  142 (330)
T 2hes_X           65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEE  142 (330)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCC
T ss_pred             EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCC
Confidence            999999999999999999999996432    1233446789999999999999999  899999999999999943    


Q ss_pred             CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCceEEEEEccC--CCEEEEEecC
Q 001362          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSAN--GRRLFSCGTS  550 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~~~  550 (1092)
                      .+++..+.+|...|.+++|+|  ++.+|++++.|++|++||....  .....+..|...|.+++|+|+  +.+|++++. 
T Consensus       143 ~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-  219 (330)
T 2hes_X          143 YECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD-  219 (330)
T ss_dssp             CEEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-
T ss_pred             eEEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-
Confidence            256788899999999999965  6689999999999999998766  456678889999999999998  678998886 


Q ss_pred             CCCceeEEEEeCCCC--------eEEEEEee-ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEeCC
Q 001362          551 KEGESFLVEWNESEG--------AIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAG  619 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~--------~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~  619 (1092)
                         ++.|++||+.++        .....+.+ |.   ..|.+++|++++ .+++++.||.|++|+..+++.  .... ..
T Consensus       220 ---D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~  291 (330)
T 2hes_X          220 ---DSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-AL  291 (330)
T ss_dssp             ---TSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SC
T ss_pred             ---CCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cc
Confidence               567999998765        33444443 44   889999999765 899999999999999988743  3222 12


Q ss_pred             CCCC-CCceEEEcc--CCCEEEEEeCCCeEEEEECCC
Q 001362          620 GGLP-ENPRICFNK--NGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       620 ~~~~-~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      .+.. .|.+++|+|  ++++|++++.||.|++|++..
T Consensus       292 ~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          292 CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            2333 689999999  789999999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.8e-37  Score=340.03  Aligned_cols=301  Identities=17%  Similarity=0.274  Sum_probs=244.5

Q ss_pred             ceeeecccCCCCceEEee-----cC-CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCc
Q 001362          325 TVAQTLIEGSSSPMSMDF-----HP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS  398 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~-----sp-dg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~  398 (1092)
                      .+..+|.+|++.|++++|     +| |++ +|++|+.|++|+|||+.+++....            .......+.+|...
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~~   78 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNHF   78 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSSC
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCCc
Confidence            456789999999999999     77 887 799999999999999986543210            00112237899999


Q ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001362          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      |.+++|+|++.+|++|+.|++|++||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|++|++||+.. ...
T Consensus        79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~~  152 (343)
T 2xzm_R           79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-ECK  152 (343)
T ss_dssp             EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CEE
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Cce
Confidence            9999999999999999999999999999987554   6789999999999999999  899999999999999874 444


Q ss_pred             EEEe---cCCcCeEEEeecccCC--------ccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001362          479 YSFE---GHGAPVYSLCPHAKEN--------IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       479 ~~~~---~~~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      ....   +|...|.+++|++...        +.++++++.||.|++||. .......+..|...|.+++|+|+|++|+++
T Consensus       153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg  231 (343)
T 2xzm_R          153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATG  231 (343)
T ss_dssp             EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence            4443   7889999999976532        268999999999999994 445566778899999999999999999999


Q ss_pred             ecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--EEeCC-----
Q 001362          548 GTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG-----  619 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~-----  619 (1092)
                      +.    ++.|++||+.+ ......+. +.   ..|.+++|+|++.++++ +.|+.|++|++.+++...  .+...     
T Consensus       232 s~----dg~v~iwd~~~~~~~~~~~~-~~---~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~  302 (343)
T 2xzm_R          232 GK----DKKLLIWDILNLTYPQREFD-AG---STINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKA  302 (343)
T ss_dssp             ET----TCEEEEEESSCCSSCSEEEE-CS---SCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGB
T ss_pred             cC----CCeEEEEECCCCcccceeec-CC---CcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhh
Confidence            86    67799999944 33433332 23   57999999999887664 457889999998876543  33311     


Q ss_pred             ----CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001362          620 ----GGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       620 ----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                          ++...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus       303 ~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          303 EGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             TTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             hhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence                34456889999999999999999999999997653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2e-36  Score=330.55  Aligned_cols=268  Identities=19%  Similarity=0.254  Sum_probs=241.7

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|.+.|.+++|+|||++|++++.||+|++||+.++..+.   .+..|..+|.+++|+|+++  +|++|+.|++|++||
T Consensus         9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN   83 (304)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence            77899999999999999999999999999999999986554   6788999999999999999  899999999999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEcc-CCCEEEEEec
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSA-NGRRLFSCGT  549 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~-dg~~l~~~~~  549 (1092)
                      +.+++.+..+.+|...|.+++|+|  ++.+|++|+.||+|++||+++... ...+..|...|.+++|+| ++..+++++.
T Consensus        84 ~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence            999999999999999999999965  668999999999999999988744 457788999999999999 6789999986


Q ss_pred             CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001362          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                          ++.|++||+.++.....+..+.  ...+..+.|+|  ++.++++++.|++|++||+.+++++..+..|.  ..|.+
T Consensus       162 ----D~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~  233 (304)
T 2ynn_A          162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF  233 (304)
T ss_dssp             ----TSEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred             ----CCeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEE
Confidence                6679999998887766665433  36788899986  67899999999999999999999999998764  46899


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecC
Q 001362          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNP  674 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~  674 (1092)
                      ++|+|++++|++++.||+|++||..+++....+..+...+.++++.|
T Consensus       234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~  280 (304)
T 2ynn_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP  280 (304)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence            99999999999999999999999999999999999999999999874

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=1.7e-35  Score=379.37  Aligned_cols=523  Identities=13%  Similarity=0.065  Sum_probs=378.0

Q ss_pred             CCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001362          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       333 h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      +...+.+++|||+  + ||.++. +.|.+|++.+++...                    +.+|...|.+++|||||++||
T Consensus        13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la   68 (1045)
T 1k32_A           13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA   68 (1045)
T ss_dssp             CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred             ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence            3557899999964  3 444444 789999999887543                    667999999999999999999


Q ss_pred             EEeCC------CEEEEEEccCCCcccceEEEcccccce-------eEEEEecCCCcEEEEEEeCC------CcEEEEECC
Q 001362          413 VAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDD------KTIKVWDAV  473 (1092)
Q Consensus       413 s~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v-------~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~  473 (1092)
                      +++.+      ..|++|++.+++.    ..+..|...+       ..++|+|||+  ++++++.+      ..|.+||+.
T Consensus        69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~  142 (1045)
T 1k32_A           69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND  142 (1045)
T ss_dssp             EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred             EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence            88643      3799999988752    2577888888       9999999998  67777754      458888887


Q ss_pred             CCceeEEEecCCcCeEEEeecccCCccEEEEEec------------CCeEEEEEcCCCCceEEecCCCCceEEEEEccCC
Q 001362          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV------------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG  541 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg  541 (1092)
                      +++... +..+  ....++|++   | ++++++.            +...++|..........+..+...+.++.|+++ 
T Consensus       143 ~g~~~~-l~~~--~~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-  214 (1045)
T 1k32_A          143 GINFVP-LNLG--PATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-  214 (1045)
T ss_dssp             GTEEEE-CCSC--SCSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred             CCCeEE-ecCC--CcceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence            776543 3323  234566754   5 7888753            345677765444555566788889999999988 


Q ss_pred             CEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC
Q 001362          542 RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  620 (1092)
                      ..++++..    ++.+.+|.... +.....+..+.    .+...+|+|+|++++.+. ++.|++|++.... +..+..+.
T Consensus       215 ~l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~----~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~  284 (1045)
T 1k32_A          215 RIYFITDI----DGFGQIYSTDLDGKDLRKHTSFT----DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGD  284 (1045)
T ss_dssp             EEEEEECT----TSSCEEEEEETTSCSCEECCCCC----SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCC
T ss_pred             EEEEEEec----cCceEEEEEeCCCCcceEecCCC----CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCc
Confidence            44444432    33355555432 33334444443    355679999999988874 8999999995444 33444321


Q ss_pred             ---------CCCCCceEEEc-cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceee
Q 001362          621 ---------GLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV  690 (1092)
Q Consensus       621 ---------~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  690 (1092)
                               +...+..++|+ |||+++++++ ++.+.+|+...+.... +.                             
T Consensus       285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~-----------------------------  333 (1045)
T 1k32_A          285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP-----------------------------  333 (1045)
T ss_dssp             CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----------------------------
T ss_pred             ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----------------------------
Confidence                     11247899999 9999999888 7889999877553221 10                             


Q ss_pred             cCCCCCCCccceeeccccccceeccccccCccccccccCCccccc-cEEEEEEecCCcEEEEeecCCeeE-EEeecCCCc
Q 001362          691 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN-KISRLTYNNGGQAIFALASNGVHL-MWRWPRNDL  768 (1092)
Q Consensus       691 ~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~~~~~dg~i~-lw~~~~~~~  768 (1092)
                                                               .+.. .+..++|+ ||+.++.++.++.+. +|++..   
T Consensus       334 -----------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~---  368 (1045)
T 1k32_A          334 -----------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT---  368 (1045)
T ss_dssp             -----------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT---
T ss_pred             -----------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC---
Confidence                                                     0233 57788899 999888888776666 666432   


Q ss_pred             CcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeE
Q 001362          769 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTAT  847 (1092)
Q Consensus       769 ~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~  847 (1092)
                                         +. ...  +.  ++...+..++|||||++|++++ ++.|++||+.+++....+..|...+.
T Consensus       369 -------------------~~-~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~  424 (1045)
T 1k32_A          369 -------------------GK-AEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT  424 (1045)
T ss_dssp             -------------------CC-EEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred             -------------------CC-ceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence                               22 111  11  2667899999999999999988 58999999999998888878888999


Q ss_pred             EEEEcCCCCCEEEEEeCCC----------cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001362          848 SLAFNPHDNNVIAIGMDDS----------TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       848 ~l~~s~~d~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      +++||| |+++|++++.++          .|++||+.+++ +..+..|...+..++|+|||++|++++.++...+|+...
T Consensus       425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence            999999 899998887654          99999999887 677888988999999999999999999988888887543


Q ss_pred             Cceeee-----eeeec-----------------------CCC-------CcCCCCCceEEEEecCCCEEEE---------
Q 001362          918 WGIQTC-----RSLQT-----------------------PDG-------VMTLAPSETHIQFHKDQTRFLL---------  953 (1092)
Q Consensus       918 ~~~~~~-----~~~~~-----------------------~~~-------~~~~~~~v~~l~~s~dg~~la~---------  953 (1092)
                      ......     ..+..                       ..+       .....+.+..++|+|||+++++         
T Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~  582 (1045)
T 1k32_A          503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA  582 (1045)
T ss_dssp             SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred             cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence            321000     00000                       000       0011235789999999997775         


Q ss_pred             ---E--eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001362          954 ---V--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       954 ---~--~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
                         +  ....|.+||+.+++.... .    ..+.+++|||||++|++++.| .|++||+.+++
T Consensus       583 ~~~~~~~~~~l~~~d~~~~~~~~l-~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          583 YYQGAPEKGVLLKYDVKTRKVTEV-K----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             HHHCCCCCEEEEEEETTTCCEEEE-E----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred             cccccCCCceEEEEECCCCcEEEe-e----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence               1  234688999988875432 2    568899999999999999866 89999998887

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.3e-36  Score=343.29  Aligned_cols=303  Identities=15%  Similarity=0.231  Sum_probs=247.6

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      +|.+.|+|++|||||+ +||+|+ +++++||++.+|+.+.......-.. .....+.......+...|.+++|+|||++|
T Consensus        62 ~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l  138 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSPDGKFL  138 (393)
T ss_dssp             ECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEE
T ss_pred             CCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEECCCCCEE
Confidence            6999999999999999 688876 6899999999998776422100000 000000111112344569999999999999


Q ss_pred             EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001362          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~  491 (1092)
                      |+|+.|++|++||+.+++.+.   .+.+|...|.+++|+|+++  .|++++.|++|++||+.++++...+. +...+.++
T Consensus       139 ~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~  212 (393)
T 1erj_A          139 ATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV  212 (393)
T ss_dssp             EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence            999999999999999886544   6889999999999999999  79999999999999999999888876 56779999


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001362          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      ++++. ++.+|++++.||.|++||++++.....+       ..|...|.+++|+|+|++|++++.    ++.|++||+.+
T Consensus       213 ~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~wd~~~  287 (393)
T 1erj_A          213 AVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQN  287 (393)
T ss_dssp             EECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC--
T ss_pred             EEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEECCC
Confidence            98653 6689999999999999999988766655       467789999999999999999986    66799999875


Q ss_pred             C------------eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001362          565 G------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       565 ~------------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      .            .+...+.+|.   ..|.+++|+|++.++++|+.|+.|++||..+++.+..+..|.  ..|.+++|++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~--~~v~~v~~~~  362 (393)
T 1erj_A          288 ANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVISVAVAN  362 (393)
T ss_dssp             -------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS
T ss_pred             CCCcccccCCCCCcceEEEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC--CCEEEEEecC
Confidence            3            3455667776   889999999999999999999999999999999999888664  4689999886


Q ss_pred             ------CCCEEEEEeCCCeEEEEECCC
Q 001362          633 ------NGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       633 ------~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                            ++++|++++.||+|++|+...
T Consensus       363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          363 GSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CcCcCCCCCEEEEECCCCcEEECcccc
Confidence                  688999999999999999764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.2e-37  Score=348.56  Aligned_cols=290  Identities=15%  Similarity=0.167  Sum_probs=256.0

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|.+.|.+++|+|+|++|++|+.|++|+|||+.+++...   .+.+|...|.+++|+|+|+  +|++|+.|+.|++||
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~  136 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN  136 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence            78999999999999999999999999999999999886544   6789999999999999999  899999999999999


Q ss_pred             CCCCc-------eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-----cCCCCceEEEEEcc
Q 001362          472 AVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYSA  539 (1092)
Q Consensus       472 ~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~~~~~~i~~~~~s~  539 (1092)
                      +.+..       ....+.+|.+.|.++.|.+.. +..|++|+.|++|++||+.++.....+     ..|...+.++++++
T Consensus       137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             CCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence            87532       345678999999999997653 357999999999999999998887766     56778899999977


Q ss_pred             -CCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001362          540 -NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       540 -dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                       +++++++++.    ++.|++||++ .+..+..+.+|.   ..|.+++|+|+++++++|+.||+|++||+.+++.+..+.
T Consensus       216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  288 (380)
T 3iz6_a          216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHE---GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN  288 (380)
T ss_dssp             SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCS---SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred             CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcC---CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence             8899999986    5669999997 557788888888   899999999999999999999999999999999988876


Q ss_pred             CCCC-----CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeec----ccccCceeeeeecCCCccccccccCCce
Q 001362          618 AGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA----GVLSDNLRKLSVNPISTVTGAGIANGSV  688 (1092)
Q Consensus       618 ~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~  688 (1092)
                      .+..     ...+.+++|+|+|+++++|+.||.|++||...++.+..+    .+|...|.+++++               
T Consensus       289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s---------------  353 (380)
T 3iz6_a          289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS---------------  353 (380)
T ss_dssp             CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC---------------
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC---------------
Confidence            5422     234889999999999999999999999999988877665    6788999999996               


Q ss_pred             eecCCCCCCCccceeeccccccceeccc
Q 001362          689 SVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       689 ~~~~~~s~d~~~l~s~~~d~~i~lw~~~  716 (1092)
                             |||+++++++.|+++++|++.
T Consensus       354 -------~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          354 -------SDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             -------SSSSEEEEECTTSCEEEEECC
T ss_pred             -------CCCCEEEEeeCCCCEEEEecC
Confidence                   789999999999999999976

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.4e-36  Score=335.22  Aligned_cols=301  Identities=17%  Similarity=0.204  Sum_probs=239.9

Q ss_pred             cccc-cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001362          732 VKAN-KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  810 (1092)
Q Consensus       732 ~~~~-~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~  810 (1092)
                      +|.. .|..++|+|+|++|++++.|+.|++|++.....                      .....+ ..+|...|.+++|
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------------------~~~~~~-~~~h~~~v~~~~~   69 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------------------ICKSVL-SEGHQRTVRKVAW   69 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------------------EEEEEE-CSSCSSCEEEEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------------------eeeeee-ccccCCcEEEEEE
Confidence            3666 899999999999999999999999999764311                      100001 1248999999999


Q ss_pred             ecCCCEEEEEe-CCeEEEEEcCCc--eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc---eeeEeecc
Q 001362          811 SKNDAYLFSAS-GGVISLYIVMTF--KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEG  884 (1092)
Q Consensus       811 s~dg~~l~~~s-dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~  884 (1092)
                      +|++++|++++ |+.+++||..++  +.+..+.+|...|.+++|+| ++++|++|+.|++|++||+.++   +++..+.+
T Consensus        70 sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  148 (345)
T 3fm0_A           70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS  148 (345)
T ss_dssp             CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred             CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence            99999999998 799999998866  46788999999999999999 8999999999999999999876   45677889


Q ss_pred             ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEE
Q 001362          885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE  963 (1092)
Q Consensus       885 h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd  963 (1092)
                      |...|.+++|+|++++|++++.|++|++||+..++.   .+.....+|..   .|.+++|+|+|++|++ +.|++|++||
T Consensus       149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~---~v~~l~~sp~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHES---TVWSLAFDPSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCC---ceEEEEECCCCCEEEEEeCCCeEEEec
Confidence            999999999999999999999999999999987542   23444556654   7999999999999999 6889999999


Q ss_pred             cCCc---------------eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEE--eeccccccCCCC
Q 001362          964 AEEL---------------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC--RILSTAYLRPTT 1026 (1092)
Q Consensus       964 ~~~~---------------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~--~~~~~~~~~~~~ 1026 (1092)
                      ....               +++..+...|...|.+++|+|++..|++++.|+.|++|+...+....  .+...... ...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-~~~  301 (345)
T 3fm0_A          223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL-HQA  301 (345)
T ss_dssp             EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE-TTS
T ss_pred             cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee-ccc
Confidence            6321               23344344489999999999999999999999999999987653210  01000011 112


Q ss_pred             ccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001362         1027 SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus      1027 ~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
                      |...|.  +++|+|+++.+||+|+.||+|++|++...+.
T Consensus       302 h~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          302 HSQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG  338 (345)
T ss_dssp             SSSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred             ccCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence            455555  7899996557999999999999999976653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7e-36  Score=333.27  Aligned_cols=303  Identities=18%  Similarity=0.264  Sum_probs=260.1

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      .+..+|+||++.|++|+|+|++..+||||+.|++|+|||+.+++....              .....+.+|...|.+++|
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~~~~~   94 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVSDVVI   94 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEEEEEE
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEEEEEE
Confidence            355689999999999999998534899999999999999988764422              112237899999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-EEEec
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEG  483 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~  483 (1092)
                      +|||++|++++.|+.|++|+...+....   ....+...+..+.+++++.  .+++++.|+.+++||....... ....+
T Consensus        95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~  169 (340)
T 4aow_A           95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES  169 (340)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred             CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence            9999999999999999999998875443   5567888899999999999  7999999999999998766543 44567


Q ss_pred             CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001362          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      |...+..++|.+.+...++++++.|+.|++||+.+......+..|...|.+++|+|++++|++++.    ++.|++||+.
T Consensus       170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~  245 (340)
T 4aow_A          170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLN  245 (340)
T ss_dssp             CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred             ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEec
Confidence            999999999988877789999999999999999999999999999999999999999999999986    6679999999


Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-------CCCCCCceEEEccCCCE
Q 001362          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-------GGLPENPRICFNKNGTL  636 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~~~  636 (1092)
                      +++.+..+..+    ..+.+++|+|++. +++++.|+.|++||++++..+..+..+       .+...|.+++|+|+|++
T Consensus       246 ~~~~~~~~~~~----~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  320 (340)
T 4aow_A          246 EGKHLYTLDGG----DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT  320 (340)
T ss_dssp             TTEEEEEEECS----SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred             cCceeeeecCC----ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence            99999888764    4799999999865 566677999999999998887766532       34567899999999999


Q ss_pred             EEEEeCCCeEEEEECCCCc
Q 001362          637 LAVIANENRIKILETPESN  655 (1092)
Q Consensus       637 l~~~~~dg~i~iw~~~~~~  655 (1092)
                      |++|+.||.|+||++.+|.
T Consensus       321 l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          321 LFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEETTSCEEEEEEEC--
T ss_pred             EEEEeCCCEEEEEeCCCcC
Confidence            9999999999999998764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.4e-36  Score=333.05  Aligned_cols=324  Identities=13%  Similarity=0.163  Sum_probs=272.5

Q ss_pred             CCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001362          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       333 h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      |.+.|.+++|+|||+ +++++..++.+.+|+........                   ...+|...|.+++|+|++++|+
T Consensus         8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~   67 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY   67 (337)
T ss_dssp             EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred             cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence            355899999999998 57777666666666544322221                   1447999999999999999999


Q ss_pred             EEeCCCEEEEEEccCCCcccceEEEc--ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc--eeEEEecCCcCe
Q 001362          413 VAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV  488 (1092)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v  488 (1092)
                      +++ |+.|++||+.+++.......+.  +|...|.+++|+|+++  ++++++.|+.|++||+.+++  ....+..|...|
T Consensus        68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i  144 (337)
T 1gxr_A           68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC  144 (337)
T ss_dssp             EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred             EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence            998 9999999999887655544554  7999999999999999  89999999999999999887  667788899999


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001362          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1092)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1092)
                      .+++|++  ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++.    ++.|++||+.+++.+
T Consensus       145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~  218 (337)
T 1gxr_A          145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL  218 (337)
T ss_dssp             EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred             EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence            9999965  6789999999999999999999888888889999999999999999999986    667999999999988


Q ss_pred             EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001362          569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  648 (1092)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  648 (1092)
                      ..+.. .   ..+.+++|+|+++++++++.++.|++||+.+++... +..  +...+.+++|+|+++++++++.||.|++
T Consensus       219 ~~~~~-~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~  291 (337)
T 1gxr_A          219 QQHDF-T---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHL--HESCVLSLKFAYCGKWFVSTGKDNLLNA  291 (337)
T ss_dssp             EEEEC-S---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECC--CSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             eeecC-C---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcC--CccceeEEEECCCCCEEEEecCCCcEEE
Confidence            77653 3   689999999999999999999999999999887653 333  3456899999999999999999999999


Q ss_pred             EECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccccc
Q 001362          649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  728 (1092)
Q Consensus       649 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~  728 (1092)
                      |++.+++.....                                                                    
T Consensus       292 ~~~~~~~~~~~~--------------------------------------------------------------------  303 (337)
T 1gxr_A          292 WRTPYGASIFQS--------------------------------------------------------------------  303 (337)
T ss_dssp             EETTTCCEEEEE--------------------------------------------------------------------
T ss_pred             EECCCCeEEEEe--------------------------------------------------------------------
Confidence            999876544211                                                                    


Q ss_pred             CCccccccEEEEEEecCCcEEEEeecCCeeEEEee
Q 001362          729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  763 (1092)
Q Consensus       729 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~  763 (1092)
                         .+...+.+++|+|+++.+++++.||.+++|++
T Consensus       304 ---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          304 ---KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ---cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence               14556788888899888888888999998885

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.5e-35  Score=325.91  Aligned_cols=297  Identities=21%  Similarity=0.275  Sum_probs=253.1

Q ss_pred             eecCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEEccCCCcc--cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001362          391 LVRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  467 (1092)
                      .+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+....  .....+.+|...|.+++|+|+++  +|++|+.|++|
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v   89 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL   89 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence            488999999999999965 89999999999999999754321  23446889999999999999999  89999999999


Q ss_pred             EEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC------C
Q 001362          468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN------G  541 (1092)
Q Consensus       468 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d------g  541 (1092)
                      ++||+.+++.+..+.+|...|.+++|++  ++.+|++++.|++|++||++. .....+..|...+.++.++|.      +
T Consensus        90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~  166 (319)
T 3frx_A           90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDS  166 (319)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------C
T ss_pred             EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence            9999999999999999999999999955  668999999999999999964 566677888999999999985      4


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC
Q 001362          542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG  621 (1092)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  621 (1092)
                      ..+++++.    ++.|++||+.+++....+.+|.   ..|.+++|+|++++|++++.||+|++||+.+++.+..+..+  
T Consensus       167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--  237 (319)
T 3frx_A          167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--  237 (319)
T ss_dssp             CEEEEEET----TSCEEEEETTTTEEEEEECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--
T ss_pred             cEEEEEeC----CCEEEEEECCcchhheeecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--
Confidence            47888876    5669999999999999999888   89999999999999999999999999999999999888765  


Q ss_pred             CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001362          622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1092)
Q Consensus       622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1092)
                       ..+.+++|+|++.++++++.+ .+++|++.....+..+..+...                                   
T Consensus       238 -~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~-----------------------------------  280 (319)
T 3frx_A          238 -DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG-----------------------------------  280 (319)
T ss_dssp             -SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT-----------------------------------
T ss_pred             -CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc-----------------------------------
Confidence             358999999999999988765 5999998865444333211000                                   


Q ss_pred             eeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecC
Q 001362          702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR  765 (1092)
Q Consensus       702 ~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~  765 (1092)
                                                 ....+...+.+++|+|+|++|++++.||.|++|++..
T Consensus       281 ---------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          281 ---------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             ---------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             ---------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence                                       0012456788999999999999999999999999754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-37  Score=355.18  Aligned_cols=353  Identities=13%  Similarity=0.186  Sum_probs=273.9

Q ss_pred             CCceEEeecCCCceEEEEE----------cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          335 SSPMSMDFHPVQHTLLLVG----------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg----------~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ..|.+++|+|+|+.++|+|          +.|+.|+|||+.+++.....                 ....|...|.+++|
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~-----------------~~~~~~~~v~~~~~   75 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI-----------------ASLQVDSKFNDLDW   75 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS-----------------CCCCCSSCEEEEEE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE-----------------EEEecCCceEEEEE
Confidence            4799999999997689999          88999999999987632110                 02358899999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCc-ccceEEEcccccceeEEEEecC-CCcEEEEEEeCCCcEEEEECCCCc------
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS------  476 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~------  476 (1092)
                      +|++++|++++.|+.|++||+.+... ......+.+|...|.+++|+|+ ++  +|++++.|+.|++||+.+++      
T Consensus        76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~  153 (416)
T 2pm9_A           76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSNY  153 (416)
T ss_dssp             CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred             CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccccc
Confidence            99999999999999999999987211 1234467899999999999999 66  79999999999999999887      


Q ss_pred             eeE---EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCceEEEEEccCC-CEEEE
Q 001362          477 RTY---SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANG-RRLFS  546 (1092)
Q Consensus       477 ~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~dg-~~l~~  546 (1092)
                      ...   .+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+..+      ...+.+++|+|++ .++++
T Consensus       154 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  232 (416)
T 2pm9_A          154 TPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT  232 (416)
T ss_dssp             CCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred             cccccccccCCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence            333   34679999999999764 2579999999999999999998888877776      6789999999998 57777


Q ss_pred             EecCCCCceeEEEEeCCCC-eEEEEEe-eccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCC
Q 001362          547 CGTSKEGESFLVEWNESEG-AIKRTYQ-GLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  623 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~-~~~~~~~-~~~~~~~~v~~~~~~p-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~  623 (1092)
                      ++.++ .++.|++||+.++ ..+..+. +|.   ..|.+++|+| +++++++++.||.|++||+.+++.+..+..+.  .
T Consensus       233 ~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~--~  306 (416)
T 2pm9_A          233 ATGSD-NDPSILIWDLRNANTPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG--N  306 (416)
T ss_dssp             EECCS-SSCCCCEEETTSTTSCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS--S
T ss_pred             EECCC-CCceEEEEeCCCCCCCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC--C
Confidence            76532 1237999999986 5666776 666   8999999999 89999999999999999999999999988664  4


Q ss_pred             CCceEEEccCC-CEEEEEeCCCeEEEEECCCCceeeeccc--ccCceeeeeecCCCcccc---------------ccccC
Q 001362          624 ENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGV--LSDNLRKLSVNPISTVTG---------------AGIAN  685 (1092)
Q Consensus       624 ~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---------------~~~~~  685 (1092)
                      .|.+++|+|++ .++++++.|+.|++|++.+.........  .........+.+.....+               .....
T Consensus       307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (416)
T 2pm9_A          307 WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPS  386 (416)
T ss_dssp             CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCS
T ss_pred             ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCc
Confidence            68999999998 8999999999999999987754332211  000000001111000000               00111


Q ss_pred             CceeecCCCCCCCccceeeccccccceecccc
Q 001362          686 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1092)
Q Consensus       686 ~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~  717 (1092)
                      ..++|    +|||+++++++.|+.|++|++.+
T Consensus       387 ~~~~~----s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          387 PAAHW----AFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             CCCEE----ETTTEEECBCTTSSCBCCBCCCC
T ss_pred             cceEE----eeCCeEEEEeCCCCeEEEEEecc
Confidence            13344    78999999999999999999763

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.6e-35  Score=323.84  Aligned_cols=291  Identities=20%  Similarity=0.287  Sum_probs=260.3

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      .+.+|...|.+++|+|+|++||+|+.|+.|++|++.+++...   .+.+|...|.+++|+|+++  +|++++.|+.|++|
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw   92 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW   92 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence            378999999999999999999999999999999999886554   6789999999999999999  89999999999999


Q ss_pred             ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001362          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      |+.+++.+..+.+|...|.+++|++  ++.+|++++.||.|++||+++.+....+..+..++.+++|+|+++++++++. 
T Consensus        93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-  169 (312)
T 4ery_A           93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-  169 (312)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence            9999999999999999999999965  6689999999999999999999988899999999999999999999999986 


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001362          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                         ++.|++||+.+++.+..+....  ...+..++|+|+++++++++.|+.|++||+.+++.+..+..+..........+
T Consensus       170 ---d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
T 4ery_A          170 ---DGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF  244 (312)
T ss_dssp             ---TSCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred             ---CCcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence               5669999999998887765443  46799999999999999999999999999999999998877654333333444


Q ss_pred             c-cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec--cc
Q 001362          631 N-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--AE  707 (1092)
Q Consensus       631 s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~d  707 (1092)
                      + +++.++++++.||.|++||+.+++.+..+.+|...+.+++++                      |+++.+++++  .|
T Consensus       245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----------------------p~~~~l~s~~~~~d  302 (312)
T 4ery_A          245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH----------------------PTENIIASAALEND  302 (312)
T ss_dssp             ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------SSSSEEEEEECTTT
T ss_pred             EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec----------------------CcCCceEEEEccCC
Confidence            4 678999999999999999999999999999999999999997                      6777888876  68


Q ss_pred             cccceeccc
Q 001362          708 NKSEVEKPL  716 (1092)
Q Consensus       708 ~~i~lw~~~  716 (1092)
                      ++|++|+.+
T Consensus       303 ~~i~~W~~d  311 (312)
T 4ery_A          303 KTIKLWKSD  311 (312)
T ss_dssp             CCEEEEECC
T ss_pred             ccEEEecCC
Confidence            999999854

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-35  Score=323.55  Aligned_cols=306  Identities=15%  Similarity=0.182  Sum_probs=233.1

Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001362          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  641 (1092)
                      +.+.+..+.+|.   ..|.+++|+|+  +|++|+.|++|++||+..+  .....+....+...|.+++|+|++++|++++
T Consensus         3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s   77 (330)
T 2hes_X            3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS   77 (330)
T ss_dssp             CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred             ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence            456677888888   89999999987  8999999999999999875  3445553322456799999999999999999


Q ss_pred             CCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCc
Q 001362          642 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS  721 (1092)
Q Consensus       642 ~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~  721 (1092)
                      .|++|++|+........                                                               
T Consensus        78 ~D~~v~iw~~~~~~~~~---------------------------------------------------------------   94 (330)
T 2hes_X           78 FDSTVSIWAKEESADRT---------------------------------------------------------------   94 (330)
T ss_dssp             TTSCEEEEEC----------------------------------------------------------------------
T ss_pred             CCCcEEEEEcccCcCcc---------------------------------------------------------------
Confidence            99999999975321000                                                               


Q ss_pred             cccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCC
Q 001362          722 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS  801 (1092)
Q Consensus       722 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~  801 (1092)
                                            ...+ .                                         ...  +  .+|
T Consensus        95 ----------------------~~~~-~-----------------------------------------~~~--~--~~h  106 (330)
T 2hes_X           95 ----------------------FEMD-L-----------------------------------------LAI--I--EGH  106 (330)
T ss_dssp             ----------------------CCCE-E-----------------------------------------EEE--E--C--
T ss_pred             ----------------------ccce-e-----------------------------------------EEE--E--cCC
Confidence                                  0000 0                                         000  0  037


Q ss_pred             CCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC----ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001362          802 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  876 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  876 (1092)
                      ...|.+++|+|++++|++++ |++|++||+..    .+++..+.+|...|.+++|+| ++.+|++|+.|++|++||..++
T Consensus       107 ~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             --CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCC
Confidence            77888888888888888887 78899998842    356778899999999999999 8999999999999999999876


Q ss_pred             --eeeEeeccccCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCce---eeeeeeecCCC-CcCCCCCceEEEEecCC
Q 001362          877 --EVISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGI---QTCRSLQTPDG-VMTLAPSETHIQFHKDQ  948 (1092)
Q Consensus       877 --~~~~~l~~h~~~V~~l~~spd--g~~l~s~s~Dg~i~iwd~~~~~~---~~~~~~~~~~~-~~~~~~~v~~l~~s~dg  948 (1092)
                        +++..+.+|.+.|.+++|+|+  +.+|++++.|++|++||+..+..   ....+.....+ |.   ..|.+++|++++
T Consensus       186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~  262 (330)
T 2hes_X          186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG  262 (330)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS
T ss_pred             CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC
Confidence              678899999999999999999  77999999999999999975421   11123333333 43   379999999877


Q ss_pred             CEEEEEeCCcEEEEEcCCce--eeeeeccCCCC-CEEEEEEec--CCCEEEEEECCCcEEEEEcCC
Q 001362          949 TRFLLVHETHLAIYEAEELT--CLKQWFPISSV-PISQATFSC--DCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus       949 ~~la~~~d~~i~lwd~~~~~--~~~~~~~~h~~-~v~~l~fs~--dg~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
                      .++..+.|+.|++||..+++  .......+|.. .|.+++|+|  |+++|++|+.||+|++|++..
T Consensus       263 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          263 LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            54444789999999998774  34444467876 999999999  789999999999999999865

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=3.2e-34  Score=367.47  Aligned_cols=529  Identities=10%  Similarity=0.017  Sum_probs=372.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC------CCcEE
Q 001362          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIK  468 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~  468 (1092)
                      +...+.+.+|||  +.||.++. +.|++|++.+++..    .+.+|...+.+++|||||+  .|++++.      +..|+
T Consensus        13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~   83 (1045)
T 1k32_A           13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY   83 (1045)
T ss_dssp             CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred             ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence            456789999995  58888876 68999999887532    4678999999999999999  5665543      34799


Q ss_pred             EEECCCCceeEEEecCCcCe-------EEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEE
Q 001362          469 VWDAVTGSRTYSFEGHGAPV-------YSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRM  535 (1092)
Q Consensus       469 vwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~  535 (1092)
                      +||+.+++ ...+..|...+       ..++|+|  ||+++++++.+      ..|..|++..+....... .  ....+
T Consensus        84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~--~~~~~  157 (1045)
T 1k32_A           84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL-G--PATHI  157 (1045)
T ss_dssp             EEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS-C--SCSEE
T ss_pred             EEECCCCC-eEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEEecC-C--Cccee
Confidence            99998876 57788888888       8899965  66677777754      357777776654433222 2  23457


Q ss_pred             EEccCCCEEEEEecCCC--------CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001362          536 AYSANGRRLFSCGTSKE--------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       536 ~~s~dg~~l~~~~~~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~  607 (1092)
                      +|+| | .+++++...+        +.....+|....+.....+.+|.   ..+.++.|+++ ..+++++.++.+.+|.+
T Consensus       158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~---~~v~~~~~s~d-~l~~~~~~dg~~~l~~~  231 (1045)
T 1k32_A          158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGH-RIYFITDIDGFGQIYST  231 (1045)
T ss_dssp             EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred             eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC---CcccceEEeCC-EEEEEEeccCceEEEEE
Confidence            7999 8 7777643211        12234445332223444556666   88999999998 56667788899999976


Q ss_pred             CC-CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCC
Q 001362          608 NK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  686 (1092)
Q Consensus       608 ~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  686 (1092)
                      .. +.....+..+.   .+...+|+|||++++.+. ++.|++|+.... .+..+..+....                   
T Consensus       232 ~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~-------------------  287 (1045)
T 1k32_A          232 DLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLES-------------------  287 (1045)
T ss_dssp             ETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCB-------------------
T ss_pred             eCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccc-------------------
Confidence            53 33444444332   367789999999998884 789999998433 222222100000                   


Q ss_pred             ceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEe-cCCcEEEEeecCCeeEEEeecC
Q 001362          687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPR  765 (1092)
Q Consensus       687 ~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~lw~~~~  765 (1092)
                                            ..                  ....+...+..++|+ |||+.+++++ ++.+.+|+...
T Consensus       288 ----------------------~~------------------~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~  326 (1045)
T 1k32_A          288 ----------------------PE------------------DRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG  326 (1045)
T ss_dssp             ----------------------CC------------------SEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred             ----------------------cc------------------cccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence                                  00                  000144567789999 9999888877 77888876543


Q ss_pred             CCcCcCcccccccCCccccCCCCCceeeecCCCCCCCC-CeeEEEEecCCCEEEEEeC-CeEE-EEEcCCceeeEEecCC
Q 001362          766 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE-AVPCFALSKNDAYLFSASG-GVIS-LYIVMTFKTILTIMPP  842 (1092)
Q Consensus       766 ~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~-~v~~~~~s~dg~~l~~~sd-g~i~-iwd~~~~~~~~~~~~~  842 (1092)
                      .                      . ...  +.  .+.. .+..++|+ ||+.++++++ +.+. +||+.+++.. .+.+|
T Consensus       327 ~----------------------~-~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~  377 (1045)
T 1k32_A          327 T----------------------Y-VLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN  377 (1045)
T ss_dssp             S----------------------B-EEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC
T ss_pred             C----------------------c-eEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCC
Confidence            2                      1 111  11  2555 78899999 9999999885 6688 8899877654 44477


Q ss_pred             CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC----------cEEE
Q 001362          843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA----------QIFV  912 (1092)
Q Consensus       843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg----------~i~i  912 (1092)
                      ...+..++|+| |+++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++          .|++
T Consensus       378 ~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l  456 (1045)
T 1k32_A          378 LGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  456 (1045)
T ss_dssp             CCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             ccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence            78999999999 899999999999999999999998888878999999999999999999887654          8999


Q ss_pred             EEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCcee----------------------
Q 001362          913 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC----------------------  969 (1092)
Q Consensus       913 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~----------------------  969 (1092)
                      ||+.+++.      .....+..   .+..++|+|||++|+. +.++...+|+......                      
T Consensus       457 ~d~~~g~~------~~l~~~~~---~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (1045)
T 1k32_A          457 YDMEGRKI------FAATTENS---HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK  527 (1045)
T ss_dssp             EETTTTEE------EECSCSSS---BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred             EECCCCcE------EEeeCCCc---ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence            99998651      11222222   4778999999999988 4445555554322111                      


Q ss_pred             --------------------eeeeccCCCCCEEEEEEecCCCEEEE-------------EECCCcEEEEEcCCCceEEee
Q 001362          970 --------------------LKQWFPISSVPISQATFSCDCRMVFT-------------SFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       970 --------------------~~~~~~~h~~~v~~l~fs~dg~~l~t-------------~~~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
                                          ....+..|.+.+..++|+|||+++++             ...+..|.+||+.+++.....
T Consensus       528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~  607 (1045)
T 1k32_A          528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK  607 (1045)
T ss_dssp             CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE
T ss_pred             cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee
Confidence                                01112346778999999999987875             123457888999988754222


Q ss_pred             ccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001362         1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1017 ~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
                      .            .  ...++++| |+.+|++++.+ .|++||+....
T Consensus       608 ~------------~--v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          608 N------------N--LTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             E------------E--EEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred             c------------C--cceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence            1            1  23678999 68999998766 89999996544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.7e-35  Score=332.48  Aligned_cols=290  Identities=17%  Similarity=0.228  Sum_probs=248.4

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccc------------------cceeEEEEecCCCc
Q 001362          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV------------------GNVNDLAFSAPCKQ  455 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~------------------~~v~~~~~s~d~~~  455 (1092)
                      +|...|.+++|||||++||+|+ ++.+++|++.+++.+.   .+..|.                  ..|.+++|+|||+ 
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-  136 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-  136 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence            5999999999999999999986 6789999999987654   343332                  2499999999999 


Q ss_pred             EEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEE
Q 001362          456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM  535 (1092)
Q Consensus       456 l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~  535 (1092)
                       +|++|+.|++|++||+.+++.+..+.+|...|.+++|++  ++.+|++++.|++|++||+++++....+. +...+.++
T Consensus       137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~  212 (393)
T 1erj_A          137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV  212 (393)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred             -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence             899999999999999999999999999999999999965  66899999999999999999887766665 44578999


Q ss_pred             EEcc-CCCEEEEEecCCCCceeEEEEeCCCCeEEEEE-------eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001362          536 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTY-------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       536 ~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~-------~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~  607 (1092)
                      +++| +++++++++.    ++.|++||..++..+..+       .+|.   ..|.+++|+|+++++++++.|+.|++||+
T Consensus       213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~d~~v~~wd~  285 (393)
T 1erj_A          213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHK---DSVYSVVFTRDGQSVVSGSLDRSVKLWNL  285 (393)
T ss_dssp             EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            9999 8999999986    566999999999888776       3444   89999999999999999999999999999


Q ss_pred             CCCc------------eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCC
Q 001362          608 NKVQ------------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI  675 (1092)
Q Consensus       608 ~~~~------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~  675 (1092)
                      .+..            +...+..|  ...|.+++|+|++.+|++++.|+.|++||..+++.+..+.+|...|.++++++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~  363 (393)
T 1erj_A          286 QNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG  363 (393)
T ss_dssp             ---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred             CCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC
Confidence            7643            33444444  446899999999999999999999999999999999999999999999999864


Q ss_pred             CccccccccCCceeecCCCCCCCccceeeccccccceecccc
Q 001362          676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1092)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~  717 (1092)
                      ...                +|+++.+++++.|+++++|++..
T Consensus       364 ~~~----------------~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          364 SSL----------------GPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             CTT----------------CTTCEEEEEEETTSEEEEEEEEE
T ss_pred             cCc----------------CCCCCEEEEECCCCcEEECcccc
Confidence            322                57899999999999999999763

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-36  Score=344.92  Aligned_cols=382  Identities=13%  Similarity=0.151  Sum_probs=287.8

Q ss_pred             eecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeee-cCCCCcEEEEEECC-CCCEEEEEeCCC
Q 001362          341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RDPGVSVNRVVWSP-DGSLLGVAYSKH  418 (1092)
Q Consensus       341 ~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l-~~h~~~V~~l~~sp-dg~~las~~~d~  418 (1092)
                      .|+|+++ .+++++      .|+ .+++.+..                   + .+|.+.|.+++|+| ++++||+|+.|+
T Consensus        34 ~f~~~~~-~~~~~~------~w~-~~g~~~~~-------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg   86 (437)
T 3gre_A           34 EFGPIQE-IVRSPN------MGN-LRGKLIAT-------------------LMENEPNSITSSAVSPGETPYLITGSDQG   86 (437)
T ss_dssp             GGCCCCC-CCCCCC------GGG-CCCCEEEE-------------------ECTTTTSCEEEEEEECSSSCEEEEEETTS
T ss_pred             hcCCccc-cccccc------ccc-ccceEEee-------------------eccCCCCceEEEEECCCCCCEEEEecCCc
Confidence            5889998 456544      377 44555543                   4 78999999999999 999999999999


Q ss_pred             EEEEEEccC---CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC---CCceeEEEecCCcCeEEEe
Q 001362          419 IVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLC  492 (1092)
Q Consensus       419 ~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~~~  492 (1092)
                      +|+|||+.+   +........+ +|...|.+++|+|+++  +|++|+.|++|++||++   +++.+..+.+|  .+..+.
T Consensus        87 ~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~  161 (437)
T 3gre_A           87 VIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKIN  161 (437)
T ss_dssp             EEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEE
T ss_pred             eEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEE
Confidence            999999987   5534333333 5999999999999999  89999999999999994   77877777766  677777


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE--EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001362          493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT  570 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~--~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  570 (1092)
                      +.+.+                              +...+.++.  +++++.++++++.    ++.|++||+.+++.+..
T Consensus       162 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~  207 (437)
T 3gre_A          162 LKNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERLQI  207 (437)
T ss_dssp             GGGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEEEE
T ss_pred             ccCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeeEE
Confidence            75531                              112333444  6789999999986    66799999999999999


Q ss_pred             Eee--ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc----cCCCEEEEEeCCC
Q 001362          571 YQG--LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN----KNGTLLAVIANEN  644 (1092)
Q Consensus       571 ~~~--~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~dg  644 (1092)
                      +.+  |.   ..|.+++|+|+++++++|+.||.|++||+++++.+..+..... ..|.+++|+    |++.++++++.||
T Consensus       208 ~~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~dg  283 (437)
T 3gre_A          208 IENSPRH---GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKT  283 (437)
T ss_dssp             EECCGGG---CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred             EccCCCC---CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEEcCCC
Confidence            988  55   8999999999999999999999999999999999988863322 368899665    4688999999999


Q ss_pred             eEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccc
Q 001362          645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  724 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~  724 (1092)
                      .|++||+.+++.+..+.++...+..+.++|.                                                 
T Consensus       284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------  314 (437)
T 3gre_A          284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPI-------------------------------------------------  314 (437)
T ss_dssp             EEEEEETTTTEEEEEEESSSSCCCGGGGSCB-------------------------------------------------
T ss_pred             cEEEEEcCCCcEEEEEEcCCCCCccceeccc-------------------------------------------------
Confidence            9999999999888877776665544444321                                                 


Q ss_pred             ccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCC
Q 001362          725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA  804 (1092)
Q Consensus       725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~  804 (1092)
                                           ++.+    .+.                                      .+.+..|...
T Consensus       315 ---------------------~~~l----~~~--------------------------------------~~~~~~~~~~  331 (437)
T 3gre_A          315 ---------------------EKGL----EEL--------------------------------------NFCGIRSLNA  331 (437)
T ss_dssp             ---------------------CSSG----GGC--------------------------------------CCCCCCSGGG
T ss_pred             ---------------------cccc----ccc--------------------------------------eecccccCCc
Confidence                                 1110    000                                      0000127788


Q ss_pred             eeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCC---CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeE
Q 001362          805 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  880 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~  880 (1092)
                      |.+++|+ ++++|++++ |+.|++||+.+++....+.+|.   ..+....+++ ...+++..        |+...+....
T Consensus       332 v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~  401 (437)
T 3gre_A          332 LSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVD  401 (437)
T ss_dssp             GCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC--------
T ss_pred             eEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccC
Confidence            9999999 778899887 7999999999999999888764   3456666776 55454443        3344455556


Q ss_pred             eeccccCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 001362          881 KLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWD  914 (1092)
Q Consensus       881 ~l~~h~~~V~~l~~spd--g~~l~s~s~Dg~i~iwd  914 (1092)
                      ....|.+.|++++|+++  +.+|++++.||.|+||+
T Consensus       402 ~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          402 DSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            66779999999999998  78999999999999995

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.4e-35  Score=341.70  Aligned_cols=346  Identities=13%  Similarity=0.120  Sum_probs=284.1

Q ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001362          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  477 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~  477 (1092)
                      .+++++|+|+|++|++++.|+.|++||+.+++...   .+..| ..+....|+++++  +|++|+.|+.|++||+.+++.
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~  131 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQ  131 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEE
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcce
Confidence            45579999999999999999999999999876655   23445 4455668899999  899999999999999999999


Q ss_pred             eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001362          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                      ...+.+|...|.+++|++  ++.+|++++.||.|++||+.+.+....+..|...|.+++|+|++++|++++.    ++.|
T Consensus       132 ~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~v  205 (420)
T 3vl1_A          132 REIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGTI  205 (420)
T ss_dssp             EEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSCE
T ss_pred             eeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCcE
Confidence            988889999999999965  6689999999999999999999999999999999999999999999999986    5569


Q ss_pred             EEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE
Q 001362          558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL  637 (1092)
Q Consensus       558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  637 (1092)
                      ++||+.+++.+..+..+..+...+.++++.|.+...+                     ..  .+...+.+++|+|+++++
T Consensus       206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------~~--~~~~~v~~~~~s~~~~~l  262 (420)
T 3vl1_A          206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL---------------------HE--ISTSKKNNLEFGTYGKYV  262 (420)
T ss_dssp             EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC---------------------GG--GCCCCCCTTCSSCTTEEE
T ss_pred             EEeECCCCceeEEeecCCCCCCCccEEEEecCCccee---------------------ee--cccCcccceEEcCCCCEE
Confidence            9999999999999998766668899998887643220                     01  112457889999999999


Q ss_pred             EEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccc
Q 001362          638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1092)
Q Consensus       638 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~  717 (1092)
                      ++++.||.|++||+.+++....+.                                                        
T Consensus       263 ~~~~~dg~i~i~d~~~~~~~~~~~--------------------------------------------------------  286 (420)
T 3vl1_A          263 IAGHVSGVITVHNVFSKEQTIQLP--------------------------------------------------------  286 (420)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC--------------------------------------------------------
T ss_pred             EEEcCCCeEEEEECCCCceeEEcc--------------------------------------------------------
Confidence            999999999999987553221100                                                        


Q ss_pred             ccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCC
Q 001362          718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT  797 (1092)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~  797 (1092)
                                                                                                      
T Consensus       287 --------------------------------------------------------------------------------  286 (420)
T 3vl1_A          287 --------------------------------------------------------------------------------  286 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCeeEEEEecCCC-EEEEEe-CCeEEEEEcCCcee-eEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEc
Q 001362          798 DSNSQEAVPCFALSKNDA-YLFSAS-GGVISLYIVMTFKT-ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA  873 (1092)
Q Consensus       798 ~~~~~~~v~~~~~s~dg~-~l~~~s-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~  873 (1092)
                       ..|...|.+++|+|+++ ++++++ ||.|++||+.+++. +..+.. |...+.++.+.  ++++|++++.||.|++|++
T Consensus       287 -~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          287 -SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             -CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEE
T ss_pred             -cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEec
Confidence             01566788888888888 888877 68899999887654 566665 56677888654  5789999999999999999


Q ss_pred             CCc---------eeeEeeccccCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCC
Q 001362          874 RSS---------EVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       874 ~~~---------~~~~~l~~h~~~V~~l~~spdg~---~l~s~s~Dg~i~iwd~~~  917 (1092)
                      ...         .....+.+|.+.|.+++|+|+++   .+++++.+|.+.+|+++.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          364 SDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             CCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             cCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            873         22344667899999999999999   788888899999999875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.9e-34  Score=321.04  Aligned_cols=321  Identities=14%  Similarity=0.141  Sum_probs=266.7

Q ss_pred             ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC
Q 001362          439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS  518 (1092)
Q Consensus       439 ~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  518 (1092)
                      .|.++|.+++|+|||+  +++++..++.+.+|+...........+|...|.+++|++  ++.++++++ ||.|++||+.+
T Consensus         7 ~~~~~v~~~~~s~dg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~   81 (337)
T 1gxr_A            7 MGSKPAYSFHVTADGQ--MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISH   81 (337)
T ss_dssp             EEEEECCEEEECSSSC--EEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTS
T ss_pred             ccCCceeEEEECCCCC--EEEeecCCCcEeccccCCccccceeccCCCceEEEEEec--CCcEEEEcC-CCeEEEEECCC
Confidence            3667899999999999  777777777777776665555555568999999999964  678999998 99999999987


Q ss_pred             CCceE---Eec--CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCC
Q 001362          519 LGARV---DYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKD  591 (1092)
Q Consensus       519 ~~~~~---~~~--~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~  591 (1092)
                      .....   .+.  .+...+.+++|+|+++++++++.    ++.|++||..+++  ....+..|.   ..+.+++|+|+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~  154 (337)
T 1gxr_A           82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE----ASTLSIWDLAAPTPRIKAELTSSA---PACYALAISPDSK  154 (337)
T ss_dssp             TTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES----SSEEEEEECCCC--EEEEEEECSS---SCEEEEEECTTSS
T ss_pred             CCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCCcceeeecccCC---CceEEEEECCCCC
Confidence            65322   222  67889999999999999999876    5679999999887  555666666   8899999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeee
Q 001362          592 QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS  671 (1092)
Q Consensus       592 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~  671 (1092)
                      ++++++.||.|++||+.+++.+..+..+.  ..+.+++|+|+++++++++.||.|++||+.+++.....           
T Consensus       155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-----------  221 (337)
T 1gxr_A          155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-----------  221 (337)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------
T ss_pred             EEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-----------
Confidence            99999999999999999999988887653  46899999999999999999999999998754221110           


Q ss_pred             ecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEE
Q 001362          672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA  751 (1092)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~  751 (1092)
                                                                                                      
T Consensus       222 --------------------------------------------------------------------------------  221 (337)
T 1gxr_A          222 --------------------------------------------------------------------------------  221 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEc
Q 001362          752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV  830 (1092)
Q Consensus       752 ~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~  830 (1092)
                                                                      .+...+.+++|+|+++++++++ ++.|++||+
T Consensus       222 ------------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~  253 (337)
T 1gxr_A          222 ------------------------------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV  253 (337)
T ss_dssp             ------------------------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ------------------------------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence                                                            0334566777888888888777 578888888


Q ss_pred             CCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcE
Q 001362          831 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI  910 (1092)
Q Consensus       831 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i  910 (1092)
                      .+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|
T Consensus       254 ~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i  330 (337)
T 1gxr_A          254 NKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKA  330 (337)
T ss_dssp             TSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             CCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeE
Confidence            77665 45677899999999999 8999999999999999999999887554 488999999999999999999999999


Q ss_pred             EEEEc
Q 001362          911 FVWDV  915 (1092)
Q Consensus       911 ~iwd~  915 (1092)
                      ++|++
T Consensus       331 ~iw~~  335 (337)
T 1gxr_A          331 TVYEV  335 (337)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.3e-36  Score=343.07  Aligned_cols=350  Identities=12%  Similarity=0.113  Sum_probs=283.0

Q ss_pred             CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      +.+++++|+|+|+ +|++|+.|+.|++||+.+++....                   +..| ..+...+|+|++++||+|
T Consensus        57 ~~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~  115 (420)
T 3vl1_A           57 DAGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILG  115 (420)
T ss_dssp             BCCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEE
T ss_pred             ccccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEE
Confidence            3466899999999 589999999999999988765432                   3344 455566899999999999


Q ss_pred             eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeec
Q 001362          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  494 (1092)
                      +.|+.|++||+.+++...   .+.+|.+.|.+++|+|+++  +|++++.|++|++||+.+++.+..+.+|...|.+++|+
T Consensus       116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  190 (420)
T 3vl1_A          116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII  190 (420)
T ss_dssp             ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred             ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence            999999999999876443   5679999999999999999  89999999999999999999999999999999999996


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001362          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1092)
                      +  ++.+|++++.||.|++||+++.+....+..   +...+.++++.+++...+                         .
T Consensus       191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------------------~  243 (420)
T 3vl1_A          191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL-------------------------H  243 (420)
T ss_dssp             T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC-------------------------G
T ss_pred             C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee-------------------------e
Confidence            5  678999999999999999999888777764   445677777766543221                         1


Q ss_pred             eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEE
Q 001362          572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILE  650 (1092)
Q Consensus       572 ~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~  650 (1092)
                      ..+   ...+.+++|+|+++++++++.||.|++||+.+++....+... +...+.+++|+|+++ ++++++.||.|++||
T Consensus       244 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd  319 (420)
T 3vl1_A          244 EIS---TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWD  319 (420)
T ss_dssp             GGC---CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             ecc---cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence            111   267888899999999999999999999999999888777542 335689999999999 999999999999999


Q ss_pred             CCCCce-eeeccc-ccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccc-cc
Q 001362          651 TPESNS-VDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS-LL  727 (1092)
Q Consensus       651 ~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~-~~  727 (1092)
                      +.++.. +..+.. +...+.++.+                       ++++++++++.|+.+++|++.......... ..
T Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~  376 (420)
T 3vl1_A          320 LRSPECPVGEFLINEGTPINNVYF-----------------------AAGALFVSSGFDTSIKLDIISDPESERPAIEFE  376 (420)
T ss_dssp             TTCTTSCSEEEEESTTSCEEEEEE-----------------------ETTEEEEEETTTEEEEEEEECCTTCCSCEECTT
T ss_pred             cCCCcCchhhhhccCCCCceEEEe-----------------------CCCCEEEEecCCccEEEEeccCCCCCccceecc
Confidence            998743 566665 5556665544                       467889999999999999987532221110 00


Q ss_pred             --cCCccccccEEEEEEecCCc---EEEEeecCCeeEEEeec
Q 001362          728 --LPSKVKANKISRLTYNNGGQ---AIFALASNGVHLMWRWP  764 (1092)
Q Consensus       728 --~~~~~~~~~i~~l~~s~~g~---~l~~~~~dg~i~lw~~~  764 (1092)
                        .....+...|.+++|+|+++   .+++++.+|.+.+|++.
T Consensus       377 ~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          377 TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             SCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred             CccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence              01134778899999999999   89999999999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.9e-35  Score=358.38  Aligned_cols=299  Identities=18%  Similarity=0.252  Sum_probs=253.1

Q ss_pred             eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001362          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      ....|++|++.|++++|+|++..+|++|+.|++|+|||+.++.....              .....+.+|...|.+++|+
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s  439 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLS  439 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEEC
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEEC
Confidence            44578999999999999998755899999999999999987543211              0112377999999999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE---e
Q 001362          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---E  482 (1092)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~---~  482 (1092)
                      |+|++|++|+.|++|+|||+.++....   .+.+|...|.+++|+|+++  .|++|+.|++|++||..........   .
T Consensus       440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  514 (694)
T 3dm0_A          440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE  514 (694)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence            999999999999999999999986554   6789999999999999999  7999999999999997655433222   4


Q ss_pred             cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001362          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      +|...|.+++|++......+++++.||+|++||++.......+..|...|.+++|+|++++|++++.    ++.|++||+
T Consensus       515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~  590 (694)
T 3dm0_A          515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL  590 (694)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEET
T ss_pred             CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence            6889999999988665579999999999999999999988899999999999999999999999986    667999999


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC-----------------CCCC
Q 001362          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------------LPEN  625 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v  625 (1092)
                      .+++.+..+..+    ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+..                 ...+
T Consensus       591 ~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (694)
T 3dm0_A          591 AEGKKLYSLEAN----SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC  665 (694)
T ss_dssp             TTTEEEECCBCS----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCE
T ss_pred             CCCceEEEecCC----CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEe
Confidence            999988776543    5799999999988777665 56699999999998887754311                 1125


Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECC
Q 001362          626 PRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      .+++|+|+|++|++|+.||.|++|++.
T Consensus       666 ~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          666 TSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             eeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            689999999999999999999999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.5e-34  Score=330.47  Aligned_cols=328  Identities=16%  Similarity=0.223  Sum_probs=281.0

Q ss_pred             eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001362          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      ..+.|.+|.+.|.. +++++|+ ++++|+.||+|++||+.+++.+..                   +.+|...|.+++|+
T Consensus       110 ~~~~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~  168 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR  168 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE
T ss_pred             eeEEecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec
Confidence            34678999987643 3555687 689999999999999999988765                   77899999999997


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001362          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1092)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  485 (1092)
                        +++|++|+.|++|++||+.+++.+.   .+.+|...|.+++|+  ++  .+++|+.|++|++||+.+++.+..+.+|.
T Consensus       169 --~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~  239 (445)
T 2ovr_B          169 --DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHV  239 (445)
T ss_dssp             --TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred             --CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCc
Confidence              6799999999999999999986554   688999999999996  44  69999999999999999999999999999


Q ss_pred             cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001362          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      ..|.++++    ++.++++++.||.|++||+++......+..+...+.+++|  ++.++++++.    ++.|++||..++
T Consensus       240 ~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~  309 (445)
T 2ovr_B          240 AAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETG  309 (445)
T ss_dssp             SCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTC
T ss_pred             ccEEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCC
Confidence            99999988    5678999999999999999999988899999999999998  8899999986    566999999999


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC-CCCCCceEEEccCCCEEEEEeCCC
Q 001362          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      +.+..+.+|.   ..+.++.++  ++++++++.||.|++||+.+++.+..+..+. +...|.+++|+  ++++++++.||
T Consensus       310 ~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg  382 (445)
T 2ovr_B          310 NCIHTLTGHQ---SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG  382 (445)
T ss_dssp             CEEEEECCCC---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred             CEEEEEcCCc---ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC
Confidence            9999998887   788877774  6799999999999999999999999887632 44568888885  68999999999


Q ss_pred             eEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccc
Q 001362          645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  724 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~  724 (1092)
                      .|++|++.+++.+..+...                                                             
T Consensus       383 ~v~iwd~~~~~~~~~~~~~-------------------------------------------------------------  401 (445)
T 2ovr_B          383 TVKLWDLKTGEFIRNLVTL-------------------------------------------------------------  401 (445)
T ss_dssp             EEEEEETTTCCEEEEEEEC-------------------------------------------------------------
T ss_pred             eEEEEECCCCceeeeeecc-------------------------------------------------------------
Confidence            9999999988665544210                                                             


Q ss_pred             ccccCCccccccEEEEEEecCCcEEEEeecCCe----eEEEeecC
Q 001362          725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR  765 (1092)
Q Consensus       725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~----i~lw~~~~  765 (1092)
                          ....+...|.+++|+|++..+++++.||.    +.+||+..
T Consensus       402 ----~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          402 ----ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             ----TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ----ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence                00126677899999999999999999987    88888764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-36  Score=346.83  Aligned_cols=337  Identities=15%  Similarity=0.229  Sum_probs=263.8

Q ss_pred             CceEEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001362          579 NSVSVVHFDTAKD-QILAA----------GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1092)
Q Consensus       579 ~~v~~~~~~p~~~-~l~~~----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  647 (1092)
                      ..+.+++|+|+++ +++++          +.|+.|++||+.++.....+....+...|.+++|+|++++|++++.||.|+
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE   92 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence            3577889999987 88888          899999999999876332222122345699999999999999999999999


Q ss_pred             EEECCCC----ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccc
Q 001362          648 ILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC  723 (1092)
Q Consensus       648 iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~  723 (1092)
                      +|++.+.    .....+.+                                                             
T Consensus        93 vw~~~~~~~~~~~~~~~~~-------------------------------------------------------------  111 (416)
T 2pm9_A           93 LYSTNEANNAINSMARFSN-------------------------------------------------------------  111 (416)
T ss_dssp             EECCSSTTSCCCEEEECCC-------------------------------------------------------------
T ss_pred             EeecccccccccchhhccC-------------------------------------------------------------
Confidence            9998862    22222222                                                             


Q ss_pred             cccccCCccccccEEEEEEecC-CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCC
Q 001362          724 QSLLLPSKVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ  802 (1092)
Q Consensus       724 ~~~~~~~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~  802 (1092)
                               |...|.+++|+|+ +..+++++.||.|++|++.........       ....        .....  ..|.
T Consensus       112 ---------h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~~~--------~~~~~--~~~~  165 (416)
T 2pm9_A          112 ---------HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN-------YTPL--------TPGQS--MSSV  165 (416)
T ss_dssp             ---------SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT-------CCCB--------CCCCS--CCSS
T ss_pred             ---------CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc-------cccc--------ccccc--cCCC
Confidence                     5566777788887 777888888888888876543210000       0000        00001  1488


Q ss_pred             CCeeEEEEecC-CCEEEEEe-CCeEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCCCEEEEEeCCC---cEEEE
Q 001362          803 EAVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGMDDS---TILIY  871 (1092)
Q Consensus       803 ~~v~~~~~s~d-g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~~dg---~v~iw  871 (1092)
                      ..|.+++|+|+ +.++++++ |+.|++||+.+++.+..+..+      ...+.+++|+|++..++++++.|+   .|++|
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~  245 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW  245 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred             CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence            89999999999 78888887 799999999999999998876      788999999994447999999999   99999


Q ss_pred             EcCCc-eeeEeec-cccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCC
Q 001362          872 NARSS-EVISKLE-GHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  948 (1092)
Q Consensus       872 d~~~~-~~~~~l~-~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg  948 (1092)
                      |+.++ +.+..+. +|...|++++|+| ++++|++++.|+.|++||+.+++.     +....+|..   .|.+++|+|++
T Consensus       246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-----~~~~~~~~~---~v~~~~~s~~~  317 (416)
T 2pm9_A          246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ-----LSQFPARGN---WCFKTKFAPEA  317 (416)
T ss_dssp             ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE-----EEEEECSSS---CCCCEEECTTC
T ss_pred             eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc-----ceeecCCCC---ceEEEEECCCC
Confidence            99986 6778888 8999999999999 999999999999999999998653     333334443   79999999999


Q ss_pred             -CEEEE-EeCCcEEEEEcCCceeeeeec----------------------------------cCCCCCEEEEEEecCCCE
Q 001362          949 -TRFLL-VHETHLAIYEAEELTCLKQWF----------------------------------PISSVPISQATFSCDCRM  992 (1092)
Q Consensus       949 -~~la~-~~d~~i~lwd~~~~~~~~~~~----------------------------------~~h~~~v~~l~fs~dg~~  992 (1092)
                       .+|++ +.|+.|++||+.++.......                                  ..|..++.+++|||||++
T Consensus       318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  397 (416)
T 2pm9_A          318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL  397 (416)
T ss_dssp             TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE
T ss_pred             CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE
Confidence             78888 688999999998776433210                                  115678889999999999


Q ss_pred             EEEEECCCcEEEEEcCCC
Q 001362          993 VFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       993 l~t~~~Dg~i~vwd~~~~ 1010 (1092)
                      |++++.|++|+||++.+.
T Consensus       398 la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          398 VQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             ECBCTTSSCBCCBCCCCC
T ss_pred             EEEeCCCCeEEEEEeccC
Confidence            999999999999999875

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.1e-34  Score=318.43  Aligned_cols=289  Identities=20%  Similarity=0.222  Sum_probs=240.3

Q ss_pred             eeecCCCCcEEEEEE-----CC-CCCEEEEEeCCCEEEEEEccCCCcc----cceEEEcccccceeEEEEecCCCcEEEE
Q 001362          390 ALVRDPGVSVNRVVW-----SP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVI  459 (1092)
Q Consensus       390 ~~l~~h~~~V~~l~~-----sp-dg~~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~  459 (1092)
                      ..+.+|.+.|++++|     ++ |+++||+|+.|++|++||+.+++..    .....+.+|...|.+++|+|++.  +++
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~   92 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAI   92 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEE
Confidence            358899999999999     77 9999999999999999999865421    23346789999999999999999  899


Q ss_pred             EEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEE
Q 001362          460 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMA  536 (1092)
Q Consensus       460 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~  536 (1092)
                      +|+.|++|++||+.+++.+..+.+|...|.+++|++  ++.+|++++.|++|++||+... ......   .+...+.+++
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~  169 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVR  169 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEE
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeee
Confidence            999999999999999999999999999999999965  6789999999999999999743 333322   5677899999


Q ss_pred             EccCC----------CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001362          537 YSANG----------RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD  606 (1092)
Q Consensus       537 ~s~dg----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd  606 (1092)
                      |+|++          .++++++.    ++.|++|| .++.....+.+|.   ..|.+++|+|++++|++|+.||.|++||
T Consensus       170 ~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~---~~v~~~~~s~~g~~l~sgs~dg~v~iwd  241 (343)
T 2xzm_R          170 YSPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHE---SNVNHLSISPNGKYIATGGKDKKLLIWD  241 (343)
T ss_dssp             ECCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             eccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCcc---ccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence            99987          68888876    66799999 4567777888877   8999999999999999999999999999


Q ss_pred             CC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceee--ecc-----------cccCceeeeee
Q 001362          607 MN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----------VLSDNLRKLSV  672 (1092)
Q Consensus       607 ~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~-----------~~~~~v~~~~~  672 (1092)
                      +. .......+...   ..|.+++|+|++.+++++ .|+.+++|++.++....  .+.           +|...+.+++|
T Consensus       242 ~~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  317 (343)
T 2xzm_R          242 ILNLTYPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW  317 (343)
T ss_dssp             SSCCSSCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEE
T ss_pred             CCCCcccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEE
Confidence            94 44444444322   348999999999888755 57789999998765432  222           45666777777


Q ss_pred             cCCCccccccccCCceeecCCCCCCCccceeeccccccceecccc
Q 001362          673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1092)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~  717 (1092)
                      +                      |+|+.+++++.|+.|++|++..
T Consensus       318 s----------------------p~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          318 N----------------------ALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             C----------------------SSSCCEEEEETTSEEEEEEEEE
T ss_pred             C----------------------CCCCeEEEecCCceEEEEEEEc
Confidence            5                      7899999999999999999764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=7.8e-34  Score=331.56  Aligned_cols=305  Identities=17%  Similarity=0.230  Sum_probs=266.9

Q ss_pred             cceeeecccCCCCc-eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001362          324 KTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V-~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l  402 (1092)
                      .....+|.+|.+.| .|++|  +++ ++++|+.||+|++||+.+++.+..                   +.+|.+.|.++
T Consensus       111 ~~~~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l  168 (464)
T 3v7d_B          111 VPQRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWAL  168 (464)
T ss_dssp             CCEEEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEE
T ss_pred             CcceEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEE
Confidence            34567899998886 56666  455 699999999999999999987765                   77899999999


Q ss_pred             EECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec--CCCcEEEEEEeCCCcEEEEECCCCce---
Q 001362          403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSR---  477 (1092)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~---  477 (1092)
                      +|+|++ +|++|+.||+|++||+.+++.+.   .+.+|...|.+++|++  ++.  ++++|+.|++|++||+.++..   
T Consensus       169 ~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~  242 (464)
T 3v7d_B          169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPD  242 (464)
T ss_dssp             EECSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC--
T ss_pred             EEcCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccc
Confidence            999988 99999999999999999986554   7889999999999995  556  899999999999999988753   


Q ss_pred             --------------------eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEE
Q 001362          478 --------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAY  537 (1092)
Q Consensus       478 --------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~  537 (1092)
                                          +..+.+|...|.++..    ++.++++++.||.|++||+.+.+....+..|...|.+++|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~  318 (464)
T 3v7d_B          243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY  318 (464)
T ss_dssp             ----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             ccccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence                                5567889999988843    5679999999999999999999999999999999999999


Q ss_pred             ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001362          538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                      +|+++++++++.    ++.|++||..+++.+..+.+|.   ..|.++.|+  +.++++++.||.|++||+.++.......
T Consensus       319 ~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~  389 (464)
T 3v7d_B          319 DHERKRCISASM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH  389 (464)
T ss_dssp             ETTTTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cCCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec
Confidence            999999999986    5669999999999999999888   899999997  5799999999999999999988776665


Q ss_pred             CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeee-cccccCceeeeeec
Q 001362          618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA-AGVLSDNLRKLSVN  673 (1092)
Q Consensus       618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~  673 (1092)
                      ..   ..+..++|+++++++++++ ||.|++||+.+++.+.. ...+...|.+++++
T Consensus       390 ~~---~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~  442 (464)
T 3v7d_B          390 HT---NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK  442 (464)
T ss_dssp             CT---TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred             CC---CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence            32   3467889999999999998 89999999999998875 67788889888886

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.9e-34  Score=327.41  Aligned_cols=298  Identities=15%  Similarity=0.138  Sum_probs=249.1

Q ss_pred             cceeeecccCCCCceEEeecCCC-ceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001362          324 KTVAQTLIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg-~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l  402 (1092)
                      ......+.+|.+.|++++|+|+| + +|++|+.||.|+|||+.+++......                 ..+|...|.++
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------~~~h~~~v~~~  124 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQ-----------------GMGPGDAITGM  124 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEEC-----------------CCSTTCBEEEE
T ss_pred             cceEEeccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeee-----------------cCCcCCceeEE
Confidence            45667889999999999999999 6 79999999999999999887765411                 34799999999


Q ss_pred             EECC-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001362          403 VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  481 (1092)
Q Consensus       403 ~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~  481 (1092)
                      +|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++  +|++++.|+.|++||+ +++.+..+
T Consensus       125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~  200 (383)
T 3ei3_B          125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE  200 (383)
T ss_dssp             EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred             EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence            9999 789999999999999999996 33332222234558899999999999  8999999999999998 68889999


Q ss_pred             ecCCcCeEEEeecccCCcc-EEEEEecCCeEEEEEcCC----CCceEEecCCCCceEEEEEcc-CCCEEEEEecCCCCce
Q 001362          482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGES  555 (1092)
Q Consensus       482 ~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~  555 (1092)
                      .+|...|.+++|++  ++. ++++++.|+.|++||+++    ......+ .+...|.+++|+| ++++|++++.    ++
T Consensus       201 ~~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~  273 (383)
T 3ei3_B          201 KLHKAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN  273 (383)
T ss_dssp             ECSSSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred             ccCCCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence            99999999999965  556 999999999999999997    3344444 5788999999999 9999999976    66


Q ss_pred             eEEEEeCCCCeEEEEEeecccc--------------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC
Q 001362          556 FLVEWNESEGAIKRTYQGLQLQ--------------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG  621 (1092)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~~~~--------------~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  621 (1092)
                      .|++||+.+++....+.+|...              ...+..++|+|++++  +++.|+.|++||+.+++.+..+..+.+
T Consensus       274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~  351 (383)
T 3ei3_B          274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA  351 (383)
T ss_dssp             EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred             cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence            7999999999887777765411              133445666777666  777999999999999999999987655


Q ss_pred             CCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001362          622 LPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      ...+..++|+|++++|++++ |+.|++|++.+
T Consensus       352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            55677789999999999997 89999999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.4e-34  Score=328.47  Aligned_cols=299  Identities=13%  Similarity=0.128  Sum_probs=257.3

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCC------eeEEeeeeeeecccccceeeEeeecCCCCc
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ------KLFIRNFKVWDIGACSMLFKTALVRDPGVS  398 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~------~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~  398 (1092)
                      .+...+.+|.+.|++++|+|  + +|++|+.||.|+|||+.+++      .+..                   +.+|...
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------------------~~~h~~~   64 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYS-------------------HFVHKSG   64 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEE-------------------EECCTTC
T ss_pred             hhhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceE-------------------EecCCCc
Confidence            45678899999999999999  4 68999999999999999987      3332                   6689999


Q ss_pred             EEEEEECCC----C---CEEEEEeCCCEEEEEEccCCCccc--ceEEEccc-----ccceeEEEEe----cCCCcEE-EE
Q 001362          399 VNRVVWSPD----G---SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAH-----VGNVNDLAFS----APCKQIS-VI  459 (1092)
Q Consensus       399 V~~l~~spd----g---~~las~~~d~~i~iwd~~~~~~~~--~~~~~~~h-----~~~v~~~~~s----~d~~~l~-l~  459 (1092)
                      |.+++|+|+    |   ++|++++.|+.|++||+.+++...  ....+..|     ...|.+++|+    |+++  + |+
T Consensus        65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~  142 (397)
T 1sq9_A           65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLV  142 (397)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEE
T ss_pred             EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEE
Confidence            999999999    9   999999999999999999887510  02367778     5899999999    9999  7 99


Q ss_pred             EEeCCCcEEEEECCC------CceeE-----EEec-------CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc
Q 001362          460 TCGDDKTIKVWDAVT------GSRTY-----SFEG-------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA  521 (1092)
Q Consensus       460 s~~~d~~i~vwd~~~------~~~~~-----~~~~-------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  521 (1092)
                      +++.|+.|++||+.+      ++.+.     .+.+       |...|.+++|++  ++ ++++++.||.|++||+++.+.
T Consensus       143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~  219 (397)
T 1sq9_A          143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRP  219 (397)
T ss_dssp             EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEE
T ss_pred             EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCce
Confidence            999999999999998      77776     7744       889999999965  66 999999999999999999888


Q ss_pred             eEEecC---C---CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee-------------ccccCCceE
Q 001362          522 RVDYDA---P---GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------LQLQHNSVS  582 (1092)
Q Consensus       522 ~~~~~~---~---~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------~~~~~~~v~  582 (1092)
                      ...+..   |   ...+.+++|+|++++|++++.++ ..+.|++||+.+++.+..+.+             |.   ..|.
T Consensus       220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~  295 (397)
T 1sq9_A          220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVM  295 (397)
T ss_dssp             EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEE
T ss_pred             eEEEeccccccccCCccceEEECCCCCEEEEEecCC-CCceEEEEECCCCcccceeccCcccccccccccccC---CcEE
Confidence            888888   7   88999999999999999998620 017899999999999999988             66   8999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe------CC-------------CCCCCCceEEEccCC---------
Q 001362          583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID------AG-------------GGLPENPRICFNKNG---------  634 (1092)
Q Consensus       583 ~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~~---------  634 (1092)
                      +++|+|++++|++++.||.|++||+.+++.+..+.      .+             .+...|.+++|+|++         
T Consensus       296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~  375 (397)
T 1sq9_A          296 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADL  375 (397)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTT
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccc
Confidence            99999999999999999999999999999999988      43             014569999999998         


Q ss_pred             -CEEEEEeCCCeEEEEECCCC
Q 001362          635 -TLLAVIANENRIKILETPES  654 (1092)
Q Consensus       635 -~~l~~~~~dg~i~iw~~~~~  654 (1092)
                       ++|++++.||.|++|++.++
T Consensus       376 ~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          376 NESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             SCEEEEEETTTEEEEEEEEC-
T ss_pred             cceEEEecCCCcEEEEEcCCC
Confidence             79999999999999998765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-36  Score=347.22  Aligned_cols=340  Identities=10%  Similarity=0.060  Sum_probs=249.2

Q ss_pred             eeecccCCCCceEEeecCCC---------ceEEEE-------------------EcCCCcEEEEecCCCCeeEEeeeeee
Q 001362          327 AQTLIEGSSSPMSMDFHPVQ---------HTLLLV-------------------GTNVGDTGLWDVNSGQKLFIRNFKVW  378 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg---------~~llas-------------------g~~d~~v~iwd~~~~~~~~~~~~~~~  378 (1092)
                      ..++. +.+.|++|+|+|++         + +||+                   |+.|++|+|||+.+++.....     
T Consensus       127 ~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~-----  199 (524)
T 2j04_B          127 GFIYN-VGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK-----  199 (524)
T ss_dssp             EEEEE-CCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEEE-----
T ss_pred             eEEEE-CCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE-----
Confidence            33444 45689999999886         4 4555                   456788999999887643210     


Q ss_pred             ecccccceeeEeeecCCCCcEEEEEECCC------CCEEEEEeCCCEEEEEEccCCCcc--------cceEEEcccccce
Q 001362          379 DIGACSMLFKTALVRDPGVSVNRVVWSPD------GSLLGVAYSKHIVQLYAYHGGSDA--------RQQLEIDAHVGNV  444 (1092)
Q Consensus       379 d~~~~~~~~~~~~l~~h~~~V~~l~~spd------g~~las~~~d~~i~iwd~~~~~~~--------~~~~~~~~h~~~v  444 (1092)
                                ...+.+|.+.|.+++|+|+      +.+||+++.||+|+|||+.++...        .....+.+|...|
T Consensus       200 ----------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v  269 (524)
T 2j04_B          200 ----------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLI  269 (524)
T ss_dssp             ----------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCE
T ss_pred             ----------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCE
Confidence                      1125568899999999997      579999999999999999877532        1233678999999


Q ss_pred             eEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEecCCcCeEEEeecccCCc-cEEEEEecCCeEEEEEcCCCCce
Q 001362          445 NDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGAR  522 (1092)
Q Consensus       445 ~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~  522 (1092)
                      ++++|++++   .|++|+.||+|++||++++. ....+.+|...|.++++...+++ .+|++++.||+|++||+++.+..
T Consensus       270 ~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~  346 (524)
T 2j04_B          270 TTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT  346 (524)
T ss_dssp             EEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred             EEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence            999999864   59999999999999999874 45678999999999954335566 79999999999999999887765


Q ss_pred             EEecCCC--CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC
Q 001362          523 VDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH  600 (1092)
Q Consensus       523 ~~~~~~~--~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg  600 (1092)
                      ..+..+.  ..+.+++|+|+++.+++++.    ++.|++||++++.++..+.+|.   +.|.+++|+|+++.|++|+.||
T Consensus       347 ~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~~~~l~gH~---~~V~sva~Sp~g~~l~Sgs~Dg  419 (524)
T 2j04_B          347 KTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFAVHPLVSRE---TTITAIGVSRLHPMVLAGSADG  419 (524)
T ss_dssp             CEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTCCEEEEECS---SCEEEEECCSSCCBCEEEETTT
T ss_pred             cccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccccceeeecCC---CceEEEEeCCCCCeEEEEECCC
Confidence            5554443  35788999999999988865    5679999999999888888887   8999999999999999999999


Q ss_pred             cEEEEECCCCceEEEEeCC---CCCCCCceEEEccCCCEEEEEeCCCeEEEEECC-CCceeeecccccCceeeeeecCCC
Q 001362          601 VIKIWDMNKVQLLTTIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPIS  676 (1092)
Q Consensus       601 ~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~  676 (1092)
                      +|++||+..+ .+......   .....+..++|+|+++.+. ...  .+.+|... ++..+..+.+|...|.+++|+|++
T Consensus       420 tv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~  495 (524)
T 2j04_B          420 SLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETS  495 (524)
T ss_dssp             EEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCST
T ss_pred             EEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCC
Confidence            9999998654 21111100   0111356889999998553 222  23344332 456777888999999999998542


Q ss_pred             ccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001362          677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~  716 (1092)
                                         +.+..+++|+.+|.|+||++.
T Consensus       496 -------------------~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          496 -------------------AGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             -------------------TTTTEEEEECTTSEEEEEECS
T ss_pred             -------------------CccHHHHhhccCceEEEEEcc
Confidence                               235689999999999999976

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-33  Score=317.91  Aligned_cols=292  Identities=12%  Similarity=0.099  Sum_probs=259.4

Q ss_pred             eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001362          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      ....|.+|++.|++++|+|+|+ +|++|+.||.|+|||+.+++.+..                   +.+|...|.+++|+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~   83 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVD   83 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred             ccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEc
Confidence            3467899999999999999998 689999999999999999987765                   67899999999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-----CcEEEEECCCCc----
Q 001362          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGS----  476 (1092)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~~----  476 (1092)
                      |++++|++++.|+.|++||+.+++.+.   .+. |...|.+++|+|+++  ++++++.+     +.|++||+.++.    
T Consensus        84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~  157 (369)
T 3zwl_B           84 CFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHE  157 (369)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCcccee
Confidence            999999999999999999999987665   344 888999999999999  78889888     999999988664    


Q ss_pred             -------eeEEEecCCc--CeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCCEEEE
Q 001362          477 -------RTYSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFS  546 (1092)
Q Consensus       477 -------~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1092)
                             .+..+..|..  .+.+++|++  ++.+|++++.||.|++||+.+ ......+..+...|.+++|+|++++|++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  235 (369)
T 3zwl_B          158 LTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT  235 (369)
T ss_dssp             EEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE
Confidence                   3455566666  899999965  668999999999999999998 6667788889999999999999999999


Q ss_pred             EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC--------------cEEEEECCCCce
Q 001362          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------------VIKIWDMNKVQL  612 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg--------------~i~iwd~~~~~~  612 (1092)
                      ++.    ++.|++||+.+++.+..+.. .   ..+..++|+|+++++++++.++              .+++||..+++.
T Consensus       236 ~~~----d~~i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  307 (369)
T 3zwl_B          236 SSR----DTNSFLVDVSTLQVLKKYET-D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE  307 (369)
T ss_dssp             EET----TSEEEEEETTTCCEEEEEEC-S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred             ecC----CceEEEEECCCCceeeeecC-C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence            976    66799999999999888873 3   6899999999999999999888              899999999999


Q ss_pred             EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001362          613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      +..+..+.  ..|.+++|+|++++|++++.||.|++|++..+.
T Consensus       308 ~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          308 IGRVQGHF--GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             EEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             hhheeccc--CcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence            99988664  469999999999999999999999999998653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-33  Score=310.25  Aligned_cols=293  Identities=20%  Similarity=0.269  Sum_probs=255.9

Q ss_pred             cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ....++|.+|.+.|++++| |+++ +|++|+.||.|+|||+.+++....                   +..|...|.+++
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~   66 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC   66 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence            3677899999999999999 9998 689999999999999988776654                   556899999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001362          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  483 (1092)
                      |+|++++|++++.|+.|++|++...........+.+|...|.+++|  +++  .+++++.|+.|++||  .++.+..+..
T Consensus        67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~  140 (313)
T 3odt_A           67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA  140 (313)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred             ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence            9999999999999999999999876554555578899999999999  456  799999999999999  7888899999


Q ss_pred             CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001362          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      |...+.++++.+. ++.++++++.||.|++||  .......+.. +...+.+++|+|++. +++++.    ++.|++||.
T Consensus       141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~  212 (313)
T 3odt_A          141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDM  212 (313)
T ss_dssp             CSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEET
T ss_pred             CCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEEC
Confidence            9999999999763 557999999999999999  3445555555 788999999999999 777765    667999999


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001362          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      .+++.+..+.+|.   ..|.+++|+|++ .+++++.||.|++||+.+++.+..+..+.  ..+.+++|+|+++ +++++.
T Consensus       213 ~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~~~~~~  285 (313)
T 3odt_A          213 HTGDVLRTYEGHE---SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA--ISIWSVDCMSNGD-IIVGSS  285 (313)
T ss_dssp             TTCCEEEEEECCS---SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS--SCEEEEEECTTSC-EEEEET
T ss_pred             CchhhhhhhhcCC---ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC--ceEEEEEEccCCC-EEEEeC
Confidence            9999999999887   899999999999 69999999999999999999999988764  3689999999998 667999


Q ss_pred             CCeEEEEECCCCceee
Q 001362          643 ENRIKILETPESNSVD  658 (1092)
Q Consensus       643 dg~i~iw~~~~~~~~~  658 (1092)
                      ||.|++|++.+++...
T Consensus       286 dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          286 DNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             TSCEEEEESCGGGCCC
T ss_pred             CCcEEEEeCCCCceee
Confidence            9999999999775543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.2e-33  Score=322.28  Aligned_cols=319  Identities=18%  Similarity=0.280  Sum_probs=271.0

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+.   .+.+|.+.|.+++|+  +.  ++++|+.|++|++||
T Consensus       114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd  185 (445)
T 2ovr_B          114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN  185 (445)
T ss_dssp             EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred             ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence            6789887643 355579999999999999999999987655   678999999999998  44  799999999999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      +.+++.+..+.+|...|.++.++    +..+++++.||.|++||+.+++....+..+...+.++++  +++++++++.  
T Consensus       186 ~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~--  257 (445)
T 2ovr_B          186 AETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY--  257 (445)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred             CCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence            99999999999999999999983    368999999999999999999999899999999999998  7889999886  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001362          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                        ++.|++||..+++.+..+.+|.   ..|.++.|  ++.++++++.||.|++||+.+++.+..+..+..  .+.++.+ 
T Consensus       258 --dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~-  327 (445)
T 2ovr_B          258 --DFMVKVWDPETETCLHTLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL-  327 (445)
T ss_dssp             --TSCEEEEEGGGTEEEEEECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE-
T ss_pred             --CCEEEEEECCCCcEeEEecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE-
Confidence              5669999999999999998887   88999999  788999999999999999999999988876533  4555554 


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccc
Q 001362          632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1092)
Q Consensus       632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1092)
                       +++++++++.||.|++||+.+++.+..+..+                                                
T Consensus       328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------------  358 (445)
T 2ovr_B          328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGP------------------------------------------------  358 (445)
T ss_dssp             -ETTEEEEEETTSCEEEEETTTCCEEEEECST------------------------------------------------
T ss_pred             -eCCEEEEEeCCCeEEEEECCCCcEEEEEccC------------------------------------------------
Confidence             5779999999999999998765433222100                                                


Q ss_pred             eeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCce
Q 001362          712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF  791 (1092)
Q Consensus       712 lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~  791 (1092)
                                                                                                      
T Consensus       359 --------------------------------------------------------------------------------  358 (445)
T 2ovr_B          359 --------------------------------------------------------------------------------  358 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEe-----cCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001362          792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDD  865 (1092)
Q Consensus       792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~d  865 (1092)
                             ..|...|.+++|+  ++++++++ ||.|++||+.+++.+..+     ..|...|.+++|+| ++.++|+|+.|
T Consensus       359 -------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~d  428 (445)
T 2ovr_B          359 -------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRN  428 (445)
T ss_dssp             -------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSS
T ss_pred             -------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccC
Confidence                   0155667777774  57788887 789999999999888887     46788999999999 89999999999


Q ss_pred             Cc----EEEEEcCC
Q 001362          866 ST----ILIYNARS  875 (1092)
Q Consensus       866 g~----v~iwd~~~  875 (1092)
                      |+    |.+||+..
T Consensus       429 g~~~~~l~v~df~~  442 (445)
T 2ovr_B          429 GTEETKLLVLDFDV  442 (445)
T ss_dssp             SSSCCEEEEEECCC
T ss_pred             CCCccEEEEEECCC
Confidence            98    99999875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.4e-34  Score=321.08  Aligned_cols=300  Identities=12%  Similarity=0.209  Sum_probs=249.6

Q ss_pred             CcceeeecccCCCCceEEeecCCCceEEEEEcC---CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001362          323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1092)
Q Consensus       323 p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~---d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V  399 (1092)
                      |......+.+|.+.|++++|+|+++.++++|+.   |+.|+|||+.+++.....                  ..+|...|
T Consensus         7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v   68 (357)
T 3i2n_A            7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPI   68 (357)
T ss_dssp             CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCE
T ss_pred             hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcE
Confidence            445566778999999999999999878889887   999999999998765431                  22589999


Q ss_pred             EEEEECCC---CCEEEEEeCCCEEEEEEccCCC-cccceEEEcccccceeEEE------EecCCCcEEEEEEeCCCcEEE
Q 001362          400 NRVVWSPD---GSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLA------FSAPCKQISVITCGDDKTIKV  469 (1092)
Q Consensus       400 ~~l~~spd---g~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~------~s~d~~~l~l~s~~~d~~i~v  469 (1092)
                      .+++|+|+   |++|++|+.|+.|++||+.+++ .+.   .+.+|...|.+++      |+|+++  +|++++.|+.|++
T Consensus        69 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~v  143 (357)
T 3i2n_A           69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKV  143 (357)
T ss_dssp             EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEE
T ss_pred             EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEE
Confidence            99999998   7999999999999999999886 443   6789999999995      568898  8999999999999


Q ss_pred             EECCCCc-eeEEEecCCc----CeEEEeec--ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc---
Q 001362          470 WDAVTGS-RTYSFEGHGA----PVYSLCPH--AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA---  539 (1092)
Q Consensus       470 wd~~~~~-~~~~~~~~~~----~v~~~~~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~---  539 (1092)
                      ||+.+++ .+..+..|.+    .+.+++|.  .++++.++++++.||.|++||+++...... ..+...+.+++|+|   
T Consensus       144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~  222 (357)
T 3i2n_A          144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDI  222 (357)
T ss_dssp             ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSS
T ss_pred             EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCC
Confidence            9999987 7788876665    78888742  245778999999999999999998776443 55677999999999   


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe-----eccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---
Q 001362          540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV---  610 (1092)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~-~l~~~s~dg~i~iwd~~~~---  610 (1092)
                      ++.++++++.    ++.|++||..+++....+.     +|.   ..|.+++|+|+++ ++++++.||.|++||+..+   
T Consensus       223 ~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  295 (357)
T 3i2n_A          223 SMNKLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR  295 (357)
T ss_dssp             SCCEEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred             CCCEEEEECC----CCeEEEEeCcCCCcccceeeeccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence            9999999876    6679999998877665554     555   8999999999998 7999999999999998754   


Q ss_pred             ----------------ceEEEEeCCCCCCCCceEEEccCCCEEE-EEeCCCeEEEEECCCCc
Q 001362          611 ----------------QLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESN  655 (1092)
Q Consensus       611 ----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~  655 (1092)
                                      +.+..+..+  ...|.+++|+|++++|+ +++.||.|++|++.+..
T Consensus       296 ~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          296 SKKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             --CCTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             ccccCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence                            345555544  45699999999999998 79999999999998653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-35  Score=339.86  Aligned_cols=350  Identities=10%  Similarity=0.043  Sum_probs=242.2

Q ss_pred             CCCcEEEEEECCCC---------CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC
Q 001362          395 PGVSVNRVVWSPDG---------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  465 (1092)
Q Consensus       395 h~~~V~~l~~spdg---------~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~  465 (1092)
                      +.+.|.+++|+|++         ++||+|+.++.        +                  ...+|+++  ++++++.|+
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~------------------~~~~~~~~--~laS~s~D~  183 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D------------------EPLNEHLE--MFDKEKHSS  183 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C------------------Cccchhhh--hhccCCCCc
Confidence            56899999999987         89999986642        0                  01378998  799999999


Q ss_pred             cEEEEECCCCcee----EEEecCCcCeEEEeeccc----CCccEEEEEecCCeEEEEEcCCCCc-----------eEEec
Q 001362          466 TIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA-----------RVDYD  526 (1092)
Q Consensus       466 ~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~  526 (1092)
                      +|+|||+.+++..    ..+.+|.+.|.+++|+|.    +++.+|++++.||+|++||+.....           ...+.
T Consensus       184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~  263 (524)
T 2j04_B          184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS  263 (524)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred             eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence            9999999887653    456778899999999886    3467999999999999999976542           23567


Q ss_pred             CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-EEEEEeeccccCCceEEE--EEcCCC-CEEEEEeCCCcE
Q 001362          527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVV--HFDTAK-DQILAAGDDHVI  602 (1092)
Q Consensus       527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~--~~~p~~-~~l~~~s~dg~i  602 (1092)
                      .|...|.+++|++++ .|++++.    ++.|++||+.++. ....+.+|.   ..|.++  +|+|++ .+|++++.|++|
T Consensus       264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~---~~V~sv~~~~s~~g~~~laS~S~D~tv  335 (524)
T 2j04_B          264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHD---SYILSVSTAYSDFEDTVVSTVAVDGYF  335 (524)
T ss_dssp             CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSS---SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred             cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeeccc---ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence            788899999999865 7888876    6789999999774 445677777   899999  578887 899999999999


Q ss_pred             EEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccccc
Q 001362          603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG  682 (1092)
Q Consensus       603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  682 (1092)
                      ++||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++..+..+.+                    
T Consensus       336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g--------------------  395 (524)
T 2j04_B          336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS--------------------  395 (524)
T ss_dssp             EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--------------------
T ss_pred             EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--------------------
Confidence            999999887766655443223478999999999999999999999999987655444433                    


Q ss_pred             ccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEe
Q 001362          683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR  762 (1092)
Q Consensus       683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~  762 (1092)
                                                                        |.+.|.+++|+|+|+.|++++.||.+++|+
T Consensus       396 --------------------------------------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          396 --------------------------------------------------RETTITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             --------------------------------------------------CSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             --------------------------------------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence                                                              555666777777777777777777777776


Q ss_pred             ecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcC-CceeeEEecC
Q 001362          763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP  841 (1092)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~-~~~~~~~~~~  841 (1092)
                      .....               +....+.       ....+...+.+++|+|+++.+..  .+.+.+|+.. ++..+..+.+
T Consensus       426 ~~~~~---------------~~~~~~~-------~~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~g  481 (524)
T 2j04_B          426 AARRL---------------LHGIKNS-------SATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDA  481 (524)
T ss_dssp             SCSST---------------TTCC-------------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------
T ss_pred             chHhh---------------ccccccC-------ccceeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecC
Confidence            43210               0000000       00002234678899999985532  2233344443 5677888999


Q ss_pred             CCCCeEEEEEcCCCC---CEEEEEeCCCcEEEEEcCC
Q 001362          842 PSPTATSLAFNPHDN---NVIAIGMDDSTILIYNARS  875 (1092)
Q Consensus       842 ~~~~i~~l~~s~~d~---~~lasg~~dg~v~iwd~~~  875 (1092)
                      |...|.+++|+| ++   .++|+|+.||.|+||++..
T Consensus       482 h~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          482 HGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred             CCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence            999999999999 64   5999999999999999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1e-32  Score=321.99  Aligned_cols=347  Identities=15%  Similarity=0.198  Sum_probs=268.4

Q ss_pred             eEEEEEeeccccCCc-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001362          566 AIKRTYQGLQLQHNS-VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~-v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      .....+.+|.   .. +.++.+  +++++++|+.||+|++||+.+++.+..+..|  ...|.+++|+|++ ++++++.||
T Consensus       112 ~~~~~l~~h~---~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--~~~V~~l~~~~~~-~l~s~s~dg  183 (464)
T 3v7d_B          112 PQRTTLRGHM---TSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGH--DGGVWALKYAHGG-ILVSGSTDR  183 (464)
T ss_dssp             CEEEEEECCS---SSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECSTT-EEEEEETTS
T ss_pred             cceEEEcCCC---CCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCC--CcCEEEEEEcCCC-EEEEEeCCC
Confidence            3456777877   55 465555  5679999999999999999999999998865  4569999999988 999999999


Q ss_pred             eEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccc
Q 001362          645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  724 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~  724 (1092)
                      +|++||+.+++.+..+.+|...|.++++.+                    .++++.+++++.|+.+++|++.........
T Consensus       184 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--------------------~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~  243 (464)
T 3v7d_B          184 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVE--------------------YKNIKYIVTGSRDNTLHVWKLPKESSVPDH  243 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEEE--------------------SSSCEEEEEEETTSCEEEEECCCCCCC---
T ss_pred             CEEEEECCCCcEEEEECCCCCccEEEEEec--------------------CCCCCEEEEEcCCCcEEEeeCCCCcccccc
Confidence            999999999988888888888887777763                    245667777777777777776532211100


Q ss_pred             ccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCC
Q 001362          725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA  804 (1092)
Q Consensus       725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~  804 (1092)
                      ..       ......+.+.+++.                                         . .....+.  +|...
T Consensus       244 ~~-------~~~~~~~~~~~~~~-----------------------------------------~-~~~~~~~--~~~~~  272 (464)
T 3v7d_B          244 GE-------EHDYPLVFHTPEEN-----------------------------------------P-YFVGVLR--GHMAS  272 (464)
T ss_dssp             ----------CCSSEEESCGGGC-----------------------------------------T-TEEEEEC--CCSSC
T ss_pred             cc-------cCCcceEeeccCCC-----------------------------------------e-EEEEEcc--Cccce
Confidence            00       00000001111100                                         0 0011111  36677


Q ss_pred             eeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec
Q 001362          805 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE  883 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~  883 (1092)
                      +.++  +++++++++++ |+.|++||+.+++.+..+.+|...|.+++|+| +++++++|+.||.|++||+.+++++..+.
T Consensus       273 v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  349 (464)
T 3v7d_B          273 VRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQ  349 (464)
T ss_dssp             EEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence            7665  68899999998 79999999999999999999999999999999 89999999999999999999999999999


Q ss_pred             cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEE
Q 001362          884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE  963 (1092)
Q Consensus       884 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd  963 (1092)
                      +|...|.+++|+  +++|++++.||.|++||+.++....    .....     ..+..++|++++++++++.|+.|++||
T Consensus       350 ~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~l~~~~dg~i~iwd  418 (464)
T 3v7d_B          350 GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF----SYHHT-----NLSAITTFYVSDNILVSGSENQFNIYN  418 (464)
T ss_dssp             CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE----EEECT-----TCCCEEEEEECSSEEEEEETTEEEEEE
T ss_pred             CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee----eecCC-----CCccEEEEEeCCCEEEEecCCeEEEEE
Confidence            999999999997  5799999999999999999865322    11111     247789999999999998899999999


Q ss_pred             cCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001362          964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus       964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd 1006 (1092)
                      +.+++.+.....+|...|.+++|+ ++.++++++.||.+.+|-
T Consensus       419 ~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          419 LRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             TTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             CCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            999999988778899999999997 445555666777665554

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=9.8e-33  Score=307.72  Aligned_cols=299  Identities=21%  Similarity=0.304  Sum_probs=250.6

Q ss_pred             ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCcc--cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEE
Q 001362          392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1092)
Q Consensus       392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  468 (1092)
                      |.||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++..  .....+.+|...|.+++|+|+++  +|++++.|+.|+
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i~  111 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTLR  111 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccce
Confidence            8899999999999997 689999999999999999876543  23446789999999999999999  899999999999


Q ss_pred             EEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCC--EEE
Q 001362          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGR--RLF  545 (1092)
Q Consensus       469 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~--~l~  545 (1092)
                      +|+...+........+...+..+.+.+  ++.+|++++.|+.+++||........ ....+...+..++|++++.  .++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  189 (340)
T 4aow_A          112 LWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV  189 (340)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred             EEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence            999999999988888888888888754  56799999999999999987655433 4566778899999998764  566


Q ss_pred             EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCC
Q 001362          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1092)
                      +++.    ++.|++||..+++.+..+.+|.   ..|.+++|+|++++|++|+.||.|++||+.+++.+..+..+   ..+
T Consensus       190 s~~~----d~~i~i~d~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v  259 (340)
T 4aow_A          190 SCGW----DKLVKVWNLANCKLKTNHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG---DII  259 (340)
T ss_dssp             EEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS---SCE
T ss_pred             EEcC----CCEEEEEECCCCceeeEecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC---ceE
Confidence            6665    5679999999999999999888   89999999999999999999999999999999999888765   358


Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec
Q 001362          626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  705 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  705 (1092)
                      .+++|+|++.++ +++.|+.|++||+.++..+..+.....                                        
T Consensus       260 ~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~----------------------------------------  298 (340)
T 4aow_A          260 NALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVI----------------------------------------  298 (340)
T ss_dssp             EEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC------------------------------------------
T ss_pred             EeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccce----------------------------------------
Confidence            999999987655 556789999999987765554432110                                        


Q ss_pred             cccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCC
Q 001362          706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN  766 (1092)
Q Consensus       706 ~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~  766 (1092)
                                           ......|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus       299 ---------------------~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          299 ---------------------STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             --------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             ---------------------eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence                                 0011237788999999999999999999999999998754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-33  Score=327.78  Aligned_cols=275  Identities=12%  Similarity=0.179  Sum_probs=212.7

Q ss_pred             CCcceeeec-ccCCCCceEEeecC-CCceEEEEEcCCCcEEEEecCC---CCeeEEeeeeeeecccccceeeEeeecCCC
Q 001362          322 FPKTVAQTL-IEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS---GQKLFIRNFKVWDIGACSMLFKTALVRDPG  396 (1092)
Q Consensus       322 ~p~~~~~~l-~~h~~~V~~v~~sp-dg~~llasg~~d~~v~iwd~~~---~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~  396 (1092)
                      .....+..+ .+|.+.|++++|+| +|+ +||+|+.||+|+|||+.+   +.....                 ....+|.
T Consensus        50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-----------------~~~~~h~  111 (437)
T 3gre_A           50 LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS-----------------SLTYDCS  111 (437)
T ss_dssp             CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC-----------------SEEEECS
T ss_pred             ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce-----------------eeeccCC
Confidence            345677778 89999999999999 998 799999999999999977   432210                 0011499


Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEcc---CCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC
Q 001362          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYH---GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  473 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~---~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  473 (1092)
                      ..|.+++|+|++++|++|+.|+.|++||+.   +++...   .+.+|  .+..+.|+|++                    
T Consensus       112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~--------------------  166 (437)
T 3gre_A          112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG--------------------  166 (437)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS--------------------
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc--------------------
Confidence            999999999999999999999999999995   554333   34444  67777777643                    


Q ss_pred             CCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCceEEEEEccCCCEEEEEecCC
Q 001362          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                                +...+.++.+...+++.+|++++.||.|++||+++.+....+..  |...|.+++|+|++++|++++.  
T Consensus       167 ----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--  234 (437)
T 3gre_A          167 ----------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT--  234 (437)
T ss_dssp             ----------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET--
T ss_pred             ----------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC--
Confidence                      22334444444466788999999999999999999998888887  7789999999999999999986  


Q ss_pred             CCceeEEEEeCCCCeEEEEEe-eccccCCceEEEEEcC----CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC-----
Q 001362          552 EGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDT----AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----  621 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~p----~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----  621 (1092)
                        ++.|++||+++++.+..+. .+.   ..|.+++|+|    ++.++++++.||.|++||+.+++.+..+..+..     
T Consensus       235 --dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  309 (437)
T 3gre_A          235 --RGIIDIWDIRFNVLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSME  309 (437)
T ss_dssp             --TSCEEEEETTTTEEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGG
T ss_pred             --CCeEEEEEcCCccEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccc
Confidence              5669999999999988886 544   6899996654    577999999999999999999999988875532     


Q ss_pred             -------------------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCcee
Q 001362          622 -------------------LPENPRICFNKNGTLLAVIANENRIKILETPESNSV  657 (1092)
Q Consensus       622 -------------------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  657 (1092)
                                         ...|.+++|+ ++++|++++.|+.|++||+.+++..
T Consensus       310 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~  363 (437)
T 3gre_A          310 HFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS  363 (437)
T ss_dssp             GGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred             eecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence                               2235555666 4556666666666666666554333

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.3e-34  Score=321.01  Aligned_cols=295  Identities=16%  Similarity=0.218  Sum_probs=247.5

Q ss_pred             eecccCCCCceEEeecCC---CceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          328 QTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spd---g~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ..+.+|.+.|++++|+|+   +..++++++.++.|+|||+.+++.+....              ......|...|.+++|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~   77 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAW   77 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEe
Confidence            455699999999999984   44355666666799999999887665311              1113347889999999


Q ss_pred             CCC----CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001362          405 SPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       405 spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      +|+    |++|++|+.||.|++||+.+++.+.   .+.+|...|.+++|+| ++.  +|++++.|+.|++||+.+++.+.
T Consensus        78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~  152 (366)
T 3k26_A           78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVA  152 (366)
T ss_dssp             EECTTTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEE
Confidence            999    6799999999999999999987655   6779999999999999 787  89999999999999999999999


Q ss_pred             EE---ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe----------------------------cCC
Q 001362          480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----------------------------DAP  528 (1092)
Q Consensus       480 ~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----------------------------~~~  528 (1092)
                      .+   .+|...|.+++|++  ++.+|++++.||.|++||+++.+....+                            ..+
T Consensus       153 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (366)
T 3k26_A          153 IFGGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH  230 (366)
T ss_dssp             EECSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred             EecccccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence            88   68999999999965  6789999999999999999876543322                            237


Q ss_pred             CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE--------------EEEEeeccccCCceEEEEEcCC--CCE
Q 001362          529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--------------KRTYQGLQLQHNSVSVVHFDTA--KDQ  592 (1092)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~~~v~~~~~~p~--~~~  592 (1092)
                      ...|.+++|+  ++++++++.    ++.|++||+.++..              +..+.+|.   ..|.+++|+|+  +++
T Consensus       231 ~~~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~  301 (366)
T 3k26_A          231 RNYVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ---CDIWYMRFSMDFWQKM  301 (366)
T ss_dssp             SSCCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS---CCSSCCCCEECTTSSE
T ss_pred             cceEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccC---CcEEEEEEcCCCCCcE
Confidence            7889999998  778888875    66799999987743              66777766   78999999999  999


Q ss_pred             EEEEeCCCcEEEEECCCCc----eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001362          593 ILAAGDDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       593 l~~~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      +++++.||.|++||+.+++    ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus       302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            9999999999999999875    44466666545679999999999999999999999999975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.4e-33  Score=312.80  Aligned_cols=203  Identities=12%  Similarity=0.119  Sum_probs=172.0

Q ss_pred             CCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce
Q 001362          801 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  877 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  877 (1092)
                      +...+.+++|||||+++++++   |++|+|||+.+++++..+. |...|.+++|+| |+++|++++.+ .+++|+..+++
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~  208 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS  208 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence            556688999999999988765   6899999999999998886 778899999999 99999999855 56777777776


Q ss_pred             eeE--eeccccCCeEEEEEcCCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEE
Q 001362          878 VIS--KLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF  951 (1092)
Q Consensus       878 ~~~--~l~~h~~~V~~l~~spdg~~l~s~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l  951 (1092)
                      .+.  ...+|...|.+++|+||++++++++.|+    .+++|++........ ......++..   .|.+++|||||++|
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~---~V~~~~~Spdg~~l  284 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL-RSKQVTNRFK---GITSMDVDMKGELA  284 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE-EEEEEESSCS---CEEEEEECTTSCEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce-eeeeecCCCC---CeEeEEECCCCCce
Confidence            543  4456999999999999999999999887    688899887553322 1223334443   69999999999999


Q ss_pred             EE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001362          952 LL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       952 a~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
                      |+ +.|++|+|||+.+++++..+..+|...|++++|||||++|||||.|++|+||+++..
T Consensus       285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99 578999999999999999888899999999999999999999999999999999754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.1e-34  Score=330.89  Aligned_cols=303  Identities=17%  Similarity=0.195  Sum_probs=238.5

Q ss_pred             eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001362          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      ......+|...|+|++|+|....+||+|+.||+|+|||+.+++......                 +.+|.+.|++++|+
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-----------------~~gH~~~V~~l~f~  173 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-----------------GIGAGGSITGLKFN  173 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-----------------CCSSSCCCCEEEEC
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-----------------ccCCCCCEEEEEEe
Confidence            3456678999999999999654489999999999999999876543211                 56899999999999


Q ss_pred             C-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001362          406 P-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       406 p-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      | ++++|++|+.|++|++||++++. +........+...+.+++|+|+++  +|++|+.||.|++||++ ++.+..+.+|
T Consensus       174 p~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h  249 (435)
T 4e54_B          174 PLNTNQFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMH  249 (435)
T ss_dssp             SSCTTEEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCC
T ss_pred             CCCCCEEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecc
Confidence            8 78999999999999999998753 222112223445688999999999  89999999999999975 5667888999


Q ss_pred             CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001362          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1092)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1092)
                      ...|.+++|+|.. ..++++++.|+.|++||++......   ....|...|.+++|+|+|++|++++.    ++.|++||
T Consensus       250 ~~~v~~v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd  324 (435)
T 4e54_B          250 KKKVTHVALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYS  324 (435)
T ss_dssp             SSCEEEEEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEE
T ss_pred             cceEEeeeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEE
Confidence            9999999997653 3588999999999999998766543   33567789999999999999999986    56699999


Q ss_pred             CCCCeEEEEEeeccccC---CceEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001362          562 ESEGAIKRTYQGLQLQH---NSVSVVHFDTAKDQILAAG------------DDHVIKIWDMNKVQLLTTIDAGGGLPENP  626 (1092)
Q Consensus       562 ~~~~~~~~~~~~~~~~~---~~v~~~~~~p~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  626 (1092)
                      ..++.....+..|....   ..+..+.|+|++..+++++            .++.|++||..+++.+..+..+. ...|.
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~  403 (435)
T 4e54_B          325 ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGIS  403 (435)
T ss_dssp             SSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCC
T ss_pred             CCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEE
Confidence            99998887776654111   1233456777777776654            34679999999999988875433 34577


Q ss_pred             eE-EEccCCCEEEEEeCCCeEEEEECCCCce
Q 001362          627 RI-CFNKNGTLLAVIANENRIKILETPESNS  656 (1092)
Q Consensus       627 ~v-~~s~~~~~l~~~~~dg~i~iw~~~~~~~  656 (1092)
                      ++ +|+|+|++|++|+ |+.|+||++.+++.
T Consensus       404 s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          404 SLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             EEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            76 6999999999876 78999999988754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.3e-33  Score=314.25  Aligned_cols=291  Identities=12%  Similarity=0.073  Sum_probs=246.4

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCC--eeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001362          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +..|.+.|++++|+|+|+ +|++|+.|+.|+|||+.+++  .+..                   +.+|...|.+++|+|+
T Consensus         4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~   63 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPD   63 (372)
T ss_dssp             EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETT
T ss_pred             ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCC
Confidence            455889999999999998 68999999999999999886  3332                   6689999999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce---eEEE-ec
Q 001362          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSF-EG  483 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~-~~  483 (1092)
                      +++|++++.|+.|++||+.+++... ...+..|...|.+++|+|+++  ++++++.|+.|++||+.++..   ...+ .+
T Consensus        64 ~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  140 (372)
T 1k8k_C           64 SNRIVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKP  140 (372)
T ss_dssp             TTEEEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred             CCEEEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecc
Confidence            9999999999999999998876333 224567999999999999999  899999999999999998873   3333 67


Q ss_pred             CCcCeEEEeecccCCccEEEEEecCCeEEEEEcC------------------CCCceEEecCCCCceEEEEEccCCCEEE
Q 001362          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------------SLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~------------------~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      |...|.+++|++  ++.+|++++.||.|++||+.                  .......+..+...+.+++|+|++++++
T Consensus       141 ~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  218 (372)
T 1k8k_C          141 IRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  218 (372)
T ss_dssp             CCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             cCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence            899999999965  66899999999999999954                  4566677778888999999999999999


Q ss_pred             EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceE----------
Q 001362          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLL----------  613 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~--~~~~----------  613 (1092)
                      +++.    ++.|++||..+++.+..+..|.   ..+.+++|+|++.+++++ .|+.|++|++.+  +...          
T Consensus       219 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~  290 (372)
T 1k8k_C          219 WVSH----DSTVCLADADKKMAVATLASET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ  290 (372)
T ss_dssp             EEET----TTEEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred             EEeC----CCEEEEEECCCCceeEEEccCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence            9986    6679999999999999999877   899999999999877777 999999999987  4311          


Q ss_pred             ----------------------------EEEeCCCCCCCCceEEEc-cCC---CEEEEEeCCCeEEEEECCCC
Q 001362          614 ----------------------------TTIDAGGGLPENPRICFN-KNG---TLLAVIANENRIKILETPES  654 (1092)
Q Consensus       614 ----------------------------~~~~~~~~~~~v~~v~~s-~~~---~~l~~~~~dg~i~iw~~~~~  654 (1092)
                                                  ..+. .++...|.+++|. ++|   ++|++++.||.|++|++.++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             ------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             chhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence                                        1111 2445679999866 566   99999999999999998754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.5e-33  Score=321.35  Aligned_cols=347  Identities=11%  Similarity=0.122  Sum_probs=242.3

Q ss_pred             eEEEEeCCCCeEEEEEeeccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeC-----------CCCCC
Q 001362          556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLP  623 (1092)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~  623 (1092)
                      .+++|+...++....+.+|.   ..|.+++|+| +++++++++.||.|++||+.++.....+..           ..+..
T Consensus        24 ~~~v~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (408)
T 4a11_B           24 TRRVLGLELNKDRDVERIHG---GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY  100 (408)
T ss_dssp             HHHHHTEEECTTEEECCCCS---SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred             cceeeccccCcceeeeeccC---CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence            46778888788788888877   9999999999 999999999999999999998765443321           12445


Q ss_pred             CCceEEEcc-CCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccce
Q 001362          624 ENPRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI  702 (1092)
Q Consensus       624 ~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~  702 (1092)
                      .|.+++|+| ++.++++++.||.|++|++.+++....+.                                         
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------------------------  139 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-----------------------------------------  139 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-----------------------------------------
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-----------------------------------------
Confidence            789999999 77899999999999999987653322111                                         


Q ss_pred             eeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCcc
Q 001362          703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL  782 (1092)
Q Consensus       703 s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~  782 (1092)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (408)
T 4a11_B          140 --------------------------------------------------------------------------------  139 (408)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCceeeecCCCCCCCCCeeEEEEec---CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC-
Q 001362          783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-  857 (1092)
Q Consensus       783 w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~---dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-  857 (1092)
                                        +...+.++++++   ++.++++++ ++.|++||+.+++.+..+..|...|++++|+| ++. 
T Consensus       140 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  200 (408)
T 4a11_B          140 ------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDY  200 (408)
T ss_dssp             ------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTT
T ss_pred             ------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCc
Confidence                              222334444544   445777776 68999999999999999999999999999999 666 


Q ss_pred             EEEEEeCCCcEEEEEcCCce-eeEee---------------ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 001362          858 VIAIGMDDSTILIYNARSSE-VISKL---------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ  921 (1092)
Q Consensus       858 ~lasg~~dg~v~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~  921 (1092)
                      ++++|+.||.|++||+.++. .+..+               .+|...|.+++|+|++++|++++.||.|++||+.+++..
T Consensus       201 ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  280 (408)
T 4a11_B          201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT  280 (408)
T ss_dssp             EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC
T ss_pred             EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc
Confidence            69999999999999998765 34443               579999999999999999999999999999999986633


Q ss_pred             eeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCc
Q 001362          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT 1001 (1092)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~ 1001 (1092)
                      .............  ...........+.+++++.++.|++||+.+++.+.. +.+|...|++++|+|||++|++++.||.
T Consensus       281 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~  357 (408)
T 4a11_B          281 LVNYGKVCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCCVFQSNFQELYSGSRDCN  357 (408)
T ss_dssp             CCCCCCCCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE-ECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             eeccccccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceee-eccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence            2111111111111  123334445556666668999999999999999887 5689999999999999999999999999


Q ss_pred             EEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001362         1002 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1002 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      |++||+.+++.+.......             ....+.|.....+.+.+.++.+++|+.+
T Consensus       358 i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          358 ILAWVPSLYEPVPDDDETT-------------TKSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             EEEEEECC----------------------------------------------------
T ss_pred             EEEEeCCCCCccCCCCceE-------------eccccccccceeecccCccCceeecCCc
Confidence            9999999998775443111             1122333345677788899999999874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.7e-33  Score=314.61  Aligned_cols=307  Identities=16%  Similarity=0.168  Sum_probs=244.5

Q ss_pred             EEeCCCCeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCE
Q 001362          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTL  636 (1092)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~  636 (1092)
                      +|+.........+.+|.   ..|.+++|+|++ +++++|+.||.|++||+.+++....+...++...|.+++|+| ++++
T Consensus        57 ~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  133 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPFD---RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ  133 (383)
T ss_dssp             HHHHTTCEEEEEECCCS---SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred             cccccccceEEeccCCC---CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence            44556677777888877   899999999999 999999999999999999999888887655667899999999 7899


Q ss_pred             EEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001362          637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~  716 (1092)
                      |++++.|+.|++||+.+. ....+..                                                      
T Consensus       134 l~s~~~d~~i~iwd~~~~-~~~~~~~------------------------------------------------------  158 (383)
T 3ei3_B          134 LFVSSIRGATTLRDFSGS-VIQVFAK------------------------------------------------------  158 (383)
T ss_dssp             EEEEETTTEEEEEETTSC-EEEEEEC------------------------------------------------------
T ss_pred             EEEEeCCCEEEEEECCCC-ceEEEec------------------------------------------------------
Confidence            999999999999998732 1100000                                                      


Q ss_pred             cccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecC
Q 001362          717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT  796 (1092)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l  796 (1092)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (383)
T 3ei3_B          159 --------------------------------------------------------------------------------  158 (383)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC-EEEEEeCCCcEEEEEcC
Q 001362          797 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNAR  874 (1092)
Q Consensus       797 ~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~dg~v~iwd~~  874 (1092)
                       ...+...|.+++|+|+++++++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.|+.|++||+.
T Consensus       159 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~  235 (383)
T 3ei3_B          159 -TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLR  235 (383)
T ss_dssp             -CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGG
T ss_pred             -cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCC
Confidence             001456788899999999999888 689999998 5778888999999999999999 777 99999999999999999


Q ss_pred             C----ceeeEeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeec--CCCCcC-------CCCCce
Q 001362          875 S----SEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMT-------LAPSET  940 (1092)
Q Consensus       875 ~----~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~--~~~~~~-------~~~~v~  940 (1092)
                      +    +.++..+ +|...|++++|+| ++++|++++.|+.|++||+.+++.........  ...+..       ....+.
T Consensus       236 ~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  314 (383)
T 3ei3_B          236 NIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLI  314 (383)
T ss_dssp             GCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred             CCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCce
Confidence            8    5666666 6999999999999 99999999999999999998866433211111  001111       012344


Q ss_pred             EEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccC-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001362          941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus       941 ~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
                      .++|+|||++ ..+.|+.|++||+.+++++..+... |...+..++|+|||++|++++ ||.|++||+++
T Consensus       315 ~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          315 VAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            4666666666 3357899999999999998875532 577888889999999999997 99999999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.7e-33  Score=324.58  Aligned_cols=302  Identities=12%  Similarity=0.120  Sum_probs=231.9

Q ss_pred             EEEeeccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEEEeCCCeE
Q 001362          569 RTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRI  646 (1092)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~p~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i  646 (1092)
                      ....+|.   ..|++++|+|. ++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++++|++++.||+|
T Consensus       113 ~~~~~~~---~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v  189 (435)
T 4e54_B          113 QKAAPFD---RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT  189 (435)
T ss_dssp             CEEEECS---SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred             ccCCCCC---CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence            3445555   78999999994 5789999999999999999887766666656667899999998 78999999999999


Q ss_pred             EEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccc
Q 001362          647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL  726 (1092)
Q Consensus       647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~  726 (1092)
                      ++||+.++.... +                                                                  
T Consensus       190 ~iwd~~~~~~~~-~------------------------------------------------------------------  202 (435)
T 4e54_B          190 RLQDFKGNILRV-F------------------------------------------------------------------  202 (435)
T ss_dssp             EEEETTSCEEEE-E------------------------------------------------------------------
T ss_pred             EEeeccCCceeE-E------------------------------------------------------------------
Confidence            999976431100 0                                                                  


Q ss_pred             ccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001362          727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  806 (1092)
Q Consensus       727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~  806 (1092)
                                     ...          +                                            .+...+.
T Consensus       203 ---------------~~~----------~--------------------------------------------~~~~~~~  213 (435)
T 4e54_B          203 ---------------ASS----------D--------------------------------------------TINIWFC  213 (435)
T ss_dssp             ---------------ECC----------S--------------------------------------------SCSCCCC
T ss_pred             ---------------ecc----------C--------------------------------------------CCCccEE
Confidence                           000          0                                            1334567


Q ss_pred             EEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe---e
Q 001362          807 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK---L  882 (1092)
Q Consensus       807 ~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~---l  882 (1092)
                      +++|+|++++|++++ ||.|++||+. ++.+..+.+|...|++++|+|++..++++|+.|+.|+|||+.+++....   .
T Consensus       214 ~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~  292 (435)
T 4e54_B          214 SLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS  292 (435)
T ss_dssp             CEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBC
T ss_pred             EEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEe
Confidence            889999999999998 7999999986 5667788899999999999995556899999999999999988765433   3


Q ss_pred             ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--------
Q 001362          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--------  954 (1092)
Q Consensus       883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--------  954 (1092)
                      .+|...|++++|+|||++|++++.||.|+|||+.+++..............  ...+..+.|+|++..++++        
T Consensus       293 ~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~  370 (435)
T 4e54_B          293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ--HLTPIKAAWHPRYNLIVVGRYPDPNFK  370 (435)
T ss_dssp             CBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS--SSCCCBCEECSSSSCEEEECCCCTTSC
T ss_pred             eeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccc--cceeEEEEEcCCCCEEEEEEcCCCCeE
Confidence            579999999999999999999999999999999987644322111111000  0123345566666665553        


Q ss_pred             -----eCCcEEEEEcCCceeeeeeccCCCCCEEEE-EEecCCCEEEEEECCCcEEEEEcCCCceE
Q 001362          955 -----HETHLAIYEAEELTCLKQWFPISSVPISQA-TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1092)
Q Consensus       955 -----~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l-~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~ 1013 (1092)
                           .++.|++||..+++.+..+..+|...|.++ +|+|||++|++|+ |++|+||++++|+..
T Consensus       371 ~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          371 SCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             EEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence                 235799999999999998888899999987 6999999999875 889999999998754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-32  Score=306.85  Aligned_cols=289  Identities=12%  Similarity=0.146  Sum_probs=259.7

Q ss_pred             eeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001362          390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1092)
Q Consensus       390 ~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  469 (1092)
                      ..+.+|...|++++|+|+|++|++++.|+.|++||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|+.|++
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i  100 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKL  100 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEE
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEE
Confidence            3488999999999999999999999999999999999987555   7889999999999999999  8999999999999


Q ss_pred             EECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC-----CeEEEEEcCCCCc-----------eEEecCCCC--c
Q 001362          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGA-----------RVDYDAPGL--G  531 (1092)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~-----------~~~~~~~~~--~  531 (1092)
                      ||+.+++.+..+. +...|.+++|++  ++.++++++.+     |.|++||+.....           ...+..+..  .
T Consensus       101 wd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (369)
T 3zwl_B          101 WDVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA  177 (369)
T ss_dssp             EETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred             EECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence            9999999999988 889999999965  67899999999     9999999987643           223344444  8


Q ss_pred             eEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001362          532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  610 (1092)
Q Consensus       532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~  610 (1092)
                      +.+++|+|+++++++++.    ++.|++||+.+ ++.+..+..|.   ..|.+++|+|+++++++++.|+.|++||+.++
T Consensus       178 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          178 ATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHE---KSISDMQFSPDLTYFITSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             EEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             eeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCC---CceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence            999999999999999876    66799999998 78888888877   89999999999999999999999999999999


Q ss_pred             ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC--------------eEEEEECCCCceeeecccccCceeeeeecCCC
Q 001362          611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--------------RIKILETPESNSVDAAGVLSDNLRKLSVNPIS  676 (1092)
Q Consensus       611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~  676 (1092)
                      +.+..+...   ..+..++|+|+++++++++.++              .+++|+..+++.+..+.+|...|.+++++   
T Consensus       251 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s---  324 (369)
T 3zwl_B          251 QVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS---  324 (369)
T ss_dssp             CEEEEEECS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC---
T ss_pred             ceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC---
Confidence            999888743   4589999999999999999988              89999999999999999999999999996   


Q ss_pred             ccccccccCCceeecCCCCCCCccceeeccccccceeccccc
Q 001362          677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA  718 (1092)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~  718 (1092)
                                         |+++++++++.|+.+++|++...
T Consensus       325 -------------------~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          325 -------------------PQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             -------------------TTSSEEEEEETTSEEEEEEECHH
T ss_pred             -------------------CCCCEEEEEcCCCeEEEEECccc
Confidence                               78899999999999999998743

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.9e-33  Score=312.34  Aligned_cols=298  Identities=11%  Similarity=0.122  Sum_probs=231.2

Q ss_pred             CceEEeecCCCceEEEEEcCCC-------cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVG-------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~-------~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      +|+|++|+|||+ +||+|+.|.       .|+||++..+.......+         .......+.+|...|.+++++  +
T Consensus        16 PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~---------~~~~~~~l~~~~~~v~s~~~~--~   83 (365)
T 4h5i_A           16 PAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF---------HILSEFALEDNDDSPTAIDAS--K   83 (365)
T ss_dssp             CEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE---------EEEEEEECCTTSCCCCEEEEE--T
T ss_pred             CEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeee---------eeeeEEEccCCCCceEEEEeC--C
Confidence            899999999998 788886543       599999987654321111         111222377899999888765  5


Q ss_pred             CEEEEE-----------eCCCEEEEEEccCCCcccc-eEE-----EcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          409 SLLGVA-----------YSKHIVQLYAYHGGSDARQ-QLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       409 ~~las~-----------~~d~~i~iwd~~~~~~~~~-~~~-----~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+++|           +.|+.+++|++.++..... ...     ...+...+.+++|||||+.+.+++++.|++|+|||
T Consensus        84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd  163 (365)
T 4h5i_A           84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIID  163 (365)
T ss_dssp             TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEE
T ss_pred             CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeE
Confidence            566665           3567899999987643221 111     12344568999999999965566777899999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEEEEccCCCEEEEEec
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      +++++++..+. |...|.+++|+|  ||.++++++.+ .+++|+..++.....  ...+...+.+++|+|+++++++++.
T Consensus       164 ~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~  239 (365)
T 4h5i_A          164 PSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL  239 (365)
T ss_dssp             TTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence            99999999886 778899999954  77899998855 566666666665543  3456778999999999999999988


Q ss_pred             CCCCceeEEEEeCCCCeE----EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-eCCCCCCC
Q 001362          550 SKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLPE  624 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~  624 (1092)
                      ++.....++.|+...+..    ...+.+|.   ..|.+++|+|++++|++|+.|++|+|||+.+++++..+ ..|  ...
T Consensus       240 d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~~  314 (365)
T 4h5i_A          240 KKGKGIVLTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SFA  314 (365)
T ss_dssp             SSSCCEEEEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SSC
T ss_pred             CCcceeEEeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cCC
Confidence            766666889999877654    23455555   88999999999999999999999999999999998876 444  457


Q ss_pred             CceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001362          625 NPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       625 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      |.+++|+|||++||+++.|++|+||+++..
T Consensus       315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          315 ITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999999999999999999999999999754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-32  Score=312.22  Aligned_cols=299  Identities=16%  Similarity=0.231  Sum_probs=247.5

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      ....+|.+.+.+.++++++.. +++++.|+.|+|||+.+++.....                  ...|...|.+++|+|+
T Consensus        85 ~~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~  145 (401)
T 4aez_A           85 LDAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHD  145 (401)
T ss_dssp             EECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTT
T ss_pred             eeCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCC
Confidence            344578777665555444453 566778999999999999876541                  2238899999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC-CCceeEEEecCCc
Q 001362          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGA  486 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~  486 (1092)
                      |++|++|+.||.|++||+.+++.+.   .+.+|...|.+++|+  +.  .+++++.|+.|++||+. .+..+..+.+|..
T Consensus       146 ~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  218 (401)
T 4aez_A          146 GSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSS  218 (401)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred             CCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence            9999999999999999999987555   678999999999994  45  79999999999999999 5677888999999


Q ss_pred             CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001362          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1092)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1092)
                      .|.+++|++  ++.+|++++.||.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||..+++
T Consensus       219 ~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~  295 (401)
T 4aez_A          219 EVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGA  295 (401)
T ss_dssp             CEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCC
T ss_pred             CeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCC
Confidence            999999966  6789999999999999999999888889899999999999998866555432 1237789999999999


Q ss_pred             EEEEEeeccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001362          567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      .+..+.. .   ..+.+++|+|+++.+++++  .||.|++||+.++..........+...|.+++|+|++++|++++.||
T Consensus       296 ~~~~~~~-~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg  371 (401)
T 4aez_A          296 RVNTVDA-G---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE  371 (401)
T ss_dssp             EEEEEEC-S---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred             EEEEEeC-C---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            9888864 3   5899999999999999954  89999999999977766654444456799999999999999999999


Q ss_pred             eEEEEECCCCceeee
Q 001362          645 RIKILETPESNSVDA  659 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~  659 (1092)
                      .|++|++.+++.+..
T Consensus       372 ~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          372 NLKFWRVYDGDHVKR  386 (401)
T ss_dssp             EEEEEECCC------
T ss_pred             cEEEEECCCCccccc
Confidence            999999998866544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.6e-32  Score=298.54  Aligned_cols=251  Identities=13%  Similarity=0.168  Sum_probs=211.3

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCC--CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      .++.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++  +.+..                   +.+|.++|.+++|+
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~-------------------l~gH~~~V~~v~~s   62 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDWA   62 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEE-------------------ECCCSSCEEEEEEC
T ss_pred             eeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEE-------------------EccccCCeEEEEec
Confidence            56789999999999999998 6999999999999999754  33332                   77999999999998


Q ss_pred             CC--CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEEEECCCCc--eeE
Q 001362          406 PD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTY  479 (1092)
Q Consensus       406 pd--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~--~~~  479 (1092)
                      |+  |++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+  +.  +|++++.|++|++||+.++.  ...
T Consensus        63 ~~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~  139 (297)
T 2pm7_B           63 HPKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPI  139 (297)
T ss_dssp             CGGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred             CCCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeee
Confidence            74  899999999999999999987422 22357789999999999998  77  89999999999999998764  246


Q ss_pred             EEecCCcCeEEEeecccC-----------CccEEEEEecCCeEEEEEcCCCC----ceEEecCCCCceEEEEEccCC---
Q 001362          480 SFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG---  541 (1092)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~dg---  541 (1092)
                      .+.+|...|.+++|+|..           ++.+|++|+.|++|++||++...    ....+..|...|.+++|+|++   
T Consensus       140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~  219 (297)
T 2pm7_B          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  219 (297)
T ss_dssp             EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCc
Confidence            778999999999998752           35799999999999999998766    345678899999999999995   


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCe---EEEEE--eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001362          542 RRLFSCGTSKEGESFLVEWNESEGA---IKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  608 (1092)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~--~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~  608 (1092)
                      ++|++++.    ++.|++||..++.   ....+  ..+   ...|.+++|+|++++|++++.|+.|++|+..
T Consensus       220 ~~las~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          220 SYMASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKF---PDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCC---SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             eEEEEEEC----CCcEEEEEeCCCCCccceeeeecccC---CCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            78999886    6679999987643   11222  233   3789999999999999999999999999976

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.5e-34  Score=323.60  Aligned_cols=289  Identities=12%  Similarity=0.063  Sum_probs=226.5

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCC--CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001362          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      ++.|.+.|++++|+|+|+ +||+|+.|+.|+|||+.++  +.+..                   +.+|...|.+++|+|+
T Consensus         7 ~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~   66 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPK   66 (377)
T ss_dssp             EEECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTT
T ss_pred             EecCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCC
Confidence            345667999999999998 6899999999999999987  33332                   6789999999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc---eeEEEec-
Q 001362          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEG-  483 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~---~~~~~~~-  483 (1092)
                      +++|++++.|++|++||+.+++.......+.+|...|.+++|+|+++  +|++++.|+.|++||+++++   ....+.+ 
T Consensus        67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (377)
T 3dwl_C           67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRP  144 (377)
T ss_dssp             TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence            99999999999999999999874444456788999999999999999  79999999999999999887   4778888 


Q ss_pred             CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC------------------CCceEEecCCCCceEEEEEccCCCEEE
Q 001362          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS------------------LGARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      |...|.+++|++  ++.+|++++.||.|++||+..                  ......+ .|...|.+++|+|++++|+
T Consensus       145 h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~  221 (377)
T 3dwl_C          145 LRSTILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA  221 (377)
T ss_dssp             CCSCEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred             cCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence            999999999965  678999999999999999853                  2233344 7788999999999999999


Q ss_pred             EEecCCCCceeEEEEeCCCCeE----EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----------
Q 001362          546 SCGTSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ----------  611 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~----------  611 (1092)
                      +++.    ++.|++||+.+++.    +..+.+|.   ..|.+++|+|+++++++++.++.+ +|+.....          
T Consensus       222 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~  293 (377)
T 3dwl_C          222 YAGH----DSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAG  293 (377)
T ss_dssp             EEET----TTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred             EEeC----CCcEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence            9986    66799999999987    77788877   899999999999999888776665 66554211          


Q ss_pred             -----------------------------eEEEEeC-----------CCCCCCCceEEEccC-CC---EEEEEeCCCeEE
Q 001362          612 -----------------------------LLTTIDA-----------GGGLPENPRICFNKN-GT---LLAVIANENRIK  647 (1092)
Q Consensus       612 -----------------------------~~~~~~~-----------~~~~~~v~~v~~s~~-~~---~l~~~~~dg~i~  647 (1092)
                                                   .......           ..+...|.++++.+. +.   .+++++.||.|+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~  373 (377)
T 3dwl_C          294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV  373 (377)
T ss_dssp             CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred             ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence                                         0000000           014456888886653 33   699999999999


Q ss_pred             EEEC
Q 001362          648 ILET  651 (1092)
Q Consensus       648 iw~~  651 (1092)
                      +||+
T Consensus       374 iWdl  377 (377)
T 3dwl_C          374 LWTL  377 (377)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=8.2e-32  Score=309.13  Aligned_cols=289  Identities=16%  Similarity=0.256  Sum_probs=244.1

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      ..+.|+||+++  +||+|. |++|+|||+.+|+......                 +.+|...|++|+|+|||++||+|+
T Consensus       107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasgs  166 (420)
T 4gga_A          107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT  166 (420)
T ss_dssp             TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred             cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEEE
Confidence            46789999875  678875 8999999999998776422                 557889999999999999999999


Q ss_pred             CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEecCCcCeEEEeec
Q 001362          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~  494 (1092)
                      .|++|+|||+.+++.+.   .+.+|...+.+++++  +.  ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus       167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~  239 (420)
T 4gga_A          167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA  239 (420)
T ss_dssp             TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence            99999999999987655   788999999988875  45  7999999999999998864 5567889999999999985


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccCCCEE-EEEecCCCCceeEEEEeCCCCeEEE
Q 001362          495 AKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKR  569 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l-~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1092)
                      +  ++.++++++.||.+++|+....+.    ......+...|.+++|+|++..+ ++++.  ..++.|++||+.+++...
T Consensus       240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~  315 (420)
T 4gga_A          240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS  315 (420)
T ss_dssp             T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred             C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence            4  678999999999999999987653    44667788899999999977654 44433  347789999999999998


Q ss_pred             EEeeccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001362          570 TYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1092)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~p~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  647 (1092)
                      .+..+.    .+.++.|+|+++.+++++  .|+.|++||+.+++++..+..|.  ..|.+++|+|+|++|++|+.|++|+
T Consensus       316 ~~~~~~----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvr  389 (420)
T 4gga_A          316 AVDAHS----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLR  389 (420)
T ss_dssp             EEECSS----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEE
T ss_pred             eecccc----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEE
Confidence            887654    789999999999998865  78999999999999999998664  5799999999999999999999999


Q ss_pred             EEECCCCceeeecc
Q 001362          648 ILETPESNSVDAAG  661 (1092)
Q Consensus       648 iw~~~~~~~~~~~~  661 (1092)
                      +|++.+..+.....
T Consensus       390 iWdv~~~~~~~~~~  403 (420)
T 4gga_A          390 LWRCFELDPARRRE  403 (420)
T ss_dssp             EECCSCSSCC----
T ss_pred             EEECCCCCccchhh
Confidence            99998765544443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-33  Score=310.95  Aligned_cols=317  Identities=11%  Similarity=0.022  Sum_probs=247.9

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001362          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  410 (1092)
                      +.-+..|.+|+|||||+ ++|+++.|++|+  |...++.                      +.+|...|.+++|+|+|  
T Consensus        12 ~~~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg--   64 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE--   64 (588)
T ss_dssp             CCCSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC--
T ss_pred             hHhhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC--
Confidence            34467999999999998 799999999999  7555432                      45799999999999999  


Q ss_pred             EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc----
Q 001362          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA----  486 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~----  486 (1092)
                           .++.+.+|+.+....+.    + .|...|.+++|||||+  .|++++.||.|++||.++  ++..+. |..    
T Consensus        65 -----~~~~~~~~~~~~~~~~~----~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~  129 (588)
T 2j04_A           65 -----FENKLDFELAQQNGLLN----S-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS  129 (588)
T ss_dssp             -----CCCTTTTSCCCSSCSST----T-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred             -----CcceEEEEeCCCceEee----c-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence                 45555555543322121    2 5688999999999999  799999999999999544  667777 766    


Q ss_pred             -CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-------eEEe----cCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001362          487 -PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-------RVDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       487 -~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~----~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                       .|.+++|+|  ||++|++|+.||+|++||+..+..       ...+    .+|...|.+++|+|||  +++++.    +
T Consensus       130 ~sv~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D  201 (588)
T 2j04_A          130 RTYHCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----N  201 (588)
T ss_dssp             TCEEEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----T
T ss_pred             ccEEEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----C
Confidence             499999955  789999999999999999998753       3444    5667899999999999  666665    6


Q ss_pred             eeEEEEeCCCCeE---EEEEe-eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001362          555 SFLVEWNESEGAI---KRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       555 ~~i~iwd~~~~~~---~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                      +.|++||+.++..   .+++. +|.   ..|.+++|+  ++.+++++ +++|++||+.+++.......  +...+..++|
T Consensus       202 ~tVrlWd~~~~~~~~~~~tL~~~h~---~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~  273 (588)
T 2j04_A          202 NSVFSMTVSASSHQPVSRMIQNASR---RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPL  273 (588)
T ss_dssp             CCEEEECCCSSSSCCCEEEEECCCS---SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEE
T ss_pred             CeEEEEECCCCccccceeeeccccc---CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEe
Confidence            6799999988774   34563 554   789999999  58888887 69999999998877444433  4467999999


Q ss_pred             --ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccc
Q 001362          631 --NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  708 (1092)
Q Consensus       631 --s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  708 (1092)
                        +|++..+++++.+|+ ++|....                +++                      +||+..+++.  |+
T Consensus       274 ~~s~d~~~La~a~edG~-klw~~d~----------------~~~----------------------spd~~l~a~~--d~  312 (588)
T 2j04_A          274 NHEKESTILLMSNKTSY-KVLLEDE----------------LHV----------------------TADNIIAPYL--EK  312 (588)
T ss_dssp             TTCSSCEEEEECSSCEE-EEEESSS----------------EEE----------------------ECCCSSHHHH--HH
T ss_pred             eeCCCCCEEEEEcCCCC-EEEeecc----------------EEE----------------------CCCceEEEEc--CC
Confidence              999999999999999 9999771                223                      4677777775  89


Q ss_pred             ccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeec
Q 001362          709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS  754 (1092)
Q Consensus       709 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~  754 (1092)
                      ++++|+...+..      .  ...+...|.+++|+|||+.+++++.
T Consensus       313 ~v~lW~~~g~~l------~--~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          313 KFKKWSTIWNEF------N--NYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             HHHHTTTTTTSS------S--SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             EEEEEECCCCce------e--eeccceEEEEEEECCCCCEEEEEEe
Confidence            999999753321      1  1123567999999999998887765

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.1e-31  Score=329.29  Aligned_cols=212  Identities=18%  Similarity=0.295  Sum_probs=184.3

Q ss_pred             EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-----ceeEEEecCCcCeEEEeecccCCccEEEEEecCC
Q 001362          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG  509 (1092)
Q Consensus       435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg  509 (1092)
                      ..+.+|.+.|++++|+|++.. +|+||+.|++|++||+.++     .....+.+|...|.+++|++  ++.+|++|+.||
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~Dg  452 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSWDG  452 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEETTS
T ss_pred             hhcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeCCC
Confidence            357899999999999998654 7999999999999998763     45678899999999999955  778999999999


Q ss_pred             eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001362          510 KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA  589 (1092)
Q Consensus       510 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~  589 (1092)
                      +|++||+.++.....+..|...|.+++|+|++++|++++.    ++.|++||...............|...|.+++|+|+
T Consensus       453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  528 (694)
T 3dm0_A          453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN  528 (694)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred             cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence            9999999999888899999999999999999999999986    566999998766554444333334588999999998


Q ss_pred             C--CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001362          590 K--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       590 ~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      +  ..+++++.|++|++||+.+++....+..|.  ..|.+++|+|++++|++++.||.|++||+.+++
T Consensus       529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK  594 (694)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred             CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            6  579999999999999999999988887664  469999999999999999999999999988664

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.4e-32  Score=310.66  Aligned_cols=296  Identities=16%  Similarity=0.151  Sum_probs=250.1

Q ss_pred             eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC------ceEEecCCCCceEEEEEccC----C---CEE
Q 001362          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYDAPGLGCTRMAYSAN----G---RRL  544 (1092)
Q Consensus       478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~i~~~~~s~d----g---~~l  544 (1092)
                      ...+.+|...|++++|++    .+|++++.||.|++||+....      ....+..|...|.+++|+|+    +   ++|
T Consensus         9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            456678999999999965    599999999999999999988      67788889999999999999    9   999


Q ss_pred             EEEecCCCCceeEEEEeCCCCeE-----EEEEeecccc--CCceEEEEEc----CCCCE-EEEEeCCCcEEEEECCC---
Q 001362          545 FSCGTSKEGESFLVEWNESEGAI-----KRTYQGLQLQ--HNSVSVVHFD----TAKDQ-ILAAGDDHVIKIWDMNK---  609 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~-----~~~~~~~~~~--~~~v~~~~~~----p~~~~-l~~~s~dg~i~iwd~~~---  609 (1092)
                      ++++.    ++.|++||+.+++.     ...+..|..+  ...|.+++|+    |++++ +++++.||.|++||+.+   
T Consensus        85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence            99886    55699999998886     7788777322  3789999999    99999 99999999999999988   


Q ss_pred             ---CceEE-----EEeC-----CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCC
Q 001362          610 ---VQLLT-----TIDA-----GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS  676 (1092)
Q Consensus       610 ---~~~~~-----~~~~-----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~  676 (1092)
                         ++.+.     .+..     ..+...+.+++|+|++ ++++++.||.|++||+.+++.+..+..              
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------  225 (397)
T 1sq9_A          161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES--------------  225 (397)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC--------------
T ss_pred             ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec--------------
Confidence               66555     5543     3334568999999999 999999999999999875432221110              


Q ss_pred             ccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCC
Q 001362          677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG  756 (1092)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg  756 (1092)
                                                                                                      
T Consensus       226 --------------------------------------------------------------------------------  225 (397)
T 1sq9_A          226 --------------------------------------------------------------------------------  225 (397)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCC---CCCeeEEEEecCCCEEEEEe-C---CeEEEEE
Q 001362          757 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS---QEAVPCFALSKNDAYLFSAS-G---GVISLYI  829 (1092)
Q Consensus       757 ~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~---~~~v~~~~~s~dg~~l~~~s-d---g~i~iwd  829 (1092)
                                                             .  .+|   ...|.+++|+|++++|++++ +   +.|++||
T Consensus       226 ---------------------------------------~--~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d  264 (397)
T 1sq9_A          226 ---------------------------------------Q--HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE  264 (397)
T ss_dssp             ---------------------------------------C--C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred             ---------------------------------------c--ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEE
Confidence                                                   0  014   66788999999999999887 6   7999999


Q ss_pred             cCCceeeEEecC-------------CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec------cc-----
Q 001362          830 VMTFKTILTIMP-------------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------GH-----  885 (1092)
Q Consensus       830 ~~~~~~~~~~~~-------------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~------~h-----  885 (1092)
                      +.+++.+..+..             |...|.+++|+| ++++|++++.||.|++||+.+++.+..+.      +|     
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  343 (397)
T 1sq9_A          265 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL  343 (397)
T ss_dssp             TTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred             CCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhh
Confidence            999999999988             999999999999 89999999999999999999999999999      88     


Q ss_pred             ----------cCCeEEEEEcCCC----------CEEEEEeCCCcEEEEEcCCC
Q 001362          886 ----------SKRVTGLVFSDAL----------NILVSSGGDAQIFVWDVDGW  918 (1092)
Q Consensus       886 ----------~~~V~~l~~spdg----------~~l~s~s~Dg~i~iwd~~~~  918 (1092)
                                ...|++++|+|++          ++|++++.||.|++|++.++
T Consensus       344 ~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          344 AVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             CBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence                      9999999999998          79999999999999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.9e-32  Score=294.65  Aligned_cols=252  Identities=17%  Similarity=0.299  Sum_probs=213.1

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV  469 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v  469 (1092)
                      +.+|...|.+++|+|+|++||+|+.|++|+|||+.++.. ....++.+|.++|.+++|+++  ++  +|++|+.|++|++
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i   81 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI   81 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence            678999999999999999999999999999999975421 223378899999999999864  77  8999999999999


Q ss_pred             EECCCCc--eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccC-----
Q 001362          470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN-----  540 (1092)
Q Consensus       470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d-----  540 (1092)
                      ||+++++  .+..+.+|...|.+++|+|..++.+|++++.||.|++||++....  ...+..|...|.+++|+|+     
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence            9999874  567788999999999998865578999999999999999987642  4567788889999999997     


Q ss_pred             --------CCEEEEEecCCCCceeEEEEeCCCCe----EEEEEeeccccCCceEEEEEcCCC---CEEEEEeCCCcEEEE
Q 001362          541 --------GRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIW  605 (1092)
Q Consensus       541 --------g~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~---~~l~~~s~dg~i~iw  605 (1092)
                              +++|++++.    ++.|++||..+++    ....+.+|.   ..|.+++|+|++   .+|++++.|++|++|
T Consensus       162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~iW  234 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCIIW  234 (297)
T ss_dssp             --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC---CceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence                    578999886    5669999998765    566777777   899999999984   789999999999999


Q ss_pred             ECCCCc--e-EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001362          606 DMNKVQ--L-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       606 d~~~~~--~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      |+.++.  . ...+....+...|.+++|+|++++|++++.|+.|++|+...
T Consensus       235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            998753  1 22332233445689999999999999999999999999763

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=8.9e-32  Score=308.43  Aligned_cols=347  Identities=14%  Similarity=0.129  Sum_probs=246.8

Q ss_pred             ceeeecccCCCCceEEeecC-CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~sp-dg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      .....+.+|.+.|++++|+| +++ +||+|+.||.|+|||+.+++..........      .........+|...|.+++
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~  106 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQ  106 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEE
T ss_pred             cceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEE
Confidence            45577889999999999999 998 799999999999999999876653221100      0000001246999999999


Q ss_pred             ECC-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC---CCcEEEEEEeCCCcEEEEECCCCceeE
Q 001362          404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      |+| ++.+|++++.|+.|++||+.+++...   .+ .+...+.+++|++.   +.  ++++++.|+.|++||+.+++.+.
T Consensus       107 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~  180 (408)
T 4a11_B          107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSH  180 (408)
T ss_dssp             ECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCE
T ss_pred             EccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceee
Confidence            999 88899999999999999999986554   23 37778999999984   44  78999999999999999999999


Q ss_pred             EEecCCcCeEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCc-eEEe---------------cCCCCceEEEEEccCCC
Q 001362          480 SFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA-RVDY---------------DAPGLGCTRMAYSANGR  542 (1092)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~-~~~~---------------~~~~~~i~~~~~s~dg~  542 (1092)
                      .+.+|...|.+++|++  ++. ++++++.||.|++||++.... ...+               ..+...|.+++|+|+++
T Consensus       181 ~~~~~~~~v~~~~~~~--~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  258 (408)
T 4a11_B          181 ILQGHRQEILAVSWSP--RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL  258 (408)
T ss_dssp             EECCCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred             eecCCCCcEEEEEECC--CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence            9999999999999966  445 699999999999999987652 2222               45677899999999999


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc--cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC
Q 001362          543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  620 (1092)
                      ++++++.    ++.|++||+.+++....+.++..  ....+........+..+++++.++.|++||+.+++.+..+..+.
T Consensus       259 ~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~  334 (408)
T 4a11_B          259 HLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY  334 (408)
T ss_dssp             EEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred             EEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence            9999986    55699999999887655443321  01222222333445677778889999999999999999998664


Q ss_pred             CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcc
Q 001362          621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP  700 (1092)
Q Consensus       621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  700 (1092)
                        ..|.+++|+|++++|++++.||.|++|++.+.+.+.........   ..+.                     ......
T Consensus       335 --~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~~~  388 (408)
T 4a11_B          335 --KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLN---------------------PAFEDA  388 (408)
T ss_dssp             --SCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------------
T ss_pred             --CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccc---------------------ccccee
Confidence              46999999999999999999999999999988766544322111   1111                     123445


Q ss_pred             ceeeccccccceeccc
Q 001362          701 EISVEAENKSEVEKPL  716 (1092)
Q Consensus       701 l~s~~~d~~i~lw~~~  716 (1092)
                      ..+.+.++.+++|+..
T Consensus       389 ~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          389 WSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             ----------------
T ss_pred             ecccCccCceeecCCc
Confidence            5677788999999854

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=316.71  Aligned_cols=330  Identities=10%  Similarity=0.037  Sum_probs=248.9

Q ss_pred             CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001362          528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~  607 (1092)
                      -...|.+++|+|||+++++++.    +++|+  |...++.   +.+|.   ..|.+++|+|+|       .++.+.+|+.
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~----D~TV~--d~~~~~~---l~gh~---~~v~~V~FsPdg-------~~~~~~~~~~   74 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFP----DISIG--QPKYAKD---INCNS---KNLFHVKEFPLE-------FENKLDFELA   74 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSS----SEEEE--EECCCSC---CSSBG---GGTEEEEEECCC-------CCCTTTTSCC
T ss_pred             hhccEEEEEECCCCCEEEEEcC----Cceee--cccccce---ecCCC---ccEEEEEECCCC-------CcceEEEEeC
Confidence            3468899999999999999976    67788  7555544   35766   899999999998       4555555554


Q ss_pred             CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCc
Q 001362          608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS  687 (1092)
Q Consensus       608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  687 (1092)
                      +.   ...+.... ...|.+++|||+|.+||+++.||.+++|+...  .+..+. |...+                    
T Consensus        75 ~~---~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~--------------------  127 (588)
T 2j04_A           75 QQ---NGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL--------------------  127 (588)
T ss_dssp             CS---SCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS--------------------
T ss_pred             CC---ceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc--------------------
Confidence            32   22222122 45799999999999999999999999999543  222221 11110                    


Q ss_pred             eeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCC
Q 001362          688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND  767 (1092)
Q Consensus       688 ~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~  767 (1092)
                                                                   ....+.+++|||||+.|++++.||+|++|++..+.
T Consensus       128 ---------------------------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~  162 (588)
T 2j04_A          128 ---------------------------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS  162 (588)
T ss_dssp             ---------------------------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred             ---------------------------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence                                                         13358899999999999999999999999976531


Q ss_pred             cCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee---eEEe-cCCC
Q 001362          768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI-MPPS  843 (1092)
Q Consensus       768 ~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~---~~~~-~~~~  843 (1092)
                      ...         +++      ..+........+|...|.+++|+||| +++++.|+++++||+.+++.   .+++ .+|.
T Consensus       163 l~~---------~~~------i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~  226 (588)
T 2j04_A          163 ENT---------PEF------YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASR  226 (588)
T ss_dssp             TTC---------CCC------EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred             ccc---------ccc------eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence            100         000      00122222223588999999999999 55555689999999988774   3566 4788


Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEE--cCCCCEEEEEeCCCcEEEEEcCCCcee
Q 001362          844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--SDALNILVSSGGDAQIFVWDVDGWGIQ  921 (1092)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--spdg~~l~s~s~Dg~i~iwd~~~~~~~  921 (1092)
                      ..|.+++|+   ++.||+++ +++|++||+.+++......+|.+.|..++|  +||+..|+++++||+ ++|..+.    
T Consensus       227 ~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~----  297 (588)
T 2j04_A          227 RKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE----  297 (588)
T ss_dssp             SCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS----
T ss_pred             CcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc----
Confidence            899999998   37899887 699999999988874444489999999999  999999999999999 9999872    


Q ss_pred             eeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEE
Q 001362          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~  997 (1092)
                                          ++|+||+..++.. |+++++|+...+. +.. +.+ ...|.+++|||||+.+|+++
T Consensus       298 --------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~-~~~-~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          298 --------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNN-YET-TLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             --------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSS-SCC-EEEEEEEEECTTSSEEEEEE
T ss_pred             --------------------EEECCCceEEEEc-CCEEEEEECCCCc-eee-ecc-ceEEEEEEECCCCCEEEEEE
Confidence                                5699999988875 9999999976544 332 333 77899999999999999886

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7.6e-32  Score=304.73  Aligned_cols=290  Identities=12%  Similarity=0.103  Sum_probs=247.6

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +..|..+|.+++|+|++++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++  +|++++.|+.|++||
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence            45699999999999999999999999999999999875 113336789999999999999999  899999999999999


Q ss_pred             CCCCceeEEE--ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccCCCEEE
Q 001362          472 AVTGSRTYSF--EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       472 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      +.+++....+  ..|...|.+++|++  ++.+|++++.||.|++||++....    ......+...|.+++|+|++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  158 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA  158 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence            9998765444  67999999999965  678999999999999999998774    223356788999999999999999


Q ss_pred             EEecCCCCceeEEEEeC------------------CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001362          546 SCGTSKEGESFLVEWNE------------------SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~------------------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~  607 (1092)
                      +++.    ++.|++||+                  .+++.+..+.+|.   ..+.+++|+|+++++++++.|+.|++||+
T Consensus       159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  231 (372)
T 1k8k_C          159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADA  231 (372)
T ss_dssp             EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCC---CeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            9986    566999994                  4678888888777   89999999999999999999999999999


Q ss_pred             CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC--Cce-----------------------------
Q 001362          608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE--SNS-----------------------------  656 (1092)
Q Consensus       608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~--~~~-----------------------------  656 (1092)
                      .+++.+..+..+.  ..+.+++|+|++.+++++ .|+.|++|++.+  +..                             
T Consensus       232 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
T 1k8k_C          232 DKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK  308 (372)
T ss_dssp             GGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred             CCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence            9999999988663  468999999999988887 899999999987  321                             


Q ss_pred             ----------eeecccccCceeeeeecCCCccccccccCCceeecCCCCCCC---ccceeeccccccceecccc
Q 001362          657 ----------VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV---KPEISVEAENKSEVEKPLF  717 (1092)
Q Consensus       657 ----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~---~~l~s~~~d~~i~lw~~~~  717 (1092)
                                .....+|...|.++++.                     +++|   +++++++.||.|++|++..
T Consensus       309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~---------------------~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          309 ASSEGSAAAGAGLDSLHKNSVSQISVL---------------------SGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             C---------CCCSSSSSSCEEEEEEE---------------------ESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cccccCccccccccccccCCcceeEEe---------------------cCCCcceeeEEEecCCCceEEEEecC
Confidence                      11224788888888866                     3566   8999999999999999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.1e-30  Score=287.89  Aligned_cols=282  Identities=16%  Similarity=0.268  Sum_probs=236.9

Q ss_pred             ceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001362          337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  416 (1092)
Q Consensus       337 V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~  416 (1092)
                      .++|+||+++  +||+|. |++|+|||+.+|+.+....                 +.+|...|.+++|+|+|++||+|+.
T Consensus        28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~~V~~v~~~~~~~~l~sgs~   87 (318)
T 4ggc_A           28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGTS   87 (318)
T ss_dssp             CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCeEEEEEECCCCCEEEEEEC
Confidence            5789999987  578774 8999999999999876422                 5578999999999999999999999


Q ss_pred             CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEecCCcCeEEEeecc
Q 001362          417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHA  495 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~  495 (1092)
                      |++|++||+++++.+.   .+.+|...+.++.+  ++.  .+++++.++.+++|+..++ ..+..+.+|...+..+.+.+
T Consensus        88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (318)
T 4ggc_A           88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  160 (318)
T ss_dssp             TSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             CCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence            9999999999987655   67799988877655  455  7999999999999998876 45677889999999999854


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001362          496 KENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1092)
Q Consensus       496 ~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1092)
                        ++.++++++.||.|++||+.+++.    ......+...+..++++|++..++.... +..++.|++||...+......
T Consensus       161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~  237 (318)
T 4ggc_A          161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV  237 (318)
T ss_dssp             --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred             --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence              668999999999999999987653    3455667778999999998776553322 133778999999988876665


Q ss_pred             eeccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEE
Q 001362          572 QGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  649 (1092)
Q Consensus       572 ~~~~~~~~~v~~~~~~p~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  649 (1092)
                      ...    ..+..+.|+|++..+++++  .|+.|++||+.+++++..+..|.  ..|.+++|+|+|++|++++.||+|+||
T Consensus       238 ~~~----~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~~v~iW  311 (318)
T 4ggc_A          238 DAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLW  311 (318)
T ss_dssp             ECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             cce----eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence            443    5799999999999988765  79999999999999999998664  579999999999999999999999999


Q ss_pred             ECCCC
Q 001362          650 ETPES  654 (1092)
Q Consensus       650 ~~~~~  654 (1092)
                      |+.+.
T Consensus       312 d~~~~  316 (318)
T 4ggc_A          312 RCFEL  316 (318)
T ss_dssp             CCSCC
T ss_pred             ECCCC
Confidence            98754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-32  Score=310.25  Aligned_cols=245  Identities=11%  Similarity=0.136  Sum_probs=195.5

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001362          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      +...|.+++|+|+++++++++.||.|++|++.....                      .....+.  +|...|.+++|+|
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~----------------------~~~~~~~--~h~~~v~~~~~s~   65 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW----------------------KHARTFS--DHDKIVTCVDWAP   65 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE----------------------EECCCBC--CCSSCEEEEEECT
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce----------------------EEEEEEe--cCCceEEEEEEeC
Confidence            456899999999999999999999999999864310                      0111122  4899999999999


Q ss_pred             CCCEEEEEe-CCeEEEEEcCCce---eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce---eeEeecc-
Q 001362          813 NDAYLFSAS-GGVISLYIVMTFK---TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---VISKLEG-  884 (1092)
Q Consensus       813 dg~~l~~~s-dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~---~~~~l~~-  884 (1092)
                      ++++|++++ |+.|++||+.+++   ....+..|...|.+++|+| ++++|++|+.|+.|++||+.+++   ....+.+ 
T Consensus        66 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (377)
T 3dwl_C           66 KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP  144 (377)
T ss_dssp             TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred             CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence            999999998 7999999999877   6777888999999999999 89999999999999999999887   4778887 


Q ss_pred             ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee-------------eeeeeecCCCCcCCCCCceEEEEecCCCEE
Q 001362          885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-------------TCRSLQTPDGVMTLAPSETHIQFHKDQTRF  951 (1092)
Q Consensus       885 h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l  951 (1092)
                      |...|++++|+|++++|++++.|+.|++||+...+..             ...++... +|..   .|.+++|+|+|++|
T Consensus       145 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~v~~~~~sp~~~~l  220 (377)
T 3dwl_C          145 LRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG---WVHAVGFSPSGNAL  220 (377)
T ss_dssp             CCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS---SEEEEEECTTSSCE
T ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc---eEEEEEECCCCCEE
Confidence            9999999999999999999999999999999643211             12344444 4443   79999999999999


Q ss_pred             EE-EeCCcEEEEEcCCcee----eeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001362          952 LL-VHETHLAIYEAEELTC----LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       952 a~-~~d~~i~lwd~~~~~~----~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
                      ++ +.|+.|++||+.+++.    +.. +.+|...|.+++|+|||++|++++.|+.+ +|+..
T Consensus       221 ~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          221 AYAGHDSSVTIAYPSAPEQPPRALIT-VKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEEETTTEEC-CEECSTTSCEEECCC-EECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             EEEeCCCcEEEEECCCCCCcceeeEe-ecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            98 5789999999999887    544 56799999999999999999988766655 67665

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.5e-31  Score=310.79  Aligned_cols=301  Identities=13%  Similarity=0.199  Sum_probs=233.0

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC------------CcE
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG------------VSV  399 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~------------~~V  399 (1092)
                      .|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++.......        ...-....+.+|.            ..|
T Consensus        26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~V   96 (447)
T 3dw8_B           26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEKI   96 (447)
T ss_dssp             CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred             cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCce
Confidence            3577999999999998 699999999999999998763110000        0000011266898            889


Q ss_pred             EEEEECCCC--CEEEEEeCCCEEEEEEccCCCccc------------------------------------ceEE-Eccc
Q 001362          400 NRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSDAR------------------------------------QQLE-IDAH  440 (1092)
Q Consensus       400 ~~l~~spdg--~~las~~~d~~i~iwd~~~~~~~~------------------------------------~~~~-~~~h  440 (1092)
                      .+++|+|++  .+|++++.|++|++||+.++....                                    .... ..+|
T Consensus        97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  176 (447)
T 3dw8_B           97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH  176 (447)
T ss_dssp             CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred             EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence            999999998  899999999999999998743210                                    0001 3689


Q ss_pred             ccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC-CceeE-------EEecCCcCeEEEeecccCCc-cEEEEEecCCeE
Q 001362          441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTY-------SFEGHGAPVYSLCPHAKENI-HFIFSISVDGKI  511 (1092)
Q Consensus       441 ~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i  511 (1092)
                      ...|.+++|+|+++  +|++| .|+.|++||+.+ ++.+.       .+.+|...|.+++|++  ++ .+|++++.||.|
T Consensus       177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTI  251 (447)
T ss_dssp             SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred             CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeE
Confidence            99999999999999  78888 799999999984 44444       2568999999999965  55 799999999999


Q ss_pred             EEEEcCCCCc----eEEecCCCC------------ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-CeEEEEEeec
Q 001362          512 KAWLYDSLGA----RVDYDAPGL------------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGL  574 (1092)
Q Consensus       512 ~vwd~~~~~~----~~~~~~~~~------------~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~  574 (1092)
                      ++||+++...    ...+..+..            .|.+++|+|+|++|++++.     +.|++||+.+ ++.+..+.+|
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~  326 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVETYQVH  326 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCCEESC
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccceeecc
Confidence            9999998876    667777765            8999999999999998863     5699999997 8888888887


Q ss_pred             cccCC------------ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----------------------
Q 001362          575 QLQHN------------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------  619 (1092)
Q Consensus       575 ~~~~~------------~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----------------------  619 (1092)
                      .....            .+..++|+|++++|++|+.||.|++||+.+++.+......                       
T Consensus       327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (447)
T 3dw8_B          327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD  406 (447)
T ss_dssp             GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred             ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence            62111            1334899999999999999999999999998876422111                       


Q ss_pred             -------CCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001362          620 -------GGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       620 -------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                             .....|..++|+|++++||+++.++ +++|...
T Consensus       407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence                   1123578899999999999998875 7777643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.6e-32  Score=298.53  Aligned_cols=253  Identities=15%  Similarity=0.204  Sum_probs=205.6

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-  406 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-  406 (1092)
                      ..+.+|++.|++++|+|+|+ +||+|+.|++|+|||+.++.....                 ..+.+|...|.+++|+| 
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~   68 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHP   68 (316)
T ss_dssp             -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCG
T ss_pred             eecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCC
Confidence            46789999999999999998 699999999999999988753221                 12778999999999987 


Q ss_pred             -CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEEEECCCCce---eEE
Q 001362          407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---TYS  480 (1092)
Q Consensus       407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~~---~~~  480 (1092)
                       ++++||+|+.|++|++||+.++... ....+.+|...|.+++|+|+  +.  +|++|+.|++|++||+.++..   ...
T Consensus        69 ~~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~  145 (316)
T 3bg1_A           69 MYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKI  145 (316)
T ss_dssp             GGSSCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred             CCCCEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeee
Confidence             4899999999999999999986432 23367899999999999998  66  799999999999999987632   345


Q ss_pred             EecCCcCeEEEeecccC---------------CccEEEEEecCCeEEEEEcCCCC---ceEEecCCCCceEEEEEccCC-
Q 001362          481 FEGHGAPVYSLCPHAKE---------------NIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSANG-  541 (1092)
Q Consensus       481 ~~~~~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~dg-  541 (1092)
                      +.+|...|.+++|++..               ++.+|++|+.|++|++||++...   ....+..|...|.+++|+|++ 
T Consensus       146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~  225 (316)
T 3bg1_A          146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG  225 (316)
T ss_dssp             TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred             eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence            57899999999997652               14689999999999999997553   455678888999999999987 


Q ss_pred             ---CEEEEEecCCCCceeEEEEeCCCC---e-EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001362          542 ---RRLFSCGTSKEGESFLVEWNESEG---A-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  608 (1092)
Q Consensus       542 ---~~l~~~~~~~~~~~~i~iwd~~~~---~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~  608 (1092)
                         ++|++++.    ++.|++|+..+.   . ....+..|.   ..|.+++|+|++++|++++.|++|++|+..
T Consensus       226 ~~~~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          226 LPTSTIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFN---DVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CSCCEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CCCceEEEEcC----CCeEEEEEccCccccchhhhhhhcCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence               78999886    677999998763   1 223445555   899999999999999999999999999975

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.5e-31  Score=301.52  Aligned_cols=294  Identities=17%  Similarity=0.226  Sum_probs=245.2

Q ss_pred             eeecCCCCcEEEEEECCC----CCEEEEEeCCCEEEEEEccCCCcccceEEEc--ccccceeEEEEecC----CCcEEEE
Q 001362          390 ALVRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAP----CKQISVI  459 (1092)
Q Consensus       390 ~~l~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d----~~~l~l~  459 (1092)
                      .+..+|..+|.+++|+|+    ...+++++.++.|++||+.+++.+.......  .|...|.+++|+|+    ++  +|+
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~   89 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLA   89 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEE
Confidence            346689999999999994    4566666677799999999887665443332  26678999999999    55  799


Q ss_pred             EEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCCceEEEE
Q 001362          460 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMA  536 (1092)
Q Consensus       460 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~  536 (1092)
                      +|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+   ..+...|.+++
T Consensus        90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  168 (366)
T 3k26_A           90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD  168 (366)
T ss_dssp             EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred             EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence            9999999999999999999999999999999999652 5679999999999999999998888777   67888999999


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee-------------------------ccccCCceEEEEEcCCCC
Q 001362          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------------------LQLQHNSVSVVHFDTAKD  591 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~v~~~~~~p~~~  591 (1092)
                      |+|+++++++++.    ++.|++||+.+++....+..                         ...+...|.+++|+  ++
T Consensus       169 ~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~  242 (366)
T 3k26_A          169 YDLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD  242 (366)
T ss_dssp             ECTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT
T ss_pred             ECCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC
Confidence            9999999999986    55699999998765543332                         00133889999998  67


Q ss_pred             EEEEEeCCCcEEEEECCCCce--------------EEEEeCCCCCCCCceEEEccC--CCEEEEEeCCCeEEEEECCCCc
Q 001362          592 QILAAGDDHVIKIWDMNKVQL--------------LTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       592 ~l~~~s~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      ++++++.|+.|++||+.++..              +..+..+  ...|.+++|+|+  +++|++++.||.|++|++.+++
T Consensus       243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED  320 (366)
T ss_dssp             EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence            999999999999999987754              5666655  346899999999  9999999999999999999875


Q ss_pred             e----eeecccc--cCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001362          656 S----VDAAGVL--SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       656 ~----~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~  716 (1092)
                      .    ...+.+|  ...|.+++|+                      |+++++++++.|+.|++||+.
T Consensus       321 ~~~~~~~~~~~~~~~~~v~~~~~s----------------------~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          321 PHKAKCTTLTHHKCGAAIRQTSFS----------------------RDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             GGGCEEEEECCTTCCSCEEEEEEC----------------------TTSSEEEEEETTSEEEEEEC-
T ss_pred             CccccceEEcccccCCceEEEEeC----------------------CCCCeEEEEeCCCEEEEEEec
Confidence            3    3366666  6889988886                      788999999999999999964

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.6e-31  Score=297.31  Aligned_cols=293  Identities=13%  Similarity=0.164  Sum_probs=241.4

Q ss_pred             eeecCCCCcEEEEEECCCCCEEE-EEeC---CCEEEEEEccCCCcccceEEEcccccceeEEEEecC---CCcEEEEEEe
Q 001362          390 ALVRDPGVSVNRVVWSPDGSLLG-VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG  462 (1092)
Q Consensus       390 ~~l~~h~~~V~~l~~spdg~~la-s~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~  462 (1092)
                      .++.+|...|.+++|+|++..++ +|+.   |+.|++||+.+++....  ...+|...|.+++|+|+   +.  +|++|+
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~   87 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGD   87 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEE
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEec
Confidence            34678999999999999996655 5555   89999999998864432  22379999999999999   57  799999


Q ss_pred             CCCcEEEEECCCCc-eeEEEecCCcCeEEEeecc----cCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCC----ce
Q 001362          463 DDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHA----KENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL----GC  532 (1092)
Q Consensus       463 ~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~----~i  532 (1092)
                      .|+.|++||+.+++ .+..+.+|...|.++.|.+    ++++.+|++++.||.|++||+.... ....+..+..    .+
T Consensus        88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC  167 (357)
T ss_dssp             TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred             CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence            99999999999998 8899999999999997643    5678899999999999999999887 5666655443    78


Q ss_pred             EEEE----EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC---CCCEEEEEeCCCcEEEE
Q 001362          533 TRMA----YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT---AKDQILAAGDDHVIKIW  605 (1092)
Q Consensus       533 ~~~~----~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~~~s~dg~i~iw  605 (1092)
                      .+++    |+|+++++++++.    ++.|++||+.+++.... ..+.   ..|.+++|+|   ++.++++++.||.|++|
T Consensus       168 ~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~  239 (357)
T 3i2n_A          168 WTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVF  239 (357)
T ss_dssp             EEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred             EEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence            8888    7889999999976    56799999999987544 4444   7899999999   99999999999999999


Q ss_pred             ECCCCceEEEEe---CCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCCC-------------------ceeeeccc
Q 001362          606 DMNKVQLLTTID---AGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES-------------------NSVDAAGV  662 (1092)
Q Consensus       606 d~~~~~~~~~~~---~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~-------------------~~~~~~~~  662 (1092)
                      |+.+++....+.   ...+...|.+++|+|+++ ++++++.||.|++|++..+                   +.+..+.+
T Consensus       240 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  319 (357)
T 3i2n_A          240 DMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL  319 (357)
T ss_dssp             EEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred             eCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence            998766544332   112345699999999998 8999999999999998754                   34566777


Q ss_pred             ccCceeeeeecCCCccccccccCCceeecCCCCCCCccce-eeccccccceeccc
Q 001362          663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI-SVEAENKSEVEKPL  716 (1092)
Q Consensus       663 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-s~~~d~~i~lw~~~  716 (1092)
                      |...|.+++|+                      |+++.++ +++.|+.+++|++.
T Consensus       320 ~~~~v~~~~~s----------------------~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          320 STQPISSLDWS----------------------PDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             CSSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEEC
T ss_pred             CCCCeeEEEEc----------------------CCCCeEEEEecCCCcEEEEECC
Confidence            88888888886                      7788888 89999999999976

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-30  Score=285.76  Aligned_cols=281  Identities=15%  Similarity=0.174  Sum_probs=247.1

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      .+.+|.+.|.+++| |++++|++++.||.|++||+.+++...   .+..|...|.+++|+|+++  ++++++.|+.|++|
T Consensus        13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~   86 (313)
T 3odt_A           13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV   86 (313)
T ss_dssp             EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred             HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence            37899999999999 999999999999999999998875444   5678999999999999999  89999999999999


Q ss_pred             ECCCC---ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCCEEEE
Q 001362          471 DAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFS  546 (1092)
Q Consensus       471 d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~  546 (1092)
                      ++...   +.+..+.+|...|.+++|    ++.++++++.||.|++||  .......+..+...+.++++.| +++++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred             EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence            98754   667888999999999998    346999999999999999  5666777888999999999988 9999999


Q ss_pred             EecCCCCceeEEEEeCCCCeEEEEEee-ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCC
Q 001362          547 CGTSKEGESFLVEWNESEGAIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1092)
                      ++.    ++.|++||  .++....+.. +.   ..+.+++|+|++. +++++.||.|++||+.+++.+..+..+.  ..+
T Consensus       161 ~~~----d~~i~i~d--~~~~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i  228 (313)
T 3odt_A          161 ASA----DKTIKLWQ--NDKVIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFV  228 (313)
T ss_dssp             EET----TSCEEEEE--TTEEEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS--SCE
T ss_pred             EEC----CCCEEEEe--cCceEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC--ceE
Confidence            986    55699999  5666667766 44   8899999999987 9999999999999999999999988664  469


Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec
Q 001362          626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  705 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  705 (1092)
                      .+++|+|++ .+++++.||.|++||+.+++....+..+...+.+++++                      |+++ +++++
T Consensus       229 ~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~-~~~~~  284 (313)
T 3odt_A          229 YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM----------------------SNGD-IIVGS  284 (313)
T ss_dssp             EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC----------------------TTSC-EEEEE
T ss_pred             EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc----------------------cCCC-EEEEe
Confidence            999999999 58899999999999999999999999999999999997                      5666 66789


Q ss_pred             cccccceecccccc
Q 001362          706 AENKSEVEKPLFAR  719 (1092)
Q Consensus       706 ~d~~i~lw~~~~~~  719 (1092)
                      .|+.+++|++....
T Consensus       285 ~dg~i~iw~~~~~~  298 (313)
T 3odt_A          285 SDNLVRIFSQEKSR  298 (313)
T ss_dssp             TTSCEEEEESCGGG
T ss_pred             CCCcEEEEeCCCCc
Confidence            99999999987543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.9e-31  Score=294.98  Aligned_cols=287  Identities=9%  Similarity=0.054  Sum_probs=242.0

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      ....+|.+.|++++|+|+++ +|++|+.|+.|+|||+.+++....                ...+.+|...|.+++|+|+
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~   67 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDN   67 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEES
T ss_pred             ecccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCC
Confidence            44568999999999999998 689999999999999998872211                0014479999999999999


Q ss_pred             CC-EEEEEeCCCEEEEEEc-cCCCcccceEEEcc--cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC---------
Q 001362          408 GS-LLGVAYSKHIVQLYAY-HGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---------  474 (1092)
Q Consensus       408 g~-~las~~~d~~i~iwd~-~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---------  474 (1092)
                      ++ +|++|+.|+.|++||+ .+++.    ..+.+  |...|.+++|+| +.  .+++++.|+.|++||+.+         
T Consensus        68 ~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~  140 (342)
T 1yfq_A           68 TDLQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             SSEEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             CCcEEEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEccccccccccccc
Confidence            99 9999999999999999 87653    35778  999999999999 77  799999999999999988         


Q ss_pred             CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCc--eEEecCCCCceEEEEEcc-CCCEEEEEecC
Q 001362          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGA--RVDYDAPGLGCTRMAYSA-NGRRLFSCGTS  550 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~--~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~  550 (1092)
                      ++++..+. |...|.+++|++  ++  +++++.||.|++||++. ...  ......+...+.+++|+| +++++++++. 
T Consensus       141 ~~~~~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-  214 (342)
T 1yfq_A          141 NLNSNNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI-  214 (342)
T ss_dssp             ESCSSSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-
T ss_pred             CCeeeEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-
Confidence            77777776 889999999964  43  99999999999999988 443  335556777899999999 9999999986 


Q ss_pred             CCCceeEEEEeCCCC------eEEEEEeeccc------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001362          551 KEGESFLVEWNESEG------AIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~------~~~~~~~~~~~------~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  618 (1092)
                         ++.|++|+...+      +....+..|..      +...|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus       215 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  291 (342)
T 1yfq_A          215 ---DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             ---TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             ---CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence               667999999877      77778887751      124899999999999999999999999999999999888875


Q ss_pred             CCCCCCCceEEEccCCCEEEEEeCCCe-EEEEE
Q 001362          619 GGGLPENPRICFNKNGTLLAVIANENR-IKILE  650 (1092)
Q Consensus       619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iw~  650 (1092)
                      +. ...|.+++  |++++|++++.||. .+.+.
T Consensus       292 ~h-~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          292 FN-EDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CS-SSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             cc-CCCceEec--CCCCeEEEEecCCccccccc
Confidence            51 24588888  99999999999998 54444

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=9.7e-31  Score=301.91  Aligned_cols=280  Identities=21%  Similarity=0.311  Sum_probs=241.5

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      ....+|...|.|++|  +++ ++++|+.||+|++||+.+++.+..                   +.+|...|.+++|  +
T Consensus       127 ~~~~~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~  182 (435)
T 1p22_A          127 HCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--D  182 (435)
T ss_dssp             ECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--C
T ss_pred             ecccCCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--C
Confidence            334567778999887  777 689999999999999999987765                   7789999999999  8


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee---EEEecC
Q 001362          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGH  484 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~---~~~~~~  484 (1092)
                      +++|++|+.||+|++||+.+++.+.   .+.+|...|.+++|++  .  .+++|+.|+.|++||+.+++..   ..+.+|
T Consensus       183 ~~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  255 (435)
T 1p22_A          183 ERVIITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGH  255 (435)
T ss_dssp             SSEEEEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence            8999999999999999999987655   6789999999999974  4  7999999999999999988766   677899


Q ss_pred             CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001362          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      ...|.++++    ++.++++|+.||.|++||+++.+....+..+...+.++.+  +++++++++.    ++.|++||..+
T Consensus       256 ~~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~  325 (435)
T 1p22_A          256 RAAVNVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIEC  325 (435)
T ss_dssp             SSCEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTT
T ss_pred             CCcEEEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCC
Confidence            999999998    5579999999999999999999999999999999999988  5789999886    56699999999


Q ss_pred             CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------eEEEEeCCCCCCCCceEEEccCCC
Q 001362          565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------LLTTIDAGGGLPENPRICFNKNGT  635 (1092)
Q Consensus       565 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~~~  635 (1092)
                      ++.+..+.+|.   ..|.+++|  ++.++++|+.||.|++||+.++.         .+..+..|.  ..|.+++|  ++.
T Consensus       326 ~~~~~~~~~h~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~--~~~  396 (435)
T 1p22_A          326 GACLRVLEGHE---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQF--DEF  396 (435)
T ss_dssp             CCEEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEE--CSS
T ss_pred             CCEEEEEeCCc---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC--CCeEEEEe--CCC
Confidence            99999999887   88999998  77899999999999999997766         677776554  46899999  788


Q ss_pred             EEEEEeCCCeEEEEECCCCcee
Q 001362          636 LLAVIANENRIKILETPESNSV  657 (1092)
Q Consensus       636 ~l~~~~~dg~i~iw~~~~~~~~  657 (1092)
                      +|++++.||.|++||+.+....
T Consensus       397 ~l~s~s~Dg~i~iwd~~~~~~~  418 (435)
T 1p22_A          397 QIVSSSHDDTILIWDFLNDPAA  418 (435)
T ss_dssp             CEEECCSSSEEEEEC-------
T ss_pred             EEEEEeCCCEEEEEECCCCCCc
Confidence            9999999999999999876443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.1e-31  Score=295.32  Aligned_cols=294  Identities=17%  Similarity=0.203  Sum_probs=241.8

Q ss_pred             CCcceeeecccCCCCceEEeecCC---CceEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCCCC
Q 001362          322 FPKTVAQTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1092)
Q Consensus       322 ~p~~~~~~l~~h~~~V~~v~~spd---g~~llasg~~d~~v~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~  397 (1092)
                      .|...+..+.+|.+.|++++|+|+   |+ +|++|+.||.|+|||+.+ +..+..                  .+.+|..
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~   87 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTG   87 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSS
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccC
Confidence            456677889999999999999999   56 799999999999999998 444311                  1667999


Q ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEE--ecCCCcEEEEEEeCCCcEEEEECCCC
Q 001362          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      .|.+++|+|++++|++++.|+.|++||+.+++.+.    +.+|...|.+++|  ++++.  ++++++.|+.|++||+.++
T Consensus        88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~  161 (368)
T 3mmy_A           88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSS  161 (368)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCS
T ss_pred             CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCC
Confidence            99999999999999999999999999999876443    5679999999999  88888  8999999999999999999


Q ss_pred             ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEccCCCE----EEEEec
Q 001362          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRR----LFSCGT  549 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg~~----l~~~~~  549 (1092)
                      +.+..+..+. .+.++.+.    ...+++++.++.+++|+++.........  .....+..+++.++...    +++++.
T Consensus       162 ~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (368)
T 3mmy_A          162 NPMMVLQLPE-RCYCADVI----YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI  236 (368)
T ss_dssp             SCSEEEECSS-CEEEEEEE----TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred             cEEEEEecCC-CceEEEec----CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence            9999998665 56666553    2478999999999999998776554332  23445667777666654    888775


Q ss_pred             CCCCceeEEEEeCCCC---eEEEEEeecccc---------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001362          550 SKEGESFLVEWNESEG---AIKRTYQGLQLQ---------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~---~~~~~~~~~~~~---------~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                          ++.|++||....   ..+..+.+|...         ...|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus       237 ----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (368)
T 3mmy_A          237 ----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE  312 (368)
T ss_dssp             ----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             ----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence                667999999887   556677776610         1169999999999999999999999999999999998887


Q ss_pred             CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001362          618 AGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      .+  ...|.+++|+|++++|++++.|+..+.|+.
T Consensus       313 ~~--~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          313 QL--DQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             CC--SSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             CC--CCCceEEEECCCCCeEEEEecccccccccc
Confidence            65  346999999999999999999875555443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.3e-30  Score=299.14  Aligned_cols=281  Identities=19%  Similarity=0.237  Sum_probs=242.4

Q ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001362          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  477 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~  477 (1092)
                      ..+.|+||++ ++||+|. |++|+|||..+|+..... .+.+|...|++++|+|||+  +|++|+.|++|+|||+++++.
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~-~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR  181 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEE-EecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence            4678999986 4788775 899999999999765532 4567888999999999999  899999999999999999999


Q ss_pred             eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001362          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1092)
Q Consensus       478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1092)
                      +..+.+|...+.++++    ++.+|++|+.|+.+++||...... ...+..|...+..+.++|+++++++++.    ++.
T Consensus       182 ~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~----D~~  253 (420)
T 4gga_A          182 LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNL  253 (420)
T ss_dssp             EEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred             EEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----ccc
Confidence            9999999999999877    447999999999999999987554 4567889999999999999999999986    566


Q ss_pred             EEEEeCCCCeE----EEEEeeccccCCceEEEEEcCCCCEE-EE--EeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001362          557 LVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQI-LA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1092)
Q Consensus       557 i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~p~~~~l-~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1092)
                      +++|+..+++.    +.....|.   ..|.+++|+|.+..+ ++  |+.|++|++||+.+++....+..+.   .+.++.
T Consensus       254 v~i~~~~~~~~~~~~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~  327 (420)
T 4gga_A          254 VNVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSIL  327 (420)
T ss_dssp             EEEEESSCCSSCSCCSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEEEEE
T ss_pred             ceEEeeccccccceeeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---ceeeee
Confidence            99999987653    34445555   899999999986554 44  3579999999999999999887653   478999


Q ss_pred             EccCCCEEEEEe--CCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001362          630 FNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       630 ~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      |+|+++.+++++  .|+.|+|||+.+++.+..+.+|...|.+++|+                      |||+++++++.|
T Consensus       328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D  385 (420)
T 4gga_A          328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAAD  385 (420)
T ss_dssp             EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred             ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecC
Confidence            999999998876  68999999999999999999999999999996                      789999999999


Q ss_pred             cccceecccccc
Q 001362          708 NKSEVEKPLFAR  719 (1092)
Q Consensus       708 ~~i~lw~~~~~~  719 (1092)
                      ++|++|++....
T Consensus       386 ~tvriWdv~~~~  397 (420)
T 4gga_A          386 ETLRLWRCFELD  397 (420)
T ss_dssp             TEEEEECCSCSS
T ss_pred             CeEEEEECCCCC
Confidence            999999976443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=1.3e-30  Score=297.70  Aligned_cols=298  Identities=13%  Similarity=0.165  Sum_probs=241.8

Q ss_pred             CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CCCEEEE
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGV  413 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las  413 (1092)
                      ....+++++|+...++++|+.||.|+||++........               ....+.+|.+.|.+++|+| ++++||+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s   99 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS   99 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence            35667999999876777789999999999966432210               0112678999999999999 9999999


Q ss_pred             EeCCCEEEEEEccCCCcc----cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE--ecCCcC
Q 001362          414 AYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAP  487 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~~~  487 (1092)
                      |+.||.|++||+.++...    .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+  .+|...
T Consensus       100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  178 (402)
T 2aq5_A          100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT  178 (402)
T ss_dssp             EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred             EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence            999999999999987432    233468899999999999999843 7999999999999999999999999  889999


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCc-eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001362          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      |.+++|++  ++.+|++++.||.|++||+++.+....+ ..+... +..++|+|++++++++.. +..++.|++||..++
T Consensus       179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHL  255 (402)
T ss_dssp             EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBC
T ss_pred             eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccc
Confidence            99999965  6789999999999999999998888777 566654 899999999999888732 123788999999987


Q ss_pred             eE-EEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCce-EEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001362          566 AI-KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       566 ~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      +. +......  +...+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++  .
T Consensus       256 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~  331 (402)
T 2aq5_A          256 EEPLSLQELD--TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K  331 (402)
T ss_dssp             SSCSEEEECC--CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred             cCCceEEecc--CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence            65 3333211  1367999999999999975 55799999999999884 555544444467999999999998764  5


Q ss_pred             CCeEEEEECCCCc
Q 001362          643 ENRIKILETPESN  655 (1092)
Q Consensus       643 dg~i~iw~~~~~~  655 (1092)
                      ++.+++|++.++.
T Consensus       332 ~~~~~~~~l~~~~  344 (402)
T 2aq5_A          332 CEIARFYKLHERK  344 (402)
T ss_dssp             TEEEEEEEEETTE
T ss_pred             ceeEEEEEcCCCc
Confidence            6799999998763

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.98  E-value=3.1e-31  Score=291.08  Aligned_cols=251  Identities=18%  Similarity=0.318  Sum_probs=205.5

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEE
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK  468 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~  468 (1092)
                      ++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++  ++  +|++|+.|++|+
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~   84 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI   84 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence            36789999999999999999999999999999999886421 23368899999999999863  67  799999999999


Q ss_pred             EEECCCC--ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEccC---
Q 001362          469 VWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN---  540 (1092)
Q Consensus       469 vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d---  540 (1092)
                      +||++++  +.+..+.+|...|.+++|+|..++.+|++++.||+|++||+.....   ...+..|...+.+++|+|+   
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            9999987  4667888999999999998876688999999999999999987643   2345667778999999997   


Q ss_pred             --------------CCEEEEEecCCCCceeEEEEeCCCC---eEEEEEeeccccCCceEEEEEcCCC----CEEEEEeCC
Q 001362          541 --------------GRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDD  599 (1092)
Q Consensus       541 --------------g~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~p~~----~~l~~~s~d  599 (1092)
                                    +++|++++.    ++.|++||...+   +.+..+.+|.   ..|.+++|+|++    .+|++++.|
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~---~~V~~v~~sp~~~~~~~~las~s~D  237 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHS---DWVRDVAWAPSIGLPTSTIASCSQD  237 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCS---SCEEEEECCCCSSCSCCEEEEEETT
T ss_pred             ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCC---CceEEEEecCCCCCCCceEEEEcCC
Confidence                          468888875    667999999755   4566777777   899999999986    789999999


Q ss_pred             CcEEEEECCCCc----eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001362          600 HVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       600 g~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      ++|++|++.+..    ....+..+  ...|.+++|+|++++|++++.|+.|++|+...
T Consensus       238 ~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          238 GRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             CEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             CeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            999999987631    11223322  34689999999999999999999999999763

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=5.1e-30  Score=292.35  Aligned_cols=285  Identities=15%  Similarity=0.156  Sum_probs=242.4

Q ss_pred             ecCCCCc--EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001362          392 VRDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1092)
Q Consensus       392 l~~h~~~--V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  469 (1092)
                      ..+|...  +.+++|++  ..+++++.|+.|++||+.+++.....  ...|...|.+++|+|+++  +|++|+.||.|++
T Consensus        87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~i  160 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDI  160 (401)
T ss_dssp             CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred             CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEE
Confidence            3355554  45566664  56888889999999999998755422  223889999999999999  8999999999999


Q ss_pred             EECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001362          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      ||+.+++.+..+.+|...|.+++|    ++.++++++.||.|++||++. ......+..|...|.+++|+|+++++++++
T Consensus       161 wd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  236 (401)
T 4aez_A          161 YDVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG  236 (401)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EECcCCeEEEEecCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence            999999999999999999999998    346999999999999999994 555667888999999999999999999998


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE-Ee--CCCcEEEEECCCCceEEEEeCCCCCCCC
Q 001362          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AG--DDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1092)
                      .    ++.|++||+.+++.+..+..|.   ..|.+++|+|++..+++ ++  .|+.|++||+.+++.+..+..+   ..+
T Consensus       237 ~----d~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v  306 (401)
T 4aez_A          237 N----DNVVQIWDARSSIPKFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQV  306 (401)
T ss_dssp             T----TSCEEEEETTCSSEEEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCE
T ss_pred             C----CCeEEEccCCCCCccEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcE
Confidence            6    5569999999999998888877   89999999998755554 44  6999999999999999888754   358


Q ss_pred             ceEEEccCCCEEEEEe--CCCeEEEEECCCCceee--ecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001362          626 PRICFNKNGTLLAVIA--NENRIKILETPESNSVD--AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1092)
                      .+++|+|+++++++++  .||.|++|++.++....  .+.+|...|.+++++                      |+++++
T Consensus       307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l  364 (401)
T 4aez_A          307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS----------------------PDGRIL  364 (401)
T ss_dssp             EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC----------------------TTSSEE
T ss_pred             EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC----------------------CCCCEE
Confidence            9999999999999954  89999999999865444  466888899988886                      789999


Q ss_pred             eeeccccccceeccccc
Q 001362          702 ISVEAENKSEVEKPLFA  718 (1092)
Q Consensus       702 ~s~~~d~~i~lw~~~~~  718 (1092)
                      ++++.|+.+++|++..+
T Consensus       365 ~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          365 STAASDENLKFWRVYDG  381 (401)
T ss_dssp             EEECTTSEEEEEECCC-
T ss_pred             EEEeCCCcEEEEECCCC
Confidence            99999999999998744

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=8.3e-30  Score=285.02  Aligned_cols=265  Identities=10%  Similarity=0.117  Sum_probs=222.4

Q ss_pred             eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001362          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      ...+.+|++.|++++|+|+|+ +||+|+.||.|+|||+.++......               ...+.+|...|.+++|+|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~   67 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWAS   67 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECC
T ss_pred             cccCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcC
Confidence            356789999999999999998 6899999999999999987533211               112678999999999999


Q ss_pred             --CCCEEEEEeCCCEEEEEEccCCCcc------cceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEEEECCCCc
Q 001362          407 --DGSLLGVAYSKHIVQLYAYHGGSDA------RQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS  476 (1092)
Q Consensus       407 --dg~~las~~~d~~i~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~  476 (1092)
                        |+++|++++.|+.|++||+.+++..      .....+.+|...|.+++|+|+  +.  ++++++.|+.|++||+.+++
T Consensus        68 ~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~  145 (351)
T 3f3f_A           68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPS  145 (351)
T ss_dssp             GGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTT
T ss_pred             CCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChH
Confidence              6999999999999999999987431      334467899999999999999  88  89999999999999999887


Q ss_pred             eeEEEe-------------cCCcCeEEEeeccc-CCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccC
Q 001362          477 RTYSFE-------------GHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN  540 (1092)
Q Consensus       477 ~~~~~~-------------~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d  540 (1092)
                      .+..+.             +|...+.+++|++. .++.++++++.++.+.+|+......  ...+..|...|.+++|+|+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~  225 (351)
T 3f3f_A          146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS  225 (351)
T ss_dssp             CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCC
T ss_pred             HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCC
Confidence            665443             57888999999764 1367999999999998888777665  5567778889999999999


Q ss_pred             C----CEEEEEecCCCCceeEEEEeCCCC----------------------------------------------eEEEE
Q 001362          541 G----RRLFSCGTSKEGESFLVEWNESEG----------------------------------------------AIKRT  570 (1092)
Q Consensus       541 g----~~l~~~~~~~~~~~~i~iwd~~~~----------------------------------------------~~~~~  570 (1092)
                      +    ++|++++.    ++.|++||+.++                                              +.+..
T Consensus       226 ~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (351)
T 3f3f_A          226 IGRWYQLIATGCK----DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE  301 (351)
T ss_dssp             SSCSSEEEEEEET----TSCEEEEEEEECC---------------------------------------CCSEEEEEEEE
T ss_pred             CCCcceEEEEEcC----CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE
Confidence            8    78999876    566999999875                                              55566


Q ss_pred             EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001362          571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  616 (1092)
Q Consensus       571 ~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~  616 (1092)
                      +.+|.   ..|.+++|+|++++|++++.||.|++|++.+++....+
T Consensus       302 ~~~h~---~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          302 HDDHN---GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ECTTS---SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             Eeccc---ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            66666   89999999999999999999999999999988766554

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=2.1e-29  Score=277.77  Aligned_cols=277  Identities=19%  Similarity=0.252  Sum_probs=236.8

Q ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001362          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      .++|+||+++ +||+| .|++|+|||+.+++.++.. .+.+|...|++++|+|+++  ++++|+.|++|++||+++++.+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence            5779999986 77776 5899999999999866533 4567888999999999999  8999999999999999999999


Q ss_pred             EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001362          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                      ..+.+|...+.++.+    ++..+++++.++.+++|+...... ...+..|...+..+.++++++++++++.    ++.|
T Consensus       103 ~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i  174 (318)
T 4ggc_A          103 RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLV  174 (318)
T ss_dssp             EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred             EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec----Ccce
Confidence            999999999988765    346899999999999999887655 4567888899999999999999999986    5679


Q ss_pred             EEEeCCCCeEE----EEEeeccccCCceEEEEEcCCCCEEE---EEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001362          558 VEWNESEGAIK----RTYQGLQLQHNSVSVVHFDTAKDQIL---AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       558 ~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~l~---~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                      ++||..+++..    .....+   ...|..+.++|++..++   +++.+++|++||.............   ..+..++|
T Consensus       175 ~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~---~~v~~~~~  248 (318)
T 4ggc_A          175 NVWPSAPGEGGWVPLQTFTQH---QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILW  248 (318)
T ss_dssp             EEEESSCBTTBSCCSEEECCC---CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS---SCEEEEEE
T ss_pred             eEEECCCCcccccceeeeccc---CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce---eeeeeeee
Confidence            99999887543    223333   37899999999876543   4568899999999998887776544   34889999


Q ss_pred             ccCCCEEEEEe--CCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccc
Q 001362          631 NKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  708 (1092)
Q Consensus       631 s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  708 (1092)
                      +|+++.+++++  .|+.|++||+.+++.+..+.+|...|.+++|+                      ||++++++++.|+
T Consensus       249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D~  306 (318)
T 4ggc_A          249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAADE  306 (318)
T ss_dssp             ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETTT
T ss_pred             cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecCC
Confidence            99999888765  68999999999999999999999999999996                      7899999999999


Q ss_pred             ccceeccc
Q 001362          709 KSEVEKPL  716 (1092)
Q Consensus       709 ~i~lw~~~  716 (1092)
                      +|++||+.
T Consensus       307 ~v~iWd~~  314 (318)
T 4ggc_A          307 TLRLWRCF  314 (318)
T ss_dssp             EEEEECCS
T ss_pred             eEEEEECC
Confidence            99999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=5.7e-30  Score=297.40  Aligned_cols=253  Identities=14%  Similarity=0.227  Sum_probs=207.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCc--------ccceEEEcccc------------cceeEEEEecCC-
Q 001362          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHV------------GNVNDLAFSAPC-  453 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~~~~h~------------~~v~~~~~s~d~-  453 (1092)
                      |.+.|.+++|+|+|++||+|+.||.|+|||+.+++.        ......+.+|.            ..|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            678999999999999999999999999999998752        11244678998            889999999998 


Q ss_pred             -CcEEEEEEeCCCcEEEEECCCCcee---------------------------------------EE-EecCCcCeEEEe
Q 001362          454 -KQISVITCGDDKTIKVWDAVTGSRT---------------------------------------YS-FEGHGAPVYSLC  492 (1092)
Q Consensus       454 -~~l~l~s~~~d~~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~  492 (1092)
                       .  .+++++.|++|++||+.++...                                       .. ..+|...|.+++
T Consensus       107 ~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          107 AA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             SS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             cc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence             5  7999999999999998775432                                       12 367999999999


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEE--------ecCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCC
Q 001362          493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      |++  ++.+|++| .||.|++||++.......        +..|...|.+++|+|++ +++++++.    ++.|++||+.
T Consensus       185 ~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~  257 (447)
T 3dw8_B          185 INS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDMR  257 (447)
T ss_dssp             ECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEETT
T ss_pred             EcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEECc
Confidence            966  67899998 899999999985443332        55778899999999999 89999986    5679999999


Q ss_pred             CCeE----EEEEeeccc---------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCC-----
Q 001362          564 EGAI----KRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPE-----  624 (1092)
Q Consensus       564 ~~~~----~~~~~~~~~---------~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~-----  624 (1092)
                      +++.    +..+.++..         +...|.+++|+|+++++++++. +.|++||+.+ ++.+..+..+.....     
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~  336 (447)
T 3dw8_B          258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL  336 (447)
T ss_dssp             TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred             CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence            9887    677777660         0128999999999999999999 9999999997 888888876643111     


Q ss_pred             --------CceEEEccCCCEEEEEeCCCeEEEEECCCCcee
Q 001362          625 --------NPRICFNKNGTLLAVIANENRIKILETPESNSV  657 (1092)
Q Consensus       625 --------v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  657 (1092)
                              +..++|+|++++|++++.||.|++||+.+++.+
T Consensus       337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence                    234999999999999999999999999988665

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.2e-30  Score=288.79  Aligned_cols=255  Identities=17%  Similarity=0.302  Sum_probs=217.6

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV  469 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v  469 (1092)
                      +.+|...|.+++|+|++++||+|+.|+.|+|||+..+. ......+.+|...|++++|+++  ++  +|++++.|+.|++
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i   83 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI   83 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence            77899999999999999999999999999999998432 1233468899999999999987  77  8999999999999


Q ss_pred             EECCCCc--eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEcc------
Q 001362          470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------  539 (1092)
Q Consensus       470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~------  539 (1092)
                      ||+.+++  .+..+.+|...|.+++|++..++.+|++++.||.|++||+....  ....+..+...|.+++|+|      
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence            9999997  77888899999999999776437899999999999999998874  4456677888999999999      


Q ss_pred             -------CCCEEEEEecCCCCceeEEEEeCCCCe----EEEEEeeccccCCceEEEEEcCC---CCEEEEEeCCCcEEEE
Q 001362          540 -------NGRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW  605 (1092)
Q Consensus       540 -------dg~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~s~dg~i~iw  605 (1092)
                             ++.++++++.    ++.|++||+.++.    ....+.+|.   ..|.+++|+|+   +.++++++.||.|++|
T Consensus       164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw  236 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW  236 (379)
T ss_dssp             ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence                   6999999986    5569999998764    445666666   89999999999   8999999999999999


Q ss_pred             ECCCCc---eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCce
Q 001362          606 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS  656 (1092)
Q Consensus       606 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~  656 (1092)
                      |+.++.   .........+...+.+++|+|++++|++++.||.|++|++.....
T Consensus       237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~  290 (379)
T 3jrp_A          237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK  290 (379)
T ss_dssp             EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred             eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence            999875   333333333456789999999999999999999999999886543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.9e-30  Score=288.97  Aligned_cols=263  Identities=13%  Similarity=0.151  Sum_probs=216.5

Q ss_pred             eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001362          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      ++.++.+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+.....                 ..+.+|...|.+++|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~-----------------~~~~~h~~~v~~~~~~   64 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWA   64 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEEC
T ss_pred             ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceee-----------------eEecCCCCcEEEEEeC
Confidence            4577899999999999999998 689999999999999984332211                 1267899999999999


Q ss_pred             CC--CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEEEECCCCc--eeE
Q 001362          406 PD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTY  479 (1092)
Q Consensus       406 pd--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~--~~~  479 (1092)
                      |+  +++|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|+  +.  ++++++.|+.|++||+.++.  ...
T Consensus        65 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~  141 (379)
T 3jrp_A           65 HPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPI  141 (379)
T ss_dssp             CGGGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEE
T ss_pred             CCCCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeE
Confidence            87  999999999999999999987521 23367789999999999999  88  89999999999999999874  445


Q ss_pred             EEecCCcCeEEEeecccC-----------CccEEEEEecCCeEEEEEcCCCCce----EEecCCCCceEEEEEccC---C
Q 001362          480 SFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSAN---G  541 (1092)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~d---g  541 (1092)
                      .+.+|...|.+++|++..           ++.++++++.||.|++||++.....    ..+..|...|.+++|+|+   +
T Consensus       142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  221 (379)
T 3jrp_A          142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  221 (379)
T ss_dssp             EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence            677899999999997742           5789999999999999999876643    466778889999999999   8


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 001362          542 RRLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL  613 (1092)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~  613 (1092)
                      ++|++++.    ++.|++||+.++...  ........+...|.+++|+|+++++++++.||.|++|++..+...
T Consensus       222 ~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  291 (379)
T 3jrp_A          222 SYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW  291 (379)
T ss_dssp             EEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred             CeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence            99999986    566999999887421  112121123478999999999999999999999999999865433

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=2e-29  Score=290.95  Aligned_cols=275  Identities=16%  Similarity=0.241  Sum_probs=239.2

Q ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001362          393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1092)
Q Consensus       393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~  472 (1092)
                      .+|...|.+++|  |+++|++|+.||.|++||+.+++...   .+.+|.+.|.+++|  +++  ++++|+.||+|++||+
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence            357778998887  89999999999999999999987555   68899999999999  677  8999999999999999


Q ss_pred             CCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEccCCCEEEEEec
Q 001362          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      .+++.+..+.+|...|.+++|+    +.++++++.||.|++||+.+....   ..+..+...|.++++  +++++++++.
T Consensus       201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~  274 (435)
T 1p22_A          201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG  274 (435)
T ss_dssp             SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred             CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence            9999999999999999999984    359999999999999999987765   567788889999998  7889999986


Q ss_pred             CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001362          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1092)
                          ++.|++||+.+++.+..+.+|.   ..|.++.++  ++++++|+.||.|++||+.+++.+..+..+.  ..|.+++
T Consensus       275 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~  343 (435)
T 1p22_A          275 ----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIR  343 (435)
T ss_dssp             ----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEE
T ss_pred             ----CCeEEEEECCcCcEEEEEcCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEE
Confidence                6679999999999999999887   889999884  6799999999999999999999999988654  4588888


Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCCc---------eeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcc
Q 001362          630 FNKNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP  700 (1092)
Q Consensus       630 ~s~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  700 (1092)
                      |  ++.++++++.||.|++||+.++.         .+..+.+|...|.++++.                        ++.
T Consensus       344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------------------------~~~  397 (435)
T 1p22_A          344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EFQ  397 (435)
T ss_dssp             C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SSC
T ss_pred             e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC------------------------CCE
Confidence            8  78999999999999999987655         677788888888777663                        678


Q ss_pred             ceeeccccccceecccccc
Q 001362          701 EISVEAENKSEVEKPLFAR  719 (1092)
Q Consensus       701 l~s~~~d~~i~lw~~~~~~  719 (1092)
                      +++++.||.|++|++....
T Consensus       398 l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          398 IVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             EEECCSSSEEEEEC-----
T ss_pred             EEEEeCCCEEEEEECCCCC
Confidence            9999999999999987543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=284.95  Aligned_cols=290  Identities=17%  Similarity=0.150  Sum_probs=238.4

Q ss_pred             ecCCCCcEEEEEECCC---CCEEEEEeCCCEEEEEEccC-CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001362          392 VRDPGVSVNRVVWSPD---GSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1092)
Q Consensus       392 l~~h~~~V~~l~~spd---g~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  467 (1092)
                      +.+|.+.|.+++|+|+   |++|++|+.||.|++||+.+ +..+  ...+.+|...|.+++|+|+++  +|++++.|+.|
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v  110 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--PKAQQMHTGPVLDVCWSDDGS--KVFTASCDKTA  110 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--EEEEEECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--EEEeccccCCEEEEEECcCCC--EEEEEcCCCcE
Confidence            7789999999999999   69999999999999999997 4332  135778999999999999999  89999999999


Q ss_pred             EEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001362          468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       468 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      ++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.  +..++++
T Consensus       111 ~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~  186 (368)
T 3mmy_A          111 KMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVA  186 (368)
T ss_dssp             EEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEE
T ss_pred             EEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEE
Confidence            999999998776 5579999999999777788999999999999999999988887777665 45555555  4466666


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCE----EEEEeCCCcEEEEECCCC---ceEEEEeCCC
Q 001362          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ----ILAAGDDHVIKIWDMNKV---QLLTTIDAGG  620 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~----l~~~s~dg~i~iwd~~~~---~~~~~~~~~~  620 (1092)
                      +.    ++.+.+|+.............. ....+.++.+.++...    +++++.||.|++|++...   .....+..+.
T Consensus       187 ~~----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  261 (368)
T 3mmy_A          187 TA----ERGLIVYQLENQPSEFRRIESP-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR  261 (368)
T ss_dssp             EG----GGCEEEEECSSSCEEEEECCCS-CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred             eC----CCcEEEEEeccccchhhhcccc-ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence            65    5569999998765443322211 1345666666665554    999999999999999987   4556665543


Q ss_pred             CC----------CCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceee
Q 001362          621 GL----------PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV  690 (1092)
Q Consensus       621 ~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  690 (1092)
                      ..          ..|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...+.+++|+                 
T Consensus       262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-----------------  324 (368)
T 3mmy_A          262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN-----------------  324 (368)
T ss_dssp             EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC-----------------
T ss_pred             cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC-----------------
Confidence            21          158999999999999999999999999999999999999999999999996                 


Q ss_pred             cCCCCCCCccceeeccccccceeccc
Q 001362          691 NEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       691 ~~~~s~d~~~l~s~~~d~~i~lw~~~  716 (1092)
                           |+++++++++.|+..+.|++.
T Consensus       325 -----~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          325 -----HNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             -----TTSSCEEEEECCCSTTCGGGC
T ss_pred             -----CCCCeEEEEeccccccccccc
Confidence                 788999999999877777644

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=2.8e-29  Score=280.69  Aligned_cols=259  Identities=13%  Similarity=0.206  Sum_probs=218.2

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc-cceEEEcccccceeEEEEec--CCCcEEEEEEeCCCcE
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTI  467 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i  467 (1092)
                      ++.+|.+.|.+++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+|  |++  +|++++.|+.|
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v   83 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV   83 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence            47899999999999999999999999999999999976432 33446779999999999999  588  89999999999


Q ss_pred             EEEECCCC---------ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec------------
Q 001362          468 KVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------------  526 (1092)
Q Consensus       468 ~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------  526 (1092)
                      ++||+.++         +.+..+.+|...|.+++|++..++.++++++.||.|++||+++.+....+.            
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            99999987         567888899999999999775337899999999999999998876543222            


Q ss_pred             -CCCCceEEEEEccC---CCEEEEEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCC----CEEEEE
Q 001362          527 -APGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAK----DQILAA  596 (1092)
Q Consensus       527 -~~~~~i~~~~~s~d---g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~----~~l~~~  596 (1092)
                       .+...+.+++|+|+   +..+++++.    ++.+.+|+...+..  +..+.+|.   ..|.+++|+|++    ++++++
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~p~~~~~~~~l~s~  236 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHK---SLIRSISWAPSIGRWYQLIATG  236 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCC---SCEEEEEECCCSSCSSEEEEEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCC---cceeEEEECCCCCCcceEEEEE
Confidence             45668999999997   889999876    56688888777765  55666666   899999999998    799999


Q ss_pred             eCCCcEEEEECCCC----------------------------------------------ceEEEEeCCCCCCCCceEEE
Q 001362          597 GDDHVIKIWDMNKV----------------------------------------------QLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       597 s~dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~v~~  630 (1092)
                      +.||.|++||+.++                                              +.+..+..|  ...|.+++|
T Consensus       237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~  314 (351)
T 3f3f_A          237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH--NGEVWSVSW  314 (351)
T ss_dssp             ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT--SSCEEEEEE
T ss_pred             cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc--cccEEEEEE
Confidence            99999999999875                                              444555544  456999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCceeeec
Q 001362          631 NKNGTLLAVIANENRIKILETPESNSVDAA  660 (1092)
Q Consensus       631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  660 (1092)
                      +|++++|++++.||.|++|++.++..+..+
T Consensus       315 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          315 NLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             CSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             cCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            999999999999999999999987655543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=2.6e-29  Score=280.24  Aligned_cols=285  Identities=10%  Similarity=-0.001  Sum_probs=240.0

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      ..+|.+.|.+++|+|++++|++++.|+.|++|++.++........+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD   85 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence            4579999999999999999999999999999999987632233356689999999999999872 388899999999999


Q ss_pred             C-CCCceeEEEec--CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC---------CCceEEecCCCCceEEEEEcc
Q 001362          472 A-VTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------LGARVDYDAPGLGCTRMAYSA  539 (1092)
Q Consensus       472 ~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~i~~~~~s~  539 (1092)
                      + .+++. ..+.+  |...|.+++|++   +.++++++.||.|++||+++         .+....+. +...+.+++|+|
T Consensus        86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  160 (342)
T 1yfq_A           86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS  160 (342)
T ss_dssp             SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred             eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence            9 77754 77888  999999999976   57999999999999999987         55555555 777899999999


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCC-CeE--EEEEeeccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----
Q 001362          540 NGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV-----  610 (1092)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~s~dg~i~iwd~~~~-----  610 (1092)
                      ++  +++++.    ++.|++||+.+ +..  ......+.   ..+.+++|+| +++++++++.||.|++|++...     
T Consensus       161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  231 (342)
T 1yfq_A          161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             Cc--EEEEeC----CCeEEEEECCccccccceeeecCCC---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence            88  777765    66799999988 543  22333334   7899999999 9999999999999999999887     


Q ss_pred             -ceEEEEeCCCC-------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccc-cCceeeeeecCCCccccc
Q 001362          611 -QLLTTIDAGGG-------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGA  681 (1092)
Q Consensus       611 -~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~  681 (1092)
                       +....+..+..       ...|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|.+++  |       
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-------  302 (342)
T 1yfq_A          232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-------  302 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-------
T ss_pred             cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-------
Confidence             77777776643       337899999999999999999999999999999999999988 88887776  2       


Q ss_pred             cccCCceeecCCCCCCCccceeeccccc-cceecc
Q 001362          682 GIANGSVSVNEDPKEDVKPEISVEAENK-SEVEKP  715 (1092)
Q Consensus       682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~-i~lw~~  715 (1092)
                                     +++++++++.|+. .+.+..
T Consensus       303 ---------------~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          303 ---------------SDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             ---------------CSSEEEEEEECTHHHHCSSS
T ss_pred             ---------------CCCeEEEEecCCcccccccc
Confidence                           5788999999998 777664

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-28  Score=283.31  Aligned_cols=305  Identities=11%  Similarity=-0.003  Sum_probs=234.1

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCC---eeEEeeeee---eeccc---------------------------
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ---KLFIRNFKV---WDIGA---------------------------  382 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~---~~~~~~~~~---~d~~~---------------------------  382 (1092)
                      ++.+++|+|||+ +|+++ .++.|++||+.+|+   .+.......   +....                           
T Consensus         6 p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            6 PLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             cEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            899999999999 56655 46899999999998   443321100   00000                           


Q ss_pred             -----ccceeeEeeecCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEEcc--CCCcccceEEEcccccceeEEEEecCCC
Q 001362          383 -----CSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAFSAPCK  454 (1092)
Q Consensus       383 -----~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~~  454 (1092)
                           ...........+|...|.+++|+|+|++| ++++.|+.|++||+.  +++.+.... ...|...|.+++|+|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEECTTSS
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEEcCCCC
Confidence                 00000111234677789999999999996 889999999999999  776665321 125678999999999999


Q ss_pred             cEEEEEEeCCCcEEEEECCCCceeE----EEecCCcCeEEEeeccc-CCccEEEEEecCCeEEEEEcCCCCceEE-ecCC
Q 001362          455 QISVITCGDDKTIKVWDAVTGSRTY----SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGARVD-YDAP  528 (1092)
Q Consensus       455 ~l~l~s~~~d~~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~  528 (1092)
                        +|++|+.|+.|++|++.+++...    .+.+|...|.+++|++. ..+.+|++++.|+.|++||+.+...... +..|
T Consensus       163 --~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h  240 (450)
T 2vdu_B          163 --TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH  240 (450)
T ss_dssp             --EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred             --EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence              89999999999999998887554    77899999999999774 2268999999999999999998887776 5678


Q ss_pred             CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc----------------------ccCCceEEEEE
Q 001362          529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----------------------LQHNSVSVVHF  586 (1092)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------------------~~~~~v~~~~~  586 (1092)
                      ...|.+++|+ ++++|++++.    ++.|++||+.+++.+..+..+.                      .....|..++|
T Consensus       241 ~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  315 (450)
T 2vdu_B          241 KHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK  315 (450)
T ss_dssp             SSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred             CCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence            8999999999 9999999985    6679999999999988886432                      12356899999


Q ss_pred             cCCCCEEEEEe-CCCcEEEEEC--CCC---ceEEEEeCCCCCCCCceEEEccCCCEEEEEeC------CCeEEEEECCC
Q 001362          587 DTAKDQILAAG-DDHVIKIWDM--NKV---QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKILETPE  653 (1092)
Q Consensus       587 ~p~~~~l~~~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw~~~~  653 (1092)
                      +|+++++++++ .++.|++|++  .++   ..+..+..+   ..+.+++|+|++.++++++.      +..|.+|.+..
T Consensus       316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          316 SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            99999999998 8999999999  555   566667655   45899999996544443332      45578887653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.6e-27  Score=271.13  Aligned_cols=350  Identities=12%  Similarity=0.082  Sum_probs=260.1

Q ss_pred             ceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEEc
Q 001362          347 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAY  425 (1092)
Q Consensus       347 ~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~  425 (1092)
                      ++++++++.|+.|++||+.+++.+..                   +..| ..+.+++|+|+|++| ++++.|+.|++||+
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~   61 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT   61 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence            35889999999999999999987754                   3344 458999999999987 56678999999999


Q ss_pred             cCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEE-EE
Q 001362          426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FS  504 (1092)
Q Consensus       426 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s  504 (1092)
                      .+++.+.   .+..+. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..+ ..+.+++|++  +++.+ ++
T Consensus        62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~  133 (391)
T 1l0q_A           62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVT  133 (391)
T ss_dssp             TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEE
T ss_pred             CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEE
Confidence            9987554   444444 8999999999994 3456667899999999999998888754 4678888855  56666 78


Q ss_pred             EecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEE
Q 001362          505 ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV  584 (1092)
Q Consensus       505 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  584 (1092)
                      ++.++.|++||+.+++....+..+ ..+..++|+|++++++.++.   .++.|++||+.+++.+..+..+    ..+.++
T Consensus       134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~----~~~~~~  205 (391)
T 1l0q_A          134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE----AAPSGI  205 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SEEEEE
T ss_pred             eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC----CCccce
Confidence            888999999999988777766654 45689999999998865442   2567999999999888777642    578999


Q ss_pred             EEcCCCCEEEEEe---CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCceeeec
Q 001362          585 HFDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAA  660 (1092)
Q Consensus       585 ~~~p~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~  660 (1092)
                      +|+|+++++++++   .++.|++||+.+++.+..+..+.   .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+
T Consensus       206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence            9999999999987   78999999999999988887653   36889999999987 56678999999999999888777


Q ss_pred             ccccCcee---eeeecCCCccccccccCCceeecCCC----CCCC--ccceeeccccccceeccccccCccccccccCCc
Q 001362          661 GVLSDNLR---KLSVNPISTVTGAGIANGSVSVNEDP----KEDV--KPEISVEAENKSEVEKPLFARPSECQSLLLPSK  731 (1092)
Q Consensus       661 ~~~~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~----s~d~--~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~  731 (1092)
                      ..+..+..   .+...|.+....      ...|....    .+..  ..+...+.+...++|++..+....         
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~------~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~---------  347 (391)
T 1l0q_A          283 AVGKNPYASGQFIGSIPVQPVYP------SADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK---------  347 (391)
T ss_dssp             ECSSSEECCSSCEEECSSCCCCC------BCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC---------
T ss_pred             ECCcCCCccceeeeccccccccc------ccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC---------
Confidence            66654432   123333222110      11111110    0111  335556667888999976433211         


Q ss_pred             cccccEEEEEEecCCcEEEEee
Q 001362          732 VKANKISRLTYNNGGQAIFALA  753 (1092)
Q Consensus       732 ~~~~~i~~l~~s~~g~~l~~~~  753 (1092)
                       +..  ....|+++|.+.+...
T Consensus       348 -~~~--~~~~~~~~g~y~~~~~  366 (391)
T 1l0q_A          348 -KQN--PTHTYSETGIYTVRLT  366 (391)
T ss_dssp             -SSS--CEECCSSCEEEEEEEE
T ss_pred             -cCC--CeEEeCCCceEEEEEE
Confidence             111  2357888888766543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1.2e-28  Score=275.06  Aligned_cols=282  Identities=13%  Similarity=0.120  Sum_probs=215.9

Q ss_pred             eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001362          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      .+.++.+|.+.|++++|||||+ +||+|+.++ ++|||+.+++.....                     +...+..++++
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~   67 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRML   67 (355)
T ss_dssp             --------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEEC
T ss_pred             CccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEc
Confidence            3456789999999999999998 688888765 789999887655421                     22257889999


Q ss_pred             CCCCEEE-EEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEec
Q 001362          406 PDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG  483 (1092)
Q Consensus       406 pdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~  483 (1092)
                      +++++++ +++.|++|++||+.+++.+.   .+. |...|.+++|+++.    ++.+ .|+.|++||+.++ +.+..+..
T Consensus        68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~  138 (355)
T 3vu4_A           68 HRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR  138 (355)
T ss_dssp             TTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred             CCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc
Confidence            9998885 56778999999999987665   443 66789999999864    3333 3789999999998 77776655


Q ss_pred             CCcCeEEEeecccCCccEEEE--EecCCeEEEEEcCCCC----------------ceEEecCCCCceEEEEEccCCCEEE
Q 001362          484 HGAPVYSLCPHAKENIHFIFS--ISVDGKIKAWLYDSLG----------------ARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s--~~~dg~i~vwd~~~~~----------------~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                         +...+++++    .+++.  |+.||.|++||+.+..                ....+..|...|.+++|+|+|++|+
T Consensus       139 ---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~  211 (355)
T 3vu4_A          139 ---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA  211 (355)
T ss_dssp             ---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE
Confidence               333444543    35555  6899999999998765                2567889999999999999999999


Q ss_pred             EEecCCCCcee-EEEEeCCCCeEEEEEe-e-ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--E-----
Q 001362          546 SCGTSKEGESF-LVEWNESEGAIKRTYQ-G-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T-----  615 (1092)
Q Consensus       546 ~~~~~~~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~--~-----  615 (1092)
                      +++.    ++. |++||..+++.+..+. + |.   ..|.+++|+|++++|++++.|++|++||+..+....  .     
T Consensus       212 s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~  284 (355)
T 3vu4_A          212 TCSQ----DGTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI  284 (355)
T ss_dssp             EEET----TCSEEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred             EEeC----CCCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence            9986    776 9999999999999998 5 66   899999999999999999999999999997653211  1     


Q ss_pred             -------------EeCC-CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001362          616 -------------IDAG-GGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       616 -------------~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                                   .... ........++|+++++++++++.||.+++|++..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence                         0011 1112246799999999999999999999998764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=9.9e-27  Score=264.65  Aligned_cols=328  Identities=11%  Similarity=0.117  Sum_probs=254.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCceEEE
Q 001362          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM  535 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~  535 (1092)
                      ++++++.|+.|++||+.+++.+..+..|.. +.+++|++  ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~   79 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV   79 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence            788999999999999999999999987754 78899855  66665 677799999999999888777776555 89999


Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEE
Q 001362          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLT  614 (1092)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~s~dg~i~iwd~~~~~~~~  614 (1092)
                      +|+|+++++++++.   .++.|++||+.+++.+..+..+    ..+.+++|+|+++.+ ++++.++.|++||+.+++.+.
T Consensus        80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  152 (391)
T 1l0q_A           80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN  152 (391)
T ss_dssp             EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCC----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            99999999877653   2567999999999998887754    368999999999988 677789999999999999988


Q ss_pred             EEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCC
Q 001362          615 TIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED  693 (1092)
Q Consensus       615 ~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1092)
                      .+..+.   .+..++|+|+++++ ++++.++.|++||+.+++....+.                                
T Consensus       153 ~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------------------------------  197 (391)
T 1l0q_A          153 TVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--------------------------------  197 (391)
T ss_dssp             EEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred             EEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------------------------------
Confidence            887653   36899999999887 566778999999987542221100                                


Q ss_pred             CCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcc
Q 001362          694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE  773 (1092)
Q Consensus       694 ~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~  773 (1092)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (391)
T 1l0q_A          198 --------------------------------------------------------------------------------  197 (391)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCCceeeEEecCCCCCeEEE
Q 001362          774 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSL  849 (1092)
Q Consensus       774 ~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s----dg~i~iwd~~~~~~~~~~~~~~~~i~~l  849 (1092)
                                                 +...+.+++|+|+++++++++    ++.|++||+.+++.+..+..+. .+.++
T Consensus       198 ---------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~  249 (391)
T 1l0q_A          198 ---------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGI  249 (391)
T ss_dssp             ---------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEE
T ss_pred             ---------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEE
Confidence                                       122355677778877777664    5789999999998888887654 57899


Q ss_pred             EEcCCCCCEE-EEEeCCCcEEEEEcCCceeeEeeccccCCeE---EEEEcC------------CC----------CEEEE
Q 001362          850 AFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVT---GLVFSD------------AL----------NILVS  903 (1092)
Q Consensus       850 ~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~---~l~~sp------------dg----------~~l~s  903 (1092)
                      +|+| ++++| ++++.|+.|++||+.+++.+..+..|..+..   .+.+.|            +.          ..+..
T Consensus       250 ~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~  328 (391)
T 1l0q_A          250 AVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTD  328 (391)
T ss_dssp             EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEE
T ss_pred             EEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEe
Confidence            9999 77766 6778899999999999999988877765432   123332            21          34566


Q ss_pred             EeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001362          904 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       904 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~  953 (1092)
                      .+.|..+++|++..+....      .        .-....|+++|.+.+.
T Consensus       329 ~~~~~~~~~W~~~~g~~~~------~--------~~~~~~~~~~g~y~~~  364 (391)
T 1l0q_A          329 LSKDATEWKWDFGDGSSSK------K--------QNPTHTYSETGIYTVR  364 (391)
T ss_dssp             CCBSCSEEEEECSSSCEEC------S--------SSCEECCSSCEEEEEE
T ss_pred             CCCCceEEEEECCCCcccC------c--------CCCeEEeCCCceEEEE
Confidence            6778899999998765211      1        1224679999998875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=2.3e-28  Score=278.90  Aligned_cols=285  Identities=13%  Similarity=0.143  Sum_probs=232.8

Q ss_pred             CcEEEEEECCCCCEEE-EEeCCCEEEEEEccCC-CcccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECC
Q 001362          397 VSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAV  473 (1092)
Q Consensus       397 ~~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~  473 (1092)
                      .....++++|+...++ +++.||.|+||++... +.......+.+|.+.|.+++|+| +++  +|++|+.||+|++||+.
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence            3455689999876554 5788999999999654 22233335779999999999999 787  89999999999999999


Q ss_pred             CC-------ceeEEEecCCcCeEEEeecccCCc-cEEEEEecCCeEEEEEcCCCCceEEe--cCCCCceEEEEEccCCCE
Q 001362          474 TG-------SRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRR  543 (1092)
Q Consensus       474 ~~-------~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~dg~~  543 (1092)
                      ++       +.+..+.+|...|.+++|++  ++ .+|++++.||.|++||+.+.+....+  ..|...|.+++|+|++++
T Consensus       113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  190 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL  190 (402)
T ss_dssp             TTCCSSCBCSCSEEEECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred             CCCCccccCCceEEecCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence            88       67889999999999999966  44 69999999999999999999888888  788999999999999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEE-eeccccCCceEEEEEcCCCCEEEEE---eCCCcEEEEECCCCce-EEEEeC
Q 001362          544 LFSCGTSKEGESFLVEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQL-LTTIDA  618 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~l~~~---s~dg~i~iwd~~~~~~-~~~~~~  618 (1092)
                      |++++.    ++.|++||+.+++.+..+ .+|.  ...+..+.|+|++.++++|   +.|+.|++||+.+++. +.....
T Consensus       191 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~  264 (402)
T 2aq5_A          191 ICTSCR----DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL  264 (402)
T ss_dssp             EEEEET----TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC
T ss_pred             EEEEec----CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec
Confidence            999986    667999999999999888 6666  2348999999999999998   7999999999998765 333332


Q ss_pred             CCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCce-eeeccc--ccCceeeeeecCCCccccccccCCceeecCCC
Q 001362          619 GGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNS-VDAAGV--LSDNLRKLSVNPISTVTGAGIANGSVSVNEDP  694 (1092)
Q Consensus       619 ~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  694 (1092)
                      . +...+.+++|+|++++++++ +.||.|++|++.+++. +..+..  +...+.+++|+                     
T Consensus       265 ~-~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s---------------------  322 (402)
T 2aq5_A          265 D-TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM---------------------  322 (402)
T ss_dssp             C-CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC---------------------
T ss_pred             c-CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe---------------------
Confidence            2 23468999999999999755 4799999999998874 444444  45788888886                     


Q ss_pred             CCCCccceeeccccccceeccc
Q 001362          695 KEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       695 s~d~~~l~s~~~d~~i~lw~~~  716 (1092)
                       |++..+++  .++.+++|++.
T Consensus       323 -p~~~~~~s--~~~~~~~~~l~  341 (402)
T 2aq5_A          323 -PKRGLEVN--KCEIARFYKLH  341 (402)
T ss_dssp             -CGGGSCGG--GTEEEEEEEEE
T ss_pred             -ccccccee--cceeEEEEEcC
Confidence             56666665  45689999976

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.2e-27  Score=249.26  Aligned_cols=270  Identities=10%  Similarity=0.046  Sum_probs=200.8

Q ss_pred             EEEEEeCCCeEEEEECCCC---ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001362          636 LLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1092)
Q Consensus       636 ~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l  712 (1092)
                      .++++++ ..|++|+..++   +.+.+...+..+|..+.+.|+...                      ++.... |    
T Consensus        56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------------~~~~~~-~----  107 (356)
T 2w18_A           56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN----------------------LVCVAL-G----  107 (356)
T ss_dssp             EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS----------------------CEEEEE-C----
T ss_pred             EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc----------------------eeeeee-c----
Confidence            4555555 69999999998   788899999999999988764332                      211111 0    


Q ss_pred             eccccccCccccccccCCccccccEEEEEEecC----CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCC
Q 001362          713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNG----GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  788 (1092)
Q Consensus       713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~----g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g  788 (1092)
                                        .-+...|.+++++|+    ++.++.++.+  +.+|++                         
T Consensus       108 ------------------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l-------------------------  142 (356)
T 2w18_A          108 ------------------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL-------------------------  142 (356)
T ss_dssp             ------------------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEE-------------------------
T ss_pred             ------------------cccccceEEEEECCCccccccEEEeCCCe--EEEEec-------------------------
Confidence                              115678999999999    9988887744  555542                         


Q ss_pred             CceeeecCCCCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEEc-CCceeeEEecCCCCCeEEEEEcC--CCCCEEEEE
Q 001362          789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIV-MTFKTILTIMPPSPTATSLAFNP--HDNNVIAIG  862 (1092)
Q Consensus       789 ~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~s~--~d~~~lasg  862 (1092)
                                             ++++++.++.   |+.|++|++ .+++.+..+..|...++.++|++  .++.+||+|
T Consensus       143 -----------------------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg  199 (356)
T 2w18_A          143 -----------------------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT  199 (356)
T ss_dssp             -----------------------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred             -----------------------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence                                   3556666654   788999998 45788888888888888888887  467899999


Q ss_pred             eCCCcEEEEEcCCceeeEeecccc---CCeEEEEEcCCCCEE------------EEEeCCCcEEEEEcCCCceeeeeeee
Q 001362          863 MDDSTILIYNARSSEVISKLEGHS---KRVTGLVFSDALNIL------------VSSGGDAQIFVWDVDGWGIQTCRSLQ  927 (1092)
Q Consensus       863 ~~dg~v~iwd~~~~~~~~~l~~h~---~~V~~l~~spdg~~l------------~s~s~Dg~i~iwd~~~~~~~~~~~~~  927 (1092)
                      +.|++|+|||+.+|+++.++.+|.   ..+.+++|+|||+++            ++|+.|++|++||..+++......+.
T Consensus       200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~  279 (356)
T 2w18_A          200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC  279 (356)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC
T ss_pred             cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee
Confidence            999999999999999999998754   367788999999886            66889999999999987755433333


Q ss_pred             cCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEE-EEEEecCCCEEEEEECCCcEEEE
Q 001362          928 TPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPIS-QATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus       928 ~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~-~l~fs~dg~~l~t~~~Dg~i~vw 1005 (1092)
                      .+.++..   .+.  ..+.++.++|+ +.|++|+|||+.+++++.. +.+|...+. .++|||||++|++|+.|++|+||
T Consensus       280 ~p~Gh~~---~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~t-L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW  353 (356)
T 2w18_A          280 LPPGQAG---RFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTAL-LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY  353 (356)
T ss_dssp             CCTTCCC---CEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEE-ECCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred             ccCCCcc---eeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEE-ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence            3445543   233  33444888888 4799999999999999988 557766554 68999999999999999999999


Q ss_pred             Ec
Q 001362         1006 EA 1007 (1092)
Q Consensus      1006 d~ 1007 (1092)
                      |+
T Consensus       354 d~  355 (356)
T 2w18_A          354 HY  355 (356)
T ss_dssp             EE
T ss_pred             cC
Confidence            96

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.2e-26  Score=243.75  Aligned_cols=293  Identities=14%  Similarity=0.138  Sum_probs=206.0

Q ss_pred             eeEEEEe-cCCCcEEEEEEeCCCcEEEEECCCC---ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC
Q 001362          444 VNDLAFS-APCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL  519 (1092)
Q Consensus       444 v~~~~~s-~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  519 (1092)
                      +.++-|- +..+.+.+++++ ...|++|+..++   ++++++.+|..+|..+.+.|+.-+-..++-+             
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------------  107 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG-------------  107 (356)
T ss_dssp             EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred             EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence            5556553 445555677777 568999999999   8999999999999999997754332222221             


Q ss_pred             CceEEecCCCCceEEEEEccC----CCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE
Q 001362          520 GARVDYDAPGLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA  595 (1092)
Q Consensus       520 ~~~~~~~~~~~~i~~~~~s~d----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  595 (1092)
                            ..+...|.+++++||    ++.+++++.      .+.+|++.+++                         .+.+
T Consensus       108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~~g~-------------------------lv~s  150 (356)
T 2w18_A          108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLTKRR-------------------------LVSS  150 (356)
T ss_dssp             ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEETTTE-------------------------EEEE
T ss_pred             ------cccccceEEEEECCCccccccEEEeCCC------eEEEEecCCCc-------------------------EEEe
Confidence                  123447889999999    889988753      26666543333                         3333


Q ss_pred             Ee--CCCcEEEEEC-CCCceEEEEeCCCCCCCCceEEEcc---CCCEEEEEeCCCeEEEEECCCCceeeecccccCceee
Q 001362          596 AG--DDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRK  669 (1092)
Q Consensus       596 ~s--~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~  669 (1092)
                      ++  .|+.|++|++ .+|+.+..+..+.  ..+..++|++   ++.+|++++.|++|+|||+.+++.+..+.++..    
T Consensus       151 s~~g~d~~V~~~~~s~dG~~~~s~~~~~--~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~----  224 (356)
T 2w18_A          151 SGTLSDQQVEVMTFAEDGGGKENQFLMP--PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS----  224 (356)
T ss_dssp             ESSSTTCEEEEEEECTTSCEEEEEEECC--CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----
T ss_pred             cccCCCCcEEEEEECCCCceeeeeccCC--CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc----
Confidence            22  4677777777 4466666666554  3578899999   789999999999999999999988877654322    


Q ss_pred             eeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEE
Q 001362          670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI  749 (1092)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  749 (1092)
                                                                                     +...+.+++|+|+|+.+
T Consensus       225 ---------------------------------------------------------------~v~~v~~vafSpdG~~l  241 (356)
T 2w18_A          225 ---------------------------------------------------------------YQASVCHKAYSEMGLLF  241 (356)
T ss_dssp             -----------------------------------------------------------------CCCEEEEEEETTEEE
T ss_pred             ---------------------------------------------------------------ceeeeEEEEECCCCCEE
Confidence                                                                           12346678899999877


Q ss_pred             EEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEE
Q 001362          750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLY  828 (1092)
Q Consensus       750 ~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iw  828 (1092)
                      ++++.+..  +                                                      ..+++++ |++|++|
T Consensus       242 vs~s~~~~--~------------------------------------------------------w~laSGs~D~tIklW  265 (356)
T 2w18_A          242 IVLSHPCA--K------------------------------------------------------ESESLRSPVFQLIVI  265 (356)
T ss_dssp             EEEC--------------------------------------------------------------------CCEEEEEE
T ss_pred             EEeccCCC--c------------------------------------------------------ceeeccCCCcEEEEE
Confidence            77664311  0                                                      1355666 6889999


Q ss_pred             EcCCceeeEEe-----cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeE-EEEEcCCCCEEE
Q 001362          829 IVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILV  902 (1092)
Q Consensus       829 d~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~  902 (1092)
                      |..+++.+..+     .+|...+.+..+   ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|||||++|+
T Consensus       266 d~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La  342 (356)
T 2w18_A          266 NPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL  342 (356)
T ss_dssp             ETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE
T ss_pred             ECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE
Confidence            99999887765     356555544444   467999999999999999999999999999988665 589999999999


Q ss_pred             EEeCCCcEEEEEc
Q 001362          903 SSGGDAQIFVWDV  915 (1092)
Q Consensus       903 s~s~Dg~i~iwd~  915 (1092)
                      +|+.|++|+|||+
T Consensus       343 SGS~D~TIklWd~  355 (356)
T 2w18_A          343 AGQKDGNIFVYHY  355 (356)
T ss_dssp             EECTTSCEEEEEE
T ss_pred             EEECCCcEEEecC
Confidence            9999999999996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=2.4e-26  Score=265.47  Aligned_cols=355  Identities=14%  Similarity=0.092  Sum_probs=261.1

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCC-CEEEEEEccCCCcccceEEEcccccceeEEE---EecCCCcEEEE-----------
Q 001362          395 PGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLA---FSAPCKQISVI-----------  459 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~---~s~d~~~l~l~-----------  459 (1092)
                      ....|..+.++|....++..... ...+++..             .....+..++   |+|++..++++           
T Consensus        26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~   92 (433)
T 3bws_A           26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEM-------------DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYR   92 (433)
T ss_dssp             -CEEEEEEEEECCTTCEEEETTEECCEEEEEE-------------ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEE
T ss_pred             CCcEEEEEecccccCceEEcCceecceeeeec-------------ccCCccEEEEEeeccCCCcEEEEEEccccCcceee
Confidence            44567778888865444443211 11222221             1223455666   77776642222           


Q ss_pred             -EEeCCC--cEEEEECCCC--ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-----EecCCC
Q 001362          460 -TCGDDK--TIKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-----DYDAPG  529 (1092)
Q Consensus       460 -s~~~d~--~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~  529 (1092)
                       +++.++  .|..||..++  +.+..+..+. .+.+++|++  ++.++++++.++.|++||+.+++...     .+..+.
T Consensus        93 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~  169 (433)
T 3bws_A           93 IRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL  169 (433)
T ss_dssp             ESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred             ecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence             223344  4444555445  5566666554 455888866  66788888899999999999887766     344677


Q ss_pred             CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 001362          530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN  608 (1092)
Q Consensus       530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~  608 (1092)
                      ..+.+++|+++++.+++++.    ++.|++||..+++.+..+..+.   ..+.+++|+|+++.+++++ .++.|++||+.
T Consensus       170 ~~v~~~~~~~~~~~~~s~~~----d~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  242 (433)
T 3bws_A          170 GFVETISIPEHNELWVSQMQ----ANAVHVFDLKTLAYKATVDLTG---KWSKILLYDPIRDLVYCSNWISEDISVIDRK  242 (433)
T ss_dssp             CEEEEEEEGGGTEEEEEEGG----GTEEEEEETTTCCEEEEEECSS---SSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CceeEEEEcCCCEEEEEECC----CCEEEEEECCCceEEEEEcCCC---CCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence            78999999999999998875    6679999999999998888766   7899999999999886554 89999999999


Q ss_pred             CCceEEEEeCCCCCCCCceEEEccCCCEEEEEe--------CCCeEEEEECCCCceeeecccccCceeeeeecCCCcccc
Q 001362          609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--------NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG  680 (1092)
Q Consensus       609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  680 (1092)
                      +++.+..+..+.   .+.+++|+|+++++++++        .|+.|++||+.+++.....                    
T Consensus       243 ~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--------------------  299 (433)
T 3bws_A          243 TKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI--------------------  299 (433)
T ss_dssp             TTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--------------------
T ss_pred             CCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--------------------
Confidence            999888776543   378999999999999887        3667777766543211100                    


Q ss_pred             ccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEE
Q 001362          681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM  760 (1092)
Q Consensus       681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~l  760 (1092)
                                                                                                      
T Consensus       300 --------------------------------------------------------------------------------  299 (433)
T 3bws_A          300 --------------------------------------------------------------------------------  299 (433)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-e-CCeEEEEEcCCceeeEE
Q 001362          761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILT  838 (1092)
Q Consensus       761 w~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~-s-dg~i~iwd~~~~~~~~~  838 (1092)
                                                             .+...+.+++|+|+++.++++ + ++.|++||+.+++.+..
T Consensus       300 ---------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~  340 (433)
T 3bws_A          300 ---------------------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS  340 (433)
T ss_dssp             ---------------------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ---------------------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence                                                   012245567888888755444 3 68899999998888877


Q ss_pred             ecCCCCCeEEEEEcCCCCCEEEEEeC---------------CCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEE
Q 001362          839 IMPPSPTATSLAFNPHDNNVIAIGMD---------------DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS  903 (1092)
Q Consensus       839 ~~~~~~~i~~l~~s~~d~~~lasg~~---------------dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s  903 (1092)
                      +. +...+.+++|+| ++++|++++.               ||.|++||+.+++.+..+.. ...+.+++|+|||++|++
T Consensus       341 ~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~  417 (433)
T 3bws_A          341 IP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVI  417 (433)
T ss_dssp             EE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEE
T ss_pred             ec-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEE
Confidence            76 667899999999 8888888876               57999999999999888886 457999999999999998


Q ss_pred             EeC-CCcEEEEEcCC
Q 001362          904 SGG-DAQIFVWDVDG  917 (1092)
Q Consensus       904 ~s~-Dg~i~iwd~~~  917 (1092)
                      ++. |+.|++|+++.
T Consensus       418 ~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          418 SDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EETTTTEEEEEEETT
T ss_pred             EECCCCeEEEEEecC
Confidence            875 99999999874

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-28  Score=303.96  Aligned_cols=260  Identities=13%  Similarity=0.155  Sum_probs=212.2

Q ss_pred             eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001362          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      ..++.+|.+.|++++|+|+|+ ++++|+.||+|+|||+.++.....                 ..+.+|.+.|.+++|+|
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~   63 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAH   63 (753)
T ss_dssp             ------CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECC
T ss_pred             eeecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecC
Confidence            367899999999999999998 689999999999999985432211                 12778999999999999


Q ss_pred             C--CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEEEECCCC--ceeEE
Q 001362          407 D--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTG--SRTYS  480 (1092)
Q Consensus       407 d--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~--~~~~~  480 (1092)
                      +  +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+  ++  .+++|+.||.|++||+.++  .....
T Consensus        64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~  140 (753)
T 3jro_A           64 PKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPII  140 (753)
T ss_dssp             TTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeE
Confidence            8  99999999999999999998752 133367789999999999999  88  8999999999999999887  34566


Q ss_pred             EecCCcCeEEEeecccC-----------CccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccC---CC
Q 001362          481 FEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSAN---GR  542 (1092)
Q Consensus       481 ~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~d---g~  542 (1092)
                      +.+|...|.+++|++..           ++.++++|+.||.|++||++....    ...+..|...|.+++|+|+   ++
T Consensus       141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~  220 (753)
T 3jro_A          141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS  220 (753)
T ss_dssp             EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred             eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence            78899999999997742           578999999999999999988743    3467788999999999999   89


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001362          543 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~  611 (1092)
                      ++++++.    ++.|++||..++...  ........+...|.+++|+|+++++++++.||.|++|++.++.
T Consensus       221 ~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          221 YLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             EEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            9999986    566999999886421  1111112234789999999999999999999999999998643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-28  Score=303.31  Aligned_cols=255  Identities=17%  Similarity=0.300  Sum_probs=215.2

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEE
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK  468 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~  468 (1092)
                      ++.+|.+.|++++|+|+|++|++|+.||.|+|||+.++. ......+.+|.++|++++|+|+  ++  ++++|+.||.|+
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~   80 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL   80 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence            377899999999999999999999999999999998532 2333478899999999999998  77  899999999999


Q ss_pred             EEECCCCc--eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEcc-----
Q 001362          469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA-----  539 (1092)
Q Consensus       469 vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~-----  539 (1092)
                      +||+.+++  .+..+.+|...|.+++|++..++.++++|+.||.|++||+....  ....+..+...|.+++|+|     
T Consensus        81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence            99999987  77888899999999999776447899999999999999998873  3456677888999999999     


Q ss_pred             --------CCCEEEEEecCCCCceeEEEEeCCCC----eEEEEEeeccccCCceEEEEEcCC---CCEEEEEeCCCcEEE
Q 001362          540 --------NGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKI  604 (1092)
Q Consensus       540 --------dg~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~s~dg~i~i  604 (1092)
                              ++..+++++.    ++.|++||..++    .....+.+|.   ..|.+++|+|+   ++++++++.||.|++
T Consensus       161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i  233 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCII  233 (753)
T ss_dssp             ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred             ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence                    5899999986    566999999877    5556677776   89999999999   899999999999999


Q ss_pred             EECCCCceE---EEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001362          605 WDMNKVQLL---TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       605 wd~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      ||+.++...   .......+...|.+++|+|+|+++++++.||.|++|++..+.
T Consensus       234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            999886421   112222344578999999999999999999999999998653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=9.3e-28  Score=276.00  Aligned_cols=256  Identities=16%  Similarity=0.250  Sum_probs=214.5

Q ss_pred             eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCC----------CCeeEEeeeeeeecccccceeeEeeecCCC
Q 001362          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS----------GQKLFIRNFKVWDIGACSMLFKTALVRDPG  396 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~----------~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~  396 (1092)
                      ...+.+|.+.|++++|+|++..++|+|+.||.|+|||+.+          ...+.                   .+.+|.
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~-------------------~~~~h~  181 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDL-------------------RLRGHQ  181 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSE-------------------EEECCS
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcE-------------------EecCCC
Confidence            3556789999999999998545899999999999999986          22222                   267899


Q ss_pred             CcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcc----cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       397 ~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      ..|.+++|+|++. +|++|+.||.|++|++.++...    .....+.+|...|.+++|+|++.. ++++++.|+.|++||
T Consensus       182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d  260 (430)
T 2xyi_A          182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWD  260 (430)
T ss_dssp             SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEE
T ss_pred             CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEE
Confidence            9999999999998 9999999999999999885432    123457789999999999995444 799999999999999


Q ss_pred             CCCC---ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCC-EEEE
Q 001362          472 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGR-RLFS  546 (1092)
Q Consensus       472 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~-~l~~  546 (1092)
                      +.++   +.+..+..|...|++++|++.. ..++++|+.||.|++||++. ......+..|...|.+++|+|+++ .+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s  339 (430)
T 2xyi_A          261 TRNNNTSKPSHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS  339 (430)
T ss_dssp             TTCSCSSSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred             CCCCCCCcceeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence            9987   5778888999999999997642 24799999999999999998 456778888999999999999996 5777


Q ss_pred             EecCCCCceeEEEEeCCC--------------CeEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC
Q 001362          547 CGTSKEGESFLVEWNESE--------------GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV  610 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~--------------~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~s~dg~i~iwd~~~~  610 (1092)
                      ++.    ++.|++||+..              .+.+..+.+|.   ..|..++|+|+++ .+++++.||.|++|++...
T Consensus       340 ~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          340 SGT----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EET----TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EeC----CCcEEEEeCCCCccccCccccccCCcceEEEcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            765    56799999987              35556666666   8899999999999 8899999999999998754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.2e-26  Score=268.05  Aligned_cols=300  Identities=12%  Similarity=0.040  Sum_probs=229.7

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceE--EEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001362          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  474 (1092)
                      ..+.+++|+|++.++++++.++.|++||+.+++......  .+.+|.+.|.+++|+++++  ++++++.|+.|++||+++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence            456699999988888888888999999999987553211  2347888999999999998  899999999999999999


Q ss_pred             CceeEEEecCCcCeEEEeecccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC-
Q 001362          475 GSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-  552 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~-  552 (1092)
                      ++.+..+..|...+.+++|++  ++..+ ++++.|+.|++||+++++....+.. ...+.+++|+|+|+++++++.... 
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~  277 (433)
T 3bws_A          201 LAYKATVDLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN  277 (433)
T ss_dssp             CCEEEEEECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred             ceEEEEEcCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence            999999999999999999965  55666 5555899999999998777666655 346899999999999998874321 


Q ss_pred             ---CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001362          553 ---GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1092)
Q Consensus       553 ---~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1092)
                         .++.|++||+.+++.+..+. +.   ..+..++|+|+++.+ ++++.++.|++||+.+++.+..+...   ..+.++
T Consensus       278 ~~~~dg~i~~~d~~~~~~~~~~~-~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~  350 (433)
T 3bws_A          278 QESGGGRLGIYSMDKEKLIDTIG-PP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---DKPNTI  350 (433)
T ss_dssp             TCSCCEEEEEEETTTTEEEEEEE-EE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEE
T ss_pred             cccCCCeEEEEECCCCcEEeecc-CC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---CCCCeE
Confidence               36789999999998877653 33   478899999999866 45689999999999999988888643   347899


Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccc
Q 001362          629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  708 (1092)
Q Consensus       629 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  708 (1092)
                      +|+|+++++++++.+..                                                 ..+..++++++.||
T Consensus       351 ~~s~dg~~l~~~~~~~~-------------------------------------------------~~~~~~~~~g~~dg  381 (433)
T 3bws_A          351 ALSPDGKYLYVSCRGPN-------------------------------------------------HPTEGYLKKGLVLG  381 (433)
T ss_dssp             EECTTSSEEEEEECCCC-------------------------------------------------CTTTCTTSCCSSCC
T ss_pred             EEcCCCCEEEEEecCCC-------------------------------------------------ccccccccccccce
Confidence            99999999988876320                                                 01123344455555


Q ss_pred             ccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeec-CCeeEEEeec
Q 001362          709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWP  764 (1092)
Q Consensus       709 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~lw~~~  764 (1092)
                      .+++||....+.....       .....+.+++|+|+|+.+++++. ++.+++|++.
T Consensus       382 ~v~~~d~~~~~~~~~~-------~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          382 KVYVIDTTTDTVKEFW-------EAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEEEETTTTEEEEEE-------ECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             EEEEEECCCCcEEEEe-------cCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            5555554322211111       02345788999999998887775 8999999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=4e-27  Score=262.73  Aligned_cols=299  Identities=13%  Similarity=0.135  Sum_probs=215.4

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      ..+|...|.+++|||||++||+|+.++ ++||++.+++...   .  .+...+..+++.++++. ++++++.|++|++||
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd   87 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD   87 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence            467999999999999999999998776 7899998764332   1  22235888999998884 346788889999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      ..+++.+..+. |...|.++++++  +  .++.+ .|+.|++||+.+. +....+..   +...+++++  .++++++. 
T Consensus        88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg-  155 (355)
T 3vu4_A           88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE-  155 (355)
T ss_dssp             TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred             CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence            99999999887 677999999854  2  34443 5889999999887 44444433   444566777  66666522 


Q ss_pred             CCCceeEEEEeCCCCe----------------EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceE
Q 001362          551 KEGESFLVEWNESEGA----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLL  613 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~----------------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~-i~iwd~~~~~~~  613 (1092)
                       ..++.|++||+.++.                .+..+.+|.   ..|.+++|+|+++++++|+.|++ |++||+.+++.+
T Consensus       156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~  231 (355)
T 3vu4_A          156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV  231 (355)
T ss_dssp             -SCTTCEEEEECCC------------------CCEEECCCS---SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred             -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccC---CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence             236679999999875                266777877   89999999999999999999998 999999999999


Q ss_pred             EEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCcee--eeccc-----ccCceeeeeecCCCccccccccCC
Q 001362          614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV--DAAGV-----LSDNLRKLSVNPISTVTGAGIANG  686 (1092)
Q Consensus       614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~  686 (1092)
                      ..+....+...|.+++|+|++++|++++.|++|++|++......  ..+..     .....++++......  .......
T Consensus       232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  309 (355)
T 3vu4_A          232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV--DKHVRGC  309 (355)
T ss_dssp             EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCC--CTTCCCC
T ss_pred             EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEecc--CCCCCce
Confidence            99873223457999999999999999999999999999865321  11111     001111111000000  0001113


Q ss_pred             ceeecCCCCCCCccceeeccccccceecccccc
Q 001362          687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  719 (1092)
Q Consensus       687 ~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~  719 (1092)
                      .+++    ++|++.+++++.||.+++|++....
T Consensus       310 ~~a~----~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          310 KIAW----ISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             EEEE----SSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             EEEE----eCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            3455    6899999999999999999976443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.6e-27  Score=263.60  Aligned_cols=278  Identities=8%  Similarity=0.048  Sum_probs=218.1

Q ss_pred             EEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001362          448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA  527 (1092)
Q Consensus       448 ~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  527 (1092)
                      .+.+++.  ++++|+.||+|++||+.+++.+..+.  ...|.++.+++.     +++++.|++|++|+...         
T Consensus        43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~---------  104 (343)
T 3lrv_A           43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN---------  104 (343)
T ss_dssp             SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred             hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence            4456777  89999999999999999999988886  466777877653     99999999999998643         


Q ss_pred             CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe-eccccCCceEEEEEcC--CCCEEEEEeCCCcEEE
Q 001362          528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKI  604 (1092)
Q Consensus       528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~p--~~~~l~~~s~dg~i~i  604 (1092)
                                                  .+.+||..+++.+..+. +|.   ..|.+++|+|  +++++++++.||+|++
T Consensus       105 ----------------------------~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A          105 ----------------------------QITILDSKTNKVLREIEVDSA---NEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ----------------------------EEEEEETTTCCEEEEEECCCS---SCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             ----------------------------ceEEeecCCcceeEEeecCCC---CCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence                                        27788888888766665 444   7899999999  9999999999999999


Q ss_pred             EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCcee-eecccccCceeeeeecCCCccccccc
Q 001362          605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV-DAAGVLSDNLRKLSVNPISTVTGAGI  683 (1092)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~  683 (1092)
                      ||+++++.......+. ...+.+++|+|++.++++|+.||.|++||+.+++.. ..+.                      
T Consensus       154 wd~~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~----------------------  210 (343)
T 3lrv_A          154 QSYEDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP----------------------  210 (343)
T ss_dssp             EESSSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC----------------------
T ss_pred             EECCCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe----------------------
Confidence            9999999876664432 235899999999999999999999999998765221 1000                      


Q ss_pred             cCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEee
Q 001362          684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  763 (1092)
Q Consensus       684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~  763 (1092)
                                                                                                      
T Consensus       211 --------------------------------------------------------------------------------  210 (343)
T 3lrv_A          211 --------------------------------------------------------------------------------  210 (343)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecC--
Q 001362          764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP--  841 (1092)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~--  841 (1092)
                                                      .   +|...|.+++|+|+|.+|++++++.|++||+.+++.+..+..  
T Consensus       211 --------------------------------~---~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~  255 (343)
T 3lrv_A          211 --------------------------------V---DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYT  255 (343)
T ss_dssp             --------------------------------C---CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCB
T ss_pred             --------------------------------c---cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccc
Confidence                                            0   166778888888888888888877899999888776655443  


Q ss_pred             -CCCCe--EEEEEcCCCCCEEEEEeC-CCcEEEEEcCCceeeEeeccccCCeEEEEEcC---CCCEEEEEeCCCcEEEEE
Q 001362          842 -PSPTA--TSLAFNPHDNNVIAIGMD-DSTILIYNARSSEVISKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWD  914 (1092)
Q Consensus       842 -~~~~i--~~l~~s~~d~~~lasg~~-dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp---dg~~l~s~s~Dg~i~iwd  914 (1092)
                       |...+  .+++|+| ++++|++++. |+.|+||++.+.......    .++..++|++   +.+.+++++.|+.+.++-
T Consensus       256 ~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          256 IPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             C-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred             cccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEE
Confidence             33333  4699999 8999999998 999999999766543332    5678889998   889999999999999886


Q ss_pred             cCC
Q 001362          915 VDG  917 (1092)
Q Consensus       915 ~~~  917 (1092)
                      ...
T Consensus       331 ~~~  333 (343)
T 3lrv_A          331 KTN  333 (343)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=1.1e-26  Score=267.02  Aligned_cols=257  Identities=16%  Similarity=0.311  Sum_probs=214.6

Q ss_pred             eeEeeecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCC-------CcccceEEEcccccceeEEEEecCCCcEEE
Q 001362          387 FKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG-------SDARQQLEIDAHVGNVNDLAFSAPCKQISV  458 (1092)
Q Consensus       387 ~~~~~l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l  458 (1092)
                      +......+|.+.|++++|+|+ +.+||+++.+|.|++||+.+.       ........+.+|...|.+++|+|++.. +|
T Consensus       119 ~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l  197 (430)
T 2xyi_A          119 IEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YL  197 (430)
T ss_dssp             EEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EE
T ss_pred             eEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eE
Confidence            333446679999999999997 789999999999999999862       112334478899999999999999886 69


Q ss_pred             EEEeCCCcEEEEECCCCce-------eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC---CceEEecCC
Q 001362          459 ITCGDDKTIKVWDAVTGSR-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAP  528 (1092)
Q Consensus       459 ~s~~~d~~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~  528 (1092)
                      ++|+.||.|++||+.++..       ...+.+|...|.+++|++. ++.+|++++.||.|++||++..   .....+..+
T Consensus       198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  276 (430)
T 2xyi_A          198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH  276 (430)
T ss_dssp             EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred             EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence            9999999999999988432       4667789999999999764 4579999999999999999987   456677788


Q ss_pred             CCceEEEEEccCCC-EEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCcEEEE
Q 001362          529 GLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIW  605 (1092)
Q Consensus       529 ~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~s~dg~i~iw  605 (1092)
                      ...|.+++|+|++. .+++++.    ++.|++||+++ +..+..+.+|.   ..|.+++|+|+++ .+++++.|+.|++|
T Consensus       277 ~~~v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iw  349 (430)
T 2xyi_A          277 TAEVNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVW  349 (430)
T ss_dssp             SSCEEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEE
T ss_pred             CCCeEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEE
Confidence            89999999999998 4667765    66799999997 56778888877   8999999999985 68889999999999


Q ss_pred             ECCC--------------CceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCCC
Q 001362          606 DMNK--------------VQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES  654 (1092)
Q Consensus       606 d~~~--------------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~  654 (1092)
                      |+..              ...+.....+  ...|.+++|+|+++ ++++++.||.|++|++...
T Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          350 DLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             eCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            9987              2445555444  45699999999999 9999999999999998753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.6e-27  Score=270.45  Aligned_cols=265  Identities=15%  Similarity=0.096  Sum_probs=219.4

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEc--------------------------------------
Q 001362          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID--------------------------------------  438 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~--------------------------------------  438 (1092)
                      .++.+++|+|||++|+++ .++.|++||+.+|+.......+.                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            478899999999977666 57789999999987221111222                                      


Q ss_pred             ----------------ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC--CCceeEEEe--cCCcCeEEEeecccCC
Q 001362          439 ----------------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFE--GHGAPVYSLCPHAKEN  498 (1092)
Q Consensus       439 ----------------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~  498 (1092)
                                      +|.+.|.+++|+|+++. ++++++.|+.|++||+.  +++.+..+.  .|...|.+++|++  +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~  160 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESR-LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--D  160 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSE-EEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--T
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCE-EEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--C
Confidence                            34447999999999993 24899999999999999  888888886  5678999999955  6


Q ss_pred             ccEEEEEecCCeEEEEEcCCCCceE----EecCCCCceEEEEEccC---CCEEEEEecCCCCceeEEEEeCCCCeEEEE-
Q 001362          499 IHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAIKRT-  570 (1092)
Q Consensus       499 ~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~d---g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-  570 (1092)
                      +.+|++++.+|.|++|++.......    .+..|...|.+++|+|+   +++|++++.    ++.|++||+.+++.+.. 
T Consensus       161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~  236 (450)
T 2vdu_B          161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDKW  236 (450)
T ss_dssp             SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEEE
T ss_pred             CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeeee
Confidence            7899999999999999998776543    66678889999999999   999999986    55699999999988877 


Q ss_pred             EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----------------------CCCCCCce
Q 001362          571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------GGLPENPR  627 (1092)
Q Consensus       571 ~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~  627 (1092)
                      +.+|.   ..|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+                       .....+..
T Consensus       237 ~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (450)
T 2vdu_B          237 LFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK  312 (450)
T ss_dssp             CCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred             ecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence            44666   899999999 9999999999999999999999998887632                       11235789


Q ss_pred             EEEccCCCEEEEEe-CCCeEEEEEC--CCC---ceeeecccccCceeeeeecC
Q 001362          628 ICFNKNGTLLAVIA-NENRIKILET--PES---NSVDAAGVLSDNLRKLSVNP  674 (1092)
Q Consensus       628 v~~s~~~~~l~~~~-~dg~i~iw~~--~~~---~~~~~~~~~~~~v~~~~~~~  674 (1092)
                      ++|+|+++++++++ .++.|++|++  ..+   ..+..+..+ ..+.+++++|
T Consensus       313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~  364 (450)
T 2vdu_B          313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN  364 (450)
T ss_dssp             EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC
Confidence            99999999999999 8999999999  555   556666666 7888999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.1e-28  Score=267.64  Aligned_cols=271  Identities=10%  Similarity=0.056  Sum_probs=213.1

Q ss_pred             EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001362          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  419 (1092)
Q Consensus       340 v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~  419 (1092)
                      ..+.+|++ ++++|+.||+|++||+.+++.+...                   .  ...|.+++|+|+   +++++.|++
T Consensus        42 ~~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~-------------------~--~~~v~~~~~~~~---~~s~s~D~~   96 (343)
T 3lrv_A           42 KSMYYDKW-VCMCRCEDGALHFTQLKDSKTITTI-------------------T--TPNPRTGGEHPA---IISRGPCNR   96 (343)
T ss_dssp             SSSSEEEE-EEEEEEETTEEEEEEESSSSCEEEE-------------------E--EECCCTTCCCCS---EEEECSTTE
T ss_pred             hhhcCCCC-EEEEECCCCcEEEEECCCCcEEEEE-------------------e--cCCceeeeeCCc---eEEecCCCe
Confidence            34556776 7999999999999999999877641                   1  356778889998   999999999


Q ss_pred             EEEEEcc---------CCCcccceEEEcccccceeEEEEec--CCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCcC
Q 001362          420 VQLYAYH---------GGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAP  487 (1092)
Q Consensus       420 i~iwd~~---------~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~  487 (1092)
                      |++|+..         +++.+..  ...+|.+.|.+++|+|  +++  ++++++.|++|++||+++++.+..... |...
T Consensus        97 i~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~  172 (343)
T 3lrv_A           97 LLLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE  172 (343)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred             EEEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence            9999765         3332221  1226778999999999  999  899999999999999999998776644 5568


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCce-EEecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001362          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      |.+++|++  ++.+|++|+.||.|++||+++.... ..+.. |..+|.+++|+|+|.+|++++.    + .|++||++++
T Consensus       173 i~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~----~-~v~iwd~~~~  245 (343)
T 3lrv_A          173 YSSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD----Q-TVVCFDLRKD  245 (343)
T ss_dssp             CCEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES----S-BEEEEETTSS
T ss_pred             eEEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC----C-eEEEEEcCCC
Confidence            99999965  7789999999999999999998887 67777 8899999999999999999983    2 6999999998


Q ss_pred             eEEEEEeeccccCCce--EEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc---CCCEEEE
Q 001362          566 AIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLLAV  639 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v--~~~~~~p~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~  639 (1092)
                      +.+..+..+..+...+  .+++|+|+++++++++. |+.+++|++.+.......      ..+..++|++   +...+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~  319 (343)
T 3lrv_A          246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV  319 (343)
T ss_dssp             TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred             CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence            8766655422111333  46999999999999998 999999999765433322      1245677877   8889999


Q ss_pred             EeCCCeEEEEECC
Q 001362          640 IANENRIKILETP  652 (1092)
Q Consensus       640 ~~~dg~i~iw~~~  652 (1092)
                      ++.||.+.++-..
T Consensus       320 ~~~d~~~~~~~~~  332 (343)
T 3lrv_A          320 VCGDGGIAAILKT  332 (343)
T ss_dssp             EEETTEEEEEEEC
T ss_pred             EecCCceEEEEec
Confidence            9999999887543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=9.3e-26  Score=264.56  Aligned_cols=345  Identities=11%  Similarity=0.091  Sum_probs=246.4

Q ss_pred             eecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeec-CCCCcEEEEEECCCCCEEEEEeCCCE
Q 001362          341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNRVVWSPDGSLLGVAYSKHI  419 (1092)
Q Consensus       341 ~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~-~h~~~V~~l~~spdg~~las~~~d~~  419 (1092)
                      +|+|++. ++++++.|++|.+||..+++++.+                   +. ++.  +..++|||||++|++++.|++
T Consensus       144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~  201 (543)
T 1nir_A          144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR  201 (543)
T ss_dssp             CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred             ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence            4899986 789999999999999999998765                   33 333  889999999999999999999


Q ss_pred             EEEEEc--cCCCcccceEEEcccccceeEEEEec----CCCcEEEEEEe-CCCcEEEEECCCCceeEEEecCCcCeEEEe
Q 001362          420 VQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSA----PCKQISVITCG-DDKTIKVWDAVTGSRTYSFEGHGAPVYSLC  492 (1092)
Q Consensus       420 i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~----d~~~l~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  492 (1092)
                      |.+||+  .+++.+.   ++. +...+..++|+|    ||+  ++++++ .+++|.+||..+++++..+..+...+....
T Consensus       202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~  275 (543)
T 1nir_A          202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT  275 (543)
T ss_dssp             EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred             EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence            999999  7766544   454 344679999999    999  566665 589999999999999888764322111111


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE--E
Q 001362          493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR--T  570 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~--~  570 (1092)
                      ++                                 +...+..+.++|++..+++...   +++.|.+||..+++.+.  .
T Consensus       276 ~~---------------------------------~~~~v~~i~~s~~~~~~~vs~~---~~g~i~vvd~~~~~~l~~~~  319 (543)
T 1nir_A          276 YH---------------------------------PEPRVAAIIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTS  319 (543)
T ss_dssp             EE---------------------------------SCCCEEEEEECSSSSEEEEEET---TTTEEEEEECTTSSSCEEEE
T ss_pred             cc---------------------------------cCCceEEEEECCCCCEEEEEEC---CCCeEEEEEecCCCcceeEE
Confidence            11                                 1124667788888777665542   35678888887765433  2


Q ss_pred             EeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEE-EccC-CCEEEEEe-CCCeE
Q 001362          571 YQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKN-GTLLAVIA-NENRI  646 (1092)
Q Consensus       571 ~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~-~~~l~~~~-~dg~i  646 (1092)
                      +. +.   ..+..+.|+|+++++++++ .+++|.+||..+++++..+........-..+. ++|+ +..++++. .|++|
T Consensus       320 i~-~~---~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V  395 (543)
T 1nir_A          320 IG-AA---PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI  395 (543)
T ss_dssp             EE-CC---SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEE
T ss_pred             ec-cC---cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceE
Confidence            22 22   5677899999999887665 68899999999999998887532111112223 4676 55566664 57899


Q ss_pred             EEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccc
Q 001362          647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL  726 (1092)
Q Consensus       647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~  726 (1092)
                      .+|+..+..       |..                                                             
T Consensus       396 ~v~d~~~~~-------~~~-------------------------------------------------------------  407 (543)
T 1nir_A          396 SLIGTDPKN-------HPQ-------------------------------------------------------------  407 (543)
T ss_dssp             EEEECCTTT-------CTT-------------------------------------------------------------
T ss_pred             EEEEeCCCC-------Cch-------------------------------------------------------------
Confidence            999987520       000                                                             


Q ss_pred             ccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001362          727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  806 (1092)
Q Consensus       727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~  806 (1092)
                            +...+                                                     +....    .|...+.
T Consensus       408 ------~~~~~-----------------------------------------------------v~~l~----~~g~~~~  424 (543)
T 1nir_A          408 ------YAWKK-----------------------------------------------------VAELQ----GQGGGSL  424 (543)
T ss_dssp             ------TBTSE-----------------------------------------------------EEEEE----CSCSCCC
T ss_pred             ------hcCeE-----------------------------------------------------EEEEE----cCCCCce
Confidence                  00000                                                     00000    1344556


Q ss_pred             EEEEecCCCEEEEEe--------CCeEEEEEcCCceee-EEe--------cCCCCCeEEEEEcCCCCCEEEEEe-----C
Q 001362          807 CFALSKNDAYLFSAS--------GGVISLYIVMTFKTI-LTI--------MPPSPTATSLAFNPHDNNVIAIGM-----D  864 (1092)
Q Consensus       807 ~~~~s~dg~~l~~~s--------dg~i~iwd~~~~~~~-~~~--------~~~~~~i~~l~~s~~d~~~lasg~-----~  864 (1092)
                      .++++|||++|++++        +++|.+||+.+++.. ..+        ..+...+..++|+| +|+.|+++.     .
T Consensus       425 ~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~  503 (543)
T 1nir_A          425 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKND  503 (543)
T ss_dssp             CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTS
T ss_pred             EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCC
Confidence            778889999888876        468999999998877 443        35667899999999 888888663     4


Q ss_pred             CCcEEEEEcCCceeeEeeccc
Q 001362          865 DSTILIYNARSSEVISKLEGH  885 (1092)
Q Consensus       865 dg~v~iwd~~~~~~~~~l~~h  885 (1092)
                      |+.|.|||..+++++.+++.+
T Consensus       504 ~~~i~v~D~~t~~~~~~i~~~  524 (543)
T 1nir_A          504 SSALVVVDDKTLKLKAVVKDP  524 (543)
T ss_dssp             CCEEEEEETTTTEEEEEECCT
T ss_pred             CCeEEEEECCCceEEEeecCC
Confidence            799999999999999998854

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=4.9e-26  Score=266.88  Aligned_cols=343  Identities=9%  Similarity=0.086  Sum_probs=257.0

Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCceE
Q 001362          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLL  613 (1092)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~--~~~~~~  613 (1092)
                      +++|++..++++..    ++.|.+||..+++++.++....    .+..++|+|+++++++++.|++|++||+  .+++.+
T Consensus       144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~  215 (543)
T 1nir_A          144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV  215 (543)
T ss_dssp             CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence            37888877777654    6679999999999999988544    3889999999999999999999999999  888888


Q ss_pred             EEEeCCCCCCCCceEEEcc----CCCEEEEEeC-CCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCce
Q 001362          614 TTIDAGGGLPENPRICFNK----NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV  688 (1092)
Q Consensus       614 ~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  688 (1092)
                      ..+...   ..+..++|+|    +|+++++++. +++|.+||..+.+.+..+..+...+....+.               
T Consensus       216 ~~i~~g---~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~---------------  277 (543)
T 1nir_A          216 AEIKIG---IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH---------------  277 (543)
T ss_dssp             EEEECC---SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE---------------
T ss_pred             EEEecC---CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc---------------
Confidence            888743   2468999999    9999999885 8999999999887776554221100000000               


Q ss_pred             eecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEE-EeecCCeeEEEeecCCC
Q 001362          689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-ALASNGVHLMWRWPRND  767 (1092)
Q Consensus       689 ~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-~~~~dg~i~lw~~~~~~  767 (1092)
                                                                  ....+.++.+++++..++ +...++.|.+|++....
T Consensus       278 --------------------------------------------~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~  313 (543)
T 1nir_A          278 --------------------------------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID  313 (543)
T ss_dssp             --------------------------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred             --------------------------------------------cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence                                                        123678899999776654 45557899998875431


Q ss_pred             cCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC----
Q 001362          768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP----  841 (1092)
Q Consensus       768 ~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~----  841 (1092)
                      .                      +....+   .+...+..++|+|||+++++++  +++|.+||..+++++..+..    
T Consensus       314 ~----------------------l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p  368 (543)
T 1nir_A          314 N----------------------LTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP  368 (543)
T ss_dssp             S----------------------CEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred             c----------------------ceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence            1                      110011   1345577899999999887765  68999999999999888764    


Q ss_pred             CCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEEcCC-------ceeeEeeccccCCeEEEEEcCCCCEEEEEe-------C
Q 001362          842 PSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSG-------G  906 (1092)
Q Consensus       842 ~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s-------~  906 (1092)
                      |.+....+ ++|+++.+++++. .|++|.+||+.+       +++++++.+|.+.+..++|+|||++|++++       .
T Consensus       369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~  447 (543)
T 1nir_A          369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI  447 (543)
T ss_dssp             CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred             CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence            55444443 5774477778776 689999999998       899999999999999999999999999987       2


Q ss_pred             CCcEEEEEcCCCcee-eeeeeecCCCCcCCCCCceEEEEecCCCEEEEE------eCCcEEEEEcCCceeeeeec
Q 001362          907 DAQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF  974 (1092)
Q Consensus       907 Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~------~d~~i~lwd~~~~~~~~~~~  974 (1092)
                      +++|.|||+.+++.. ....+....+.......+..++|+|||+.+.++      .++.|.|||..+++++..+.
T Consensus       448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence            779999999998754 211111100001112368999999999999874      26899999999999988744

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=1.6e-27  Score=269.98  Aligned_cols=276  Identities=7%  Similarity=-0.022  Sum_probs=179.7

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-  406 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-  406 (1092)
                      .....|...+....+++++. +||+|+.|++|+|||+.+++......              ...+.+|.+.|.+++|+| 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~--------------~~~~~gH~~~v~~v~~~p~  147 (393)
T 4gq1_A           83 YSENLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHV--------------LGGKSGHHNFVNDIDIADV  147 (393)
T ss_dssp             EECC----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEE--------------ECTTTSCSSCEEEEEEEEE
T ss_pred             ccccccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeee--------------ecccCCCCCceEEEEEccc
Confidence            34456666666777777776 79999999999999999887654311              123789999999999998 


Q ss_pred             -------CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001362          407 -------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       407 -------dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                             ||++||+|+.|++|+|||+.++..+.   .+.+|...|.+++|+|++.. +|++++.|++|++||+.+++...
T Consensus       148 ~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~  223 (393)
T 4gq1_A          148 YSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAE  223 (393)
T ss_dssp             ECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC---
T ss_pred             cccccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccc
Confidence                   89999999999999999998875444   56678999999999999864 79999999999999999998776


Q ss_pred             EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEc-cCCCEEEEEecCCCCceeEE
Q 001362          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~~~~~~~~~~i~  558 (1092)
                      ....+.......++.....                   ..........+...+.++.|+ +|++.+++++.    ++.++
T Consensus       224 ~~~~~~~~~~~~~~s~~~~-------------------~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~  280 (393)
T 4gq1_A          224 ENSQTELVKNPWLLTLNTL-------------------PLVNTCHSSGIASSLANVRWIGSDGSGILAMCK----SGAWL  280 (393)
T ss_dssp             -------CSCCCSEEEESG-------------------GGC------CCSSSCSEEEEETTTTCEEEEECT----TSEEE
T ss_pred             cccccCCcccceEEecccc-------------------cceeeeecccccccceeeeeecCCCCEEEEEeC----CCCEE
Confidence            6654443332222211111                   111111223456678888886 79999999875    66799


Q ss_pred             EEeCCCCeEEEEEeeccccCCceEEE------------------EEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001362          559 EWNESEGAIKRTYQGLQLQHNSVSVV------------------HFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~------------------~~~p--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  618 (1092)
                      +||+.++.....+..+.   ..+..+                  .++|  ++.++++|+.||+|++||+.+++....+..
T Consensus       281 vwd~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~  357 (393)
T 4gq1_A          281 RWNLFANNDYNEISDST---MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ  357 (393)
T ss_dssp             EEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE
T ss_pred             EEECccCCCCceEeeec---CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC
Confidence            99999887766665544   222222                  2333  233556688999999999999988777665


Q ss_pred             CCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001362          619 GGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      +.  ..|.+++|+|||++||+++.+| +.+|.+
T Consensus       358 ~~--~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          358 LG--MPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             CS--SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             CC--CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            53  3699999999999999998766 555554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=7.8e-27  Score=264.42  Aligned_cols=328  Identities=14%  Similarity=0.098  Sum_probs=205.0

Q ss_pred             ceEEee---cCCCceEEEEEcCCCcEEEEecCCCCe-----eEEeeeeeeecccccce-----eeEeeecCCCCcEEEEE
Q 001362          337 PMSMDF---HPVQHTLLLVGTNVGDTGLWDVNSGQK-----LFIRNFKVWDIGACSML-----FKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       337 V~~v~~---spdg~~llasg~~d~~v~iwd~~~~~~-----~~~~~~~~~d~~~~~~~-----~~~~~l~~h~~~V~~l~  403 (1092)
                      ..++.|   +|++..+++.| .|+.|.+|+......     ........|+.......     ........|...+....
T Consensus        18 p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (393)
T 4gq1_A           18 PYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS   96 (393)
T ss_dssp             EEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred             CeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence            344444   56665566666 468899998643211     11111222221111000     00112334555556666


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCcccc--eEEEcccccceeEEEEec--------CCCcEEEEEEeCCCcEEEEECC
Q 001362          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQ--QLEIDAHVGNVNDLAFSA--------PCKQISVITCGDDKTIKVWDAV  473 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~--~~~~~~h~~~v~~~~~s~--------d~~~l~l~s~~~d~~i~vwd~~  473 (1092)
                      +++++.+||+++.|++|+|||+.+++....  ...+.+|.+.|++++|+|        |++  +|+||+.|++|+|||+.
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd~~  174 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWRLT  174 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEEEE
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEECC
Confidence            677888999999999999999998765332  223679999999999998        777  89999999999999999


Q ss_pred             CCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001362          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      ++.++..+.+|..+|.+++|+|. +..+|++++.||+|++||+.+.........+.......+++++             
T Consensus       175 ~~~~~~~~~~~~~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~-------------  240 (393)
T 4gq1_A          175 DEGPILAGYPLSSPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN-------------  240 (393)
T ss_dssp             TTEEEEEEEECSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE-------------
T ss_pred             CCceeeeecCCCCCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc-------------
Confidence            99988888899999999999764 2358999999999999999887665443332221111111111             


Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC-----------
Q 001362          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------  621 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----------  621 (1092)
                              ...........+|.   ..+.++.|. |+++.+++++.|+++++||+..+.....+..+..           
T Consensus       241 --------~~~~~~~~~~~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~  309 (393)
T 4gq1_A          241 --------TLPLVNTCHSSGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNV  309 (393)
T ss_dssp             --------SGGGC------CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSE
T ss_pred             --------cccceeeeeccccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccc
Confidence                    11111111223444   678888886 8999999999999999999988766554432211           


Q ss_pred             -----CCCCceEEEcc--CCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCC
Q 001362          622 -----LPENPRICFNK--NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP  694 (1092)
Q Consensus       622 -----~~~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  694 (1092)
                           ........|+|  ++.++++|+.||.|++||..++........|...|.+++|+                     
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafs---------------------  368 (393)
T 4gq1_A          310 QGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWH---------------------  368 (393)
T ss_dssp             EEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEEC---------------------
T ss_pred             ccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEc---------------------
Confidence                 11122344444  44567778889999999999998888888899999999996                     


Q ss_pred             CCCCccceeeccccccceecc
Q 001362          695 KEDVKPEISVEAENKSEVEKP  715 (1092)
Q Consensus       695 s~d~~~l~s~~~d~~i~lw~~  715 (1092)
                       |||++|++++.+| +.+|++
T Consensus       369 -pdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          369 -QDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             -TTSSEEEEEESSE-EEEEEE
T ss_pred             -CCCCEEEEEeCCC-eEEEEE
Confidence             7889999887765 445543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=3.2e-25  Score=252.40  Aligned_cols=307  Identities=9%  Similarity=0.033  Sum_probs=241.6

Q ss_pred             CCCceEEeecCCCceEEEEEc----CCC----cEEEEec--CCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          334 SSSPMSMDFHPVQHTLLLVGT----NVG----DTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~----~d~----~v~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ...|...+|++.|..++++|+    .||    +|+|||+  .+++.+....                 +.+|...+..++
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~  124 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAG  124 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHH
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHH
Confidence            358899999999987888886    457    8999999  9998764322                 556777777777


Q ss_pred             ECC--------------CCCEEEEEeCC------CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC
Q 001362          404 WSP--------------DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD  463 (1092)
Q Consensus       404 ~sp--------------dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~  463 (1092)
                      +++              .+..+++++.+      +.|++||+.++. .+   .+.+|...|.+++|+|||+  .|++++.
T Consensus       125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~  198 (415)
T 2hqs_A          125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF  198 (415)
T ss_dssp             HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence            764              26677777654      799999998543 33   5678999999999999999  7888887


Q ss_pred             CC---cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEE-EEecCCe--EEEEEcCCCCceEEecCCCCceEEEEE
Q 001362          464 DK---TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMAY  537 (1092)
Q Consensus       464 d~---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~  537 (1092)
                      ++   .|++||+.+++.. .+..|...+.+++|+|  ||+.|+ +++.++.  |++||+.+++. ..+..+...+.+++|
T Consensus       199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~  274 (415)
T 2hqs_A          199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW  274 (415)
T ss_dssp             TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred             cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence            75   9999999999875 5667888999999955  677777 6666665  99999987654 556667778999999


Q ss_pred             ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEE
Q 001362          538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLT  614 (1092)
Q Consensus       538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~d---g~i~iwd~~~~~~~~  614 (1092)
                      +|||++|++++.. ++...|++||..+++.. .+..+.   ..+..++|+|+|++|++++.+   ..|++||+.+++.. 
T Consensus       275 spdg~~l~~~s~~-~g~~~i~~~d~~~~~~~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-  348 (415)
T 2hqs_A          275 FPDSQNLAFTSDQ-AGRPQVYKVNINGGAPQ-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-  348 (415)
T ss_dssp             CTTSSEEEEEECT-TSSCEEEEEETTSSCCE-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-
T ss_pred             CCCCCEEEEEECC-CCCcEEEEEECCCCCEE-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-
Confidence            9999999988742 23457999999888743 333333   678899999999999987754   58999999998874 


Q ss_pred             EEeCCCCCCCCceEEEccCCCEEEEEeCCC---eEEEEECCCCceeeecccccCceeeeeecCCCc
Q 001362          615 TIDAGGGLPENPRICFNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPIST  677 (1092)
Q Consensus       615 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~  677 (1092)
                      .+..+   ..+.+++|+|+|++|++++.++   .|++|++. +.....+..+...|.+++|+|...
T Consensus       349 ~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          349 VLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             ECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             EecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence            34333   2588999999999999988876   79999987 556777888999999999997643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1e-23  Score=239.95  Aligned_cols=306  Identities=13%  Similarity=0.115  Sum_probs=228.8

Q ss_pred             ccceeEEEEecCCCcEEEEEEe----CCC----cEEEEEC--CCCcee--EEEecCCcCeEEEeeccc------------
Q 001362          441 VGNVNDLAFSAPCKQISVITCG----DDK----TIKVWDA--VTGSRT--YSFEGHGAPVYSLCPHAK------------  496 (1092)
Q Consensus       441 ~~~v~~~~~s~d~~~l~l~s~~----~d~----~i~vwd~--~~~~~~--~~~~~~~~~v~~~~~~~~------------  496 (1092)
                      ...+...+|++.|.. ++++|+    .||    +|++||+  .+++++  ..+.+|...+..+++.+.            
T Consensus        62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~  140 (415)
T 2hqs_A           62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG  140 (415)
T ss_dssp             GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred             ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence            356788899999886 566776    567    8999999  999987  558899988887776541            


Q ss_pred             CCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001362          497 ENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT  570 (1092)
Q Consensus       497 ~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  570 (1092)
                      ..+..++.++.+      +.|++||++. .....+..+...+.+++|+|||++|++++.++ +...|++||+.+++.. .
T Consensus       141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~  217 (415)
T 2hqs_A          141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q  217 (415)
T ss_dssp             CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred             cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence            113466666654      7999999975 44556666778899999999999999988542 2468999999998875 4


Q ss_pred             EeeccccCCceEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC-CC--
Q 001362          571 YQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-EN--  644 (1092)
Q Consensus       571 ~~~~~~~~~~v~~~~~~p~~~~l~-~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg--  644 (1092)
                      +..+.   ..+.+++|+|+|+.|+ +++.++.  |++||+.+++. ..+..+  ...+.+++|+|||++|++++. ++  
T Consensus       218 l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~~  291 (415)
T 2hqs_A          218 VASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGRP  291 (415)
T ss_dssp             EECCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC--SSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             eecCC---CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC--CCcccceEECCCCCEEEEEECCCCCc
Confidence            55555   6899999999999888 5666554  99999998876 344333  345789999999999988876 34  


Q ss_pred             eEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccc
Q 001362          645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  724 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~  724 (1092)
                      .|++|+..+++... +                                                                
T Consensus       292 ~i~~~d~~~~~~~~-l----------------------------------------------------------------  306 (415)
T 2hqs_A          292 QVYKVNINGGAPQR-I----------------------------------------------------------------  306 (415)
T ss_dssp             EEEEEETTSSCCEE-C----------------------------------------------------------------
T ss_pred             EEEEEECCCCCEEE-E----------------------------------------------------------------
Confidence            45555654331100 0                                                                


Q ss_pred             ccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCC
Q 001362          725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA  804 (1092)
Q Consensus       725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~  804 (1092)
                                                                                              .  .+...
T Consensus       307 ------------------------------------------------------------------------~--~~~~~  312 (415)
T 2hqs_A          307 ------------------------------------------------------------------------T--WEGSQ  312 (415)
T ss_dssp             ------------------------------------------------------------------------C--CSSSE
T ss_pred             ------------------------------------------------------------------------e--cCCCc
Confidence                                                                                    0  02234


Q ss_pred             eeEEEEecCCCEEEEEe-C---CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC---cEEEEEcCCce
Q 001362          805 VPCFALSKNDAYLFSAS-G---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSE  877 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~s-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg---~v~iwd~~~~~  877 (1092)
                      +.+++|+|||++|++++ +   ..|++||+.+++.. .+..+. .+.+++|+| ++++|++++.++   .|++||+. +.
T Consensus       313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~  388 (415)
T 2hqs_A          313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GR  388 (415)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SC
T ss_pred             ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CC
Confidence            55677788888777765 2   47999999988763 455454 899999999 899999888877   79999987 56


Q ss_pred             eeEeeccccCCeEEEEEcCCCC
Q 001362          878 VISKLEGHSKRVTGLVFSDALN  899 (1092)
Q Consensus       878 ~~~~l~~h~~~V~~l~~spdg~  899 (1092)
                      ....+.+|.+.|.+++|+|.-+
T Consensus       389 ~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          389 FKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             CEEECCCSSSEEEEEEECCCCC
T ss_pred             cEEEeeCCCCCCcCCccccccc
Confidence            6788999999999999999643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=2.2e-23  Score=258.49  Aligned_cols=303  Identities=13%  Similarity=0.079  Sum_probs=213.6

Q ss_pred             CCCceEEeecCCCceEEEEEcC-CC-----cEEEEecCCCCeeEEeeeeeee-----cccccceeeEeeecCCCCcEEEE
Q 001362          334 SSSPMSMDFHPVQHTLLLVGTN-VG-----DTGLWDVNSGQKLFIRNFKVWD-----IGACSMLFKTALVRDPGVSVNRV  402 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~-d~-----~v~iwd~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~l~~h~~~V~~l  402 (1092)
                      ...|.+++|||||++ |++++. |+     +|++||+.+++...........     +...........-......|.++
T Consensus        36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            347999999999994 677666 88     8999999999866532110000     00000000000000000348899


Q ss_pred             EECCCCCEEEEEeCCCEEEEEEccCCC--cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001362          403 VWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      +|||||++|++++. +.|++||+.++.  ...   .+..|...+.+++|||||+  .|+.++ ++.|++||+.+++....
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence            99999999999987 899999999882  232   3567888899999999999  677776 56999999999887655


Q ss_pred             EecCCcC----------------eEEEeecccCCccEEEEEecCC---------------------------------eE
Q 001362          481 FEGHGAP----------------VYSLCPHAKENIHFIFSISVDG---------------------------------KI  511 (1092)
Q Consensus       481 ~~~~~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~i  511 (1092)
                      ...+...                +.+++|  ++||++|++++.|+                                 .|
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            5444432                366777  55788899888775                                 78


Q ss_pred             EEEEcCC-CCceEEec--CCCCceEEEEEccCCCEEEEEec-CCCCceeEEEEeCCCCeEEEEEeeccccCC---ceEEE
Q 001362          512 KAWLYDS-LGARVDYD--APGLGCTRMAYSANGRRLFSCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVV  584 (1092)
Q Consensus       512 ~vwd~~~-~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~  584 (1092)
                      .+||+.+ ++......  .+...+..++| |||++|++... ....+..|++||..+++....+..+.  ..   .+..+
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~  342 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPLHNSL  342 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCCCSCC
T ss_pred             EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCcCCce
Confidence            8999987 76554433  35567899999 99999997764 23346789999999999887776654  12   34578


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECC-CCceEEEEeCCCCCCCCceE-EEccCCCEEEEEeC-CC--eEEEEECC
Q 001362          585 HFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIAN-EN--RIKILETP  652 (1092)
Q Consensus       585 ~~~p~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~-dg--~i~iw~~~  652 (1092)
                      +|+|+|+.+++++.+|.+++|.+. ++. ...+..+  ...+..+ .|+|+|+.++..+. ++  .++||++.
T Consensus       343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            999999988889999988888765 344 5555433  2346666 59999997765544 44  78888865

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=6.3e-23  Score=254.40  Aligned_cols=241  Identities=9%  Similarity=0.066  Sum_probs=172.4

Q ss_pred             CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCC----------------eEEEEEcCCCCCEEEEEeC
Q 001362          801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT----------------ATSLAFNPHDNNVIAIGMD  864 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~----------------i~~l~~s~~d~~~lasg~~  864 (1092)
                      +...+.+++|||||++|++++++.|++||+.+++.......+...                +.+++||| |+++|++++.
T Consensus       150 ~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~  228 (741)
T 2ecf_A          150 GEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARI  228 (741)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEE
T ss_pred             CCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEE
Confidence            455678889999999999988889999999888766554444332                47899999 8999999887


Q ss_pred             CC---------------------------------cEEEEEcCC-ceeeEeec--cccCCeEEEEEcCCCCEEEEEeC--
Q 001362          865 DS---------------------------------TILIYNARS-SEVISKLE--GHSKRVTGLVFSDALNILVSSGG--  906 (1092)
Q Consensus       865 dg---------------------------------~v~iwd~~~-~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~--  906 (1092)
                      |+                                 .|++||+.+ ++......  .|...+..++| |||++|++++.  
T Consensus       229 d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~  307 (741)
T 2ecf_A          229 DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSR  307 (741)
T ss_dssp             ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEET
T ss_pred             cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecc
Confidence            65                                 889999998 87655443  47888999999 99999997764  


Q ss_pred             ---CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcC-CceeeeeeccCCCCCE
Q 001362          907 ---DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE-ELTCLKQWFPISSVPI  981 (1092)
Q Consensus       907 ---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~-~~~~~~~~~~~h~~~v  981 (1092)
                         +..|++||+.+++...  .+.......  -..+..++|+|||++++++ .++.+.||.+. ++. ... +..|...|
T Consensus       308 ~~~~~~i~~~d~~~g~~~~--~~~~~~~~~--~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~-l~~~~~~v  381 (741)
T 2ecf_A          308 DQKKLDLVEVTLASNQQRV--LAHETSPTW--VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAA-LTHGNWSV  381 (741)
T ss_dssp             TSSEEEEEEEETTTCCEEE--EEEEECSSC--CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEE-SCCSSSCE
T ss_pred             cCCeEEEEEEECCCCceEE--EEEcCCCCc--CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eee-eeecceEE
Confidence               5679999999876443  222111100  0124678999999977774 56777777765 344 443 55677788


Q ss_pred             EEE-EEecCCCEEEEEE-CCC--cEEEEEcCC-CceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCC----
Q 001362          982 SQA-TFSCDCRMVFTSF-VDG--TLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN---- 1052 (1092)
Q Consensus       982 ~~l-~fs~dg~~l~t~~-~Dg--~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d---- 1052 (1092)
                      ..+ .|||||+.|+..+ .++  .++||++.. +.....+..         ...+  ..++|+| |+.+|++...+    
T Consensus       382 ~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~---------~~~~--~~~~~sp-dg~~l~~~~~~~~~p  449 (741)
T 2ecf_A          382 DELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK---------APGM--HSASFAR-NASVYVDSWSNNSTP  449 (741)
T ss_dssp             EEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC---------SCSE--EEEEECT-TSSEEEEEEEETTEE
T ss_pred             EeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc---------CCCc--eEEEECC-CCCEEEEEecCCCCC
Confidence            887 5999999876554 444  899999875 544444431         1123  3688999 57777766554    


Q ss_pred             CcEEEEeCC
Q 001362         1053 GEVYVIEPN 1061 (1092)
Q Consensus      1053 g~v~~w~~~ 1061 (1092)
                      +.+++|+..
T Consensus       450 ~~~~l~~~~  458 (741)
T 2ecf_A          450 PQIELFRAN  458 (741)
T ss_dssp             EEEEEEETT
T ss_pred             CeEEEEEcC
Confidence            468889874

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=2.6e-23  Score=257.10  Aligned_cols=310  Identities=9%  Similarity=0.088  Sum_probs=222.4

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC---cEEEEEECCCCCEEE
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLG  412 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~~la  412 (1092)
                      .+.+++|||||+ ++++ +.||+|++||+.+++....                   +.+|..   .|.+++|||||++||
T Consensus        18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~   76 (723)
T 1xfd_A           18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL   76 (723)
T ss_dssp             CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred             cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence            578899999998 5666 6889999999999986643                   445554   499999999999999


Q ss_pred             EEeCC---------CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001362          413 VAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1092)
Q Consensus       413 s~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  483 (1092)
                      +++.+         +.+.+||+.+++. ..+....+|...+..++|||||+  .|+.++. +.|++||+.+++.......
T Consensus        77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~  152 (723)
T 1xfd_A           77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST  152 (723)
T ss_dssp             EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred             EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence            99764         7889999999875 22212234555689999999999  5776664 7999999999988776655


Q ss_pred             CCcCe------------------EEEeecccCCccEEEEEecCC----------------------------------eE
Q 001362          484 HGAPV------------------YSLCPHAKENIHFIFSISVDG----------------------------------KI  511 (1092)
Q Consensus       484 ~~~~v------------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i  511 (1092)
                      +...+                  .+++|  ++||+.|++++.|+                                  .|
T Consensus       153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l  230 (723)
T 1xfd_A          153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL  230 (723)
T ss_dssp             CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred             CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence            44433                  67778  55788998887653                                  79


Q ss_pred             EEEEcCCCCceEEecCC------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce----
Q 001362          512 KAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV----  581 (1092)
Q Consensus       512 ~vwd~~~~~~~~~~~~~------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v----  581 (1092)
                      ++||+.+++....+..+      ...+..++|+|||+++++.......+..|++||..+++....+..+.  ...+    
T Consensus       231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~  308 (723)
T 1xfd_A          231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQN  308 (723)
T ss_dssp             EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCC
T ss_pred             EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccC
Confidence            99999888765555543      45788999999999987776554456789999999998877665543  1333    


Q ss_pred             EEEEEcCCCCEEEE--EeCCC------cEEEEE-CCCCce--EEEEeCCCCCCCCce-EEEccCCCEEEEEeCC---CeE
Q 001362          582 SVVHFDTAKDQILA--AGDDH------VIKIWD-MNKVQL--LTTIDAGGGLPENPR-ICFNKNGTLLAVIANE---NRI  646 (1092)
Q Consensus       582 ~~~~~~p~~~~l~~--~s~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~~~~l~~~~~d---g~i  646 (1092)
                      ..++|+|||+.++.  +..++      .|++|| ..++..  ...+... . ..+.. ++|+|||+.|+..+.+   +.+
T Consensus       309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~  386 (723)
T 1xfd_A          309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRR  386 (723)
T ss_dssp             CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred             CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcce
Confidence            37899999998775  44666      577777 344441  3333321 1 22343 6899999999877665   789


Q ss_pred             EEEECCCCc--eeeeccc---ccCceeeeeecCCC
Q 001362          647 KILETPESN--SVDAAGV---LSDNLRKLSVNPIS  676 (1092)
Q Consensus       647 ~iw~~~~~~--~~~~~~~---~~~~v~~~~~~~~~  676 (1092)
                      ++|++....  ....+..   +...+..++++|++
T Consensus       387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg  421 (723)
T 1xfd_A          387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSM  421 (723)
T ss_dssp             EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred             EEEEEeCCCCCCcceecccccCCCCeEEEEECCCC
Confidence            999986432  2333332   34456666666443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=1.1e-22  Score=251.59  Aligned_cols=385  Identities=11%  Similarity=0.075  Sum_probs=254.9

Q ss_pred             ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC---------Cc
Q 001362          531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HV  601 (1092)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~d---------g~  601 (1092)
                      .+.+++|+|||+++++ +.    ++.|++||..+++....+..+......+..++|+|||++|++++.+         +.
T Consensus        18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~   92 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY   92 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred             cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence            3567899999997755 32    5579999999999887777655211248999999999999998764         78


Q ss_pred             EEEEECCCCceEEEEeC-CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccc
Q 001362          602 IKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG  680 (1092)
Q Consensus       602 i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  680 (1092)
                      +++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|+..+++.......+...+             
T Consensus        93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~-------------  157 (723)
T 1xfd_A           93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV-------------  157 (723)
T ss_dssp             EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------------
T ss_pred             EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------------
Confidence            88999999887 33332 222334788999999999999987 799999998775544332211110             


Q ss_pred             ccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-CeeE
Q 001362          681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHL  759 (1092)
Q Consensus       681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~  759 (1092)
                                          +..+..     -|-..              ..-...+.+++|||||+.|++++.+ +.+.
T Consensus       158 --------------------~~~g~~-----~~v~~--------------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~  198 (723)
T 1xfd_A          158 --------------------IYNGLS-----DWLYE--------------EEILKTHIAHWWSPDGTRLAYAAINDSRVP  198 (723)
T ss_dssp             --------------------EEEEEC-----CHHHH--------------HTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred             --------------------eECccc-----ceeEE--------------EEeccCcceEEECCCCCEEEEEEECCCccc
Confidence                                000000     00000              0011245789999999999888765 4667


Q ss_pred             EEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEe
Q 001362          760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI  839 (1092)
Q Consensus       760 lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~  839 (1092)
                      +|++.....                               .+...+..+.|+++|..   ..+..|++||+.+++....+
T Consensus       199 ~~~~~~~~~-------------------------------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l  244 (723)
T 1xfd_A          199 IMELPTYTG-------------------------------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEM  244 (723)
T ss_dssp             EEEECCCSS-------------------------------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEEC
T ss_pred             eEEeeccCC-------------------------------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEe
Confidence            776542110                               02234677888888763   12357999999998876666


Q ss_pred             cCC------CCCeEEEEEcCCCCCEEEEEeC----CCcEEEEEcCCceeeEeecc-ccCCeE----EEEEcCCCCEEEE-
Q 001362          840 MPP------SPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEVISKLEG-HSKRVT----GLVFSDALNILVS-  903 (1092)
Q Consensus       840 ~~~------~~~i~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~~~~~l~~-h~~~V~----~l~~spdg~~l~s-  903 (1092)
                      ..+      ...+..++||| |+++|++...    +..|++||+.++++...+.. |.+.+.    .++|||||+.|+. 
T Consensus       245 ~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          245 MPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             CCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             eCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence            654      56789999999 8888877653    35899999999987766654 334443    7899999998775 


Q ss_pred             -EeCCC------cEEEEE-cCCCceeeeeeeecC-CCCcCCCCCceE-EEEecCCCEEEE-EeC---CcEEEEEcCCce-
Q 001362          904 -SGGDA------QIFVWD-VDGWGIQTCRSLQTP-DGVMTLAPSETH-IQFHKDQTRFLL-VHE---THLAIYEAEELT-  968 (1092)
Q Consensus       904 -~s~Dg------~i~iwd-~~~~~~~~~~~~~~~-~~~~~~~~~v~~-l~~s~dg~~la~-~~d---~~i~lwd~~~~~-  968 (1092)
                       ...++      .|.+|| ..+++..   +.... .+..    .+.. ++|||||+.|+. +.+   +.++||++.... 
T Consensus       324 ~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~  396 (723)
T 1xfd_A          324 RAIPQGGRGKFYHITVSSSQPNSSND---NIQSITSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN  396 (723)
T ss_dssp             EEECCSSSSCEEEEEEECSSCCSSSC---CCCBSCCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred             EecccCCCcceeEEEEEeccCCCCcc---ceeEeecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence             44666      466677 3333200   01111 1222    2444 699999999986 444   679999986432 


Q ss_pred             -eeeeeccC--CCCCEEEEEEecCCCEEEEEECC-C--cEEEEEcCCCceEEee
Q 001362          969 -CLKQWFPI--SSVPISQATFSCDCRMVFTSFVD-G--TLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       969 -~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~D-g--~i~vwd~~~~~~~~~~ 1016 (1092)
                       ....+...  |...+..++|||||++|+..... +  ...+++..++..+..+
T Consensus       397 ~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~  450 (723)
T 1xfd_A          397 FNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL  450 (723)
T ss_dssp             CCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred             CCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence             23322222  67778999999999988865432 2  3455676666554433

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=2.2e-21  Score=214.71  Aligned_cols=280  Identities=10%  Similarity=0.067  Sum_probs=206.7

Q ss_pred             EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC-CC
Q 001362          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KH  418 (1092)
Q Consensus       340 v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~-d~  418 (1092)
                      ..|.+++++++++++.++.|.+||..+++.+..                   +..+...+ +++|+|||++|++++. ++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~   62 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ   62 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence            457777887899999999999999999987764                   22345566 9999999998777765 88


Q ss_pred             EEEEEEccCCCc-ccceEEEcccccceeEEEEecCCCcEEEEEEeCC-C--cEEEEECCCCceeEEEecCCcCeEEEeec
Q 001362          419 IVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       419 ~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  494 (1092)
                      .|.+||+.+++. ..   .+..+..+..+++|+|||+  +++++..+ +  .|.+||+.+++.+..+..+ ....+++|+
T Consensus        63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s  136 (331)
T 3u4y_A           63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS  136 (331)
T ss_dssp             EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred             eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence            999999999875 33   4555666665599999999  56655444 3  8999999999998887654 445788885


Q ss_pred             ccCCcc-EEEEEecCCe-EEEEEcCCCCceE----EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE-
Q 001362          495 AKENIH-FIFSISVDGK-IKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-  567 (1092)
Q Consensus       495 ~~~~~~-~l~s~~~dg~-i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~-  567 (1092)
                      +  +++ ++++...++. |.+|+++......    ...........++|+|||++++++..   .++.|.+||+.+++. 
T Consensus       137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~  211 (331)
T 3u4y_A          137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI  211 (331)
T ss_dssp             T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred             C--CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence            5  565 4455566688 9999998655432    22233456789999999998777653   256799999999887 


Q ss_pred             --EEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce--EEEEeCC----CC-CCCCceEEEccCCCEE
Q 001362          568 --KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL--LTTIDAG----GG-LPENPRICFNKNGTLL  637 (1092)
Q Consensus       568 --~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~~~~l  637 (1092)
                        +..+...    ..+..++|+|+++++++++ .++.|.+||..+++.  +..+...    .. ......++|+|+|++|
T Consensus       212 ~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  287 (331)
T 3u4y_A          212 TLLNAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKL  287 (331)
T ss_dssp             EEEEEEECS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEE
T ss_pred             ceeeeccCC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEE
Confidence              6666543    4677899999999887665 578899999999887  4444322    11 1112458999999988


Q ss_pred             EEEeC-CCeEEEEECCCC
Q 001362          638 AVIAN-ENRIKILETPES  654 (1092)
Q Consensus       638 ~~~~~-dg~i~iw~~~~~  654 (1092)
                      ++++. ++.|.+|++...
T Consensus       288 ~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          288 FISANISRELKVFTISGK  305 (331)
T ss_dssp             EEEETTTTEEEEEETTSC
T ss_pred             EEecCCCCcEEEEEecCC
Confidence            76665 579999999865

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=5.1e-21  Score=235.65  Aligned_cols=238  Identities=9%  Similarity=-0.003  Sum_probs=166.0

Q ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc-cceEEEcccc-----------------cceeEEEEecCCCcEEEEE
Q 001362          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHV-----------------GNVNDLAFSAPCKQISVIT  460 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~-----------------~~v~~~~~s~d~~~l~l~s  460 (1092)
                      +..+.|+  |+.+++++.++ | +||+.+|+.+ ..   +..|.                 ..|.+++|||| +  .++.
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~   97 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL   97 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence            4457788  66777777888 8 9999998763 32   22332                 46999999999 5  3443


Q ss_pred             EeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-----CCceEEecCCCCc----
Q 001362          461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVDYDAPGLG----  531 (1092)
Q Consensus       461 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~----  531 (1092)
                      +. ++.|++||+.+++... +..+...+.+++|+  +||+.|+++ .++.|++||+.+     ++...........    
T Consensus        98 ~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g  172 (706)
T 2z3z_A           98 FT-QGGLVGFDMLARKVTY-LFDTNEETASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG  172 (706)
T ss_dssp             EE-TTEEEEEETTTTEEEE-EECCTTCCTTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred             EE-CCEEEEEECCCCceEE-ccCCcccccCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence            33 5999999999887654 44567778888885  477888884 789999999988     6655443333332    


Q ss_pred             ----------eEEEEEccCCCEEEEEecC-----------------------------CCCceeEEEEeCCCCeEEEEEe
Q 001362          532 ----------CTRMAYSANGRRLFSCGTS-----------------------------KEGESFLVEWNESEGAIKRTYQ  572 (1092)
Q Consensus       532 ----------i~~~~~s~dg~~l~~~~~~-----------------------------~~~~~~i~iwd~~~~~~~~~~~  572 (1092)
                                +.+++|+|||++|++++.+                             ...+..|++||+.+++......
T Consensus       173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~  252 (706)
T 2z3z_A          173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT  252 (706)
T ss_dssp             SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred             cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence                      4789999999999988632                             1245789999999988755443


Q ss_pred             eccccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEe-CCC--CCCCCceEEEcc--CCCEEEEEeC
Q 001362          573 GLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID-AGG--GLPENPRICFNK--NGTLLAVIAN  642 (1092)
Q Consensus       573 ~~~~~~~~v~~~~~~p~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~-~~~--~~~~v~~v~~s~--~~~~l~~~~~  642 (1092)
                      ... +...+..++|+||++++++++.++     .|++||+.+++....+. ...  ....+..++|+|  ||++++++..
T Consensus       253 ~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~  331 (706)
T 2z3z_A          253 GEP-KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR  331 (706)
T ss_dssp             CSC-TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred             CCC-CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence            211 236789999999999999987665     89999999984333332 111  111246788999  8888888877


Q ss_pred             CCeEEEEECC
Q 001362          643 ENRIKILETP  652 (1092)
Q Consensus       643 dg~i~iw~~~  652 (1092)
                      ++.+++|.+.
T Consensus       332 ~g~~~l~~~~  341 (706)
T 2z3z_A          332 DGWNHLYLYD  341 (706)
T ss_dssp             TSSCEEEEEE
T ss_pred             CCccEEEEEE
Confidence            7777777654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=2e-21  Score=239.21  Aligned_cols=243  Identities=11%  Similarity=0.087  Sum_probs=170.3

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCC-----ceeeEEecCCCCC--------------eEEEEEcCCCCCEEEEEe-
Q 001362          804 AVPCFALSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPT--------------ATSLAFNPHDNNVIAIGM-  863 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~-----~~~~~~~~~~~~~--------------i~~l~~s~~d~~~lasg~-  863 (1092)
                      .+.+++|||||++|+++.++.|++||+.+     ++.......+...              +.+++||| |+++|++++ 
T Consensus       122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~  200 (706)
T 2z3z_A          122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM  200 (706)
T ss_dssp             CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred             cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence            34556788888888777778888888877     6655444333332              58999999 899999987 


Q ss_pred             --------------------------------CCCcEEEEEcCCceeeEeec--cccCCeEEEEEcCCCCEEEEEeCCC-
Q 001362          864 --------------------------------DDSTILIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDA-  908 (1092)
Q Consensus       864 --------------------------------~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg-  908 (1092)
                                                      .+..|++||+.+++......  .|...+.+++|+|||++|++++.++ 
T Consensus       201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  280 (706)
T 2z3z_A          201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA  280 (706)
T ss_dssp             ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred             CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence                                            44689999999988655443  4777899999999999999988776 


Q ss_pred             ----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEec--CCCEEEEE-eCCcEEEEEcC-CceeeeeeccCCCCC
Q 001362          909 ----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRFLLV-HETHLAIYEAE-ELTCLKQWFPISSVP  980 (1092)
Q Consensus       909 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~la~~-~d~~i~lwd~~-~~~~~~~~~~~h~~~  980 (1092)
                          .|++||+.+++..............   ..+..++|+|  ||++++++ .++.++||++. ++..+.. +..|...
T Consensus       281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~~---~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~-l~~~~~~  356 (706)
T 2z3z_A          281 QNECKVNAYDAETGRFVRTLFVETDKHYV---EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ-VTKGEWE  356 (706)
T ss_dssp             SCEEEEEEEETTTCCEEEEEEEEECSSCC---CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE-CCCSSSC
T ss_pred             CCeeEEEEEECCCCceeeEEEEccCCCeE---CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe-cCCCCeE
Confidence                8999999987322211111111111   1246789999  99988875 56788888876 5555555 4556777


Q ss_pred             EEE-EEEecCCCEEEEEECC-C----cEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCC--
Q 001362          981 ISQ-ATFSCDCRMVFTSFVD-G----TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-- 1052 (1092)
Q Consensus       981 v~~-l~fs~dg~~l~t~~~D-g----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d-- 1052 (1092)
                      +.. ++|+|||+.|++++.+ +    .|..||+.++... .+.         +...+  .+++|+| |+.++++++.+  
T Consensus       357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~---------~~~~~--~~~~~sp-dg~~l~~~~~~~~  423 (706)
T 2z3z_A          357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-DLT---------PESGM--HRTQLSP-DGSAIIDIFQSPT  423 (706)
T ss_dssp             EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC---------CSSSE--EEEEECT-TSSEEEEEEECSS
T ss_pred             EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-ecc---------CCCce--EEEEECC-CCCEEEEEecCCC
Confidence            876 7999999988766654 3    5777777776532 222         12223  3688999 57877776554  


Q ss_pred             --CcEEEEeCCCCC
Q 001362         1053 --GEVYVIEPNEPG 1064 (1092)
Q Consensus      1053 --g~v~~w~~~~~~ 1064 (1092)
                        +.|++||+....
T Consensus       424 ~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          424 VPRKVTVTNIGKGS  437 (706)
T ss_dssp             CSCEEEEEESSSCE
T ss_pred             CCcEEEEEECCCCe
Confidence              469999986543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=7.2e-21  Score=212.72  Aligned_cols=274  Identities=11%  Similarity=0.085  Sum_probs=213.2

Q ss_pred             CCceEEeecCCCceEEEEEcC------CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001362          335 SSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~------d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      ..+..++|+|+|++++++...      ++.|.+||..+++.+....                    ....+..++|+|||
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~s~dg  100 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATINNTT  100 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEEETTT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEECCCC
Confidence            478899999999865555433      6789999999998776421                    22357789999999


Q ss_pred             CEEEEE-eCCCEEEEEEccCCCcccceEEEccccc---------ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001362          409 SLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVG---------NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       409 ~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~---------~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      ++++++ ..++.|.+||..+++.+.   .+..+..         .+.+++|+|+|+.+++...+.++.|.+||..+++.+
T Consensus       101 ~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~  177 (353)
T 3vgz_A          101 QTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK  177 (353)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred             CEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence            976655 457899999999987654   3333322         278899999999532222246889999999999999


Q ss_pred             EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC----CCCceEEEEEccCCCEEEEEecCCCCc
Q 001362          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      ..+..+...+..++|+  ++++++++++.++.|.+||..+.+....+..    +...+..++|+|+|++++++..   .+
T Consensus       178 ~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~  252 (353)
T 3vgz_A          178 TAIQNTGKMSTGLALD--SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KA  252 (353)
T ss_dssp             EEECCCCTTCCCCEEE--TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SS
T ss_pred             EEecCCCCccceEEEC--CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CC
Confidence            8887666667888885  4778899999999999999998877666554    3446788999999998887753   25


Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001362          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  633 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1092)
                      +.|.+||..+++.+..+....     ...++|+|+++++++++ .++.|.+||..+++.+..+....   .+..++|+|+
T Consensus       253 ~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~d  324 (353)
T 3vgz_A          253 AEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSAD  324 (353)
T ss_dssp             SEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTT
T ss_pred             CEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCC
Confidence            679999999999888877533     25689999999777665 68999999999999988887653   3689999999


Q ss_pred             CCEEEEEeCCC
Q 001362          634 GTLLAVIANEN  644 (1092)
Q Consensus       634 ~~~l~~~~~dg  644 (1092)
                      |++++++..++
T Consensus       325 g~~l~v~~~~~  335 (353)
T 3vgz_A          325 GKTLYVSVKQK  335 (353)
T ss_dssp             SCEEEEEEECC
T ss_pred             CCEEEEEEccc
Confidence            99887776653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=2.4e-20  Score=207.50  Aligned_cols=277  Identities=14%  Similarity=0.152  Sum_probs=193.6

Q ss_pred             CceEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC-CEEEEE
Q 001362          346 QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLY  423 (1092)
Q Consensus       346 g~~llasg~~d~~v~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d-~~i~iw  423 (1092)
                      +++++++++.|+.|.+||+.. ++.....                  ...|...+.+++|+|+|++|++++.+ +.|.+|
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~   65 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY   65 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence            345667778899999999963 4322111                  12367789999999999999998876 899999


Q ss_pred             Ecc--CCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC---CCceeEEEecCCcCeEEEeecccCC
Q 001362          424 AYH--GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCPHAKEN  498 (1092)
Q Consensus       424 d~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~  498 (1092)
                      ++.  +++. .....+..+. .+.+++|+|+++. +++++..++.|.+||+.   +++.+..+..+ ..+.+++|++  +
T Consensus        66 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~--d  139 (343)
T 1ri6_A           66 RIAPDDGAL-TFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP--D  139 (343)
T ss_dssp             EECTTTCCE-EEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT--T
T ss_pred             EecCCCCce-eeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC--C
Confidence            998  5442 2222344333 7899999999994 33444558899999994   44455555443 4577888854  6


Q ss_pred             ccEEEEEe-cCCeEEEEEcCC-CCceE----EecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeE--
Q 001362          499 IHFIFSIS-VDGKIKAWLYDS-LGARV----DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--  567 (1092)
Q Consensus       499 ~~~l~s~~-~dg~i~vwd~~~-~~~~~----~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~--  567 (1092)
                      ++++++++ .++.|.+||+.. +....    .... ....+..++|+|+|+++++++.   .++.|.+|+..  +++.  
T Consensus       140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~  216 (343)
T 1ri6_A          140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC  216 (343)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred             CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence            67777777 899999999987 43321    2222 3447888999999998877652   25679999985  3433  


Q ss_pred             EEEEeecc---ccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECC--CC--ceEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001362          568 KRTYQGLQ---LQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMN--KV--QLLTTIDAGGGLPENPRICFNKNGTLLAV  639 (1092)
Q Consensus       568 ~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~-s~dg~i~iwd~~--~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  639 (1092)
                      ...+....   .....+..++|+|++++++++ ..++.|.+||+.  ++  +.+..+....   .+..++|+|+|++|++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~  293 (343)
T 1ri6_A          217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA  293 (343)
T ss_dssp             EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred             EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence            22222111   012356789999999988755 478999999998  33  3444454432   2789999999999888


Q ss_pred             Ee-CCCeEEEEECC
Q 001362          640 IA-NENRIKILETP  652 (1092)
Q Consensus       640 ~~-~dg~i~iw~~~  652 (1092)
                      ++ .++.+.+|++.
T Consensus       294 ~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          294 AGQKSHHISVYEIV  307 (343)
T ss_dssp             ECTTTCEEEEEEEE
T ss_pred             ecCCCCeEEEEEEc
Confidence            88 57999999554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=2.6e-20  Score=207.16  Aligned_cols=205  Identities=10%  Similarity=0.161  Sum_probs=144.2

Q ss_pred             CeeEEEEecCCCEEEEEe--CCeEEEEEc---CCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEEcCC-c
Q 001362          804 AVPCFALSKNDAYLFSAS--GGVISLYIV---MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-S  876 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~---~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~-~  876 (1092)
                      .+..++|+|+|+++++++  ++.|.+||+   .+.+.+..+..+ ..+.+++|+| ++++|++++ .++.|++||+.+ +
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~  162 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVSDDG  162 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEecCCC
Confidence            456788888888776665  577999988   444555555533 4688999999 888777777 899999999987 6


Q ss_pred             eeeE----eecc-ccCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCC--CceeeeeeeecCCCCcCCCCCceEEEEecCC
Q 001362          877 EVIS----KLEG-HSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  948 (1092)
Q Consensus       877 ~~~~----~l~~-h~~~V~~l~~spdg~~l~s~s-~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg  948 (1092)
                      +...    .+.. ....+..++|+|++++|+.++ .++.|.+|++..  ++......+............+..++|+|||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  242 (343)
T 1ri6_A          163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG  242 (343)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred             ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence            5432    2232 345788999999999776554 789999999954  4433223333222211111256789999999


Q ss_pred             CEEEE-E-eCCcEEEEEcC--Cc--eeeeeeccCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEEc--CCCce
Q 001362          949 TRFLL-V-HETHLAIYEAE--EL--TCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SNLEV 1012 (1092)
Q Consensus       949 ~~la~-~-~d~~i~lwd~~--~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~Dg~i~vwd~--~~~~~ 1012 (1092)
                      ++|++ . .++.|.+||+.  ++  +.+.. ...+. .+..++|+|||++|++++ .++.|.+|++  .+|++
T Consensus       243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~  313 (343)
T 1ri6_A          243 RHLYACDRTASLITVFSVSEDGSVLSKEGF-QPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  313 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCCEEEEEE-EECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             CEEEEEecCCCEEEEEEEcCCCCceEEeee-ecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence            98886 3 57899999998  33  33333 22233 388999999999998888 5799999955  46644

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=3.4e-20  Score=205.70  Aligned_cols=279  Identities=10%  Similarity=0.049  Sum_probs=207.8

Q ss_pred             EEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC-cEEEEEECCCCCEEEE-EeCCCEEEEEEcc
Q 001362          349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SVNRVVWSPDGSLLGV-AYSKHIVQLYAYH  426 (1092)
Q Consensus       349 llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~-~V~~l~~spdg~~las-~~~d~~i~iwd~~  426 (1092)
                      ++++++.+++|.+||+.+++.+....                  .++.. .+..++|+|||+++++ ++.++.|.+||+.
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~   64 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence            68889999999999999988765411                  12222 4788999999987755 4567899999999


Q ss_pred             CCCcccceEEEcc---cccceeEEEEecCCCcEEEEEEe------------CCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001362          427 GGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       427 ~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~l~l~s~~------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~  491 (1092)
                      +++.+... ....   |...+.+++|+|||+  .+++++            .++.|.+||+.+++.+..+.. ...+..+
T Consensus        65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~  140 (337)
T 1pby_B           65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML  140 (337)
T ss_dssp             TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred             CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence            98755422 1111   233678999999999  455554            579999999999998887764 4457778


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc-----------------
Q 001362          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE-----------------  554 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~-----------------  554 (1092)
                      +|+  +++++|+++  ++.|.+||+.+++....+..... ...+.|+|||+.++..+.... .                 
T Consensus       141 ~~s--~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~  214 (337)
T 1pby_B          141 AWA--RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSG-VMATPFYTARKDIDPADP  214 (337)
T ss_dssp             EEC--TTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTT-EEEEEEEEEBTTSCTTSG
T ss_pred             EEC--CCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCC-ceeeeeeccccccccccc
Confidence            885  466777777  68999999998877665554331 112378999987765543111 1                 


Q ss_pred             ----eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001362          555 ----SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       555 ----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                          ..|.+||..+++.. .+.... +...+..++|+|++++++++  ++.|++||+.+++.+..+....   .+.+++|
T Consensus       215 ~~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~  287 (337)
T 1pby_B          215 TAYRTGLLTMDLETGEMA-MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNV  287 (337)
T ss_dssp             GGEEEEEEEEETTTCCEE-EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEE
T ss_pred             cccccceEEEeCCCCCce-EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEE
Confidence                14799999998875 322211 12568889999999999888  7999999999999888877543   4689999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCceeeeccc
Q 001362          631 NKNGTLLAVIANENRIKILETPESNSVDAAGV  662 (1092)
Q Consensus       631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  662 (1092)
                      +|+|+++++++.++.|.+||+.+++.+..+..
T Consensus       288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          288 STDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             CTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            99999999999999999999999887766553

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=4.1e-20  Score=204.98  Aligned_cols=278  Identities=13%  Similarity=0.096  Sum_probs=204.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEE-EeCCCeEEEEECCCCceeeecccccCceee
Q 001362          591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRK  669 (1092)
Q Consensus       591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~  669 (1092)
                      +++++++.++.|++||..+++.+..+........+..++|+|+|+++++ +..++.|.+||..+++....+.....    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~----   77 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP----   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT----
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc----
Confidence            4688899999999999999999888875432113678999999987654 45578999999887644332210000    


Q ss_pred             eeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEE
Q 001362          670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI  749 (1092)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  749 (1092)
                                                                                                  +   
T Consensus        78 ----------------------------------------------------------------------------~---   78 (337)
T 1pby_B           78 ----------------------------------------------------------------------------E---   78 (337)
T ss_dssp             ----------------------------------------------------------------------------T---
T ss_pred             ----------------------------------------------------------------------------c---
Confidence                                                                                        0   


Q ss_pred             EEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE---------
Q 001362          750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA---------  820 (1092)
Q Consensus       750 ~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~---------  820 (1092)
                                                                        .+...+.+++|+|||++++++         
T Consensus        79 --------------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~  108 (337)
T 1pby_B           79 --------------------------------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELT  108 (337)
T ss_dssp             --------------------------------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred             --------------------------------------------------cccccccceEECCCCCEEEEEecccccccc
Confidence                                                              000012234555555555554         


Q ss_pred             ----eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecccc--CCeEEEEE
Q 001362          821 ----SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS--KRVTGLVF  894 (1092)
Q Consensus       821 ----sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~  894 (1092)
                          .++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++  ++.|++||+.+++.+..+..+.  .+   +.|
T Consensus       109 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~  181 (337)
T 1pby_B          109 HFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAE---TYA  181 (337)
T ss_dssp             CEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTT---TBC
T ss_pred             cccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCC---cee
Confidence                358899999999988877764 45678899999 88888877  6899999999999887776544  33   378


Q ss_pred             cCCCCEEEEEeCCC------------------------cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCE
Q 001362          895 SDALNILVSSGGDA------------------------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  950 (1092)
Q Consensus       895 spdg~~l~s~s~Dg------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~  950 (1092)
                      +||++.++..+.++                        .|.+||+.+++... .....   +.   ..+.+++|+|||++
T Consensus       182 s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~---~~---~~~~~~~~s~dg~~  254 (337)
T 1pby_B          182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM-REVRI---MD---VFYFSTAVNPAKTR  254 (337)
T ss_dssp             CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE-EEEEE---CS---SCEEEEEECTTSSE
T ss_pred             CCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE-eecCC---CC---CceeeEEECCCCCE
Confidence            99998776554332                        46899999877541 11211   11   24778999999999


Q ss_pred             EEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001362          951 FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       951 la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      ++++ ++.|.+||+.+++.+..+..  ...+.+++|+|||++|++++.++.|.+||+.+++.+..+..
T Consensus       255 l~~~-~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          255 AFGA-YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEe-CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            9888 79999999999988776443  34678999999999999999999999999999999887763

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=1e-19  Score=201.21  Aligned_cols=284  Identities=11%  Similarity=0.038  Sum_probs=195.6

Q ss_pred             EEecCCcE-EEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEE
Q 001362          741 TYNNGGQA-IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS  819 (1092)
Q Consensus       741 ~~s~~g~~-l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~  819 (1092)
                      .|.+++.. +++...++.|.+|+...                      +........    +...+ .++|+|||+++++
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~~----~~~~~-~~~~s~dg~~l~~   56 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDT----------------------LEILNQITL----GYDFV-DTAITSDCSNVVV   56 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTT----------------------CCEEEEEEC----CCCEE-EEEECSSSCEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcc----------------------cceeeeEEc----cCCcc-eEEEcCCCCEEEE
Confidence            35555555 55666678888887543                      332333222    34445 9999999997777


Q ss_pred             Ee--CCeEEEEEcCCcee-eEEecCCCCCeEEEEEcCCCCCEEEEEeCCC---cEEEEEcCCceeeEeeccccCCeEEEE
Q 001362          820 AS--GGVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSEVISKLEGHSKRVTGLV  893 (1092)
Q Consensus       820 ~s--dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg---~v~iwd~~~~~~~~~l~~h~~~V~~l~  893 (1092)
                      ++  ++.|.+||..+++. ...+..+.....+++|+| ++++|+++..++   .|.+||+.+++.+..+..+ ..+.+++
T Consensus        57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~  134 (331)
T 3u4y_A           57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIA  134 (331)
T ss_dssp             EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEE
T ss_pred             EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceE
Confidence            65  57999999999987 677766666665699999 899888655553   8999999999988887754 4578999


Q ss_pred             EcCCCCEEEEE-eCCCc-EEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCCcEEEEEcCCcee
Q 001362          894 FSDALNILVSS-GGDAQ-IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC  969 (1092)
Q Consensus       894 ~spdg~~l~s~-s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~~  969 (1092)
                      |+|||++|+++ ..++. |.+|++.................    ..+..++|+|||++++++  .++.|.+||+.+++.
T Consensus       135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG----TRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS----SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred             ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence            99999865544 55688 99999986432211111111111    247899999999977663  468899999998887


Q ss_pred             ---eeeeccCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEEcCCCce--EEeeccccccCCCCccCccc-ceEEEECCCC
Q 001362          970 ---LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEV--QCRILSTAYLRPTTSCLHVY-PHAIAAHPLK 1042 (1092)
Q Consensus       970 ---~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~-~~~~~~~p~~ 1042 (1092)
                         +..+.  +...+..++|+|||++|++++ .++.|.+||+.+++.  +..+.......    ..... ...++|+| |
T Consensus       211 ~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~sp-d  283 (331)
T 3u4y_A          211 ITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLID----PRPLFGANQMALNK-T  283 (331)
T ss_dssp             CEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCC----CGGGTTCCCEEECT-T
T ss_pred             cceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccC----CCCcccccceEECC-C
Confidence               65533  346778899999999877665 578899999999987  33332110011    11111 13478999 4


Q ss_pred             CCEEEEEe-CCCcEEEEeCCCCC
Q 001362         1043 PTQFAVGL-TNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1043 ~~~l~~~~-~dg~v~~w~~~~~~ 1064 (1092)
                      +.+|++++ .++.|.+||+....
T Consensus       284 g~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          284 ETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             SSEEEEEETTTTEEEEEETTSCE
T ss_pred             CCEEEEecCCCCcEEEEEecCCc
Confidence            67665554 56799999996544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=2.7e-19  Score=199.85  Aligned_cols=249  Identities=13%  Similarity=0.125  Sum_probs=196.1

Q ss_pred             CCcEEEEEECCCCCEEEEEeC-------CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEE
Q 001362          396 GVSVNRVVWSPDGSLLGVAYS-------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~-------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  468 (1092)
                      ...+..++|+|||++|++++.       ++.|.+||..+++.+..   +. ....+..++|+|+|+. +++++..++.|.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v~  114 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---IH-NDLKPFGATINNTTQT-LWFGNTVNSAVT  114 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---EE-ESSCCCSEEEETTTTE-EEEEETTTTEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---Ee-cCCCcceEEECCCCCE-EEEEecCCCEEE
Confidence            356889999999999988874       56899999999876553   32 2345788999999985 456667789999


Q ss_pred             EEECCCCceeEEEecCCcC---------eEEEeecccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCceEEEEE
Q 001362          469 VWDAVTGSRTYSFEGHGAP---------VYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAY  537 (1092)
Q Consensus       469 vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~  537 (1092)
                      +||..+++.+..+..+...         +.++++++  ++.++++++  .++.|.+||..+.+....+......+..++|
T Consensus       115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  192 (353)
T 3vgz_A          115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL  192 (353)
T ss_dssp             EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred             EEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence            9999999998888765432         57788855  556666655  4789999999988887777756666788999


Q ss_pred             ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc-cCCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEE
Q 001362          538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTT  615 (1092)
Q Consensus       538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~s~-dg~i~iwd~~~~~~~~~  615 (1092)
                      +|+|++++++..    ++.|.+||..+++.+..+..... +...+..++|+|+++++++++. ++.|.+||..+++.+..
T Consensus       193 s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  268 (353)
T 3vgz_A          193 DSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK  268 (353)
T ss_dssp             ETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             CCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            999999998864    56799999999998887765221 2356788999999998877664 59999999999999888


Q ss_pred             EeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCceeee
Q 001362          616 IDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDA  659 (1092)
Q Consensus       616 ~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~  659 (1092)
                      +....    ...++|+|+|++++++. .++.|.+||..+++.+..
T Consensus       269 ~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~  309 (353)
T 3vgz_A          269 VAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT  309 (353)
T ss_dssp             EECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence            87543    25799999999766665 689999999987755443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=1.1e-20  Score=205.16  Aligned_cols=257  Identities=14%  Similarity=0.121  Sum_probs=187.6

Q ss_pred             EEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccC-CCc
Q 001362          352 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG-GSD  430 (1092)
Q Consensus       352 sg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~-~~~  430 (1092)
                      .++.|++|++||+.+++...                    +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~   75 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP   75 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred             CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence            44678999999999887553                    345788999999999999999986 77899999998 764


Q ss_pred             ccceEEEccc-ccceeEEEEecCCCcEEEEEEe--CCCcEEEE--ECCCCceeEEEecCCcCeEEEeecccCCccEEE-E
Q 001362          431 ARQQLEIDAH-VGNVNDLAFSAPCKQISVITCG--DDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-S  504 (1092)
Q Consensus       431 ~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s  504 (1092)
                      ..   ...+| ...+.+++|+||++  .+++++  .++...||  +..+++ ...+..+. .+..++|++  +++.|+ +
T Consensus        76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp--dg~~l~~~  146 (297)
T 2ojh_A           76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP--DGKSFTYC  146 (297)
T ss_dssp             EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT--TSSEEEEE
T ss_pred             eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC--CCCEEEEE
Confidence            43   23344 46789999999999  677777  33445555  545554 44454343 478888854  666666 7


Q ss_pred             EecCCeEEEEEcCCC-CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceE
Q 001362          505 ISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVS  582 (1092)
Q Consensus       505 ~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~  582 (1092)
                      ++.++.+++|+++.. .....+..+...+.+++|+|+|+++++++..   ++.+.+|+.. .+.....+..+.   ..+.
T Consensus       147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---~~~~  220 (297)
T 2ojh_A          147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSA---YGDW  220 (297)
T ss_dssp             EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCS---EEEE
T ss_pred             ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCC---cccC
Confidence            889999999997543 3445566667789999999999998877631   2346666654 344455565555   6788


Q ss_pred             EEEEcCCCCEEEEEeCC-----------CcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001362          583 VVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       583 ~~~~~p~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      .++|+|++++|++++.+           +.|++||+.+++.........+...+..++|+|++++|++++.+.
T Consensus       221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            99999999999888765           569999999887654443222234588899999999999887753

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=1.5e-20  Score=231.80  Aligned_cols=377  Identities=12%  Similarity=0.039  Sum_probs=244.2

Q ss_pred             EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC---------CCcEEE
Q 001362          534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------DHVIKI  604 (1092)
Q Consensus       534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~---------dg~i~i  604 (1092)
                      .++|+|||++++++ .    ++.|++||..+++....+.++......+.+++|+|||++|++++.         ++.|++
T Consensus        20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~   94 (719)
T 1z68_A           20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI   94 (719)
T ss_dssp             CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence            57899999655543 2    556999999999988777765411124889999999999998876         789999


Q ss_pred             EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc-cccCceeeeeecCCCccccccc
Q 001362          605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVTGAGI  683 (1092)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~  683 (1092)
                      ||+.+++.+......   ..+..++|||||+.|+.+. ++.|++|++.+++...... ++...                 
T Consensus        95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~-----------------  153 (719)
T 1z68_A           95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENK-----------------  153 (719)
T ss_dssp             EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTT-----------------
T ss_pred             EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCC-----------------
Confidence            999998763111111   3478899999999999986 6899999998775443221 00000                 


Q ss_pred             cCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-CeeEEEe
Q 001362          684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWR  762 (1092)
Q Consensus       684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~lw~  762 (1092)
                                       +..|..+   .++.-                .-.....+++|||||+.|+.++.| +.+.+|.
T Consensus       154 -----------------v~~g~~~---~v~~e----------------e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~  197 (719)
T 1z68_A          154 -----------------IFNGIPD---WVYEE----------------EMLATKYALWWSPNGKFLAYAEFNDTDIPVIA  197 (719)
T ss_dssp             -----------------EEESSCC---HHHHH----------------HTTCSSCCEEECTTSSEEEEEEEECTTSCEEE
T ss_pred             -----------------eEccccc---ceeee----------------ecccCcccEEECCCCCEEEEEEECCCCCceEE
Confidence                             0000000   00000                001123468999999999988765 5556665


Q ss_pred             ecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceee------
Q 001362          763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI------  836 (1092)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~------  836 (1092)
                      +.....                               .+...+..+.+...|..   .....|++||+.+++..      
T Consensus       198 ~~~~~~-------------------------------~~~~~~~~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~~~~~  243 (719)
T 1z68_A          198 YSYYGD-------------------------------EQYPRTINIPYPKAGAK---NPVVRIFIIDTTYPAYVGPQEVP  243 (719)
T ss_dssp             EEECCS-------------------------------SSSCEEEEEECCBTTSC---CCEEEEEEEESSCHHHHCCEECC
T ss_pred             eeccCC-------------------------------CCCccceeecCCCCCCC---CCeeEEEEEECCCCCccceeEcc
Confidence            432100                               02223445555444431   01247999999988753      


Q ss_pred             --EEecCCCCCeEEEEEcCCCCCEEEEEeCCC----cEEEEE----cCCceeeEee----ccccCCeE-----EEEEcCC
Q 001362          837 --LTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYN----ARSSEVISKL----EGHSKRVT-----GLVFSDA  897 (1092)
Q Consensus       837 --~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd----~~~~~~~~~l----~~h~~~V~-----~l~~spd  897 (1092)
                        ..+.+|...+..++||| |++++++....+    .|.+||    +.++++...+    .+|.+.+.     .++|+||
T Consensus       244 ~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd  322 (719)
T 1z68_A          244 VPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD  322 (719)
T ss_dssp             CCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred             CCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence              12335777899999999 788777754332    488999    8888877666    46777777     8999999


Q ss_pred             CCEEEE--EeCCC--cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeC-----CcEEEEEcCC-
Q 001362          898 LNILVS--SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAEE-  966 (1092)
Q Consensus       898 g~~l~s--~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d-----~~i~lwd~~~-  966 (1092)
                      |+.|+.  ...+|  .|.+||+.+++..   .+.  .+.    ..+..+.++ +++.|+. +.+     +..++|.+.. 
T Consensus       323 g~~l~~~~~~~~g~~~l~~~~~~~~~~~---~lt--~~~----~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~  392 (719)
T 1z68_A          323 AISYYKIFSDKDGYKHIHYIKDTVENAI---QIT--SGK----WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIG  392 (719)
T ss_dssp             SSCEEEEEECTTSCEEEEEESSCSTTCE---ECS--CSS----SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECS
T ss_pred             CCeEEEEEEccCCceEEEEEECCCCceE---ecc--cCc----eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCC
Confidence            996654  44555  4667777665421   121  111    146778888 8888877 443     6788887753 


Q ss_pred             -cee-eeee---ccCCCCCEEEEEEecCCCEEEEE-ECC--CcEEEEEcCCCceEEeec
Q 001362          967 -LTC-LKQW---FPISSVPISQATFSCDCRMVFTS-FVD--GTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       967 -~~~-~~~~---~~~h~~~v~~l~fs~dg~~l~t~-~~D--g~i~vwd~~~~~~~~~~~ 1017 (1092)
                       +.. ...+   +.+|...+..+.|||||++++.. +.+  ..+.+||+.+++....+.
T Consensus       393 ~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~  451 (719)
T 1z68_A          393 SYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE  451 (719)
T ss_dssp             SSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred             CCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence             421 1221   22366778899999999877753 333  468999999887654443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=6.7e-20  Score=219.77  Aligned_cols=272  Identities=12%  Similarity=0.074  Sum_probs=198.0

Q ss_pred             CCCceEEeecCCCceEEEEEcC-CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC-CcEEEEEECCCCCEE
Q 001362          334 SSSPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLL  411 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~-d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~l  411 (1092)
                      ..+|++++|||||++ ||+++. ||++.||++.+++...                    +..|. ..|..++|||| +++
T Consensus        21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l   78 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI   78 (582)
T ss_dssp             HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred             ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence            447999999999995 566555 9999999997665443                    44455 68999999999 777


Q ss_pred             EEEeC---CCEEEEEEccC--CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001362          412 GVAYS---KHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1092)
Q Consensus       412 as~~~---d~~i~iwd~~~--~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  486 (1092)
                      ++++.   +....+|.+..  .....   .+..+. .+...+|+|||+.+++++++.++ +.+||+++++.......+. 
T Consensus        79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~-  152 (582)
T 3o4h_A           79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG-  152 (582)
T ss_dssp             EEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS-
T ss_pred             EEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC-
Confidence            77765   44566666543  22111   232222 34467999999875666666555 4599999987765554333 


Q ss_pred             CeEEEeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001362          487 PVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                        .+++|+  +||++|++++.+    +.|++||+.+++.. .+..+...+..++|||||+.|+++..  ++...|++||.
T Consensus       153 --~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~  225 (582)
T 3o4h_A          153 --FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP  225 (582)
T ss_dssp             --CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred             --ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence              666774  578899988877    78999999887655 55667778899999999999995443  33458999999


Q ss_pred             CCCeEEEEEeeccccCCceEEEE--------EcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001362          563 SEGAIKRTYQGLQLQHNSVSVVH--------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~--------~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      .+++.. .+.++.   ..+..++        |+|||..+++++.++++++|++  ++....   .  ...+.+++|+ ++
T Consensus       226 ~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg  293 (582)
T 3o4h_A          226 RDGSVE-DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RG  293 (582)
T ss_dssp             TTCCEE-ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TT
T ss_pred             CCCcEE-EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CC
Confidence            999887 666554   4555556        9999988888999999999999  665441   1  1347789999 99


Q ss_pred             CEEEEEeCCCe---EEEEECC
Q 001362          635 TLLAVIANENR---IKILETP  652 (1092)
Q Consensus       635 ~~l~~~~~dg~---i~iw~~~  652 (1092)
                      +++++++.+..   +.+|+..
T Consensus       294 ~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          294 KLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEEEEEEETTEEEEEEEETTC
T ss_pred             EEEEEEcCCCCCCeEEEEcCC
Confidence            99988887644   5666554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=1.5e-19  Score=196.28  Aligned_cols=245  Identities=11%  Similarity=0.069  Sum_probs=181.5

Q ss_pred             cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCC-CCcEEE
Q 001362          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNR  401 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h-~~~V~~  401 (1092)
                      ......+..|...|.+++|+|||+ +|++++ ++.|.+||+.+ ++....                   ..+| ...|.+
T Consensus        31 ~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~~~~~~~~~   89 (297)
T 2ojh_A           31 TRKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV-------------------DTGFATICNND   89 (297)
T ss_dssp             TTEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC-------------------CCTTCCCBCSC
T ss_pred             CCceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe-------------------ccccccccccc
Confidence            334455667888999999999999 466665 78999999998 776542                   3334 478899


Q ss_pred             EEECCCCCEEEEEe--CCCEEEEEEc--cCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC-CCc
Q 001362          402 VVWSPDGSLLGVAY--SKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGS  476 (1092)
Q Consensus       402 l~~spdg~~las~~--~d~~i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~  476 (1092)
                      ++|+|||++|++++  .++.+.||.+  .++. ..   .+..+. .+.+++|+||++. ++++++.|+.++||++. .+.
T Consensus        90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~-~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~  163 (297)
T 2ojh_A           90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKNL-PSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSG  163 (297)
T ss_dssp             CEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSSS-SEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTC
T ss_pred             eEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecCC-CccceEECCCCCE-EEEEECCCCceEEEEEECCCC
Confidence            99999999999998  3344555554  4543 22   333333 4889999999994 34478889999999853 233


Q ss_pred             eeEEEecCCcCeEEEeecccCCccEEEEEe-cCCeEEEEEcC-CCCceEEecCCCCceEEEEEccCCCEEEEEecCCC--
Q 001362          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--  552 (1092)
Q Consensus       477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~--  552 (1092)
                      ....+..+...+.+++|++  ++.+|+.++ .++.+++|+++ .......+..+...+..++|+|+|++|++++.++.  
T Consensus       164 ~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  241 (297)
T 2ojh_A          164 VETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVF  241 (297)
T ss_dssp             CEEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred             cceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence            4456667888899999955  667777665 59999999987 45556667767778899999999999998876432  


Q ss_pred             -----CceeEEEEeCCCCeEEEE--EeeccccCCceEEEEEcCCCCEEEEEeCCC
Q 001362          553 -----GESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAAGDDH  600 (1092)
Q Consensus       553 -----~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg  600 (1092)
                           ....|++||+.+++....  +.++.   ..+..++|+|++++|++++.+.
T Consensus       242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQ---GTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SCCSSEEEEEEEEETTSCSCEEEEEEEEST---TTSCSCCBCTTSSEEEEEEECC
T ss_pred             cccccCceEEEEEecCCCCceeeeccCCCC---cccccceECCCCCEEEEEEecc
Confidence                 246799999998866443  33555   6788899999999998877543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=1.7e-18  Score=192.85  Aligned_cols=249  Identities=12%  Similarity=0.151  Sum_probs=170.1

Q ss_pred             CCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCce--eeEEecCCCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEEcC
Q 001362          801 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR  874 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~  874 (1092)
                      +...+..++|+|||+++++..   ++.|.+|++.+++  .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus        38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence            345667899999999444443   3789999998765  4444455677889999999 888888887 78999999996


Q ss_pred             C-c--eeeEeecc---------ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCceeeeeeeecCCCCcCCCCCceE
Q 001362          875 S-S--EVISKLEG---------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH  941 (1092)
Q Consensus       875 ~-~--~~~~~l~~---------h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~  941 (1092)
                      . +  +.+..+..         +...+.+++|+|||+++++...++.|.+|++. +++...........+     ..+..
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~  191 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH  191 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence            3 3  23333321         12348899999999977777778899999998 444332222222222     24678


Q ss_pred             EEEecCCCEEEEE--eCCcEEEEEcCC--ceeeee-eccCC------CCCEEEEEEecCCCEEE-EEECCCcEEEEEcCC
Q 001362          942 IQFHKDQTRFLLV--HETHLAIYEAEE--LTCLKQ-WFPIS------SVPISQATFSCDCRMVF-TSFVDGTLSIHEASN 1009 (1092)
Q Consensus       942 l~~s~dg~~la~~--~d~~i~lwd~~~--~~~~~~-~~~~h------~~~v~~l~fs~dg~~l~-t~~~Dg~i~vwd~~~ 1009 (1092)
                      ++|+|||++++++  .++.+.+|++..  ++.... .....      ...+..++|+|||++|+ +...++.|.+|++..
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            9999999977774  467899999874  443211 11111      14588999999999874 555689999999973


Q ss_pred             C---ceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCC-CcEEEEeCCCCCCc
Q 001362         1010 L---EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDT 1066 (1092)
Q Consensus      1010 ~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d-g~v~~w~~~~~~~~ 1066 (1092)
                      .   ..+..+.      ..  .  -.+..++|+| |+++|++++.+ +.|.+|++....++
T Consensus       272 ~g~~~~~~~~~------~~--~--~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          272 DGHLTLIQQIS------TE--G--DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK  321 (347)
T ss_dssp             GGCEEEEEEEE------CS--S--SCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             CCcEEEeEEEe------cC--C--CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence            3   2222222      10  1  2345789999 57877777764 89999977544433

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=5.6e-20  Score=226.82  Aligned_cols=279  Identities=14%  Similarity=0.078  Sum_probs=197.3

Q ss_pred             eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC---cEEEEEECCCCCEEEEE
Q 001362          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       338 ~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~~las~  414 (1092)
                      ..++|+|||+ +++++ .|++|++||+.+++....                   +.+|..   .|.+++|||||++||++
T Consensus        19 ~~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~   77 (719)
T 1z68_A           19 FFPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLE   77 (719)
T ss_dssp             CCCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred             CccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEE
Confidence            3789999996 66665 589999999999986643                   223332   48899999999999998


Q ss_pred             eC---------CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecC
Q 001362          415 YS---------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH  484 (1092)
Q Consensus       415 ~~---------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~  484 (1092)
                      +.         ++.|++||+.+++.+... .+   ...+..++|||||+  .|+.+. ++.|++||+.+++..+.. .++
T Consensus        78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~  150 (719)
T 1z68_A           78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGR  150 (719)
T ss_dssp             EEEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred             ecCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence            76         689999999998652100 12   24688999999999  566665 789999999988765432 233


Q ss_pred             CcCe-----------------EEEeecccCCccEEEEEecCC----------------------------------eEEE
Q 001362          485 GAPV-----------------YSLCPHAKENIHFIFSISVDG----------------------------------KIKA  513 (1092)
Q Consensus       485 ~~~v-----------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~v  513 (1092)
                      ...|                 .+++|  ++||++|++++.|.                                  .|++
T Consensus       151 ~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~  228 (719)
T 1z68_A          151 ENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI  228 (719)
T ss_dssp             TTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             cCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence            2222                 36777  55888999988652                                  7889


Q ss_pred             EEcCCCCce--EE------ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe----CCCCeEEEEE----eecccc
Q 001362          514 WLYDSLGAR--VD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN----ESEGAIKRTY----QGLQLQ  577 (1092)
Q Consensus       514 wd~~~~~~~--~~------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~  577 (1092)
                      ||+.++...  ..      +..+...+..++|+||++.+++..........|++||    ..+++....+    .++.  
T Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~--  306 (719)
T 1z68_A          229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT--  306 (719)
T ss_dssp             EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS--
T ss_pred             EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC--
Confidence            999876642  11      2346667899999999887776544334456799999    8888776555    2443  


Q ss_pred             CCceE-----EEEEcCCCCEEEE--EeCCC--cEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-----
Q 001362          578 HNSVS-----VVHFDTAKDQILA--AGDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----  643 (1092)
Q Consensus       578 ~~~v~-----~~~~~p~~~~l~~--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----  643 (1092)
                       ..+.     .+.|+|+|+.++.  ...+|  .|++||+.+++. ..+..+  ...+..+.++ +++.++..+.+     
T Consensus       307 -~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~  381 (719)
T 1z68_A          307 -GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYP  381 (719)
T ss_dssp             -SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred             -ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccC--ceEEEEEEEE-eCCEEEEEEecCCCCC
Confidence             4454     7889999997655  33555  577778877763 334322  2335667777 88887777765     


Q ss_pred             CeEEEEECCC
Q 001362          644 NRIKILETPE  653 (1092)
Q Consensus       644 g~i~iw~~~~  653 (1092)
                      +..++|.+..
T Consensus       382 ~~~~l~~~~~  391 (719)
T 1z68_A          382 GRRNIYRISI  391 (719)
T ss_dssp             TCBEEEEEEC
T ss_pred             ceEEEEEEeC
Confidence            7888887754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=9.3e-19  Score=194.89  Aligned_cols=277  Identities=12%  Similarity=0.098  Sum_probs=182.8

Q ss_pred             ccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeec---CCeeEEEeecCCCcCcCcccccccCCccc
Q 001362          707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS---NGVHLMWRWPRNDLTLSTEATTKVPPRLY  783 (1092)
Q Consensus       707 d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~---dg~i~lw~~~~~~~~~~~~~~~~~~~~~w  783 (1092)
                      ++.+.+|.++..... ...+.  ...+...+..++|+|+|+ +++++.   ++.+.+|++.....               
T Consensus        15 ~~~i~v~~~d~~tg~-~~~~~--~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~---------------   75 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKT-LTNDG--LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA---------------   75 (347)
T ss_dssp             CCEEEEEEEETTTTE-EEEEE--EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE---------------
T ss_pred             CCCEEEEEEcCCCCe-EEEee--eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE---------------
Confidence            456778877642211 11111  112345667899999999 666654   58999998754321               


Q ss_pred             cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcC-C--ceeeEEecCC---------CCCeEEE
Q 001362          784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVM-T--FKTILTIMPP---------SPTATSL  849 (1092)
Q Consensus       784 ~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~-~--~~~~~~~~~~---------~~~i~~l  849 (1092)
                             .....+.  .+...+..++|+|||++|++++  ++.+.+|++. +  .+.+..+...         ...+.++
T Consensus        76 -------~~~~~~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  146 (347)
T 3hfq_A           76 -------HKLNTVV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYT  146 (347)
T ss_dssp             -------EEEEEEE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEE
T ss_pred             -------EEeeeee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEE
Confidence                   0000000  1455678999999999988887  5889999996 2  3333333221         2348899


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEEcC-Cceee--Eeeccc-cCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCC--Cceee
Q 001362          850 AFNPHDNNVIAIGMDDSTILIYNAR-SSEVI--SKLEGH-SKRVTGLVFSDALNILVS-SGGDAQIFVWDVDG--WGIQT  922 (1092)
Q Consensus       850 ~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~--~~l~~h-~~~V~~l~~spdg~~l~s-~s~Dg~i~iwd~~~--~~~~~  922 (1092)
                      +|+| +++++++...++.|++|++. +++..  ..+..+ ...+..++|+|||++|++ ...++.|.+|++..  ++...
T Consensus       147 ~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~  225 (347)
T 3hfq_A          147 DLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ  225 (347)
T ss_dssp             EECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             EECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence            9999 77777777778999999998 55432  222222 236788999999996665 56788999999885  44332


Q ss_pred             eeeeecCCCCcCCCCCceEEEEecCCCEEEE-E-eCCcEEEEEcCC-c--eeeeeeccCCCCCEEEEEEecCCCEEEEEE
Q 001362          923 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEE-L--TCLKQWFPISSVPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       923 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~d~~i~lwd~~~-~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~  997 (1092)
                      ...+............+..++|+|||++|++ . .++.|.+|++.. +  +.+.. ...+...+..++|+|||++|++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~  304 (347)
T 3hfq_A          226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ-ISTEGDFPRDFDLDPTEAFVVVVN  304 (347)
T ss_dssp             EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE-EECSSSCCCEEEECTTSSEEEEEE
T ss_pred             eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE-EecCCCCcCeEEECCCCCEEEEEE
Confidence            2233332221111124788999999998865 3 478999999973 2  33333 334566788999999999998887


Q ss_pred             CC-CcEEEE--EcCCCceE
Q 001362          998 VD-GTLSIH--EASNLEVQ 1013 (1092)
Q Consensus       998 ~D-g~i~vw--d~~~~~~~ 1013 (1092)
                      .+ +.|.+|  |..+|++.
T Consensus       305 ~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          305 QNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             TTTTEEEEEEECTTTCCEE
T ss_pred             cCCCcEEEEEEeCCCCeEE
Confidence            65 899999  55567665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.84  E-value=5.7e-19  Score=200.16  Aligned_cols=309  Identities=10%  Similarity=0.016  Sum_probs=203.2

Q ss_pred             cccCCCcceeeecccCCCCceE-----EeecCCCceEEEEEcCCC--cEEEEecCCCCeeEEeeeeeeecccccceeeEe
Q 001362          318 SFSDFPKTVAQTLIEGSSSPMS-----MDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA  390 (1092)
Q Consensus       318 ~~~~~p~~~~~~l~~h~~~V~~-----v~~spdg~~llasg~~d~--~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~  390 (1092)
                      +++.........|..|...+..     .+|||||++++.++..++  .|.+||+.+++....                  
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------------   75 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------------   75 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------------
T ss_pred             EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------------
Confidence            3444445667778888766666     899999996555544466  488889998876542                  


Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEE--EEecCCCcEEEEE--------
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL--AFSAPCKQISVIT--------  460 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~--~~s~d~~~l~l~s--------  460 (1092)
                       ..+|...+..++|||||++|++++.++.|++||+.+++...   ....+...+...  .+++|++  .++.        
T Consensus        76 -t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~  149 (388)
T 3pe7_A           76 -TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDW  149 (388)
T ss_dssp             -CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGC
T ss_pred             -eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCccc
Confidence             34455555578899999999999999999999999986443   233444444333  3489998  4542        


Q ss_pred             --------------EeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC------CeEEEEEcCCCC
Q 001362          461 --------------CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLG  520 (1092)
Q Consensus       461 --------------~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~  520 (1092)
                                    .+.+..|.+||+.+++.. .+..+...+..+.|+|. |+..|+..+.+      ..|.++|.....
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~  227 (388)
T 3pe7_A          150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTN  227 (388)
T ss_dssp             CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred             ccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence                          224578999999998754 44456677888888541 66778777653      367777776654


Q ss_pred             ceEEecCCC-CceEEEEEccCCCEEEEEecCC-CCceeEEEEeCCCCeEEEE--EeeccccCCceEEEEEcCCCCEEEEE
Q 001362          521 ARVDYDAPG-LGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAA  596 (1092)
Q Consensus       521 ~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l~~~  596 (1092)
                      ......... ..+..++|+|||+.|+..+... .....|++||+.+++....  +.++...........|+|+|+.++..
T Consensus       228 ~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~  307 (388)
T 3pe7_A          228 MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD  307 (388)
T ss_dssp             CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred             eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence            443333222 3577889999999887665432 2234599999999875432  22210000001123689999988754


Q ss_pred             ---------eCCCcEEEEECCCCceEEEEeCCCCCC--------CCceEEEccCCCEEEEEeC-CCeEEEEECC
Q 001362          597 ---------GDDHVIKIWDMNKVQLLTTIDAGGGLP--------ENPRICFNKNGTLLAVIAN-ENRIKILETP  652 (1092)
Q Consensus       597 ---------s~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~  652 (1092)
                               ..+..|++||+.+++............        .+..++|+|||+.|+..+. +|...||.+.
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          308 VQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             ---------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             eeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence                     456789999999887644433322100        3678899999998887765 5666666543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=7.5e-19  Score=216.33  Aligned_cols=278  Identities=14%  Similarity=0.120  Sum_probs=186.7

Q ss_pred             CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC-----cEEEEEECCCCC
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGS  409 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~-----~V~~l~~spdg~  409 (1092)
                      .....++|+|||+ +++++  |++|++||+.+|+....                   +.+|..     ....++|||||+
T Consensus        17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~   74 (740)
T 4a5s_A           17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQ   74 (740)
T ss_dssp             CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSS
T ss_pred             ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCC
Confidence            3567899999997 67776  89999999999986543                   444543     234488999999


Q ss_pred             EEEEEeCC---------CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001362          410 LLGVAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       410 ~las~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      +|++++.+         +.+.+||+.+++...    +..|.+.+...+|||||+  .|+.+. |+.|++||+.+++..+.
T Consensus        75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~l  147 (740)
T 4a5s_A           75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRI  147 (740)
T ss_dssp             EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEEC
T ss_pred             EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEE
Confidence            99999876         567799999986443    567788899999999999  466654 78999999988875542


Q ss_pred             -EecCCcCe-----------------EEEeecccCCccEEEEEecCCe-EEEEEcCCCCceEEecCCCCceEEEEEccCC
Q 001362          481 -FEGHGAPV-----------------YSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANG  541 (1092)
Q Consensus       481 -~~~~~~~v-----------------~~~~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg  541 (1092)
                       ..++...+                 ..+.|  ++||+.|+.++.|.+ +.+|++.......   .+...+..+.+.+.|
T Consensus       148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG  222 (740)
T ss_dssp             CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred             cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence             22332222                 23566  568889998876655 8888764321110   123355667777766


Q ss_pred             CEEEEEecCCCCceeEEEEeCCC---C---eEEEEEeecc---ccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECC
Q 001362          542 RRLFSCGTSKEGESFLVEWNESE---G---AIKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMN  608 (1092)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~---~---~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~s----~dg~i~iwd~~  608 (1092)
                      ..        .....|++||+.+   +   +... +....   .+...+..++|+||++.++...    .+..|++||+.
T Consensus       223 ~~--------~~~~~l~v~d~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~  293 (740)
T 4a5s_A          223 AV--------NPTVKFFVVNTDSLSSVTNATSIQ-ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD  293 (740)
T ss_dssp             SC--------CCEEEEEEEETTSCCSSSCCCEEE-ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred             Cc--------CCeeEEEEEECCCCCCCCcceEEE-ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC
Confidence            43        1244699999998   7   3332 32200   1236789999999998666543    23479999999


Q ss_pred             CCc----eE--EEE--eCCCCCCC---CceEEEccCCCEEE-EEeC-C--CeEEEEECCCCc
Q 001362          609 KVQ----LL--TTI--DAGGGLPE---NPRICFNKNGTLLA-VIAN-E--NRIKILETPESN  655 (1092)
Q Consensus       609 ~~~----~~--~~~--~~~~~~~~---v~~v~~s~~~~~l~-~~~~-d--g~i~iw~~~~~~  655 (1092)
                      +++    +.  ..+  ..+.....   ...++|+|||+.++ ..+. +  ..|++|+..++.
T Consensus       294 tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          294 ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence            887    21  111  22221111   23789999999887 6654 3  457777776553

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=3.5e-17  Score=183.23  Aligned_cols=312  Identities=10%  Similarity=0.091  Sum_probs=195.8

Q ss_pred             cCCCEEEEEecCCCCceeEEEEeC--CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCC--C
Q 001362          539 ANGRRLFSCGTSKEGESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNK--V  610 (1092)
Q Consensus       539 ~dg~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~d----g~i~iwd~~~--~  610 (1092)
                      +...++++++.....+..|++|.+  .+++.......+   ...+..++|+|++++|++++.+    +.|.+|++..  +
T Consensus        11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~---~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g   87 (361)
T 3scy_A           11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE---VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG   87 (361)
T ss_dssp             GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE---CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred             CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc---CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence            344556666544334556777754  567654443333   3677889999999999998876    7999998765  4


Q ss_pred             ceEEEEeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCcee
Q 001362          611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS  689 (1092)
Q Consensus       611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  689 (1092)
                      +................+++  +++++++++ .++.+.+|++.....+.....                           
T Consensus        88 ~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~---------------------------  138 (361)
T 3scy_A           88 TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD---------------------------  138 (361)
T ss_dssp             EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE---------------------------
T ss_pred             cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce---------------------------
Confidence            43222221111223456666  788777776 578899999864322111000                           


Q ss_pred             ecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcC
Q 001362          690 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT  769 (1092)
Q Consensus       690 ~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~  769 (1092)
                                                                       .+.....+.                      
T Consensus       139 -------------------------------------------------~~~~~g~~~----------------------  147 (361)
T 3scy_A          139 -------------------------------------------------VIEFKGSGP----------------------  147 (361)
T ss_dssp             -------------------------------------------------EEECCCCCS----------------------
T ss_pred             -------------------------------------------------eEEccCCCC----------------------
Confidence                                                             000000000                      


Q ss_pred             cCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCce-------e-----
Q 001362          770 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK-------T-----  835 (1092)
Q Consensus       770 ~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~-------~-----  835 (1092)
                                      .          +...+...+.+++|+|||+++++++  ++.+.+|++....       .     
T Consensus       148 ----------------~----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          148 ----------------D----------KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             ----------------C----------TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             ----------------C----------ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence                            0          0001233467788888888776665  5788888876433       1     


Q ss_pred             -eEEecCCCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEEcCCcee--eEee---ccccCCeEEEEEcCCCCEEEEEeCC-
Q 001362          836 -ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV--ISKL---EGHSKRVTGLVFSDALNILVSSGGD-  907 (1092)
Q Consensus       836 -~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~--~~~l---~~h~~~V~~l~~spdg~~l~s~s~D-  907 (1092)
                       ......+......++|+| |++++++++ .++.|.+|++.+++.  +..+   ..+...+..++|+|||++|+++..+ 
T Consensus       202 ~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~  280 (361)
T 3scy_A          202 PEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK  280 (361)
T ss_dssp             EEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred             ccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence             112233455678999999 888887777 689999999987754  2222   3344567899999999998766654 


Q ss_pred             -CcEEEEEcC--CCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCCcEEEEEc--CCceeeeeeccCCCCC
Q 001362          908 -AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEA--EELTCLKQWFPISSVP  980 (1092)
Q Consensus       908 -g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~i~lwd~--~~~~~~~~~~~~h~~~  980 (1092)
                       +.|.+|++.  +++......+..  +     ..+..++|+|||++|+++  .++.|.+|++  .+++........+...
T Consensus       281 ~~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~  353 (361)
T 3scy_A          281 ADGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDK  353 (361)
T ss_dssp             SCEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSS
T ss_pred             CCEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCC
Confidence             889999996  344322222222  1     247799999999998885  4678999655  5676654432335567


Q ss_pred             EEEEEEe
Q 001362          981 ISQATFS  987 (1092)
Q Consensus       981 v~~l~fs  987 (1092)
                      +.|+.|.
T Consensus       354 p~~v~~~  360 (361)
T 3scy_A          354 PVCLKFV  360 (361)
T ss_dssp             EEEEEEE
T ss_pred             CeEEEEc
Confidence            8999886

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=1.5e-17  Score=186.28  Aligned_cols=301  Identities=13%  Similarity=0.107  Sum_probs=196.9

Q ss_pred             ecCCCceEEEEEc----CCCcEEEEec--CCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001362          342 FHPVQHTLLLVGT----NVGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       342 ~spdg~~llasg~----~d~~v~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      ..+... .+..|+    .++.|.+|++  .+|+.....                  .. +...+..++|+|||++|++++
T Consensus         9 ~~~~~~-~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~~~   68 (361)
T 3scy_A            9 TTDSEL-TMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYSVN   68 (361)
T ss_dssp             GGGGEE-EEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEEEE
T ss_pred             hCCCce-EEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEEEE
Confidence            344443 455664    3567888876  455544320                  11 567788899999999999998


Q ss_pred             CC----CEEEEEEccCC-CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE---ecC---
Q 001362          416 SK----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---EGH---  484 (1092)
Q Consensus       416 ~d----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~---~~~---  484 (1092)
                      .+    +.|.+|++... ..+........+......+++  +++. ++++...++.|.+|++.+...+..+   ..+   
T Consensus        69 ~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~  145 (361)
T 3scy_A           69 EFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGS  145 (361)
T ss_dssp             CCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred             ccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence            75    79999998763 223333334445556777777  7773 3444457889999999754333211   111   


Q ss_pred             --------CcCeEEEeecccCCccEEEEEe-cCCeEEEEEcCCCCc------e-------EEecCCCCceEEEEEccCCC
Q 001362          485 --------GAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA------R-------VDYDAPGLGCTRMAYSANGR  542 (1092)
Q Consensus       485 --------~~~v~~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~------~-------~~~~~~~~~i~~~~~s~dg~  542 (1092)
                              ...+.+++|+  ++++++++++ .++.|++|+++....      .       ............++|+|||+
T Consensus       146 ~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~  223 (361)
T 3scy_A          146 GPDKERQTMPHLHCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK  223 (361)
T ss_dssp             CSCTTTCSSCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             CCCccccCCCcceEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC
Confidence                    2234678885  4777665544 589999999886542      1       22233445678999999999


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCC--CcEEEEECC--CCc--eEE
Q 001362          543 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--HVIKIWDMN--KVQ--LLT  614 (1092)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~d--g~i~iwd~~--~~~--~~~  614 (1092)
                      +++++..   .++.|.+|++.+++..  ..+.....+......++|+|++++++++..+  +.|.+|++.  +++  .+.
T Consensus       224 ~l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~  300 (361)
T 3scy_A          224 FAYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVG  300 (361)
T ss_dssp             EEEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEE
T ss_pred             EEEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEee
Confidence            8887763   2567999999877653  3333322222456899999999999776654  899999985  455  344


Q ss_pred             EEeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECC--CCceeeec-ccccCceeeeeec
Q 001362          615 TIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETP--ESNSVDAA-GVLSDNLRKLSVN  673 (1092)
Q Consensus       615 ~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~--~~~~~~~~-~~~~~~v~~~~~~  673 (1092)
                      .+..   ...+..++|+|+|++|++++ .++.|.+|++.  +++..... ..+.....|+.|.
T Consensus       301 ~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          301 YQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            4443   23478999999999998887 57999996554  55544433 2233455555553

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=4.1e-18  Score=189.86  Aligned_cols=283  Identities=11%  Similarity=0.060  Sum_probs=194.6

Q ss_pred             eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-eC
Q 001362          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YS  416 (1092)
Q Consensus       338 ~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~  416 (1092)
                      +.++++++++ ++++++.+++|.+||+.+++.+.....                  +....+..++|+|||++++++ ..
T Consensus         3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~s~dg~~~~v~~~~   63 (349)
T 1jmx_B            3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVM------------------PDKFGPGTAMMAPDNRTAYVLNNH   63 (349)
T ss_dssp             -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEEC------------------SSCCSSCEEEECTTSSEEEEEETT
T ss_pred             ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEec------------------CCCCCCceeEECCCCCEEEEEeCC
Confidence            3567888887 788999999999999999887654211                  122257889999999976554 56


Q ss_pred             CCEEEEEEccCCCcccceEEEc-cc-----ccceeEEEEecCCCcEEEEEEeCC------------CcEEEEECCCCce-
Q 001362          417 KHIVQLYAYHGGSDARQQLEID-AH-----VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSR-  477 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~~~-~h-----~~~v~~~~~s~d~~~l~l~s~~~d------------~~i~vwd~~~~~~-  477 (1092)
                      ++.|.+||+.+++...   .+. .+     ...+.+++|+|||+  ++++++.+            +.|.+||+.+++. 
T Consensus        64 ~~~i~~~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  138 (349)
T 1jmx_B           64 YGDIYGIDLDTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  138 (349)
T ss_dssp             TTEEEEEETTTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             CCcEEEEeCCCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence            8899999999886544   232 22     23478999999999  56666644            8999999998543 


Q ss_pred             --eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC------------------------c
Q 001362          478 --TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL------------------------G  531 (1092)
Q Consensus       478 --~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------------------------~  531 (1092)
                        +..+. +...+.+++|++  +++ +++++  +.|.+||..+++....+.....                        .
T Consensus       139 ~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (349)
T 1jmx_B          139 KPVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM  212 (349)
T ss_dssp             CCSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred             ceeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence              34444 334577888854  666 55543  3499999988876665543320                        2


Q ss_pred             eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE-EeeccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 001362          532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNK  609 (1092)
Q Consensus       532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~p-~~~~l~~~s~dg~i~iwd~~~  609 (1092)
                      ...+++++++........   ....+..+|..+++.... +...   ...+..++|+| ++++++++  ++.|.+||+.+
T Consensus       213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~  284 (349)
T 1jmx_B          213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADL---TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ  284 (349)
T ss_dssp             EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEEC---SSCEEEEEECSSCTTEEEEE--ESEEEEEETTT
T ss_pred             eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccC---CCcceeeEecCCCCCEEEEE--cCeEEEEECcc
Confidence            344566655432211110   011233366666553221 1122   35788999999 99999888  88999999999


Q ss_pred             CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001362          610 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       610 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                      ++.+..+....   .+..++|+|+|++|++++.++.|.+||..+++.+..+.
T Consensus       285 ~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          285 RKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             TEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            99888887543   36789999999999988889999999999887776654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.82  E-value=2.8e-19  Score=203.79  Aligned_cols=271  Identities=13%  Similarity=0.095  Sum_probs=188.2

Q ss_pred             CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce----------eeEE-----ecCCCCCeEEEEEcCCCCCEEE----EE
Q 001362          802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFK----------TILT-----IMPPSPTATSLAFNPHDNNVIA----IG  862 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~----------~~~~-----~~~~~~~i~~l~~s~~d~~~la----sg  862 (1092)
                      ...+..+++++++.++++++.+.+++|+.....          .+..     ...+...|.+++|+| ++++||    +|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEecc
Confidence            345788999999999999986559998764211          0111     112456799999999 899999    78


Q ss_pred             eCCCcEEEEEcCCc--------e---eeEeeccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001362          863 MDDSTILIYNARSS--------E---VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD  930 (1092)
Q Consensus       863 ~~dg~v~iwd~~~~--------~---~~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~  930 (1092)
                      +.|+.|+|||+.++        +   .+..+.+|...|.+++|+|+ +++|++++.||+|++||+.++..     .....
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-----~~~~~  189 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-----VCATL  189 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-----EEEEE
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-----eeecc
Confidence            89999999999765        2   24667789999999999998 89999999999999999998632     11122


Q ss_pred             CCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeecc------CCCCCEEEEEEecCCCEEEEE-ECCCc-
Q 001362          931 GVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTS-FVDGT- 1001 (1092)
Q Consensus       931 ~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~-~~Dg~- 1001 (1092)
                      +|..   .|.+++|+|+|++|++ +.|++|++||.. ++....+..      .|...|.+++|++++.++++. +.||. 
T Consensus       190 ~~~~---~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~  265 (434)
T 2oit_A          190 PSTV---AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL  265 (434)
T ss_dssp             CGGG---CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred             CCCC---ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence            2332   6999999999999999 578999999998 444433211      234489999999999887653 34433 


Q ss_pred             -----EEEEEcCCCce-----EEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeC-CCcEEEEeCCCCCCccccC
Q 001362         1002 -----LSIHEASNLEV-----QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT-NGEVYVIEPNEPGDTWAVL 1070 (1092)
Q Consensus      1002 -----i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~-dg~v~~w~~~~~~~~~~~~ 1070 (1092)
                           +++|++.....     ...+....+....   .....+.+.+-++ .+++++++. .+.|.+......++.|...
T Consensus       266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~l~d-w~l~~v~s~~s~dv~vl~~~~~~~~~~~~  341 (434)
T 2oit_A          266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCT---ERQHHYYLSYIEE-WDLVLAASAASTEVSILARQSDQINWESW  341 (434)
T ss_dssp             SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCS---SSCCCEEEEEEGG-GTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred             CCCCceEEEEeccCCCCCCcceEecccCCCCCCC---CcCcceeeehhcc-CCEEEEecCCCCceeEEEecCCCCccEEE
Confidence                 89999986532     1122111111111   1111123444453 455555554 5678999887777778887


Q ss_pred             CCCCcccCCCCCCccc
Q 001362         1071 PPDEIVGDQPTSTSEG 1086 (1092)
Q Consensus      1071 ~~~~~~~~~~~~~~~~ 1086 (1092)
                      ...|..+++.+.+.++
T Consensus       342 ~~~d~~ra~lP~~~~~  357 (434)
T 2oit_A          342 LLEDSSRAELPVTDKS  357 (434)
T ss_dssp             EECGGGCCBCCBCTTS
T ss_pred             eccccccccccCCCCC
Confidence            7778777777766553

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=7.7e-18  Score=207.33  Aligned_cols=379  Identities=12%  Similarity=0.034  Sum_probs=241.3

Q ss_pred             eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce--EEEEEcCCCCEEEEEeCC---------C
Q 001362          532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGDD---------H  600 (1092)
Q Consensus       532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~p~~~~l~~~s~d---------g  600 (1092)
                      ..++.|+|||++++++      ++.|++||..+++....+.++......+  ..+.|+|||++|+.++.+         +
T Consensus        19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            4578999999988875      3469999999999888888776222223  348899999999998876         5


Q ss_pred             cEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc-cccCceeeeeecCCCccc
Q 001362          601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVT  679 (1092)
Q Consensus       601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~  679 (1092)
                      .+.+||+.+++... +..  +...+..++|||||+.||.+. ++.|++|+..++...+... ++...             
T Consensus        93 ~~~~~d~~~~~~~~-l~~--~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~-------------  155 (740)
T 4a5s_A           93 SYDIYDLNKRQLIT-EER--IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI-------------  155 (740)
T ss_dssp             EEEEEETTTTEECC-SSC--CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------
T ss_pred             EEEEEECCCCcEEE-ccc--CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc-------------
Confidence            67799999987643 322  234578999999999999885 5899999998775433211 10000             


Q ss_pred             cccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-Cee
Q 001362          680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVH  758 (1092)
Q Consensus       680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i  758 (1092)
                                           +..+..   --+|.-+                -......+.|||||+.|+.+..| +.+
T Consensus       156 ---------------------~~~g~~---~~v~~ee----------------~~~~~~~~~wSpDg~~la~~~~d~~~v  195 (740)
T 4a5s_A          156 ---------------------IYNGIT---DWVYEEE----------------VFSAYSALWWSPNGTFLAYAQFNDTEV  195 (740)
T ss_dssp             ---------------------EEESBC---CHHHHHH----------------TSSSSBCEEECTTSSEEEEEEEECTTC
T ss_pred             ---------------------eecCcc---cccccch----------------hcCCCcceEECCCCCEEEEEEEcccCC
Confidence                                 000000   0000000                01223457999999999988766 458


Q ss_pred             EEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCC---ce-
Q 001362          759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT---FK-  834 (1092)
Q Consensus       759 ~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~---~~-  834 (1092)
                      .+|++.....                 ..            .+...+..+.+.+.|..-   ...+|++||+.+   ++ 
T Consensus       196 ~~~~~~~~~~-----------------~~------------~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~~~~~~  243 (740)
T 4a5s_A          196 PLIEYSFYSD-----------------ES------------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTN  243 (740)
T ss_dssp             CEEEEEECCS-----------------TT------------CSSCEEEEEECCBTTSCC---CEEEEEEEETTSCCSSSC
T ss_pred             ceEEEEeecC-----------------CC------------CCCCcceeecCCCCcCcC---CeeEEEEEECCCCCCCCc
Confidence            8887653210                 00            133445666777666421   123689999998   73 


Q ss_pred             -eeEEec------CCCCCeEEEEEcCCCCCEEEEEeC----CCcEEEEEcCCce----ee--Eee--ccccCCeE-----
Q 001362          835 -TILTIM------PPSPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSE----VI--SKL--EGHSKRVT-----  890 (1092)
Q Consensus       835 -~~~~~~------~~~~~i~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~----~~--~~l--~~h~~~V~-----  890 (1092)
                       ....+.      ++...+..++|+| |+++++....    +..|++||+.+++    +.  ..+  .+|...|.     
T Consensus       244 ~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~  322 (740)
T 4a5s_A          244 ATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS  322 (740)
T ss_dssp             CCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred             ceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCC
Confidence             233343      2677899999999 8887666543    3379999999987    32  222  44665554     


Q ss_pred             EEEEcCCCCEEE-EEeC-C--CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeC-----C--c
Q 001362          891 GLVFSDALNILV-SSGG-D--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----T--H  958 (1092)
Q Consensus       891 ~l~~spdg~~l~-s~s~-D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d-----~--~  958 (1092)
                      .++|||||+.|+ ..+. +  ..|.+||+.+++..     +...+..    .+..+. ++|++.|+. +..     +  .
T Consensus       323 ~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~~----~v~~~~-~~d~~~i~f~~~~~~~~~~~~~  392 (740)
T 4a5s_A          323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGTW----EVIGIE-ALTSDYLYYISNEYKGMPGGRN  392 (740)
T ss_dssp             CCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSSS----CEEEEE-EECSSEEEEEESCGGGCTTCBE
T ss_pred             CceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCCE----EEEEEE-EEeCCEEEEEEecCCCCCceeE
Confidence            789999999887 6654 3  46888898875522     2223322    244443 355777765 432     2  3


Q ss_pred             EEEEEcCCceeeeeec---cCCCCCEEEEEEecCCCEEEEEECC---CcEEEEEcCCCceEEee
Q 001362          959 LAIYEAEELTCLKQWF---PISSVPISQATFSCDCRMVFTSFVD---GTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       959 i~lwd~~~~~~~~~~~---~~h~~~v~~l~fs~dg~~l~t~~~D---g~i~vwd~~~~~~~~~~ 1016 (1092)
                      |+..++..+.....+.   .+....+..+.|||||++++.....   ..+.+++..+++....+
T Consensus       393 ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l  456 (740)
T 4a5s_A          393 LYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL  456 (740)
T ss_dssp             EEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence            5555555444321222   1234678899999999987755433   36888898888765444

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.82  E-value=1.5e-18  Score=197.76  Aligned_cols=221  Identities=12%  Similarity=0.038  Sum_probs=160.1

Q ss_pred             CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE-
Q 001362          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-  412 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la-  412 (1092)
                      ...++.+++++++. ++++|+.|+ ++||+...-..... .  -.+.. ....+.......|...|.+++|+|+|++|| 
T Consensus        36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~-~--~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav  109 (434)
T 2oit_A           36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNK-P--GDDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA  109 (434)
T ss_dssp             CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCC-T--TCCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred             CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcc-c--ccCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence            34789999999998 677888777 99988642110000 0  00000 000000011224677899999999999999 


Q ss_pred             ---EEeCCCEEEEEEccCC--------CcccceEEEcccccceeEEEEecC-CCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001362          413 ---VAYSKHIVQLYAYHGG--------SDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       413 ---s~~~d~~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                         +|+.|+.|+|||+.++        +.+.....+.+|...|.+++|+|+ +.  +|++++.||+|++||++++..+..
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~  187 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA  187 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence               7788999999999865        222334456789999999999998 56  899999999999999999988777


Q ss_pred             EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCceEEEEEccCCCEEEEEecCC--
Q 001362          481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK--  551 (1092)
Q Consensus       481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~~~--  551 (1092)
                      ..+|...|.+++|++  +|.+|++|+.||+|++||.+ +.....+..+       ...+.+++|++++.++++.....  
T Consensus       188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~  264 (434)
T 2oit_A          188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT  264 (434)
T ss_dssp             EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred             ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence            788999999999965  67899999999999999998 4444444332       23789999999988887654321  


Q ss_pred             -CCceeEEEEeCCCC
Q 001362          552 -EGESFLVEWNESEG  565 (1092)
Q Consensus       552 -~~~~~i~iwd~~~~  565 (1092)
                       +....+++|++...
T Consensus       265 ~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          265 LETSPDVVMALLPKK  279 (434)
T ss_dssp             SSSCCEEEEEECCCT
T ss_pred             cCCCCceEEEEeccC
Confidence             11234889998754

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.81  E-value=1.4e-18  Score=208.20  Aligned_cols=236  Identities=16%  Similarity=0.170  Sum_probs=175.3

Q ss_pred             CCcEEEEEECCCCCEEEEEeC-CCEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEeC---CCcEEEE
Q 001362          396 GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---DKTIKVW  470 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~---d~~i~vw  470 (1092)
                      ..+|.+++|+|||++||+++. ||+++||++.+++..    .+..|. ..+..++|+|| +  ++++++.   +....+|
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF   93 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence            457999999999999999887 999999999776533    344555 68999999999 5  6776664   4555665


Q ss_pred             ECCC---CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001362          471 DAVT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       471 d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      .+..   +... .+..+ ..+...+|++++++..+++++.++. .+||+.+++.......+.   .+++|+|||++++++
T Consensus        94 ~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~  167 (582)
T 3o4h_A           94 KVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL  167 (582)
T ss_dssp             EEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred             EEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence            5432   3322 33322 2344567777666555666555555 499998876554443332   788999999999988


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceEEEEeCCCCCCCC
Q 001362          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGLPEN  625 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1092)
                      +.+..+...|++||+.+++.. .+..+.   ..+..++|+|||+.|+++..++  .|++||+.+++.. .+..+  ...+
T Consensus       168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~  240 (582)
T 3o4h_A          168 GFFGGGRVSLFTSNLSSGGLR-VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDF  240 (582)
T ss_dssp             EEEETTEEEEEEEETTTCCCE-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHH
T ss_pred             EEcCCCCeEEEEEcCCCCCce-EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcCh
Confidence            765444477999999988765 555555   7789999999999999888888  8999999998877 44433  2335


Q ss_pred             ceEE--------EccCCCEEEEEeCCCeEEEEEC
Q 001362          626 PRIC--------FNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       626 ~~v~--------~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      ..++        |+|||.++++++.++.+++|++
T Consensus       241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            5666        9999999999999999999998

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=5.8e-18  Score=191.82  Aligned_cols=257  Identities=11%  Similarity=0.027  Sum_probs=178.1

Q ss_pred             ecCCCCcEEE-----EEECCCCCEEEEEeC-CC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC
Q 001362          392 VRDPGVSVNR-----VVWSPDGSLLGVAYS-KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD  463 (1092)
Q Consensus       392 l~~h~~~V~~-----l~~spdg~~las~~~-d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~  463 (1092)
                      ++.|...+..     .+|||||++||+++. ++  .|.+||+.+++...   ...++...+..++|+|||+  .|+.++.
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~  100 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD  100 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence            6667766666     899999999999987 66  48888998876443   2345555566789999999  7888888


Q ss_pred             CCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe----------------------cCCeEEEEEcCCCCc
Q 001362          464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------------------VDGKIKAWLYDSLGA  521 (1092)
Q Consensus       464 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------------------~dg~i~vwd~~~~~~  521 (1092)
                      ++.|++||+.+++....+..+...+....+..++++.+++...                      .++.|.+||+.+++.
T Consensus       101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            8999999999998877777777666555555567778877432                      346799999988754


Q ss_pred             eEEecCCCCceEEEEEcc-CCCEEEEEecCCC--CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC
Q 001362          522 RVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD  598 (1092)
Q Consensus       522 ~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~  598 (1092)
                      .. +..+...+..+.|+| ||+.|+.+.....  ....|+++|..++..........  ...+....|+|+|+.|+..+.
T Consensus       181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE--GESCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT--TEEEEEEEECTTSSCEEEEEE
T ss_pred             EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC--CcccccceECCCCCEEEEEec
Confidence            43 334455688999999 9999988765321  14468899987665433322221  124778899999998866442


Q ss_pred             -C----CcEEEEECCCCceEEEEeCCCC--C-CCCceEEEccCCCEEEEE---------eCCCeEEEEECCCCce
Q 001362          599 -D----HVIKIWDMNKVQLLTTIDAGGG--L-PENPRICFNKNGTLLAVI---------ANENRIKILETPESNS  656 (1092)
Q Consensus       599 -d----g~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~~~~l~~~---------~~dg~i~iw~~~~~~~  656 (1092)
                       +    ..|++||+.+++..........  . ......+|+|||+.|+..         ..+..|++|++.+++.
T Consensus       258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred             CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence             2    2399999999875443322210  0 012334799999988864         4466899999887643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=2.2e-17  Score=183.88  Aligned_cols=297  Identities=9%  Similarity=0.015  Sum_probs=197.7

Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001362          496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  574 (1092)
Q Consensus       496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  574 (1092)
                      ..++.++++++.++.|.+||+.+++....+..+. ..+..++|+|+|++++++..   .++.|++||+.+++.+..+...
T Consensus         8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~   84 (349)
T 1jmx_B            8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLS   84 (349)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESC
T ss_pred             cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcc
Confidence            4466889999999999999999887766665443 25678999999998776552   3567999999999988776642


Q ss_pred             ccc---CCceEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCce---EEEEeCCCCCCCCceEEEccCCCE
Q 001362          575 QLQ---HNSVSVVHFDTAKDQILAAGDD------------HVIKIWDMNKVQL---LTTIDAGGGLPENPRICFNKNGTL  636 (1092)
Q Consensus       575 ~~~---~~~v~~~~~~p~~~~l~~~s~d------------g~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~  636 (1092)
                      ...   ...+..++|+|+++++++++.+            +.|.+||+.+++.   +.....+   ..+.+++|+|+|+ 
T Consensus        85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~-  160 (349)
T 1jmx_B           85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP---RQVYLMRAADDGS-  160 (349)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC---SSCCCEEECTTSC-
T ss_pred             cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC---CcccceeECCCCc-
Confidence            200   1236788999999999998865            8999999988543   3344433   2478899999999 


Q ss_pred             EEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001362          637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~  716 (1092)
                      +++++  +.|.+||..+++....+........  .+.                     .+           ..+.+|...
T Consensus       161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~--~~~---------------------~~-----------~~~~~~~~~  204 (349)
T 1jmx_B          161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRK--GYS---------------------AP-----------DVLYFWPHQ  204 (349)
T ss_dssp             EEEES--SSEEEECTTTCCEEEEECSTTCCCT--TBC---------------------CC-----------BCCCCCCCC
T ss_pred             EEEcc--CcEEEEeCCCCceeccccccccCCc--ccc---------------------Cc-----------cceeeecCC
Confidence            55554  3499999988876654432110000  000                     00           112222211


Q ss_pred             cccCccccccccCCccccccEEEEEEecCCcEEE-----------EeecCCeeEEEeecCCCcCcCcccccccCCccccC
Q 001362          717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-----------ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP  785 (1092)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-----------~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~  785 (1092)
                      ...            ........+++++++....           .....+.+.+|++.                     
T Consensus       205 ~~~------------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  251 (349)
T 1jmx_B          205 SPR------------HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA---------------------  251 (349)
T ss_dssp             CTT------------CEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE---------------------
T ss_pred             Ccc------------eeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc---------------------
Confidence            000            0001233455655542211           11222333333321                     


Q ss_pred             CCCCceeeecCCCCCCCCCeeEEEEec-CCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeC
Q 001362          786 RHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD  864 (1092)
Q Consensus       786 ~~g~~~~~~~l~~~~~~~~v~~~~~s~-dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~  864 (1092)
                                    .+...+..++++| ||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|++++.
T Consensus       252 --------------~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~  314 (349)
T 1jmx_B          252 --------------DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGT  314 (349)
T ss_dssp             --------------ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESB
T ss_pred             --------------cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecC
Confidence                          1345678999999 99999988 88999999999998887763 34577999999 8888888888


Q ss_pred             CCcEEEEEcCCceeeEeeccc
Q 001362          865 DSTILIYNARSSEVISKLEGH  885 (1092)
Q Consensus       865 dg~v~iwd~~~~~~~~~l~~h  885 (1092)
                      ++.|.+||+.+++.+..+...
T Consensus       315 ~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          315 FNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             SSEEEEEETTTTEEEEEEECS
T ss_pred             CCeEEEEeccccceeeeeecC
Confidence            999999999999988877644

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=3.5e-17  Score=183.11  Aligned_cols=249  Identities=9%  Similarity=0.104  Sum_probs=169.2

Q ss_pred             CCeeEEEEecCCCEEEEEeCCeEEEEEcC-CceeeEEecC-CCCCeEEEEEcCCCCCE--EEEEe-------------CC
Q 001362          803 EAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHDNNV--IAIGM-------------DD  865 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~s~~d~~~--lasg~-------------~d  865 (1092)
                      ..+..++|+|||++|++++.+.|.+|++. +++....... ..+...+++|+| ++++  ++++.             .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence            45778999999999988875599999997 7776543321 112356789999 8884  55553             68


Q ss_pred             CcEEEEEcC-CceeeEeec----cccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcC-CCceeeeeeeecCCCCcCCCCC
Q 001362          866 STILIYNAR-SSEVISKLE----GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPS  938 (1092)
Q Consensus       866 g~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~  938 (1092)
                      |.+.+|++. +++....+.    .+...+.+++|+|||++|++++. ++.|++|++. +++......+.... +   ...
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~---g~~  194 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-P---GDH  194 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-T---TCC
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-C---CCC
Confidence            999999997 466544443    25567999999999998887764 6789999998 66543222222111 0   124


Q ss_pred             ceEEEEecCCCEEEEEe--CCcEEEEEcC--Cceeee---ee--cc----CCCC------CEEEEE-EecCCCEEEEEEC
Q 001362          939 ETHIQFHKDQTRFLLVH--ETHLAIYEAE--ELTCLK---QW--FP----ISSV------PISQAT-FSCDCRMVFTSFV  998 (1092)
Q Consensus       939 v~~l~~s~dg~~la~~~--d~~i~lwd~~--~~~~~~---~~--~~----~h~~------~v~~l~-fs~dg~~l~t~~~  998 (1092)
                      +..++|+|||++|+++.  ++.|.+|++.  +++...   .+  ..    +|..      .+..++ |||||++|++++.
T Consensus       195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence            78999999999998753  5789999875  555421   11  11    1222      588999 9999999887764


Q ss_pred             CC------cEEEEEcC-CCceEEeeccccccCCCCccCcccceEEEECCC--CCCEEEEEeCC-CcEEEEeCCCC
Q 001362          999 DG------TLSIHEAS-NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTN-GEVYVIEPNEP 1063 (1092)
Q Consensus       999 Dg------~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~--~~~~l~~~~~d-g~v~~w~~~~~ 1063 (1092)
                      +.      +|.+|++. +|++...........     .  .+..++|+|.  |+++|++++.+ +.|.+|++...
T Consensus       275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~-----~--~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT-----S--GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ESSTTSCCEEEEEEECTTSCEEEEEEEEECSS-----C--CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCCeEEEEEECCCCCEEEeeeeeecCC-----C--CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            32      89999996 666543211000011     1  1224667884  47888888765 89999998543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=1.9e-16  Score=175.95  Aligned_cols=297  Identities=10%  Similarity=0.109  Sum_probs=201.6

Q ss_pred             CCCceEEEEE-----cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe---
Q 001362          344 PVQHTLLLVG-----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---  415 (1092)
Q Consensus       344 pdg~~llasg-----~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~---  415 (1092)
                      +++++++++.     ..|+.|.+||..+++.+..                   +..+..+  .++|||||++|+++.   
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~   71 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYH   71 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecc
Confidence            3566555443     2478999999999987653                   3334344  899999999999986   


Q ss_pred             -------CCCEEEEEEccCCCcccceEEEcc---cccceeEEEEecCCCcEEEEEEe--CCCcEEEEECCCCceeEE-Ee
Q 001362          416 -------SKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYS-FE  482 (1092)
Q Consensus       416 -------~d~~i~iwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~~-~~  482 (1092)
                             .++.|.+||..+++.+..+.....   +......++|+|||+  +|+++.  .+++|.+||+.+++.+.. +.
T Consensus        72 ~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~  149 (361)
T 2oiz_A           72 ERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTA  149 (361)
T ss_dssp             TTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred             cccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence                   256799999998876654322111   223567899999999  455544  368999999999988877 54


Q ss_pred             cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-------EecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001362          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  555 (1092)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-------~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~  555 (1092)
                      . ... ..+.+.|.+ ...+++.+.||.+.+|++.......       .+.....+ ..+.+++++..++..+.    ++
T Consensus       150 ~-~~~-~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~  221 (361)
T 2oiz_A          150 A-AGC-WSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YG  221 (361)
T ss_dssp             G-TTE-EEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TS
T ss_pred             C-CCc-ceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CC
Confidence            2 221 223344432 3678889999999999987533322       11122222 23344677877776654    45


Q ss_pred             eEEEEeCCCCeE--EEEEeecc---cc----CCceEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCceEEE
Q 001362          556 FLVEWNESEGAI--KRTYQGLQ---LQ----HNSVSVVHFDTAKDQILAAGD-----------DHVIKIWDMNKVQLLTT  615 (1092)
Q Consensus       556 ~i~iwd~~~~~~--~~~~~~~~---~~----~~~v~~~~~~p~~~~l~~~s~-----------dg~i~iwd~~~~~~~~~  615 (1092)
                      .++++|...+..  ...+....   ..    ......++|+|+++.++++..           .+.|.+||+.+++.+..
T Consensus       222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~  301 (361)
T 2oiz_A          222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR  301 (361)
T ss_dssp             EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred             eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence            699999875532  22221100   00    011123689999988887643           35899999999999999


Q ss_pred             EeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC--ceeeecccccCceeeeeecCCC
Q 001362          616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPIS  676 (1092)
Q Consensus       616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~  676 (1092)
                      +..+.    +..++|+|||++|+++.. +.|.+||..++  +.+..+......-..++++|++
T Consensus       302 i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G  359 (361)
T 2oiz_A          302 IPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG  359 (361)
T ss_dssp             EECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred             EecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence            98764    789999999999998887 99999999999  8887765555566667776543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.77  E-value=5e-17  Score=184.66  Aligned_cols=299  Identities=11%  Similarity=-0.002  Sum_probs=194.3

Q ss_pred             CcceeeecccCCCC-----ceEEeecCCCceEEEEEcCC--CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCC
Q 001362          323 PKTVAQTLIEGSSS-----PMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP  395 (1092)
Q Consensus       323 p~~~~~~l~~h~~~-----V~~v~~spdg~~llasg~~d--~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h  395 (1092)
                      ....+..|..+...     +..++|||||++++++...+  ..|.+||+.+++...                    +..+
T Consensus        19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~--------------------l~~~   78 (396)
T 3c5m_A           19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ--------------------LTEG   78 (396)
T ss_dssp             TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE--------------------CCCS
T ss_pred             CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE--------------------eecC
Confidence            34445666655433     88999999999755555443  368888998876543                    2223


Q ss_pred             CCc-EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeE-------------------EEEecCCCc
Q 001362          396 GVS-VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-------------------LAFSAPCKQ  455 (1092)
Q Consensus       396 ~~~-V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-------------------~~~s~d~~~  455 (1092)
                      ... ...++|||||++|++++.++.|++||+.+++...   ....+......                   ++|+|+++.
T Consensus        79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~  155 (396)
T 3c5m_A           79 KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW  155 (396)
T ss_dssp             SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred             CCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc
Confidence            333 3347899999999999999999999999876432   22223322222                   356788873


Q ss_pred             EEEEEE-----eCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEE
Q 001362          456 ISVITC-----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVD  524 (1092)
Q Consensus       456 l~l~s~-----~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~  524 (1092)
                        ++.+     ..+..|.+||+.+++..... .+...+..+.|++. ++..|+..+.+      ..|.+||+........
T Consensus       156 --~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l  231 (396)
T 3c5m_A          156 --EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI  231 (396)
T ss_dssp             --HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEES
T ss_pred             --eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEe
Confidence              3332     45678999999998765544 46677888888552 45666665543      3588888876554333


Q ss_pred             ecCC-CCceEEEEEccCCCEEEEEecCC-CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC-CCCEEEEEe----
Q 001362          525 YDAP-GLGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAG----  597 (1092)
Q Consensus       525 ~~~~-~~~i~~~~~s~dg~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~s----  597 (1092)
                      .... ...+..++|+|||++|+..+... .....|++||+.+++....... .    ... +.|+| +++.+++++    
T Consensus       232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~----~~~-~~~s~~dg~~l~~~~~~~p  305 (396)
T 3c5m_A          232 KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P----PCS-HLMSNFDGSLMVGDGCDAP  305 (396)
T ss_dssp             SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C----SEE-EEEECSSSSEEEEEECCC-
T ss_pred             eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C----CCC-CCccCCCCceEEEecCCcc
Confidence            3321 23578899999999888775432 1224599999998876543322 2    123 88999 999888754    


Q ss_pred             ------------CCCcEEEEECCCCceEEEEeCCCCC--------CCCceEEEccCCCEEEEEeC-CCeEEEE--ECCCC
Q 001362          598 ------------DDHVIKIWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENRIKIL--ETPES  654 (1092)
Q Consensus       598 ------------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~~~~~-dg~i~iw--~~~~~  654 (1092)
                                  .++.|++||+.+++...........        ..+..++|+|+|+.|+..+. ++...+|  ++.++
T Consensus       306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~  385 (396)
T 3c5m_A          306 VDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES  385 (396)
T ss_dssp             ---------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred             eeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence                        3478999999888754333222110        02456899999998887775 4544444  44444

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=1.5e-16  Score=178.02  Aligned_cols=250  Identities=9%  Similarity=0.058  Sum_probs=172.8

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEcc-CCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-----------
Q 001362          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----------  462 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-----------  462 (1092)
                      +...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+++++++++           
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence            34568889999999999999888 89999997 765432 1111111 235678999999853355553           


Q ss_pred             --CCCcEEEEECC-CCceeEEEe----cCCcCeEEEeecccCCccEEEEEe-cCCeEEEEEcC-CCCceE--Eec--CCC
Q 001362          463 --DDKTIKVWDAV-TGSRTYSFE----GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARV--DYD--APG  529 (1092)
Q Consensus       463 --~d~~i~vwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~vwd~~-~~~~~~--~~~--~~~  529 (1092)
                        .++++.+|++. +|+....+.    .+...+.+++|++  ||+++++++ .++.|++|+++ +++...  .+.  .+.
T Consensus       115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T 1jof_A          115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence              68999999997 466654443    2456788888854  677777765 46899999998 554322  232  235


Q ss_pred             CceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeEEE---EEeeccc----cCC------ceEEEE-EcCCCCEE
Q 001362          530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR---TYQGLQL----QHN------SVSVVH-FDTAKDQI  593 (1092)
Q Consensus       530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~~----~~~------~v~~~~-~~p~~~~l  593 (1092)
                      ..+..++|+|||++++++..   .++.|.+|+..  +++...   .+.....    +..      .+..++ |+|+|+++
T Consensus       193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l  269 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence            57889999999999988763   24567887654  565432   2222110    011      478899 99999998


Q ss_pred             EEEeCC-C-----cEEEEECC-CCceEEE---EeCCCCCCCCceEEEcc---CCCEEEEEeCC-CeEEEEECCCC
Q 001362          594 LAAGDD-H-----VIKIWDMN-KVQLLTT---IDAGGGLPENPRICFNK---NGTLLAVIANE-NRIKILETPES  654 (1092)
Q Consensus       594 ~~~s~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~~~~l~~~~~d-g~i~iw~~~~~  654 (1092)
                      +++..+ +     .|.+|++. +++....   ....  ......++|+|   +|++|+++..+ +.|.+|+....
T Consensus       270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            876543 2     89999986 6665432   2222  22467899999   89999999864 89999998765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.76  E-value=4.9e-16  Score=172.60  Aligned_cols=313  Identities=10%  Similarity=0.099  Sum_probs=210.0

Q ss_pred             CccEEEEEe------cCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec------CCCCceeEEEEeCCCC
Q 001362          498 NIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT------SKEGESFLVEWNESEG  565 (1092)
Q Consensus       498 ~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~------~~~~~~~i~iwd~~~~  565 (1092)
                      ++++++...      .|+.|.+||..+++....+.....+  .++|+|||++++++..      .++.++.|.+||..++
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            455555543      4789999999888877666655444  8999999999998863      1223567999999999


Q ss_pred             eEEEEEeeccc---cCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEE-EeCCCCCCCCceEEEccCC-CEEE
Q 001362          566 AIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTT-IDAGGGLPENPRICFNKNG-TLLA  638 (1092)
Q Consensus       566 ~~~~~~~~~~~---~~~~v~~~~~~p~~~~l~~~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l~  638 (1092)
                      +.+..+.....   +......++++|+|++++++..  ++.|.+||+.+++.+.. +...+    ...+.+.|++ ..++
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~  167 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM  167 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence            99888765320   1134667899999999999863  68999999999988877 65432    2335677765 6788


Q ss_pred             EEeCCCeEEEEECCC-CceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccc
Q 001362          639 VIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1092)
Q Consensus       639 ~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~  717 (1092)
                      +.+.||.+.+|+... ++......                                               ...+|+...
T Consensus       168 ~~~~dg~~~~v~~~~~g~~~~~~~-----------------------------------------------~~~~~~~~~  200 (361)
T 2oiz_A          168 TICGDGGLLTINLGEDGKVASQSR-----------------------------------------------SKQMFSVKD  200 (361)
T ss_dssp             EEETTSSEEEEEECTTSSEEEEEE-----------------------------------------------CCCCSCTTT
T ss_pred             EECCCCcEEEEEECCCCcEeeecc-----------------------------------------------ccceEcCCC
Confidence            888999999998764 32221100                                               001111110


Q ss_pred             ccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCC
Q 001362          718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT  797 (1092)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~  797 (1092)
                                       .. ..+.+++++..++..+.++.+.++++.......         +..|........   ...
T Consensus       201 -----------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~---~~~  250 (361)
T 2oiz_A          201 -----------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDK---AKN  250 (361)
T ss_dssp             -----------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHH---HTT
T ss_pred             -----------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccc---ccc
Confidence                             00 011224555555555666777777764321100         000111000000   000


Q ss_pred             CCCCCCCeeEEEEecCCCEEEEEe------------CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001362          798 DSNSQEAVPCFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD  865 (1092)
Q Consensus       798 ~~~~~~~v~~~~~s~dg~~l~~~s------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d  865 (1092)
                        -.......++|+||++.+.++.            .+.|.+||+.+++.+.++..+.  +.+++|+| |+++|++++. 
T Consensus       251 --~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-  324 (361)
T 2oiz_A          251 --WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-  324 (361)
T ss_dssp             --CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-
T ss_pred             --cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-
Confidence              0011122378999988777653            2479999999999999998776  99999999 8889998887 


Q ss_pred             CcEEEEEcCCc--eeeEeeccccCCeEEEEEcCCCC
Q 001362          866 STILIYNARSS--EVISKLEGHSKRVTGLVFSDALN  899 (1092)
Q Consensus       866 g~v~iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~  899 (1092)
                      +.|.+||..++  +.+..+..+......++++|||+
T Consensus       325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            99999999999  99999877888889999999986

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.71  E-value=2.2e-14  Score=167.02  Aligned_cols=328  Identities=11%  Similarity=0.115  Sum_probs=223.5

Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceEEEEeCCCCCCCCceEEEc
Q 001362          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                      ++.|.++|..+++.+..+...    ..+..+.|+||++++++++.++.|.+||+.  +++.+..+....   ....++|+
T Consensus       176 ~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s  248 (567)
T 1qks_A          176 AGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETS  248 (567)
T ss_dssp             TTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEEC
T ss_pred             CCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEc
Confidence            667999999999999888753    356789999999999999999999999996  888888877543   25789999


Q ss_pred             ----cCCCEEEEEeC-CCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecc
Q 001362          632 ----KNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  706 (1092)
Q Consensus       632 ----~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~  706 (1092)
                          |||++++++.. ++++.++|..+.+.+..+......+                             ++.       
T Consensus       249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~-----------------------------~~~-------  292 (567)
T 1qks_A          249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY-----------------------------DEQ-------  292 (567)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT-----------------------------TTC-------
T ss_pred             cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc-----------------------------ccc-------
Confidence                69998888765 5999999988877665443110000                             000       


Q ss_pred             ccccceeccccccCccccccccCCccc-cccEEEEEEecCCcEEEEe-ecCCeeEEEeecCCCcCcCcccccccCCcccc
Q 001362          707 ENKSEVEKPLFARPSECQSLLLPSKVK-ANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ  784 (1092)
Q Consensus       707 d~~i~lw~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~s~~g~~l~~~-~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~  784 (1092)
                                              ..| ...+..+..++++..++.. ...|.+.++++.....                
T Consensus       293 ------------------------~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~----------------  332 (567)
T 1qks_A          293 ------------------------EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN----------------  332 (567)
T ss_dssp             ------------------------CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE----------------
T ss_pred             ------------------------cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc----------------
Confidence                                    001 1246667777776554444 4458888877543210                


Q ss_pred             CCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC-----CCCCeEEEEEcCCCCC
Q 001362          785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNN  857 (1092)
Q Consensus       785 ~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~  857 (1092)
                            +....+   ........+.|+|||++++++.  ++.|.++|+.+++.+..+..     |.+.-..+ ++|+.+.
T Consensus       333 ------~~v~~i---~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~  402 (567)
T 1qks_A          333 ------LKTTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGP  402 (567)
T ss_dssp             ------EEEEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEE
T ss_pred             ------ceeeee---eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCc
Confidence                  111111   1233456789999999998886  58899999999998776643     33222222 6783355


Q ss_pred             EEEEEe-CCCcEEEEEcCC-------ceeeEeeccccCCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCce--
Q 001362          858 VIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGI--  920 (1092)
Q Consensus       858 ~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-------Dg~i~iwd~~~~~~--  920 (1092)
                      +.+++. .++.|.++|..+       .+.+.++......-..+..+||+++|.....       ..+|.|+|+.+.+.  
T Consensus       403 v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g  482 (567)
T 1qks_A          403 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDG  482 (567)
T ss_dssp             EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSS
T ss_pred             EEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccc
Confidence            555554 468999999988       5677887765444345788999999888663       35899999987511  


Q ss_pred             --eeeeeeecC--CCCcCCCCCceEEEEecCCCEEEEE-e-----CCcEEEEEcCCceeeeeec
Q 001362          921 --QTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWF  974 (1092)
Q Consensus       921 --~~~~~~~~~--~~~~~~~~~v~~l~~s~dg~~la~~-~-----d~~i~lwd~~~~~~~~~~~  974 (1092)
                        .....+...  .+.......+..+.|+|||+.+.++ .     ++.|.|+|..+++....+.
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          483 SDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             SCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             cCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence              111222210  0000011358899999999988774 2     6889999999999877643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.71  E-value=9.3e-14  Score=161.76  Aligned_cols=244  Identities=11%  Similarity=0.014  Sum_probs=159.9

Q ss_pred             ceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEcc
Q 001362          347 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH  426 (1092)
Q Consensus       347 ~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~  426 (1092)
                      ++++++...+++|.++|..+++.+....                    ....+..++|||||+++++++.++.|.+||+.
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~--------------------~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~  226 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLD--------------------TGYAVHISRLSASGRYLFVIGRDGKVNMIDLW  226 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEE--------------------CSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEe--------------------CCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence            3477888889999999999998886421                    23467799999999999999999999999996


Q ss_pred             --CCCcccceEEEcccccceeEEEEe----cCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCcc
Q 001362          427 --GGSDARQQLEIDAHVGNVNDLAFS----APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH  500 (1092)
Q Consensus       427 --~~~~~~~~~~~~~h~~~v~~~~~s----~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  500 (1092)
                        +++.+.   ++.... ....++|+    |||++ ++++...+++|.|+|..+.+.+..+......+....+++     
T Consensus       227 ~~t~~~v~---~i~~G~-~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p-----  296 (567)
T 1qks_A          227 MKEPTTVA---EIKIGS-EARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP-----  296 (567)
T ss_dssp             SSSCCEEE---EEECCS-EEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEES-----
T ss_pred             CCCCcEeE---EEecCC-CCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccC-----
Confidence              665444   343322 35789999    69995 455566779999999999988877652211110000000     


Q ss_pred             EEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCc
Q 001362          501 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS  580 (1092)
Q Consensus       501 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~  580 (1092)
                                                  ...+..+..++++..++....   ..+.|.++|..+.+......-..  ...
T Consensus       297 ----------------------------~~rva~i~~s~~~~~~vv~~~---~~g~v~~vd~~~~~~~~v~~i~~--~~~  343 (567)
T 1qks_A          297 ----------------------------EPRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISA--ERF  343 (567)
T ss_dssp             ----------------------------CCCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEEC--CSS
T ss_pred             ----------------------------CCceEEEEEcCCCCEEEEEec---CCCeEEEEecCCCccceeeeeec--ccc
Confidence                                        112334555665555444331   24567777766543222211111  135


Q ss_pred             eEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeC-CCCCCCCceEE-EccCCCEEEEEe--CCCeEEEEECCC
Q 001362          581 VSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDA-GGGLPENPRIC-FNKNGTLLAVIA--NENRIKILETPE  653 (1092)
Q Consensus       581 v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~-~s~~~~~l~~~~--~dg~i~iw~~~~  653 (1092)
                      ...+.|+|++++++++. .++.|.++|..+++.+..+.. ......-.... ++|++..+.+.+  .++.|.+++..+
T Consensus       344 ~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          344 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             ccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            67789999999988765 678999999999998888775 32111112333 578755554433  357899988765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.71  E-value=1.4e-15  Score=185.50  Aligned_cols=295  Identities=10%  Similarity=0.002  Sum_probs=196.0

Q ss_pred             eecccCCCCceEEeecCCCceEEEEE--cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE-----
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVG--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-----  400 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg--~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~-----  400 (1092)
                      ..+.+|...|..++|++++- +++++  +.++...||....+.....                   +..|...+.     
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~   76 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFE   76 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGG
T ss_pred             HHHhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccc
Confidence            45678899999999999865 56666  5578899999654443332                   445655555     


Q ss_pred             ----EEEEC--CCCCE-EEEEeC-CCEEEEEEcc--C-CCcccceEEEcc-----cccceeEEEEecCCCcEEEEEEeCC
Q 001362          401 ----RVVWS--PDGSL-LGVAYS-KHIVQLYAYH--G-GSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDD  464 (1092)
Q Consensus       401 ----~l~~s--pdg~~-las~~~-d~~i~iwd~~--~-~~~~~~~~~~~~-----h~~~v~~~~~s~d~~~l~l~s~~~d  464 (1092)
                          ..+|+  |||++ |+.++. +..|.+|++.  + ++ ..   .+..     |...+.+++|+|||+  .|++++.|
T Consensus        77 ~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~  150 (662)
T 3azo_A           77 YSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEE  150 (662)
T ss_dssp             TCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEE
T ss_pred             cCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEec
Confidence                56565  99999 887654 4566666665  3 43 22   3444     677899999999999  67766665


Q ss_pred             ----------CcEEEEECCC------CceeEEEe-cCCcCeEEEeecccCCccEEEEEecC--------CeEEEEEcC-C
Q 001362          465 ----------KTIKVWDAVT------GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVD--------GKIKAWLYD-S  518 (1092)
Q Consensus       465 ----------~~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~vwd~~-~  518 (1092)
                                ..|++||+.+      ++ ...+. .+...+..++|  ++||++|+.++.+        ..|.+||+. +
T Consensus       151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~  227 (662)
T 3azo_A          151 FTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTED  227 (662)
T ss_dssp             ECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred             ccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence                      5899999988      54 44555 55666777777  5588899888755        379999998 4


Q ss_pred             C---CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC-----ceEEEEEcCCC
Q 001362          519 L---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN-----SVSVVHFDTAK  590 (1092)
Q Consensus       519 ~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~p~~  590 (1092)
                      +   ........+...+..++|+|||+.++++..  ++...|++||..+++.......+.....     .+..++|+|++
T Consensus       228 g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~  305 (662)
T 3azo_A          228 GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG  305 (662)
T ss_dssp             SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred             CcccccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence            5   233333344678899999999995555433  3344799999878876554443321000     14578899999


Q ss_pred             CEEEEEeCCCcEEEE--ECCCCceEEEEeCCCCCCCCceEEEccCCCE--EEEEeCCC--eEEEEECCCCceee
Q 001362          591 DQILAAGDDHVIKIW--DMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANEN--RIKILETPESNSVD  658 (1092)
Q Consensus       591 ~~l~~~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg--~i~iw~~~~~~~~~  658 (1092)
                      ..+++++. +.+++|  |..+++ +..+..+.  ..+..+ +++++..  ++.++.+.  .|.+++..+++...
T Consensus       306 ~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~  374 (662)
T 3azo_A          306 LIAVVHGK-GAAVLGILDPESGE-LVDAAGPW--TEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRART  374 (662)
T ss_dssp             CEEEEEBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred             EEEEEEEc-CccEEEEEECCCCc-EEEecCCC--CeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence            99999988 999999  655555 55555442  234444 1444443  33444454  45556666665443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.70  E-value=3.1e-15  Score=166.36  Aligned_cols=262  Identities=10%  Similarity=0.115  Sum_probs=178.1

Q ss_pred             CceEEeecCCCceEEEEEc--------CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001362          336 SPMSMDFHPVQHTLLLVGT--------NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~--------~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      .+..+++  ||++++.+..        .++.|.+||+.+++...                    +    ..+..++||||
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~SpD   69 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISPD   69 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECTT
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECCC
Confidence            6677788  8986554421        25679999998876432                    2    46788999999


Q ss_pred             CCEEEEEeCC---C--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-------------------
Q 001362          408 GSLLGVAYSK---H--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-------------------  463 (1092)
Q Consensus       408 g~~las~~~d---~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-------------------  463 (1092)
                      |++||+++.+   +  .|.+|++.+++...    +..+.. +..++|+|||+.  |+.++.                   
T Consensus        70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~  142 (347)
T 2gop_A           70 GKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWFD  142 (347)
T ss_dssp             SSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC--
T ss_pred             CCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceeec
Confidence            9999988653   3  47888888765332    333334 999999999994  554442                   


Q ss_pred             --------CCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCC-------eEEEEEcCCCCceEEecCC
Q 001362          464 --------DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-------KIKAWLYDSLGARVDYDAP  528 (1092)
Q Consensus       464 --------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~vwd~~~~~~~~~~~~~  528 (1092)
                              ...|.+||+.+++.+..+.. . .+..++|+  +|| +++++..++       ...+|.++ ......+..+
T Consensus       143 g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~  216 (347)
T 2gop_A          143 DLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK  216 (347)
T ss_dssp             -------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE
T ss_pred             CcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEeccC
Confidence                    25799999999887555654 3 77788885  477 777776542       44566555 3333333333


Q ss_pred             CCceEEEEEccCCCEEEEEecCCC----CceeEEEEeCCCCeEEEEEeeccccCCceEE-EEEcCCCCEEEEEeCCCcEE
Q 001362          529 GLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNESEGAIKRTYQGLQLQHNSVSV-VHFDTAKDQILAAGDDHVIK  603 (1092)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~~~s~dg~i~  603 (1092)
                       ..+..+  +|||++|+.++....    ....|++||  +++.......+.   ..+.. +.|+ ++ .+++++.++.++
T Consensus       217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~  286 (347)
T 2gop_A          217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN  286 (347)
T ss_dssp             -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred             -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence             444443  999999988775331    245799999  666544444433   56775 8999 88 888899999999


Q ss_pred             EEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE-EEEECC
Q 001362          604 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETP  652 (1092)
Q Consensus       604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i-~iw~~~  652 (1092)
                      +| +.+++.......   ...+..++|+|  .++++++.++.. .+|.+.
T Consensus       287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            99 876665444432   23578899999  677777776654 677665

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.69  E-value=1e-15  Score=173.71  Aligned_cols=244  Identities=9%  Similarity=-0.013  Sum_probs=166.1

Q ss_pred             EEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceEEEcccccce-eEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001362          399 VNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v-~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  474 (1092)
                      +..++|||||++|+.....   ..|.+||+.+++...    +..+...+ ..+.|+|||+  .|+.++.++.|++||+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~  111 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLET  111 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETTT
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECCC
Confidence            6778999999999887543   478899998875332    33333333 3488999999  788888888999999999


Q ss_pred             CceeEEEecCCcCeEE---Eee--------------cccCCccEEEEE-----ecCCeEEEEEcCCCCceEEecCCCCce
Q 001362          475 GSRTYSFEGHGAPVYS---LCP--------------HAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGC  532 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~---~~~--------------~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~i  532 (1092)
                      ++.......+......   +++              ..+++++.++..     ..+..|.+||+.+++..... .+...+
T Consensus       112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~  190 (396)
T 3c5m_A          112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWL  190 (396)
T ss_dssp             CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCE
T ss_pred             CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccc
Confidence            8876666545443322   111              123344444433     35668999999887654443 345578


Q ss_pred             EEEEEcc-CCCEEEEEecCCCC--ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEE
Q 001362          533 TRMAYSA-NGRRLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKI  604 (1092)
Q Consensus       533 ~~~~~s~-dg~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~d-----g~i~i  604 (1092)
                      ..+.|+| +++.++.++.....  ...|++||..+++.........  ...+..+.|+|++++|+.++.+     +.|++
T Consensus       191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  268 (396)
T 3c5m_A          191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE--GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK  268 (396)
T ss_dssp             EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT--TEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred             ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC--CccccceEECCCCCEEEEEecCCCCccceEEE
Confidence            8999999 88888777642110  1569999987765433322111  1357789999999988776543     45999


Q ss_pred             EECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEEEe----------------CCCeEEEEECCCCce
Q 001362          605 WDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIA----------------NENRIKILETPESNS  656 (1092)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~----------------~dg~i~iw~~~~~~~  656 (1092)
                      ||+.+++.........    .. ++|+| +|+++++++                .++.|++|+..+++.
T Consensus       269 ~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          269 ANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             ECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             EECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence            9999887655443321    23 89999 999888765                347899999987653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.68  E-value=2.6e-14  Score=153.79  Aligned_cols=242  Identities=10%  Similarity=0.092  Sum_probs=174.9

Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecC------CCCCeEEEEEc-CCCCCEEEEEeC-CCcEEEE
Q 001362          801 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP------PSPTATSLAFN-PHDNNVIAIGMD-DSTILIY  871 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s-~~d~~~lasg~~-dg~v~iw  871 (1092)
                      +-..+.+++++++|+++++.. ++.|.+||.. ++.+..+..      +...+..++++ + +++++++... ++.|++|
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEE
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEE
Confidence            456688999999999888765 6899999987 666666542      33578899994 5 7777666643 8899999


Q ss_pred             EcCCceeeEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCE
Q 001362          872 NARSSEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  950 (1092)
Q Consensus       872 d~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~  950 (1092)
                      | .+++.+..+. .+...+.+++++|+|+++++...++.|.+||..... ..  .+... +..   ..+..++++++|++
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~--~~~~~-~~~---~~p~~i~~~~~g~l  177 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-LH--KFGCS-KHL---EFPNGVVVNDKQEI  177 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EE--EEECT-TTC---SSEEEEEECSSSEE
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-EE--EeCCC-Ccc---CCcEEEEECCCCCE
Confidence            9 5677776664 345678999999999988888888999999975422 11  12111 111   24789999999997


Q ss_pred             EEEE-eCCcEEEEEcCCceeeeeec-cCCCCCEEEEEEecCCCEEEEEECCC-cEEEEEcCCCceEEeeccccccCCCCc
Q 001362          951 FLLV-HETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTTS 1027 (1092)
Q Consensus       951 la~~-~d~~i~lwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~t~~~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1027 (1092)
                      +++. .++.|++||.. ++.+..+. .++...+..++++++|+++++...++ .|.+|+. +++.+..+...        
T Consensus       178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~--------  247 (286)
T 1q7f_A          178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK--------  247 (286)
T ss_dssp             EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES--------
T ss_pred             EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc--------
Confidence            7774 57899999974 55554432 22346789999999999888887776 9999995 56666555421        


Q ss_pred             cCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001362         1028 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1028 ~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
                      .....+.+++++| ++.++++ +.|++|++|++....
T Consensus       248 ~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          248 VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEccccc
Confidence            1112456788998 4665555 689999999986544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=1.1e-14  Score=159.79  Aligned_cols=248  Identities=12%  Similarity=0.095  Sum_probs=181.6

Q ss_pred             CCCeeEEEEecCCCEEEEEeCC-------------------------eEEEEEcCCceeeEEec-CCCCCeEEEEEcCCC
Q 001362          802 QEAVPCFALSKNDAYLFSASGG-------------------------VISLYIVMTFKTILTIM-PPSPTATSLAFNPHD  855 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~sdg-------------------------~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d  855 (1092)
                      -..+.+++++|+|+++++...+                         .|.+||..+++.+..+. .+......++++| +
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence            4568999999999999887643                         69999999998877765 3446789999999 8


Q ss_pred             CCEEEEEeCCCcEEEEEcCCce-eeEee---------ccccCCeEEEEEcC-CCCEEEEEe-CCCcEEEEEcCCCceeee
Q 001362          856 NNVIAIGMDDSTILIYNARSSE-VISKL---------EGHSKRVTGLVFSD-ALNILVSSG-GDAQIFVWDVDGWGIQTC  923 (1092)
Q Consensus       856 ~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~sp-dg~~l~s~s-~Dg~i~iwd~~~~~~~~~  923 (1092)
                      ++++++...++.|++|+..... .+..+         .++......++++| ++.++++.+ .++.|++|+.+. +....
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence            8898888889999999986542 45555         34556789999999 788888886 689999999543 32221


Q ss_pred             eeeecC-----CCCcCCCCCceEEEEecC-CCEEEE-EeCCcEEEEEcCCceeeeeec-cCCCCCEEEEEEec------C
Q 001362          924 RSLQTP-----DGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAEELTCLKQWF-PISSVPISQATFSC------D  989 (1092)
Q Consensus       924 ~~~~~~-----~~~~~~~~~v~~l~~s~d-g~~la~-~~d~~i~lwd~~~~~~~~~~~-~~h~~~v~~l~fs~------d  989 (1092)
                      ......     .+..   .....++++|+ |.++++ ..++.|++||..+|+.+..+. ..+...+..++|+|      +
T Consensus       181 ~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~  257 (329)
T 3fvz_A          181 WGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN  257 (329)
T ss_dssp             ECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred             eccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence            110000     0111   24789999999 555555 367789999999888877653 34567889999999      3


Q ss_pred             CCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001362          990 CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus       990 g~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
                      |+..++...+.+|++|++.+|+.+..+....       ...-.+..++++| ++.++++...++.|++|++..
T Consensus       258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCCCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred             CCEEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence            3333333344589999999999887764211       1112456789999 578888888999999999854

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=1.8e-14  Score=158.24  Aligned_cols=248  Identities=11%  Similarity=0.085  Sum_probs=184.0

Q ss_pred             CCceEEeecCCCceEEEEEcCC------------------------CcEEEEecCCCCeeEEeeeeeeecccccceeeEe
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNV------------------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA  390 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d------------------------~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~  390 (1092)
                      +.|.+++++|+|+ ++++.+.+                        ++|.+||..+|+.+...                 
T Consensus        24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-----------------   85 (329)
T 3fvz_A           24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS-----------------   85 (329)
T ss_dssp             SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----------------
T ss_pred             CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----------------
Confidence            4899999999998 67777766                        47999999888876420                 


Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC-cccceEEE---------cccccceeEEEEec-CCCcEEEE
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEI---------DAHVGNVNDLAFSA-PCKQISVI  459 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~~---------~~h~~~v~~~~~s~-d~~~l~l~  459 (1092)
                       -.++-..+..++++|+|+++++...++.|++||..+.. .+.   .+         .++......++|+| ++.  +++
T Consensus        86 -~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv  159 (329)
T 3fvz_A           86 -GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV  159 (329)
T ss_dssp             -CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred             -CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence             22455688999999999988888889999999986542 222   33         24445688999999 677  677


Q ss_pred             EEe-CCCcEEEEECCCCceeEEEecCC----------cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--
Q 001362          460 TCG-DDKTIKVWDAVTGSRTYSFEGHG----------APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--  526 (1092)
Q Consensus       460 s~~-~d~~i~vwd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--  526 (1092)
                      +.+ .++.|++|| .+|+.+..+....          .....+++.+. .+.++++...+++|++|+.++++....+.  
T Consensus       160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~  237 (329)
T 3fvz_A          160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA  237 (329)
T ss_dssp             EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred             EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence            775 689999999 6788777774322          33778888543 26788888889999999998777666653  


Q ss_pred             CCCCceEEEEEccCCCEEEEEecC---CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001362          527 APGLGCTRMAYSANGRRLFSCGTS---KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  603 (1092)
Q Consensus       527 ~~~~~i~~~~~s~dg~~l~~~~~~---~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~  603 (1092)
                      .....+..++++| +..+...+..   ......|++||..+++.+..+.....+...+..++++|+|..+++...++.|+
T Consensus       238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~  316 (329)
T 3fvz_A          238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW  316 (329)
T ss_dssp             TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred             ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence            3455788999999 4444333210   12245799999999999888753222236789999999997777788899999


Q ss_pred             EEECCC
Q 001362          604 IWDMNK  609 (1092)
Q Consensus       604 iwd~~~  609 (1092)
                      +|++..
T Consensus       317 ~~~~~~  322 (329)
T 3fvz_A          317 KFTLTE  322 (329)
T ss_dssp             EEEEEE
T ss_pred             EEeCCc
Confidence            999753

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.67  E-value=3.7e-10  Score=139.94  Aligned_cols=587  Identities=9%  Similarity=0.020  Sum_probs=338.6

Q ss_pred             CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..|+++.-.++|...  .|+.+| +..||-   .....     +......    .  -.-....|.++...++|.+.+ |
T Consensus        43 n~v~~I~qD~~G~lW--igT~~G-L~ryDG---~~f~~-----~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWi-g  104 (795)
T 4a2l_A           43 STVFSIDQDKRGNMW--FATYDG-VNKYDG---YAFTV-----YQHNEDD----P--NSIANDISRIVKTDSQGRVWI-G  104 (795)
T ss_dssp             SCEEEEEECTTSCEE--EEETTE-EEEECS---SCEEE-----ECCCTTC----T--TSCSCSCEEEEEECTTSCEEE-E
T ss_pred             ceeEEEEEcCCCCEE--EeecCc-CcccCC---CceEE-----EeCCCCC----C--CcccccceeEEEECCCCCEEE-E
Confidence            489999999999643  445555 566663   22211     1100000    0  000246799999999987665 4


Q ss_pred             eCCCEEEEEEccCCCcccceEEEccccc----ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC-CcC-e
Q 001362          415 YSKHIVQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAP-V  488 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~----~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~-v  488 (1092)
                      +.+| +..||..+++..    .+.....    .|.++...++|.  +.+ ++. +.|..||.++++.......+ ... |
T Consensus       105 T~~G-l~~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i  175 (795)
T 4a2l_A          105 TRDG-LSRYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTI  175 (795)
T ss_dssp             ESSC-EEEEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCC
T ss_pred             eCCc-hheeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcce
Confidence            4566 899998775421    2222111    288998888887  343 444 45899998776533211111 112 6


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001362          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1092)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1092)
                      .++...  .++. +..++.++-+..|+..+.+..... ......|.++...++|...+....     .-++.||..+++.
T Consensus       176 ~~i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~-----~Gl~~~~~~~~~~  247 (795)
T 4a2l_A          176 ASTLYR--QGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEG-----AGLFLINPKTKEI  247 (795)
T ss_dssp             EEEEEE--ETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBS-----SCEEEEETTTTEE
T ss_pred             EEEEEC--CCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECC-----CCeEEEeCCCCeE
Confidence            676653  3444 445666656888887665543221 123456888888888876665422     1289999888765


Q ss_pred             EEEEeec----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----CCCCCCceEEEccCCCEEE
Q 001362          568 KRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       568 ~~~~~~~----~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~  638 (1092)
                      .......    ......|.++...++|.. ..|+.+ -|.+||..++.........     -....|.++...++|. |.
T Consensus       248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW  324 (795)
T 4a2l_A          248 KNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MW  324 (795)
T ss_dssp             EEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EE
T ss_pred             EEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EE
Confidence            4432221    112356999999888764 445555 5899998877654432211     0123577888888876 55


Q ss_pred             EEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccc
Q 001362          639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA  718 (1092)
Q Consensus       639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~  718 (1092)
                      +|+.++-|..|+..+.... ....          .                      +.                     
T Consensus       325 igt~~~Gl~~~~~~~~~~~-~~~~----------~----------------------~~---------------------  350 (795)
T 4a2l_A          325 LGTYFGGLNYYHPIRNRFK-NIRN----------I----------------------PY---------------------  350 (795)
T ss_dssp             EEESSSCEEEECGGGGSSE-EECC----------C----------------------TT---------------------
T ss_pred             EEECCCCeEEeCCCcccce-EEcC----------C----------------------CC---------------------
Confidence            6777677777765433111 0000          0                      00                     


Q ss_pred             cCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCC
Q 001362          719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD  798 (1092)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~  798 (1092)
                                +.......|.++...++|. +..++.++-+..|+......            ..+....+. .. ..+  
T Consensus       351 ----------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~-~~-~~l--  403 (795)
T 4a2l_A          351 ----------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDE-SA-RGI--  403 (795)
T ss_dssp             ----------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC--------CC--
T ss_pred             ----------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCC-cc-cCC--
Confidence                      0001234688888888887 44455555566665332211            001000000 00 000  


Q ss_pred             CCCCCCeeEEEEecCCC-EEEEEeCCeEEEEEcCCceeeEEec----CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEc
Q 001362          799 SNSQEAVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA  873 (1092)
Q Consensus       799 ~~~~~~v~~~~~s~dg~-~l~~~sdg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~  873 (1092)
                        ....|.+++..++|+ +.+...++.+..||..+++......    .+...|.++...+ ++.+.+ |+.+ -+.+|+.
T Consensus       404 --~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~  478 (795)
T 4a2l_A          404 --GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNP  478 (795)
T ss_dssp             --SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEET
T ss_pred             --CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeC
Confidence              245789999999998 5544445789999998776443221    1345789999988 676555 4554 5889998


Q ss_pred             CCceeeEeecc------ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC
Q 001362          874 RSSEVISKLEG------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1092)
Q Consensus       874 ~~~~~~~~l~~------h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  947 (1092)
                      .+++.......      +...|.++...++|++.+... . -|..|+..+++. .  ..............|.++...++
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~-~--~~~~~~~~~l~~~~i~~i~~d~~  553 (795)
T 4a2l_A          479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI-Q--KASILPVSNVTKLFTNCIYEASN  553 (795)
T ss_dssp             TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE-E--ECCCSCSCGGGGSCEEEEEECTT
T ss_pred             CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE-E--EecCCCCCCCCCCeeEEEEECCC
Confidence            87764332211      236799999999988777554 4 488999887543 1  11000000111136889999999


Q ss_pred             CCEEEEEeCCcEEEEEcCCceeeeee-ccC-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCC
Q 001362          948 QTRFLLVHETHLAIYEAEELTCLKQW-FPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1092)
Q Consensus       948 g~~la~~~d~~i~lwd~~~~~~~~~~-~~~-h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1025 (1092)
                      |.+.+++.. .+..||..+++...-. ..+ ....|.++...++|.+.+++ . +-|..|+..++... .+....-++..
T Consensus       554 g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~dGl~~~  629 (795)
T 4a2l_A          554 GIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESDGLQSN  629 (795)
T ss_dssp             SCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGGTCSCS
T ss_pred             CCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcCCCccc
Confidence            997776554 7889998776543311 111 14568899999999877655 3 55788998877543 34322222222


Q ss_pred             CccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001362         1026 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1026 ~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                          .+..-++..++ + ..|..|+.+|- ..++..
T Consensus       630 ----~f~~~~~~~~~-~-G~l~~g~~~Gl-~~~~p~  658 (795)
T 4a2l_A          630 ----QFNTASYCRTS-V-GQMYFGGINGI-TTFRPE  658 (795)
T ss_dssp             ----CEEEEEEEECT-T-SCEEEEETTEE-EEECGG
T ss_pred             ----cCccCceeECC-C-CeEEEecCCce-EEEcHH
Confidence                22223455665 3 45777777774 455543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.66  E-value=1.6e-14  Score=176.15  Aligned_cols=249  Identities=11%  Similarity=0.002  Sum_probs=171.7

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEE--eCCCEEEEEEccCCCcccceEEEccccccee---------EEEEe--cCCCcEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQQLEIDAHVGNVN---------DLAFS--APCKQISV  458 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~--~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~---------~~~~s--~d~~~l~l  458 (1092)
                      +.+|...|..++|++++.++++.  +.++...||....+...+   .+..|...+.         ...|+  |||+.+ |
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~-l   94 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL-L   94 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE-E
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE-E
Confidence            66799999999999887777777  558889999975443332   4566666666         66666  999941 4


Q ss_pred             EEEe-CCCcEEEEECC--CCceeEEEec-----CCcCeEEEeecccCCccEEEEEecC----------CeEEEEEcCCC-
Q 001362          459 ITCG-DDKTIKVWDAV--TGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISVD----------GKIKAWLYDSL-  519 (1092)
Q Consensus       459 ~s~~-~d~~i~vwd~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d----------g~i~vwd~~~~-  519 (1092)
                      +.++ .+..|.+|++.  ++.....+..     |...+.+++|+  +||+.|++++.+          ..|.+||+.+. 
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s--pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  172 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL--PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA  172 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE--TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred             EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC--CCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence            4333 35667777765  2034455555     56678888885  577899988877          58999999872 


Q ss_pred             ----CceEEec-CCCCceEEEEEccCCCEEEEEecCCC----CceeEEEEeCC-CC---eEEEEEeeccccCCceEEEEE
Q 001362          520 ----GARVDYD-APGLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNES-EG---AIKRTYQGLQLQHNSVSVVHF  586 (1092)
Q Consensus       520 ----~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~~~v~~~~~  586 (1092)
                          .....+. .+...+..++|||||++|+.++.+..    ....|++||+. ++   +......++.   ..+..+.|
T Consensus       173 ~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~---~~~~~~~~  249 (662)
T 3azo_A          173 AADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE---EAIAQAEW  249 (662)
T ss_dssp             TTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT---BCEEEEEE
T ss_pred             cccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC---ceEcceEE
Confidence                2334444 44567788999999999998875432    13579999998 57   4444444444   67899999


Q ss_pred             cCCCCEEEEEeCCC--cEEEEECCCCceEEEEeCCCCC------CCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001362          587 DTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGL------PENPRICFNKNGTLLAVIANENRIKILE  650 (1092)
Q Consensus       587 ~p~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~~~~~dg~i~iw~  650 (1092)
                      +|||+.+++++.++  .|++||..+++.......+...      ..+..++|+|+++++++++. +.++||.
T Consensus       250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  320 (662)
T 3azo_A          250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI  320 (662)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred             CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence            99999777777788  6667777677655443322111      01456777777877777777 7777773

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.65  E-value=1.9e-13  Score=146.93  Aligned_cols=248  Identities=14%  Similarity=0.147  Sum_probs=177.7

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE-CCCCC
Q 001362          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS  409 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~-spdg~  409 (1092)
                      .+|-..+.+++++|+|+ ++++...++.|.+||.. ++.+......             ....+|...+..+++ .++|+
T Consensus        26 ~g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~~-------------~~~~~~~~~p~~i~~~~~~g~   90 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGEC-------------GKRDSQLLYPNRVAVVRNSGD   90 (286)
T ss_dssp             TTCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECCB-------------SSSTTCBSSEEEEEEETTTTE
T ss_pred             CCccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEeccc-------------CCCcccccCceEEEEEcCCCe
Confidence            35566899999999998 78888888999999987 5544321100             001234567899999 57777


Q ss_pred             EEEEEeC-CCEEEEEEccCCCcccceEEEc-ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe--cCC
Q 001362          410 LLGVAYS-KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GHG  485 (1092)
Q Consensus       410 ~las~~~-d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~  485 (1092)
                      ++++... ++.|.+|| .+++.+.   .+. .+...+.+++++++|+  ++++...++.|.+||. .++.+..+.  ++.
T Consensus        91 l~v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~  163 (286)
T 1q7f_A           91 IIVTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHL  163 (286)
T ss_dssp             EEEEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTC
T ss_pred             EEEEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCcc
Confidence            7776643 78899999 4554333   332 3445789999999998  7787778899999995 566666664  344


Q ss_pred             cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CCceEEEEEccCCCEEEEEecCCCCce-eEEEEeC
Q 001362          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGES-FLVEWNE  562 (1092)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~~~~~~~~-~i~iwd~  562 (1092)
                      ..+..+++.+  ++.++++...++.|++||.. +.....+...  ...+..++++++|+.+++...    ++ .|.+||.
T Consensus       164 ~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~  236 (286)
T 1q7f_A          164 EFPNGVVVND--KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ  236 (286)
T ss_dssp             SSEEEEEECS--SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT
T ss_pred             CCcEEEEECC--CCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC
Confidence            5678888854  66788888889999999974 3444444433  256889999999987777643    33 7999995


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001362          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  610 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~  610 (1092)
                       +++.+..+..+. ....+..++++|+++.+++ +.++.|++|++...
T Consensus       237 -~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          237 -DGQLISALESKV-KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             -TSCEEEEEEESS-CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             -CCCEEEEEcccC-CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence             566777776543 1234789999999976555 67999999997653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.65  E-value=4.9e-10  Score=138.93  Aligned_cols=535  Identities=8%  Similarity=0.032  Sum_probs=318.9

Q ss_pred             CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..|.++...++|..++  |+. +.+..||..+++.... ...               .......|.++...++|.+.+..
T Consensus        88 n~I~~i~~d~~g~lWi--gT~-~Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~t  148 (795)
T 4a2l_A           88 DISRIVKTDSQGRVWI--GTR-DGLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIST  148 (795)
T ss_dssp             SCEEEEEECTTSCEEE--EES-SCEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEEE
T ss_pred             cceeEEEECCCCCEEE--EeC-CchheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEEE
Confidence            4799999999998333  344 4589999887653321 000               00000118888888888766654


Q ss_pred             eCCCEEEEEEccCCCcccceEEEccc-ccc-eeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcCeEEE
Q 001362          415 YSKHIVQLYAYHGGSDARQQLEIDAH-VGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL  491 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~-v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~  491 (1092)
                       .. .+..||..+++.....   .++ ... |.++...+++.   +..++.++-|..||..+++..... ..+...|.++
T Consensus       149 -~~-gl~~~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i  220 (795)
T 4a2l_A          149 -PE-GLIMFDIKESKFIDDS---FSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAI  220 (795)
T ss_dssp             -TT-EEEEEETTTTEEECSS---SCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEE
T ss_pred             -CC-ceEEEECCCCEEEecc---CCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEE
Confidence             44 4889998765321100   011 123 88888888886   344565556899998877654321 1234567777


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001362          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      ...  .++. +..++.++-+.+||..+.........       ....|.++...++|...+... .     -|.+||..+
T Consensus       221 ~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~-----Gl~~~~~~~  291 (795)
T 4a2l_A          221 LQQ--SPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-N-----DLNIYHEGT  291 (795)
T ss_dssp             EEE--ETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-S-----CEEEEETTT
T ss_pred             EEc--CCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-C-----hhheEcCCC
Confidence            653  3444 55555554578888766543322211       234689999998888666542 1     289999888


Q ss_pred             CeEEEEEee----ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC--C--CCCCCceEEEccCCCE
Q 001362          565 GAIKRTYQG----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--G--GLPENPRICFNKNGTL  636 (1092)
Q Consensus       565 ~~~~~~~~~----~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~--~--~~~~v~~v~~s~~~~~  636 (1092)
                      +........    .......|.++...++|. +..|+.++-|..|+..++.........  .  ....|.+++..++|+ 
T Consensus       292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-  369 (795)
T 4a2l_A          292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-  369 (795)
T ss_dssp             TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-
T ss_pred             CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-
Confidence            765443221    112246799999988876 566777778999987665543222111  0  123477888888776 


Q ss_pred             EEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001362          637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~  716 (1092)
                      |.+|+.++-|..|+..++..........                                 ..                 
T Consensus       370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~~---------------------------------~~-----------------  399 (795)
T 4a2l_A          370 LWIGTNDGGLNLYNPITQRFTSYTLQED---------------------------------ES-----------------  399 (795)
T ss_dssp             EEEEESSSCEEEECTTTCCEEEECCC------------------------------------------------------
T ss_pred             EEEEECCCCeEEEcCCCCcEEEEecCCC---------------------------------Cc-----------------
Confidence            5567777778888876543211100000                                 00                 


Q ss_pred             cccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecC
Q 001362          717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT  796 (1092)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l  796 (1092)
                             . .    ......|.++...++|..|..++.++-+..|+......            ..+....         
T Consensus       400 -------~-~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~------------~~~~~~~---------  446 (795)
T 4a2l_A          400 -------A-R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV------------ENFNQRN---------  446 (795)
T ss_dssp             --------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE------------EEECTTT---------
T ss_pred             -------c-c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE------------EEeecCC---------
Confidence                   0 0    00234578888888888455555555566666433211            1111000         


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecC------CCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 001362          797 TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILI  870 (1092)
Q Consensus       797 ~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~v~i  870 (1092)
                       .......|.++...++|.+.+... +.+.+||..+++.......      ....|.++...+ ++.+.+ |+. +-+..
T Consensus       447 -~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~  521 (795)
T 4a2l_A          447 -SQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSV  521 (795)
T ss_dssp             -SCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEE
T ss_pred             -CCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEE
Confidence             001345789999999998777665 5688999887655332211      235789999988 776655 444 45888


Q ss_pred             EEcCCceeeEeec-------cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEE
Q 001362          871 YNARSSEVISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  943 (1092)
Q Consensus       871 wd~~~~~~~~~l~-------~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  943 (1092)
                      |+..+++.  .+.       .....|.++...++|++.++.. .| |..||..+++...   .....+..  ...|.++.
T Consensus       522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~~---~~~~~gl~--~~~i~~i~  592 (795)
T 4a2l_A          522 FKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIKR---YNTTNGLP--NNVVYGIL  592 (795)
T ss_dssp             EEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEEE---ECGGGTCS--CSCEEEEE
T ss_pred             EeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEEE---eCCCCCCc--hhheEEEE
Confidence            99887765  222       2446799999999998776544 34 8889987754322   22222221  13588899


Q ss_pred             EecCCCEEEEEeCCcEEEEEcCCceeeeeeccCC---CCCE--EEEEEecCCCEEEEEECCCcEEEEEcC
Q 001362          944 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPI--SQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       944 ~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h---~~~v--~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
                      ..++|.+.+++ ++.|..|+..+++... +....   ...+  .++...+||++++ |+.+| +..++..
T Consensus       593 ~d~~g~lWi~t-~~Gl~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~~~p~  658 (795)
T 4a2l_A          593 EDSFGRLWLST-NRGISCFNPETEKFRN-FTESDGLQSNQFNTASYCRTSVGQMYF-GGING-ITTFRPE  658 (795)
T ss_dssp             ECTTSCEEEEE-TTEEEEEETTTTEEEE-ECGGGTCSCSCEEEEEEEECTTSCEEE-EETTE-EEEECGG
T ss_pred             ECCCCCEEEEc-CCceEEEcCCCCcEEE-cCCcCCCccccCccCceeECCCCeEEE-ecCCc-eEEEcHH
Confidence            99999877766 5668888987665432 21111   1222  4667788887655 66676 4555543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.63  E-value=1.2e-13  Score=152.28  Aligned_cols=274  Identities=10%  Similarity=0.023  Sum_probs=188.3

Q ss_pred             CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..|.+++|+|++. .++..+.++.++.|.   ++....                   +.++...+.+++|+|+|++++++
T Consensus         6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~   62 (333)
T 2dg1_A            6 QDLPTLFYSGKSN-SAVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD   62 (333)
T ss_dssp             CCCCBCCSCGGGG-CSSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred             cccceeeecCCcc-ceeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence            3688999999997 466667788899992   333221                   44566778999999999988888


Q ss_pred             eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC----CcEEEEECCCCceeEEEe--cCCcCe
Q 001362          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE--GHGAPV  488 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~--~~~~~v  488 (1092)
                      ..++.|.+||..+++...   ....+...+.+++|+++|+  ++++...+    +.|.+||.++++....+.  .+...+
T Consensus        63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  137 (333)
T 2dg1_A           63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI  137 (333)
T ss_dssp             TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred             CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence            888999999998875332   1224567899999999998  66666655    689999988877654443  234568


Q ss_pred             EEEeecccCCccEEEEEec------CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001362          489 YSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      ..+++.+  ++.++++...      .+.|..++....+... +......+..++|+|+|+.++.+..   .++.|++||.
T Consensus       138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~  211 (333)
T 2dg1_A          138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL  211 (333)
T ss_dssp             EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred             cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence            8888854  6667776553      2455555544433322 2222235778999999997766542   1456999998


Q ss_pred             CC-CeEEEEE-----eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC----CCCCceEEEcc
Q 001362          563 SE-GAIKRTY-----QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNK  632 (1092)
Q Consensus       563 ~~-~~~~~~~-----~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~  632 (1092)
                      .+ +.....+     .... ....+..++++++++.+++...++.|.+||. +++.+..+..+..    ...+.+++|+|
T Consensus       212 ~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~  289 (333)
T 2dg1_A          212 EDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP  289 (333)
T ss_dssp             CTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred             cCCCcCcccccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC
Confidence            63 3322211     1111 0136788999999998888778899999998 5677777654421    11478999999


Q ss_pred             CCCEEEEEeCCC
Q 001362          633 NGTLLAVIANEN  644 (1092)
Q Consensus       633 ~~~~l~~~~~dg  644 (1092)
                      +++.|++++.++
T Consensus       290 dg~~L~v~~~~g  301 (333)
T 2dg1_A          290 GTNQLIICSNDI  301 (333)
T ss_dssp             TSCEEEEEEECG
T ss_pred             CCCEEEEEeCcc
Confidence            987777766653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=1.6e-13  Score=168.10  Aligned_cols=250  Identities=10%  Similarity=-0.009  Sum_probs=175.8

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCC-----EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc--
Q 001362          394 DPGVSVNRVVWSPDGSLLGVAYSKH-----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--  466 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d~-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--  466 (1092)
                      +|...+..++|||||++||.++.++     .|++||+.+++....  .+  ....+..++|+|||+  .|+.++.++.  
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~--~~~~~~~~~wspDg~--~l~~~~~~~~~~  195 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL--ERVKFSCMAWTHDGK--GMFYNAYPQQDG  195 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE--EEECSCCEEECTTSS--EEEEEECCCCSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc--cCcccceEEEEeCCC--EEEEEEECCccc
Confidence            4556789999999999999876543     899999999875442  12  222367899999999  5666666655  


Q ss_pred             --------------EEEEECCCCcee--EEEec--CCcCeEEEeecccCCccEEEEEec-----CCeEEEEEcCC-----
Q 001362          467 --------------IKVWDAVTGSRT--YSFEG--HGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYDS-----  518 (1092)
Q Consensus       467 --------------i~vwd~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~-----  518 (1092)
                                    |++|++.+++..  ..+..  |...+..+.|  ++||++|+.++.     +..|.+||+.+     
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~  273 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI  273 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence                          999999887632  22232  4555677777  557788887765     56899999986     


Q ss_pred             -CC-ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEE
Q 001362          519 -LG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQIL  594 (1092)
Q Consensus       519 -~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~  594 (1092)
                       +. ....+..+...+.. .|+++|+.|+..+........|++||+.++..  ...+..+. ....+..+.|++++..++
T Consensus       274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~  351 (710)
T 2xdw_A          274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVL  351 (710)
T ss_dssp             CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEE
T ss_pred             CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEE
Confidence             42 34444444444444 58899999888775443467899999988742  24444443 013677889987777778


Q ss_pred             EEeCCCc--EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCc
Q 001362          595 AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN  655 (1092)
Q Consensus       595 ~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~  655 (1092)
                      +...++.  |++|++.+++.+..+..+  ...+..++++|++..++....    .++++.||+.+++
T Consensus       352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            8888875  566787778877777655  334677889999887665433    4789999998765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.61  E-value=2.1e-13  Score=147.38  Aligned_cols=249  Identities=12%  Similarity=0.050  Sum_probs=177.5

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ..+..+..+.....+++|+|+|+.+++++..++.|..||..++  ...                   +..+...+.++++
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~   76 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCL   76 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeE
Confidence            3345556666688999999999867889999999999999887  322                   3346678999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEccc-ccceeEEEEecCCCcEEEEEE----e-------------CCCc
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITC----G-------------DDKT  466 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~----~-------------~d~~  466 (1092)
                      +|+|+++++...++.|.+||..+++.........+. ...+..++++|+|+  ++++.    +             ..+.
T Consensus        77 ~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~  154 (296)
T 3e5z_A           77 NKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRW  154 (296)
T ss_dssp             CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred             CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcE
Confidence            999998888777789999999887643211111111 23567899999998  67763    2             1345


Q ss_pred             EEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC-CCCc---eEEecCCCCceEEEEEccCCC
Q 001362          467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGA---RVDYDAPGLGCTRMAYSANGR  542 (1092)
Q Consensus       467 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~---~~~~~~~~~~i~~~~~s~dg~  542 (1092)
                      |..++.. ++ +..+..+......++|+  ++++.+++.+.++.|.+|++. .+..   ...+......+..++++++|+
T Consensus       155 l~~~~~~-g~-~~~~~~~~~~~~gi~~s--~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          155 VFRLAPD-GT-LSAPIRDRVKPNGLAFL--PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL  230 (296)
T ss_dssp             EEEECTT-SC-EEEEECCCSSEEEEEEC--TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred             EEEECCC-CC-EEEeecCCCCCccEEEC--CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence            6666654 44 44455566677888885  466777778888999999987 3332   223333444567899999998


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEE-cCCCCEEEEEeCCCcEEEEECCCCce
Q 001362          543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQL  612 (1092)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~p~~~~l~~~s~dg~i~iwd~~~~~~  612 (1092)
                      ..++.      .+.|.+||.. ++.+..+..+.   . +.+++| .|+++.|++++.++ +..++..+...
T Consensus       231 l~v~~------~~~v~~~~~~-g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~  289 (296)
T 3e5z_A          231 IWASA------GDGVHVLTPD-GDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL  289 (296)
T ss_dssp             EEEEE------TTEEEEECTT-SCEEEEEECSS---C-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred             EEEEc------CCeEEEECCC-CCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence            76665      2349999986 77777777666   4 888999 58999999988764 55566666544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.60  E-value=3.6e-13  Score=149.55  Aligned_cols=285  Identities=11%  Similarity=0.040  Sum_probs=175.6

Q ss_pred             ceEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC---Ce--
Q 001362          580 SVSVVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE---NR--  645 (1092)
Q Consensus       580 ~v~~~~~~p~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d---g~--  645 (1092)
                      .+....+  +|++++...         .++.|++||+.+++....       ..+..++|+|||++|+..+.+   +.  
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~   86 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSE   86 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence            4555666  777776542         256799999998875433       236889999999999987754   33  


Q ss_pred             EEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccc
Q 001362          646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  725 (1092)
Q Consensus       646 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~  725 (1092)
                      |.+|++.+++......                                                                
T Consensus        87 l~~~~~~~g~~~~l~~----------------------------------------------------------------  102 (347)
T 2gop_A           87 IWVADLETLSSKKILE----------------------------------------------------------------  102 (347)
T ss_dssp             EEEEETTTTEEEEEEE----------------------------------------------------------------
T ss_pred             EEEEECCCCceEEEEc----------------------------------------------------------------
Confidence            6666666543221110                                                                


Q ss_pred             cccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCe
Q 001362          726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  805 (1092)
Q Consensus       726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v  805 (1092)
                             ... +..++|+|||+.|+.++.+..       ..                     .            ....+
T Consensus       103 -------~~~-~~~~~wspdg~~l~~~~~~~~-------~~---------------------~------------~~~~~  134 (347)
T 2gop_A          103 -------AKN-IRSLEWNEDSRKLLIVGFKRR-------ED---------------------E------------DFIFE  134 (347)
T ss_dssp             -------ESE-EEEEEECTTSSEEEEEEECCC-------C----------------------------------------
T ss_pred             -------CCC-ccceeECCCCCEEEEEEccCC-------Cc---------------------C------------CcEEE
Confidence                   112 677889999998887765410       00                     0            00011


Q ss_pred             eEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-------cEEEEEcCCcee
Q 001362          806 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-------TILIYNARSSEV  878 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-------~v~iwd~~~~~~  878 (1092)
                      ..+.+..+|.-+.......|.+||+.+++.+..+.. . .+..++|+| |+ +++++..++       ...||.+.+++.
T Consensus       135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~  210 (347)
T 2gop_A          135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKE  210 (347)
T ss_dssp             --CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred             cccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCce
Confidence            122233344332222235699999998887455544 3 788999999 78 888776542       344554445553


Q ss_pred             eEeeccccCCeEEEEEcCCCCEEEEEeCCC--------cEEEEEcCCCceeeeeeeecCCCCcCCCCCceE-EEEecCCC
Q 001362          879 ISKLEGHSKRVTGLVFSDALNILVSSGGDA--------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQT  949 (1092)
Q Consensus       879 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~s~dg~  949 (1092)
                       ..+..+ ..+..+  ||||++|+.++.++        .|.+||  +++.     .....++.   ..+.. ++|+ || 
T Consensus       211 -~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-----~~l~~~~~---~~~~~~~~~s-dg-  274 (347)
T 2gop_A          211 -EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-----MGILDEVD---RGVGQAKIKD-GK-  274 (347)
T ss_dssp             -EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-----EESSTTCC---SEEEEEEEET-TE-
T ss_pred             -EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-----EeccccCC---cccCCccEEc-Cc-
Confidence             444445 555554  99999998887543        577777  4331     22222222   24665 8999 88 


Q ss_pred             EEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcE-EEEEcCCCc
Q 001362          950 RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEASNLE 1011 (1092)
Q Consensus       950 ~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i-~vwd~~~~~ 1011 (1092)
                      ++++ ..++.++|| +.+++... +. .+...|.+++|+|  .++++++.++.. .+|.++ ++
T Consensus       275 ~~~~~~~~~~~~l~-~~~g~~~~-~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          275 VYFTLFEEGSVNLY-IWDGEIKP-IA-KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             EEEEEEETTEEEEE-EESSSEEE-EE-CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred             EEEEEecCCcEEEE-EcCCceEE-Ee-cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence            6666 577889999 87665433 23 3477899999999  678888877765 888877 54

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=8.5e-09  Score=127.45  Aligned_cols=588  Identities=12%  Similarity=0.107  Sum_probs=335.7

Q ss_pred             CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..|+++.-.++|...+  |+.+| +..||-.+   ...     +.......  ..  ..-....|.++...++|..|-+|
T Consensus        19 n~V~~I~qD~~G~lWi--gT~~G-L~ryDG~~---f~~-----~~~~~~~~--~~--~~l~~n~I~~i~~d~~g~~lWig   83 (781)
T 3v9f_A           19 NYVLSITQDKQGFLWF--ATEEG-LNKFDGTR---FIT-----YYKEEQSS--SV--QSITGNELNEVYTDPVQPVIWIA   83 (781)
T ss_dssp             SBEEEEEECTTSCEEE--EESSC-EEEECSSS---EEE-----ECCCSSCS--SS--CCCSCSCEEEEEECSSSSEEEEE
T ss_pred             CEeEEEEECCCCCEEE--ccCCc-CccccCCc---eEE-----EEcCCCCC--cc--ccccccccceEEEcCCCCEEEEE
Confidence            4899999999996444  44555 66677332   211     11000000  00  00023569999999988845567


Q ss_pred             eCCCEEEEEEccCCCcccceEEEc-----c---cccceeEEEEec--CCCcEEEEEEeCCCcEEEEECCCCceeEEEec-
Q 001362          415 YSKHIVQLYAYHGGSDARQQLEID-----A---HVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-  483 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~~~-----~---h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-  483 (1092)
                      +.++-+..||..+++..    .+.     .   ....|.++....  ++.   +..++.++-|..+|..+++.. .+.. 
T Consensus        84 t~~~Gl~~~d~~~~~f~----~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~-~~~~~  155 (781)
T 3v9f_A           84 TQRAGLNAYNYETQSFS----VYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFT-HYNKS  155 (781)
T ss_dssp             ESSSCEEEEETTTTEEE----EECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEE-EESTT
T ss_pred             eCCCCcceECCCCCeEE----eeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEE-eeccC
Confidence            77734999998875421    121     0   123588888777  665   444554556889998776543 2321 


Q ss_pred             -----CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-------CCCCceEEEEEccCCCEEEEEecCC
Q 001362          484 -----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       484 -----~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                           ....|.++...  .++ .|..++.++-+..||..+.+......       .....|.++...++|...+...   
T Consensus       156 ~~~~l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~---  229 (781)
T 3v9f_A          156 TVPALPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS---  229 (781)
T ss_dssp             TCTTCSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET---
T ss_pred             cccCCCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC---
Confidence                 12346666553  344 45556666567888876654322111       1234688898888888766542   


Q ss_pred             CCceeEEEEeCCCCeEEEEEeec----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe-------CC-
Q 001362          552 EGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-------AG-  619 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-------~~-  619 (1092)
                        . -+.+||..+++........    ......|.++...+++. +..|+..+-|.++|..++.......       .. 
T Consensus       230 --~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~  305 (781)
T 3v9f_A          230 --K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGD  305 (781)
T ss_dssp             --T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCS
T ss_pred             --C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCC
Confidence              2 3899998877654332211    11235788998887765 6666765678899988765432221       10 


Q ss_pred             ----CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCC
Q 001362          620 ----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK  695 (1092)
Q Consensus       620 ----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s  695 (1092)
                          -....|.++...++|. |.+|+.++-|..++........ ...          .+                     
T Consensus       306 ~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~----------~~---------------------  352 (781)
T 3v9f_A          306 NNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSY----------SP---------------------  352 (781)
T ss_dssp             STTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC----------------------------------
T ss_pred             CCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-ecc----------Cc---------------------
Confidence                1123477788888776 5567766777777765432111 000          00                     


Q ss_pred             CCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccc
Q 001362          696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT  775 (1092)
Q Consensus       696 ~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~  775 (1092)
                       ..                            ..+.......|.++...++|.. ..++.++-+..|+......       
T Consensus       353 -~~----------------------------~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~-------  395 (781)
T 3v9f_A          353 -TQ----------------------------MNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVA-------  395 (781)
T ss_dssp             --C----------------------------CCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEE-------
T ss_pred             -cc----------------------------cccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeE-------
Confidence             00                            0000002345788888888874 4455444566665322110       


Q ss_pred             cccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEec--CCCCCeEEEEEcC
Q 001362          776 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNP  853 (1092)
Q Consensus       776 ~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~  853 (1092)
                           ..+....           ......|.+++..++|.+.+...++.+..++..+++......  .....|.+++..+
T Consensus       396 -----~~~~~~~-----------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~  459 (781)
T 3v9f_A          396 -----IYNKENR-----------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK  459 (781)
T ss_dssp             -----ECC----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT
T ss_pred             -----EEccCCC-----------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC
Confidence                 0000000           013467889999888887775546779999987775433221  2346789999887


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCceeeEeeccc-----cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec
Q 001362          854 HDNNVIAIGMDDSTILIYNARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT  928 (1092)
Q Consensus       854 ~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~  928 (1092)
                       ++.+ ..|+. +-+..||..+++........     ...|.++...++|.+.+.....| |..||..+++...   +..
T Consensus       460 -~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~  532 (781)
T 3v9f_A          460 -NKKI-WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQ  532 (781)
T ss_dssp             -TSEE-EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECT
T ss_pred             -CCCE-EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccC
Confidence             6654 44665 55889998876543322212     46799999999888766443345 7888887654222   222


Q ss_pred             CCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccC---CCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 001362          929 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus       929 ~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~Dg~i~vw 1005 (1092)
                      ..+.  ....|.++...++|.+.+++.+|-+..||..+++... +...   ....|.++...++|.+.++ +..| |..+
T Consensus       533 ~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~  607 (781)
T 3v9f_A          533 YEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCY  607 (781)
T ss_dssp             TTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEE
T ss_pred             CCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEE
Confidence            2221  1246889999999998777665444888887665332 1111   1346788888889986664 4555 7778


Q ss_pred             EcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001362         1006 EASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1006 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      +..++... .+....-++..    ....-++..++ + ..|..|+.+| +..++..
T Consensus       608 ~~~~~~~~-~~~~~dGl~~~----~f~~~~~~~~~-~-G~l~~g~~~G-l~~f~p~  655 (781)
T 3v9f_A          608 ITSKKCFY-TYDHSNNIPQG----SFISGCVTKDH-N-GLIYFGSING-LCFFNPD  655 (781)
T ss_dssp             ETTTTEEE-EECGGGTCCSS----CEEEEEEEECT-T-SCEEEEETTE-EEEECSC
T ss_pred             ECCCCceE-EecccCCcccc----ccccCceEECC-C-CEEEEECCCc-eEEEChh
Confidence            88766543 33322222221    22223455665 3 4577788887 4556653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.59  E-value=1.2e-13  Score=169.18  Aligned_cols=250  Identities=10%  Similarity=-0.003  Sum_probs=172.4

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~----~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +|...+..++|||||++++.+.+.+|    .|++||+.+|+.+.. .                 +  +...+..++||||
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wspD  181 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHD  181 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTT
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEeC
Confidence            45556889999999996444433333    899999999986642 0                 1  1123667999999


Q ss_pred             CCEEEEEeCCCE----------------EEEEEccCCCcccce-EEEcccccceeEEEEecCCCcEEEEEEeC-----CC
Q 001362          408 GSLLGVAYSKHI----------------VQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGD-----DK  465 (1092)
Q Consensus       408 g~~las~~~d~~----------------i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-----d~  465 (1092)
                      |+.|+.++.++.                |++|++.++...... .....|...+..++|||||++  |+.++.     +.
T Consensus       182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~  259 (710)
T 2xdw_A          182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVN  259 (710)
T ss_dssp             SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCC
T ss_pred             CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCcc
Confidence            999999987765                999999887532111 112235566889999999995  444332     57


Q ss_pred             cEEEEECCC------Cc-eeEEEecCCcCeEEEeecccCCccEEEEEecC----CeEEEEEcCCCCc--eEEecCCC--C
Q 001362          466 TIKVWDAVT------GS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA--RVDYDAPG--L  530 (1092)
Q Consensus       466 ~i~vwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~--~~~~~~~~--~  530 (1092)
                      .|++||+.+      +. ....+..+...+... |++  +|..|+..+..    +.|.+||+.+...  ...+..+.  .
T Consensus       260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  336 (710)
T 2xdw_A          260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD  336 (710)
T ss_dssp             EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred             EEEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence            899999987      53 466676676666543 433  55566555443    3699999987652  23333333  3


Q ss_pred             ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-e---CCCcEEEEE
Q 001362          531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-G---DDHVIKIWD  606 (1092)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-s---~dg~i~iwd  606 (1092)
                      .+..+++++++..+++...  ++...|++|++.+|+.+..+..+.   ..+..+.++|+++.++.. +   ..++++.||
T Consensus       337 ~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          337 VLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             EEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred             eEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC---ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence            6778899877766666654  335678899987888777776654   778889999998777643 2   457899999


Q ss_pred             CCCCc
Q 001362          607 MNKVQ  611 (1092)
Q Consensus       607 ~~~~~  611 (1092)
                      +.+++
T Consensus       412 ~~tg~  416 (710)
T 2xdw_A          412 LTKEE  416 (710)
T ss_dssp             TTSSS
T ss_pred             CCCCc
Confidence            99877

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.58  E-value=1.2e-12  Score=138.59  Aligned_cols=245  Identities=12%  Similarity=0.104  Sum_probs=179.8

Q ss_pred             EEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC-CcEEEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001362          349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG  427 (1092)
Q Consensus       349 llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~las~~~d~~i~iwd~~~  427 (1092)
                      +|++++.++.|.+||.++|+.+..                   +..+. ..+.+++++|+|++|+  +.++.|..||. +
T Consensus         7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~   64 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D   64 (276)
T ss_dssp             EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred             EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence            789999999999999999998765                   33344 4788999999999998  35677999999 7


Q ss_pred             CCcccceEEEccc-ccceeEEEEecCCCcEEEEEEeC-CCcEEEEECCCCceeEEEecC------CcCeEEEeecccCCc
Q 001362          428 GSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENI  499 (1092)
Q Consensus       428 ~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~  499 (1092)
                      |+.+.   .+..+ ...+.++.+.+||+  ++++.+. ++.|..+|. +|+.+..+...      ......+++  .++|
T Consensus        65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G  136 (276)
T 3no2_A           65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG  136 (276)
T ss_dssp             SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred             CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence            76555   34443 34688999999999  7777776 778888884 78888777521      122333333  5578


Q ss_pred             cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc--
Q 001362          500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ--  577 (1092)
Q Consensus       500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--  577 (1092)
                      .++++...++.|..||.+ ++.+..+.... ...++.+.++|+.++++..    .+.|..+|..+|+.+..+......  
T Consensus       137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~  210 (276)
T 3no2_A          137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV  210 (276)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred             CEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence            899999999999999988 78777776643 4556788899999988754    457999999999999888754311  


Q ss_pred             -CCceEEEEEcCCCCEEEEEeCC--------CcEEEEEC-CCCceEEEEeCCCCCCCCceEE
Q 001362          578 -HNSVSVVHFDTAKDQILAAGDD--------HVIKIWDM-NKVQLLTTIDAGGGLPENPRIC  629 (1092)
Q Consensus       578 -~~~v~~~~~~p~~~~l~~~s~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~  629 (1092)
                       ...+..++..++|+.+++.+..        +..+++.+ .+|+.+..+........+..++
T Consensus       211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~  272 (276)
T 3no2_A          211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC  272 (276)
T ss_dssp             CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred             cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence             1237788889999888876421        23345555 4777777776665555555544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.57  E-value=4e-13  Score=147.14  Aligned_cols=278  Identities=10%  Similarity=-0.010  Sum_probs=190.9

Q ss_pred             CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccce
Q 001362          355 NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ  434 (1092)
Q Consensus       355 ~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~  434 (1092)
                      .+++|.+||.++++........    .      .   -.........+++. +++..++...++.|.+||..+++.+.  
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~----~------n---~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~--   78 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYR----A------N---GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG--   78 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHH----H------H---SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE--
T ss_pred             CCceEEEEECCCCEEhhhhHhh----h------c---CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE--
Confidence            3789999999998765421000    0      0   00122446777774 45555556667899999999987665  


Q ss_pred             EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC-----cCeEEEeecccCCccEEEEEe-cC
Q 001362          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-----APVYSLCPHAKENIHFIFSIS-VD  508 (1092)
Q Consensus       435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~~-~d  508 (1092)
                       ++. .......++++++++  ++++...++.|.+||..+++....+....     .....+++  . ++.++++.. .+
T Consensus        79 -~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~  151 (328)
T 3dsm_A           79 -RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ  151 (328)
T ss_dssp             -EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred             -EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence             333 335688999999985  56666578999999999999887776433     13455666  2 334444444 48


Q ss_pred             CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC------ceeEEEEeCCCCeEEEEEeeccccCCceE
Q 001362          509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVS  582 (1092)
Q Consensus       509 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~  582 (1092)
                      +.|.++|..+.+....+... .....++++|+|++++++..+...      .+.|+++|..+++....+....  .....
T Consensus       152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~  228 (328)
T 3dsm_A          152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPS  228 (328)
T ss_dssp             CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCE
T ss_pred             CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCce
Confidence            99999999988776665543 345678999999977765432100      2679999999999887765432  13688


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEEE----eCCCeEEEEECCCCcee
Q 001362          583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVI----ANENRIKILETPESNSV  657 (1092)
Q Consensus       583 ~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~----~~dg~i~iw~~~~~~~~  657 (1092)
                      .++++|+++.++++..  .|.+||..+++................++++| ++.++++.    ..++.|.+|+.. ++.+
T Consensus       229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~  305 (328)
T 3dsm_A          229 EVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI  305 (328)
T ss_dssp             EEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred             eEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence            9999999999988765  89999999887632111111123467899999 55555555    568999999998 7776


Q ss_pred             eecc
Q 001362          658 DAAG  661 (1092)
Q Consensus       658 ~~~~  661 (1092)
                      ..+.
T Consensus       306 ~~i~  309 (328)
T 3dsm_A          306 DEFY  309 (328)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.57  E-value=3.4e-12  Score=140.65  Aligned_cols=246  Identities=8%  Similarity=-0.029  Sum_probs=168.7

Q ss_pred             cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ......+.++...+.+++|+|+|+ +++++..++.|.+||..+++....                   ...+...+.+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~i~   93 (333)
T 2dg1_A           34 AEPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIK   93 (333)
T ss_dssp             CEEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEE
T ss_pred             cceeEEEeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE-------------------eeCCCCCcceEE
Confidence            345566777777889999999998 788888889999999998875532                   223567899999


Q ss_pred             ECCCCCEEEEEeCC----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC------CCcEEEEECC
Q 001362          404 WSPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAV  473 (1092)
Q Consensus       404 ~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~  473 (1092)
                      |+|+|+++++...+    +.|.+||..++...... .-..+...+.+++++|+|+  ++++...      .+.|..+|.+
T Consensus        94 ~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~  170 (333)
T 2dg1_A           94 IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPD  170 (333)
T ss_dssp             ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTT
T ss_pred             ECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCC
Confidence            99999988887766    68999999887533211 1012445789999999998  5665543      3556677766


Q ss_pred             CCceeEEEecCCcCeEEEeecccCCccEE-EEEecCCeEEEEEcCCC-CceEE------ecCC-CCceEEEEEccCCCEE
Q 001362          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSL-GARVD------YDAP-GLGCTRMAYSANGRRL  544 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~-~~~~~------~~~~-~~~i~~~~~s~dg~~l  544 (1092)
                      +++... +..+...+..++++  +++..+ ++.+.++.|.+||+... .....      .... ...+..++++++|+..
T Consensus       171 ~~~~~~-~~~~~~~~~~i~~~--~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~  247 (333)
T 2dg1_A          171 FRTVTP-IIQNISVANGIALS--TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLY  247 (333)
T ss_dssp             SCCEEE-EEEEESSEEEEEEC--TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEE
T ss_pred             CCEEEE-eecCCCcccceEEC--CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEE
Confidence            555433 32333457778885  466644 55566889999999642 22211      1111 1367889999999977


Q ss_pred             EEEecCCCCceeEEEEeCCCCeEEEEEeeccc---cCCceEEEEEcCCCCEEEEEeCCC
Q 001362          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGDDH  600 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~l~~~s~dg  600 (1092)
                      ++...    ++.|.+||. +++.+..+.....   +...+..++|+|+++.|++++.++
T Consensus       248 v~~~~----~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          248 VAMYG----QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EEEET----TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EEEcC----CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            76643    456999998 5666666654431   011578899999988887766554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.57  E-value=2.3e-13  Score=166.07  Aligned_cols=246  Identities=11%  Similarity=-0.016  Sum_probs=166.0

Q ss_pred             CCCCcEEEEEECCCCCEEEEE-----eCCCEEEEEEccCCCcccceEEEcccccce--eEEEEecCCCcEEEEEEeCCCc
Q 001362          394 DPGVSVNRVVWSPDGSLLGVA-----YSKHIVQLYAYHGGSDARQQLEIDAHVGNV--NDLAFSAPCKQISVITCGDDKT  466 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~-----~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v--~~~~~s~d~~~l~l~s~~~d~~  466 (1092)
                      +|...+..++|||||++||.+     +.+..|++||+.+|+.+..     .+...+  ..++|+|||+  .|+.++.|..
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----~~~~~~~~~~~~wspDg~--~l~~~~~d~~  190 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----DVIEGGKYATPKWTPDSK--GFYYEWLPTD  190 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----CCBSCCTTCCCEECTTSS--EEEEEECCCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----cccCcccccceEEecCCC--EEEEEEecCC
Confidence            566789999999999999954     3456899999999875511     122222  6899999999  6777777765


Q ss_pred             -------------EEEEECCCCc----eeEEEecCCcCeEEEeecccCCccEEEEEecCC----eEEEEEcCCCCceEEe
Q 001362          467 -------------IKVWDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGARVDY  525 (1092)
Q Consensus       467 -------------i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~  525 (1092)
                                   |++|++.++.    ++.....|...+..+.+  ++||++|+.++.++    .|.+|+..++.. ..+
T Consensus       191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l  267 (695)
T 2bkl_A          191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL--SRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLL  267 (695)
T ss_dssp             TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE--CTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEE
T ss_pred             CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE--CCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEe
Confidence                         9999999886    33333345567778887  45778888777665    566665544433 333


Q ss_pred             cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE---EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcE
Q 001362          526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI  602 (1092)
Q Consensus       526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i  602 (1092)
                      ..+...+....+ ++|. ++..+.....+..|++||+.++..   ...+..+.  ...+..++++ ++..+++...|+..
T Consensus       268 ~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~  342 (695)
T 2bkl_A          268 VKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS--SASLLSVSIV-GGHLSLEYLKDATS  342 (695)
T ss_dssp             EECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-TTEEEEEEEETTEE
T ss_pred             ecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC--CCeEEEEEEE-CCEEEEEEEECCEE
Confidence            334444455555 6777 665554333467899999987753   33333321  2457788888 66777888889988


Q ss_pred             EEEECC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCc
Q 001362          603 KIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN  655 (1092)
Q Consensus       603 ~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~  655 (1092)
                      ++|.+. +++....+..+. ...+..++++|+++.++....    .++|++||+.+++
T Consensus       343 ~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          343 EVRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            888654 455555555432 234667788899987775443    4789999998775

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.56  E-value=1.8e-11  Score=132.47  Aligned_cols=285  Identities=11%  Similarity=0.055  Sum_probs=195.0

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001362          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  409 (1092)
                      +..+...+.+++++|+|+ +.++...++.|.+||.. ++.... .                 +..+...+.+++++++|+
T Consensus        10 ~~~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~   69 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY-P-----------------LPTPDAKVMCLTISSDGE   69 (299)
T ss_dssp             CCSSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE-E-----------------CSSTTCCEEEEEECTTSC
T ss_pred             CCCcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe-c-----------------CCcccCceeeEEECCCCC
Confidence            445556899999999998 56665557899999988 553321 0                 223457899999999999


Q ss_pred             EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE-EecCCcCe
Q 001362          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPV  488 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v  488 (1092)
                      ++++...++.|..||.. ++ ... ..+......+..+++.++|.  ++++...++.|.+||. +++.... ...+...+
T Consensus        70 l~v~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~  143 (299)
T 2z2n_A           70 VWFTENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYP  143 (299)
T ss_dssp             EEEEETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred             EEEeCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence            88887778889999986 33 221 12223455789999999998  6777777889999998 6554432 22344567


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001362          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1092)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1092)
                      ..+++.  +++.++++...++.|..||. +++.... .......+..++++++|+..++...    .+.|..||. +++.
T Consensus       144 ~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~  215 (299)
T 2z2n_A          144 SFITLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEI  215 (299)
T ss_dssp             EEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCE
T ss_pred             ceEEEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcE
Confidence            888874  46677777777889999998 4443322 3333456889999999986665432    456999998 6664


Q ss_pred             EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001362          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1092)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  647 (1092)
                      .. +... .....+..++++++++..++...++.|..||. ++. +..+........+.++++ ++|++.++.. .+.+.
T Consensus       216 ~~-~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~  289 (299)
T 2z2n_A          216 TE-FKIP-TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG  289 (299)
T ss_dssp             EE-EECS-STTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred             EE-EECC-CCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence            43 3221 12357889999999986666557789999998 454 334433333345788999 8887666654 56777


Q ss_pred             EEECCCC
Q 001362          648 ILETPES  654 (1092)
Q Consensus       648 iw~~~~~  654 (1092)
                      .++..+.
T Consensus       290 ~~~~~~~  296 (299)
T 2z2n_A          290 KLTLIKD  296 (299)
T ss_dssp             EEEEC--
T ss_pred             EEEcCcc
Confidence            7776543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.56  E-value=6.9e-13  Score=143.90  Aligned_cols=288  Identities=14%  Similarity=0.114  Sum_probs=194.5

Q ss_pred             EEeecCCCceEEEEEcC----CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          339 SMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       339 ~v~~spdg~~llasg~~----d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      .....||+++++++-..    ++.|.+.|..+++.+....                   ....+ . +++||||++|+++
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~-------------------vG~~P-~-va~spDG~~lyVa   95 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-------------------GGFLP-N-PVVADDGSFIAHA   95 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-------------------ECSSC-E-EEECTTSSCEEEE
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE-------------------CCCCC-c-EEECCCCCEEEEE
Confidence            35668999876666554    6899999999998886421                   12233 4 9999999999887


Q ss_pred             e----------CCCEEEEEEccCCCcccceEEEcc--c---ccceeEEEEecCCCcEEEEEEe--CCCcEEEEECCCCce
Q 001362          415 Y----------SKHIVQLYAYHGGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSR  477 (1092)
Q Consensus       415 ~----------~d~~i~iwd~~~~~~~~~~~~~~~--h---~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~  477 (1092)
                      .          .++.|.+||..+++.+..+. +..  +   ...-..++|+|||++  ++.+.  .++.|.++|+.+++.
T Consensus        96 n~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t~~v  172 (386)
T 3sjl_D           96 STVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEGKAF  172 (386)
T ss_dssp             EEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTTTEE
T ss_pred             cccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCCCcE
Confidence            5          35789999999987666432 211  0   123557999999995  44443  378999999999999


Q ss_pred             eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEec----CCCCce-EEEEEc-cCCCEEEEEecC
Q 001362          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYD----APGLGC-TRMAYS-ANGRRLFSCGTS  550 (1092)
Q Consensus       478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~----~~~~~i-~~~~~s-~dg~~l~~~~~~  550 (1092)
                      +.++.....    ..+.|. ..+.+++.+.||.+.+.++.. ++......    ....++ ....|. ++|++++...  
T Consensus       173 v~tI~v~g~----~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--  245 (386)
T 3sjl_D          173 KRMLDVPDC----YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--  245 (386)
T ss_dssp             EEEEECCSE----EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred             EEEEECCCc----ceeecC-CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--
Confidence            998854221    111222 235677888899999999876 33322111    111122 123553 6887666442  


Q ss_pred             CCCceeEEEEeCCCCe--EEEEEeec-------cccCCceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCc
Q 001362          551 KEGESFLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQ  611 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~p~~~~l~~~s~----------dg~i~iwd~~~~~  611 (1092)
                         .+.|++.|..++.  ....+.-.       .........++++++++.++....          .+.|.+.|+.+++
T Consensus       246 ---~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k  322 (386)
T 3sjl_D          246 ---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE  322 (386)
T ss_dssp             ---TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             ---CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence               4569999987664  33333200       000123345677999999988642          2579999999999


Q ss_pred             eEEEEeCCCCCCCCceEEEccCCC-EEEEEe-CCCeEEEEECCCCceeeecccc
Q 001362          612 LLTTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAAGVL  663 (1092)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~  663 (1092)
                      .+..+....   .+..+++++|++ +|++.. .++.|.++|..+++.+..+...
T Consensus       323 v~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~  373 (386)
T 3sjl_D          323 RLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  373 (386)
T ss_dssp             EEEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             EEEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence            999987653   367999999997 666654 4899999999999888877643

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=1.4e-11  Score=136.37  Aligned_cols=203  Identities=10%  Similarity=0.011  Sum_probs=141.3

Q ss_pred             eEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe
Q 001362          806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK  881 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~  881 (1092)
                      ..++++|||++|++++   ++.|.++| .+++.+.. +....    ++.+.|.+.+.+++.+.||.+.+++. +++....
T Consensus       128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~  201 (373)
T 2mad_H          128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA  201 (373)
T ss_pred             cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence            4688999999998876   36799999 99988877 65322    24555645567777889999999999 8876633


Q ss_pred             ec-----cccCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC----cCCCCCceEEEEecCCCEE
Q 001362          882 LE-----GHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV----MTLAPSETHIQFHKDQTRF  951 (1092)
Q Consensus       882 l~-----~h~~~V-~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~l~~s~dg~~l  951 (1092)
                      ..     ....++ ....+++++..++..+..+.+.+.|+.+........+......    .........++++||++.+
T Consensus       202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l  281 (373)
T 2mad_H          202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI  281 (373)
T ss_pred             EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence            22     111222 3356777776655556788999999976542221222111100    0000124458899999988


Q ss_pred             EEEe-----------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCceEEee
Q 001362          952 LLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       952 a~~~-----------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
                      .+..           .+.|.++|..+++.+..+..+  ....+++|+|||+ .++++. .++.|.+||+.+++.+.++
T Consensus       282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            7742           247999999999998886543  3688999999999 777776 4899999999999999774

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.56  E-value=4.5e-12  Score=137.52  Aligned_cols=204  Identities=13%  Similarity=0.078  Sum_probs=142.7

Q ss_pred             eeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-ceeeE
Q 001362          805 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS  880 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~  880 (1092)
                      ...++|+|||+++.++.   ++.|.++|+.+++.+.++....  . ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus       139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~  214 (386)
T 3sjl_D          139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI  214 (386)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred             CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence            44688999999888775   4789999999999999886432  1 233433 666777888899999999876 56533


Q ss_pred             eeccc----cCCeE-EEEEc-CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC------CCCcCCCCCceEEEEecCC
Q 001362          881 KLEGH----SKRVT-GLVFS-DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHKDQ  948 (1092)
Q Consensus       881 ~l~~h----~~~V~-~l~~s-pdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~s~dg  948 (1092)
                      ....+    ..++. ..+|. ++|++++ .+.+|.|.+.|+.++.......+...      .+...  +....+++++++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~  291 (386)
T 3sjl_D          215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRAL  291 (386)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTT
T ss_pred             eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCC
Confidence            22111    12222 24664 6775554 66689999999987643222222210      11111  235568889999


Q ss_pred             CEEEEEe-----------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCceEEe
Q 001362          949 TRFLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCR 1015 (1092)
Q Consensus       949 ~~la~~~-----------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~ 1015 (1092)
                      +.+.+..           .+.|.++|+.+++.+..+..++  .+.+++|++||+ +|+++. .++.|.++|..+++.+.+
T Consensus       292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~  369 (386)
T 3sjl_D          292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS  369 (386)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            9988842           1469999999999999877653  788999999997 666654 589999999999999988


Q ss_pred             ec
Q 001362         1016 IL 1017 (1092)
Q Consensus      1016 ~~ 1017 (1092)
                      +.
T Consensus       370 i~  371 (386)
T 3sjl_D          370 VN  371 (386)
T ss_dssp             EC
T ss_pred             ec
Confidence            86

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.55  E-value=1.6e-11  Score=136.06  Aligned_cols=281  Identities=12%  Similarity=0.011  Sum_probs=186.1

Q ss_pred             eecCCCceEEEEEc-CCC---cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-
Q 001362          341 DFHPVQHTLLLVGT-NVG---DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-  415 (1092)
Q Consensus       341 ~~spdg~~llasg~-~d~---~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-  415 (1092)
                      ...|++++++++-. ...   +|.++|..+++.+..                   +.....+  .++|||||++|+++. 
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~   85 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST   85 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence            44578875444432 223   889999999887653                   2222233  899999999999986 


Q ss_pred             ---------CCCEEEEEEccCCCcccceEEEc--cc---ccceeEEEEecCCCcEEEEEEe--CCCcEEEEECCCCceeE
Q 001362          416 ---------SKHIVQLYAYHGGSDARQQLEID--AH---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       416 ---------~d~~i~iwd~~~~~~~~~~~~~~--~h---~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~  479 (1092)
                               .++.|.+||..+.+.+.... +.  .+   ...-..++|+|||++  |+.+.  .++.|.++| ++++.+.
T Consensus        86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~~--l~v~n~~~~~~v~viD-~t~~~~~  161 (373)
T 2mad_H           86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNAD--LLFFQFAAGPAVGLVV-QGGSSDD  161 (373)
T ss_pred             cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCCE--EEEEecCCCCeEEEEE-CCCCEEe
Confidence                     36789999999876555331 11  00   123457899999994  55444  257899999 9999887


Q ss_pred             E-EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-----CCCCc-eEEEEEccCCCEEEEEecCCC
Q 001362          480 S-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLG-CTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       480 ~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~-i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      . +... ..   +.+.+... ..+++.+.||.+.++|. +++......     ....+ .....+.+++..++..+.   
T Consensus       162 ~~i~~~-~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---  232 (373)
T 2mad_H          162 QLLSSP-TC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---  232 (373)
T ss_pred             EEcCCC-ce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence            7 5422 21   23333322 45677888999999999 665542221     11112 223456777665554443   


Q ss_pred             CceeEEEEeCCCCe--EEEEEeecc-------ccCCceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceE
Q 001362          553 GESFLVEWNESEGA--IKRTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLL  613 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~~~~~p~~~~l~~~s~----------dg~i~iwd~~~~~~~  613 (1092)
                       .+.+.+.|..++.  .+..+....       ........+.++|+++.++++..          .+.|.++|..+++.+
T Consensus       233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv  311 (373)
T 2mad_H          233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS  311 (373)
T ss_pred             -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence             3468889987553  222222110       00123445789999998888653          357999999999999


Q ss_pred             EEEeCCCCCCCCceEEEccCCC-EEEEEe-CCCeEEEEECCCCceeee
Q 001362          614 TTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDA  659 (1092)
Q Consensus       614 ~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~  659 (1092)
                      ..+....   ....++|+|||+ +++++. .++.|.++|..+++.+..
T Consensus       312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            9987553   368999999999 677776 489999999999988766

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.55  E-value=1.3e-12  Score=141.06  Aligned_cols=238  Identities=11%  Similarity=0.056  Sum_probs=169.0

Q ss_pred             ecCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      +..+.....+++|+|+|+ +++++..++.|..|+..++  ..   .+..+...+.+++++++|+  ++++...++.|.+|
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~   95 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ   95 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence            445667788999999998 7778888899999999886  33   4556777899999999998  67777777899999


Q ss_pred             ECCCCceeEEEecC----CcCeEEEeecccCCccEEEEEec-----------------CCeEEEEEcCCCCceEEecCCC
Q 001362          471 DAVTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLYDSLGARVDYDAPG  529 (1092)
Q Consensus       471 d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~vwd~~~~~~~~~~~~~~  529 (1092)
                      |..+++........    ...++.+++.  ++|.++++.+.                 .+.|..++..  .....+....
T Consensus        96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~  171 (296)
T 3e5z_A           96 REPGGEWESIADSFEGKKLNSPNDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR  171 (296)
T ss_dssp             CSTTCCEEEEECEETTEECCCCCCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred             cCCCCcEEEEeeccCCCCCCCCCCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence            99888765443221    1245667774  57778887331                 2344444443  4444444555


Q ss_pred             CceEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeE---EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001362          530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW  605 (1092)
Q Consensus       530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iw  605 (1092)
                      .....++|+|||+.+++...    .+.|++|+.. +++.   ...+..   ....+..++++++|+..++.  ++.|.+|
T Consensus       172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~  242 (296)
T 3e5z_A          172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHFTV---EPGKTDGLRVDAGGLIWASA--GDGVHVL  242 (296)
T ss_dssp             SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEECC---SSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred             CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEeeC---CCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence            56789999999999844432    5579999986 5554   333321   23566789999999866555  7899999


Q ss_pred             ECCCCceEEEEeCCCCCCCCceEEE-ccCCCEEEEEeCCCeEEEEECCCC
Q 001362          606 DMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       606 d~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      +.. ++.+..+..+..   +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus       243 ~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~  287 (296)
T 3e5z_A          243 TPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR  287 (296)
T ss_dssp             CTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred             CCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence            986 777777775543   788999 5899999998876 4444555544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.54  E-value=1.8e-12  Score=141.94  Aligned_cols=272  Identities=8%  Similarity=0.032  Sum_probs=183.5

Q ss_pred             cccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccC
Q 001362          706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP  785 (1092)
Q Consensus       706 ~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~  785 (1092)
                      .++++.++|..+.+....................+++. +++.+++...++.+.+||..                     
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~---------------------   72 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDIN---------------------   72 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETT---------------------
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECc---------------------
Confidence            36778888876543322111000001122345667764 45555566667888887654                     


Q ss_pred             CCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-eCCeEEEEEcCCceeeEEecCCC-----CCeEEEEEcCCCCCEE
Q 001362          786 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPS-----PTATSLAFNPHDNNVI  859 (1092)
Q Consensus       786 ~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~s~~d~~~l  859 (1092)
                       +++.+....     .......++++++++++++. .++.|.+||..+++....+....     .....+++ . +++++
T Consensus        73 -t~~~~~~i~-----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly  144 (328)
T 3dsm_A           73 -TFKEVGRIT-----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY  144 (328)
T ss_dssp             -TCCEEEEEE-----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred             -ccEEEEEcC-----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence             333233321     23567899999999655555 37999999999999887765432     14556777 3 56555


Q ss_pred             EEEe-CCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC----------CcEEEEEcCCCceeeeeeeec
Q 001362          860 AIGM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----------AQIFVWDVDGWGIQTCRSLQT  928 (1092)
Q Consensus       860 asg~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D----------g~i~iwd~~~~~~~~~~~~~~  928 (1092)
                      ++.. .++.|.++|..+++.+..+... .....++++|+|++++++..+          +.|.++|..+++...  .+..
T Consensus       145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~  221 (328)
T 3dsm_A          145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF  221 (328)
T ss_dssp             EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred             EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence            5554 4889999999999988877643 345789999999988877654          789999998876433  2222


Q ss_pred             CCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeee-eccCCCCCEEEEEEec-CCCEEEEE----ECCCcE
Q 001362          929 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ-WFPISSVPISQATFSC-DCRMVFTS----FVDGTL 1002 (1092)
Q Consensus       929 ~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~-~~~~h~~~v~~l~fs~-dg~~l~t~----~~Dg~i 1002 (1092)
                      ..+     .....++|+||+++|.++.. .|.+||..+++.... +...+......++++| ++..+++.    ..+++|
T Consensus       222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V  295 (328)
T 3dsm_A          222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV  295 (328)
T ss_dssp             CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred             CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence            222     14789999999999988655 999999998876432 2222246789999999 55555555    568899


Q ss_pred             EEEEcCCCceEEeec
Q 001362         1003 SIHEASNLEVQCRIL 1017 (1092)
Q Consensus      1003 ~vwd~~~~~~~~~~~ 1017 (1092)
                      .+||.. |+.+.++.
T Consensus       296 ~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          296 YRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EEECTT-CCEEEEEE
T ss_pred             EEECCC-CCEEEEEE
Confidence            999998 98888776

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.54  E-value=7.2e-11  Score=127.60  Aligned_cols=237  Identities=11%  Similarity=-0.011  Sum_probs=163.2

Q ss_pred             ccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001362          735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1092)
Q Consensus       735 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg  814 (1092)
                      ..+..+++.++|..+++...++.+..|+...                       . .....++  .....+..++++++|
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----------------------~-~~~~~~~--~~~~~~~~i~~~~~g  110 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGRITKKG-----------------------I-IKEYTLP--NPDSAPYGITEGPNG  110 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTS-----------------------C-EEEEECS--STTCCEEEEEECTTS
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEEECCCC-----------------------c-EEEEeCC--CcCCCceeeEECCCC
Confidence            3467788889998777766677777776321                       1 1111111  134567899999999


Q ss_pred             CEEEEEe-CCeEEEEEcCCceeeEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe-eccccCCeEE
Q 001362          815 AYLFSAS-GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-LEGHSKRVTG  891 (1092)
Q Consensus       815 ~~l~~~s-dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~  891 (1092)
                      +++++.. ++.|.+||. +++.... .......+..+++++ +++++++...++.|..||. +++.... +..+...+.+
T Consensus       111 ~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~  187 (299)
T 2z2n_A          111 DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVG  187 (299)
T ss_dssp             CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred             CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCccee
Confidence            8888765 588999998 5544332 233456789999999 7888877777889999999 6665432 3345567889


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceee
Q 001362          892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCL  970 (1092)
Q Consensus       892 l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~  970 (1092)
                      +++.++|+++++...++.|.+||. +++...   ..... ..   ..+.+++++++|++.++. .++.|..||. +++..
T Consensus       188 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~-~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  258 (299)
T 2z2n_A          188 ITKGNDDALWFVEIIGNKIGRITT-SGEITE---FKIPT-PN---ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE  258 (299)
T ss_dssp             EEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECSS-TT---CCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE
T ss_pred             EEECCCCCEEEEccCCceEEEECC-CCcEEE---EECCC-CC---CCceeEEECCCCCEEEeccCCceEEEECC-CCceE
Confidence            999999998887777888999999 554322   21111 11   258899999999977775 5688999998 45433


Q ss_pred             eeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001362          971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       971 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
                      ......+...+.++++ ++|+++++.+ .+.+..++..+++
T Consensus       259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          259 EYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred             EEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence            2223345678999999 9998777654 5677778877654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=1.4e-08  Score=125.64  Aligned_cols=537  Identities=11%  Similarity=0.036  Sum_probs=309.5

Q ss_pred             CCceEEeecCCCc-eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC--CCCEE
Q 001362          335 SSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLL  411 (1092)
Q Consensus       335 ~~V~~v~~spdg~-~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~l  411 (1092)
                      ..|.++...++|. .+  .|+.++.+..||..+++.... ..   ...      ..  ..-....|.++...+  +|.+.
T Consensus        66 n~I~~i~~d~~g~~lW--igt~~~Gl~~~d~~~~~f~~~-~~---~~~------~~--~~l~~~~i~~i~~d~~~~g~lw  131 (781)
T 3v9f_A           66 NELNEVYTDPVQPVIW--IATQRAGLNAYNYETQSFSVY-QY---NPE------DP--QSLITNDVTHITSSVQAGKGLW  131 (781)
T ss_dssp             SCEEEEEECSSSSEEE--EEESSSCEEEEETTTTEEEEE-CC---CTT------CS--SSCSCSCEEEEEECSSTTSEEE
T ss_pred             cccceEEEcCCCCEEE--EEeCCCCcceECCCCCeEEee-cc---ccC------CC--CCcccCcceEEEecCccCCCEE
Confidence            3699999999997 43  355555799999887653321 00   000      00  000124688998887  66544


Q ss_pred             EEEeCCCEEEEEEccCCCcccceEEEcc------cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe---
Q 001362          412 GVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE---  482 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~~~~------h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~---  482 (1092)
                       .++.++-|..||..+++..    .+..      ....|.++...++|.   +..++.++-|..||..+++...-..   
T Consensus       132 -i~t~~~gl~~~~~~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~  203 (781)
T 3v9f_A          132 -VCTYYRGIEYLDIATGKFT----HYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQ  203 (781)
T ss_dssp             -EEESSSCEEEEETTTTEEE----EESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC---
T ss_pred             -EEECCCCeeEEECCCCeEE----eeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCC
Confidence             4553334888998765321    1211      124588888888876   4446656568999988775432111   


Q ss_pred             ----cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEccCCCEEEEEecCC
Q 001362          483 ----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       483 ----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                          .....|.++..  +.++.+. .|+.+ -+.+||..+.......       ......|.++...++|...+....  
T Consensus       204 ~~~~l~~~~i~~i~~--d~~g~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~--  277 (781)
T 3v9f_A          204 NPNSLPGNDVRCIYK--DTNGNIW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATEL--  277 (781)
T ss_dssp             -----CCSSEEEEEE--CTTCCEE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESS--
T ss_pred             CcccCCCCceeEEEE--cCCCCEE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCC--
Confidence                11345777765  3455444 45555 5788887654332211       112346889988888876654321  


Q ss_pred             CCceeEEEEeCCCCeEEEEEe-----------eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe---
Q 001362          552 EGESFLVEWNESEGAIKRTYQ-----------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---  617 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~-----------~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---  617 (1092)
                         +-|.++|..++.......           ........|.++...++|. +-.|+.++-|..++..++.......   
T Consensus       278 ---~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~  353 (781)
T 3v9f_A          278 ---NGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPT  353 (781)
T ss_dssp             ---SCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----
T ss_pred             ---CCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcc
Confidence               128899988765433221           1112246789999888875 6667777778999987655433211   


Q ss_pred             ----CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCC
Q 001362          618 ----AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED  693 (1092)
Q Consensus       618 ----~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1092)
                          ..-....|.+++..++|. |.+|+.++-|..|+..++... .+..                               
T Consensus       354 ~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~-------------------------------  400 (781)
T 3v9f_A          354 QMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI-YNKE-------------------------------  400 (781)
T ss_dssp             CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE-CC---------------------------------
T ss_pred             ccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE-EccC-------------------------------
Confidence                011123477788777776 556676666888876533111 0000                               


Q ss_pred             CCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcc
Q 001362          694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE  773 (1092)
Q Consensus       694 ~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~  773 (1092)
                                                         +.......|.++...++|...+ ++.++-+..++....       
T Consensus       401 -----------------------------------~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~-------  437 (781)
T 3v9f_A          401 -----------------------------------NRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK-------  437 (781)
T ss_dssp             --------------------------------------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC-------
T ss_pred             -----------------------------------CCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC-------
Confidence                                               0001234577888877887444 554444555543221       


Q ss_pred             cccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCC-----CCCeEE
Q 001362          774 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP-----SPTATS  848 (1092)
Q Consensus       774 ~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~-----~~~i~~  848 (1092)
                                     . ....... ......|.++...++|.+.+... +.+..+|..+++........     ...|.+
T Consensus       438 ---------------~-~~~~~~~-~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~  499 (781)
T 3v9f_A          438 ---------------K-FQIIELE-KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRS  499 (781)
T ss_dssp             ---------------E-EEECCST-TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred             ---------------c-EEEeccC-CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEE
Confidence                           1 1111000 01346788999888887666554 67899998876554333222     357899


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc---ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001362          849 LAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS  925 (1092)
Q Consensus       849 l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~  925 (1092)
                      ++..+ ++.+.+ |+.++-+..||..+++...-...   ....|.++...++|.+.++. .+|.|..||..+++...   
T Consensus       500 i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~~---  573 (781)
T 3v9f_A          500 IAQDS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQV---  573 (781)
T ss_dssp             EEECT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCEE---
T ss_pred             EEEcC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEEE---
Confidence            99988 676555 56544488898877653322111   24578999999898876654 47754888887755322   


Q ss_pred             eecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeecc--C---CCCCEEEEEEecCCCEEEEEECCC
Q 001362          926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--I---SSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus       926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~--~---h~~~v~~l~fs~dg~~l~t~~~Dg 1000 (1092)
                      .....+-.  ...|.++...++|.+.+++.+ .|..++..+++... +..  +   ..-...++...+||++++ |+.+|
T Consensus       574 ~~~~~gl~--~~~i~~i~~d~~g~lW~~t~~-Gl~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G  648 (781)
T 3v9f_A          574 FQRKEGLP--NTHIRAISEDKNGNIWASTNT-GISCYITSKKCFYT-YDHSNNIPQGSFISGCVTKDHNGLIYF-GSING  648 (781)
T ss_dssp             ECGGGTCS--CCCCCEEEECSSSCEEEECSS-CEEEEETTTTEEEE-ECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE
T ss_pred             ccccCCCC--CceEEEEEECCCCCEEEEcCC-ceEEEECCCCceEE-ecccCCccccccccCceEECCCCEEEE-ECCCc
Confidence            22222221  135788999999988777644 47778877654332 111  1   111234677788887665 66777


Q ss_pred             cEEEEEcCC
Q 001362         1001 TLSIHEASN 1009 (1092)
Q Consensus      1001 ~i~vwd~~~ 1009 (1092)
                       +..++...
T Consensus       649 -l~~f~p~~  656 (781)
T 3v9f_A          649 -LCFFNPDI  656 (781)
T ss_dssp             -EEEECSCC
T ss_pred             -eEEEChhh
Confidence             55566543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.52  E-value=2.3e-12  Score=136.40  Aligned_cols=246  Identities=9%  Similarity=0.000  Sum_probs=175.0

Q ss_pred             CCCEEEEEe-CCeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecccc-CCe
Q 001362          813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRV  889 (1092)
Q Consensus       813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V  889 (1092)
                      .+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| ++++++  +.++.|..||. +|+.+..+..+. ..+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            456777776 6999999999999999998766 4789999999 888888  45788999999 899999988653 578


Q ss_pred             EEEEEcCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecC-CCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCC
Q 001362          890 TGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE  966 (1092)
Q Consensus       890 ~~l~~spdg~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~  966 (1092)
                      .++.+.+||+++++.+. ++.|..+|.+ ++......+... .+..   .....+++.++|+++++. .++.|..||.. 
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-  154 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPN-  154 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence            89999999999999887 7777777763 443322222111 1111   135567889999999985 67899999998 


Q ss_pred             ceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEE
Q 001362          967 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1046 (1092)
Q Consensus       967 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l 1046 (1092)
                      |+.+.++..  ...+.++.+.++|..+++++.+++|..+|..+|+.+.++..... +..   .-..+..++..+ ++..+
T Consensus       155 G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~---~l~~~~~~~~~~-~G~i~  227 (276)
T 3no2_A          155 GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-EGV---QLFFVAQLFPLQ-NGGLY  227 (276)
T ss_dssp             SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-BSC---CCSEEEEEEECT-TSCEE
T ss_pred             CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-CCc---cccccccceEcC-CCCEE
Confidence            888877543  24566788899999999998888999999999999988863221 110   112345566676 46766


Q ss_pred             EEEeCC--------CcEEEEeCC-CCCCccccCCCCC
Q 001362         1047 AVGLTN--------GEVYVIEPN-EPGDTWAVLPPDE 1074 (1092)
Q Consensus      1047 ~~~~~d--------g~v~~w~~~-~~~~~~~~~~~~~ 1074 (1092)
                      ++.+..        +..+++++. +.+-.|......+
T Consensus       228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~  264 (276)
T 3no2_A          228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVK  264 (276)
T ss_dssp             EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTT
T ss_pred             EEeccCccccccccCCceEEEECCCCCEEEEecCccc
Confidence            666421        233566663 3333465444333

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.51  E-value=4.1e-13  Score=163.85  Aligned_cols=250  Identities=9%  Similarity=-0.072  Sum_probs=163.4

Q ss_pred             cCCCCceEEeecCCCceEEEEE----cCCCcEEEEecCCCCee-EEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg----~~d~~v~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      +|...+..++|||||++++.+.    +.+.+|++||+.+|+.+ .. .                 +.+.  ....++|||
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wsp  177 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTP  177 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECT
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEec
Confidence            5666799999999999644443    33467999999999865 21 0                 1111  125789999


Q ss_pred             CCCEEEEEeCCCE-------------EEEEEccCCCccc-ceEEEcccccceeEEEEecCCCcEEEEEEeCCC----cEE
Q 001362          407 DGSLLGVAYSKHI-------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIK  468 (1092)
Q Consensus       407 dg~~las~~~d~~-------------i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~----~i~  468 (1092)
                      ||+.|++++.+..             |++|++.++..-. .......|...+..+.|||||++  |+.++.++    .|.
T Consensus       178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~  255 (695)
T 2bkl_A          178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVY  255 (695)
T ss_dssp             TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEE
T ss_pred             CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEE
Confidence            9999999988765             9999999875321 11122345567889999999995  44444344    677


Q ss_pred             EEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCC-CCceEEEEEccCC
Q 001362          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAP-GLGCTRMAYSANG  541 (1092)
Q Consensus       469 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~---~~~~~~~-~~~i~~~~~s~dg  541 (1092)
                      +||..+++ ...+..+...+....+ +  ++.+++...   .++.|.+||+.+...   ...+... ...+..++++ ++
T Consensus       256 ~~~~~~~~-~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~  330 (695)
T 2bkl_A          256 WKRPGEKD-FRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG  330 (695)
T ss_dssp             EECTTCSS-CEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT
T ss_pred             EEcCCCCc-eEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC
Confidence            77765554 4455556555555554 2  444444444   257899999987653   3333333 4467788887 56


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCceE
Q 001362          542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQLL  613 (1092)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s----~dg~i~iwd~~~~~~~  613 (1092)
                      ..+++...  ++...|++++.. +.....+..+.  ...+..+.++|+++.++...    ..++|++||+.+++..
T Consensus       331 ~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~  401 (695)
T 2bkl_A          331 HLSLEYLK--DATSEVRVATLK-GKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE  401 (695)
T ss_dssp             EEEEEEEE--TTEEEEEEEETT-CCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             EEEEEEEE--CCEEEEEEEeCC-CCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence            66666554  234456666654 55555555442  25677788899988776432    3478999999988743

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.49  E-value=1.9e-12  Score=159.00  Aligned_cols=247  Identities=9%  Similarity=0.050  Sum_probs=164.0

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCC-----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc--
Q 001362          394 DPGVSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--  466 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--  466 (1092)
                      +|...+..++|||||++||.++.+     ..|++||+.+|+.+..    ..+...+..++|+|| +  .|+.++.|+.  
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~  232 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE  232 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence            344578899999999999988654     4699999999875431    112223468899999 8  4555555443  


Q ss_pred             ------------EEEEECCCCce--eEEEec--CCcCeEEEeecccCCccEEEEEecCC-----eEEEEEcCCC--CceE
Q 001362          467 ------------IKVWDAVTGSR--TYSFEG--HGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL--GARV  523 (1092)
Q Consensus       467 ------------i~vwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~--~~~~  523 (1092)
                                  |++|++.++..  ...+..  +...+..+.|  ++||++|+..+.++     .|.+||+.++  ....
T Consensus       233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  310 (741)
T 1yr2_A          233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT  310 (741)
T ss_dssp             ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred             ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence                        89999988763  223332  3335677777  56888888777554     7999999876  3133


Q ss_pred             EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC--eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc
Q 001362          524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV  601 (1092)
Q Consensus       524 ~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~  601 (1092)
                      .+..+...+... ++|+|+.|+..+..+.....|++||+.++  +....+..+.   ..+..+.+. ++..+++...|+.
T Consensus       311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~  385 (741)
T 1yr2_A          311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAK  385 (741)
T ss_dssp             EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTE
T ss_pred             EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCE
Confidence            343343344444 35999999888765444678999999885  3333443333   456677777 5566777888888


Q ss_pred             EEEEECC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCc
Q 001362          602 IKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN  655 (1092)
Q Consensus       602 i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~  655 (1092)
                      .++|.+. ++.....+..+. ...+..++++|+++.++....    .++|++||+.+++
T Consensus       386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            7777554 456666665432 234677889999886664432    4789999998775

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.49  E-value=2.9e-12  Score=136.40  Aligned_cols=240  Identities=8%  Similarity=-0.044  Sum_probs=166.3

Q ss_pred             CceEEeecCCCceEEE-EEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          336 SPMSMDFHPVQHTLLL-VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       336 ~V~~v~~spdg~~lla-sg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ...+++++|+|+ +++ +...++.|.+||..++.....                   ...+...+.+++++++|+++++.
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~   84 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD   84 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence            778999999998 666 556778999999766543211                   11233567889999999966665


Q ss_pred             eCCCEEEEEEccCCCcccceEEEc-ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEee
Q 001362          415 YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  493 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~  493 (1092)
                      . ++.|.+||..++...    .+. .....+..+++.++|+  ++++...++.|.+|+..+.............+..+++
T Consensus        85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~  157 (270)
T 1rwi_B           85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV  157 (270)
T ss_dssp             T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred             C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence            5 889999998765422    122 2235688999999998  6777777889999986655443322233345677887


Q ss_pred             cccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee
Q 001362          494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG  573 (1092)
Q Consensus       494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~  573 (1092)
                      .+  ++.++++...++.|.+||................+..++++++|...++...    ++.|.+|+..+.........
T Consensus       158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~~~~~  231 (270)
T 1rwi_B          158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTVLPFT  231 (270)
T ss_dssp             CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEECCCC
T ss_pred             eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCcceeeccC
Confidence            54  6677777777899999998766544333333356889999999966665532    45699999876544332211


Q ss_pred             ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001362          574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       574 ~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~  611 (1092)
                      .   ...+..++++++++.+++...++.|++++....+
T Consensus       232 ~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          232 G---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             S---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             C---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            1   2568899999999988888889999999987654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.47  E-value=2e-10  Score=124.15  Aligned_cols=281  Identities=10%  Similarity=0.022  Sum_probs=191.5

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001362          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  410 (1092)
                      ......+.+++++++|+ +.++...++.|.+||.. ++.... .                 +..+...+..+++.++|++
T Consensus        16 ~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~l   75 (300)
T 2qc5_A           16 SIPDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF-E-----------------VPTPDAKVMCLIVSSLGDI   75 (300)
T ss_dssp             SSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE-E-----------------CSSTTCCEEEEEECTTSCE
T ss_pred             CCCCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE-E-----------------CCCCCCcceeEEECCCCCE
Confidence            33445889999999998 66666677899999987 554321 1                 2234467999999999998


Q ss_pred             EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE-EecCCcCeE
Q 001362          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVY  489 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~  489 (1092)
                      .++...++.|..||.. ++. . ...+......+.++++.++|.  ++++...++.|..||.. ++.... +......+.
T Consensus        76 ~v~~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~  149 (300)
T 2qc5_A           76 WFTENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA  149 (300)
T ss_dssp             EEEETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred             EEEecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence            8877778889999987 543 2 112333446789999999998  67777668899999987 655422 232345677


Q ss_pred             EEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001362          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1092)
Q Consensus       490 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1092)
                      .+++.  +++.+.++...++.|..++. .++... ........+..+++.++|+..++...    .+.|..+|. +++..
T Consensus       150 ~i~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~  221 (300)
T 2qc5_A          150 FITLG--SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEIS  221 (300)
T ss_dssp             EEEEC--TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEE
T ss_pred             eEEEC--CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEE
Confidence            88874  46677776666888999988 333322 22233456889999999976665432    446999998 55544


Q ss_pred             EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001362          569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  648 (1092)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  648 (1092)
                      ......  ....+.++++.++++..++...++.|..|+. ++... .+........+.+++++++|++.++.. . .|..
T Consensus       222 ~~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~  295 (300)
T 2qc5_A          222 EYDIPT--PNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGK  295 (300)
T ss_dssp             EEECSS--TTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEE
T ss_pred             EEECCC--CCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEE
Confidence            321111  1356889999999986666666789999998 45443 333332334578999999998665544 4 6666


Q ss_pred             EEC
Q 001362          649 LET  651 (1092)
Q Consensus       649 w~~  651 (1092)
                      ++.
T Consensus       296 ~~p  298 (300)
T 2qc5_A          296 LNL  298 (300)
T ss_dssp             EEE
T ss_pred             eCC
Confidence            654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.47  E-value=2.3e-11  Score=134.77  Aligned_cols=205  Identities=14%  Similarity=0.091  Sum_probs=143.4

Q ss_pred             eEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe-
Q 001362          806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-  881 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~-  881 (1092)
                      ..++|+|||+++.++.   ++.|.+.|+.+++.+.++....    +....|++.+.+++.+.||.+.+.+..+++.... 
T Consensus       180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~  255 (426)
T 3c75_H          180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTN  255 (426)
T ss_dssp             GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred             ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence            4568899999888875   3689999999999988876432    1334442446667777888888888866665432 


Q ss_pred             ---eccccCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc-C---CCCCceEEEEecCCCEEEE
Q 001362          882 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM-T---LAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       882 ---l~~h~~~V-~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~---~~~~v~~l~~s~dg~~la~  953 (1092)
                         +.....++ ..+.|+++++.++..+..+.|.+.|+.+................ .   .......++++||++.+.+
T Consensus       256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV  335 (426)
T 3c75_H          256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL  335 (426)
T ss_dssp             CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred             eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence               22112222 23578999998888888899999999765432211111110000 0   0012334799999998777


Q ss_pred             Ee-----------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCceEEee
Q 001362          954 VH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       954 ~~-----------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
                      ..           .+.|.++|..+.+.+..+..+  ....++.|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus       336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            42           247999999999999887544  3588999999999 888887 5899999999999999887

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.47  E-value=8e-12  Score=132.92  Aligned_cols=240  Identities=10%  Similarity=-0.057  Sum_probs=166.6

Q ss_pred             cEEEEEECCCCCEEE-EEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001362          398 SVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1092)
Q Consensus       398 ~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  476 (1092)
                      ...+++++++|++++ +.+.++.|.+|+..++....   ....+...+.+++++++|+  ++++.. ++.|.+||..++.
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence            788999999999777 44678899999987653211   1123335688999999998  566655 8899999977654


Q ss_pred             eeEEEe-cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001362          477 RTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  555 (1092)
Q Consensus       477 ~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~  555 (1092)
                      . ..+. .....+..+++.+  ++.++++...++.|.+|+..+.............+..++++++|+.+++...    .+
T Consensus        99 ~-~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~  171 (270)
T 1rwi_B           99 Q-TVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN  171 (270)
T ss_dssp             C-EECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GT
T ss_pred             E-eeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CC
Confidence            3 3332 2335678888854  6677777778899999976554443332223345778999999986665432    45


Q ss_pred             eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC
Q 001362          556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT  635 (1092)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  635 (1092)
                      .|.+||..++..........   ..+..++++++|..+++...++.|.+|+..+..... ... .+...+..++++++|+
T Consensus       172 ~i~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~  246 (270)
T 1rwi_B          172 RVVKLEAESNNQVVLPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRT  246 (270)
T ss_dssp             EEEEECTTTCCEEECCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCC
T ss_pred             EEEEEecCCCceEeecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCC
Confidence            69999988766543322222   568899999999766777678899999987655433 221 2224578999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCc
Q 001362          636 LLAVIANENRIKILETPESN  655 (1092)
Q Consensus       636 ~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      ++++...++.|++++....+
T Consensus       247 l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          247 VYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EEEEEGGGTEEEEECCCGGG
T ss_pred             EEEEECCCCEEEEEcCCCcc
Confidence            88888889999999987553

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.45  E-value=1.2e-11  Score=137.06  Aligned_cols=281  Identities=11%  Similarity=0.093  Sum_probs=191.6

Q ss_pred             CCCceEEEEEcCC----CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe----
Q 001362          344 PVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY----  415 (1092)
Q Consensus       344 pdg~~llasg~~d----~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~----  415 (1092)
                      |++++++++...+    +.|.+.|..+++.+.....                   -..+  .+++||||++|+++.    
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-------------------G~~P--gia~SpDgk~lyVan~~~~  140 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-------------------GFLP--HPVAAEDGSFFAQASTVFE  140 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-------------------CSSC--EEEECTTSSCEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-------------------CCCC--ceEECCCCCEEEEEecccc
Confidence            5666666665544    7999999999988865221                   2234  799999999998886    


Q ss_pred             ------CCCEEEEEEccCCCcccceEEEc--c---cccceeEEEEecCCCcEEEEEEe--CCCcEEEEECCCCceeEEEe
Q 001362          416 ------SKHIVQLYAYHGGSDARQQLEID--A---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       416 ------~d~~i~iwd~~~~~~~~~~~~~~--~---h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~~~~  482 (1092)
                            .++.|.++|..+++.+..+. +.  .   .......++|+|||++  ++.+.  .++.|.+.|+.+++.+.++.
T Consensus       141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~  217 (426)
T 3c75_H          141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD  217 (426)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence                  36789999999987665432 22  0   0123457899999995  44444  36889999999999998886


Q ss_pred             cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE----ecCCCCc-eEEEEEccCCCEEEEEecCCCCceeE
Q 001362          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                      ....    ....+... ..+++.+.||.+.+.+....+....    +.....+ ...+.+++++..++....    .+.+
T Consensus       218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V  288 (426)
T 3c75_H          218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI  288 (426)
T ss_dssp             CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred             cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence            4221    12222222 5667778888888888854443321    1111222 123567899888777654    3569


Q ss_pred             EEEeCCCCeEE--EEEeec-----c--ccCCceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceEEEEeC
Q 001362          558 VEWNESEGAIK--RTYQGL-----Q--LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       558 ~iwd~~~~~~~--~~~~~~-----~--~~~~~v~~~~~~p~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~  618 (1092)
                      ++.|..++...  ..+...     .  ........++++|+++++++...          .+.|.++|..+.+.+..+..
T Consensus       289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v  368 (426)
T 3c75_H          289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL  368 (426)
T ss_dssp             EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence            99998655432  111110     0  00011223689999998887642          35799999999999999876


Q ss_pred             CCCCCCCceEEEccCCC-EEEEEe-CCCeEEEEECCCCceeeec
Q 001362          619 GGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAA  660 (1092)
Q Consensus       619 ~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~  660 (1092)
                      ..   ....++|+|||+ ++++.. .++.|.++|..+.+.+..+
T Consensus       369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            53   257899999999 888887 5899999999999888775

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.42  E-value=9.3e-12  Score=152.92  Aligned_cols=248  Identities=11%  Similarity=0.008  Sum_probs=158.3

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~----~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +|...+..++|||||++++.+.+.+|    .|++||+.+|+.+.. .                 +  +...+..++||||
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-----------------~--~~~~~~~~~wspD  219 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-----------------L--KWVKFSGLAWLGN  219 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-----------------E--EEEESCCCEESTT
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-----------------C--CCceeccEEEECC
Confidence            34447889999999996544443333    599999999987642 0                 0  1122357899999


Q ss_pred             CCEEEEEeCCCE--------------EEEEEccCCCcccceEEEc--ccccceeEEEEecCCCcEEEEEEeC-----CCc
Q 001362          408 GSLLGVAYSKHI--------------VQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGD-----DKT  466 (1092)
Q Consensus       408 g~~las~~~d~~--------------i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~l~l~s~~~-----d~~  466 (1092)
                       +.|+.++.++.              |++|++.++...... .+.  .+...+..+.|||||++  |+..+.     ...
T Consensus       220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~  295 (741)
T 1yr2_A          220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQP-VFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNT  295 (741)
T ss_dssp             -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEE-EECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCE
T ss_pred             -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEE-EeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcce
Confidence             99999876543              899999876532111 222  33345889999999995  444443     348


Q ss_pred             EEEEECCCC--ceeEEEecCCcCeEEEeecccCCccEEEEEec----CCeEEEEEcCCCC-c-eEEecCCCCceEEEEEc
Q 001362          467 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-A-RVDYDAPGLGCTRMAYS  538 (1092)
Q Consensus       467 i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~-~-~~~~~~~~~~i~~~~~s  538 (1092)
                      |++||+.++  ++...+..+...+....+   +++..|+..+.    ++.|.+||+.+.. . ...+..+...+..++++
T Consensus       296 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~  372 (741)
T 1yr2_A          296 VHVARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA  372 (741)
T ss_dssp             EEEEEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE
T ss_pred             EEEEECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE
Confidence            999999887  425566556555544432   35567776665    3459999988742 2 33334444456667776


Q ss_pred             cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCce
Q 001362          539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL  612 (1092)
Q Consensus       539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s----~dg~i~iwd~~~~~~  612 (1092)
                       ++..+++...  ++...|++++.. +...+.+..+.  ...+..+.++|+++.++...    ..++|++||+.+++.
T Consensus       373 -~~~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          373 -GNRLFASYIH--DAKSQVLAFDLD-GKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             -BTEEEEEEEE--TTEEEEEEEETT-SCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             -CCEEEEEEEE--CCEEEEEEEeCC-CCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence             4455555544  335556777764 55555555432  35788899999987666432    447899999988873

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.39  E-value=1.2e-10  Score=126.95  Aligned_cols=250  Identities=13%  Similarity=0.098  Sum_probs=165.0

Q ss_pred             ccCCCCceEEeecCCCceEEEE-------EcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          331 IEGSSSPMSMDFHPVQHTLLLV-------GTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llas-------g~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      .+.-....+++|+++|+ ++++       +..++.|.+||..+++.... ..              ....++...+..++
T Consensus        14 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~--------------~~~~~~~~~~~~i~   77 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CK--------------PEVNGYGGIPAGCQ   77 (314)
T ss_dssp             ECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE-EC--------------CEETTEECCEEEEE
T ss_pred             hccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Ee--------------cccCCCCCCCceEE
Confidence            44444788999999997 6666       56678999999988875421 00              00122446789999


Q ss_pred             ECCC-CCEEEEEeCCCEEEEEEccCCCcccc-eEEEcc-cccceeEEEEecCCCcEEEEEEeCC---------------C
Q 001362          404 WSPD-GSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCGDD---------------K  465 (1092)
Q Consensus       404 ~spd-g~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d---------------~  465 (1092)
                      ++++ |+++++.. .+.|.+||.. ++.... .....+ ....+.++++.++|+  ++++...+               +
T Consensus        78 ~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~  153 (314)
T 1pjx_A           78 CDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             ECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             EecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCC
Confidence            9999 76555544 4469999988 653211 000011 224588999999998  56665544               5


Q ss_pred             cEEEEECCCCceeEEEecCCcCeEEEeec--ccCCccEE-EEEecCCeEEEEEcC-CCC-----ceEEecCCC-CceEEE
Q 001362          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHFI-FSISVDGKIKAWLYD-SLG-----ARVDYDAPG-LGCTRM  535 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l-~s~~~dg~i~vwd~~-~~~-----~~~~~~~~~-~~i~~~  535 (1092)
                      .|..||.. ++..... .+......++++  .+++++.+ ++...++.|.+|+++ .+.     ....+..+. .....+
T Consensus       154 ~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i  231 (314)
T 1pjx_A          154 SIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             EEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             eEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence            67777765 5544332 333445777775  11566555 444568899999986 222     112223332 567889


Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 001362          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK  609 (1092)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-s~dg~i~iwd~~~  609 (1092)
                      +++++|+..++...    ++.|.+||..+++.+..+..+.   ..+.+++++|+++.|+++ ..++.|..|++..
T Consensus       232 ~~d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          232 DFDEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEBTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EECCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            99999988777643    4469999998787777666544   678999999999966555 4567899998764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.37  E-value=1.6e-09  Score=116.87  Aligned_cols=243  Identities=12%  Similarity=0.027  Sum_probs=168.8

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +......+.++++.++|+..++...++.|.+||.. ++...  ..+..+...+.++++.++|.  ++++...++.|..||
T Consensus        15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d   89 (300)
T 2qc5_A           15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE--FEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLS   89 (300)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred             cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE--EECCCCCCcceeEEECCCCC--EEEEecCCCeEEEEC
Confidence            33456788999999999988877778899999988 54221  12333446789999999998  667666678899999


Q ss_pred             CCCCceeE-EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce-EEecCCCCceEEEEEccCCCEEEEEec
Q 001362          472 AVTGSRTY-SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       472 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      .. ++... .+......+..+++.  +++.++++...++.|..+|.. ++.. .........+..+++.++|+..++...
T Consensus        90 ~~-g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  165 (300)
T 2qc5_A           90 KK-GGFTEYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ  165 (300)
T ss_dssp             TT-SCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred             CC-CCeEEecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC
Confidence            87 65432 222234567888875  466777777778899999887 3333 223334457889999999996555432


Q ss_pred             CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001362          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1092)
                          .+.|..+|. +++... +.... ....+..+++.+++...++....+.|.+|+. +++.... ........+.+++
T Consensus       166 ----~~~i~~~~~-~g~~~~-~~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~  236 (300)
T 2qc5_A          166 ----NNSIGRITN-TGKLEE-YPLPT-NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIPTPNARPHAIT  236 (300)
T ss_dssp             ----TTEEEEECT-TCCEEE-EECSS-TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEE
T ss_pred             ----CCeEEEECC-CCcEEE-eeCCC-CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCCCCCCceEEE
Confidence                456999998 565543 32211 1256889999999876666666778999998 5554433 2222234578899


Q ss_pred             EccCCCEEEEEeCCCeEEEEECC
Q 001362          630 FNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       630 ~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      ++++|++.++...++.|..|+..
T Consensus       237 ~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          237 AGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             ECSTTCEEEEETTTTEEEEECTT
T ss_pred             ECCCCCEEEeccCCCeEEEECCC
Confidence            99999877666667899999983

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.36  E-value=4.1e-10  Score=126.65  Aligned_cols=242  Identities=12%  Similarity=0.012  Sum_probs=164.1

Q ss_pred             CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ...+.++|+|+|+ |+++...++.|++||..++.....                   ... ..... ++|+|+++.|+++
T Consensus       131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~  188 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI  188 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred             CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence            4688999999998 788877789999999988765532                   112 22333 9999999999998


Q ss_pred             eCCC--EEEEEEccCCCcccceEEEcc-cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE----EecCCcC
Q 001362          415 YSKH--IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----FEGHGAP  487 (1092)
Q Consensus       415 ~~d~--~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~----~~~~~~~  487 (1092)
                      ..++  .|.+|+..++........+.. +...+.+++++|++..  |+.+..++.|+.||..++.....    ..++...
T Consensus       189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~  266 (409)
T 3hrp_A          189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT  266 (409)
T ss_dssp             BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred             ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence            8765  799999887654332111112 4556889999995553  44466788999999987764322    2222222


Q ss_pred             e--EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC---------------CCceEEEEEccCCCEEEEEecC
Q 001362          488 V--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---------------GLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       488 v--~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---------------~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      -  ..++|++. ++.++++...++.|+.|+.+..  ...+.+.               -.....++++++|+.+++-.  
T Consensus       267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~--  341 (409)
T 3hrp_A          267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG--  341 (409)
T ss_dssp             SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred             CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence            2  27888653 3567777778899999987654  2222221               13478899999999555543  


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeecc------------ccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001362          551 KEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~  607 (1092)
                       .++..|+.|+..++.. ..+.++.            ........+++++++..+++-..++.|+.+++
T Consensus       342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence             0266799999877764 4444431            00245789999999877777777888887765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.35  E-value=2e-10  Score=125.20  Aligned_cols=245  Identities=9%  Similarity=0.064  Sum_probs=163.5

Q ss_pred             cEEEEEEecCCcEEEE-------eecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCC-CCCCCCCeeE
Q 001362          736 KISRLTYNNGGQAIFA-------LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT-DSNSQEAVPC  807 (1092)
Q Consensus       736 ~i~~l~~s~~g~~l~~-------~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~-~~~~~~~v~~  807 (1092)
                      ...+++|+++|..+++       ...++.|.+|+....                      ... ....+ ..++...+.+
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g----------------------~~~-~~~~~~~~~~~~~~~~   75 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG----------------------KKT-VICKPEVNGYGGIPAG   75 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC----------------------CEE-EEECCEETTEECCEEE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC----------------------cEE-EEEecccCCCCCCCce
Confidence            4568899999987777       466777887764332                      111 11000 0013356889


Q ss_pred             EEEecC-CCEEEEEeCCeEEEEEcCCceeeEE-ecC----CCCCeEEEEEcCCCCCEEEEEeCC---------------C
Q 001362          808 FALSKN-DAYLFSASGGVISLYIVMTFKTILT-IMP----PSPTATSLAFNPHDNNVIAIGMDD---------------S  866 (1092)
Q Consensus       808 ~~~s~d-g~~l~~~sdg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~s~~d~~~lasg~~d---------------g  866 (1092)
                      ++++++ |+++++..++.|.+||.. ++.... ...    +...+.++++++ +++++++...+               +
T Consensus        76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~  153 (314)
T 1pjx_A           76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence            999999 776666656689999988 665432 221    123578999999 78887776655               5


Q ss_pred             cEEEEEcCCceeeEeeccccCCeEEEEEc----CCCCEEE-EEeCCCcEEEEEcC-CCceeeeeeeecCCCCcCCCCCce
Q 001362          867 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILV-SSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSET  940 (1092)
Q Consensus       867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s----pdg~~l~-s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~  940 (1092)
                      .|..|+.. ++... +..+......++|+    |+++.|. +...++.|.+|+++ .++...........+...  ..+.
T Consensus       154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p~  229 (314)
T 1pjx_A          154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGAD  229 (314)
T ss_dssp             EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEEE
T ss_pred             eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCCC
Confidence            67777766 55433 33344567889999    9997654 44567899999987 444322223333332210  1467


Q ss_pred             EEEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEE-ECCCcEEEEEcCCC
Q 001362          941 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1010 (1092)
Q Consensus       941 ~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~-~~Dg~i~vwd~~~~ 1010 (1092)
                      .++++++|+++++. .++.|.+||..+++.+..+ ..+...+.+++|++||+.|+++ ..++.|..|++...
T Consensus       230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            89999999988874 6789999999877766553 3455789999999999955544 45678999998753

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.34  E-value=2.6e-10  Score=124.48  Aligned_cols=256  Identities=9%  Similarity=0.040  Sum_probs=170.0

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCce-----------eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 001362          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFK-----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN  872 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd  872 (1092)
                      .+..+++++...++++|+...+.+|++++.+           ..... .+.. |+.++|   |+.+|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence            6889999999999999998888889976544           11222 3555 999999   57889988 889999999


Q ss_pred             cCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEE
Q 001362          873 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL  952 (1092)
Q Consensus       873 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la  952 (1092)
                      +.+.........|..++.++.+.+..  +++++.||.|.+||++++....   +.         ..|++++|||+| ..+
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~---------~~Vs~v~WSpkG-~~v  177 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LA---------QNVTSFDVTNSQ-LAV  177 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EE---------ESEEEEEECSSE-EEE
T ss_pred             chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---cc---------CCceEEEEcCCc-eEE
Confidence            98876666677788889988887653  8889999999999999765321   11         259999999999 444


Q ss_pred             EEeCCcEEEEEcCCcee--eeeec-----c---CCCCCEEEEEEecCCCEEEEEECC-----------CcEEEEEcCCCc
Q 001362          953 LVHETHLAIYEAEELTC--LKQWF-----P---ISSVPISQATFSCDCRMVFTSFVD-----------GTLSIHEASNLE 1011 (1092)
Q Consensus       953 ~~~d~~i~lwd~~~~~~--~~~~~-----~---~h~~~v~~l~fs~dg~~l~t~~~D-----------g~i~vwd~~~~~ 1011 (1092)
                      ...||++++|+...++.  ...+.     .   +|...|.++.|.+++.++++-+..           ..++|-....+.
T Consensus       178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~  257 (388)
T 1xip_A          178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGS  257 (388)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTE
T ss_pred             EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCC
Confidence            47899999999887775  44431     1   478899999999999999874431           145666633333


Q ss_pred             eEE-ee-ccccccCCCCccCcccceE-EEECCCCCCEEEEEeCCC-cEEEEeCCCCCCccccCCCCCcccCCCCCCcc
Q 001362         1012 VQC-RI-LSTAYLRPTTSCLHVYPHA-IAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSE 1085 (1092)
Q Consensus      1012 ~~~-~~-~~~~~~~~~~~~~~v~~~~-~~~~p~~~~~l~~~~~dg-~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1085 (1092)
                      ... .+ ...............+... -.|.|+..+++++++.-. .|.+++-.    . ...+..|..+++.+.+.+
T Consensus       258 ~~f~~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~di~il~~~----~-~~~~~~Ds~Ra~lPl~~~  330 (388)
T 1xip_A          258 ASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSK----Q-VIEPSQDSERAVLPISEE  330 (388)
T ss_dssp             EEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSS----S-EEEESSGGGCCBCCBCTT
T ss_pred             ceeEccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcceEEeccc----c-EEeecCccccceeccCCC
Confidence            211 11 1000011000011112111 245553335666666544 57777532    1 233445567777766665

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.31  E-value=2.7e-10  Score=138.45  Aligned_cols=252  Identities=11%  Similarity=0.046  Sum_probs=165.0

Q ss_pred             cCCCCceEEeecCCCceEEEEEcC----CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~----d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +|...+..++|||||++++.+.+.    ..+|++||+.+|+.+.. .                 +  +......++|+ |
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-D  184 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-G  184 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-T
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-C
Confidence            455678899999999965544333    35799999999986542 1                 1  11112467899 9


Q ss_pred             CCEEEEEeCCC-------------EEEEEEccCCCcccc-eEEEcc-cccceeEEEEecCCCcEEEEEEe---CCCcEEE
Q 001362          408 GSLLGVAYSKH-------------IVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCG---DDKTIKV  469 (1092)
Q Consensus       408 g~~las~~~d~-------------~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~---~d~~i~v  469 (1092)
                      |+.|+.++.+.             .|++|++.++..-.. +..... |...+..+.|||||+++ +++.+   .++.|++
T Consensus       185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~  263 (693)
T 3iuj_A          185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYV  263 (693)
T ss_dssp             TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEE
T ss_pred             CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEE
Confidence            99999998773             499999987653211 111223 44557889999999963 33333   2358999


Q ss_pred             EECCCCc-eeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCc--eEEecCCCCceEEEEEccCCCE
Q 001362          470 WDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRR  543 (1092)
Q Consensus       470 wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~dg~~  543 (1092)
                      ||+.++. ....+..+....... +.+. ++.+++....+   +.|..+++.+...  ...+..+...+.  .|+++++.
T Consensus       264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~  339 (693)
T 3iuj_A          264 KDLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY  339 (693)
T ss_dssp             EETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE
T ss_pred             EECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE
Confidence            9998774 455666666655544 3222 23444555443   6799999987654  234444444444  89999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceE
Q 001362          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNKVQLL  613 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~d----g~i~iwd~~~~~~~  613 (1092)
                      |+..... ++...|++||..++. .+.+....  ...+..+.++++++.++....+    ++++.||+.+++..
T Consensus       340 lv~~~~~-~g~~~l~~~d~~g~~-~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          340 LFAEYMV-DATARVEQFDYEGKR-VREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             EEEEEEE-TTEEEEEEECTTSCE-EEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             EEEEEEE-CCeeEEEEEECCCCe-eEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence            8877643 335679999988554 34443222  2457777788888877665444    78999999887643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.31  E-value=8.5e-10  Score=118.74  Aligned_cols=228  Identities=10%  Similarity=0.052  Sum_probs=150.2

Q ss_pred             cEEEEEEecCCcEE-EEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001362          736 KISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1092)
Q Consensus       736 ~i~~l~~s~~g~~l-~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg  814 (1092)
                      -..+..|++++..+ ++...++.|..|+...                      +. .....     ....+.+++++++|
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~-~~~~~-----~~~~~~~i~~~~dG   65 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFT----------------------KQ-VQRVT-----MDAPVSSVALRQSG   65 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTT----------------------CC-EEEEE-----CSSCEEEEEEBTTS
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCC----------------------Cc-EEEEe-----CCCceEEEEECCCC
Confidence            34578888865544 4445567787776433                      22 11111     34568899999999


Q ss_pred             CEEEEEeCCeEEEEEcCCceeeEEecC----CCCCeEEEEEcCCCCCEEEEEeCC---------CcEEEEEcCC-ceeeE
Q 001362          815 AYLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARS-SEVIS  880 (1092)
Q Consensus       815 ~~l~~~sdg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~d---------g~v~iwd~~~-~~~~~  880 (1092)
                      +++++ .++.|.+||..+++.......    ....+..++++| +++++++....         ..-.||.+.. ++. .
T Consensus        66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~  142 (297)
T 3g4e_A           66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-K  142 (297)
T ss_dssp             SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-E
T ss_pred             CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE-E
Confidence            95554 577899999988765433221    123578899999 78877654322         2345555543 333 3


Q ss_pred             eeccccCCeEEEEEcCCCCEE-EEEeCCCcEEEEEc--CCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eC
Q 001362          881 KLEGHSKRVTGLVFSDALNIL-VSSGGDAQIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE  956 (1092)
Q Consensus       881 ~l~~h~~~V~~l~~spdg~~l-~s~s~Dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d  956 (1092)
                      .+..+......++|+||++.| ++.+.++.|.+|++  .++.......+.......   ..+..+++.++|++.++. ..
T Consensus       143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~  219 (297)
T 3g4e_A          143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNG  219 (297)
T ss_dssp             EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred             EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence            333344557889999999876 45566788999998  455443333333332211   246789999999988775 45


Q ss_pred             CcEEEEEcCCceeeeeeccCCCCCEEEEEEe-cCCCEEEEEEC
Q 001362          957 THLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFV  998 (1092)
Q Consensus       957 ~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~  998 (1092)
                      +.|..||..+++.+..+. .+...+++++|. ||++.|+.++.
T Consensus       220 ~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          220 GRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TEEEEECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CEEEEEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcC
Confidence            779999999898877643 445789999999 89887776654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.30  E-value=1.1e-09  Score=118.01  Aligned_cols=233  Identities=12%  Similarity=0.093  Sum_probs=156.0

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001362          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  410 (1092)
                      ..+..-..+..|+|++..++.+...++.|..||..+++....                     .....+.+++++|+|++
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---------------------~~~~~~~~i~~~~dG~l   67 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV---------------------TMDAPVSSVALRQSGGY   67 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---------------------ECSSCEEEEEEBTTSSE
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE---------------------eCCCceEEEEECCCCCE
Confidence            334445668999997666888888889999999998765321                     13467999999999996


Q ss_pred             EEEEeCCCEEEEEEccCCCcccceEEEcc--cccceeEEEEecCCCcEEEEEEeC---------CCcEEEEECCCCceeE
Q 001362          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGD---------DKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~l~l~s~~~---------d~~i~vwd~~~~~~~~  479 (1092)
                      +++ . ++.|.+||.++++... ......  ....+..++++|+|+  ++++...         .....||.+.....+.
T Consensus        68 ~v~-~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~  142 (297)
T 3g4e_A           68 VAT-I-GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK  142 (297)
T ss_dssp             EEE-E-TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE
T ss_pred             EEE-E-CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE
Confidence            555 3 4569999998875321 111111  224588999999998  4444322         1234555544322233


Q ss_pred             EEecCCcCeEEEeecccCCccEE-EEEecCCeEEEEEcC--CCCce-----EEecCCCCceEEEEEccCCCEEEEEecCC
Q 001362          480 SFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~--~~~~~-----~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      .+..+....+.++|++  +++.| ++.+.++.|.+|+++  ++...     ..+.........++++++|+..++...  
T Consensus       143 ~~~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~--  218 (297)
T 3g4e_A          143 KYFDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN--  218 (297)
T ss_dssp             EEEEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET--
T ss_pred             EEeeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC--
Confidence            3333444567888854  56555 556668899999984  33211     122222346788999999987766543  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEeC
Q 001362          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD  598 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~s~  598 (1092)
                        .+.|..||..+|+.+..+..+.   ..+.+++|. |+++.|++++.
T Consensus       219 --~~~v~~~d~~tG~~~~~i~~p~---~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          219 --GGRVIRLDPVTGKRLQTVKLPV---DKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             --TTEEEEECTTTCCEEEEEECSS---SBEEEEEEESGGGCEEEEEEB
T ss_pred             --CCEEEEEcCCCceEEEEEECCC---CCceEEEEeCCCCCEEEEEcC
Confidence              4569999999999988887765   678999998 88888877654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.29  E-value=6.8e-10  Score=120.12  Aligned_cols=239  Identities=12%  Similarity=0.044  Sum_probs=160.9

Q ss_pred             cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ...+..|..+.......+|+|+|+.++.++..++.|..|+. +++.. .                   +..+...+..++
T Consensus        34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~-------------------~~~~~~~~~gl~   92 (305)
T 3dr2_A           34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-V-------------------LLDATAFTNGNA   92 (305)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-E-------------------EEESCSCEEEEE
T ss_pred             CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-E-------------------EeCCCCccceee
Confidence            33445555566688899999999878889888999999998 45422 1                   223557789999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEccc-ccceeEEEEecCCCcEEEEE----EeC-------------CC
Q 001362          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CGD-------------DK  465 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s----~~~-------------d~  465 (1092)
                      ++++|+++++...++.|.+|+.. ++.........+. ...+.++++.++|+  ++++    |..             .+
T Consensus        93 ~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~  169 (305)
T 3dr2_A           93 VDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHH  169 (305)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred             ECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCC
Confidence            99999977776666789999986 4422111111111 13477899999998  6665    332             25


Q ss_pred             cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC------CeEEEEEcCCCCc---eEEecCCCCceEEEE
Q 001362          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGA---RVDYDAPGLGCTRMA  536 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~---~~~~~~~~~~i~~~~  536 (1092)
                      .|..||..+++.....  .....+.++|+  +|++.|+.+...      +.|.+|++.....   .............++
T Consensus       170 ~v~~~d~~~g~~~~~~--~~~~p~gl~~s--pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~  245 (305)
T 3dr2_A          170 SVYRLPPDGSPLQRMA--DLDHPNGLAFS--PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC  245 (305)
T ss_dssp             EEEEECSSSCCCEEEE--EESSEEEEEEC--TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred             eEEEEcCCCCcEEEEe--cCCCCcceEEc--CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence            6888887777654433  33456778884  466777766655      7899999875431   111122233455789


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc
Q 001362          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV  601 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~  601 (1092)
                      ++++|+..++. .    + .|.+|+. .++.+..+....    .+..++|+++++.|+.++.++.
T Consensus       246 ~d~~G~lwv~~-~----~-gv~~~~~-~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          246 VDRGGWLWSSS-G----T-GVCVFDS-DGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             ECTTSCEEECC-S----S-EEEEECT-TSCEEEEEECSS----CCCEEEECTTSCEEEEEETTEE
T ss_pred             ECCCCCEEEec-C----C-cEEEECC-CCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCeE
Confidence            99999955443 2    2 3999998 577777766543    4788999999999988887653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.28  E-value=1.3e-09  Score=122.58  Aligned_cols=248  Identities=11%  Similarity=0.002  Sum_probs=163.5

Q ss_pred             CCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEEcCCceee
Q 001362          803 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI  879 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~  879 (1092)
                      .....++++++++++++.. ++.|++||..++......... .... ++|++ +++.|+++..++  .|.+|+..++...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence            3567899999999766665 488999999988776555442 2333 99999 888888888766  7999998776544


Q ss_pred             Eee----ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce-EEEEecCCCEEEEE
Q 001362          880 SKL----EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET-HIQFHKDQTRFLLV  954 (1092)
Q Consensus       880 ~~l----~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~s~dg~~la~~  954 (1092)
                      ..+    ..+...+.+++++|++..|..+..++.|+.||..++......... ..+...  .... .++|+|++..|.++
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~--~~P~~~ia~~p~~g~lyv~  284 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG--TNPGPYLIYYFVDSNFYMS  284 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC--CCccccEEEeCCCCEEEEE
Confidence            443    224566788999995555555777889999999876532211110 111111  0113 99999965544443


Q ss_pred             --eCCcEEEEEcCCceeeeeeccCC---------------CCCEEEEEEecCCCEEEEEE-CCCcEEEEEcCCCceEEee
Q 001362          955 --HETHLAIYEAEELTCLKQWFPIS---------------SVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       955 --~d~~i~lwd~~~~~~~~~~~~~h---------------~~~v~~l~fs~dg~~l~t~~-~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
                        .++.|+.|+....  +.. ..++               -.....++|+++|+++++-+ .+++|+.|++.+|......
T Consensus       285 d~~~~~I~~~~~~g~--~~~-~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~  361 (409)
T 3hrp_A          285 DQNLSSVYKITPDGE--CEW-FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA  361 (409)
T ss_dssp             ETTTTEEEEECTTCC--EEE-EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred             eCCCCEEEEEecCCC--EEE-EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence              5678999987643  222 1121               13578999999999888777 7899999998888754332


Q ss_pred             cccc---ccCCCC-ccCcccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001362         1017 LSTA---YLRPTT-SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus      1017 ~~~~---~~~~~~-~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
                      ....   +..... ...--.|..++++|+ +.++++-..++.|+.+.+
T Consensus       362 g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          362 GQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             ECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred             CCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence            2100   000000 001134678999994 777888888888988765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.27  E-value=9.4e-11  Score=129.18  Aligned_cols=273  Identities=11%  Similarity=0.015  Sum_probs=175.1

Q ss_pred             CCceEEeecCCCceEEEEEc--CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001362          335 SSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~--~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      ..+..++++|+|+ ++++..  .++.++||.+.+++..   .++-|..          ...+|-..+..++++++|++++
T Consensus        17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~~----------~~~~~~~~p~gv~~d~~g~L~v   82 (343)
T 2qe8_A           17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQSG----------NAIITFDTVLGIKSDGNGIVWM   82 (343)
T ss_dssp             SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCCS----------SCCCCCSCEEEEEECSSSEEEE
T ss_pred             CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCccc----------CcccceeEeeEEEEcCCCcEEE
Confidence            5899999999998 666653  2343666666555322   2221110          0224667899999999998766


Q ss_pred             EEeC-----CCEEEEEEccCCCcccceEEEc----ccccceeEEEEecCCCcEEEEEEe---CCCcEEEEECCCCceeEE
Q 001362          413 VAYS-----KHIVQLYAYHGGSDARQQLEID----AHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       413 s~~~-----d~~i~iwd~~~~~~~~~~~~~~----~h~~~v~~~~~s~d~~~l~l~s~~---~d~~i~vwd~~~~~~~~~  480 (1092)
                      +-..     ++.|.+||+.+++.++.. .+.    .+...+..+++++++.. ++++..   .++.|.+||+.+++..+.
T Consensus        83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~  160 (343)
T 2qe8_A           83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV  160 (343)
T ss_dssp             EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred             EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence            6543     578999999988654422 221    12345689999987553 456655   688999999999987776


Q ss_pred             EecCCcCeE-EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001362          481 FEGHGAPVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       481 ~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                      +.+|..... ...+  ..++..+.+.+.+|.++.|.              ..+..++++|||+.|+.+...   ...++.
T Consensus       161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~  221 (343)
T 2qe8_A          161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR  221 (343)
T ss_dssp             CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred             ecCCCcccccccce--eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence            655432211 1222  22556677777888877663              135789999999999887642   224666


Q ss_pred             EeCC---CCe-----EEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001362          560 WNES---EGA-----IKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1092)
Q Consensus       560 wd~~---~~~-----~~~--~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1092)
                      ++..   .+.     ...  ...++.   .....++++++|..+++...++.|.+||..+++........ .......++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va  297 (343)
T 2qe8_A          222 IKSADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFN  297 (343)
T ss_dssp             EEHHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEE
T ss_pred             EEHHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeE
Confidence            5532   111     000  111222   34567899999998888888999999998667654433322 223467899


Q ss_pred             EccCCCEEEEEeCCCeE
Q 001362          630 FNKNGTLLAVIANENRI  646 (1092)
Q Consensus       630 ~s~~~~~l~~~~~dg~i  646 (1092)
                      |.++++++++....+.+
T Consensus       298 ~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          298 FGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             ECTTSCEEEEECCGGGS
T ss_pred             ECCCCcEEEEeCccccc
Confidence            99998877777654433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.26  E-value=2.3e-10  Score=124.76  Aligned_cols=272  Identities=10%  Similarity=-0.032  Sum_probs=174.0

Q ss_pred             eEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe--------
Q 001362          348 TLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY--------  415 (1092)
Q Consensus       348 ~llasg~~d~----~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~--------  415 (1092)
                      +++++...++    +|.+.|..+++.+.+..                  .+ ..+  .+++||||++++++.        
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG-~~P--~i~~spDg~~lyVan~~~~r~~~   91 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GA-FLS--LAVAGHSGSDFALASTSFARSAK   91 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------EC-TTC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEe------------------CC-CCC--ceEECCCCCEEEEEccccccccc
Confidence            4556655555    88899999999887522                  12 234  799999999999986        


Q ss_pred             --CCCEEEEEEccCCCcccceEEEcc-c----ccceeEEEEecCCCcEEEEEEe--CCCcEEE--EECCCCceeEEEecC
Q 001362          416 --SKHIVQLYAYHGGSDARQQLEIDA-H----VGNVNDLAFSAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEGH  484 (1092)
Q Consensus       416 --~d~~i~iwd~~~~~~~~~~~~~~~-h----~~~v~~~~~s~d~~~l~l~s~~--~d~~i~v--wd~~~~~~~~~~~~~  484 (1092)
                        .++.|.+||+.+++.+..+. +.+ .    ......++|+|||++  ++.+.  .+..|.+  +|..+   +.++...
T Consensus        92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~  165 (368)
T 1mda_H           92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA  165 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred             CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence              36789999999998766432 220 0    123567999999995  44443  3567888  99877   4555321


Q ss_pred             CcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-----CCceE----EecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001362          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  555 (1092)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~  555 (1092)
                       +.   ..+.+.+. ..+++.+.||.+.+.|+.+     ++...    .+.....+.   . ++++..++..+.     +
T Consensus       166 -~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~  231 (368)
T 1mda_H          166 -SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S  231 (368)
T ss_dssp             -SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred             -Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence             11   12223322 3556677788888888876     22111    011112233   3 666666665543     3


Q ss_pred             eEEEEeCCCCe--EEEEEeec-------cccCCceEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCceEEEEe
Q 001362          556 FLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD---------DHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       556 ~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~p~~~~l~~~s~---------dg~i~iwd~~~~~~~~~~~  617 (1092)
                      .+.+.|..++.  .+..+...       .........++++|++++++.+..         ++.+.++|+.+.+.+..+.
T Consensus       232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~  311 (368)
T 1mda_H          232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS  311 (368)
T ss_dssp             CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred             EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence            48888886532  22222110       000011122679999999887543         2356699999999998887


Q ss_pred             CCCCCCCCceEEEccCCCE-EEEEe-CCCeEEEEECCCCceeeecccc
Q 001362          618 AGGGLPENPRICFNKNGTL-LAVIA-NENRIKILETPESNSVDAAGVL  663 (1092)
Q Consensus       618 ~~~~~~~v~~v~~s~~~~~-l~~~~-~dg~i~iw~~~~~~~~~~~~~~  663 (1092)
                      ...   ....++|+|||++ +++.. .++.|.++|+.+.+.+..+...
T Consensus       312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence            553   3688999999984 55555 5899999999999888877644

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.26  E-value=1.4e-05  Score=94.20  Aligned_cols=532  Identities=9%  Similarity=-0.001  Sum_probs=289.0

Q ss_pred             EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeE
Q 001362          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  489 (1092)
                      +|+.+ ....|+..++++..... ...+. .-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~   83 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE   83 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred             EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence            45554 45568888988654211 11111 2345779999997764 556666788999999876544333332224466


Q ss_pred             EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001362          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1092)
Q Consensus       490 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1092)
                      .+++.+. ++.+.++-...+.|.+.+++...........-.....+++.|....|+..-..  ....|...++.......
T Consensus        84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~  160 (628)
T 4a0p_A           84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT  160 (628)
T ss_dssp             EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred             eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence            7777543 34566666677889999987665444443444567899999976666665321  14568888876544333


Q ss_pred             EEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001362          570 TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  648 (1092)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  648 (1092)
                      ... .   ......+++++++..|+.+. ..+.|..+|+..... ..+...  ......+++.. +.++++-...+.|..
T Consensus       161 l~~-~---~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~  232 (628)
T 4a0p_A          161 LVP-N---VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIER  232 (628)
T ss_dssp             EEC-S---CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             EEC-C---CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEE
Confidence            332 2   25688999999887777765 567899999876544 333222  22345777765 445555555788988


Q ss_pred             EECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccccc
Q 001362          649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  728 (1092)
Q Consensus       649 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~  728 (1092)
                      .|..+++....+.........+.+.......  +       .+.....++.    +   ..+-+-...  ....|.   -
T Consensus       233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~--~-------~n~C~~~ng~----C---~~~C~~~~~--~~~~C~---C  291 (628)
T 4a0p_A          233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS--G-------WNECASSNGH----C---SHLCLAVPV--GGFVCG---C  291 (628)
T ss_dssp             EETTTCCSCEEEECSCCSCCEEEEECGGGSC--C-------CCTTTTTGGG----C---SSEEEEETT--TEEEEE---C
T ss_pred             EECCCCCceEEEecCCCCcceeeeeeecccc--c-------ceEeccCCCC----c---chhhhcCCC--CCeeEE---c
Confidence            8877775555444333333333322111000  0       0000000000    0   000000000  000000   0


Q ss_pred             CC--ccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001362          729 PS--KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  806 (1092)
Q Consensus       729 ~~--~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~  806 (1092)
                      +.  ........|.   +....++.+. ...|+-..+...                    ... -.....   ..-..+.
T Consensus       292 ~~g~~l~~d~~~C~---~~~~~Ll~s~-~~~i~~i~l~~~--------------------~~~-~~~l~~---~~~~~~~  343 (628)
T 4a0p_A          292 PAHYSLNADNRTCS---APTTFLLFSQ-KSAINRMVIDEQ--------------------QSP-DIILPI---HSLRNVR  343 (628)
T ss_dssp             STTCEECTTSSCEE---CCSSEEEEEE-TTEEEEECCCTT--------------------CCC-CEECCC---TTCSCEE
T ss_pred             CCCcEecccCCcCc---cccceeeeec-cceEEEEecccc--------------------cCc-eEEEEe---hhcCCce
Confidence            00  0000001111   1112222222 223322221110                    000 001111   1234577


Q ss_pred             EEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC------CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001362          807 CFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1092)
Q Consensus       807 ~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1092)
                      .++|.+.+..|..+.  .+.|+.++.........+..      ....+..+|+....+++..+-+..+.|.+.++. |+.
T Consensus       344 ~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~  422 (628)
T 4a0p_A          344 AIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRS  422 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCE
T ss_pred             EEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCe
Confidence            899999887777776  47788888764433333332      234678999998335555666677899999987 444


Q ss_pred             eEee-ccccCCeEEEEEcC-CCCEEEEEeCCC--cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE
Q 001362          879 ISKL-EGHSKRVTGLVFSD-ALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV  954 (1092)
Q Consensus       879 ~~~l-~~h~~~V~~l~~sp-dg~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~  954 (1092)
                      ...+ ........+|++.| .|.++++-....  .|...+++......  .+..   ..   .....+++.+++..|..+
T Consensus       423 ~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~~~---~l---~~P~gla~D~~~~~LYw~  494 (628)
T 4a0p_A          423 VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFFS---GL---SKPIALALDSRLGKLFWA  494 (628)
T ss_dssp             EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EECS---SC---SCEEEEEEETTTTEEEEE
T ss_pred             EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EEec---cC---CCccEEEEeCCCCEEEEE
Confidence            4443 33456789999999 555555543332  46666665432111  1211   11   256899999998888775


Q ss_pred             e--CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEee
Q 001362          955 H--ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       955 ~--d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
                      .  .+.|..+++. |.....+.........+++... +..+++=.....|...|..+|+....+
T Consensus       495 D~~~~~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i  556 (628)
T 4a0p_A          495 DSDLRRIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV  556 (628)
T ss_dssp             ETTTTEEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred             eCCCCEEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence            3  4679999985 4444444433344567777654 445555445677888888877654443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.26  E-value=3.1e-10  Score=137.84  Aligned_cols=245  Identities=9%  Similarity=0.063  Sum_probs=160.3

Q ss_pred             CCCCcEEEEEECCCCCEEEEEe-----CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC---
Q 001362          394 DPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK---  465 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~---  465 (1092)
                      +|...+..++|||||++||.+.     ....|++||+.+|+.+..  .+  +......++|+ ||+  .|+.++.+.   
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~--~~~k~~~~~Ws-Dg~--~l~y~~~~~~~~  198 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PL--KDVKFSGISWL-GNE--GFFYSSYDKPDG  198 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EE--EEEESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--cc--CCceeccEEEe-CCC--EEEEEEecCccc
Confidence            4566788999999999999653     235799999999875431  11  11123678999 999  566665553   


Q ss_pred             ----------cEEEEECCCCce----eEEEec-CCcCeEEEeecccCCccEEEEEec----CCeEEEEEcCCCC-ceEEe
Q 001362          466 ----------TIKVWDAVTGSR----TYSFEG-HGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-ARVDY  525 (1092)
Q Consensus       466 ----------~i~vwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~-~~~~~  525 (1092)
                                .|++|++.++..    +..... |...+.++.+  ++||++|+....    +..|.++|+.+.. ....+
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l  276 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV  276 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred             ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence                      499999987653    222233 3445666777  557777754433    2479999988764 34444


Q ss_pred             cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeC-CC--
Q 001362          526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DH--  600 (1092)
Q Consensus       526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~-dg--  600 (1092)
                      ..+....... ++++|..++..+........|+.+|+.++..  ...+..+.   ..+.  .|++++++|+.... ++  
T Consensus       277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~  350 (693)
T 3iuj_A          277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATA  350 (693)
T ss_dssp             ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEE
T ss_pred             eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCee
Confidence            4444444444 6788887776665433367899999988754  24455544   3343  88899998887654 43  


Q ss_pred             cEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC----CeEEEEECCCCc
Q 001362          601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN  655 (1092)
Q Consensus       601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iw~~~~~~  655 (1092)
                      .|++|++..+ ....+..... ..+..+.+++++..++....+    +++..||+.+++
T Consensus       351 ~l~~~d~~g~-~~~~l~~p~~-~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          351 RVEQFDYEGK-RVREVALPGL-GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEECTTSC-EEEEECCSSS-SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEEEECCCC-eeEEeecCCC-ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            6889998754 4455543321 234566677888877766554    889999987764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.25  E-value=3.2e-10  Score=123.65  Aligned_cols=196  Identities=11%  Similarity=0.005  Sum_probs=128.0

Q ss_pred             eEEEEecCCCEEEEEe---CCeEEE--EEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-----
Q 001362          806 PCFALSKNDAYLFSAS---GGVISL--YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-----  875 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~s---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-----  875 (1092)
                      ..++++|||++++++.   +..+.+  +|..+   +.++.... .   ..+.|++...+++.+.||.+.+.++.+     
T Consensus       127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~  199 (368)
T 1mda_H          127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence            3578888988888875   256888  88877   34443211 1   223343455666677888888889887     


Q ss_pred             ceeeEe----eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC------CCCcCCCCCceEEEEe
Q 001362          876 SEVISK----LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFH  945 (1092)
Q Consensus       876 ~~~~~~----l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~s  945 (1092)
                      ++....    +.-...+.   + ++++..++..+. +.|.+.|+.+........+...      .+...  .....++|+
T Consensus       200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~s  272 (368)
T 1mda_H          200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKL  272 (368)
T ss_dssp             EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEE
T ss_pred             CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEEc
Confidence            543321    11122333   3 667777666667 8999999976432211111111      01000  112337899


Q ss_pred             cCCCEEEEE-e-C--------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCceE
Q 001362          946 KDQTRFLLV-H-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQ 1013 (1092)
Q Consensus       946 ~dg~~la~~-~-d--------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~Dg~i~vwd~~~~~~~ 1013 (1092)
                      ||++.+.++ . .        +.+.++|+.+++.+..+..+.  ....++|+|||+ .+++.. .+++|.++|+.+++.+
T Consensus       273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence            999988874 3 2        357799999999888765443  688999999998 456666 5899999999999999


Q ss_pred             Eeec
Q 001362         1014 CRIL 1017 (1092)
Q Consensus      1014 ~~~~ 1017 (1092)
                      .++.
T Consensus       351 ~~I~  354 (368)
T 1mda_H          351 SSVE  354 (368)
T ss_dssp             EECC
T ss_pred             EEEE
Confidence            8876

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.22  E-value=7.1e-10  Score=122.10  Aligned_cols=273  Identities=7%  Similarity=-0.012  Sum_probs=175.4

Q ss_pred             ccEEEEEEecCCcEEEEeec--CCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001362          735 NKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       735 ~~i~~l~~s~~g~~l~~~~~--dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      ..+..++++++|+.+++...  ++.++||.+...      ....   ..-|.           .....+-..+..+++++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g------~~~~---~p~~~-----------~~~~~~~~~p~gv~~d~   76 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD------GLIP---FPPQS-----------GNAIITFDTVLGIKSDG   76 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT------EEEE---SCCCC-----------SSCCCCCSCEEEEEECS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC------Ceec---CCCcc-----------cCcccceeEeeEEEEcC
Confidence            46788999999998777542  343677776511      1000   00000           00112556789999999


Q ss_pred             CCCEEEEEe------CCeEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCCCEEEEEe---CCCcEEEEEcCCce
Q 001362          813 NDAYLFSAS------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGM---DDSTILIYNARSSE  877 (1092)
Q Consensus       813 dg~~l~~~s------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~~~  877 (1092)
                      +|+++++-.      ++.|.+||+.+++.+..+..+      ...+..++++++++..+++..   .++.|.+||+.+++
T Consensus        77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~  156 (343)
T 2qe8_A           77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL  156 (343)
T ss_dssp             SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred             CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence            998766553      378999999999877766432      235689999983455555555   67899999999998


Q ss_pred             eeEeeccccCCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-e
Q 001362          878 VISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H  955 (1092)
Q Consensus       878 ~~~~l~~h~~~V~-~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~  955 (1092)
                      ....+.+|..... ...++++|..+.+.+.|+.++.|..                      .+..++|+|||+.|.++ .
T Consensus       157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~  214 (343)
T 2qe8_A          157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPM  214 (343)
T ss_dssp             EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEES
T ss_pred             EEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeC
Confidence            7777766533211 1445567878888888887765531                      25689999999988875 3


Q ss_pred             CC-cEEEEEcCC---ce-----eeeee-ccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCC
Q 001362          956 ET-HLAIYEAEE---LT-----CLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1092)
Q Consensus       956 d~-~i~lwd~~~---~~-----~~~~~-~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1025 (1092)
                      .+ .+..++...   +.     ....+ ..++.+....++++++|.++++...++.|.+||..+|+......    .+  
T Consensus       215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~--  288 (343)
T 2qe8_A          215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DE--  288 (343)
T ss_dssp             SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CG--
T ss_pred             CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CC--
Confidence            33 455554321   10     00000 11234456779999999999998889999999986675432221    11  


Q ss_pred             CccCcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001362         1026 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus      1026 ~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
                         ....+..++++| ++.++++....+.+.+|+
T Consensus       289 ---~~~~p~~va~~~-~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          289 ---KLSWTDSFNFGS-DGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             ---GGSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred             ---ceecCCeeEECC-CCcEEEEeCccccccccc
Confidence               123567889998 477777777665554443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.21  E-value=6.7e-09  Score=113.27  Aligned_cols=224  Identities=13%  Similarity=0.030  Sum_probs=149.4

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      -..+.+|+|++..++.++..++.|..||..+++...                    +. ....|.+++|+|+|+++++. 
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~~-~~~~v~~i~~~~dg~l~v~~-  107 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------HA-LPFMGSALAKISDSKQLIAS-  107 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-CSSCEEEEEEEETTEEEEEE-
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------EE-CCCcceEEEEeCCCeEEEEE-
Confidence            456889999876688888888999999998875431                    11 23579999999999887765 


Q ss_pred             CCCEEEEEEccCCCcccceEEEc-c-cccceeEEEEecCCCcEEEEEEeC------CCcEEEEECCCCceeEEEecCCcC
Q 001362          416 SKHIVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~~~-~-h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      .++ |.+||..+++... ..... + ....+.+++++|+|+  ++++...      .+.|..++  +++.. .+..+...
T Consensus       108 ~~g-l~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~  180 (326)
T 2ghs_A          108 DDG-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI  180 (326)
T ss_dssp             TTE-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred             CCC-EEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence            444 9999998876321 11111 1 124688999999998  4444432      24555556  45433 33333345


Q ss_pred             eEEEeecccCCccEE-EEEecCCeEEEEEcC--CC-Cc-----eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001362          488 VYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SL-GA-----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       488 v~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1092)
                      .+.++|+  ++++.+ ++.+.++.|.+|+++  ++ ..     ...+.........++++++|+..++...    .+.|.
T Consensus       181 ~~~i~~s--~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~  254 (326)
T 2ghs_A          181 PNSICFS--PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVD  254 (326)
T ss_dssp             EEEEEEC--TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEE
T ss_pred             cCCeEEc--CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEE
Confidence            6778885  466655 444567899999986  43 21     1122223445778999999987766532    34699


Q ss_pred             EEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEeC
Q 001362          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD  598 (1092)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~s~  598 (1092)
                      .||. +++.+..+....   ..+.+++|+ ++++.|++++.
T Consensus       255 ~~d~-~g~~~~~i~~~~---~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          255 RYDT-DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EECT-TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEEB
T ss_pred             EECC-CCCEEEEEECCC---CCcEEEEEecCCCCEEEEEec
Confidence            9998 677777776544   579999998 88887766553

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.20  E-value=1.1e-08  Score=122.62  Aligned_cols=199  Identities=11%  Similarity=0.089  Sum_probs=133.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcC----------e-EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001362          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY  525 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  525 (1092)
                      .++.++.++.|..+|..+|+.+.++......          + ..+++    ++..++.++.|+.|..+|..+++.+..+
T Consensus        79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            4666777899999999999999887643221          0 11222    3457888999999999999999988876


Q ss_pred             cCC-C----CceEEEEEccCCCEEEEEecCCC--CceeEEEEeCCCCeEEEEEeecccc---------------------
Q 001362          526 DAP-G----LGCTRMAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQ---------------------  577 (1092)
Q Consensus       526 ~~~-~----~~i~~~~~s~dg~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~---------------------  577 (1092)
                      ... .    ..+.+.-.. .+..+++++...+  .++.|+.+|..+|+.+-.+......                     
T Consensus       155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g  233 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG  233 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred             cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence            654 1    112111111 2345555443211  2578999999999998777643210                     


Q ss_pred             --------CCceEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceEEEEeCCCCC-------C
Q 001362          578 --------HNSVSVVHFDTAKDQILAAGDDH-------------------VIKIWDMNKVQLLTTIDAGGGL-------P  623 (1092)
Q Consensus       578 --------~~~v~~~~~~p~~~~l~~~s~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~  623 (1092)
                              ......++++|++..++.++.++                   .|..+|..+|+.+..+....+.       .
T Consensus       234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~  313 (677)
T 1kb0_A          234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ  313 (677)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence                    00113568889999999887664                   5999999999999887753221       1


Q ss_pred             CCceEEEccCC---CEEEEEeCCCeEEEEECCCCceeeec
Q 001362          624 ENPRICFNKNG---TLLAVIANENRIKILETPESNSVDAA  660 (1092)
Q Consensus       624 ~v~~v~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~  660 (1092)
                      ....+....+|   ..+++++.+|.++++|..+++.+...
T Consensus       314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~  353 (677)
T 1kb0_A          314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK  353 (677)
T ss_dssp             CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence            12223333477   68899999999999999999876554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.20  E-value=7.1e-09  Score=124.38  Aligned_cols=227  Identities=14%  Similarity=0.123  Sum_probs=151.7

Q ss_pred             CCeEEEEEcCCceeeEEecCCCCC--------------------------------eEEEEEcCCCCCEEEEEeCCC---
Q 001362          822 GGVISLYIVMTFKTILTIMPPSPT--------------------------------ATSLAFNPHDNNVIAIGMDDS---  866 (1092)
Q Consensus       822 dg~i~iwd~~~~~~~~~~~~~~~~--------------------------------i~~l~~s~~d~~~lasg~~dg---  866 (1092)
                      ++.|+.+|..+|+.+.++......                                ...++++| ++.+|+.++.++   
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w  267 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW  267 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence            467888888888887766432211                                13578899 677888887764   


Q ss_pred             ----------------cEEEEEcCCceeeEeecc--cc-------CCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCC
Q 001362          867 ----------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGW  918 (1092)
Q Consensus       867 ----------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spdg---~~l~s~s~Dg~i~iwd~~~~  918 (1092)
                                      .|..+|..+|+.+..+..  |.       ....-+....+|   +.++.++.+|.|.++|..++
T Consensus       268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG  347 (677)
T 1kb0_A          268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG  347 (677)
T ss_dssp             CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence                            599999999999877653  31       122223444477   68999999999999999998


Q ss_pred             ceeeeeeeecCC--------CC------------c-----CCC--CCceEEEEecCCCEEEEE-eC--------------
Q 001362          919 GIQTCRSLQTPD--------GV------------M-----TLA--PSETHIQFHKDQTRFLLV-HE--------------  956 (1092)
Q Consensus       919 ~~~~~~~~~~~~--------~~------------~-----~~~--~~v~~l~~s~dg~~la~~-~d--------------  956 (1092)
                      +......+....        +.            .     ...  ..-..++|+|++.++.+. .+              
T Consensus       348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g  427 (677)
T 1kb0_A          348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN  427 (677)
T ss_dssp             CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred             CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence            865422211000        00            0     000  001367899999888773 21              


Q ss_pred             -----------------------------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001362          957 -----------------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       957 -----------------------------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
                                                   +.|..||+.+++.+....  +..++....++.+|..+++++.||.+++||+
T Consensus       428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~  505 (677)
T 1kb0_A          428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA  505 (677)
T ss_dssp             CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence                                         679999999999876643  3445556667888889999999999999999


Q ss_pred             CCCceEEeeccccccCCCCccCcccceEEEECCCCCC-EEEEEeC----------------CCcEEEEeCC
Q 001362         1008 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT-QFAVGLT----------------NGEVYVIEPN 1061 (1092)
Q Consensus      1008 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~-~l~~~~~----------------dg~v~~w~~~ 1061 (1092)
                      .+|+.+.++....    +     +...-+.+.+ ++. ++++.+.                .+.+.+|.+.
T Consensus       506 ~tG~~lw~~~~~~----~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~  566 (677)
T 1kb0_A          506 ATGEKLWEAPTGT----G-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG  566 (677)
T ss_dssp             TTCCEEEEEECSS----C-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred             CCCceeeeeeCCC----C-----cccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence            9999998887332    1     1112234444 344 4444333                4788999987

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.18  E-value=7.7e-09  Score=124.37  Aligned_cols=383  Identities=10%  Similarity=0.104  Sum_probs=216.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcC----------e-EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001362          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY  525 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  525 (1092)
                      .++.++.++.|..+|.++|+.+.++......          + ..+++    .+..++.++.|+.|..+|..+++.+...
T Consensus        72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            4666777899999999999999888643221          0 11111    2357888999999999999999988766


Q ss_pred             cCC-C-CceEEEEEcc---CCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeeccc----------------------
Q 001362          526 DAP-G-LGCTRMAYSA---NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL----------------------  576 (1092)
Q Consensus       526 ~~~-~-~~i~~~~~s~---dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~----------------------  576 (1092)
                      ... . .....+..+|   ++. ++++....  ..++.|+.||..+|+.+-.+.....                      
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  226 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA  226 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred             cCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence            543 1 1101111112   444 44443211  1367899999999999877653110                      


Q ss_pred             ------cCCceEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceEEEEeCCCCC-------CC
Q 001362          577 ------QHNSVSVVHFDTAKDQILAAGDDHV-------------------IKIWDMNKVQLLTTIDAGGGL-------PE  624 (1092)
Q Consensus       577 ------~~~~v~~~~~~p~~~~l~~~s~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~  624 (1092)
                            +......++++|++..++.++.++.                   |..||..+|+.+..+....+.       ..
T Consensus       227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~  306 (689)
T 1yiq_A          227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH  306 (689)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence                  0011125788899899999887764                   999999999999888653221       01


Q ss_pred             CceEEEccCCC---EEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001362          625 NPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1092)
Q Consensus       625 v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1092)
                      ........+|+   .++.++.+|.++++|..+++.+......... +...+.+.                     .+..+
T Consensus       307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~~~~---------------------~~~pi  364 (689)
T 1yiq_A          307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS-WTKGMDMK---------------------TGRPI  364 (689)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS-SEEEEETT---------------------TTEEE
T ss_pred             cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc-cccccCcc---------------------CCCcc
Confidence            11112223565   7888999999999999999877543321100 00000000                     00000


Q ss_pred             eeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCc
Q 001362          702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  781 (1092)
Q Consensus       702 ~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~  781 (1092)
                      ...    .. .|..    +.....+..|.......-..++++|+...+++...+....++......              
T Consensus       365 ~~~----~~-~~~~----~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~--------------  421 (689)
T 1yiq_A          365 LDE----EN-AAYW----KNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP--------------  421 (689)
T ss_dssp             ECH----HH-HCTT----TSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC--------------
T ss_pred             cch----hh-cccc----CCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc--------------
Confidence            000    00 0000    000111222222222233458899998888887776544443321100              


Q ss_pred             cccCCCCCceeeecCCCCCCCCCeeEEEEecC---CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC
Q 001362          782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN---DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN  857 (1092)
Q Consensus       782 ~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~d---g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~  857 (1092)
                      .|....+. .         .....  +...|.   +....... +|.|..||+.+++.+..+..+.. ...-.++. .+.
T Consensus       422 ~~~~~~~~-~---------~~g~~--~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agg  487 (689)
T 1yiq_A          422 KRNPFKSM-Y---------QLGLR--TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGN  487 (689)
T ss_dssp             CCCSCTTS-C---------CCSSE--ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTT
T ss_pred             cccccccc-c---------ccCcc--ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceE-CCC
Confidence            01110000 0         00000  000000   00000001 37899999999999888765432 22334555 566


Q ss_pred             EEEEEeCCCcEEEEEcCCceeeEeeccccCC-eEEEEEcCCCCEEEE
Q 001362          858 VIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS  903 (1092)
Q Consensus       858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s  903 (1092)
                      ++++|+.||.++.||.++|+.+.+++...+. ..-+.|+.||+..+.
T Consensus       488 lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          488 LVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            9999999999999999999999888754332 234677788875443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.17  E-value=1.2e-09  Score=119.26  Aligned_cols=184  Identities=11%  Similarity=0.078  Sum_probs=133.8

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      .++.+++++... ++++|+.+ .+++|++........         .....++......+.. |++++|  |+++|+++ 
T Consensus        39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~---------~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-  103 (388)
T 1xip_A           39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHIT---------SDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-  103 (388)
T ss_dssp             CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHH---------SSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred             cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhc---------cccccccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence            799999999998 67887776 566698754321000         0000011101223556 999999  99999999 


Q ss_pred             CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001362          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  495 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  495 (1092)
                      .++.|++||+.+.....   ....|..++.++.+.+.    -+++++.||.|.+||+.++....    +...|++++|++
T Consensus       104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp  172 (388)
T 1xip_A          104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN  172 (388)
T ss_dssp             ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred             cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence            88999999998765333   45567778888887754    27778899999999999887653    456899999966


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCc--eEEe------c---CCCCceEEEEEccCCCEEEEEec
Q 001362          496 KENIHFIFSISVDGKIKAWLYDSLGA--RVDY------D---APGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       496 ~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~------~---~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                        +|  ++.|..||++++|+.+....  ...+      .   .+...|.++.|.+++.++++-..
T Consensus       173 --kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~  233 (388)
T 1xip_A          173 --SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN  233 (388)
T ss_dssp             --SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred             --Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence              44  78899999999998877664  4444      2   35678999999999999886554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.17  E-value=1.2e-08  Score=111.33  Aligned_cols=225  Identities=10%  Similarity=0.018  Sum_probs=145.4

Q ss_pred             EEEEEEecCCcEE-EEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001362          737 ISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1092)
Q Consensus       737 i~~l~~s~~g~~l-~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~  815 (1092)
                      ..+.+|++++..+ ++...++.|..|+...                      +. .....     ....+.+++++++|+
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~-~~~~~-----~~~~v~~i~~~~dg~  102 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLAS----------------------GR-KTVHA-----LPFMGSALAKISDSK  102 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTT----------------------TE-EEEEE-----CSSCEEEEEEEETTE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCC----------------------Cc-EEEEE-----CCCcceEEEEeCCCe
Confidence            4567899975544 4444567777776432                      21 11111     234688999999999


Q ss_pred             EEEEEeCCeEEEEEcCCceeeEEecC----CCCCeEEEEEcCCCCCEEEEEeC------CCcEEEEEcCCceeeEeeccc
Q 001362          816 YLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMD------DSTILIYNARSSEVISKLEGH  885 (1092)
Q Consensus       816 ~l~~~sdg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~------dg~v~iwd~~~~~~~~~l~~h  885 (1092)
                      ++++. ++.|.+||..+++.......    ....+..++++| +++++++...      .+.|..++  +++.. .+..+
T Consensus       103 l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~  177 (326)
T 2ghs_A          103 QLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD  177 (326)
T ss_dssp             EEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE
T ss_pred             EEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC
Confidence            87765 55599999988775433221    123578999999 7877665442      24566666  45543 33334


Q ss_pred             cCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcC--CC-ceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEE
Q 001362          886 SKRVTGLVFSDALNILVSS-GGDAQIFVWDVD--GW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA  960 (1092)
Q Consensus       886 ~~~V~~l~~spdg~~l~s~-s~Dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~  960 (1092)
                      ......++|+||++.|..+ +.++.|.+|++.  ++ +......+.......   ..+..+++.++|.+.++. .++.|.
T Consensus       178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~  254 (326)
T 2ghs_A          178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVD  254 (326)
T ss_dssp             ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEE
T ss_pred             CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEE
Confidence            4557789999999876544 557889999986  54 322212222222111   246789999999987775 457899


Q ss_pred             EEEcCCceeeeeeccCCCCCEEEEEEe-cCCCEEEEEECC
Q 001362          961 IYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVD  999 (1092)
Q Consensus       961 lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~D  999 (1092)
                      +||. +++.+..+ ..+...+++++|+ +|++.|++++..
T Consensus       255 ~~d~-~g~~~~~i-~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          255 RYDT-DGNHIARY-EVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EECT-TCCEEEEE-ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EECC-CCCEEEEE-ECCCCCcEEEEEecCCCCEEEEEecC
Confidence            9998 56665553 3445679999999 898877655544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.17  E-value=6.9e-08  Score=107.90  Aligned_cols=151  Identities=15%  Similarity=0.071  Sum_probs=100.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCC---------cCeE-EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001362          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG---------APVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD  526 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---------~~v~-~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  526 (1092)
                      .++.++.++.|..+|.++|+.+.......         ..+. ....    ++..++.++.++.|..+|..+++......
T Consensus        55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            47778889999999999999987765422         2222 2222    33578889999999999999998877665


Q ss_pred             CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC--CceEEEEEcCCCCEEEEEeCCCcEEE
Q 001362          527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKI  604 (1092)
Q Consensus       527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~l~~~s~dg~i~i  604 (1092)
                      ........... .+ ..+++++.    ++.|+.+|..+|+.+..+.......  .........  +..+++++.++.+..
T Consensus       131 ~~~~~~~~p~~-~~-~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~  202 (376)
T 3q7m_A          131 VAGEALSRPVV-SD-GLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA  202 (376)
T ss_dssp             CSSCCCSCCEE-ET-TEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred             CCCceEcCCEE-EC-CEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence            44322211222 23 35555543    5679999999999887766533000  000111222  457888888999999


Q ss_pred             EECCCCceEEEEeCC
Q 001362          605 WDMNKVQLLTTIDAG  619 (1092)
Q Consensus       605 wd~~~~~~~~~~~~~  619 (1092)
                      +|..+|+.+......
T Consensus       203 ~d~~tG~~~w~~~~~  217 (376)
T 3q7m_A          203 VLMEQGQMIWQQRIS  217 (376)
T ss_dssp             EETTTCCEEEEEECC
T ss_pred             EECCCCcEEEEEecc
Confidence            999999988777643

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.17  E-value=7.7e-09  Score=111.76  Aligned_cols=232  Identities=14%  Similarity=0.083  Sum_probs=152.3

Q ss_pred             CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001362          394 DPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~  472 (1092)
                      .+.......+|+|+|+ ++++...++.|..|+. +++ ..   .+..+...+..++++++|+  ++++...++.|.+||.
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDA  114 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECC
Confidence            3555677899999999 5556667789999998 443 22   3445666789999999998  5666556678999997


Q ss_pred             CCCceeEEEecC----CcCeEEEeecccCCccEEEE----Eec-------------CCeEEEEEcCCCCceEEecCCCCc
Q 001362          473 VTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFS----ISV-------------DGKIKAWLYDSLGARVDYDAPGLG  531 (1092)
Q Consensus       473 ~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~  531 (1092)
                      + ++........    ...++.+++.  ++|.++++    |..             .+.|..+|..+++.....  ....
T Consensus       115 ~-g~~~~~~~~~~~~~~~~~~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~  189 (305)
T 3dr2_A          115 D-GQAHLLVGRYAGKRLNSPNDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH  189 (305)
T ss_dssp             T-SCEEEEECEETTEECSCCCCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred             C-CCEEEEEeccCCCccCCCCCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence            6 6533222111    1235667774  47777776    322             245666766555544332  3345


Q ss_pred             eEEEEEccCCCEEEEEecCC--CCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001362          532 CTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       532 i~~~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~  607 (1092)
                      ...++|+||++.|+.+....  .+...|+.|+...+...  ..+...  .......+++.++|+ +.+++.+ .|.+|+.
T Consensus       190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~  265 (305)
T 3dr2_A          190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS  265 (305)
T ss_dssp             EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSC-EEECCSS-EEEEECT
T ss_pred             CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCC-EEEecCC-cEEEECC
Confidence            67899999999887765421  01257999998765421  111111  124456788999998 4444444 4999998


Q ss_pred             CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001362          608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  645 (1092)
Q Consensus       608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  645 (1092)
                       +++.+..+..+.   .+.+++|+++++.|.+++.++.
T Consensus       266 -~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          266 -DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             -TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEE
T ss_pred             -CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeE
Confidence             577777776554   3789999999998988887643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.16  E-value=2.1e-05  Score=92.70  Aligned_cols=520  Identities=8%  Similarity=-0.024  Sum_probs=269.8

Q ss_pred             CCEEEEEEccCCC-cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-eEEEecCCcCeEEEeec
Q 001362          417 KHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       417 d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~  494 (1092)
                      ...|+..++.... ...   .+...-.....++|++.+.. ++++-...+.|..++++.... ...+...-.....+++.
T Consensus        17 ~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD   92 (619)
T 3s94_A           17 RRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD   92 (619)
T ss_dssp             SSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred             cccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence            4457777776542 111   11223345778999997764 445555678899999876532 22333333567788885


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001362          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  574 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  574 (1092)
                      +. ++.+.++-...+.|.+.+++.................+++.|.+.+|+.....  ....|...++............
T Consensus        93 ~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~~  169 (619)
T 3s94_A           93 WL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINSE  169 (619)
T ss_dssp             TT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECSS
T ss_pred             ec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeCC
Confidence            53 34566666778899999998765544443444456789999986666655321  1345777776543332222222


Q ss_pred             cccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001362          575 QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       575 ~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                         ......+++++++..|+.+. ..+.|...|+............  ......+++..+ .++++-..++.|...+..+
T Consensus       170 ---~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~t  243 (619)
T 3s94_A          170 ---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYT  243 (619)
T ss_dssp             ---CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSS
T ss_pred             ---CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCC
Confidence               25678999999877777664 5677888888754433322211  223457787765 4444445578899999887


Q ss_pred             CceeeecccccCceeeeeec-CCCcccc--cc---c-cCCceeecCCCCCCCccceeeccccccceeccccccCcccccc
Q 001362          654 SNSVDAAGVLSDNLRKLSVN-PISTVTG--AG---I-ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL  726 (1092)
Q Consensus       654 ~~~~~~~~~~~~~v~~~~~~-~~~~~~~--~~---~-~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~  726 (1092)
                      ++....+.........+++. +.....+  .+   . .-....+.   +|..........+|...               
T Consensus       244 g~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~---~~~~~~~~C~C~~g~~l---------------  305 (619)
T 3s94_A          244 GEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLM---SPVKPFYQCACPTGVKL---------------  305 (619)
T ss_dssp             CCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEE---CSSTTSEEEECCTTCCB---------------
T ss_pred             CcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEEC---CCCCCCceEeCCchhee---------------
Confidence            76555544333233333332 1110000  00   0 00000010   00000000000000000               


Q ss_pred             ccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001362          727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  806 (1092)
Q Consensus       727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~  806 (1092)
                        .    .....|.   +..+.++..+..+.|+..++.....                    . .....+.   .-..+.
T Consensus       306 --~----~d~~~C~---~~~~~~Ll~~~~~~i~~i~l~~~~~--------------------~-~~~~~~~---~l~~~~  352 (619)
T 3s94_A          306 --L----ENGKTCK---DGATELLLLARRTDLRRISLDTPDF--------------------T-DIVLQLE---DIRHAI  352 (619)
T ss_dssp             --C----TTSSCBC---SSCSEEEEEEESSCEEEEESSSTTC--------------------C-CEECCCS---CCSSEE
T ss_pred             --c----ccCcccC---CCCceEEEEEcccceEEEecCCCcc--------------------c-eeEEecc---ccCccE
Confidence              0    0000000   0011122223334454444332110                    0 0011111   223467


Q ss_pred             EEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee-c
Q 001362          807 CFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-E  883 (1092)
Q Consensus       807 ~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~  883 (1092)
                      +++|.+.+..|..++  .+.|..++.........+...-.....+|+.+.++++.++-+..+.|.+.++.... ...+ .
T Consensus       353 ~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~  431 (619)
T 3s94_A          353 AIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILIS  431 (619)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC
T ss_pred             EEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEE
Confidence            899998776666665  57899998875443333433335667899986355566666667899999987543 3333 3


Q ss_pred             cccCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCCcE
Q 001362          884 GHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHL  959 (1092)
Q Consensus       884 ~h~~~V~~l~~spdg~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~i  959 (1092)
                      ..-....+|++.|....|..+..  ...|...+++......  ...   ...   .....+++++++..|..+  ..+.|
T Consensus       432 ~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~--l~~---~~l---~~P~GlalD~~~~~LY~aD~~~~~I  503 (619)
T 3s94_A          432 EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV--LVN---TSL---GWPNGLALDYDEGKIYWGDAKTDKI  503 (619)
T ss_dssp             TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EEC---SSC---SCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE--EEe---CCC---CCCeeeEEcccCCEEEEEECCCCEE
Confidence            34456889999997444444432  3566666766533211  111   111   257899999988877775  44678


Q ss_pred             EEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001362          960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
                      ..+++.... ...+....-....+++...+ ...++-...+.|...+..+|.
T Consensus       504 ~~~~~dG~~-~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          504 EVMNTDGTG-RRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             EEEESSSCC-CEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred             EEEecCCCc-eEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence            888885433 33322222222344555433 333333345667777777773

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.13  E-value=6.5e-08  Score=105.21  Aligned_cols=233  Identities=14%  Similarity=0.109  Sum_probs=151.8

Q ss_pred             EEe--cCCCEEEEEe--CCeEEEEEcCCc----eeeEEec------C-CCCCeEEEEEcCCCCCEEEEEeCC------Cc
Q 001362          809 ALS--KNDAYLFSAS--GGVISLYIVMTF----KTILTIM------P-PSPTATSLAFNPHDNNVIAIGMDD------ST  867 (1092)
Q Consensus       809 ~~s--~dg~~l~~~s--dg~i~iwd~~~~----~~~~~~~------~-~~~~i~~l~~s~~d~~~lasg~~d------g~  867 (1092)
                      .++  +++++|++.+  +++|.++|+.+.    +...++.      . ....-..+.++| ++ +++++..+      |.
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~  165 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG  165 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence            346  8899998887  588999999765    6666663      0 112446678899 77 76666655      78


Q ss_pred             EEEEEcCCceeeEeeccccC---CeEEEEEcCCCCEEEEEe-------------------CCCcEEEEEcCCCceeeeee
Q 001362          868 ILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSG-------------------GDAQIFVWDVDGWGIQTCRS  925 (1092)
Q Consensus       868 v~iwd~~~~~~~~~l~~h~~---~V~~l~~spdg~~l~s~s-------------------~Dg~i~iwd~~~~~~~~~~~  925 (1092)
                      |.++|..+.+.+.++..-.+   --..+.|+|+++.+++..                   .+.+|.+||+.+++...  .
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t  243 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S  243 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred             EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence            99999999999999873222   234588999999999874                   36889999999864333  2


Q ss_pred             eecCCCCcCCCCCceEEEE--ecCCCEEEEE-------eCCcEEEEEcCCceeeeee---ccC----------------C
Q 001362          926 LQTPDGVMTLAPSETHIQF--HKDQTRFLLV-------HETHLAIYEAEELTCLKQW---FPI----------------S  977 (1092)
Q Consensus       926 ~~~~~~~~~~~~~v~~l~~--s~dg~~la~~-------~d~~i~lwd~~~~~~~~~~---~~~----------------h  977 (1092)
                      +.......    ....+.|  +|+++++.++       .+++|.+|....++.....   ...                -
T Consensus       244 I~vg~~g~----~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~  319 (462)
T 2ece_A          244 LTLGEENR----MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV  319 (462)
T ss_dssp             EESCTTEE----EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred             EecCCCCC----ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence            33321111    2445655  9999988873       3457877665544311110   000                0


Q ss_pred             CCCEEEEEEecCCCEEEEEEC-CCcEEEEEcCC---CceEEeeccccccCCCCc----cCcccceEEEECCCCCCEEEEE
Q 001362          978 SVPISQATFSCDCRMVFTSFV-DGTLSIHEASN---LEVQCRILSTAYLRPTTS----CLHVYPHAIAAHPLKPTQFAVG 1049 (1092)
Q Consensus       978 ~~~v~~l~fs~dg~~l~t~~~-Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~p~~~~~l~~~ 1049 (1092)
                      ......+.+|+||++|.++.. .+.|.++|+..   .+++..+..........|    .....|..++++| |+++|.++
T Consensus       320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVa  398 (462)
T 2ece_A          320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVT  398 (462)
T ss_dssp             CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEE
T ss_pred             CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEE
Confidence            245788999999999988775 68999999863   355555543211100000    0012466789999 58888888


Q ss_pred             e
Q 001362         1050 L 1050 (1092)
Q Consensus      1050 ~ 1050 (1092)
                      .
T Consensus       399 N  399 (462)
T 2ece_A          399 N  399 (462)
T ss_dssp             C
T ss_pred             c
Confidence            7

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.13  E-value=7.1e-08  Score=107.80  Aligned_cols=277  Identities=11%  Similarity=0.048  Sum_probs=172.0

Q ss_pred             EEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC
Q 001362          350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS  429 (1092)
Q Consensus       350 lasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~  429 (1092)
                      +.+++.++.|..+|..+|+.+-........      ..    .......+.+ ....++..+++++.++.|..+|..+|+
T Consensus        56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~------~~----~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~  124 (376)
T 3q7m_A           56 VYAADRAGLVKALNADDGKEIWSVSLAEKD------GW----FSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGT  124 (376)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCC---------C----CSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEcCCCeEEEEEccCCceeeeecCcccc------cc----ccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCC
Confidence            556677899999999999977543321000      00    0000122222 122246678888899999999999997


Q ss_pred             cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe-----EEEeecccCCccEEEE
Q 001362          430 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----YSLCPHAKENIHFIFS  504 (1092)
Q Consensus       430 ~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~l~s  504 (1092)
                      .+-.   .............. ++   .++.++.++.|..+|.++|+.+..........     .....    .+..++.
T Consensus       125 ~~W~---~~~~~~~~~~p~~~-~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~----~~~~v~~  193 (376)
T 3q7m_A          125 VAWQ---TKVAGEALSRPVVS-DG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT----AFGAAVV  193 (376)
T ss_dssp             EEEE---EECSSCCCSCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE----ETTEEEE
T ss_pred             EEEE---EeCCCceEcCCEEE-CC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE----ECCEEEE
Confidence            5532   22222111122222 34   47778889999999999999988776433221     11111    2246788


Q ss_pred             EecCCeEEEEEcCCCCceEEecCCCCc----eEE---EEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001362          505 ISVDGKIKAWLYDSLGARVDYDAPGLG----CTR---MAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1092)
Q Consensus       505 ~~~dg~i~vwd~~~~~~~~~~~~~~~~----i~~---~~~s~--dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1092)
                      ++.++.+..+|..+++...........    +..   +...|  .+..++.++.    ++.++.+|..+|+.+.....  
T Consensus       194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~----~g~l~~~d~~tG~~~w~~~~--  267 (376)
T 3q7m_A          194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY----NGNLTALDLRSGQIMWKREL--  267 (376)
T ss_dssp             CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT----TSCEEEEETTTCCEEEEECC--
T ss_pred             EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec----CcEEEEEECCCCcEEeeccC--
Confidence            888999999999988887665432210    000   00111  2445555543    45699999999988766543  


Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001362          576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       576 ~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                         .....+..  ++..+++++.++.+..+|..+++.+........ ..+.....  .+..+++++.+|.+..+|..+++
T Consensus       268 ---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          268 ---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR  339 (376)
T ss_dssp             ---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred             ---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence               22333333  467888899999999999999998877752211 11222232  25688899999999999999998


Q ss_pred             eeeeccc
Q 001362          656 SVDAAGV  662 (1092)
Q Consensus       656 ~~~~~~~  662 (1092)
                      .+.....
T Consensus       340 ~~~~~~~  346 (376)
T 3q7m_A          340 FVAQQKV  346 (376)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            7765543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.10  E-value=1.7e-08  Score=121.30  Aligned_cols=290  Identities=12%  Similarity=0.048  Sum_probs=180.4

Q ss_pred             EEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC-CcE-EEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001362          350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSV-NRVVWSPDGSLLGVAYSKHIVQLYAYHG  427 (1092)
Q Consensus       350 lasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V-~~l~~spdg~~las~~~d~~i~iwd~~~  427 (1092)
                      +.+++.++.|.-+|..+|+.+-.+....-     ...     ..... ..+ ..+++  ++..|++++.|+.|..+|..+
T Consensus        73 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~-----~~~-----~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~T  140 (689)
T 1yiq_A           73 MYTTGPFSVVYALDARDGRLIWKYDPQSD-----RHR-----AGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKT  140 (689)
T ss_dssp             EEEECGGGCEEEEETTTCCEEEEECCCCC-----GGG-----GGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred             EEEEcCCCeEEEEECCCCceeEEEcCCCC-----ccc-----cccccccCCCCccEE--ECCEEEEEccCCEEEEEECCC
Confidence            55566789999999999998765332100     000     00000 000 01122  467888899999999999999


Q ss_pred             CCcccceEEEcccc---cceeEEEEecCCCcEEEEEEe-----CCCcEEEEECCCCceeEEEecCC-c------------
Q 001362          428 GSDARQQLEIDAHV---GNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHG-A------------  486 (1092)
Q Consensus       428 ~~~~~~~~~~~~h~---~~v~~~~~s~d~~~l~l~s~~-----~d~~i~vwd~~~~~~~~~~~~~~-~------------  486 (1092)
                      |+.+-.... ..+.   ..+.+.-.-.++.  +++..+     .++.|+.||.++|+.+..+.... .            
T Consensus       141 G~~~W~~~~-~~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~  217 (689)
T 1yiq_A          141 GQRAWSVDT-RADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI  217 (689)
T ss_dssp             CCEEEEEEC-CSCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred             CCEeeeecC-cCCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence            986543211 1011   1111111112554  333322     37899999999999998775211 0            


Q ss_pred             ------------------CeEEEeecccCCccEEEEEecCCe-------------------EEEEEcCCCCceEEecCCC
Q 001362          487 ------------------PVYSLCPHAKENIHFIFSISVDGK-------------------IKAWLYDSLGARVDYDAPG  529 (1092)
Q Consensus       487 ------------------~v~~~~~~~~~~~~~l~s~~~dg~-------------------i~vwd~~~~~~~~~~~~~~  529 (1092)
                                        ....+++  +++..+++.++.++.                   |..+|.++++.+..+....
T Consensus       218 ~~~~~~g~~w~~~~~g~~~w~~~~~--d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~  295 (689)
T 1yiq_A          218 AAKTWFGDAYVEQGGGGTAWDSFAY--DPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP  295 (689)
T ss_dssp             HHTTCCSSTHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred             cccccCCceeeecCCCCccccceeE--cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC
Confidence                              0012344  334568888887764                   9999999999887665421


Q ss_pred             C---------ceEEEEEccCCC---EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc---------------------
Q 001362          530 L---------GCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------------------  576 (1092)
Q Consensus       530 ~---------~i~~~~~s~dg~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------------------  576 (1092)
                      +         +........+|+   .++.+.    .++.++++|..+|+.+........                     
T Consensus       296 ~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~----~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~  371 (689)
T 1yiq_A          296 GDAWDYTATQHMILAELPIDGKPRKVLMQAP----KNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA  371 (689)
T ss_dssp             TCCSCCCCCSCEEEEEEEETTEEEEEEEECC----TTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred             cccccccCCCCcEEEeeccCCcEEEEEEEEC----CCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence            1         122222233565   555554    377899999999998744321110                     


Q ss_pred             ----c-----------CCceEEEEEcCCCCEEEEEeC-------------------------------------------
Q 001362          577 ----Q-----------HNSVSVVHFDTAKDQILAAGD-------------------------------------------  598 (1092)
Q Consensus       577 ----~-----------~~~v~~~~~~p~~~~l~~~s~-------------------------------------------  598 (1092)
                          .           ...-..++++|+...+++...                                           
T Consensus       372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~  451 (689)
T 1yiq_A          372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK  451 (689)
T ss_dssp             TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred             ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence                0           000112688898888877532                                           


Q ss_pred             --CCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccc
Q 001362          599 --DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL  663 (1092)
Q Consensus       599 --dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  663 (1092)
                        +|.|+.||+.+|+.+.....+..   +....+...+.++++++.||.++.||..+++.+..++..
T Consensus       452 ~~~g~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          452 SWSGKLIAWDPVKQQAAWEVPYVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             TCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CcceeEEEEECCCCCeEeEccCCCC---ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence              37899999999999988876532   333466677889999999999999999999988777644

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.05  E-value=9.5e-09  Score=112.65  Aligned_cols=302  Identities=11%  Similarity=0.048  Sum_probs=176.8

Q ss_pred             eEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE
Q 001362          445 NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD  524 (1092)
Q Consensus       445 ~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  524 (1092)
                      .+..+..++.   +..++.++.|..|| .+++.+.....+...+.++..  ..++ .+..++.+  +..+|. +++....
T Consensus        23 ~~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g-~l~v~t~~--l~~~d~-~g~~~~~   92 (330)
T 3hxj_A           23 SSPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDG-TIYFGSDK--VYAINP-DGTEKWR   92 (330)
T ss_dssp             CCCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTT-EECCSSCE--EEEECC-CGGGGGG
T ss_pred             cCceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCC-cEEEecCc--EEEECC-CCcEEEE
Confidence            3445556665   66677888999999 888887665544444555554  3344 45555544  777775 4343333


Q ss_pred             ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001362          525 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI  604 (1092)
Q Consensus       525 ~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~i  604 (1092)
                      +...........+.  +..++.++.    ++.|+.+|.. ++.........   ..+.++...+++. ++.++.++.|..
T Consensus        93 ~~~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~-l~vgt~~~~l~~  161 (330)
T 3hxj_A           93 FDTKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGT-IYVGSNDNYLYA  161 (330)
T ss_dssp             SCC-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSC-EEEECTTSEEEE
T ss_pred             EECCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCE-EEEEcCCCEEEE
Confidence            33222222223333  444555543    4569999988 77666555433   4455566666665 667778899999


Q ss_pred             EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccccccc
Q 001362          605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA  684 (1092)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  684 (1092)
                      +|.. ++.........  ..+.++...+++.+.+ ++  +.+..++ .+++.......                      
T Consensus       162 ~d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~----------------------  212 (330)
T 3hxj_A          162 INPD-GTEKWRFKTND--AITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYA----------------------  212 (330)
T ss_dssp             ECTT-SCEEEEEECSS--CCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECC----------------------
T ss_pred             ECCC-CCEeEEEecCC--CceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEcc----------------------
Confidence            9998 87776665432  2356666666666443 33  5566665 33221111000                      


Q ss_pred             CCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeec
Q 001362          685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP  764 (1092)
Q Consensus       685 ~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~  764 (1092)
                                                                                                      
T Consensus       213 --------------------------------------------------------------------------------  212 (330)
T 3hxj_A          213 --------------------------------------------------------------------------------  212 (330)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCC
Q 001362          765 RNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP  844 (1092)
Q Consensus       765 ~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~  844 (1092)
                                                          ....+.++++.++|.+.+...++.+..+|. +++.+..+.....
T Consensus       213 ------------------------------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~  255 (330)
T 3hxj_A          213 ------------------------------------GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKR  255 (330)
T ss_dssp             ------------------------------------SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSC
T ss_pred             ------------------------------------CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCC
Confidence                                                111233445555555554444556666653 4444444443333


Q ss_pred             CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001362          845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      .+.++.+.+ ++ .|.+++.+|.+..+|. +++.+..+......+.++...++|++. .++.+|.+++...+.
T Consensus       256 ~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          256 IESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFNLE  324 (330)
T ss_dssp             CCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC--
T ss_pred             ccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEeccc
Confidence            344556665 45 5666888888999996 677777666556667788887787654 478899998887665

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.05  E-value=4.1e-08  Score=106.77  Aligned_cols=240  Identities=12%  Similarity=0.077  Sum_probs=154.2

Q ss_pred             Eeec--CCCceEEEEEcCCCcEEEEecCCC--CeeEEeeeeeeecccccceeeEeeecC-CCCcEEEEEECCCCCEEEEE
Q 001362          340 MDFH--PVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       340 v~~s--pdg~~llasg~~d~~v~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~las~  414 (1092)
                      .+++  ++++++++.|..++.|.|+|+.+.  +......++.-+           +... .......+..+||| .++++
T Consensus        87 ~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~-----------~~~~~g~s~Ph~~~~~pdG-i~Vs~  154 (462)
T 2ece_A           87 PNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEE-----------VKKVSGYSRLHTVHCGPDA-IYISA  154 (462)
T ss_dssp             TTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHH-----------HHHHHCEEEEEEEEECSSC-EEEEE
T ss_pred             cccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhh-----------cccccCCCcccceeECCCe-EEEEc
Confidence            3457  899998899999999999999754  212111110000           0000 11245678899999 66666


Q ss_pred             eCC------CEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEe-------------------CCCcEE
Q 001362          415 YSK------HIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG-------------------DDKTIK  468 (1092)
Q Consensus       415 ~~d------~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~-------------------~d~~i~  468 (1092)
                      ..+      +.|.+.|.++++.+.... ..... .--..+.|+|+++  .+++..                   ...+|.
T Consensus       155 ~g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~  231 (462)
T 2ece_A          155 LGNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIH  231 (462)
T ss_dssp             EEETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEE
T ss_pred             CCCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEE
Confidence            444      689999999987665321 11222 2233588899999  677764                   368999


Q ss_pred             EEECCCCceeEEEecC-C-cCeEEEeecccCCccEEEEEe------cCCeEEEEEcCCCCce--EE--ecCC--------
Q 001362          469 VWDAVTGSRTYSFEGH-G-APVYSLCPHAKENIHFIFSIS------VDGKIKAWLYDSLGAR--VD--YDAP--------  528 (1092)
Q Consensus       469 vwd~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~--~~--~~~~--------  528 (1092)
                      +||+.+++.+.++... . .....+.|..++++++++.++      .+++|.+|..+.+...  ..  +...        
T Consensus       232 v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~  311 (462)
T 2ece_A          232 FWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPE  311 (462)
T ss_dssp             EEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCG
T ss_pred             EEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccc
Confidence            9999999888888653 1 234456665577888777766      4668887766542211  01  1110        


Q ss_pred             --------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC---CCeEEEEEeeccc-----------cCCceEEEEE
Q 001362          529 --------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES---EGAIKRTYQGLQL-----------QHNSVSVVHF  586 (1092)
Q Consensus       529 --------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~---~~~~~~~~~~~~~-----------~~~~v~~~~~  586 (1092)
                              ......+.+|+||++|+++..   +.+.|.++|+.   +.+.+..+.....           -.+....+++
T Consensus       312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~l  388 (462)
T 2ece_A          312 ILKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEI  388 (462)
T ss_dssp             GGGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEE
T ss_pred             cccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEE
Confidence                    234678999999999998764   35679999975   3345544443210           0013578899


Q ss_pred             cCCCCEEEEEe
Q 001362          587 DTAKDQILAAG  597 (1092)
Q Consensus       587 ~p~~~~l~~~s  597 (1092)
                      +|||++++++.
T Consensus       389 SpDGk~LyVaN  399 (462)
T 2ece_A          389 SRDGRRVYVTN  399 (462)
T ss_dssp             CTTSSEEEEEC
T ss_pred             cCCCCEEEEEc
Confidence            99999999987

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.03  E-value=6.2e-08  Score=109.36  Aligned_cols=345  Identities=11%  Similarity=0.046  Sum_probs=199.0

Q ss_pred             cEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe----------cCCeEEEEEcCCCCceEE
Q 001362          455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------VDGKIKAWLYDSLGARVD  524 (1092)
Q Consensus       455 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~  524 (1092)
                      ++.+.||+..|.++|+-+-+++.++.+......-. .-|-.+.....++..+          .+|.          ..  
T Consensus        15 ~~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~-~g~g~~~es~~~l~~~~~~~~~~~~~~~g~----------~~--   81 (595)
T 1fwx_A           15 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAANGK----------RI--   81 (595)
T ss_dssp             EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCCHHHHHHHHHTTC----------SS--
T ss_pred             EEEEeeCCcCceEEEEecCCcceEEEeeeecCCCC-cccCCchhHHHHHhccCCccchhhhhccCc----------ee--
Confidence            44688999999999999999999988863221000 0000000000000000          0010          00  


Q ss_pred             ecCCCCceEEEEE---ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEE-c-CCCCEEEEEe--
Q 001362          525 YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-D-TAKDQILAAG--  597 (1092)
Q Consensus       525 ~~~~~~~i~~~~~---s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~-p~~~~l~~~s--  597 (1092)
                      +......-..+++   .+||++++.+..   .+..|.+.|+.+.++...+.-..  ......+++ + |+++++++++  
T Consensus        82 ~~~gd~hh~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~  156 (595)
T 1fwx_A           82 HDNGDLHHVHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGED  156 (595)
T ss_dssp             CCCCCBCCEEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECS
T ss_pred             cccCCCCccccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEeccc
Confidence            0000001122333   248999998653   36679999999999888664322  245778887 5 9999999985  


Q ss_pred             ----------------CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001362          598 ----------------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       598 ----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                                      .++.+.+.|.++.+...++...+.   ...++++|+|+++++.+.+..-       +..+....
T Consensus       157 ~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~~~i~~~~  226 (595)
T 1fwx_A          157 ETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------GMTLPEMT  226 (595)
T ss_dssp             CEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------CSSHHHHT
T ss_pred             ccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------Ccchhhcc
Confidence                            345799999999999998886542   4678999999999999876321       00000000


Q ss_pred             cccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEE
Q 001362          662 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT  741 (1092)
Q Consensus       662 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~  741 (1092)
                      .  .....+.+-....                       ..                                      .
T Consensus       227 ~--~~~d~v~V~~~~~-----------------------~~--------------------------------------~  243 (595)
T 1fwx_A          227 A--AEMDHIVVFNIAE-----------------------IE--------------------------------------K  243 (595)
T ss_dssp             C--CSEEEEEEEEHHH-----------------------HH--------------------------------------H
T ss_pred             c--cccceEEEeeccc-----------------------ee--------------------------------------E
Confidence            0  0000011100000                       00                                      0


Q ss_pred             EecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCc-eeeecCCCCCCCCCeeEEEEecCCCEEEEE
Q 001362          742 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCFALSKNDAYLFSA  820 (1092)
Q Consensus       742 ~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~-~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~  820 (1092)
                      +.++|+....    +.+.+.|....+                    +.. +....     -.....++.++|||++++++
T Consensus       244 ~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip-----vg~~PhGv~~sPDGk~v~V~  294 (595)
T 1fwx_A          244 AIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP-----IANNPHGCNMAPDKKHLCVA  294 (595)
T ss_dssp             HHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE-----EESSCCCEEECTTSSEEEEE
T ss_pred             eccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe-----cCCCceEEEEcCCCCEEEEe
Confidence            0111111111    223343322100                    111 11111     12244578999999999988


Q ss_pred             e--CCeEEEEEcCCce------------eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC----------c
Q 001362          821 S--GGVISLYIVMTFK------------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------S  876 (1092)
Q Consensus       821 s--dg~i~iwd~~~~~------------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~----------~  876 (1092)
                      +  +++|.++|+.+.+            ...... -......++|+| +|...++..-|++|.+||+.+          .
T Consensus       295 ~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~  372 (595)
T 1fwx_A          295 GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD  372 (595)
T ss_dssp             CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCC
T ss_pred             CCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccc
Confidence            7  5889999998763            222332 345678999999 776666777899999999987          4


Q ss_pred             eeeEeeccccCCe-----EEEEEcCCCCEEEEEeC---CCc----------EEEEEcCCCcee
Q 001362          877 EVISKLEGHSKRV-----TGLVFSDALNILVSSGG---DAQ----------IFVWDVDGWGIQ  921 (1092)
Q Consensus       877 ~~~~~l~~h~~~V-----~~l~~spdg~~l~s~s~---Dg~----------i~iwd~~~~~~~  921 (1092)
                      +.+.++..|-.+-     ..+.++|||++|+++..   |+-          -.++|+++++..
T Consensus       373 ~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~  435 (595)
T 1fwx_A          373 PIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV  435 (595)
T ss_dssp             CEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred             eeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence            5677776664432     22356899999998753   543          188999765533

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.03  E-value=9.7e-09  Score=112.59  Aligned_cols=270  Identities=11%  Similarity=0.056  Sum_probs=173.6

Q ss_pred             ceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001362          337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  416 (1092)
Q Consensus       337 V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~  416 (1092)
                      ..++.+..+|.  +..|+.++.|..|| .+++.+....                   .+...+.++...++|.+.+ ++.
T Consensus        22 ~~~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~~~-------------------~~~~~~~~~~~~~~g~l~v-~t~   78 (330)
T 3hxj_A           22 DSSPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWFFK-------------------SGEIIECRPSIGKDGTIYF-GSD   78 (330)
T ss_dssp             CCCCEECTTSC--EECSSTTTTTEEEC-TTSCEEESSC-------------------GGGEEEECCEETTTTEECC-SSC
T ss_pred             ccCceEccCCe--EEEEcCCCEEEEEC-CCCcEEEEEe-------------------cCCCcccceEEecCCcEEE-ecC
Confidence            34556667786  45667788999999 8887654311                   1234456777777776444 444


Q ss_pred             CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeeccc
Q 001362          417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK  496 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  496 (1092)
                      +  |..+|. +++.+...   ...........+. ++   .+..++.++.|..+|.. ++.......+...+.++..  .
T Consensus        79 ~--l~~~d~-~g~~~~~~---~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~  145 (330)
T 3hxj_A           79 K--VYAINP-DGTEKWRF---DTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--S  145 (330)
T ss_dssp             E--EEEECC-CGGGGGGS---CC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--C
T ss_pred             c--EEEECC-CCcEEEEE---ECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--c
Confidence            4  888886 55543321   1122223333343 44   46778888999999988 8877777655555555555  3


Q ss_pred             CCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc
Q 001362          497 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL  576 (1092)
Q Consensus       497 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~  576 (1092)
                      +++ .++.++.++.|..+|.. ++...........+.++.+.+++...+..       +.|+.+| .+++....+.... 
T Consensus       146 ~~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-------~~l~~~d-~~g~~~~~~~~~~-  214 (330)
T 3hxj_A          146 EDG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-------DKVYAIN-PDGTEKWNFYAGY-  214 (330)
T ss_dssp             TTS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-------SSEEEEC-TTSCEEEEECCSS-
T ss_pred             CCC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-------CEEEEEC-CCCcEEEEEccCC-
Confidence            344 46678888999999988 66666665555566777787888765543       2399999 7777666555433 


Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCce
Q 001362          577 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS  656 (1092)
Q Consensus       577 ~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~  656 (1092)
                        ..+.++...+++ .+.+++.++.+..+|. +++.+........  .+..+.+.+++ .+.+++.+|.+..++. +++.
T Consensus       215 --~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~  286 (330)
T 3hxj_A          215 --WTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTE  286 (330)
T ss_dssp             --CCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEECT-TSCE
T ss_pred             --cceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEECC-CCcE
Confidence              557777888776 4666777888888874 5666666654432  23455665555 5667888889999985 5555


Q ss_pred             eeecc
Q 001362          657 VDAAG  661 (1092)
Q Consensus       657 ~~~~~  661 (1092)
                      .....
T Consensus       287 ~~~~~  291 (330)
T 3hxj_A          287 KWNFE  291 (330)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            54443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.96  E-value=7.7e-10  Score=122.76  Aligned_cols=190  Identities=7%  Similarity=-0.034  Sum_probs=112.6

Q ss_pred             CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001362          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  486 (1092)
                      ++..+++++.|+.|+.||..+|+.+-   .+..  +.+.+..+..++.  ++++++.|+.|+.||.++|+.+..+..+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence            67899999999999999999998664   3333  4566666677777  577778999999999999998877654322


Q ss_pred             CeEEEeecccC-CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001362          487 PVYSLCPHAKE-NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       487 ~v~~~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      ....  ..|.- ++..+++++.++.++.||..+++.+..+..+.    ...++|++..+++++.    ++.|+.||..+|
T Consensus        81 ~~~~--~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG  150 (369)
T 2hz6_A           81 ELVQ--ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR  150 (369)
T ss_dssp             HHHT--TCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred             cccc--cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence            1111  11111 33578888999999999999988877665543    2345678888888765    667999999999


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001362          566 AIKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~~~s~dg~i~iwd~~~~~~~~~~~~  618 (1092)
                      +.+..+....     .....+.++.   ..+++++.+|.++.||..+|+.+.....
T Consensus       151 ~~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  201 (369)
T 2hz6_A          151 ELRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY  201 (369)
T ss_dssp             SCCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred             CEEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence            8776655322     1122233332   5678889999999999999999887764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.93  E-value=0.00015  Score=85.40  Aligned_cols=458  Identities=9%  Similarity=-0.018  Sum_probs=230.4

Q ss_pred             CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001362          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      -..+..++|++.+.+++.+-...+.|..++++.......                  ++...-..+..+|+.+.+..|+.
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~~ly~  100 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYW  100 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTTEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCCEEEE
Confidence            346889999997776666656678888888876532110                  12223357889999997666665


Q ss_pred             E-eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEE-eCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001362          414 A-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       414 ~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~  491 (1092)
                      + ...+.|.+.++.+... +.  .+...-.....+++.|.+.. ++++- +..+.|...+++...........-...+.+
T Consensus       101 ~d~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl  176 (619)
T 3s94_A          101 TDSETNRIEVSNLDGSLR-KV--LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL  176 (619)
T ss_dssp             EETTTTEEEEEETTSCSC-EE--EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred             EeCCCCEEEEEECCCCCE-EE--EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence            5 4568899999986432 21  12233445778999997664 33433 334677777765433322232334456778


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001362          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1092)
                      ++.+. ++.+.++-...+.|...|++.................+++..+  .++.+-.   ..+.|...|..+|+....+
T Consensus       177 ald~~-~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          177 TLDYE-EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTGEGLREI  250 (619)
T ss_dssp             EEETT-TTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSCCCCEEC
T ss_pred             EEEcc-CCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCCcccEEE
Confidence            88543 3345555556678888888754433322212222345666544  5555432   2455888887776543322


Q ss_pred             eec-----------c--cc---------CCceEEEEE-----------cCCC---------------CEEEEEeCCCcEE
Q 001362          572 QGL-----------Q--LQ---------HNSVSVVHF-----------DTAK---------------DQILAAGDDHVIK  603 (1092)
Q Consensus       572 ~~~-----------~--~~---------~~~v~~~~~-----------~p~~---------------~~l~~~s~dg~i~  603 (1092)
                      ...           .  +.         .+....+++           .|.|               .+|+.+ ..+.|+
T Consensus       251 ~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~  329 (619)
T 3s94_A          251 HSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLR  329 (619)
T ss_dssp             CSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEE
T ss_pred             ecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceE
Confidence            110           0  00         000001111           1111               122222 234566


Q ss_pred             EEECCCCceEE-EEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccc
Q 001362          604 IWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA  681 (1092)
Q Consensus       604 iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  681 (1092)
                      ..++....... .+.. .....+..++|++.+..|..+ ...+.|+.++...................+++.+.      
T Consensus       330 ~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~------  402 (619)
T 3s94_A          330 RISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWV------  402 (619)
T ss_dssp             EEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT------
T ss_pred             EEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecc------
Confidence            66665443211 1111 122345678898855555544 45788888887754332222222233344444421      


Q ss_pred             cccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC--CeeE
Q 001362          682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHL  759 (1092)
Q Consensus       682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~  759 (1092)
                                     .+++..+-...+.|.+.+++...   ...+. .  ........+++.|....|+.+...  +.|.
T Consensus       403 ---------------~~~lY~tD~~~~~I~v~~~~G~~---~~~l~-~--~~l~~P~~iavdp~~G~ly~tD~g~~~~I~  461 (619)
T 3s94_A          403 ---------------ARNLYWTDTGTDRIEVTRLNGTM---RKILI-S--EDLEEPRAIVLDPMVGYMYWTDWGEIPKIE  461 (619)
T ss_dssp             ---------------TTEEEEEETTTTEEEEEETTSCS---CEEEE-C--TTCCSEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             ---------------cCcEEEEeCCCCcEEEEeCCCCe---EEEEE-E--CCCCCeeeEEEEcCCCcEEEecCCCCCEEE
Confidence                           23344444444555555544211   11111 0  123457789999864444444322  3333


Q ss_pred             EEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeE
Q 001362          760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTIL  837 (1092)
Q Consensus       760 lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~  837 (1092)
                      ..+++..       .              ..... .    ..-.....++++++++.|..+.  .+.|..+++.......
T Consensus       462 r~~~dG~-------~--------------~~~l~-~----~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~  515 (619)
T 3s94_A          462 RAALDGS-------D--------------RVVLV-N----TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV  515 (619)
T ss_dssp             EEETTSC-------S--------------CEEEE-C----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE
T ss_pred             EEccCCC-------c--------------cEEEE-e----CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEE
Confidence            3332211       0              00010 0    1234567899999888887776  3779889886443322


Q ss_pred             EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001362          838 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  876 (1092)
Q Consensus       838 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  876 (1092)
                      .+...-.....+++..  +.+..+-...+.|...|..+|
T Consensus       516 ~~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          516 LVEDKIPHIFGFTLLG--DYVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             EEECCCCSSCCEEEET--TEEEEECTTSSCEEEEESSSC
T ss_pred             EeccCCCCcEEEEEEC--CEEEEeecCCCeEEEEEcCCC
Confidence            2222222334555543  334443344456666666665

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.93  E-value=0.0006  Score=85.85  Aligned_cols=617  Identities=9%  Similarity=0.039  Sum_probs=305.1

Q ss_pred             ceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC----CCEEE
Q 001362          337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLLG  412 (1092)
Q Consensus       337 V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd----g~~la  412 (1092)
                      -+|+++-.+|  +|..|+..|.=.+|.+.....-...-+.+-|            --..-++|..++.-..    ...|+
T Consensus       329 ~ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~i~  394 (1158)
T 3ei3_A          329 AECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQLV  394 (1158)
T ss_dssp             CSEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCEEE
T ss_pred             ccEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCeEE
Confidence            3566666666  4777888777777777643210000000000            1113467777776431    23555


Q ss_pred             EEe---CCCEEEEEEccCCCcccceEEEcccccceeEEEEec---CCCcEEEEEEeCCCcEEEEECCCCceeEEEe--cC
Q 001362          413 VAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GH  484 (1092)
Q Consensus       413 s~~---~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~--~~  484 (1092)
                      +++   .+|.+++..-.-+-.......+.+ ...++.+....   ...  +|+.+..+.+ .|+.+. ++.+..+.  +.
T Consensus       395 ~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~~gf  469 (1158)
T 3ei3_A          395 TCSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETELMGF  469 (1158)
T ss_dssp             EEECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECCTTC
T ss_pred             EEECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCcccccccccc
Confidence            543   457788765432211111112222 23455555432   233  5665555555 455432 22333321  11


Q ss_pred             CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001362          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      ......++...-++ ..++=... ..|++.+.........+.... ..|...+.+  +.+++.+.     .+.+.++++.
T Consensus       470 ~~~~~TL~~~~l~~-~~ivQVt~-~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-----g~~l~~fel~  540 (1158)
T 3ei3_A          470 VDDQQTFFCGNVAH-QQLIQITS-ASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-----GRALYYLQIH  540 (1158)
T ss_dssp             CSSSCEEEEEEETT-TEEEEEES-SCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-----TTEEEEEEEE
T ss_pred             cCCCCcEEEEEcCC-CeEEEEec-CEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-----CCEEEEEEee
Confidence            11111111111111 12222222 235666655444555555443 356655544  34555553     1236667766


Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCC------CCEEEEEeC-CCcEEEEECCCCceEEEEeCCCCCCCCceEEEc--cCC
Q 001362          564 EGAIKRTYQGLQLQHNSVSVVHFDTA------KDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN--KNG  634 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~p~------~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s--~~~  634 (1092)
                      .++...... .. -...|.|+++.|.      ..++++|.. |++++|+++.+.+.+........ ....++.+.  ...
T Consensus       541 ~~~L~~~~~-~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~  617 (1158)
T 3ei3_A          541 PQELRQISH-TE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESS  617 (1158)
T ss_dssp             TTEEEEEEE-EE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTE
T ss_pred             CCceeeecc-cC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCC
Confidence            554433221 11 1367999998764      368888886 99999999998777765544321 123344333  234


Q ss_pred             CEEEEEeCCCeEEEEECC--CCceeee--cccccCceeeeeecC----------CCccccccccCC--------------
Q 001362          635 TLLAVIANENRIKILETP--ESNSVDA--AGVLSDNLRKLSVNP----------ISTVTGAGIANG--------------  686 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~--~~~~~~~--~~~~~~~v~~~~~~~----------~~~~~~~~~~~~--------------  686 (1092)
                      .+|.+|-.||.+.-+.+.  ++.....  ..-...++.-..+..          ..+.+... ..+              
T Consensus       618 ~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~-~~~~l~~s~l~~~~v~~  696 (1158)
T 3ei3_A          618 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYS-SNHKLVFSNVNLKEVNY  696 (1158)
T ss_dssp             EEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEE-SSSSEEEEEBSSSCCCE
T ss_pred             cEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEE-cCCceEEeccChHHhce
Confidence            678899999998766554  3322211  000011111111110          11111000 011              


Q ss_pred             ceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCC
Q 001362          687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN  766 (1092)
Q Consensus       687 ~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~  766 (1092)
                      ...|+....|+|  ++ +..++.+++..++....-....+     .-...+..++++|+.+.++.+..+...  ++....
T Consensus       697 ~~~F~se~~~~g--~v-~~~~~~LrI~~i~~~~~~~~~~i-----pL~~Tprri~y~~~~~~~~v~~~~~~~--~~~~~~  766 (1158)
T 3ei3_A          697 MCPLNSDGYPDS--LA-LANNSTLTIGTIDEIQKLHIRTV-----PLYESPRKICYQEVSQCFGVLSSRIEV--QDTSGG  766 (1158)
T ss_dssp             EEEECCSSSTTE--EE-EECSSCEEEEEECCSSSEEEEEE-----ECSSEEEEEEEEGGGTEEEEEEEEEEE--ECSSSS
T ss_pred             EeccCcccCCCc--EE-EEcCCceEEEEecccCCeeEEEE-----eCCCCceEEEEcCCCCEEEEEEEeccc--cccccc
Confidence            111222212222  22 22335577777643221111111     124577899999998877666543211  111000


Q ss_pred             -----------------------------CcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE---EecC-
Q 001362          767 -----------------------------DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA---LSKN-  813 (1092)
Q Consensus       767 -----------------------------~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~---~s~d-  813 (1092)
                                                   ....-+.......+++.|+.+...+....+..   ...+.+++   |..+ 
T Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~---nE~~~sv~~v~~~~~~  843 (1158)
T 3ei3_A          767 TTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ---NEYALSLVSCKLGKDP  843 (1158)
T ss_dssp             EEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT---TEEEEEEEEECCTTCC
T ss_pred             cchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC---CcceEEEEEEEEccCC
Confidence                                         00000111223457788888887676666653   33444444   3333 


Q ss_pred             CCEEEEEe-----------CCeEEEEEcCCceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe
Q 001362          814 DAYLFSAS-----------GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK  881 (1092)
Q Consensus       814 g~~l~~~s-----------dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~  881 (1092)
                      ..++++|.           .|.|.+|++..++...... ...+.+++++--  +|++|| |- ..+|++|++...+.+..
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla-~i-g~~l~vy~l~~~~~L~~  919 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLA-SI-NSTVRLYEWTTEKELRT  919 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEE-EE-TTEEEEEEECTTSCEEE
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEE-Ec-CCEEEEEECCCCceEEE
Confidence            46888774           2569999987544322211 235678887754  454444 43 47899999986654331


Q ss_pred             eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEE
Q 001362          882 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI  961 (1092)
Q Consensus       882 l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~l  961 (1092)
                      -..+-..|..+.....+++++.|..-..|.+...+..+... ..+..-.. .   .+++++.|-.++.++++-.++.+.+
T Consensus       920 ~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L-~~~a~D~~-~---~~vta~~~ld~~t~l~aD~~gNl~v  994 (1158)
T 3ei3_A          920 ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNF-EEIARDFN-P---NWMSAVEILDDDNFLGAENAFNLFV  994 (1158)
T ss_dssp             EEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEE-EEEEECCS-C---BCEEEEEEEETTEEEEEETTSEEEE
T ss_pred             EeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeE-EEEEeecc-c---ccEEEEEEEccCcEEEEcCCCcEEE
Confidence            11122223333333457899999888888887665432111 12221111 1   3689999987776666556788888


Q ss_pred             EEcCCc-------eeeeeeccCC-CCCEEEEEE---ecC---------CCEEEEEECCCcEEEEEc
Q 001362          962 YEAEEL-------TCLKQWFPIS-SVPISQATF---SCD---------CRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       962 wd~~~~-------~~~~~~~~~h-~~~v~~l~f---s~d---------g~~l~t~~~Dg~i~vwd~ 1007 (1092)
                      +.....       +.+.....-| ...|+++.-   .+.         ...++.++.+|+|.+.-.
T Consensus       995 l~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A          995 CQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp             EEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred             EecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence            876531       2222111112 566777652   222         234677888998887643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.92  E-value=4.6e-10  Score=124.57  Aligned_cols=191  Identities=9%  Similarity=0.052  Sum_probs=109.2

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC
Q 001362          855 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT  934 (1092)
Q Consensus       855 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  934 (1092)
                      ++..|++++.||.|+.||..+|+.+.++..  +.+.+..+.+++..+++++.|+.|+.||..+++.............. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~-   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ-   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence            456889999999999999999999988876  56666666778888888889999999999887643211111100000 


Q ss_pred             CCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEE
Q 001362          935 LAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1092)
Q Consensus       935 ~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~ 1014 (1092)
                           .+..+..++..++.+.++.++.||..+|+.+..+.. +.    ...++|++..|++++.|+.|+.||..+|+.+.
T Consensus        85 -----~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W  154 (369)
T 2hz6_A           85 -----ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW  154 (369)
T ss_dssp             -----TCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred             -----cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence                 011112344433336789999999999998766432 22    24567788899999999999999999999877


Q ss_pred             eeccccccCCCCccCcccceEEEECCC--CCCEEEEEeCCCcEEEEeCCCCCCccccC
Q 001362         1015 RILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1070 (1092)
Q Consensus      1015 ~~~~~~~~~~~~~~~~v~~~~~~~~p~--~~~~l~~~~~dg~v~~w~~~~~~~~~~~~ 1070 (1092)
                      ++....+..            .+++++  -...+++++.||.|+.||....+..|...
T Consensus       155 ~~~~~~~~~------------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          155 NATYFDYAA------------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             EEEEEEECC------------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             eEecccccC------------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            665222111            112210  01567888999999999998888888765

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.87  E-value=0.00048  Score=81.10  Aligned_cols=535  Identities=9%  Similarity=-0.020  Sum_probs=276.5

Q ss_pred             eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-eCCCEEEEEEcc
Q 001362          348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYH  426 (1092)
Q Consensus       348 ~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~  426 (1092)
                      +|+.+  ....|+..++.+........                 + ..-..+..++|++.+..|..+ ..++.|..+++.
T Consensus         8 ~Ll~s--~~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~   67 (628)
T 4a0p_A            8 FLLFS--RRADIRRISLETNNNNVAIP-----------------L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMN   67 (628)
T ss_dssp             EEEEE--ETTEEEEEESSCTTCEEECC-----------------C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEEE--eCCcEEEEECCCCCcceEEE-----------------c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence            34444  34788999988765332111                 1 123468899999977666655 456889999987


Q ss_pred             CCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEE-
Q 001362          427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-  505 (1092)
Q Consensus       427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-  505 (1092)
                      .... ..  .+.........+++.+.+.. ++++-...+.|.+.+++.......+...-.....+++.|. +|.++++- 
T Consensus        68 g~~~-~~--v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~  142 (628)
T 4a0p_A           68 GSAL-EH--VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW  142 (628)
T ss_dssp             SCSC-EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred             CCCc-EE--EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence            6432 21  22222245678999877665 4556666788999997655433233233445678888654 33444443 


Q ss_pred             ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001362          506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH  585 (1092)
Q Consensus       506 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  585 (1092)
                      +..+.|...+++......... .......+++++++..|+.+-.   +.+.|...|+..... ..+....   .....++
T Consensus       143 g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l---~~P~gla  214 (628)
T 4a0p_A          143 GGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDL---PHPFGLT  214 (628)
T ss_dssp             SSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECC---SCEEEEE
T ss_pred             CCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccC---CCceEEE
Confidence            235678888877655444433 4456789999999888887753   356799999875444 3333322   3456777


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE-EEccCCCEEEEEeCCCeEEEEECCCCce--eeeccc
Q 001362          586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIANENRIKILETPESNS--VDAAGV  662 (1092)
Q Consensus       586 ~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~  662 (1092)
                      +.. +..+++-...+.|...|..+++....+.....  ....+ .+++..+.   + .+..    ...++.+  +.... 
T Consensus       215 v~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~-~n~C----~~~ng~C~~~C~~~-  282 (628)
T 4a0p_A          215 QYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G-WNEC----ASSNGHCSHLCLAV-  282 (628)
T ss_dssp             EET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C-CCTT----TTTGGGCSSEEEEE-
T ss_pred             EEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c-ceEe----ccCCCCcchhhhcC-
Confidence            764 33334444578898899888776666543211  12233 22221110   0 0000    0000000  00000 


Q ss_pred             ccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEE
Q 001362          663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY  742 (1092)
Q Consensus       663 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  742 (1092)
                      ....-.  ..+|.+-.+....   ....    .+ ...++.+. ...|+-..+.....   ....++. .....+.+++|
T Consensus       283 ~~~~~~--C~C~~g~~l~~d~---~~C~----~~-~~~Ll~s~-~~~i~~i~l~~~~~---~~~~l~~-~~~~~~~~ld~  347 (628)
T 4a0p_A          283 PVGGFV--CGCPAHYSLNADN---RTCS----AP-TTFLLFSQ-KSAINRMVIDEQQS---PDIILPI-HSLRNVRAIDY  347 (628)
T ss_dssp             TTTEEE--EECSTTCEECTTS---SCEE----CC-SSEEEEEE-TTEEEEECCCTTCC---CCEECCC-TTCSCEEEEEE
T ss_pred             CCCCee--EEcCCCcEecccC---CcCc----cc-cceeeeec-cceEEEEecccccC---ceEEEEe-hhcCCceEEEE
Confidence            000000  0111111110000   0000    11 12222222 23343333321110   0111111 12345778999


Q ss_pred             ecCCcEEEEeec-CCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe
Q 001362          743 NNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS  821 (1092)
Q Consensus       743 s~~g~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s  821 (1092)
                      .+....|+.+.. .+.|..++......                    ..+.............+..+++...++.|..+.
T Consensus       348 d~~~~~iy~sD~~~~~I~r~~~~g~~~--------------------~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td  407 (628)
T 4a0p_A          348 DPLDKQLYWIDSRQNMIRKAQEDGSQG--------------------FTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTC  407 (628)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSC--------------------EEEEC--------CCCEEEEEEETTTTEEEEEE
T ss_pred             ecCCCeEEEEecCcceEEEEEcCCCCc--------------------eEEEEcccccccccCCcceEEeeccCCeEEEEc
Confidence            887665655543 45666554322100                    001000000000234578999999877776665


Q ss_pred             --CCeEEEEEcCCceeeEEe-cCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEEcCCceeeEeeccccCCeEEEEEcC
Q 001362          822 --GGVISLYIVMTFKTILTI-MPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKLEGHSKRVTGLVFSD  896 (1092)
Q Consensus       822 --dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp  896 (1092)
                        .+.|.+.++. |+....+ ........++++.|..+.++.+-....  .|...+++...........-.....|++.+
T Consensus       408 ~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~  486 (628)
T 4a0p_A          408 EATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDS  486 (628)
T ss_dssp             TTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEET
T ss_pred             CCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeC
Confidence              4789999986 4444443 334467899999995555555543333  566666653332222232344578999999


Q ss_pred             CCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeee
Q 001362          897 ALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ  972 (1092)
Q Consensus       897 dg~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~  972 (1092)
                      +++.|..+. ..+.|...+++.....   .+..  +..   ....++++.. +.+..+ ...+.|...|..+|+....
T Consensus       487 ~~~~LYw~D~~~~~I~~~~~dG~~r~---~~~~--~~~---~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~  555 (628)
T 4a0p_A          487 RLGKLFWADSDLRRIESSDLSGANRI---VLED--SNI---LQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTK  555 (628)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCE---EEEC--SSC---SCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEE
T ss_pred             CCCEEEEEeCCCCEEEEEeCCCCceE---EEEc--CCC---CCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEE
Confidence            876666554 4578999998764321   1211  111   1345676654 333333 2445677777666654433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.86  E-value=1.2e-06  Score=104.83  Aligned_cols=375  Identities=14%  Similarity=0.137  Sum_probs=206.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcCe-----------EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001362          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY  525 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  525 (1092)
                      .++.++.++.|..+|..+|+.+.++.......           ..+++    .+..++.++.|+.|..+|..+++.+...
T Consensus        68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            46667778899999999999998875432211           11122    2357888899999999999999988766


Q ss_pred             cCCCC----ceEEEEEccCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeeccc-----------------------
Q 001362          526 DAPGL----GCTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL-----------------------  576 (1092)
Q Consensus       526 ~~~~~----~i~~~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~-----------------------  576 (1092)
                      .....    .+.+.-.-.++ .++++....  ..++.|+.+|..+|+.+-.+.....                       
T Consensus       144 ~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~  222 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY  222 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred             ccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence            54211    11110011134 455443221  1257899999999999887753210                       


Q ss_pred             -----cCCceEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceEEEEeCCCCC-------CCC
Q 001362          577 -----QHNSVSVVHFDTAKDQILAAGDDHV-------------------IKIWDMNKVQLLTTIDAGGGL-------PEN  625 (1092)
Q Consensus       577 -----~~~~v~~~~~~p~~~~l~~~s~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~v  625 (1092)
                           +......+++.|+...++.++.++.                   |..+|..+|+.+.......+.       ...
T Consensus       223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~  302 (668)
T 1kv9_A          223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI  302 (668)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred             eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc
Confidence                 0011124678888889988887763                   999999999999888753221       111


Q ss_pred             ceEEEccCCC---EEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccce
Q 001362          626 PRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI  702 (1092)
Q Consensus       626 ~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~  702 (1092)
                      ....+..+|+   .+++++.+|.++++|..+++.+......... +...+.+         ..+..........+++.  
T Consensus       303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~d~---------~~g~p~~~~~~~~~~~~--  370 (668)
T 1kv9_A          303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT-WAEKVDL---------ATGRPVEAPGVRYEKEP--  370 (668)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC-SEEEECT---------TTCCEEECTTTTCSSSC--
T ss_pred             EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccc-ccccccc---------ccCCccccccccccCCe--
Confidence            1122234665   6888999999999999999887554322210 0111110         00000000000000000  


Q ss_pred             eeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCcc
Q 001362          703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL  782 (1092)
Q Consensus       703 s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~  782 (1092)
                                            .+..|.......-..++++|+...+++...+-...+ ....               ..
T Consensus       371 ----------------------~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~-~~~~---------------~~  412 (668)
T 1kv9_A          371 ----------------------IVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVY-RNEG---------------KD  412 (668)
T ss_dssp             ----------------------EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE-CCCG---------------GG
T ss_pred             ----------------------eEECCCCccccCCCcceECCCCCEEEEeccccceEe-eeec---------------cc
Confidence                                  000111001111123678888777666555422211 1000               00


Q ss_pred             ccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE-EEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001362          783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA  860 (1092)
Q Consensus       783 w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~-~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la  860 (1092)
                      |....+.  .        ....     +  .+..++ ... +|.|..||..+++.+.+...+.. .....+.. .+.+++
T Consensus       413 ~~~~~~~--~--------~g~~-----~--~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t-~gg~vf  473 (668)
T 1kv9_A          413 FVTRKAF--N--------TAAG-----F--ADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVF  473 (668)
T ss_dssp             CCCCSSC--C--------CSSC-----G--GGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEE
T ss_pred             ccccccc--c--------cCcc-----c--cccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-CcCceeEe-CCCEEE
Confidence            1100000  0        0000     0  011111 122 47899999999998877654332 22233333 466888


Q ss_pred             EEeCCCcEEEEEcCCceeeEeeccccCCe-EEEEEcCCCC-EEEEEe
Q 001362          861 IGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSSG  905 (1092)
Q Consensus       861 sg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~-~l~s~s  905 (1092)
                      +|+.||.++.||..+|+.+..+....+.. .-+.+..+|+ +++.++
T Consensus       474 ~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          474 QGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            89999999999999999998887543211 2234455776 444443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.86  E-value=1.1e-07  Score=107.50  Aligned_cols=235  Identities=9%  Similarity=0.016  Sum_probs=159.1

Q ss_pred             cCCCEEEEEe--CCeEEEEEcCCceeeEEecCC-CCCeEEEEE-c-CCCCCEEEEEe------------------CCCcE
Q 001362          812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAF-N-PHDNNVIAIGM------------------DDSTI  868 (1092)
Q Consensus       812 ~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~d~~~lasg~------------------~dg~v  868 (1092)
                      +||+++.+..  ++.|.+.|+.+.++...+.-. ......+++ + | +++++++++                  .++.+
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence            4899998876  477999999999988855433 346788888 5 8 788888884                  34589


Q ss_pred             EEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC--------------------------------------cE
Q 001362          869 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA--------------------------------------QI  910 (1092)
Q Consensus       869 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--------------------------------------~i  910 (1092)
                      .++|..+.+.+.++.--. ....++++|||+++++.+.+.                                      .|
T Consensus       178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            999999999888876322 356788999999999988653                                      35


Q ss_pred             EEEEcCC--CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCCcEEEEEcCCce------------eeeeec
Q 001362          911 FVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT------------CLKQWF  974 (1092)
Q Consensus       911 ~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~------------~~~~~~  974 (1092)
                      .|.|..+  +... ...+....       ...++.++|||++++++  .+++|.++|+.+.+            ......
T Consensus       257 ~VID~~~~~~~~~-~~~Ipvg~-------~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~  328 (595)
T 1fwx_A          257 KVVDGRKEASSLF-TRYIPIAN-------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  328 (595)
T ss_dssp             EEEECSGGGCCSS-EEEEEEES-------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred             EEEeCcccCCcee-EEEEecCC-------CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence            5666655  2110 11122211       35679999999999985  56789999999663            222222


Q ss_pred             cCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC----------CceEEeeccccccCCCCccCcccceEEEECCCCCC
Q 001362          975 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1044 (1092)
Q Consensus       975 ~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~ 1044 (1092)
                        -......++|++||...++..-|+.|.+||+.+          ...+.++... +.|.+    .-.++..+.+| |++
T Consensus       329 --vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqpGh----~~~~~g~t~~~-DGk  400 (595)
T 1fwx_A          329 --LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQPGH----LKTVMGETLDA-TND  400 (595)
T ss_dssp             --CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCEEE----EEETTTTSTTC-CSS
T ss_pred             --CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-ccccc----ceeccceEeCC-CCC
Confidence              246788999999994445566899999999987          4445444421 11111    11223345677 688


Q ss_pred             EEEEEeCCC--cE-----------EEEeCCCCC
Q 001362         1045 QFAVGLTNG--EV-----------YVIEPNEPG 1064 (1092)
Q Consensus      1045 ~l~~~~~dg--~v-----------~~w~~~~~~ 1064 (1092)
                      +|+++..-.  .+           .++|++..+
T Consensus       401 ~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          401 WLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             EEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            888876532  23           788884333

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.86  E-value=6.6e-06  Score=86.50  Aligned_cols=224  Identities=12%  Similarity=0.043  Sum_probs=143.8

Q ss_pred             CcEEEEEECCCCCEEEEEe-CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001362          397 VSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      ..+..++|++++..|..+. .++.|..++..++....   .+.........+++.+++.. ++++....+.|.+++++..
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence            4578999999777666654 56789999998654211   22222246789999998664 4556666789999997654


Q ss_pred             ceeEEEecCCcCeEEEeecccCCccEEEEEec--CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001362          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      ...............+++.+. ++.++++...  .+.|..++++.................+++++++..|+.+..   +
T Consensus       112 ~~~~~~~~~~~~P~~i~vd~~-~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~  187 (267)
T 1npe_A          112 QRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G  187 (267)
T ss_dssp             SCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred             CEEEEEECCCCCccEEEEeeC-CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence            322222222245677888543 2333444333  468888888754433333233346788999999888877653   2


Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001362          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      .+.|..+|.........+.+.    .....++..  +..++.+. ..+.|.++|..+++.+..+.... ......+++.|
T Consensus       188 ~~~I~~~~~~g~~~~~~~~~~----~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~  260 (267)
T 1npe_A          188 THRAECLNPAQPGRRKVLEGL----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIAL  260 (267)
T ss_dssp             TTEEEEEETTEEEEEEEEECC----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEEC
T ss_pred             CCEEEEEecCCCceEEEecCC----CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecC
Confidence            567999998765544443321    234566654  45565554 56899999999999988886432 12357788888


Q ss_pred             CCC
Q 001362          633 NGT  635 (1092)
Q Consensus       633 ~~~  635 (1092)
                      ++.
T Consensus       261 ~~~  263 (267)
T 1npe_A          261 SQC  263 (267)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.83  E-value=1e-05  Score=85.01  Aligned_cols=258  Identities=11%  Similarity=0.012  Sum_probs=156.7

Q ss_pred             CCEEEEEeCCCEEEEEEccCCCccc--ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001362          408 GSLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  485 (1092)
                      |.+|+.+.. +.|+.+++.+.....  ....+......+..++|++++.. ++++....+.|.+++...+.....+....
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~   78 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL   78 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred             CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence            345666553 468889987654211  01112222345789999997764 45566667899999987665433333333


Q ss_pred             cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001362          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      .....+++.+. ++.+.++....+.|.+++++.................++++|++..|+.+.... ..+.|+.++....
T Consensus        79 ~~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~  156 (267)
T 1npe_A           79 GSPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT  156 (267)
T ss_dssp             CCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC
T ss_pred             CCccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCC
Confidence            45678888543 234555666678999999876544333333334678899999877766654321 1356888887543


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001362          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      . ...+....  ......+++++++..|+.+. ..+.|.++|.........+...   .....++.. ++.++++...++
T Consensus       157 ~-~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d-~~~lyva~~~~~  229 (267)
T 1npe_A          157 N-RRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY-GKNLYYTDWKTN  229 (267)
T ss_dssp             C-CEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE-TTEEEEEETTTT
T ss_pred             C-cEEEEECC--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe-CCEEEEEECCCC
Confidence            2 22332111  24678899999887776654 5678999999765544444321   223456654 344444444568


Q ss_pred             eEEEEECCCCceeeeccccc-CceeeeeecCCC
Q 001362          645 RIKILETPESNSVDAAGVLS-DNLRKLSVNPIS  676 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~  676 (1092)
                      .|..++..+++.+..+.... .....+++.|..
T Consensus       230 ~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             EEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             eEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence            99999999887776665332 234555555443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.83  E-value=0.0012  Score=83.16  Aligned_cols=572  Identities=10%  Similarity=0.089  Sum_probs=279.8

Q ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEEccCCCc-----ccceEEEcccccceeEEEEecCC---CcEEEEEEe---CCCcE
Q 001362          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPC---KQISVITCG---DDKTI  467 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~~~~s~d~---~~l~l~s~~---~d~~i  467 (1092)
                      ..++++-.+| +|..|+..|.=.+|.+.....     +....++ ..-++|.+++.....   .. .+++++   .+|.+
T Consensus       329 ~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gsL  405 (1158)
T 3ei3_A          329 AECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGSL  405 (1158)
T ss_dssp             CSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCEE
T ss_pred             ccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCeE
Confidence            3567776555 788888877777777764321     1222233 244688888875421   21 233332   56788


Q ss_pred             EEEECCCC-ceeEEEec-CCcCeEEEeecc-cCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CceEEEEEcc-CC
Q 001362          468 KVWDAVTG-SRTYSFEG-HGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSA-NG  541 (1092)
Q Consensus       468 ~vwd~~~~-~~~~~~~~-~~~~v~~~~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~~~~s~-dg  541 (1092)
                      ++..-.-+ +.+..+.- .-..++.+.... +....+|+.+..+.+ +++.+.. +........+  .....++... .+
T Consensus       406 ~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~-e~veev~~~gf~~~~~TL~~~~l~~  483 (1158)
T 3ei3_A          406 RIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNG-EEVEETELMGFVDDQQTFFCGNVAH  483 (1158)
T ss_dssp             EEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEET-TEEEEECCTTCCSSSCEEEEEEETT
T ss_pred             EEEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeC-CcccccccccccCCCCcEEEEEcCC
Confidence            88742211 11122210 113344443221 123457777776666 4554422 1222221111  1111111111 12


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--EEeCC
Q 001362          542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG  619 (1092)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~  619 (1092)
                      ..++=...     ..|++.+...+..+..+....  ...|...+.+.  .+++.++ ++.+.++.+..++...  .....
T Consensus       484 ~~ivQVt~-----~~Irli~~~~~~~~~~w~~p~--~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~  553 (1158)
T 3ei3_A          484 QQLIQITS-----ASVRLVSQEPKALVSEWKEPQ--AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEME  553 (1158)
T ss_dssp             TEEEEEES-----SCEEEEESSSCCEEEEECCTT--CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECS
T ss_pred             CeEEEEec-----CEEEEEECCCCeEEEEEECCC--CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCC
Confidence            23333332     227777766555555554332  23566666543  4666665 6778888877654332  22222


Q ss_pred             CCCCCCceEEEccC------CCEEEEEeC-CCeEEEEECCCCceeeeccccc-CceeeeeecCCCccccccccCCceeec
Q 001362          620 GGLPENPRICFNKN------GTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVN  691 (1092)
Q Consensus       620 ~~~~~v~~v~~s~~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~  691 (1092)
                         ..|.|+++.|.      +.++++|.. |++++|+++++.+.+....-.. ....++.+.               .+ 
T Consensus       554 ---~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~---------------~~-  614 (1158)
T 3ei3_A          554 ---HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMT---------------TF-  614 (1158)
T ss_dssp             ---SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEE---------------EE-
T ss_pred             ---CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEE---------------Ee-
Confidence               35888888763      479999997 9999999998765443221111 111222221               01 


Q ss_pred             CCCCCCCccceeeccccccceecccc--ccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcC
Q 001362          692 EDPKEDVKPEISVEAENKSEVEKPLF--ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT  769 (1092)
Q Consensus       692 ~~~s~d~~~l~s~~~d~~i~lw~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~  769 (1092)
                          ....++..|-.||.+..+.++.  +.........+    ...++.-..+...|..-+.+.++.-..+|.-+     
T Consensus       615 ----~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L----G~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-----  681 (1158)
T 3ei3_A          615 ----ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL----GTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-----  681 (1158)
T ss_dssp             ----TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC----CSSCCEEEEEESSSCEEEEEESSSCEEEEESS-----
T ss_pred             ----CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc----CCCceEEEEEeeCCceeEEEECCCCEEEEEcC-----
Confidence                1124455666666654444332  11111111111    11233333333333322222223222222211     


Q ss_pred             cCcccccccCCccccCCCCCceeeecCCCCCCCCCee-EEEEecC--CCEEEEEeCCeEEEEEcCCcee--eEEecCCCC
Q 001362          770 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP-CFALSKN--DAYLFSASGGVISLYIVMTFKT--ILTIMPPSP  844 (1092)
Q Consensus       770 ~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~-~~~~s~d--g~~l~~~sdg~i~iwd~~~~~~--~~~~~~~~~  844 (1092)
                                        +. +....+    ....+. ...|+..  ..-++..+++.++|..+.+...  ++++. -..
T Consensus       682 ------------------~~-l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~  737 (1158)
T 3ei3_A          682 ------------------HK-LVFSNV----NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP-LYE  737 (1158)
T ss_dssp             ------------------SS-EEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE-CSS
T ss_pred             ------------------Cc-eEEecc----ChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEe-CCC
Confidence                              00 111111    111222 2234332  2345555566688877654322  22222 234


Q ss_pred             CeEEEEEcCCCCCEEEEEeCC-------------------------------------------------CcEEEEEcCC
Q 001362          845 TATSLAFNPHDNNVIAIGMDD-------------------------------------------------STILIYNARS  875 (1092)
Q Consensus       845 ~i~~l~~s~~d~~~lasg~~d-------------------------------------------------g~v~iwd~~~  875 (1092)
                      .+..++++| ..+.++++..+                                                 +.|++.|-.+
T Consensus       738 Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t  816 (1158)
T 3ei3_A          738 SPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHT  816 (1158)
T ss_dssp             EEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTT
T ss_pred             CceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCC
Confidence            667788887 55544443311                                                 2467777777


Q ss_pred             ceeeEeecc-ccCCeEEEE---EcCC-CCEEEEEe----------CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001362          876 SEVISKLEG-HSKRVTGLV---FSDA-LNILVSSG----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET  940 (1092)
Q Consensus       876 ~~~~~~l~~-h~~~V~~l~---~spd-g~~l~s~s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  940 (1092)
                      .+.+..+.- ....+.+++   |..+ ..+++.|.          ..|.|.++++..++..   .+...+-    .+.+.
T Consensus       817 ~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~---lv~~~~v----~g~v~  889 (1158)
T 3ei3_A          817 FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ---TVAEKEV----KGAVY  889 (1158)
T ss_dssp             CCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE---EEEEEEE----SSCEE
T ss_pred             CeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEE---EEEEEEc----CCcCE
Confidence            766554432 222344444   4333 46788775          3478999999854322   2221111    13566


Q ss_pred             EEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc--CCCceEEeecc
Q 001362          941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA--SNLEVQCRILS 1018 (1092)
Q Consensus       941 ~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~--~~~~~~~~~~~ 1018 (1092)
                      +++-- +| +|+++-..+|++|++...+.++. ...+-..|..+.....|.+++.|..-.+|.+...  ..+++.-..  
T Consensus       890 al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~-~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a--  964 (1158)
T 3ei3_A          890 SMVEF-NG-KLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA--  964 (1158)
T ss_dssp             EEEEE-TT-EEEEEETTEEEEEEECTTSCEEE-EEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE--
T ss_pred             EEeee-CC-EEEEEcCCEEEEEECCCCceEEE-EeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE--
Confidence            66533 23 77777789999999986654431 1111112333333345778888887777776554  333332111  


Q ss_pred             ccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001362         1019 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus      1019 ~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
                      ..+.       +.+..++.+-  |...++.+..+|.|.+...+..
T Consensus       965 ~D~~-------~~~vta~~~l--d~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A          965 RDFN-------PNWMSAVEIL--DDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp             ECCS-------CBCEEEEEEE--ETTEEEEEETTSEEEEEEECTT
T ss_pred             eecc-------cccEEEEEEE--ccCcEEEEcCCCcEEEEecCCC
Confidence            1222       2334455554  2368899999999999988653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.83  E-value=2.1e-06  Score=102.94  Aligned_cols=168  Identities=12%  Similarity=0.156  Sum_probs=114.6

Q ss_pred             EEEEcCCCCCEEEEEeCCCc-------------------EEEEEcCCceeeEeecc--cc-------CCeEEEEEcCCCC
Q 001362          848 SLAFNPHDNNVIAIGMDDST-------------------ILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN  899 (1092)
Q Consensus       848 ~l~~s~~d~~~lasg~~dg~-------------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spdg~  899 (1092)
                      .++++| +..+++.++.++.                   |..+|..+|+.+..++.  |.       .+.....+..+|+
T Consensus       234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            478888 6778888887763                   99999999999887764  32       2333333334675


Q ss_pred             ---EEEEEeCCCcEEEEEcCCCceeeeeeeec---------CCCCc--------C------CC-----CCceEEEEecCC
Q 001362          900 ---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT---------PDGVM--------T------LA-----PSETHIQFHKDQ  948 (1092)
Q Consensus       900 ---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---------~~~~~--------~------~~-----~~v~~l~~s~dg  948 (1092)
                         .++.++.+|.+.++|..+++.........         ..+..        .      ..     ..-..++++|+.
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~  392 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT  392 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence               68889999999999999988652211100         00000        0      00     001237888987


Q ss_pred             CEEEEE-------------------------------------eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC
Q 001362          949 TRFLLV-------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR  991 (1092)
Q Consensus       949 ~~la~~-------------------------------------~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~  991 (1092)
                      .++.+.                                     .++.|..||..+|+.+-+...  ..++....+...|.
T Consensus       393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg  470 (668)
T 1kv9_A          393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGN  470 (668)
T ss_dssp             TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTT
T ss_pred             CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCC
Confidence            776651                                     126799999999998765432  23344445566788


Q ss_pred             EEEEEECCCcEEEEEcCCCceEEeecc
Q 001362          992 MVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       992 ~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      ++++++.||.++.||..+|+.+.++..
T Consensus       471 ~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          471 LVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCcccchhhhhhcChhheEecC
Confidence            999999999999999999999988874

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.80  E-value=5.5e-06  Score=96.68  Aligned_cols=167  Identities=14%  Similarity=0.176  Sum_probs=106.8

Q ss_pred             EEEEcCCCCCEEEEEeCC----------------CcEEEEEcCCceeeEeecc--cc--------CCeEEEEEc-CCC--
Q 001362          848 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DAL--  898 (1092)
Q Consensus       848 ~l~~s~~d~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-pdg--  898 (1092)
                      .+++.+ ...+++.++.+                +.|.-+|..+|+.+..++.  |.        .++. +... .+|  
T Consensus       245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~  322 (599)
T 1w6s_A          245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA  322 (599)
T ss_dssp             CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred             ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence            356667 55677777665                3899999999999877764  21        1222 2222 567  


Q ss_pred             -CEEEEEeCCCcEEEEEcCCCceeeeeeeec----------CCCCc----------CC-----------CCCceEEEEec
Q 001362          899 -NILVSSGGDAQIFVWDVDGWGIQTCRSLQT----------PDGVM----------TL-----------APSETHIQFHK  946 (1092)
Q Consensus       899 -~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~----------~~~~~----------~~-----------~~~v~~l~~s~  946 (1092)
                       +.++.++.+|.+.+.|..+++..-......          ..+..          ..           ...-..++++|
T Consensus       323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp  402 (599)
T 1w6s_A          323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP  402 (599)
T ss_dssp             EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred             EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence             567788999999999999987654322110          00000          00           00113567888


Q ss_pred             CCCEEEEE----------------------------------------eCCcEEEEEcCCceeeeeeccCCCCCEEEEEE
Q 001362          947 DQTRFLLV----------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATF  986 (1092)
Q Consensus       947 dg~~la~~----------------------------------------~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~f  986 (1092)
                      +..++.+.                                        ..+.|.-||+.+|+.+-+...+  .++..-.+
T Consensus       403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~  480 (599)
T 1w6s_A          403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM  480 (599)
T ss_dssp             TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred             CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcce
Confidence            77766541                                        2256888898888877654322  22222223


Q ss_pred             ecCCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001362          987 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       987 s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      ...|..++.++.||.++.||..+|+.+.++..
T Consensus       481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence            44667888899999999999999999988864

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.76  E-value=1.2e-06  Score=89.76  Aligned_cols=200  Identities=12%  Similarity=0.076  Sum_probs=138.4

Q ss_pred             CeeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee
Q 001362          804 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  879 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~  879 (1092)
                      ....++|++|+.++++.+   ++.|+++|+.+++.+..+.-.. .....+++.  ++++.++...++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            457899999876555544   3789999999999998875322 233456665  3455566667889999999999999


Q ss_pred             EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCc
Q 001362          880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH  958 (1092)
Q Consensus       880 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~  958 (1092)
                      .++..-...  ...+++||+.|+.+..++.|.++|..+.+......+.......   ..+..+.|. +|...+.. .++.
T Consensus       100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~---~~~nele~~-dg~lyvn~~~~~~  173 (266)
T 2iwa_A          100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV---IRLNELEYI-NGEVWANIWQTDC  173 (266)
T ss_dssp             EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc---ccceeEEEE-CCEEEEecCCCCe
Confidence            888632121  2446678888877777889999999987654432222211111   135678888 77555544 5689


Q ss_pred             EEEEEcCCceeeeeeccC-C-----------CCCEEEEEEecCCCEEE-EEECCCcEEEEEcCCCc
Q 001362          959 LAIYEAEELTCLKQWFPI-S-----------SVPISQATFSCDCRMVF-TSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       959 i~lwd~~~~~~~~~~~~~-h-----------~~~v~~l~fs~dg~~l~-t~~~Dg~i~vwd~~~~~ 1011 (1092)
                      |.+.|..+++.+..+..+ -           ......++|+|+++.++ ++...+.+.+-++....
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            999999999988776432 0           13568999999987555 45567888888876643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.71  E-value=2.4e-05  Score=91.52  Aligned_cols=378  Identities=11%  Similarity=0.002  Sum_probs=203.9

Q ss_pred             EEEEEeC-CCcEEEEEC-CCCceeEEEecCCc-Ce----------EEEeecccCCccEEEEEecCCeEEEEEcCCCCceE
Q 001362          457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGA-PV----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV  523 (1092)
Q Consensus       457 ~l~s~~~-d~~i~vwd~-~~~~~~~~~~~~~~-~v----------~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  523 (1092)
                      .++.++. ++.|..+|. ++|+.+.++..... .+          ..+++    .+..++.++.|+.+..+|..+++.+.
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            3555666 889999999 89999887753321 00          11122    23578888899999999999998887


Q ss_pred             EecCCCC----ceEE-EEEccCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeecccc-------------------
Q 001362          524 DYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ-------------------  577 (1092)
Q Consensus       524 ~~~~~~~----~i~~-~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-------------------  577 (1092)
                      .......    .+.+ ..+ .++ .++++....  ..++.|+.+|..+|+.+-.+......                   
T Consensus       140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence            6554321    1111 111 144 455443211  11567999999999998776543200                   


Q ss_pred             ---------------CC-ceEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEeCCCCC---
Q 001362          578 ---------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGL---  622 (1092)
Q Consensus       578 ---------------~~-~v~~~~~~p~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~---  622 (1092)
                                     .. ....+++.++...++.++.+                +.|..+|..+|+.+...+...+.   
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d  297 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence                           00 00135667777777776642                35999999999999888654211   


Q ss_pred             ----CCCceEEEccCCC---EEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCC
Q 001362          623 ----PENPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK  695 (1092)
Q Consensus       623 ----~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s  695 (1092)
                          ....-+....+|+   .++.++.+|.+.++|..+++.+.........-....+.+                     
T Consensus       298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~---------------------  356 (571)
T 2ad6_A          298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL---------------------  356 (571)
T ss_dssp             CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT---------------------
T ss_pred             cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc---------------------
Confidence                1111122224674   677888899999999999987765432210000000000                     


Q ss_pred             CCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccc
Q 001362          696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT  775 (1092)
Q Consensus       696 ~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~  775 (1092)
                      ..++.+......         . .+.....+..|.......-..++++|+...+++...+....++..+..         
T Consensus       357 ~~g~p~~~~~~~---------~-~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~---------  417 (571)
T 2ad6_A          357 KTGTPVRDPEFA---------T-RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP---------  417 (571)
T ss_dssp             TTCSEEECGGGC---------C-CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC---------
T ss_pred             cCCceecccccC---------C-CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc---------
Confidence            000000000000         0 000000001111001111134678999888888877644444332110         


Q ss_pred             cccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCC
Q 001362          776 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD  855 (1092)
Q Consensus       776 ~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d  855 (1092)
                               ...+. .         .-.....+..+|.+.  ....++.+..||..+++.+.++.... .+....+.. .
T Consensus       418 ---------~~~g~-~---------~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~  474 (571)
T 2ad6_A          418 ---------YRAGQ-F---------FVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-K  474 (571)
T ss_dssp             ---------CCTTS-C---------CCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-T
T ss_pred             ---------cccCC-c---------cccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE-C
Confidence                     00011 0         000011122233321  00124789999999998887765322 222222232 3


Q ss_pred             CCEEEEEeCCCcEEEEEcCCceeeEeeccccCC-eEEEEEcCCCCEEEE
Q 001362          856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS  903 (1092)
Q Consensus       856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s  903 (1092)
                      +.++++++.||.|+.||..+|+.+.++...... -.-+.+..+|+.++.
T Consensus       475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence            457777999999999999999999888743221 122345567765553

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.69  E-value=4.1e-05  Score=89.60  Aligned_cols=379  Identities=12%  Similarity=0.075  Sum_probs=202.6

Q ss_pred             EEEEeCCCcEEEEECCCCceeEEEecCCcCe---------EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001362          458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPV---------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP  528 (1092)
Q Consensus       458 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  528 (1092)
                      ++.++.++.|..+|.++|+.+.++.......         ..+++    .+..++.++.|+.|..+|..+++.+......
T Consensus        71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            4445543449999999999998876443211         11122    2357888899999999999999988765443


Q ss_pred             CC----ceE-EEEEcc---CCC-EEEEEecCC--CCceeEEEEeCCCCeEEEEEeecccc--------------------
Q 001362          529 GL----GCT-RMAYSA---NGR-RLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ--------------------  577 (1092)
Q Consensus       529 ~~----~i~-~~~~s~---dg~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~--------------------  577 (1092)
                      ..    .+. ...+..   +|+ .++++....  ..++.|+.+|..+|+.+-........                    
T Consensus       147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w  226 (582)
T 1flg_A          147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW  226 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred             CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence            21    111 111112   234 455543211  12578999999999987665431100                    


Q ss_pred             ------------------CCceEEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCceEEE
Q 001362          578 ------------------HNSVSVVHFDTAKDQILAAGD--------------------D----HVIKIWDMNKVQLLTT  615 (1092)
Q Consensus       578 ------------------~~~v~~~~~~p~~~~l~~~s~--------------------d----g~i~iwd~~~~~~~~~  615 (1092)
                                        ...-..+++.|+...++.+..                    |    +.|..+|..+|+.+..
T Consensus       227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~  306 (582)
T 1flg_A          227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF  306 (582)
T ss_dssp             CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred             CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence                              000013567777788887663                    2    5899999999999988


Q ss_pred             EeCCCCC----CCCc-eEEEc---cCCC---EEEEEeCCCeEEEEECCCCceeeecccccC--ceeeeeecCCCcccccc
Q 001362          616 IDAGGGL----PENP-RICFN---KNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAG  682 (1092)
Q Consensus       616 ~~~~~~~----~~v~-~v~~s---~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~  682 (1092)
                      ++...+.    ..+. -+.+.   .+|+   .++.++.+|.++++|..+++.+........  ....+...         
T Consensus       307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~---------  377 (582)
T 1flg_A          307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLK---------  377 (582)
T ss_dssp             EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTT---------
T ss_pred             EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccccc---------
Confidence            8653221    0111 12222   4674   788899999999999999988766543221  11111000         


Q ss_pred             ccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEe
Q 001362          683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR  762 (1092)
Q Consensus       683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~  762 (1092)
                        .+.........|..  +. . .+            +.....+..|.......-..++++|+...+++...+-...++.
T Consensus       378 --~g~p~~~~~~~~~~--~~-~-~~------------~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~  439 (582)
T 1flg_A          378 --TGRPVEREGQRPPL--PE-P-GQ------------KHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWT  439 (582)
T ss_dssp             --TCCEEECTTCSCCC--CC-T-TC------------SSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEE
T ss_pred             --CCCEeEccccCCcc--cc-c-cc------------cCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeec
Confidence              00000000000000  00 0 00            0000001111111111122467888877777766553333332


Q ss_pred             ecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCC
Q 001362          763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP  842 (1092)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~  842 (1092)
                      .+..                  ...|            ....-..+...|++.    ..+|.|..||+.+++.+.+....
T Consensus       440 ~~~~------------------~~~g------------~~~~g~~~~~~p~~~----~~~G~l~A~D~~tG~~~W~~~~~  485 (582)
T 1flg_A          440 EEVS------------------YTKG------------SAYLGMGFRIKRMYD----DHVGSLRAMDPVSGKVVWEHKEH  485 (582)
T ss_dssp             CCCC------------------CCTT------------SCCCCEEEEEEESCS----SCSEEEEEECTTTCCEEEEEEES
T ss_pred             cccc------------------ccCC------------CceeccceeecCCCC----CCcceEEEEECCCCCEEEEecCC
Confidence            1110                  0011            111111122223310    12578999999999988766533


Q ss_pred             CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCe-EEEEEcCCCCEEEE
Q 001362          843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILVS  903 (1092)
Q Consensus       843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~~l~s  903 (1092)
                      .. +..-.+.. .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..+|+..+.
T Consensus       486 ~~-~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          486 LP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             SC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CC-CcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence            22 21111112 34578889999999999999999998887543322 12566678764443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.69  E-value=3e-06  Score=86.81  Aligned_cols=217  Identities=9%  Similarity=-0.009  Sum_probs=144.0

Q ss_pred             ceeeEEecCCCC--CeEEEEEcCCCCCEEEEEeC--CCcEEEEEcCCceeeEeecccc-CCeEEEEEcCCCCEE-EEEeC
Q 001362          833 FKTILTIMPPSP--TATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNIL-VSSGG  906 (1092)
Q Consensus       833 ~~~~~~~~~~~~--~i~~l~~s~~d~~~lasg~~--dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l-~s~s~  906 (1092)
                      .+.+.++. |..  ....++|++ ++.++++.+.  ++.|.++|+.+++.+..+.-.. .-...+++.  ++.| ++.-.
T Consensus         9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A            9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred             ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence            34555664 443  368999999 6655554443  5799999999999988865211 122345554  4444 44556


Q ss_pred             CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCC----CCCE
Q 001362          907 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS----SVPI  981 (1092)
Q Consensus       907 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~~~~h----~~~v  981 (1092)
                      ++.+.++|..+.+....  +... ..       ....+++||+.+.++ .+++|.++|..+.+.+..+..+.    -..+
T Consensus        85 ~~~v~viD~~t~~v~~~--i~~g-~~-------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~  154 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKN--FTHQ-MK-------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL  154 (266)
T ss_dssp             CSEEEEEETTTTEEEEE--EECC-SS-------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             CCEEEEEECCCCcEEEE--EECC-CC-------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence            88999999998664432  2221 01       124477788877774 45789999999988877765432    1246


Q ss_pred             EEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCC---CCccCcccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001362          982 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP---TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus       982 ~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w 1058 (1092)
                      ..+.|. ||+..+....++.|.+-|..+++...++......+.   ..+....-+..++++|+....++++...+.|.+-
T Consensus       155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i  233 (266)
T 2iwa_A          155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI  233 (266)
T ss_dssp             EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence            788888 786555555678999999999999999875321110   0011123446789999655678888889999999


Q ss_pred             eCCCCC
Q 001362         1059 EPNEPG 1064 (1092)
Q Consensus      1059 ~~~~~~ 1064 (1092)
                      ++.+..
T Consensus       234 ~l~~~~  239 (266)
T 2iwa_A          234 KLHLVR  239 (266)
T ss_dssp             EEEECC
T ss_pred             EEeccc
Confidence            986543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.66  E-value=1.2e-05  Score=93.99  Aligned_cols=167  Identities=9%  Similarity=0.067  Sum_probs=107.5

Q ss_pred             EEEEcCCCCCEEEEEeCC----------------CcEEEEEcCCceeeEeecc--cc--------CCeEEEEEcCCCC--
Q 001362          848 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFSDALN--  899 (1092)
Q Consensus       848 ~l~~s~~d~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~spdg~--  899 (1092)
                      .+++.+ +...++.+..+                +.|..+|..+|+.+..++.  |.        .++. +....+|+  
T Consensus       239 ~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~  316 (571)
T 2ad6_A          239 WYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMT  316 (571)
T ss_dssp             CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEE
T ss_pred             eEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEE
Confidence            356777 45566666532                3599999999999877753  21        2221 22234774  


Q ss_pred             -EEEEEeCCCcEEEEEcCCCceeeeeeeec-C---------CCCc-------------------CCC--CCceEEEEecC
Q 001362          900 -ILVSSGGDAQIFVWDVDGWGIQTCRSLQT-P---------DGVM-------------------TLA--PSETHIQFHKD  947 (1092)
Q Consensus       900 -~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-~---------~~~~-------------------~~~--~~v~~l~~s~d  947 (1092)
                       .++.++.+|.+.+.|..+++..-...+.. .         .+..                   ...  ..-..++|+|+
T Consensus       317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  396 (571)
T 2ad6_A          317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE  396 (571)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence             57788899999999999987544322111 0         0000                   000  00135788998


Q ss_pred             CCEEEEE-e-------------------------------------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecC
Q 001362          948 QTRFLLV-H-------------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCD  989 (1092)
Q Consensus       948 g~~la~~-~-------------------------------------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~d  989 (1092)
                      ..++.+. .                                     ++.|..||..+++.+.+...+  ..+.+..+...
T Consensus       397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~  474 (571)
T 2ad6_A          397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTK  474 (571)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEET
T ss_pred             CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEEC
Confidence            8877763 2                                     367999999999887664322  23333334445


Q ss_pred             CCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001362          990 CRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       990 g~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      +..+++++.||.|+.||..+|+.+.++..
T Consensus       475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          475 GGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence            66788899999999999999999988874

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.66  E-value=2.8e-05  Score=90.68  Aligned_cols=383  Identities=11%  Similarity=0.038  Sum_probs=202.1

Q ss_pred             EEEEEeC-CCcEEEEEC-CCCceeEEEecCCcC-----------eEEEeecccC--CccEEEEEecCCeEEEEEcCCCCc
Q 001362          457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-----------VYSLCPHAKE--NIHFIFSISVDGKIKAWLYDSLGA  521 (1092)
Q Consensus       457 ~l~s~~~-d~~i~vwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~  521 (1092)
                      .++.++. ++.|.-+|. ++|+.+.++......           ...+++.+..  ...+++.++.|+.+..+|..+++.
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~  143 (599)
T 1w6s_A           64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET  143 (599)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence            3666666 889999999 899999877543211           0122331111  112388888999999999999998


Q ss_pred             eEEecCCCC----ceEE-EEEccCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeeccccC----------------
Q 001362          522 RVDYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQH----------------  578 (1092)
Q Consensus       522 ~~~~~~~~~----~i~~-~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~----------------  578 (1092)
                      +........    .+.+ ..+ .++ .+++++...  ..++.|+.+|..+|+.+-.+.......                
T Consensus       144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g  221 (599)
T 1w6s_A          144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG  221 (599)
T ss_dssp             EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence            876544321    1111 111 244 444443211  125689999999999887765432000                


Q ss_pred             ------------------Cce-EEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEeCCCCCC
Q 001362          579 ------------------NSV-SVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP  623 (1092)
Q Consensus       579 ------------------~~v-~~~~~~p~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~~  623 (1092)
                                        ..+ ...++.++...++.+..+                +.|..+|..+|+.+..++...+..
T Consensus       222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~  301 (599)
T 1w6s_A          222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE  301 (599)
T ss_dssp             CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred             ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence                              000 134566777888887765                379999999999998887543211


Q ss_pred             ----CCce-EEEc---cCC---CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecC
Q 001362          624 ----ENPR-ICFN---KNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  692 (1092)
Q Consensus       624 ----~v~~-v~~s---~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1092)
                          .... +.+.   .+|   ..++.++.+|.++++|..+++.+.........-+.-.+.         ...+...+..
T Consensus       302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~---------~~~g~p~~~~  372 (599)
T 1w6s_A          302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD---------LKTGQPVRDP  372 (599)
T ss_dssp             SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC---------TTTCCEEECG
T ss_pred             ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc---------cCCCceeecc
Confidence                0111 2222   467   567778899999999999998776543211000000000         0000000000


Q ss_pred             CCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCc
Q 001362          693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST  772 (1092)
Q Consensus       693 ~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~  772 (1092)
                      ...+                      .+.....+..|.......-..++++|+...+++...+....++..+..      
T Consensus       373 ~~~~----------------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~------  424 (599)
T 1w6s_A          373 EYGT----------------------RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP------  424 (599)
T ss_dssp             GGCC----------------------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC------
T ss_pred             ccCC----------------------CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc------
Confidence            0000                      000000111111111122235688999888877776633322211100      


Q ss_pred             ccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEc
Q 001362          773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN  852 (1092)
Q Consensus       773 ~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s  852 (1092)
                                  ...+..          .-..-..+..+|.+........|.+..||+.+++.+.+.......... .+.
T Consensus       425 ------------~~~g~~----------~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-~~~  481 (599)
T 1w6s_A          425 ------------YKAGQF----------FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG-TMA  481 (599)
T ss_dssp             ------------CCTTSC----------CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB-CEE
T ss_pred             ------------ccCCcc----------eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc-ceE
Confidence                        000110          000000011122110000002477899999999887766422111111 122


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCe-EEEEEcCCCCEEE
Q 001362          853 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILV  902 (1092)
Q Consensus       853 ~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~~l~  902 (1092)
                      . .+.+++.++.||.++.||.++|+.+.+++-..+.+ .-+.+..||+..+
T Consensus       482 t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv  531 (599)
T 1w6s_A          482 T-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (599)
T ss_dssp             E-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             e-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence            2 35577789999999999999999998886433221 2245556776433

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.64  E-value=5.4e-05  Score=88.60  Aligned_cols=167  Identities=14%  Similarity=0.159  Sum_probs=106.7

Q ss_pred             EEEEcCCCCCEEEEEeC--------------------C----CcEEEEEcCCceeeEeecc--cc--------CCeEEEE
Q 001362          848 SLAFNPHDNNVIAIGMD--------------------D----STILIYNARSSEVISKLEG--HS--------KRVTGLV  893 (1092)
Q Consensus       848 ~l~~s~~d~~~lasg~~--------------------d----g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~  893 (1092)
                      .++++| +..+++.+..                    |    +.|.-+|..+|+.+..++.  |.        .++. +.
T Consensus       250 ~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~  327 (582)
T 1flg_A          250 SASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FD  327 (582)
T ss_dssp             CCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EE
T ss_pred             CceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Ee
Confidence            467777 5567766653                    2    5899999999999887753  32        1221 12


Q ss_pred             Ec-CCCC---EEEEEeCCCcEEEEEcCCCceeeeeeeec------------------CCCCc--------C---------
Q 001362          894 FS-DALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT------------------PDGVM--------T---------  934 (1092)
Q Consensus       894 ~s-pdg~---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~------------------~~~~~--------~---------  934 (1092)
                      .. .+|+   .++.++.+|.++++|..+++..-......                  .....        .         
T Consensus       328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~  407 (582)
T 1flg_A          328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP  407 (582)
T ss_dssp             EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred             eecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence            21 4674   78889999999999999987553222110                  00000        0         


Q ss_pred             CC--CCceEEEEecCCCEEEE-Ee---------------------------------CCcEEEEEcCCceeeeeeccCCC
Q 001362          935 LA--PSETHIQFHKDQTRFLL-VH---------------------------------ETHLAIYEAEELTCLKQWFPISS  978 (1092)
Q Consensus       935 ~~--~~v~~l~~s~dg~~la~-~~---------------------------------d~~i~lwd~~~~~~~~~~~~~h~  978 (1092)
                      ..  ..-..++++|+..++.+ ..                                 ++.|.-||+.+|+.+-+...+  
T Consensus       408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~--  485 (582)
T 1flg_A          408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH--  485 (582)
T ss_dssp             TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--
T ss_pred             CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--
Confidence            00  00124677877665554 21                                 467999999999887654322  


Q ss_pred             CCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001362          979 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       979 ~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      .++..-.....|.++++++.||.++.||..+|+.+.++..
T Consensus       486 ~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          486 LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence            2222222333566888899999999999999999998874

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.58  E-value=6.3e-06  Score=83.08  Aligned_cols=186  Identities=13%  Similarity=0.065  Sum_probs=129.9

Q ss_pred             eeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcCe-EEEeecccCCccEEEEEecCCeEEEEEcCCCC
Q 001362          444 VNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG  520 (1092)
Q Consensus       444 v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  520 (1092)
                      ...+.|+ ++.  ++++.+.+|  .|+++|+++|+.+.++....... ..+++  .+ +.+.+..-.++.+.++|..+.+
T Consensus        45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g-~~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WK-DKIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTTCC
T ss_pred             cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eC-CEEEEEEeeCCEEEEEECccCc
Confidence            4778898 664  667777666  89999999999998886433221 22443  22 2445555568999999999999


Q ss_pred             ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc--cCCceEEEEEcCCCCEEEEEeC
Q 001362          521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGD  598 (1092)
Q Consensus       521 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~~~s~  598 (1092)
                      .+..+......   ..+++|++.|+...    +...|.++|..+.+.+..+.....  ....++.+.+. +|...+..-.
T Consensus       119 ~~~ti~~~~eG---~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~  190 (262)
T 3nol_A          119 QVRSFNYDGEG---WGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ  190 (262)
T ss_dssp             EEEEEECSSCC---CCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             EEEEEECCCCc---eEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence            88877654422   34457888887763    256799999999999888765320  11234556776 6654444447


Q ss_pred             CCcEEEEECCCCceEEEEeCCCC----------CCCCceEEEccCCCEEEEEeCC
Q 001362          599 DHVIKIWDMNKVQLLTTIDAGGG----------LPENPRICFNKNGTLLAVIANE  643 (1092)
Q Consensus       599 dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~l~~~~~d  643 (1092)
                      ++.|.+.|..+++.+..+...+-          ....+.+||+|+++.|.+.+..
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            88999999999999999876421          1234789999998888877763

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.54  E-value=0.0058  Score=74.79  Aligned_cols=572  Identities=13%  Similarity=0.080  Sum_probs=299.1

Q ss_pred             CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001362          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      ...|.++.-..+|...+  |+.+| +..||-.+   ...+..     .          -......|.++....+| .|-.
T Consensus        21 ~n~V~~I~qD~~G~lWi--gT~~G-L~ryDG~~---~~~~~~-----~----------~~~~~~~i~~i~~d~~g-~lWi   78 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIWI--GSNKG-LFSYDGYS---TQQHFT-----Y----------GENNNTRIYCGVIIDNT-YLYM   78 (758)
T ss_dssp             CCCEEEEEECTTSCEEE--EESSC-EEEECSSC---EEECSC-----T----------TSTTSSCEEEEEEETTT-EEEE
T ss_pred             cceEEEEEECCCCCEEE--EECCC-ccccCCCc---eEEEEc-----c----------CCCCCceEEEEEEcCCC-cEEE
Confidence            34799999999997444  44555 56666321   111000     0          00123568888877766 5556


Q ss_pred             EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe-----cCCcCe
Q 001362          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----GHGAPV  488 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~~~~v  488 (1092)
                      |+.+| +..||..++.....   .......|.++.. .+|.   |..++.+ -+..+|..+++.. .+.     .....|
T Consensus        79 gT~~G-l~~yd~~~~~f~~~---~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i  148 (758)
T 3ott_A           79 GTDNG-ILVYNYRADRYEQP---ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI  148 (758)
T ss_dssp             EETTE-EEEEETTTTEECCC---SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred             EeCCC-eEEEeCCCCEEECc---ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence            66666 78999887532110   0112234776654 4554   4444544 6888998776543 331     112456


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecC----CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001362          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      .++..  +.++.+.+ ++.+| +..++..+...... ...    ....|.++....++..|..+..     +-+..+|..
T Consensus       149 ~~i~~--d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~  219 (758)
T 3ott_A          149 YSIIR--TKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPS  219 (758)
T ss_dssp             EEEEE--CTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETT
T ss_pred             EEEEE--cCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCC
Confidence            66655  33444444 55544 66677655432211 111    1224778888777775555542     128889988


Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC-----CCCCCceEEEccCCCEEE
Q 001362          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~  638 (1092)
                      +++........   ...|.++....++... .|+.+ -+.+++..++..........     ....|.++....+|. |.
T Consensus       220 ~~~~~~~~~l~---~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW  293 (758)
T 3ott_A          220 TGQIKQTEAFH---NNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IW  293 (758)
T ss_dssp             TTEEEEEEEEE---EEEEEEEEECTTCCEE-EEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EE
T ss_pred             CCeEEeccCCC---CCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EE
Confidence            77653322111   2468888887777654 45544 58888887765433221110     112356666666665 44


Q ss_pred             EEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccc
Q 001362          639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA  718 (1092)
Q Consensus       639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~  718 (1092)
                      +|+..| +.++....  .....                                                     .... 
T Consensus       294 iGT~~G-l~~~~~~~--~~~~~-----------------------------------------------------~~~~-  316 (758)
T 3ott_A          294 LGTDYG-ISLSRYNS--ALQFI-----------------------------------------------------PISQ-  316 (758)
T ss_dssp             EEESSS-EEEECCCC---CEEE-----------------------------------------------------EHHH-
T ss_pred             EEeCCc-ccccccCC--ceeEE-----------------------------------------------------eccc-
Confidence            455555 43332111  00000                                                     0000 


Q ss_pred             cCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCC
Q 001362          719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD  798 (1092)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~  798 (1092)
                               .........|.++....+|...+. +.+| +..++......         .....+......    ..+  
T Consensus       317 ---------~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~---------~~~~~~~~~~~~----~~l--  370 (758)
T 3ott_A          317 ---------ITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGER---------HDAIWYRMGDKT----YPL--  370 (758)
T ss_dssp             ---------HSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSC---------CCCEEECTTCSS----SCC--
T ss_pred             ---------CCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeeccccccc---------ceeEEeccCCcC----CCC--
Confidence                     000002235777777777875554 3455 33333221100         000111100000    001  


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEe--cC----CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 001362          799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--MP----PSPTATSLAFNPHDNNVIAIGMDDSTILIYN  872 (1092)
Q Consensus       799 ~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd  872 (1092)
                        ....|.++.-.++|++.+.. ++-+..||..+++...-.  ..    ....|.++...+ ++. |-.|+..+-+.++|
T Consensus       371 --~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~  445 (758)
T 3ott_A          371 --SHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVD  445 (758)
T ss_dssp             --SCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEE
T ss_pred             --CCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEc
Confidence              23568888888888876644 667999998877654321  11    224578888876 554 55577766688888


Q ss_pred             cCCc-----eee---Eeec---c-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001362          873 ARSS-----EVI---SKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET  940 (1092)
Q Consensus       873 ~~~~-----~~~---~~l~---~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  940 (1092)
                      ..+.     ...   ..+.   + ....|.++...++|++.+.++..+-|..+|..+++...   +.. ... .....+.
T Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~---~~~-~~~-~~~~~~~  520 (758)
T 3ott_A          446 KHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK---LFA-DEL-TGEKSPN  520 (758)
T ss_dssp             HHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE---ECT-TTS-CGGGCEE
T ss_pred             cccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE---ecC-CCc-CCCcccc
Confidence            6531     111   1111   1 12358999999999877644444558889988755332   111 110 0012477


Q ss_pred             EEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccC-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccc
Q 001362          941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019 (1092)
Q Consensus       941 ~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~ 1019 (1092)
                      ++....+|.+.+.+. +.+..|+..++....-...+ ....|.++... +|. |..++..| +..+|..+.+... +.  
T Consensus       521 ~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~~~~-~~--  593 (758)
T 3ott_A          521 YLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMDARQ-QN--  593 (758)
T ss_dssp             EEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCCEEE-C---
T ss_pred             eEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCceeEE-ec--
Confidence            888888898877654 56888887665432210111 13567888764 665 44455555 7788888776542 11  


Q ss_pred             cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001362         1020 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus      1020 ~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
                        ++..    .+. -++...+  ...|..|+.+|-+ .++...
T Consensus       594 --~~~~----~~~-~~~~~~~--~G~l~fG~~~Gl~-~f~p~~  626 (758)
T 3ott_A          594 --MTNK----RFT-SLLFDPK--EDCVYLGGADGFG-ISHSNL  626 (758)
T ss_dssp             ---CCC----CCS-EEEEETT--TTEEEEECBSEEE-EEEC--
T ss_pred             --CCCC----cee-eeEEECC--CCcEEEecCCceE-EEChhh
Confidence              1111    122 1222233  3678888888754 455543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.52  E-value=6e-06  Score=83.25  Aligned_cols=184  Identities=12%  Similarity=0.109  Sum_probs=125.6

Q ss_pred             eeEEEEecCCCEEEEEe-CC--eEEEEEcCCceeeEEecCCCCC-eEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeE
Q 001362          805 VPCFALSKNDAYLFSAS-GG--VISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  880 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~s-dg--~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~  880 (1092)
                      ...+.|+ ++.++.+.+ +|  .|+++|+.+++.+..+.-.... .-.+++.  ++++.+....++.+.+||..+.+.+.
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEE
Confidence            4678898 666665555 44  7999999999998887644322 2335554  34555555668999999999999999


Q ss_pred             eeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcE
Q 001362          881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL  959 (1092)
Q Consensus       881 ~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i  959 (1092)
                      ++..-.   ....+++|++.|+.+..++.|.++|..+.+......+.. .+...  ..+..+.|. +|+..+.. .++.|
T Consensus       122 ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~~~I  194 (262)
T 3nol_A          122 SFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQTNKI  194 (262)
T ss_dssp             EEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTSSEE
T ss_pred             EEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccCCeE
Confidence            887422   223444678877776667889999999876554333321 11110  134557776 77665554 56789


Q ss_pred             EEEEcCCceeeeeeccC---------C--CCCEEEEEEecCCCEEEEEEC
Q 001362          960 AIYEAEELTCLKQWFPI---------S--SVPISQATFSCDCRMVFTSFV  998 (1092)
Q Consensus       960 ~lwd~~~~~~~~~~~~~---------h--~~~v~~l~fs~dg~~l~t~~~  998 (1092)
                      .+.|..+|+.+..+-.+         +  ..-...++|+|+++.|++.+.
T Consensus       195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            99999999988775432         0  235688999999888887764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.52  E-value=1.3e-05  Score=97.66  Aligned_cols=248  Identities=9%  Similarity=-0.010  Sum_probs=133.7

Q ss_pred             CceEEeec-CCCceEEEEEcCCC----cEEEEecCCC-CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001362          336 SPMSMDFH-PVQHTLLLVGTNVG----DTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1092)
Q Consensus       336 ~V~~v~~s-pdg~~llasg~~d~----~v~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  409 (1092)
                      .+...+|| |||++++.+.+.+|    +|+++|+.+| +.+.. .                 +.   .....++|+|||+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~  233 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT  233 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence            67889999 99996555544443    4999999998 63321 0                 11   1134688999999


Q ss_pred             EEEEEeCC-----CEEEEEEccCCCcccceEEEc-ccccceeEEEEecCCCcEEEEEEe-CCCcEEEEECCCCc-ee--E
Q 001362          410 LLGVAYSK-----HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGS-RT--Y  479 (1092)
Q Consensus       410 ~las~~~d-----~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~-~d~~i~vwd~~~~~-~~--~  479 (1092)
                      .|+....+     ..|.++++.++...... .+. ........+.|||||+++++.+.. ....|.++|+.++. ..  .
T Consensus       234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~  312 (751)
T 2xe4_A          234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE  312 (751)
T ss_dssp             EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred             EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence            99888664     36888888776422111 222 222345678999999964333322 23468888988762 22  3


Q ss_pred             EE-ecCCcCeEEEeecccCCccEEEEEecC--C--eEEEEEcCCCCceEE-ecCCCC--ceEEEEEccCCCEEEEEecCC
Q 001362          480 SF-EGHGAPVYSLCPHAKENIHFIFSISVD--G--KIKAWLYDSLGARVD-YDAPGL--GCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       480 ~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d--g--~i~vwd~~~~~~~~~-~~~~~~--~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      .+ ........++.|+  .++.+++....+  +  .|..+++.+...... +..+..  .+..+  ++++..|+.... .
T Consensus       313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~--~~~~~~lv~~~~-~  387 (751)
T 2xe4_A          313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESI--AVRSNYLVVAGR-R  387 (751)
T ss_dssp             ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEE--EECSSEEEEEEE-E
T ss_pred             EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEE--EEECCEEEEEEE-e
Confidence            33 2334444554432  133344444443  2  566666654222122 222222  33444  445666665543 2


Q ss_pred             CCceeEEEEeC-------CCCeEEEEEeeccccCCceEEEEE----cCCCCEE-EEEeCC---CcEEEEECCCCce
Q 001362          552 EGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHF----DTAKDQI-LAAGDD---HVIKIWDMNKVQL  612 (1092)
Q Consensus       552 ~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~----~p~~~~l-~~~s~d---g~i~iwd~~~~~~  612 (1092)
                      ++...|+++++       .+++....+....  ...+..+.+    ++++..+ ++.+..   ..++.+|+.+++.
T Consensus       388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~  461 (751)
T 2xe4_A          388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR  461 (751)
T ss_dssp             TTEEEEEEEECCTTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred             CCEEEEEEEecccccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence            34667888886       4443123332111  112233322    3455444 443322   4577788877764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.49  E-value=7.4e-05  Score=80.93  Aligned_cols=268  Identities=10%  Similarity=0.031  Sum_probs=149.2

Q ss_pred             ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeee--eeecccccceeeEeeecCCCCcEEEEEECC
Q 001362          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK--VWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      .+.+.-....+++|+++|+ ++.++..++.|..||..+++.... ...  .+....|...... ........+..+++.+
T Consensus        13 ~~~g~~~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~-~~~~~~~~p~gi~~~~   89 (322)
T 2fp8_A           13 LIEAPSYAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVDF-AYASPYWNKAFCENSTDA-EKRPLCGRTYDISYNL   89 (322)
T ss_dssp             EEECSSSCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEEE-EESCTTCCHHHHTTCCCG-GGHHHHCCEEEEEEET
T ss_pred             ecCCccCCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEEE-ecccccccccccccccch-hccccCCCCceEEEcC
Confidence            3444434678899999998 566777889999999877653321 000  0000000000000 0000113578899998


Q ss_pred             -CCCEEEEEeCCCEEEEEEccCCCcccceE-EEcc-cccceeEEEEec-CCCcEEEEEEeC-----------------CC
Q 001362          407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQL-EIDA-HVGNVNDLAFSA-PCKQISVITCGD-----------------DK  465 (1092)
Q Consensus       407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~-~~~~-h~~~v~~~~~s~-d~~~l~l~s~~~-----------------d~  465 (1092)
                       +|+ |.++...+.|..+|..++.. .... ...+ .......+++.+ +|.  +.++...                 ++
T Consensus        90 ~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g  165 (322)
T 2fp8_A           90 QNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTG  165 (322)
T ss_dssp             TTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred             CCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCc
Confidence             554 55554455588888776532 1111 1111 113467899999 887  5554322                 36


Q ss_pred             cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEE-EEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEccCCC
Q 001362          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGR  542 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~  542 (1092)
                      .|..||..+++....... ....+.++++  +++.+|+ +-+..+.|.++++....  ....+....+ ...+++.++|+
T Consensus       166 ~v~~~d~~~~~~~~~~~~-~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~  241 (322)
T 2fp8_A          166 RLIKYDPSTKETTLLLKE-LHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH  241 (322)
T ss_dssp             EEEEEETTTTEEEEEEEE-ESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC
T ss_pred             eEEEEeCCCCEEEEeccC-CccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC
Confidence            789999877764433222 2234567774  4666554 44667899999987532  1111111222 67899999998


Q ss_pred             EEEEEecCC------CCceeEEEEeCCCCeEEEEEeecccc-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001362          543 RLFSCGTSK------EGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  609 (1092)
Q Consensus       543 ~l~~~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~  609 (1092)
                      ..++.....      ...+.|..+|.. ++.+..+...... ...+..+++ .++..+++...++.|.++++..
T Consensus       242 l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          242 FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            766654210      013568889874 7777766643210 134556666 3444444444677888888753

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.47  E-value=4.4e-06  Score=84.07  Aligned_cols=184  Identities=9%  Similarity=0.077  Sum_probs=124.9

Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCC-CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe
Q 001362          804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK  881 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~  881 (1092)
                      -...+.|+. +.++.+.+ +|.|+++|+++++.+..+ -... ..-.+++.  ++++.+....++.+.+||..+.+.+.+
T Consensus        56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            346788873 44444444 588999999999988887 2222 22346665  456666667789999999999999998


Q ss_pred             eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEE
Q 001362          882 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA  960 (1092)
Q Consensus       882 l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~  960 (1092)
                      +..- ..-..++  +|++.|+.+..++.|.++|..+.+......+.......   ..+..+.|. +|++.+.. .++.|.
T Consensus       132 i~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v---~~lNeLe~~-dG~lyanvw~s~~I~  204 (268)
T 3nok_A          132 TRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV---ELINELECA-NGVIYANIWHSSDVL  204 (268)
T ss_dssp             EECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred             EeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc---ccccccEEe-CCEEEEEECCCCeEE
Confidence            8742 2223344  67888888777899999999987755533332211111   135667777 77655554 567899


Q ss_pred             EEEcCCceeeeeeccC------------CCCCEEEEEEecCCCEEEEEEC
Q 001362          961 IYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV  998 (1092)
Q Consensus       961 lwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~~~  998 (1092)
                      +.|..+|+.+..+-.+            -..-...++++|+++.|++.+.
T Consensus       205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            9999999987765322            1245688999998766665553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.47  E-value=3.7e-05  Score=83.30  Aligned_cols=240  Identities=10%  Similarity=-0.010  Sum_probs=146.5

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEc-----------------ccccceeEEEEec-CCCcEEE
Q 001362          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-----------------AHVGNVNDLAFSA-PCKQISV  458 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-----------------~h~~~v~~~~~s~-d~~~l~l  458 (1092)
                      .....++|.++|+++.++..++.|..|+..++.. .......                 .....+..+++.+ +++   |
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~---l   94 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ---L   94 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE---E
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc---E
Confidence            4566789999999888888889999999876532 1110000                 0123578899998 665   4


Q ss_pred             EEEeCCCcEEEEECCCCceeEEEec-----CCcCeEEEeecccC-CccEEEEEec-----------------CCeEEEEE
Q 001362          459 ITCGDDKTIKVWDAVTGSRTYSFEG-----HGAPVYSLCPHAKE-NIHFIFSISV-----------------DGKIKAWL  515 (1092)
Q Consensus       459 ~s~~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~~~~l~s~~~-----------------dg~i~vwd  515 (1092)
                      +.+...+.|..+|..+++. ..+..     .....+.+++  .+ +|.+.++...                 +|.|..+|
T Consensus        95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~--d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  171 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTV--DQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD  171 (322)
T ss_dssp             EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEE--CTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred             EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEE--ecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence            4444445588899776542 22221     1123566777  44 5566665432                 36677887


Q ss_pred             cCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCCEE
Q 001362          516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQI  593 (1092)
Q Consensus       516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l  593 (1092)
                      ..+........ .......++++++|+.|+.+..   ..+.|+.++.....  ....+....   + ...+++.++|+..
T Consensus       172 ~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~~G~l~  243 (322)
T 2fp8_A          172 PSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNADGHFW  243 (322)
T ss_dssp             TTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECTTSCEE
T ss_pred             CCCCEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECCCCCEE
Confidence            76554322211 1123456899999997776643   24569999887521  112222222   3 7789999999866


Q ss_pred             EEEeC----------CCcEEEEECCCCceEEEEeCCCC--CCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001362          594 LAAGD----------DHVIKIWDMNKVQLLTTIDAGGG--LPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       594 ~~~s~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      ++...          .+.|..+|. .++.+..+....+  ...+..+++ .+++++++...++.|..+++..
T Consensus       244 va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          244 VSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            66544          467888887 4777777765432  234566666 4566666555678899988764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.46  E-value=3.9e-05  Score=77.26  Aligned_cols=186  Identities=10%  Similarity=0.110  Sum_probs=128.3

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001362          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      ..-...+.|+ ++.+..+.+.+|.|+++|+++++.++..  +..   ........++++. +.+..-.++.+.+||.++.
T Consensus        54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl  126 (268)
T 3nok_A           54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPP  126 (268)
T ss_dssp             TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTT
T ss_pred             ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcC
Confidence            3445778887 4666677788889999999999987754  332   2333223445565 3444667899999999999


Q ss_pred             ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CC---ceEEEEEccCCCEEEEEecC
Q 001362          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GL---GCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~---~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      +.+.++..... -..++.    |++.|+.+..++.|.++|..+.+....+...  ..   .+..+.+. +|+ |++... 
T Consensus       127 ~~~~ti~~~~e-GwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw-  198 (268)
T 3nok_A          127 QRERTTRYSGE-GWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW-  198 (268)
T ss_dssp             EEEEEEECSSC-CCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET-
T ss_pred             cEEEEEeCCCc-eeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC-
Confidence            99999975332 234443    4567777777999999999988876655432  22   34556666 775 444432 


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeeccc----------cCCceEEEEEcCCCCEEEEEeC
Q 001362          551 KEGESFLVEWNESEGAIKRTYQGLQL----------QHNSVSVVHFDTAKDQILAAGD  598 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~p~~~~l~~~s~  598 (1092)
                        ....|.+.|+.+|+.+..+.....          .....+.++++|+++.|++.+.
T Consensus       199 --~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          199 --HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             --TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             --CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence              245799999999999988775311          1245789999999888877664

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.46  E-value=0.00048  Score=74.40  Aligned_cols=234  Identities=9%  Similarity=0.038  Sum_probs=133.1

Q ss_pred             CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEec---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001362          802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1092)
                      ...+.++.+.+ +..++++..+.|.. ....|+.-....   .+...+..+++.+ ++..++++ .+|.|.. ..+.|+.
T Consensus        79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred             CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCC
Confidence            44678899986 55666665664433 222233222222   2334577888876 66666655 4564432 2222332


Q ss_pred             e-EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCC
Q 001362          879 I-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET  957 (1092)
Q Consensus       879 ~-~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~  957 (1092)
                      = ....++...+..+++.+++.+++.+...+..+-+|-....   ...+....  .   ..+..+++++++++++++.++
T Consensus       154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~t---W~~~~~~~--~---~~~~~~~~~~~g~~~~~~~~G  225 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA---WEPHNRTT--S---RRLHNMGFTPDGRLWMIVNGG  225 (327)
T ss_dssp             EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSS---CEEEECCS--S---SCEEEEEECTTSCEEEEETTT
T ss_pred             CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCc---eeECCCCC--C---CccceeEECCCCCEEEEeCCc
Confidence            1 1223456678999999998888766444333333321111   11222211  1   257889999999988888888


Q ss_pred             cEEEEEcCCceeeeeeccC---CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccce
Q 001362          958 HLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus       958 ~i~lwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
                      .+++.+...|+.-.....+   +...+..+.+.+++..++++ .+|.| ++..+.|+.-..+......+.     .++  
T Consensus       226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-----~~~--  296 (327)
T 2xbg_A          226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-----NFY--  296 (327)
T ss_dssp             EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-----CCC--
T ss_pred             eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-----CeE--
Confidence            8877654435443332212   23468899999888877755 57776 566676755544431111111     244  


Q ss_pred             EEEECCCCCCEEEEEeCCCcEEEEe
Q 001362         1035 AIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus      1035 ~~~~~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
                      ++.|.+  +..+++++.+|.|.-++
T Consensus       297 ~v~~~~--~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          297 KILFFS--PDQGFILGQKGILLRYV  319 (327)
T ss_dssp             EEEEEE--TTEEEEECSTTEEEEEC
T ss_pred             EEEEEC--CCceEEEcCCceEEEEc
Confidence            455543  35677888899776655

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.45  E-value=1e-05  Score=97.33  Aligned_cols=277  Identities=10%  Similarity=0.040  Sum_probs=156.1

Q ss_pred             EEeecC-CCceEEEEEcCCC-----------cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001362          339 SMDFHP-VQHTLLLVGTNVG-----------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       339 ~v~~sp-dg~~llasg~~d~-----------~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      ++++.| +|+ +++.|+.+.           .+.+||..+++-....                .+...+.....++++.+
T Consensus       190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~~~  252 (656)
T 1k3i_A          190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISMDG  252 (656)
T ss_dssp             EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEECT
T ss_pred             eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc----------------ccCCCCCCccccccCCC
Confidence            567777 787 677776432           5788888877533210                01122333445678889


Q ss_pred             CCCEEEEEeC-CCEEEEEEccCCCcccceEEEcccccc-eeEEEEecCCCcEEEEEEe-CC-----CcEEEEECCCCcee
Q 001362          407 DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQISVITCG-DD-----KTIKVWDAVTGSRT  478 (1092)
Q Consensus       407 dg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~~~-v~~~~~s~d~~~l~l~s~~-~d-----~~i~vwd~~~~~~~  478 (1092)
                      +|+.+++|+. +..+.+||..+++-.. ...+  +..+ -.+++..++++  +++.|+ .+     ..+.+||..+++..
T Consensus       253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~--~~~R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          253 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDM--QVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCC--SSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             CCCEEEeCCCCCCceEEecCcCCceeE-CCCC--CccccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence            9999999984 4579999998764221 1111  1111 23456667888  777777 44     57999999887643


Q ss_pred             EEEecC-CcCeE----EEeecccCCccEEEEEecCC---------eEEEEEcCCCCceEEecCC---------CCceEEE
Q 001362          479 YSFEGH-GAPVY----SLCPHAKENIHFIFSISVDG---------KIKAWLYDSLGARVDYDAP---------GLGCTRM  535 (1092)
Q Consensus       479 ~~~~~~-~~~v~----~~~~~~~~~~~~l~s~~~dg---------~i~vwd~~~~~~~~~~~~~---------~~~i~~~  535 (1092)
                      .. ... ..+..    ...+  ..++..++.++.+|         .+..||..+..........         ...-.++
T Consensus       328 ~~-~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av  404 (656)
T 1k3i_A          328 SL-PNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV  404 (656)
T ss_dssp             EE-TTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred             eC-CCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence            32 100 00000    0011  12445556665554         4567877765533221111         1122344


Q ss_pred             EEc-cCCCEEEEEecCCC----Cce---eEEEEeCCCCeEEEEE--eeccccCCceEEEEEcCCCCEEEEEeCC------
Q 001362          536 AYS-ANGRRLFSCGTSKE----GES---FLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDD------  599 (1092)
Q Consensus       536 ~~s-~dg~~l~~~~~~~~----~~~---~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l~~~s~d------  599 (1092)
                      .+. .+++.++.|+.+..    ...   .+.+||..+.......  ....  ...-.+++..|+++.++.|+.+      
T Consensus       405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~~~~  482 (656)
T 1k3i_A          405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFE  482 (656)
T ss_dssp             EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred             eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCcCcC
Confidence            444 36777777764321    011   6888998877654433  1111  1223445667899999998754      


Q ss_pred             -----CcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001362          600 -----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       600 -----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                           ..+.+||..+.+....-.............+.|+|+.++.|+.
T Consensus       483 ~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          483 DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                 4689999988765432222211122234556789999999885

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.44  E-value=9.7e-05  Score=79.24  Aligned_cols=228  Identities=14%  Similarity=0.113  Sum_probs=138.2

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-CC-cEEEEECCC
Q 001362          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK-TIKVWDAVT  474 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~-~i~vwd~~~  474 (1092)
                      .....++|+++|+++++-..++.|..||..++.  ...  + ........+++.++|+  ++++... ++ .|..+|..+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~  104 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIH--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD  104 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEE--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEE--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence            456789999999977776678899999987532  211  1 2234688999999998  4554433 32 477778788


Q ss_pred             CceeEEEec-CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-e-------c--CCCCceEEEEEccCCCE
Q 001362          475 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-Y-------D--APGLGCTRMAYSANGRR  543 (1092)
Q Consensus       475 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~-------~--~~~~~i~~~~~s~dg~~  543 (1092)
                      ++....... .......++..  .++..+++...++.|.++|......... .       .  ..-.....+  ++|++.
T Consensus       105 g~~~~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~  180 (306)
T 2p4o_A          105 GTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF  180 (306)
T ss_dssp             SCEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred             CeEEEEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence            875433221 11223344432  2334455555688888888765321111 0       0  111133445  889988


Q ss_pred             EEEEecCCCCceeEEEEeCCC-CeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC
Q 001362          544 LFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  620 (1092)
                      |+.+..   ..+.|+.++... ++.  ...+.. .   .....+++.++|+.+++....+.|.+++.. ++.........
T Consensus       181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~-~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~  252 (306)
T 2p4o_A          181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVE-Q---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ  252 (306)
T ss_dssp             EEEEET---TTTEEEEEEBCTTSCBCCCEEEEE-S---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred             EEEEeC---CCCEEEEEEeCCCCCCCccEEEec-c---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence            877653   356799999864 332  112211 1   235668899999877776678899999975 65533222222


Q ss_pred             CCCCCceEEEc---cCCCEEEEEeCC
Q 001362          621 GLPENPRICFN---KNGTLLAVIANE  643 (1092)
Q Consensus       621 ~~~~v~~v~~s---~~~~~l~~~~~d  643 (1092)
                      ......+++|.   |+++.|++.+..
T Consensus       253 ~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          253 GVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ccCCceEEEEecccCCCCEEEEECCC
Confidence            23456889998   888877776654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.42  E-value=0.00073  Score=73.62  Aligned_cols=249  Identities=11%  Similarity=-0.012  Sum_probs=154.8

Q ss_pred             CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001362          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      .+..+|.+..+++. ++++  ....|+..++........                   +. ....+..++|++.+..|..
T Consensus        33 ~d~~~C~~~~~~~~-ll~~--~~~~I~~i~~~g~~~~~~-------------------~~-~~~~~~~l~~d~~~~~ly~   89 (349)
T 3v64_C           33 PDRRSCKALGPEPV-LLFA--NRIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFW   89 (349)
T ss_dssp             TTSSCEEESSSCCE-EEEE--CBSCEEEECTTSCCEEEE-------------------EC-SCSCEEEEEEETTTTEEEE
T ss_pred             CCCCcccccccCce-eEee--cccceEEEeCCCCeeEEe-------------------ec-CCCceEEEEEeccccEEEE
Confidence            34667888777553 4444  235688888776543321                   22 3345889999987666665


Q ss_pred             E-eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEe
Q 001362          414 A-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC  492 (1092)
Q Consensus       414 ~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  492 (1092)
                      . ...+.|..+++.++....   .+.........+++.+.+.. ++++-...+.|.+.+++.......+.........++
T Consensus        90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia  165 (349)
T 3v64_C           90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA  165 (349)
T ss_dssp             EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred             EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence            5 456789999988754221   12222334578999986664 456666678999999775543333333345567888


Q ss_pred             ecccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001362          493 PHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1092)
                      +.+. ++.++++-... +.|...+++...........-.....++++|++..|+.+-.   +.+.|..+|.........+
T Consensus       166 vdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~  241 (349)
T 3v64_C          166 LHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI  241 (349)
T ss_dssp             EETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred             EecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence            8653 34455555555 78888888765444433333446789999998888877643   2567999998654333333


Q ss_pred             eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001362          572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       572 ~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                      ....   .....+++. .+..+++-...+.|..++..+|+....+.
T Consensus       242 ~~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          242 SQGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             CSSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             eCCC---CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            2222   456677773 34444445567788888876776666554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.41  E-value=0.00013  Score=78.20  Aligned_cols=231  Identities=12%  Similarity=0.084  Sum_probs=136.9

Q ss_pred             CCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC-C-cEEEEEcCCceee
Q 001362          803 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-S-TILIYNARSSEVI  879 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d-g-~v~iwd~~~~~~~  879 (1092)
                      .....++++++|+++++.. ++.|..||.... ....+. .......+++++ +++++++.... + .|..++..+++..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE  108 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE
Confidence            4567899999999666654 688999998753 333332 335688999999 78766655433 2 4777787777653


Q ss_pred             Eeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee---ee--cCCCCcCCCCCceEEEEecCCCEEEE
Q 001362          880 SKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ--TPDGVMTLAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       880 ~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~--~~~~~~~~~~~v~~l~~s~dg~~la~  953 (1092)
                      .... ........++..+++..+++-..++.|.++|..++.......   +.  ...+..   .....+  ++|++.|.+
T Consensus       109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv  183 (306)
T 2p4o_A          109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYV  183 (306)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEE
T ss_pred             EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEE
Confidence            3221 112223455666666556655568888888876542111000   00  011111   123455  899987776


Q ss_pred             E--eCCcEEEEEcCC-cee--eeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCcc
Q 001362          954 V--HETHLAIYEAEE-LTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1028 (1092)
Q Consensus       954 ~--~d~~i~lwd~~~-~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1028 (1092)
                      +  ..+.|..|++.. +..  ...+..  ......+++++||+++++....+.|.+++.. |+........  .+     
T Consensus       184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--~~-----  253 (306)
T 2p4o_A          184 SNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--QG-----  253 (306)
T ss_dssp             EETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--GT-----
T ss_pred             EeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--cc-----
Confidence            4  457899999874 332  111111  1345678999999987777777899999975 6553211100  11     


Q ss_pred             CcccceEEEEC---CCCCCEEEEEeCCC
Q 001362         1029 LHVYPHAIAAH---PLKPTQFAVGLTNG 1053 (1092)
Q Consensus      1029 ~~v~~~~~~~~---p~~~~~l~~~~~dg 1053 (1092)
                       .-.+.+++|.   | |+..|.+++..+
T Consensus       254 -~~~p~~~a~~g~~~-d~~~LyVt~~~~  279 (306)
T 2p4o_A          254 -VIGSTAVAFGQTEG-DCTAIYVVTNGG  279 (306)
T ss_dssp             -CTTEEEEEECCSTT-TTTEEEEEECTT
T ss_pred             -cCCceEEEEecccC-CCCEEEEECCCC
Confidence             1236678898   6 455565555443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.39  E-value=0.0002  Score=72.91  Aligned_cols=208  Identities=7%  Similarity=-0.012  Sum_probs=134.4

Q ss_pred             eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001362          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +.|.|-.+++..++|+|++..|.++...++.|...|.. |+.+....                 +.+ ....-.|++.++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~   80 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGD   80 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECST
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCC
Confidence            46777777999999999887788888888999999998 77665422                 222 256788999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCcccceEEEc------ccccceeEEEEecCCCcEEEEEEeCCC-cEEEEEC-CCCceeE
Q 001362          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDK-TIKVWDA-VTGSRTY  479 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~------~h~~~v~~~~~s~d~~~l~l~s~~~d~-~i~vwd~-~~~~~~~  479 (1092)
                      +.++++.-.++.+.++++.....+.......      ........++|+|+++.+++ +...+. .|..|+- ..+..+.
T Consensus        81 g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~~~~~l~  159 (255)
T 3qqz_A           81 NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLLSSNELH  159 (255)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTTCSSCCE
T ss_pred             CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEcccccCCcee
Confidence            9877776567889999987654322111221      12345689999999985333 333333 4555541 1112222


Q ss_pred             EEe-------cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CceEEEEEccCCCE
Q 001362          480 SFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSANGRR  543 (1092)
Q Consensus       480 ~~~-------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s~dg~~  543 (1092)
                      .+.       .+...+.+++++|. .+++++.....+.+.++|.... .+..+....         .....++|.++|+.
T Consensus       160 i~~~~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l  237 (255)
T 3qqz_A          160 ISKDKALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI  237 (255)
T ss_dssp             EEECHHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCE
T ss_pred             eecchhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCE
Confidence            221       12345678888875 4578888888888999987644 333332221         25688999999985


Q ss_pred             EEEEecCCCCceeEEEEeC
Q 001362          544 LFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~  562 (1092)
                      .++ +.    .+.++.+..
T Consensus       238 yIv-sE----~n~~y~f~~  251 (255)
T 3qqz_A          238 YIV-SE----PNRFYRFTP  251 (255)
T ss_dssp             EEE-ET----TTEEEEEEC
T ss_pred             EEE-cC----CceEEEEEe
Confidence            555 33    335666654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.37  E-value=0.00015  Score=72.53  Aligned_cols=188  Identities=13%  Similarity=0.123  Sum_probs=125.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCC--CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001362          395 PGVSVNRVVWSPDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~  472 (1092)
                      ...-...+.|++ +.+..+.+.+  ..|+.+|+.+|+.++.. .+..+   ........++.. +.+..-.++.+.++|.
T Consensus        19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~~---~fgeGi~~~~~~-ly~ltw~~~~v~v~D~   92 (243)
T 3mbr_X           19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-EVPPP---YFGAGIVAWRDR-LIQLTWRNHEGFVYDL   92 (243)
T ss_dssp             TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCTT---CCEEEEEEETTE-EEEEESSSSEEEEEET
T ss_pred             CccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCCC---cceeEEEEeCCE-EEEEEeeCCEEEEEEC
Confidence            345677899986 5556666654  48999999999876643 22222   222333334554 4445567899999999


Q ss_pred             CCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-----CceEEEEEccCCCEEEEE
Q 001362          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-----LGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----~~i~~~~~s~dg~~l~~~  547 (1092)
                      ++.+.+.++...... ..++.    ++..|+.+..++.|.++|..+.+....+....     ..+..+.+. +|+ +++.
T Consensus        93 ~tl~~~~ti~~~~~G-wglt~----dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyan  165 (243)
T 3mbr_X           93 ATLTPRARFRYPGEG-WALTS----DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLAN  165 (243)
T ss_dssp             TTTEEEEEEECSSCC-CEEEE----CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEE
T ss_pred             CcCcEEEEEeCCCCc-eEEee----CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-EEEE
Confidence            999999999754332 34443    44566666678999999999888766554322     234455554 665 4443


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccc----------cCCceEEEEEcCCCCEEEEEeC
Q 001362          548 GTSKEGESFLVEWNESEGAIKRTYQGLQL----------QHNSVSVVHFDTAKDQILAAGD  598 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~p~~~~l~~~s~  598 (1092)
                      ...   ...|.+.|+.+|+.+..+.....          .....+.++++|+++.|++.+.
T Consensus       166 vw~---s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          166 VWL---TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             ETT---TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             ECC---CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            321   44699999999999988874321          1245789999999888888774

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.36  E-value=6.7e-05  Score=90.10  Aligned_cols=121  Identities=12%  Similarity=0.185  Sum_probs=76.4

Q ss_pred             EEEEcc-CCCEEEEEecCCC-------CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEE
Q 001362          534 RMAYSA-NGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKI  604 (1092)
Q Consensus       534 ~~~~s~-dg~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~i  604 (1092)
                      ..++.+ +++.++.++.+.+       ....+.+||+.+++..........+.....++++.+++..++.|+ .+..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456677 8888888775432       123689999988765432222111112334567788999888887 4568999


Q ss_pred             EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe-CC-----CeEEEEECCCCc
Q 001362          605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE-----NRIKILETPESN  655 (1092)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d-----g~i~iw~~~~~~  655 (1092)
                      ||..+.+....-..+.. ..-..++..+++++++.|+ .+     ..+.+||..+.+
T Consensus       270 yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            99988765544332221 1123566667899999988 34     457778776653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.36  E-value=7e-05  Score=74.86  Aligned_cols=187  Identities=10%  Similarity=0.037  Sum_probs=125.8

Q ss_pred             CCCeeEEEEecCCCEEEEEe-C--CeEEEEEcCCceeeEEecCCCCC-eEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce
Q 001362          802 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  877 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~s-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  877 (1092)
                      ..-...+.|++ +.++.+.+ +  ..|+.+|+.+++.+....-.... --.+++.  ++++......++.+.+||..+.+
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence            34456889986 45555544 2  47999999999999887644332 2345554  45566666778999999999999


Q ss_pred             eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eC
Q 001362          878 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE  956 (1092)
Q Consensus       878 ~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d  956 (1092)
                      .+.++..-. .-..+  ++|++.|+.+..++.|.++|..+.+......+.......   ..+..+.+. +|+..+.. .+
T Consensus        97 ~~~ti~~~~-~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~---~~lNeLe~~-~G~lyanvw~s  169 (243)
T 3mbr_X           97 PRARFRYPG-EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL---DNLNELEWV-NGELLANVWLT  169 (243)
T ss_dssp             EEEEEECSS-CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTT
T ss_pred             EEEEEeCCC-CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc---ccceeeEEe-CCEEEEEECCC
Confidence            999887432 22344  457777777677889999999987655433332211111   134556655 67655554 56


Q ss_pred             CcEEEEEcCCceeeeeeccC------------CCCCEEEEEEecCCCEEEEEEC
Q 001362          957 THLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV  998 (1092)
Q Consensus       957 ~~i~lwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~~~  998 (1092)
                      +.|.+.|..+|+.+..+-.+            -..-...++++|+++.|++.+.
T Consensus       170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            78999999999988765422            1235688999998887777664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.34  E-value=0.0006  Score=75.48  Aligned_cols=249  Identities=11%  Similarity=-0.008  Sum_probs=155.4

Q ss_pred             CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      +.-.|.+..+.+ +++++  ....|+..++.++.....                   . .....+..++|.+.+..|...
T Consensus        77 d~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~~-------------------~-~~~~~~~gl~~d~~~~~ly~~  133 (386)
T 3v65_B           77 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------L-NNLENAIALDFHHRRELVFWS  133 (386)
T ss_dssp             TSSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEEE-------------------E-CSCSCEEEEEEETTTTEEEEE
T ss_pred             CCCeECCccccc-eeEee--cCccceeeccCCCcEEEE-------------------e-cCCCccEEEEEecCCCeEEEE
Confidence            345677777755 34444  236788888876654321                   1 233468899999866666655


Q ss_pred             -eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEee
Q 001362          415 -YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  493 (1092)
Q Consensus       415 -~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~  493 (1092)
                       ...+.|..+++.++....   .+.........+++.+.+.. ++++-...+.|.+.+++.......+.........+++
T Consensus       134 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giav  209 (386)
T 3v65_B          134 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL  209 (386)
T ss_dssp             ETTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEE
T ss_pred             eCCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEE
Confidence             456789999988754211   12222234567899986664 4556666778999987755433334333455678888


Q ss_pred             cccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001362          494 HAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  572 (1092)
Q Consensus       494 ~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~  572 (1092)
                      .+. ++.++++-... +.|...+++...........-.....++++|++..|+.+-.   ..+.|..+|.........+.
T Consensus       210 dp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~  285 (386)
T 3v65_B          210 HPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS  285 (386)
T ss_dssp             ETT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEEC
T ss_pred             EcC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEE
Confidence            653 33445554444 77888888765554444444446789999998888877643   25679999986543333332


Q ss_pred             eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001362          573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       573 ~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  618 (1092)
                      ...   .....+++. .+..+++-...+.|..++..+|+....+..
T Consensus       286 ~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          286 QGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN  327 (386)
T ss_dssp             SSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             CCC---CCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence            222   456777773 344445555678888888777777666653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.33  E-value=0.0013  Score=70.63  Aligned_cols=238  Identities=10%  Similarity=-0.039  Sum_probs=145.0

Q ss_pred             EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC---CceeEE-EecCC
Q 001362          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTYS-FEGHG  485 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---~~~~~~-~~~~~  485 (1092)
                      +|+.+.. ..|+..|+.+++...   .+ ........++|.+++.. ++++-...+.|..+++.+   +..... +....
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~   76 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI   76 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECC-CeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence            4445444 348888988765332   22 23445789999987664 555666678999999876   222222 32222


Q ss_pred             cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001362          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      .....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+...  ..+.|+..++...
T Consensus        77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG~  153 (316)
T 1ijq_A           77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV  153 (316)
T ss_dssp             SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred             CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCCC
Confidence            34567777432 34556666778899999987654444443344567899999977777665431  1357888887543


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001362          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                       ....+....  ......+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus       154 -~~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~  229 (316)
T 1ijq_A          154 -DIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (316)
T ss_dssp             -CEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             -CeEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence             333332211  25678999999887777665 5678999998754433333322222234577775 456666666678


Q ss_pred             eEEEEECCCCceeeec
Q 001362          645 RIKILETPESNSVDAA  660 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~  660 (1092)
                      .|..++..+++....+
T Consensus       230 ~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          230 AIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEEETTTCCCCEEE
T ss_pred             eEEEEeCCCCcceEEE
Confidence            8999887766554443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.32  E-value=0.018  Score=70.46  Aligned_cols=527  Identities=11%  Similarity=0.057  Sum_probs=272.2

Q ss_pred             CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..|.++....+|..  -.|+.+ -+..+|..+++....                   .......|.++.. .+| .|..+
T Consensus        63 ~~i~~i~~d~~g~l--WigT~~-Gl~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWig  118 (758)
T 3ott_A           63 TRIYCGVIIDNTYL--YMGTDN-GILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWLG  118 (758)
T ss_dssp             SCEEEEEEETTTEE--EEEETT-EEEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEEE
T ss_pred             ceEEEEEEcCCCcE--EEEeCC-CeEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEEE
Confidence            46888888888863  334444 478999877532110                   0112235777765 345 55566


Q ss_pred             eCCCEEEEEEccCCCcccceEEEc-----ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC-----
Q 001362          415 YSKHIVQLYAYHGGSDARQQLEID-----AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-----  484 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~-----  484 (1092)
                      +.+| +..+|..+++..    .+.     .....|.++....+|.  +.+ |+.+ -+..+|..+++.. .+...     
T Consensus       119 t~~G-l~~~~~~~~~~~----~~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~-~~~~~~~~~~  188 (758)
T 3ott_A          119 ALNG-LYTYQLQSRKLT----SFDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFE-GIPLPVHSSQ  188 (758)
T ss_dssp             ETTE-EEEEETTTCCEE----EECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEE-EECCCCCTTC
T ss_pred             cCCc-ceeEeCCCCeEE----EeccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceE-EecCCCcccc
Confidence            6664 888898765421    121     1124588888877777  333 4444 4778887776543 22111     


Q ss_pred             -CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001362          485 -GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       485 -~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                       ...|.++..  +.++..|..|+. +-+..+|..+.............|.++....+|...+.. .    . -+.+++..
T Consensus       189 ~~~~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~----~-Gl~~~~~~  259 (758)
T 3ott_A          189 SNLFVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D----N-GLYVYHND  259 (758)
T ss_dssp             SSCCEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T----T-EEEEECCT
T ss_pred             ccceeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C----C-ceeEEecC
Confidence             123666655  334444555554 456777766543322111123357788888788766653 2    1 28888887


Q ss_pred             CCeEEEEEee----ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe-----CCCCCCCCceEEEccCC
Q 001362          564 EGAIKRTYQG----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-----AGGGLPENPRICFNKNG  634 (1092)
Q Consensus       564 ~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~v~~s~~~  634 (1092)
                      ++........    .......|.++....++. |-.|+..| +.++.... . .....     .......|.++.-..+|
T Consensus       260 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~-~-~~~~~~~~~~~~~~~~~v~~i~~D~~g  335 (758)
T 3ott_A          260 TTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS-A-LQFIPISQITGTGDGNQFYSLFRDSKG  335 (758)
T ss_dssp             TSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTC
T ss_pred             CCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC-c-eeEEecccCCCCCCCceEEEEEEcCCC
Confidence            7654322211    112235688888887775 45555556 55443322 1 11111     00111246667666666


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceec
Q 001362          635 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK  714 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~  714 (1092)
                      .+- +|+.+| +..++..++....                                                   ++.+.
T Consensus       336 ~lW-iGt~~G-l~~~~~~~~~~~~---------------------------------------------------~~~~~  362 (758)
T 3ott_A          336 FYW-FGGANG-LIRFTDPAGERHD---------------------------------------------------AIWYR  362 (758)
T ss_dssp             CEE-EEETTE-EEEESCTTSSCCC---------------------------------------------------CEEEC
T ss_pred             CEE-EeeCCc-ceeecccccccce---------------------------------------------------eEEec
Confidence            644 445544 5555443321000                                                   00000


Q ss_pred             cccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeee
Q 001362          715 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVN  794 (1092)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~  794 (1092)
                      ...  .        +.......|.++....+|...+.+ . +-+..|+......            ..+.        ..
T Consensus       363 ~~~--~--------~~~l~~~~v~~i~~d~~g~lWigt-~-~GL~~~~~~~~~~------------~~~~--------~~  410 (758)
T 3ott_A          363 MGD--K--------TYPLSHNRIRHIYEDKEQQLWIAT-D-GSINRYDYATRQF------------IHYN--------IV  410 (758)
T ss_dssp             TTC--S--------SSCCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEE------------EEEE--------EE
T ss_pred             cCC--c--------CCCCCCCceEEEEECCCCCEEEEe-C-CcHhhcCcCCCcE------------EEee--------cC
Confidence            000  0        000023457777777778755543 3 4455555432211            0000        00


Q ss_pred             cCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCc-----eee---EEec---C-CCCCeEEEEEcCCCCCEEEEE
Q 001362          795 DTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTF-----KTI---LTIM---P-PSPTATSLAFNPHDNNVIAIG  862 (1092)
Q Consensus       795 ~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~-----~~~---~~~~---~-~~~~i~~l~~s~~d~~~lasg  862 (1092)
                      ..........|.++...++|.+.+...++-+.++|..+.     ...   ..+.   + ....|.++...+ ++.+.+.+
T Consensus       411 ~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~  489 (758)
T 3ott_A          411 DNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLL  489 (758)
T ss_dssp             CCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEE
T ss_pred             CCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEc
Confidence            000000234578888888887666554567888886531     111   1111   1 223588999988 77766534


Q ss_pred             eCCCcEEEEEcCCceeeEeecc---ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCc
Q 001362          863 MDDSTILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE  939 (1092)
Q Consensus       863 ~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  939 (1092)
                      +..+-+..+|..+++.......   ....+.++....+|.+.+. +..| |..++..++....   .. ..+..  ...|
T Consensus       490 ~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~---~~-~~gl~--~~~i  561 (758)
T 3ott_A          490 YNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQS---IS-FGSFS--NNEI  561 (758)
T ss_dssp             TTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCB---CC-CCC-----CCE
T ss_pred             cCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEE---ec-ccCCC--ccce
Confidence            4445588899887764432211   1346788888888877764 4555 8888877654222   11 11111  1357


Q ss_pred             eEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEe-cCCCEEEEEECCCcEEEEEcC
Q 001362          940 THIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       940 ~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
                      .++... +|.+.+++ ++.+..+|..+.+...--.  ....+....+. +||. |..|+.+|- ..++..
T Consensus       562 ~~i~~~-~g~lWi~t-~~Gl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~G~-l~fG~~~Gl-~~f~p~  625 (758)
T 3ott_A          562 LSMTCV-KNSIWVST-TNGLWIIDRKTMDARQQNM--TNKRFTSLLFDPKEDC-VYLGGADGF-GISHSN  625 (758)
T ss_dssp             EEEEEE-TTEEEEEE-SSCEEEEETTTCCEEEC----CCCCCSEEEEETTTTE-EEEECBSEE-EEEEC-
T ss_pred             EEEEEC-CCCEEEEC-CCCeEEEcCCCceeEEecC--CCCceeeeEEECCCCc-EEEecCCce-EEEChh
Confidence            777764 66655544 5568888987765432111  12223334444 4664 555777774 445544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.30  E-value=0.0014  Score=71.46  Aligned_cols=248  Identities=11%  Similarity=-0.026  Sum_probs=153.2

Q ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001362          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  477 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~  477 (1092)
                      ..+|.+..++ .+|+.+.. ..|+..++.+....    .+......+..++|.+.+.. ++++-...+.|..+++..+..
T Consensus        35 ~~~C~~~~~~-~~ll~~~~-~~I~~i~~~g~~~~----~~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~  107 (349)
T 3v64_C           35 RRSCKALGPE-PVLLFANR-IDIRQVLPHRSEYT----LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNV  107 (349)
T ss_dssp             SSCEEESSSC-CEEEEECB-SCEEEECTTSCCEE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSC
T ss_pred             CCcccccccC-ceeEeecc-cceEEEeCCCCeeE----EeecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCCc
Confidence            4456666663 34554433 34777787664321    12223345789999987664 455556678899999887654


Q ss_pred             eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001362          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                      ...+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+......  ...|
T Consensus       108 ~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~I  184 (349)
T 3v64_C          108 EEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPRI  184 (349)
T ss_dssp             EEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCEE
T ss_pred             eEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCEE
Confidence            4433333334566777543 345666667778999999886655544444445678999999777777654311  3678


Q ss_pred             EEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCE
Q 001362          558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL  636 (1092)
Q Consensus       558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~  636 (1092)
                      +..+...... ..+....  ......++++|++..|+.+. ..+.|..+++........+...  ......+++ .++.+
T Consensus       185 ~r~~~dG~~~-~~~~~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~l  258 (349)
T 3v64_C          185 EASSMDGSGR-RIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSL  258 (349)
T ss_dssp             EEEETTSCSC-EESCCSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEE
T ss_pred             EEEeCCCCCc-EEEEECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEE
Confidence            8888764332 2222111  24578999998877776654 5678999998754443333322  233467777 44556


Q ss_pred             EEEEeCCCeEEEEECCCCceeeecc
Q 001362          637 LAVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       637 l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                      +++-...+.|..++..+++....+.
T Consensus       259 y~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          259 YWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEecCCCCeEEEEEccCCCccEEec
Confidence            6666667888888866665554443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.29  E-value=0.00082  Score=74.40  Aligned_cols=246  Identities=11%  Similarity=-0.038  Sum_probs=153.2

Q ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001362          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      .|.+..+ ..+|+.+.. ..|+..++.++....    +.........++|.+.+.. ++++-...+.|..+++..+....
T Consensus        80 ~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~~  152 (386)
T 3v65_B           80 SCKALGP-EPVLLFANR-IDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEE  152 (386)
T ss_dssp             CEEECSS-CCEEEEECB-SCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEEE
T ss_pred             eECCccc-cceeEeecC-ccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcEE
Confidence            3455555 345554433 458888887654322    2223345789999987664 45566677899999987765444


Q ss_pred             EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001362          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                      .+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.....  ....|+.
T Consensus       153 ~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~r  229 (386)
T 3v65_B          153 VVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIEA  229 (386)
T ss_dssp             EECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEEE
T ss_pred             EEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEEE
Confidence            33323334456676543 34566666677889888887655444444444567899999988777766431  1367888


Q ss_pred             EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001362          560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  638 (1092)
                      ++.............   ......++++|++..|+.+. ..+.|..+++........+...  ......+++ .++.+++
T Consensus       230 ~~~dG~~~~~~~~~~---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~  303 (386)
T 3v65_B          230 SSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYW  303 (386)
T ss_dssp             EETTSCSCEEEECSS---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEE
T ss_pred             EeCCCCCcEEEEECC---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEE
Confidence            887654333222221   24578999998877776654 5678999998754443333322  233567777 4456666


Q ss_pred             EEeCCCeEEEEECCCCceeeecc
Q 001362          639 VIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       639 ~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                      +-...+.|..++..+++....+.
T Consensus       304 td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          304 TDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EETTTTEEEEEETTTCCSCEEEE
T ss_pred             eeCCCCeEEEEECCCCcceEEEc
Confidence            66677888888866665555544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.27  E-value=0.00082  Score=68.32  Aligned_cols=217  Identities=12%  Similarity=0.121  Sum_probs=133.9

Q ss_pred             EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001362          838 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD  916 (1092)
Q Consensus       838 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~  916 (1092)
                      .+.+-...+..++++|+++.++++...++.|...|.. ++.+..+.- -......+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4555556899999999555666678888999999998 887777642 22568889999999877776677889999987


Q ss_pred             CCce-eeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCC---ceeeeee------ccCCCCCEEEEE
Q 001362          917 GWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE---LTCLKQW------FPISSVPISQAT  985 (1092)
Q Consensus       917 ~~~~-~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~---~~~~~~~------~~~h~~~v~~l~  985 (1092)
                      .... ..........+..........++++|+++.|.++ ......||.+..   ...+...      ...+-..+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            6542 1112222111111222457899999999777764 333445555531   1111111      011344678999


Q ss_pred             EecCC-CEEEEEECCCcEEEEEcCCCceEEeecccc-ccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001362          986 FSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTA-YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus       986 fs~dg-~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
                      |.|.. ++++.+.....+.++|.. |+.+..+.... ....  ....-.+-.++++| +++ |...++-+.++++.-
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l--~~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGL--SHNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGC--SSCCCSEEEEEECT-TCC-EEEEETTTEEEEEEC
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCc--ccccCCCCeeEECC-CCC-EEEEcCCceEEEEEe
Confidence            99855 455555566788899976 55665555332 1000  01112346689999 466 444477776666643

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.25  E-value=0.0019  Score=69.19  Aligned_cols=232  Identities=9%  Similarity=-0.062  Sum_probs=139.9

Q ss_pred             CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-eCCCEEEEEEccCC---Cccc
Q 001362          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGG---SDAR  432 (1092)
Q Consensus       357 ~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~---~~~~  432 (1092)
                      ..|+..|+.+++....                   + .....+..++|++++..|..+ ...+.|..+++.+.   ....
T Consensus        10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~   69 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD   69 (316)
T ss_dssp             SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred             CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence            6789999887764432                   1 234567899999977666655 45688999998762   2122


Q ss_pred             ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC-CeE
Q 001362          433 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKI  511 (1092)
Q Consensus       433 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i  511 (1092)
                      .  .+...-.....+++.+.+.. ++++-...+.|.+.|.+.......+.........+++.+. ++.++++.... +.|
T Consensus        70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I  145 (316)
T 1ijq_A           70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI  145 (316)
T ss_dssp             E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred             E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence            1  12222235678999876654 4556667889999997754433333333455678888543 33344444333 678


Q ss_pred             EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001362          512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD  591 (1092)
Q Consensus       512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  591 (1092)
                      ...+++...........-.....+++++++..|+.+-.   ..+.|..+|...... +.+............+++. .+.
T Consensus       146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~  220 (316)
T 1ijq_A          146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDK  220 (316)
T ss_dssp             EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTE
T ss_pred             EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCE
Confidence            88887654433333333456789999999888877643   256799999874333 3332211012345677774 344


Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEe
Q 001362          592 QILAAGDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       592 ~l~~~s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                      .+++-...+.|..++..+++.+..+.
T Consensus       221 ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          221 VFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCcceEEEe
Confidence            44455567788888887776555553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.23  E-value=0.00021  Score=87.04  Aligned_cols=201  Identities=6%  Similarity=-0.040  Sum_probs=114.0

Q ss_pred             CCCC-cEEEEEEC-CCCCEEEEEeC-C----CEEEEEEccCC-CcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-
Q 001362          394 DPGV-SVNRVVWS-PDGSLLGVAYS-K----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-  464 (1092)
Q Consensus       394 ~h~~-~V~~l~~s-pdg~~las~~~-d----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-  464 (1092)
                      +|.. .+...+|| |||++||.+.. +    .+|+++|+.+| +.+..  .+   ......++|+|||+.  |+....| 
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~---~~~~~~~~WspDg~~--l~y~~~d~  242 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KV---SGTNGEIVWGPDHTS--LFYVTKDE  242 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CE---EEECSCCEECSSTTE--EEEEEECT
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cc---cCceeeEEEecCCCE--EEEEEECC
Confidence            4443 78889999 99999997643 2    35999999998 64321  11   112457899999985  3333333 


Q ss_pred             ----CcEEEEECCCCce--eEEEec-CCcCeEEEeecccCCccEEEEEec---CCeEEEEEcCCCC-ce--EEe-cCCCC
Q 001362          465 ----KTIKVWDAVTGSR--TYSFEG-HGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLG-AR--VDY-DAPGL  530 (1092)
Q Consensus       465 ----~~i~vwd~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~-~~--~~~-~~~~~  530 (1092)
                          ..|.++++.++..  ...+.. .......+.+  ++||++|+..+.   ...|.++|+.+.. ..  ..+ .....
T Consensus       243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~  320 (751)
T 2xe4_A          243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG  320 (751)
T ss_dssp             TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred             CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence                3688889887753  223322 2233445566  557777776553   3357888887753 22  222 22333


Q ss_pred             ceEEEEEccCCCEEEEEecCC-CCceeEEEEeCCCCeEEEE-EeeccccCCceEEEEEcCCCCEE-EEEeCCCc--EEEE
Q 001362          531 GCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHV--IKIW  605 (1092)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l-~~~s~dg~--i~iw  605 (1092)
                      ...++.|+ +|..|+..+... .+...|+.+|..++..... +..+. ....+..+.+.  ++.+ ++...++.  |+++
T Consensus       321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR--SNYLVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred             ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence            44444443 366666555432 3466788899875322122 22222 01134455554  4444 45666775  4555


Q ss_pred             EC
Q 001362          606 DM  607 (1092)
Q Consensus       606 d~  607 (1092)
                      ++
T Consensus       397 dl  398 (751)
T 2xe4_A          397 MA  398 (751)
T ss_dssp             EC
T ss_pred             ec
Confidence            65

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.21  E-value=0.0024  Score=70.96  Aligned_cols=248  Identities=9%  Similarity=-0.036  Sum_probs=153.1

Q ss_pred             EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC----ceeEEEecCC
Q 001362          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG  485 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~  485 (1092)
                      +|+.+. ...|+..++.+.....    +......+..++|.+.+.. ++++-...+.|+.+++...    .....+....
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~  158 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  158 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred             eeEEec-cceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence            454443 4568888887654322    2234556889999987664 4555556788999998752    2223333234


Q ss_pred             cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001362          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      .....+++.+. ++.+.++-...+.|.+.+++.......+.........+++.|.+.+|+..-..  ....|+..++...
T Consensus       159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~  235 (400)
T 3p5b_L          159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV  235 (400)
T ss_dssp             SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred             CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence            45667777543 34566666778899999988665555554444567899999977777665421  1356888887654


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001362          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      .........   ......+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus       236 ~~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~  311 (400)
T 3p5b_L          236 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  311 (400)
T ss_dssp             SCEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred             ccEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence            433333222   25678999999888887765 5678999998765544444432222334566663 345566666678


Q ss_pred             eEEEEECCCCceeeecccccCceeee
Q 001362          645 RIKILETPESNSVDAAGVLSDNLRKL  670 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~v~~~  670 (1092)
                      .|..++..+++....+.........+
T Consensus       312 ~V~~~~~~~G~~~~~i~~~~~~p~~i  337 (400)
T 3p5b_L          312 AIFSANRLTGSDVNLLAENLLSPEDM  337 (400)
T ss_dssp             SEEEEESSSCCCCEEEECSCSCEEEE
T ss_pred             eEEEEEcCCCCceEEEecCCCCCceE
Confidence            88888877776655554333333333

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.13  E-value=0.00054  Score=76.96  Aligned_cols=246  Identities=12%  Similarity=0.045  Sum_probs=141.4

Q ss_pred             CeeEEEEec-CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeC-CC----cEEEEEcCCc
Q 001362          804 AVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS----TILIYNARSS  876 (1092)
Q Consensus       804 ~v~~~~~s~-dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg----~v~iwd~~~~  876 (1092)
                      ....++++| ++..|.++. .+.|+.+|..++...... ........++|++ ++++|+++.. ++    .+.+++. .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            456889998 455565555 478999999876654433 3456688999999 7885555554 22    3444443 33


Q ss_pred             eee--EeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001362          877 EVI--SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       877 ~~~--~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~  953 (1092)
                      ...  ..+. .......++++| +|.++++-..++.|..++..++....  .......     .....++|+|+|++|.+
T Consensus       215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv  286 (430)
T 3tc9_A          215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI  286 (430)
T ss_dssp             TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred             ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence            222  2222 123456789999 67777776678889999998754321  1222111     14678999999996665


Q ss_pred             E--eCCcEEEEEcCC--cee--eeeecc-----C---------CCCCEE-EEEEe--------cCCCEEEEEECCCcEEE
Q 001362          954 V--HETHLAIYEAEE--LTC--LKQWFP-----I---------SSVPIS-QATFS--------CDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus       954 ~--~d~~i~lwd~~~--~~~--~~~~~~-----~---------h~~~v~-~l~fs--------~dg~~l~t~~~Dg~i~v 1004 (1092)
                      +  ..+.|..++...  +..  +..+..     +         .-.... .++..        ++|.++++-...++|+.
T Consensus       287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~  366 (430)
T 3tc9_A          287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI  366 (430)
T ss_dssp             EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred             EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence            4  557888887653  221  111110     0         011223 45553        34666665556678998


Q ss_pred             EEcCCCceEEeecccc--ccC---C--CCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001362         1005 HEASNLEVQCRILSTA--YLR---P--TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1005 wd~~~~~~~~~~~~~~--~~~---~--~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      ++ .+|..........  ...   .  .....--.|..++++|+++.++++=...+.|+.+++.
T Consensus       367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            88 4565443322100  000   0  0000112577899998545566665566788887763

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.12  E-value=0.0052  Score=66.16  Aligned_cols=282  Identities=11%  Similarity=0.028  Sum_probs=147.7

Q ss_pred             CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..+.+|.|.+++. ++++|. +|.| +...+.|+.=......               .......+.+++|++ +..++ +
T Consensus        36 ~~~~~v~~~~~~~-~~~~G~-~g~i-~~s~DgG~tW~~~~~~---------------~~~~~~~~~~i~~~~-~~~~~-~   95 (327)
T 2xbg_A           36 ATILDMSFIDRHH-GWLVGV-NATL-METRDGGQTWEPRTLV---------------LDHSDYRFNSVSFQG-NEGWI-V   95 (327)
T ss_dssp             SCEEEEEESSSSC-EEEEET-TTEE-EEESSTTSSCEECCCC---------------CSCCCCEEEEEEEET-TEEEE-E
T ss_pred             CcEEEEEECCCCc-EEEEcC-CCeE-EEeCCCCCCCeECCCC---------------CCCCCccEEEEEecC-CeEEE-E
Confidence            4799999988877 566654 4544 3334444321110000               112345788999986 44444 4


Q ss_pred             eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE-EecCCcCeEEEee
Q 001362          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCP  493 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~  493 (1092)
                      +..+.|.. ....|+..........+.+.+..+.+.+++.  +++.+ .++.|.. ..+.|+.-.. ...+...+..+++
T Consensus        96 g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~  170 (327)
T 2xbg_A           96 GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNR  170 (327)
T ss_dssp             EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEE
T ss_pred             ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEE
Confidence            45664433 3334543332111112344577888887776  45544 4665433 2233433222 2344556788877


Q ss_pred             cccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee
Q 001362          494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG  573 (1092)
Q Consensus       494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~  573 (1092)
                      .+  ++.+++.+...+..+-+|-....-..........+..+.+.++++.++.+.     .+.++..+...|+.-..+..
T Consensus       171 ~~--~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~~  243 (327)
T 2xbg_A          171 SP--SGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELLS  243 (327)
T ss_dssp             CT--TSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCBC
T ss_pred             cC--CCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEeccC
Confidence            54  556666554433333343211111111223345788899999988766542     34466654333443333322


Q ss_pred             c-cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-CCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001362          574 L-QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       574 ~-~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      . ......+..+.+.+++..+++ +.+|.+ .+..+.|+.-..+... .....+..+.|.+++. +++++.+|.|.-++-
T Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          244 PLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             TTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             CcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            1 001135788889887665555 456766 4555556554444321 1123578888876554 666677887766553

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.11  E-value=0.00046  Score=77.47  Aligned_cols=248  Identities=11%  Similarity=0.047  Sum_probs=143.1

Q ss_pred             CeeEEEEecC--CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC---C-cEEEEEcCCc
Q 001362          804 AVPCFALSKN--DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARSS  876 (1092)
Q Consensus       804 ~v~~~~~s~d--g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g-~v~iwd~~~~  876 (1092)
                      ....++++|+  +..|..+. .+.|+.+|..+++.... .........+++++ +++++++-...   . .+...+...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence            4568999984  44455554 48899999987766544 33556789999999 77754443321   1 2333333222


Q ss_pred             ee-eEeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE
Q 001362          877 EV-ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV  954 (1092)
Q Consensus       877 ~~-~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~  954 (1092)
                      .. ...+. .-.....+++.| +|.++++-..++.|+.++..++.... ........     .....++|+|+|+.|.++
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~~-----~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDTK-----GSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSCC-----SSCEEEEECTTSSEEEEE
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCCC-----CCcccEEEeCCCCEEEEE
Confidence            11 01111 233456689999 67777666677889999988665411 11111111     123579999999966654


Q ss_pred             --eCCcEEEEEcC--Cceee--eeecc-----C---------CCCCEEEEEE---------ecCCCEEEEEECCCcEEEE
Q 001362          955 --HETHLAIYEAE--ELTCL--KQWFP-----I---------SSVPISQATF---------SCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus       955 --~d~~i~lwd~~--~~~~~--~~~~~-----~---------h~~~v~~l~f---------s~dg~~l~t~~~Dg~i~vw 1005 (1092)
                        ..+.|..++..  ++...  ..+..     +         .-.....+++         .++|.++++-...++|+.+
T Consensus       291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~  370 (433)
T 4hw6_A          291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL  370 (433)
T ss_dssp             ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred             eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence              45678888765  23211  11110     0         1124677999         6777777776667889999


Q ss_pred             EcCCCceEEeecccc-----ccCC-CC-ccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001362         1006 EASNLEVQCRILSTA-----YLRP-TT-SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1006 d~~~~~~~~~~~~~~-----~~~~-~~-~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      +. +|..........     +... .. ...--.|..++++|.++.++++=...+.|+.+++.
T Consensus       371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            85 564432221100     0000 00 00112467899995456666666667788888763

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.01  E-value=0.0027  Score=71.29  Aligned_cols=239  Identities=13%  Similarity=0.072  Sum_probs=135.4

Q ss_pred             CceEEeecC-CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001362          336 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       336 ~V~~v~~sp-dg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ....++++| ++..|.++-.. +.|+.+|..++....                    +.........++|+++|++|+++
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyva  196 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMIIT  196 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEEE
Confidence            568899998 34445554433 789999988765432                    22244678899999999977666


Q ss_pred             eCC----C-EEEEEEccCCCcccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCcC
Q 001362          415 YSK----H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAP  487 (1092)
Q Consensus       415 ~~d----~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~  487 (1092)
                      ...    . .+.+.+.. +.... ...+. .......++++| ++.  ++++-..++.|..++..++........ ....
T Consensus       197 d~~~~~~~~~v~~~~~~-g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~  271 (430)
T 3tc9_A          197 NDQNNNDRPNNYILTRE-SGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW  271 (430)
T ss_dssp             ECCSCTTSEEEEEEEGG-GTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSSC
T ss_pred             eCCCCcccceEEEEeCC-Cceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCCc
Confidence            542    2 34444443 33221 11222 123456789999 565  666666788999999887764322221 2234


Q ss_pred             eEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCc----eEEecCC---------------CCceE-EEEEc--------
Q 001362          488 VYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCT-RMAYS--------  538 (1092)
Q Consensus       488 v~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~----~~~~~~~---------------~~~i~-~~~~s--------  538 (1092)
                      ...+++++  ++. ++++-...+.|..++.+....    ...+...               -.... .++..        
T Consensus       272 P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D  349 (430)
T 3tc9_A          272 EFHIQFHP--SGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSS  349 (430)
T ss_dssp             CEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSS
T ss_pred             ceeEEEcC--CCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccC
Confidence            66788854  566 555556778899988764311    1111110               00122 44543        


Q ss_pred             cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec---------c------ccCCceEEEEEcCC-CCEEEEEeCCCcE
Q 001362          539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------Q------LQHNSVSVVHFDTA-KDQILAAGDDHVI  602 (1092)
Q Consensus       539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------~------~~~~~v~~~~~~p~-~~~l~~~s~dg~i  602 (1092)
                      ++|...++-.    +.+.|+.++. +|... .+.+.         .      ..-.....+++.|+ +..+++-..++.|
T Consensus       350 ~~g~lyvaD~----~n~~I~~i~~-~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rI  423 (430)
T 3tc9_A          350 DEYDFYFCDR----ENHCIRILTP-QGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRI  423 (430)
T ss_dssp             CCEEEEEEEG----GGTEEEEECT-TSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEE
T ss_pred             CCCeEEEEEC----CCcEEEEECC-CCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence            2344444322    2556888884 45443 33322         0      00125788999985 4444444456677


Q ss_pred             EEEECC
Q 001362          603 KIWDMN  608 (1092)
Q Consensus       603 ~iwd~~  608 (1092)
                      +.++++
T Consensus       424 r~i~~e  429 (430)
T 3tc9_A          424 RKIGYE  429 (430)
T ss_dssp             EEEEEC
T ss_pred             EEEccC
Confidence            777653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.00  E-value=0.0091  Score=66.20  Aligned_cols=250  Identities=8%  Similarity=-0.061  Sum_probs=150.5

Q ss_pred             eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-C
Q 001362          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-S  416 (1092)
Q Consensus       338 ~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~  416 (1092)
                      +|.+..+.. +++.+.  ...|+..++.+.....                    +...-..+..++|++.+..|..+. .
T Consensus        76 ~C~~~~~~~-~ll~~~--~~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~  132 (400)
T 3p5b_L           76 ACKAVGSIA-YLFFTN--RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLS  132 (400)
T ss_dssp             SCCCSTTSC-EEEEEE--TTEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETT
T ss_pred             ceeeccccc-eeEEec--cceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecC
Confidence            344443433 344443  3678888888765432                    122446788999999766666654 5


Q ss_pred             CCEEEEEEccCCCcc-cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001362          417 KHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  495 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  495 (1092)
                      .+.|+.+++.+.... .....+.........+++.+.+.. ++++-...+.|.+.+++.......+.........+++.+
T Consensus       133 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp  211 (400)
T 3p5b_L          133 QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP  211 (400)
T ss_dssp             TTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEET
T ss_pred             CCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEec
Confidence            678999998763210 011122223446778999985554 556666778999999876654444444445577888865


Q ss_pred             cCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001362          496 KENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  574 (1092)
Q Consensus       496 ~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  574 (1092)
                      . ++.++++-.. .+.|...+++...........-.....+++++++..|+.+-.   +...|..+|.............
T Consensus       212 ~-~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~  287 (400)
T 3p5b_L          212 V-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDE  287 (400)
T ss_dssp             T-TTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCCEEEEECS
T ss_pred             c-cCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCccEEEEeCC
Confidence            4 2334444323 477888888765554444444456789999998888887743   2567999998654433333321


Q ss_pred             cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001362          575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       575 ~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                      . .......+++. .+..+++-...+.|..+|..+|+.+..+.
T Consensus       288 ~-~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          288 K-RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             S-TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             C-CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            1 11345566663 23344455566788888877777666654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.97  E-value=0.0021  Score=72.19  Aligned_cols=238  Identities=16%  Similarity=0.087  Sum_probs=136.4

Q ss_pred             CceEEeecCC---CceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001362          336 SPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       336 ~V~~v~~spd---g~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      ....++|+|+   |. |.++-. .+.|+.+|..++....                    +.+.......++|+++|++++
T Consensus       140 ~P~gvavd~~s~~g~-Lyv~D~-~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV  197 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDD-LYWVGQ-RDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV  197 (433)
T ss_dssp             CCCEEEECTTTTTCE-EEEECB-TSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred             CCceEEEccccCCCE-EEEEeC-CCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence            5779999995   55 444433 3889999998776543                    222445689999999999444


Q ss_pred             EEeCC---C-EEEEEEccCCCcccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECCCCceeEEE-ec-CC
Q 001362          413 VAYSK---H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG-HG  485 (1092)
Q Consensus       413 s~~~d---~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~-~~  485 (1092)
                      +....   . .+...+...+....  ..+. .-.....+++.| +|.  ++++-..++.|+.+|..++.....+ .. ..
T Consensus       198 ad~~~~~~~~gv~~~~~~~~~~~~--~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~  272 (433)
T 4hw6_A          198 VDDQSSDTNTGIYLFTRASGFTER--LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK  272 (433)
T ss_dssp             EECCSCTTSEEEEEECGGGTTCCE--EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred             EcCCCCcccceEEEEECCCCeecc--cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence            43311   2 23444433322111  1121 233456789999 666  5666667788999998878763333 21 12


Q ss_pred             cCeEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCc----eEEecCC---------------CCceEEEEE--------
Q 001362          486 APVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCTRMAY--------  537 (1092)
Q Consensus       486 ~~v~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~----~~~~~~~---------------~~~i~~~~~--------  537 (1092)
                      ..-..+++++  ++. +.++-...+.|+.++++....    ...+...               -.....+++        
T Consensus       273 ~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~  350 (433)
T 4hw6_A          273 GSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAG  350 (433)
T ss_dssp             SSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTT
T ss_pred             CCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccc
Confidence            2234577754  556 555556678899988763211    1111110               113566888        


Q ss_pred             -ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc---------------cCCceEEEEEc-CCCCEEEEEeCCC
Q 001362          538 -SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------------QHNSVSVVHFD-TAKDQILAAGDDH  600 (1092)
Q Consensus       538 -s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------------~~~~v~~~~~~-p~~~~l~~~s~dg  600 (1092)
                       .++|...++-.    +.+.|+.++. +|.. .++.+...               .-.....+++. +++..+++-..++
T Consensus       351 dd~~g~lyvaD~----~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~  424 (433)
T 4hw6_A          351 EEDEYDFYFCDR----DSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNH  424 (433)
T ss_dssp             SSCCEEEEEEET----TTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred             cCCCCcEEEEEC----CCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCC
Confidence             56666555432    2567888885 5543 34433210               11346778888 4554444444566


Q ss_pred             cEEEEECC
Q 001362          601 VIKIWDMN  608 (1092)
Q Consensus       601 ~i~iwd~~  608 (1092)
                      .|+.++++
T Consensus       425 rIr~i~~e  432 (433)
T 4hw6_A          425 RVRKIAPE  432 (433)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecC
Confidence            77777653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.95  E-value=0.013  Score=62.59  Aligned_cols=239  Identities=9%  Similarity=-0.026  Sum_probs=145.9

Q ss_pred             EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-EEEecCCcCe
Q 001362          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPV  488 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v  488 (1092)
                      +|+.+ ....|+..++.+....... .+ .......+++|.+.+.. ++++-...+.|..+++..+... ..+...-...
T Consensus         6 ~ll~~-~~~~I~~i~l~~~~~~~~~-~~-~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p   81 (318)
T 3sov_A            6 LLLYA-NRRDLRLVDATNGKENATI-VV-GGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP   81 (318)
T ss_dssp             EEEEE-CEEEEEEEETTCTTSCCEE-EE-EEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred             EEEEE-ccCeEEEEECCCCceEEEE-Ee-cCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence            34443 3456899999875311111 12 22335678999986654 5556667788999998776422 2222222345


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001362          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1092)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1092)
                      ..+++.+. ++.+.++-...+.|.+++++.................+++.|.+..|+.....  ....|+..+...... 
T Consensus        82 ~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~~-  157 (318)
T 3sov_A           82 DGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSR-  157 (318)
T ss_dssp             CEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCSC-
T ss_pred             cEEEEEcC-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCCe-
Confidence            56776532 44566666677899999987655444444444567899999977777665421  245688888764332 


Q ss_pred             EEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001362          569 RTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1092)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  647 (1092)
                      ..+....  -.....+++++++..|+.+. ..+.|..+|+...........  .......+++.. +.++.+-...+.|.
T Consensus       158 ~~~~~~~--l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~  232 (318)
T 3sov_A          158 FIIINSE--IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSIL  232 (318)
T ss_dssp             EEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred             EEEEECC--CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEE
Confidence            2222111  24578999999877776654 567899999875443333321  223346777753 45555656678899


Q ss_pred             EEECCCCceeeecc
Q 001362          648 ILETPESNSVDAAG  661 (1092)
Q Consensus       648 iw~~~~~~~~~~~~  661 (1092)
                      .++..+++....+.
T Consensus       233 ~~~~~~G~~~~~i~  246 (318)
T 3sov_A          233 ACNKYTGEGLREIH  246 (318)
T ss_dssp             EEETTTCCSCEEEE
T ss_pred             EEECCCCCceEEEe
Confidence            89887775544443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.89  E-value=0.012  Score=62.67  Aligned_cols=233  Identities=12%  Similarity=0.010  Sum_probs=141.7

Q ss_pred             CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-eCCCEEEEEEccCCCcccce
Q 001362          356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQ  434 (1092)
Q Consensus       356 d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~~~~~~~  434 (1092)
                      ...|+..++.+........                 +. ....+..++|.+.+..|..+ ...+.|..+++.++..... 
T Consensus        12 ~~~I~~i~l~~~~~~~~~~-----------------~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~-   72 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIV-----------------VG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-   72 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEE-----------------EE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred             cCeEEEEECCCCceEEEEE-----------------ec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence            3679999988764211100                 11 12356789999965555554 4567899999887642221 


Q ss_pred             EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe--cCCeEE
Q 001362          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIK  512 (1092)
Q Consensus       435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~  512 (1092)
                       .+...-.....+++.+.+.. ++++-...+.|.+++++.......+.........+++.+. + ..|+.+.  ..+.|.
T Consensus        73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~-~-g~ly~td~~~~~~I~  148 (318)
T 3sov_A           73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS-S-GFMYWTDWGEVPKIE  148 (318)
T ss_dssp             -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG-G-TEEEEEECSSSCEEE
T ss_pred             -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC-C-CEEEEEecCCCCEEE
Confidence             12222235678999876654 4556666789999997654433333334455678888653 2 3444444  357788


Q ss_pred             EEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCE
Q 001362          513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ  592 (1092)
Q Consensus       513 vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  592 (1092)
                      ..+++...........-.....+++++++..|+.+-.   ....|..+|...........+..   .....+++.. +..
T Consensus       149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P~glav~~-~~l  221 (318)
T 3sov_A          149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFE-DIL  221 (318)
T ss_dssp             EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC---SCEEEEEEET-TEE
T ss_pred             EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC---CCceEEEEeC-CEE
Confidence            8887754444333333445689999998888877643   35679999986443322222222   4566777753 334


Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeC
Q 001362          593 ILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       593 l~~~s~dg~i~iwd~~~~~~~~~~~~  618 (1092)
                      +.+-...+.|..++..+|+....+..
T Consensus       222 ywtd~~~~~V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          222 YWTDWSTHSILACNKYTGEGLREIHS  247 (318)
T ss_dssp             EEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             EEEecCCCeEEEEECCCCCceEEEeC
Confidence            44555678888899887776666543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.88  E-value=0.012  Score=70.69  Aligned_cols=238  Identities=10%  Similarity=-0.025  Sum_probs=146.3

Q ss_pred             EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC----ceeEEEecCC
Q 001362          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG  485 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~  485 (1092)
                      +|+.+. ...|+..++......    .+......+..++|.+.+.. ++++-...+.|+.+++...    .....+....
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l  470 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  470 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             cccccc-ccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence            444443 344777787765422    22334456789999986664 5556666788999998753    2223333234


Q ss_pred             cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001362          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      .....|++.+. .+.+.++-...+.|.+.+++.......+.........|++.|.+.+|+..-..  ....|...++...
T Consensus       471 ~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~  547 (791)
T 3m0c_C          471 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV  547 (791)
T ss_dssp             SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred             CCcceeeeeec-CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence            45667777543 33566677778899999988665544444444567899999987777765421  1256888888654


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001362          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      .....+...   ......|++.+.+..|+.+. ..+.|...++........+...........+++.. +.++++-...+
T Consensus       548 ~~~~lv~~~---l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~  623 (791)
T 3m0c_C          548 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINE  623 (791)
T ss_dssp             CEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTT
T ss_pred             ceEEEEeCC---CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCC
Confidence            443333322   25688999998877777765 55689999987665555554333333334566532 34444445567


Q ss_pred             eEEEEECCCCceeeec
Q 001362          645 RIKILETPESNSVDAA  660 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~  660 (1092)
                      .|...+..++..+..+
T Consensus       624 ~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          624 AIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEEEETTTCCCCEEE
T ss_pred             EEEEEeCCCCcceEEe
Confidence            8888887766554444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.81  E-value=0.0077  Score=63.45  Aligned_cols=197  Identities=12%  Similarity=0.157  Sum_probs=125.8

Q ss_pred             CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC---CCC---EEEEEeC---CCcEEEEEcC--CceeeEe
Q 001362          814 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH---DNN---VIAIGMD---DSTILIYNAR--SSEVISK  881 (1092)
Q Consensus       814 g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~---d~~---~lasg~~---dg~v~iwd~~--~~~~~~~  881 (1092)
                      ..+++... .+.+.+||+ +|+.++.+..  +.+..+.+-|.   +++   ++++...   +++|.+|++.  +++ +..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            34444333 578999999 8998888853  56777766651   111   2333333   5799999773  333 444


Q ss_pred             ecc------cc-CCeEEEEE--cCC-CC-EEEEEeCCCcEEEEEcCC---CceeeeeeeecCCCCcCCCCCceEEEEecC
Q 001362          882 LEG------HS-KRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1092)
Q Consensus       882 l~~------h~-~~V~~l~~--spd-g~-~l~s~s~Dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  947 (1092)
                      +..      .. ..+..+++  +|. ++ +++....+|.+..|++..   +.. ..+.++.+.-.    +.+..++..+.
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~-~~~lVR~f~lg----sq~EgcvvDd~  190 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI-SGKKVRAFKMN----SQTEGMAADDE  190 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE-EEEEEEEEECS----SCEEEEEEETT
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc-cceEEEEecCC----CCcceEEEcCC
Confidence            421      11 56777888  775 44 577788899999999843   222 23333333222    25789999998


Q ss_pred             CCEEEEEeCC-cEEEEEcC-----CceeeeeeccCC-CCCEEEEEE--ecCCC-EEEEEE-CCCcEEEEEcC-CCceEEe
Q 001362          948 QTRFLLVHET-HLAIYEAE-----ELTCLKQWFPIS-SVPISQATF--SCDCR-MVFTSF-VDGTLSIHEAS-NLEVQCR 1015 (1092)
Q Consensus       948 g~~la~~~d~-~i~lwd~~-----~~~~~~~~~~~h-~~~v~~l~f--s~dg~-~l~t~~-~Dg~i~vwd~~-~~~~~~~ 1015 (1092)
                      ...|.++.+. .|..|+.+     +++.+..+-.++ ...+..|++  .++|+ ||++++ .+.+..|||.. +.+.+.+
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~  270 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD  270 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence            8888887554 46666644     344554432333 347888887  56666 677666 56799999997 7888888


Q ss_pred             eccc
Q 001362         1016 ILST 1019 (1092)
Q Consensus      1016 ~~~~ 1019 (1092)
                      |...
T Consensus       271 f~Ig  274 (355)
T 3amr_A          271 FRIT  274 (355)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            8633

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.80  E-value=0.0064  Score=68.07  Aligned_cols=249  Identities=11%  Similarity=0.114  Sum_probs=141.9

Q ss_pred             cEEEEEECC-CCCEEEEEe-CCCEEEEEEccCCCcccceEEEc-ccccceeEEEE-------ecCCCcEEEEEEeCCC--
Q 001362          398 SVNRVVWSP-DGSLLGVAY-SKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAF-------SAPCKQISVITCGDDK--  465 (1092)
Q Consensus       398 ~V~~l~~sp-dg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~-------s~d~~~l~l~s~~~d~--  465 (1092)
                      ....|+|+| ++..|.++. ..+.|++.|.+++.... +.... ........++|       +++|++  |+.+...+  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~  216 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK  216 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence            467899999 455555554 44678888888764322 11110 12235889999       999984  44443332  


Q ss_pred             -----cEEEEECCC-Ccee-----EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC-------CCCc------
Q 001362          466 -----TIKVWDAVT-GSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------SLGA------  521 (1092)
Q Consensus       466 -----~i~vwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-------~~~~------  521 (1092)
                           .|.+.+... |...     ..+.... ....+++++. ++.++++-..++.|..+|+.       ++..      
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             cccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence                 266666443 2221     2222212 2345566443 45667777788899999987       4432      


Q ss_pred             -----e-EEe-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC--CCCeEE--EEEeecc------------ccC
Q 001362          522 -----R-VDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE--SEGAIK--RTYQGLQ------------LQH  578 (1092)
Q Consensus       522 -----~-~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~--~~~~~~--~~~~~~~------------~~~  578 (1092)
                           . ..+ .........++|+|+|+.|+.+-.   ....|+.++.  .++...  ..+.+..            ..-
T Consensus       295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f  371 (496)
T 3kya_A          295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM  371 (496)
T ss_dssp             GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred             ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence                 1 111 222345678999999997666532   3567888554  344321  2333320            001


Q ss_pred             CceE-EEEEc-------CCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC----------------------CCCCCceE
Q 001362          579 NSVS-VVHFD-------TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG----------------------GLPENPRI  628 (1092)
Q Consensus       579 ~~v~-~~~~~-------p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~v  628 (1092)
                      .... .++..       +++..+++-..+..|+.++ .+|. +.++...+                      .......+
T Consensus       372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI  449 (496)
T 3kya_A          372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL  449 (496)
T ss_dssp             SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred             CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence            2234 45554       4566666666788899998 4554 44443221                      01224578


Q ss_pred             EEccC-CCEEEEEeCCCeEEEEECCCCce
Q 001362          629 CFNKN-GTLLAVIANENRIKILETPESNS  656 (1092)
Q Consensus       629 ~~s~~-~~~l~~~~~dg~i~iw~~~~~~~  656 (1092)
                      +++++ |.++++=+.++.|+.+++.....
T Consensus       450 avd~~~g~lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          450 VYDDVKEMFYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred             EEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence            88886 76666666778888888876543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.79  E-value=0.024  Score=68.23  Aligned_cols=251  Identities=9%  Similarity=-0.038  Sum_probs=148.9

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-  414 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-  414 (1092)
                      .-+|.+..+.. +|+.+  ....|+..++.......                    +......+..++|.+.+..|+.+ 
T Consensus       386 ~~~C~~~~~~p-~Ll~a--n~~~Ir~i~l~~~~~~~--------------------l~~~~~~~~gl~~d~~~~~lY~sD  442 (791)
T 3m0c_C          386 TKACKAVGSIA-YLFFT--NRHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSD  442 (791)
T ss_dssp             CCCCEETTSCC-EEEEE--CBSSEEEECTTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEE
T ss_pred             Cceeeeccccc-ccccc--cccceeEeeccCCccee--------------------eecCCCceEEEeecccCCeeEEee
Confidence            34455544433 33433  23567877777654332                    22234577899999966665554 


Q ss_pred             eCCCEEEEEEccCCCcc-cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEee
Q 001362          415 YSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  493 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~  493 (1092)
                      ...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++........+.........|++
T Consensus       443 ~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaV  521 (791)
T 3m0c_C          443 LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV  521 (791)
T ss_dssp             TTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEE
T ss_pred             ccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEE
Confidence            45678998988753210 111123324455778999988865 5566677889999998755443334444456788888


Q ss_pred             cccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001362          494 HAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  572 (1092)
Q Consensus       494 ~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~  572 (1092)
                      .+. .+.++++-... +.|.+.+++...........-.....|++++.+..|+.+-.   +...|...++........+.
T Consensus       522 Dp~-~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~---~~~~I~~~d~dG~~~~~v~~  597 (791)
T 3m0c_C          522 DPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILE  597 (791)
T ss_dssp             ETT-TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEE
T ss_pred             ecC-CCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---CCCcEEEEecCCCceEEEec
Confidence            654 23344443333 77888888765555454444457889999988888877643   25679999986554444433


Q ss_pred             eccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEe
Q 001362          573 GLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       573 ~~~~~~~~v~~~~~~p~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                      ... ......++++.  +.+|+.+ ...+.|...|..+|+.+..+.
T Consensus       598 ~~~-~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          598 DEK-RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             CTT-TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             CCC-ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence            311 11234556653  3355544 456778888877776665554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.74  E-value=0.016  Score=64.85  Aligned_cols=253  Identities=13%  Similarity=0.107  Sum_probs=143.1

Q ss_pred             CceEEeecC-CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE-------CCC
Q 001362          336 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-------SPD  407 (1092)
Q Consensus       336 ~V~~v~~sp-dg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~-------spd  407 (1092)
                      ....|+|+| ++..|+++....+.|++.|..++........                -...-.....++|       +++
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~----------------~~~~~~~p~~ia~~~~~~~~d~~  203 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI----------------NTIPTNRIRSIAFNKKIEGYADE  203 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC----------------TTSSCSBEEEEEECCCBTTTBCT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc----------------CccccCCCcEEEEeecccccCCC
Confidence            467899999 3555666665557788899887765532100                0112246899999       999


Q ss_pred             CCEEEEEeCCC-------EEEEEEccC-CCccc-c-eEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC----
Q 001362          408 GSLLGVAYSKH-------IVQLYAYHG-GSDAR-Q-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV----  473 (1092)
Q Consensus       408 g~~las~~~d~-------~i~iwd~~~-~~~~~-~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~----  473 (1092)
                      |++|+++...+       .|.+.+... |.... . ...+... .....++++|++.. ++++-..++.|..+|++    
T Consensus       204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~  281 (496)
T 3kya_A          204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK  281 (496)
T ss_dssp             TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred             CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence            99777765543       366666444 22211 0 0122211 23457889996654 56667778889999987    


Q ss_pred             ---CCce-----------eEE-Ee-cCCcCeEEEeecccCCccE-EEEEecCCeEEEEEcCCCCce----EEecCC---C
Q 001362          474 ---TGSR-----------TYS-FE-GHGAPVYSLCPHAKENIHF-IFSISVDGKIKAWLYDSLGAR----VDYDAP---G  529 (1092)
Q Consensus       474 ---~~~~-----------~~~-~~-~~~~~v~~~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~----~~~~~~---~  529 (1092)
                         ++..           ... +. +.......++|++  ++.+ .++-+....|+.++.+.....    ..+.+.   .
T Consensus       282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~  359 (496)
T 3kya_A          282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS  359 (496)
T ss_dssp             HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred             cccCceeecccccccccccceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence               5553           122 22 2234457888855  5664 555566788988776543211    111110   0


Q ss_pred             ------------CceE-EEEEc-------cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc-------------
Q 001362          530 ------------LGCT-RMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-------------  576 (1092)
Q Consensus       530 ------------~~i~-~~~~s-------~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-------------  576 (1092)
                                  .... .++..       ++|...++-.    +...|+.++ .+|. +.++.+...             
T Consensus       360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~----~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~  433 (496)
T 3kya_A          360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDR----LNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTD  433 (496)
T ss_dssp             CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEG----GGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCC
T ss_pred             cccCCcccccccCCCeEEEEEccccccccCCCeEEEEEC----CCCEEEEEe-CCCC-EEEEecccccccccCccccccC
Confidence                        1223 44554       4455444433    266799998 4563 445544310             


Q ss_pred             --------cCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEE
Q 001362          577 --------QHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLT  614 (1092)
Q Consensus       577 --------~~~~v~~~~~~p~-~~~l~~~s~dg~i~iwd~~~~~~~~  614 (1092)
                              .-.....+++.++ +..+++=..+..|+.++++......
T Consensus       434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence                    0134667888886 5555555566778888776654443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.70  E-value=0.011  Score=62.19  Aligned_cols=193  Identities=12%  Similarity=0.134  Sum_probs=120.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccC--Ccc---EEEEE-ec--CCeEEEEEcCCCC-ceEEecC
Q 001362          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE--NIH---FIFSI-SV--DGKIKAWLYDSLG-ARVDYDA  527 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~---~l~s~-~~--dg~i~vwd~~~~~-~~~~~~~  527 (1092)
                      +++.....+-+.+||+ +|+.++.+..  +.++.+.+.+.-  +++   ++++. -.  +++|++|+++... ....+..
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~  118 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD  118 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence            4666667788999998 9999988864  456666554310  111   22333 33  5789999875322 2333311


Q ss_pred             ------CC-CceEEEEE--ccC-CC-EEEEEecCCCCceeEEEEeC-------CCCeEEEEEeeccccCCceEEEEEcCC
Q 001362          528 ------PG-LGCTRMAY--SAN-GR-RLFSCGTSKEGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHFDTA  589 (1092)
Q Consensus       528 ------~~-~~i~~~~~--s~d-g~-~l~~~~~~~~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~~p~  589 (1092)
                            .. ..+..+|+  +|. ++ ++++...    ++.+..|++       .+.+.++++...    ..+..|...+.
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~  190 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE  190 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence                  11 45667777  774 44 3444433    456777777       234566666653    47889999999


Q ss_pred             CCEEEEEeCCCcEEEEECC-----CCceEEEEeCCCCCCCCceEEE--ccCCC-EEEEEe-CCCeEEEEECC-CCceeee
Q 001362          590 KDQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICF--NKNGT-LLAVIA-NENRIKILETP-ESNSVDA  659 (1092)
Q Consensus       590 ~~~l~~~s~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~~~-~l~~~~-~dg~i~iw~~~-~~~~~~~  659 (1092)
                      ..+|+.+-++..|..++.+     +++.+..+....-...+..+++  .++++ +|++.+ .+.++.+|+.. +.+.+..
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~  270 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD  270 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence            9999999998777777755     3445555433222234677777  45555 566665 57899999996 4444444


Q ss_pred             c
Q 001362          660 A  660 (1092)
Q Consensus       660 ~  660 (1092)
                      +
T Consensus       271 f  271 (355)
T 3amr_A          271 F  271 (355)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.63  E-value=0.0072  Score=63.09  Aligned_cols=202  Identities=12%  Similarity=0.093  Sum_probs=124.3

Q ss_pred             CeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEE-ecC----CC--CCeEEEEE---cCCCCCEEEEEeC-------
Q 001362          804 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILT-IMP----PS--PTATSLAF---NPHDNNVIAIGMD-------  864 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~-~~~----~~--~~i~~l~~---s~~d~~~lasg~~-------  864 (1092)
                      -..++.|.+....+..++  .++|..||...+..... +..    ..  ..+..+.+   .| +++++++...       
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence            345788988666666665  79999999986544333 222    11  13578999   68 6777776442       


Q ss_pred             ------CCcEEEEEcC---CceeeEeec--ccc-----------CCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCcee
Q 001362          865 ------DSTILIYNAR---SSEVISKLE--GHS-----------KRVTGLVFSDALNILVSSGGD-AQIFVWDVDGWGIQ  921 (1092)
Q Consensus       865 ------dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~spdg~~l~s~s~D-g~i~iwd~~~~~~~  921 (1092)
                            +..|..||+.   +++.+....  +..           .....++..++|+..++++.- +.|...+.+.....
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~  172 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS  172 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence                  6789999999   787664433  211           247889999999999998887 77666665543221


Q ss_pred             eeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCcee--eeeeccCC---CCCEEEE-EEecCCCE-E
Q 001362          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC--LKQWFPIS---SVPISQA-TFSCDCRM-V  993 (1092)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~--~~~~~~~h---~~~v~~l-~fs~dg~~-l  993 (1092)
                      . ..+.......  ......+++.|||..|++. ..+.+..+|+.+...  +..-..+.   -.....+ .--.+|+. |
T Consensus       173 ~-~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll  249 (334)
T 2p9w_A          173 T-FAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL  249 (334)
T ss_dssp             E-EEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred             e-eeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence            1 1122211111  1246799999999988883 478899999884332  21100021   1233443 33457877 5


Q ss_pred             EEEECCCcEEEEEcCC
Q 001362          994 FTSFVDGTLSIHEASN 1009 (1092)
Q Consensus       994 ~t~~~Dg~i~vwd~~~ 1009 (1092)
                      ++.+..+.+.+.+-+.
T Consensus       250 V~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          250 VGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEETTEEEEEECSST
T ss_pred             EEcCCCCEEEEECCCC
Confidence            5555566555555444

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.60  E-value=0.021  Score=61.92  Aligned_cols=229  Identities=12%  Similarity=0.072  Sum_probs=124.9

Q ss_pred             CCeeEEEEecCCCEEEEEeCCeEEEEEcCCce-eeEEec---CCCCCeEEEEEcCC---CCCEEEEEeC---C----CcE
Q 001362          803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-TILTIM---PPSPTATSLAFNPH---DNNVIAIGMD---D----STI  868 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---d~~~lasg~~---d----g~v  868 (1092)
                      .....++|.|||+++++-.+|.|++++ .+++ .+..+.   ........++++|+   ++.+.++-+.   +    ..|
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            346789999999977776689999987 3454 222221   12356889999993   2444443332   3    567


Q ss_pred             EEEEcCCc-------eee-Eeecc-ccCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEcCCCcee-----
Q 001362          869 LIYNARSS-------EVI-SKLEG-HSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ-----  921 (1092)
Q Consensus       869 ~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~spdg~~l~s~s~D-------------g~i~iwd~~~~~~~-----  921 (1092)
                      ..|+....       +.+ ..+.. .......|+|.|||.++++.+..             |.|.-.+.+. +..     
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~npf  186 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADNPF  186 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTSSS
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCCCC
Confidence            77877654       111 21221 11123579999999988875532             3344444332 100     


Q ss_pred             -eeeeeecCCCCcCCCCCceEEEEec-CCCEEEE--EeCC--cEEEEEcCCce------------------eeeeeccCC
Q 001362          922 -TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLL--VHET--HLAIYEAEELT------------------CLKQWFPIS  977 (1092)
Q Consensus       922 -~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~--~~d~--~i~lwd~~~~~------------------~~~~~~~~h  977 (1092)
                       ......  .++.    ....++|+| +|++.++  +.+.  .|.+..  .+.                  .+..+.. .
T Consensus       187 ~~~~i~a--~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~-~  257 (354)
T 3a9g_A          187 PNSPIWS--YGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS-E  257 (354)
T ss_dssp             TTCCEEE--ECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT-C
T ss_pred             CCCcEEE--EccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC-C
Confidence             000111  1111    356899999 6777776  2222  244332  221                  1111101 1


Q ss_pred             CCCEEEEEEe-------cCCCEEEEEECCCcEEEEEcCCC-ceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEE
Q 001362          978 SVPISQATFS-------CDCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1049 (1092)
Q Consensus       978 ~~~v~~l~fs-------~dg~~l~t~~~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~ 1049 (1092)
                      ......++|.       .+|.++++.-..+.|...++... .......   ....    ..-++..+++.| |+.++++.
T Consensus       258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~----~~~rp~~v~~~p-DG~lyv~~  329 (354)
T 3a9g_A          258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFKN----VFGRLRDVVIDD-DGGILIST  329 (354)
T ss_dssp             CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECTT----TSCCEEEEEECT-TSCEEEEE
T ss_pred             CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---eccC----CCCCeeEEEECC-CCcEEEEE
Confidence            3467888883       67877777666778888888753 3321111   1111    112456788998 56666655


Q ss_pred             e
Q 001362         1050 L 1050 (1092)
Q Consensus      1050 ~ 1050 (1092)
                      .
T Consensus       330 ~  330 (354)
T 3a9g_A          330 S  330 (354)
T ss_dssp             C
T ss_pred             e
Confidence            4

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.59  E-value=0.00043  Score=83.00  Aligned_cols=234  Identities=9%  Similarity=-0.025  Sum_probs=135.2

Q ss_pred             CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC----CceeEEEecCCcCeEEEe
Q 001362          417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEGHGAPVYSLC  492 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~  492 (1092)
                      .+.|+..++.+.+...    +......+..++|.+.+.. ++++-...+.|+.+++.+    ......+.........++
T Consensus       385 ~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla  459 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  459 (699)
T ss_dssp             TTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred             ccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence            3467777877654322    1122335678999987764 444445667899999875    222222211112344566


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001362          493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  572 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~  572 (1092)
                      +.+. ++.++++-...+.|.+++++.......+.........+++.|++.+|+.....  ..+.|+.+++.... ...+.
T Consensus       460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~-~~~l~  535 (699)
T 1n7d_A          460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVD-IYSLV  535 (699)
T ss_dssp             CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCC-CCEES
T ss_pred             EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCC-eeEEE
Confidence            6433 34555665667889999887654444433333455778999977766654321  12568777765332 22222


Q ss_pred             eccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001362          573 GLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       573 ~~~~~~~~v~~~~~~p~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      ...  ......++++|++..|+.+ +..+.|..+++........+...........+++..+ .++++....+.|..++.
T Consensus       536 ~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          536 TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR  612 (699)
T ss_dssp             CSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred             eCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence            111  2456789999987666655 4667899999875444333332222223456666554 45555566789999998


Q ss_pred             CCCceeeeccc
Q 001362          652 PESNSVDAAGV  662 (1092)
Q Consensus       652 ~~~~~~~~~~~  662 (1092)
                      .+++.+..+..
T Consensus       613 ~~G~~~~~i~~  623 (699)
T 1n7d_A          613 LTGSDVNLLAE  623 (699)
T ss_dssp             TTEEEEECCCT
T ss_pred             cCCCceEEeec
Confidence            87776666543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.55  E-value=0.017  Score=62.84  Aligned_cols=228  Identities=11%  Similarity=0.075  Sum_probs=120.4

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCcee--eEEec---CCCCCeEEEEEcCCC---CCEEEEEeC-C-----CcEE
Q 001362          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIM---PPSPTATSLAFNPHD---NNVIAIGMD-D-----STIL  869 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~--~~~~~---~~~~~i~~l~~s~~d---~~~lasg~~-d-----g~v~  869 (1092)
                      ....++|.|||+++++-..|.|.+++  +++.  +..+.   ........++|+| +   +..|.++.. .     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence            46789999999977776679999998  3432  22221   1235678999999 6   334444333 2     6788


Q ss_pred             EEEcCCce-----e-eEeec---cccCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEcCCCcee------
Q 001362          870 IYNARSSE-----V-ISKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ------  921 (1092)
Q Consensus       870 iwd~~~~~-----~-~~~l~---~h~~~V~~l~~spdg~~l~s~s~D-------------g~i~iwd~~~~~~~------  921 (1092)
                      .|+...+.     . +..+.   +.......++|.|||.+.++.+..             |.|.-++.+. ...      
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~  187 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL  187 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence            88877531     1 22233   111123579999999887775432             3444444432 100      


Q ss_pred             -----eeeeeecCCCCcCCCCCceEEEEec-CCCEEEE-EeCCcE------EEEEcCCce------------------ee
Q 001362          922 -----TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLL-VHETHL------AIYEAEELT------------------CL  970 (1092)
Q Consensus       922 -----~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~-~~d~~i------~lwd~~~~~------------------~~  970 (1092)
                           ......  .++.    ....++|+| +|.+.++ ...+.+      .|.-+..+.                  .+
T Consensus       188 ~~~~~~~~i~a--~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~  261 (352)
T 2ism_A          188 GRRGARPEVYS--LGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL  261 (352)
T ss_dssp             TCTTSCTTEEE--ECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred             CCCCCCccEEE--EcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence                 000100  0111    256789999 6777766 222221      233333222                  11


Q ss_pred             eeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEee-ccccccCCCCccCcccceEEEECCCCCCEEEEE
Q 001362          971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI-LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1049 (1092)
Q Consensus       971 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~ 1049 (1092)
                      ..+  .+......++| .+|.++++....+.|...++......... ....++..     .-++..+++.| |+.++++.
T Consensus       262 ~~~--~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~  332 (352)
T 2ism_A          262 YFW--PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTT  332 (352)
T ss_dssp             EEC--TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEE
T ss_pred             Eec--CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEE
Confidence            111  22345677888 57777666656677777777654311000 00011111     12456788888 46655554


Q ss_pred             e
Q 001362         1050 L 1050 (1092)
Q Consensus      1050 ~ 1050 (1092)
                      .
T Consensus       333 ~  333 (352)
T 2ism_A          333 S  333 (352)
T ss_dssp             C
T ss_pred             e
Confidence            3

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.53  E-value=0.00048  Score=82.53  Aligned_cols=205  Identities=9%  Similarity=0.007  Sum_probs=123.6

Q ss_pred             CCeeEEEEecCCCEEEEEe--CCeEEEEEcCC----ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001362          803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  876 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  876 (1092)
                      ..+..++|++.+..|..+.  .+.|+.+++.+    ......+.........+++.+.+++++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            3456789998887777775  47899999875    22222222222345678888635666666566789999998865


Q ss_pred             eeeEeeccccCCeEEEEEcCCCCEEEEEeC-C-CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE
Q 001362          877 EVISKLEGHSKRVTGLVFSDALNILVSSGG-D-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV  954 (1092)
Q Consensus       877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~  954 (1092)
                      .....+.........|++.|++.+|..+.. . +.|.+.++.......  .+..   ..   .....|+|+|++..|..+
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~~---~l---~~PnGlavd~~~~~LY~a  557 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE---NI---QWPNGITLDLLSGRLYWV  557 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESCS---SC---SSCCCEEECTTTCCEEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEeC---CC---CCccEEEEeccCCEEEEE
Confidence            443333333345678899997655544432 2 678777776532111  1111   11   135689999987766654


Q ss_pred             --eCCcEEEEEcCCceeeeeeccC--CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeec
Q 001362          955 --HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       955 --~d~~i~lwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                        ..+.|..+++.... ...+...  .......|++..+ .++++....+.|..++..+|+.+..+.
T Consensus       558 D~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          558 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             ETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             ecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence              45679999986432 2222221  1233445566444 445555566889999998898876665

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.44  E-value=0.16  Score=54.57  Aligned_cols=236  Identities=12%  Similarity=0.091  Sum_probs=145.1

Q ss_pred             EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001362          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  419 (1092)
Q Consensus       340 v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~  419 (1092)
                      .-.+|..+ ++|.-. ..++.|+|+++.+.+..+.+                    ..+|..=.|-.+. .|+-.+ +..
T Consensus        71 AIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~ta  126 (494)
T 1bpo_A           71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA  126 (494)
T ss_dssp             EEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETT-EEEEEC-SSE
T ss_pred             eeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCC-eEEEEc-CCe
Confidence            44577776 555543 57899999999888775332                    2467777776544 444443 445


Q ss_pred             EEEEEccCCCcccceEEEcccc----cceeEEEEecCCCcEEEEEEe------CCCcEEEEECCCCceeEEEecCCcCeE
Q 001362          420 VQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1092)
Q Consensus       420 i~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~l~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~~v~  489 (1092)
                      |+-|++++.....  ..+..|.    ..|..-..++|.+++ +++|=      -.|.+.+|..+.+ .-+.+.||.....
T Consensus       127 VyHWsi~~~s~P~--kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~  202 (494)
T 1bpo_A          127 VYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA  202 (494)
T ss_dssp             EEEEESSSSCCCE--EEEECCGGGTTCEEEEEEECTTSSEE-EEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEE
T ss_pred             eEEecccCCCCch--hheecchhcccceEEEEEECCCCCeE-EEEeecccCCcccceEEEeecccc-ccchheeeeeeeE
Confidence            9999997643322  2344443    357777788999963 33332      3467889996655 4567788887776


Q ss_pred             EEeecccCCc-cEEEEEecC---CeEEEEEcCCC---C-----ceEEecCC----CCceEEEEEccCCCEEEEEecCCCC
Q 001362          490 SLCPHAKENI-HFIFSISVD---GKIKAWLYDSL---G-----ARVDYDAP----GLGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       490 ~~~~~~~~~~-~~l~s~~~d---g~i~vwd~~~~---~-----~~~~~~~~----~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      .+.+...+.. .++..+...   +.+++-++...   .     ....+..+    ..-..++..++.-..++..+.    
T Consensus       203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK----  278 (494)
T 1bpo_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----  278 (494)
T ss_dssp             EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----
T ss_pred             EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----
Confidence            6655332222 233434332   78999988654   1     11111111    122446777777777777654    


Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001362          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  610 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~  610 (1092)
                      .|.++++|+.++.++..-+-..   ..|...+......-+++....|.|.--.++..
T Consensus       279 ~G~i~lyDleTgt~i~~nrIs~---~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          279 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             CceEEEEecccceeeeeecccC---CceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            6789999999999987766544   56655555555555666666666555544443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.31  E-value=0.039  Score=59.84  Aligned_cols=237  Identities=10%  Similarity=0.085  Sum_probs=125.6

Q ss_pred             CeeEEEEecCCC-EEEEEeCCeEEEEEcCCceeeEE---e----cCCCCCeEEEEEcCC---CCCEEEEEeC-------C
Q 001362          804 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILT---I----MPPSPTATSLAFNPH---DNNVIAIGMD-------D  865 (1092)
Q Consensus       804 ~v~~~~~s~dg~-~l~~~sdg~i~iwd~~~~~~~~~---~----~~~~~~i~~l~~s~~---d~~~lasg~~-------d  865 (1092)
                      ....++|.|+|+ ++++-..|.|++++.. ++....   +    .........++++|+   ++.+.++-+.       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            457899999999 7766667999999854 332211   1    112345689999993   3444443222       2


Q ss_pred             CcEEEEEcCCc-------eee-Eeec-----cccCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEcCCCc
Q 001362          866 STILIYNARSS-------EVI-SKLE-----GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWG  919 (1092)
Q Consensus       866 g~v~iwd~~~~-------~~~-~~l~-----~h~~~V~~l~~spdg~~l~s~s~D-------------g~i~iwd~~~~~  919 (1092)
                      ..|..|++..+       +.+ ..+.     .|.  ...|+|.|||.++++.+..             |.|.-.+.+.. 
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~-  174 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE-  174 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC-
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC-
Confidence            35666666432       111 1222     132  3569999999777776542             34555555431 


Q ss_pred             ee-----------eeeeeecCCCCcCCCCCceEEEEec-CCCEEEEE--eCCcEEEEEcCCceee---------------
Q 001362          920 IQ-----------TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEELTCL---------------  970 (1092)
Q Consensus       920 ~~-----------~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~~--~d~~i~lwd~~~~~~~---------------  970 (1092)
                      ..           ......  .++.    ....++|.| +|++.++-  .++.=.|.-+..+...               
T Consensus       175 ~p~~npf~~~~~~~~~i~a--~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~  248 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWS--YGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFK  248 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEE--ECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSC
T ss_pred             CCCCCCCcCCCCCCccEEE--EcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCc
Confidence            00           000111  1111    367899999 67666662  2222222222111110               


Q ss_pred             --------------eeeccCCCCCEEEEEEec-------CCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccC
Q 001362          971 --------------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCL 1029 (1092)
Q Consensus       971 --------------~~~~~~h~~~v~~l~fs~-------dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1092)
                                    ..+.-.+...+..++|..       +|.++++.-..+.|...++..++.......   +.    ..
T Consensus       249 ~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~---~~----~~  321 (353)
T 2g8s_A          249 IPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI---LT----DR  321 (353)
T ss_dssp             CTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE---SG----GG
T ss_pred             cCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc---cc----CC
Confidence                          000001234677888863       577777766778888888876654433221   11    01


Q ss_pred             cccceEEEECCCCCCEEEEEe-CCCcEEEEeC
Q 001362         1030 HVYPHAIAAHPLKPTQFAVGL-TNGEVYVIEP 1060 (1092)
Q Consensus      1030 ~v~~~~~~~~p~~~~~l~~~~-~dg~v~~w~~ 1060 (1092)
                      .-++..+++.| |+.++++.. .+|  +||.+
T Consensus       322 ~~rp~~v~~~p-dG~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          322 GQRIRDVRTGP-DGYLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             CCCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred             CCceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence            12467889999 567555443 344  45554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.24  E-value=0.18  Score=52.62  Aligned_cols=170  Identities=7%  Similarity=0.021  Sum_probs=108.9

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE---CCCC
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW---SPDG  408 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~---spdg  408 (1092)
                      ...---.+++|.+....++++.-..++|..||...+..... .++  ++..         -......+..+.|   .|++
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~--~~s~---------~g~~~~~~sGl~~~~~D~~g   77 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID--GASS---------NGDGEQQMSGLSLLTHDNSK   77 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT--TTCC---------SSCCSEEEEEEEESSSSSCC
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC--Cccc---------cCCCcceeeEEEEeccCCCC
Confidence            33334567899886655667666789999999986654432 110  0000         0001124578999   6888


Q ss_pred             CEEEEEe-------------CCCEEEEEEcc---CCCcccceEEEcccc-----------cceeEEEEecCCCcEEEEEE
Q 001362          409 SLLGVAY-------------SKHIVQLYAYH---GGSDARQQLEIDAHV-----------GNVNDLAFSAPCKQISVITC  461 (1092)
Q Consensus       409 ~~las~~-------------~d~~i~iwd~~---~~~~~~~~~~~~~h~-----------~~v~~~~~s~d~~~l~l~s~  461 (1092)
                      +++++..             .+..|..+|+.   +++.+... .+....           .....++..++|+  ..+++
T Consensus        78 rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~  154 (334)
T 2p9w_A           78 RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAF  154 (334)
T ss_dssp             EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEE
T ss_pred             cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeC
Confidence            8888644             25779999999   77655422 333222           2488999999999  78888


Q ss_pred             eCC-CcEEEEECCCCceeEEEecC------CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC
Q 001362          462 GDD-KTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL  519 (1092)
Q Consensus       462 ~~d-~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  519 (1092)
                      +.- +.|...+.+.. .+..+...      ....+.|+++|  ++.+|+.....|.+..+|+...
T Consensus       155 s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          155 ALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred             CCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence            877 88877775533 33333211      11255778854  6677877777999999998853

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.24  E-value=0.042  Score=58.87  Aligned_cols=207  Identities=10%  Similarity=0.039  Sum_probs=114.7

Q ss_pred             cEEEEEECCCCCEEEEEe------------CCCEEEEEEccCCCc-ccceEEEcc-----cccceeEEEEec--CCCcEE
Q 001362          398 SVNRVVWSPDGSLLGVAY------------SKHIVQLYAYHGGSD-ARQQLEIDA-----HVGNVNDLAFSA--PCKQIS  457 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~~------------~d~~i~iwd~~~~~~-~~~~~~~~~-----h~~~v~~~~~s~--d~~~l~  457 (1092)
                      ..-.++..|+|..+++++            .+|.|.++|..+... ...+ .+.+     .......+.+.+  ++...+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            344566788886666652            688999999974321 2222 2333     234566777766  454323


Q ss_pred             EEEEeC--CCcEEEEECCCCc-e---eEEEecC-CcCeEEEeecccCCccEEEEEec-----------------CCeEEE
Q 001362          458 VITCGD--DKTIKVWDAVTGS-R---TYSFEGH-GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKA  513 (1092)
Q Consensus       458 l~s~~~--d~~i~vwd~~~~~-~---~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~v  513 (1092)
                      +++-..  +.+|.+|+++.+. .   +.++.+. -...+.+.+.  ++|.+.++...                 .|.|..
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            333333  5678888766532 2   2333332 2346677774  35666666531                 234444


Q ss_pred             EEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeE--EEEEeeccccCCceEEEEEcC-C
Q 001362          514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI--KRTYQGLQLQHNSVSVVHFDT-A  589 (1092)
Q Consensus       514 wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~--~~~~~~~~~~~~~v~~~~~~p-~  589 (1092)
                      +|  ..+.. .....-...+.++|+||++.++.+..   ....|+.|++. .++.  .+.+ ..   .+....+++.+ +
T Consensus       208 ~d--~~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~-~~---~g~PDGi~vD~e~  277 (355)
T 3sre_A          208 YS--PNDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVL-SF---DTLVDNISVDPVT  277 (355)
T ss_dssp             EC--TTCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEE-EC---SSEEEEEEECTTT
T ss_pred             EE--CCeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEE-eC---CCCCceEEEeCCC
Confidence            44  33322 22222234678999999999888754   24578888875 3333  2233 11   25678889999 5


Q ss_pred             CCEEEEEeCC-CcEEEEECC--CCceEEEEe
Q 001362          590 KDQILAAGDD-HVIKIWDMN--KVQLLTTID  617 (1092)
Q Consensus       590 ~~~l~~~s~d-g~i~iwd~~--~~~~~~~~~  617 (1092)
                      |+..+++..+ +.|..|+..  .+..+..+.
T Consensus       278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence            8877766533 344445544  244444444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.22  E-value=0.11  Score=56.18  Aligned_cols=108  Identities=15%  Similarity=0.162  Sum_probs=63.1

Q ss_pred             CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC---CCE
Q 001362          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSL  410 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~  410 (1092)
                      -...+.++|.|||+ ++++ ..+|.|.+++  +++......++              +..........++|+||   +.+
T Consensus        30 l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~~~~--------------v~~~g~~~p~gia~~pdf~~~g~   91 (352)
T 2ism_A           30 LEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYAELS--------------VYHRGESGLLGLALHPRFPQEPY   91 (352)
T ss_dssp             CSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEEECC--------------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred             CCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEeecce--------------EeecCCCCceeEEECCCCCCCCE
Confidence            34678999999998 5555 4558999998  44321110000              12223457889999998   566


Q ss_pred             EEEEeC-C-----CEEEEEEccCCCcc--cceE-EEc---ccccceeEEEEecCCCcEEEEEE
Q 001362          411 LGVAYS-K-----HIVQLYAYHGGSDA--RQQL-EID---AHVGNVNDLAFSAPCKQISVITC  461 (1092)
Q Consensus       411 las~~~-d-----~~i~iwd~~~~~~~--~~~~-~~~---~h~~~v~~~~~s~d~~~l~l~s~  461 (1092)
                      |.++.. .     +.|..|+...+..-  +.+. .+.   +.......++|.|||.  ++++.
T Consensus        92 lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~  152 (352)
T 2ism_A           92 VYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT  152 (352)
T ss_dssp             EEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred             EEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence            655543 2     56888888754211  1111 122   1111346899999996  45543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.17  E-value=0.31  Score=52.67  Aligned_cols=233  Identities=17%  Similarity=0.137  Sum_probs=118.8

Q ss_pred             CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC---CCE
Q 001362          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSL  410 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~  410 (1092)
                      -...+.++|.|||+ ++++ ..+|.|.+++ .+|+ .....++              +..........|+|+|+   +..
T Consensus        28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g~   89 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKSW   89 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred             CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCCE
Confidence            34789999999997 5555 4559999887 3444 1110100              11223456889999998   555


Q ss_pred             EEEEeC----C----CEEEEEEccCCC-ccc---ce-EEEc-ccccceeEEEEecCCCcEEEEEEeC-------------
Q 001362          411 LGVAYS----K----HIVQLYAYHGGS-DAR---QQ-LEID-AHVGNVNDLAFSAPCKQISVITCGD-------------  463 (1092)
Q Consensus       411 las~~~----d----~~i~iwd~~~~~-~~~---~~-~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~-------------  463 (1092)
                      |.++..    +    ..|..|+...+. .+.   .+ ..+. +.......++|.|||.  ++++.+.             
T Consensus        90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~  167 (354)
T 3a9g_A           90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL  167 (354)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred             EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence            555433    2    567788876541 111   11 0121 1111346799999997  4555332             


Q ss_pred             CCcEEEEECCCC---------ceeEEEecCCcCeEEEeecccCCccEEEEEecCC---eEEEEEcCCCC-----------
Q 001362          464 DKTIKVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLG-----------  520 (1092)
Q Consensus       464 d~~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~-----------  520 (1092)
                      .+.|.-.+.+..         ..+.. .++.. ...++|.+. ++.++++-....   .|.+.  ..+.           
T Consensus       168 ~G~I~ri~~dG~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~  242 (354)
T 3a9g_A          168 AGKILRVDEEGRPPADNPFPNSPIWS-YGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKA  242 (354)
T ss_dssp             SSEEEEECTTSCCCTTSSSTTCCEEE-ECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCC
T ss_pred             CeEEEEEcCCCCCCCCCCCCCCcEEE-EccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCC
Confidence            245555554321         11221 23433 345777542 344444432222   13222  1111           


Q ss_pred             -------ceEEecCCCCceEEEEEc-------cCCCEEEEEecCCCCceeEEEEeCCCC-eEE--EEEeeccccCCceEE
Q 001362          521 -------ARVDYDAPGLGCTRMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEG-AIK--RTYQGLQLQHNSVSV  583 (1092)
Q Consensus       521 -------~~~~~~~~~~~i~~~~~s-------~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~~~v~~  583 (1092)
                             ....+.........++|.       .+|+++++...    .+.|...++... +..  ..+...  ....+..
T Consensus       243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~--~~~rp~~  316 (354)
T 3a9g_A          243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKN--VFGRLRD  316 (354)
T ss_dssp             CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTT--TSCCEEE
T ss_pred             CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccC--CCCCeeE
Confidence                   112221223356778883       56765555432    345777776643 322  122111  1256888


Q ss_pred             EEEcCCCCEEEEEe
Q 001362          584 VHFDTAKDQILAAG  597 (1092)
Q Consensus       584 ~~~~p~~~~l~~~s  597 (1092)
                      +++.|||...++..
T Consensus       317 v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          317 VVIDDDGGILISTS  330 (354)
T ss_dssp             EEECTTSCEEEEEC
T ss_pred             EEECCCCcEEEEEe
Confidence            99999986555543

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=97.09  E-value=0.00038  Score=55.56  Aligned_cols=35  Identities=34%  Similarity=0.569  Sum_probs=32.8

Q ss_pred             CCchhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001362            1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFY   35 (1092)
Q Consensus         1 ~~~~~~~~~~li~q~L~~~g~~~s~~~l~~Es~~~   35 (1092)
                      |++...||..||..||+|.||..||-+|+.||+|.
T Consensus         1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~   35 (90)
T 2xtc_A            1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS   35 (90)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence            88999999999999999999999999999999985

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.08  E-value=0.041  Score=58.45  Aligned_cols=233  Identities=10%  Similarity=0.010  Sum_probs=124.6

Q ss_pred             CEEEEEe---CCeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCC----CcEEEEEcCCcee--eEeec
Q 001362          815 AYLFSAS---GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEV--ISKLE  883 (1092)
Q Consensus       815 ~~l~~~s---dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~v~iwd~~~~~~--~~~l~  883 (1092)
                      .+++.|+   ...+.+||..+.+-..  .+........++.+   ++.+++.|+.+    ..+.+||..+.+-  +..+.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            3444454   2569999998765332  22222222233333   56788888765    5788999988642  22332


Q ss_pred             cccCCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-e-
Q 001362          884 GHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-  955 (1092)
Q Consensus       884 ~h~~~V~~l~~spdg~~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-  955 (1092)
                      .....-..+.+  ++++++.|+.+      ..+.+||..+.+......+..  ..      ....+..-++++++.+ . 
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r------~~~~~~~~~~~iyv~GG~~  159 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT--QR------CSHGMVEANGLIYVCGGSL  159 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS--CC------BSCEEEEETTEEEEECCEE
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC--Cc------ceeEEEEECCEEEEECCCC
Confidence            21222222222  67788888765      458899998866433222111  11      1112223466666663 2 


Q ss_pred             --------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCceEEeecccccc
Q 001362          956 --------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYL 1022 (1092)
Q Consensus       956 --------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~ 1022 (1092)
                              -..+.+||..+.+-...-... .......+..-++++++.|+.+     ..+.+||+.+.+....    ...
T Consensus       160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~  234 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPATETWTELCPMI-EARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV----SPM  234 (306)
T ss_dssp             SCTTTCEECCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC----CCC
T ss_pred             CCCCcccccceEEEeCCCCCeEEECCCcc-chhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC----CCC
Confidence                    345889999877543321111 1111112223377778877754     3588999988754422    122


Q ss_pred             CCCCccCcccceEEEECCCCCCEEEEEeCC-----CcEEEEeCCCCCCccccCCCCC
Q 001362         1023 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus      1023 ~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d-----g~v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
                      +..     ....+++..  ++.+++.|+.+     ..+.+||+  ...+|...++..
T Consensus       235 p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~  282 (306)
T 3ii7_A          235 PWK-----GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT--ETDKWVANSKVR  282 (306)
T ss_dssp             SCC-----BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET--TTTEEEEEEEEE
T ss_pred             CCC-----ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC--CCCeEEeCCCcc
Confidence            221     111222222  36788888865     46777887  445688765443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.08  E-value=0.03  Score=59.32  Aligned_cols=234  Identities=13%  Similarity=0.083  Sum_probs=123.9

Q ss_pred             CCCEEEEEe-C------CeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCC-----CcEEEEEcCCce-
Q 001362          813 NDAYLFSAS-G------GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARSSE-  877 (1092)
Q Consensus       813 dg~~l~~~s-d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~~-  877 (1092)
                      ++.+++.|+ .      ..+.+||..+.+-..  .+.........+.  . ++.+++.|+.+     ..+.+||..+.+ 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--L-HDRIYVIGGYDGRSRLSSVECLDYTADED   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--E-TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--E-CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence            445555554 1      358899988765322  2221111222222  2 56788888765     368999988765 


Q ss_pred             ----eeEeeccccCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCC
Q 001362          878 ----VISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  948 (1092)
Q Consensus       878 ----~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg  948 (1092)
                          .+..+......-..+.+  ++++++.|+.++     .+.+||..+.+......+.  ...      ....+..-++
T Consensus        91 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r------~~~~~~~~~~  160 (301)
T 2vpj_A           91 GVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ--TAR------EGAGLVVASG  160 (301)
T ss_dssp             CCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS--SCC------BSCEEEEETT
T ss_pred             CeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC--CCc------ccceEEEECC
Confidence                22222222222222222  677788777543     5888998886644432221  111      1122223367


Q ss_pred             CEEEEE-eC-----CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCceEEeec
Q 001362          949 TRFLLV-HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       949 ~~la~~-~d-----~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~ 1017 (1092)
                      ++++.| .+     ..+.+||..+.+-...-.... ......+...+++.++.|+.+     ..+.+||+.+.+....- 
T Consensus       161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~-  238 (301)
T 2vpj_A          161 VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT-  238 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC-
T ss_pred             EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC-
Confidence            766663 32     469999988775443211111 111112223377788888764     46899999887654221 


Q ss_pred             cccccCCCCccCcccceEEEECCCCCCEEEEEeCCC-----cEEEEeCCCCCCccccCCCC
Q 001362         1018 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPPD 1073 (1092)
Q Consensus      1018 ~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~~~ 1073 (1092)
                         ..+..     ....+++..  ++..++.|+.++     .|.+||+.  ..+|...++.
T Consensus       239 ---~~p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~  287 (301)
T 2vpj_A          239 ---SMTTP-----RCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPI--IDSWEVVTSM  287 (301)
T ss_dssp             ---CCSSC-----CBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETT--TTEEEEEEEE
T ss_pred             ---CCCCc-----ccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCC--CCeEEEcCCC
Confidence               12221     111122222  357888887663     56777774  4568776543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.06  E-value=0.029  Score=60.26  Aligned_cols=110  Identities=13%  Similarity=0.111  Sum_probs=82.5

Q ss_pred             EEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCC----CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee----
Q 001362          807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----  878 (1092)
Q Consensus       807 ~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~----  878 (1092)
                      ......+|.-++.+.++.||.-++......+.+...    -..|..+..+| +|++||..+ +..|.|-.+..+..    
T Consensus        25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~  102 (452)
T 3pbp_A           25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED  102 (452)
T ss_dssp             EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred             EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence            445667889999999999999998855455555443    23688999999 899999876 55799988873321    


Q ss_pred             --------eEeecc------ccCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCCC
Q 001362          879 --------ISKLEG------HSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGW  918 (1092)
Q Consensus       879 --------~~~l~~------h~~~V~~l~~spd---g~~l~s~s~Dg~i~iwd~~~~  918 (1092)
                              ...+.-      ...+|..+.|+|-   +..|++-..|++|++||+...
T Consensus       103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred             cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence                    112221      2567999999995   468999999999999999863

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.03  E-value=0.5  Score=50.77  Aligned_cols=259  Identities=11%  Similarity=0.079  Sum_probs=150.2

Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001362          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  633 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1092)
                      ...|.+.|+.++..+....-      ...+.-.+|..+.++.-. ..++.|||+++.+.+........   |.--.|-.+
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~---VvfWkWis~  116 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWISL  116 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEEEEET
T ss_pred             CCeEEEEECCCCCcceeccc------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC---ceEEEecCC
Confidence            44788899887665432221      223455788887666654 68999999999999998876543   555566543


Q ss_pred             CCEEEEEeCCCeEEEEECCCC-ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001362          634 GTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1092)
Q Consensus       634 ~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l  712 (1092)
                       +.|+..+. ..|+-|++... .+...+..|..-                                              
T Consensus       117 -~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L----------------------------------------------  148 (494)
T 1bpo_A          117 -NTVALVTD-NAVYHWSMEGESQPVKMFDRHSSL----------------------------------------------  148 (494)
T ss_dssp             -TEEEEECS-SEEEEEESSSSCCCEEEEECCGGG----------------------------------------------
T ss_pred             -CeEEEEcC-CeeEEecccCCCCchhheecchhc----------------------------------------------
Confidence             34555544 58999998642 222222111100                                              


Q ss_pred             eccccccCccccccccCCccccccEEEEEEecCCcEEEEeec-------CCeeEEEeecCCCcCcCcccccccCCccccC
Q 001362          713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-------NGVHLMWRWPRNDLTLSTEATTKVPPRLYQP  785 (1092)
Q Consensus       713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~  785 (1092)
                                          ....|-....+++.++++..+-       .|.+.+|..+....                 
T Consensus       149 --------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-----------------  191 (494)
T 1bpo_A          149 --------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-----------------  191 (494)
T ss_dssp             --------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-----------------
T ss_pred             --------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-----------------
Confidence                                1233444555666666554332       25566666543211                 


Q ss_pred             CCCCceeeecCCCCCCCCCeeEEEEecC---CCEEEEEe----CCeEEEEEcCCc---------eeeEEecC---CCCCe
Q 001362          786 RHGPQFMVNDTTDSNSQEAVPCFALSKN---DAYLFSAS----GGVISLYIVMTF---------KTILTIMP---PSPTA  846 (1092)
Q Consensus       786 ~~g~~~~~~~l~~~~~~~~v~~~~~s~d---g~~l~~~s----dg~i~iwd~~~~---------~~~~~~~~---~~~~i  846 (1092)
                           ..   +.  +|......+.+..+   ..+++.+.    .++++|.++...         +.+..+-.   ..+--
T Consensus       192 -----Q~---ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFP  261 (494)
T 1bpo_A          192 -----QP---IE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP  261 (494)
T ss_dssp             -----EE---EC--CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCE
T ss_pred             -----ch---he--eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCce
Confidence                 00   00  12222211111111   12333332    378999988532         11111111   23455


Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001362          847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW  918 (1092)
Q Consensus       847 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~  918 (1092)
                      .++..|+ .-.++..-+.-|.+++||+.++.++..-+-....|...+...+..=++.....|.|.--.++..
T Consensus       262 vamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          262 VAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             eEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            7888998 6678889999999999999999998777766677766666655555555667777766666553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.00  E-value=0.039  Score=58.45  Aligned_cols=236  Identities=11%  Similarity=-0.002  Sum_probs=119.5

Q ss_pred             CCCEEEEEe-CC-----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-----CcEEEEECCCC
Q 001362          407 DGSLLGVAY-SK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG  475 (1092)
Q Consensus       407 dg~~las~~-~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~  475 (1092)
                      ++..++.|+ .+     ..+.+||..+++-.. ...+...  .....+...+++  +++.|+.+     ..+.+||+.++
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~--r~~~~~~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~   88 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRK--RRYVASVSLHDR--IYVIGGYDGRSRLSSVECLDYTAD   88 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSC--CBSCEEEEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChh--hccccEEEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence            455666666 32     358889988754211 1011111  111122223555  66667654     46899998887


Q ss_pred             c---eeEE--EecCCcCeEEEeecccCCccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001362          476 S---RTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       476 ~---~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      +   -...  +.........+.+    ++.+++.|+.++     .+.+||..+.+-...-..........+...+++.++
T Consensus        89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv  164 (301)
T 2vpj_A           89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC  164 (301)
T ss_dssp             TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred             CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence            6   3222  1111111111222    456777776543     577888766543322211111111122223677777


Q ss_pred             EEecCCC-CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeCC
Q 001362          546 SCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       546 ~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~  619 (1092)
                      .++.++. ....+.+||+.+.+-...-.... .......+.+  ++..++.|+.+     ..+.+||+.+.+....-...
T Consensus       165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  241 (301)
T 2vpj_A          165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT  241 (301)
T ss_dssp             ECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred             ECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence            7665332 13458999998876544321111 1112222222  45566666643     46899999988765543322


Q ss_pred             CCCCCCceEEEccCCCEEEEEeCC-----CeEEEEECCCCce
Q 001362          620 GGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESNS  656 (1092)
Q Consensus       620 ~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~  656 (1092)
                      ..  .....+..-++++++.|+.+     ..+.+||..+.+.
T Consensus       242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence            21  12222233367777777765     4577888877643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.97  E-value=0.085  Score=55.84  Aligned_cols=222  Identities=10%  Similarity=0.046  Sum_probs=117.2

Q ss_pred             CeEEEEEcCCceeeEE--ecCCCCCeEEEEEcCCCCCEEEEEeCCC-----cEEEEEcCCcee--eEeeccccCCeEEEE
Q 001362          823 GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEV--ISKLEGHSKRVTGLV  893 (1092)
Q Consensus       823 g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~--~~~l~~h~~~V~~l~  893 (1092)
                      ..+..||..+.+-...  +......-..+.+   ++.+++.|+.++     .+.+||..+.+-  +..+......-..+.
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  106 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM---AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV  106 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEE---CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE
Confidence            4588899887653222  2211111222222   567888887553     688999887642  222222112222222


Q ss_pred             EcCCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-e-------CCcEE
Q 001362          894 FSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-------ETHLA  960 (1092)
Q Consensus       894 ~spdg~~l~s~s~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-------d~~i~  960 (1092)
                      +  ++++++.|+.++     .+.+||+.+.+......+..  ...     -.++ ..-++++++.| .       -..+.
T Consensus       107 ~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~-----~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~  176 (302)
T 2xn4_A          107 L--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT--RRS-----SVGV-GVVGGLLYAVGGYDVASRQCLSTVE  176 (302)
T ss_dssp             E--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS--CCB-----SCEE-EEETTEEEEECCEETTTTEECCCEE
T ss_pred             E--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC--ccc-----CceE-EEECCEEEEEeCCCCCCCccccEEE
Confidence            2  677888887654     47788888766433221111  111     1122 22366666663 2       23588


Q ss_pred             EEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCceEEeeccccccCCCCccCcccceE
Q 001362          961 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035 (1092)
Q Consensus       961 lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1035 (1092)
                      +||..+.+-...-.......-.+ +...++++++.|+.+     ..+.+||+.+.+....-    ..+..     ....+
T Consensus       177 ~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~~~~-----r~~~~  246 (302)
T 2xn4_A          177 CYNATTNEWTYIAEMSTRRSGAG-VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA----DMNMC-----RRNAG  246 (302)
T ss_dssp             EEETTTTEEEEECCCSSCCBSCE-EEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC----CCSSC-----CBSCE
T ss_pred             EEeCCCCcEEECCCCcccccccc-EEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCC----CCCCc-----cccCe
Confidence            99998765433211111111112 223377888888765     36889999887554221    12211     11112


Q ss_pred             EEECCCCCCEEEEEeCCC-----cEEEEeCCCCCCccccCC
Q 001362         1036 IAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLP 1071 (1092)
Q Consensus      1036 ~~~~p~~~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~ 1071 (1092)
                      ++..  ++..++.|+.++     .+.+||+.  ..+|...+
T Consensus       247 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~  283 (302)
T 2xn4_A          247 VCAV--NGLLYVVGGDDGSCNLASVEYYNPT--TDKWTVVS  283 (302)
T ss_dssp             EEEE--TTEEEEECCBCSSSBCCCEEEEETT--TTEEEECS
T ss_pred             EEEE--CCEEEEECCcCCCcccccEEEEcCC--CCeEEECC
Confidence            2222  367888888664     47888884  45698775

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.92  E-value=0.75  Score=51.06  Aligned_cols=113  Identities=16%  Similarity=0.118  Sum_probs=77.4

Q ss_pred             CeeEEEEecCCCEEEEEe--CCeEEEEEcCCcee-------------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 001362          804 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT-------------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI  868 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~-------------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v  868 (1092)
                      ..-.+.++|||+++++++  +.++.++|+.....             ..... -.......+|.+ +|....+..-|..|
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv  401 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV  401 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence            345688999999999998  68899999874211             11121 234567899999 78666677789999


Q ss_pred             EEEEcCCc----------eeeEeeccccCCeEEEEE------cCCCCEEEEEe---CCCcE----------EEEEcCCCc
Q 001362          869 LIYNARSS----------EVISKLEGHSKRVTGLVF------SDALNILVSSG---GDAQI----------FVWDVDGWG  919 (1092)
Q Consensus       869 ~iwd~~~~----------~~~~~l~~h~~~V~~l~~------spdg~~l~s~s---~Dg~i----------~iwd~~~~~  919 (1092)
                      .-|++...          ..+.++.-|-.+- .+.-      .|||++|++..   .|+-+          .+.|+...+
T Consensus       402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk  480 (638)
T 3sbq_A          402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE  480 (638)
T ss_dssp             EEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred             EEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence            99999764          4566666554432 2222      57999999874   45533          667776544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.86  E-value=0.073  Score=56.47  Aligned_cols=235  Identities=8%  Similarity=-0.022  Sum_probs=119.0

Q ss_pred             CEEEEEeC--CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC----CcEEEEECCCCceeEEEe
Q 001362          409 SLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       409 ~~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~  482 (1092)
                      .+++.|+.  ...+.+||..+++-.. ...+......-  .+..-++.  +++.|+.+    ..+.+||+.+++-...-.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~--~~~~~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDA--ACVFWDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSC--EEEEETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEec-CCCCCccccee--EEEEECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence            34555554  3468889988754211 10111111111  12223555  66677654    578899988876433221


Q ss_pred             cCC--cCeEEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC-
Q 001362          483 GHG--APVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-  553 (1092)
Q Consensus       483 ~~~--~~v~~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~-  553 (1092)
                      ...  .....+.+    ++.+++.|+.+      ..+.+||..+..-...-..........+...+++.++.++.+... 
T Consensus        88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  163 (306)
T 3ii7_A           88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNV  163 (306)
T ss_dssp             CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTT
T ss_pred             CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCC
Confidence            111  11112222    45677777765      357888877654322211111111112222466777776653332 


Q ss_pred             ----ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeCCCCCCC
Q 001362          554 ----ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPE  624 (1092)
Q Consensus       554 ----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~  624 (1092)
                          ...+.+||+.+.+-...-.... ....-..+.+  ++..++.|+.+     ..+.+||+.+.+....-..+.....
T Consensus       164 ~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~  240 (306)
T 3ii7_A          164 SGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT  240 (306)
T ss_dssp             TCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred             cccccceEEEeCCCCCeEEECCCccc-hhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence                3558899998876543321111 1112222222  45556666533     4688999988765543222221111


Q ss_pred             CceEEEccCCCEEEEEeCC-----CeEEEEECCCCcee
Q 001362          625 NPRICFNKNGTLLAVIANE-----NRIKILETPESNSV  657 (1092)
Q Consensus       625 v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~  657 (1092)
                      ...+.+  ++++++.|+.+     ..+.+||..+.+..
T Consensus       241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             CEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence            222222  67788888753     56888888876443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.86  E-value=0.22  Score=53.81  Aligned_cols=237  Identities=9%  Similarity=-0.014  Sum_probs=117.8

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC--cccceE-EEcccccceeEEEEecC---CCcEEEEEEeC-------
Q 001362          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQL-EIDAHVGNVNDLAFSAP---CKQISVITCGD-------  463 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~-~~~~h~~~v~~~~~s~d---~~~l~l~s~~~-------  463 (1092)
                      .....|+|.|||+.|.++...|.|++++.....  .+.... ...........++|+|+   +.. +.++-..       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCCc
Confidence            457899999999944455677899999854321  011000 01112345688999996   554 3333222       


Q ss_pred             CCcEEEEECCCC--c--eeEE-EecC------CcCeEEEeecccCCccEEEEEec-------------CCeEEEEEcCCC
Q 001362          464 DKTIKVWDAVTG--S--RTYS-FEGH------GAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSL  519 (1092)
Q Consensus       464 d~~i~vwd~~~~--~--~~~~-~~~~------~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~vwd~~~~  519 (1092)
                      ...|..|+...+  .  .... +...      ...-..++|.  +||.+.++.+.             .|.|.-++.+..
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence            235666666533  1  1111 1111      1113457774  46665555433             245666665532


Q ss_pred             C------------ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE--------eCCCC--------------
Q 001362          520 G------------ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW--------NESEG--------------  565 (1092)
Q Consensus       520 ~------------~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw--------d~~~~--------------  565 (1092)
                      -            ....+.........++|.|+...|+++-...++...|.+.        ....+              
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence            0            1111111223567899999433444433221111122221        11000              


Q ss_pred             -------eEEEEEeeccccCCceEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCceEEEEeC-CCCCCCCceEEE
Q 001362          566 -------AIKRTYQGLQLQHNSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-GGGLPENPRICF  630 (1092)
Q Consensus       566 -------~~~~~~~~~~~~~~~v~~~~~~p-------~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~  630 (1092)
                             ..+..+..    ......+.|..       ++.++++.-..+.|...++..++....... ......+..+++
T Consensus       255 ~~~~~~~~P~~~~~~----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~  330 (353)
T 2g8s_A          255 EIVAGTEQPVFYWKD----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRT  330 (353)
T ss_dssp             SSCTTSCCCSEEESS----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEE
T ss_pred             CCCCCccCCeEEeCC----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEE
Confidence                   00001111    12456677753       456666665777788888776554433221 111235788999


Q ss_pred             ccCCCEEEEE
Q 001362          631 NKNGTLLAVI  640 (1092)
Q Consensus       631 s~~~~~l~~~  640 (1092)
                      .|||.++++.
T Consensus       331 ~pdG~lyv~t  340 (353)
T 2g8s_A          331 GPDGYLYVLT  340 (353)
T ss_dssp             CTTSCEEEEE
T ss_pred             CCCCcEEEEE
Confidence            9999866654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.84  E-value=0.13  Score=54.82  Aligned_cols=229  Identities=10%  Similarity=0.072  Sum_probs=120.9

Q ss_pred             eCCeEEEEEcCCceeeE-EecCCCCCeEEEEEcCCCCCEEEEEeC-----C------CcEEEEEcCCcee--eEeecccc
Q 001362          821 SGGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD-----D------STILIYNARSSEV--ISKLEGHS  886 (1092)
Q Consensus       821 sdg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~-----d------g~v~iwd~~~~~~--~~~l~~h~  886 (1092)
                      ++..+.+||..+.+-.. .+..+.......+... ++.+++.|+.     .      ..+.+||..+.+-  +..+....
T Consensus        11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r   89 (315)
T 4asc_A           11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR   89 (315)
T ss_dssp             ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred             cCCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence            34678999998876432 2222223333334444 6778888884     1      1378889887653  22222111


Q ss_pred             CCeEEEEEcCCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-e-C
Q 001362          887 KRVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E  956 (1092)
Q Consensus       887 ~~V~~l~~spdg~~l~s~s~D--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-d  956 (1092)
                      ..-..+.+  ++++++.|+.+        ..+.+||..+.+......+..  .      .....+...++++++.| . +
T Consensus        90 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~------r~~~~~~~~~~~iyv~GG~~~  159 (315)
T 4asc_A           90 CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY--V------VYGHTVLSHMDLVYVIGGKGS  159 (315)
T ss_dssp             ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS--C------CBSCEEEEETTEEEEECCBCT
T ss_pred             hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC--c------ccceeEEEECCEEEEEeCCCC
Confidence            11122222  66777777743        358899998865433221111  1      11222333566666664 3 2


Q ss_pred             -----CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCC-----cEEEEEcCCCceEEeeccccccCCCC
Q 001362          957 -----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQCRILSTAYLRPTT 1026 (1092)
Q Consensus       957 -----~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~ 1026 (1092)
                           +.+.+||..+.+-...-... ..+....+..-+++.++.|+.++     .+.+||+.+.+....-    ..+.. 
T Consensus       160 ~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~-  233 (315)
T 4asc_A          160 DRKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE----AFPQE-  233 (315)
T ss_dssp             TSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC----CCSSC-
T ss_pred             CCcccceEEEEeCCCCeEEECCCCC-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECC----CCCCc-
Confidence                 46999999876543321111 11111122233778888888664     4888999887544221    12221 


Q ss_pred             ccCcccceEEEECCCCCCEEEEEeCCC--------------cEEEEeCCCCCCccccCCCCC
Q 001362         1027 SCLHVYPHAIAAHPLKPTQFAVGLTNG--------------EVYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus      1027 ~~~~v~~~~~~~~p~~~~~l~~~~~dg--------------~v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
                          ....+++..  ++.+++.|+.++              .|.+||+  ...+|...+|..
T Consensus       234 ----r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~  287 (315)
T 4asc_A          234 ----RSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNE--EEKKWEGVLREI  287 (315)
T ss_dssp             ----CBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET--TTTEEEEEESCS
T ss_pred             ----ccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecC--CCChhhhhccCC
Confidence                111122222  357888888643              3566776  455688775544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.81  E-value=0.087  Score=55.75  Aligned_cols=235  Identities=11%  Similarity=0.033  Sum_probs=116.6

Q ss_pred             CCEEEEEeCC----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-----CcEEEEECCCCcee
Q 001362          408 GSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGSRT  478 (1092)
Q Consensus       408 g~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~~~~  478 (1092)
                      +..++.|+.+    ..+..||+.+++-.. ...+...... .+++ .-++.  +++.|+.+     ..+.+||..+.+-.
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~-~~~~-~~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~   90 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCR-AGMV-YMAGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT   90 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBS-CEEE-EETTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCccccc-ceEE-EECCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence            4455555533    347888887753211 1111111111 1122 22555  66667654     35889998877543


Q ss_pred             EEEe--cCCcCeEEEeecccCCccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001362          479 YSFE--GHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       479 ~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      ..-.  ........+.+    ++.+++.|+.++     .+.+||+.+.+-...-..........+..-+++.++.++.+.
T Consensus        91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  166 (302)
T 2xn4_A           91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDV  166 (302)
T ss_dssp             EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred             eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCC
Confidence            2211  11111112222    456777777654     466777765543222111111111112223667777766543


Q ss_pred             CC---ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeCCCCCC
Q 001362          552 EG---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLP  623 (1092)
Q Consensus       552 ~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~  623 (1092)
                      ..   ...+.+||+.+.+-...-.... .......+.+  ++..++.|+.+     ..+.+||..+.+....-.....  
T Consensus       167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--  241 (302)
T 2xn4_A          167 ASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC--  241 (302)
T ss_dssp             TTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred             CCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence            32   3458899998876544321111 1122222222  45666666643     4689999988766544322211  


Q ss_pred             CCceEEEccCCCEEEEEeCCC-----eEEEEECCCCce
Q 001362          624 ENPRICFNKNGTLLAVIANEN-----RIKILETPESNS  656 (1092)
Q Consensus       624 ~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~  656 (1092)
                      .....+..-++++++.|+.++     .+.+||..+.+.
T Consensus       242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            112222233677778877653     478888887643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.71  E-value=0.086  Score=55.97  Aligned_cols=236  Identities=10%  Similarity=0.047  Sum_probs=123.0

Q ss_pred             ecCCCEEEEEe-----CCeEEEEEcCCceeeEE--ecCCCCCeEEEEEcCCCCCEEEEEeC----C-----CcEEEEEcC
Q 001362          811 SKNDAYLFSAS-----GGVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMD----D-----STILIYNAR  874 (1092)
Q Consensus       811 s~dg~~l~~~s-----dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~----d-----g~v~iwd~~  874 (1092)
                      .-++.+++.|+     -..+.+||..+.+-...  +....... +++..  ++.+++.|+.    +     ..+.+||..
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~   98 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM   98 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence            34566666665     14589999887653322  22111122 22222  5677777775    2     368899988


Q ss_pred             Ccee--eEeeccccCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC
Q 001362          875 SSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1092)
Q Consensus       875 ~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  947 (1092)
                      +.+-  +..+......-..+.+  ++++++.|+.+     ..+.+||..+.+......+.  ....     -.+++ .-+
T Consensus        99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~-----~~~~~-~~~  168 (308)
T 1zgk_A           99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML--TRRI-----GVGVA-VLN  168 (308)
T ss_dssp             TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS--SCCB-----SCEEE-EET
T ss_pred             CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC--cccc-----ceEEE-EEC
Confidence            7642  2222211122222333  67777777644     35888999886543322111  1111     11222 226


Q ss_pred             CCEEEEE-eC-----CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCceEEee
Q 001362          948 QTRFLLV-HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       948 g~~la~~-~d-----~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~ 1016 (1092)
                      +++++.| .+     +.+.+||..+.+-...-.......-.+++ .-++++++.|+.+     ..+.+||+.+.+.... 
T Consensus       169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-  246 (308)
T 1zgk_A          169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV-  246 (308)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-
T ss_pred             CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEE-EECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC-
Confidence            6666663 22     46899998876543221111111111122 2377788888765     4689999988754421 


Q ss_pred             ccccccCCCCccCcccceEEEECCCCCCEEEEEeCC-----CcEEEEeCCCCCCccccCCCC
Q 001362         1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPPD 1073 (1092)
Q Consensus      1017 ~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d-----g~v~~w~~~~~~~~~~~~~~~ 1073 (1092)
                         ...+..     ....+++..  ++.+++.|+.+     ..+.+||+.  ..+|...++.
T Consensus       247 ---~~~p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~  296 (308)
T 1zgk_A          247 ---APMKHR-----RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPD--TDTWSEVTRM  296 (308)
T ss_dssp             ---CCCSSC-----CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT--TTEEEEEEEC
T ss_pred             ---CCCCCC-----ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCC--CCEEeecCCC
Confidence               112221     111222222  36788888765     356788874  4568776443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.66  E-value=0.89  Score=48.32  Aligned_cols=99  Identities=11%  Similarity=0.125  Sum_probs=58.5

Q ss_pred             eeEEEEecCCCEEEEEe--CCeEEEEEcCCcee------------------eEEecCCCCCeEEEEEcCCCCCEEEEEeC
Q 001362          805 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------------ILTIMPPSPTATSLAFNPHDNNVIAIGMD  864 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~------------------~~~~~~~~~~i~~l~~s~~d~~~lasg~~  864 (1092)
                      ...++|.|+|.+.++-.  ++.-.|--+..+..                  +..+..+......++|..  +.++.....
T Consensus       204 p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l~  281 (347)
T 3das_A          204 VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGLR  281 (347)
T ss_dssp             CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEEST
T ss_pred             cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeecccc
Confidence            45789999887766553  22222322222221                  122222223556788874  556666666


Q ss_pred             CCcEEEEEcCCcee----eEeeccccCCeEEEEEcCCCCEEEEEe
Q 001362          865 DSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSG  905 (1092)
Q Consensus       865 dg~v~iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~l~s~s  905 (1092)
                      .+.|....+..+..    ...+.+..+.+..|+..|||.++++.+
T Consensus       282 ~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          282 GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            66777777765432    233445557899999999998877654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.63  E-value=0.17  Score=53.78  Aligned_cols=232  Identities=9%  Similarity=-0.029  Sum_probs=115.2

Q ss_pred             EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-----C------CcEEEEECCCCceeE
Q 001362          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D------KTIKVWDAVTGSRTY  479 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-----d------~~i~vwd~~~~~~~~  479 (1092)
                      ++.|+  ..+.+||..+++-..  ..+..........+...+++  +++.|+.     .      ..+.+||..+++-..
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~   81 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG   81 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred             EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence            34444  468899998865221  22222222233333444666  5666663     1      127788988876422


Q ss_pred             EEecCCcCeE--EEeecccCCccEEEEEecC--------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001362          480 SFEGHGAPVY--SLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       480 ~~~~~~~~v~--~~~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                       +.....+-.  +++.  . ++.+++.|+.+        ..+.+||..+.+-...-..+.......+...+++.++.++.
T Consensus        82 -~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~  157 (315)
T 4asc_A           82 -MPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK  157 (315)
T ss_dssp             -CCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred             -CCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence             111111111  1111  1 44666776642        34778887765422211111111212223356666667664


Q ss_pred             CC--CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEeCCCCC
Q 001362          550 SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGL  622 (1092)
Q Consensus       550 ~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~~~  622 (1092)
                      ..  .....+.+||+.+.+-...-.... ......++.+  ++..++.|+.++     .+.+||+.+.+....-..... 
T Consensus       158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-  233 (315)
T 4asc_A          158 GSDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-  233 (315)
T ss_dssp             CTTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-
T ss_pred             CCCCcccceEEEEeCCCCeEEECCCCCC-chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence            21  123458999998876543221111 1112222222  556666776544     588899988766554332222 


Q ss_pred             CCCceEEEccCCCEEEEEeCC--------------CeEEEEECCCCcee
Q 001362          623 PENPRICFNKNGTLLAVIANE--------------NRIKILETPESNSV  657 (1092)
Q Consensus       623 ~~v~~v~~s~~~~~l~~~~~d--------------g~i~iw~~~~~~~~  657 (1092)
                       .....+..-++++++.|+.+              ..+.+||..+.+..
T Consensus       234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  281 (315)
T 4asc_A          234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE  281 (315)
T ss_dssp             -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred             -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence             12222223367777777753              24677888776443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.56  E-value=0.48  Score=50.66  Aligned_cols=192  Identities=11%  Similarity=0.037  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCCEEEEE------------eCCCcEEEEEcCC--ceee-Eeecc-----ccCCeEEEEEcC--CCC-EEE
Q 001362          846 ATSLAFNPHDNNVIAIG------------MDDSTILIYNARS--SEVI-SKLEG-----HSKRVTGLVFSD--ALN-ILV  902 (1092)
Q Consensus       846 i~~l~~s~~d~~~lasg------------~~dg~v~iwd~~~--~~~~-~~l~~-----h~~~V~~l~~sp--dg~-~l~  902 (1092)
                      .-.+++.| +|..+++.            ..+|.|.++|..+  ++.. -.+.+     .......+.+.+  ++. +|.
T Consensus        52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34556667 55443333            2689999999874  2211 11222     234667777765  454 344


Q ss_pred             EE-eC--CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe----C------------CcEEEEE
Q 001362          903 SS-GG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----E------------THLAIYE  963 (1092)
Q Consensus       903 s~-s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~----d------------~~i~lwd  963 (1092)
                      .+ ..  +.+|.+|+++..... ...+....+...  .....+++.++|++.++..    |            ..=.+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~~g~~~--~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKLL--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTE-EEEEEEECCTTC--SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEECCCCCCeEEEEEEECCCCE-EEEEeccccCCC--CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            44 22  567888888764322 233444444322  3678999999999888742    1            1233444


Q ss_pred             cCCceeeeeeccCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEEcCC-CceEEeeccccccCCCCccCcccceEEEECCC
Q 001362          964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL 1041 (1092)
Q Consensus       964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~ 1041 (1092)
                      +..++. .... ..-.....++|||||+.|+.+. ..+.|..|++.. |.+... ... ..+       -.+=-++.+++
T Consensus       208 ~d~~~~-~~~~-~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~-~~~-~~~-------g~PDGi~vD~e  276 (355)
T 3sre_A          208 YSPNDV-RVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPL-RVL-SFD-------TLVDNISVDPV  276 (355)
T ss_dssp             ECTTCC-EEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE-EEE-ECS-------SEEEEEEECTT
T ss_pred             EECCeE-EEee-cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecC-EEE-eCC-------CCCceEEEeCC
Confidence            433332 2212 2234678899999998877665 467899999864 433211 111 111       12334667762


Q ss_pred             CCCEEEEEeCC
Q 001362         1042 KPTQFAVGLTN 1052 (1092)
Q Consensus      1042 ~~~~l~~~~~d 1052 (1092)
                      +|++.+++..+
T Consensus       277 ~G~lwva~~~~  287 (355)
T 3sre_A          277 TGDLWVGCHPN  287 (355)
T ss_dssp             TCCEEEEEESC
T ss_pred             CCcEEEEecCC
Confidence            36777766544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.33  E-value=0.034  Score=53.82  Aligned_cols=143  Identities=7%  Similarity=-0.056  Sum_probs=80.2

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCcee-----eEeeccc--cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee----e
Q 001362          855 DNNVIAIGMDDSTILIYNARSSEV-----ISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT----C  923 (1092)
Q Consensus       855 d~~~lasg~~dg~v~iwd~~~~~~-----~~~l~~h--~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~----~  923 (1092)
                      ...+|++..+| +|+.=...++..     ..+..++  =..++.++|+|+|.+.+.  .+|.+.--+..+.....    .
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            34567777777 666554444431     1111122  236789999999987777  66654444433211111    0


Q ss_pred             eeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeecc------CCCCCEEEEEEecCCCEEEEEE
Q 001362          924 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       924 ~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~~  997 (1092)
                      ..+-.. +-.    ....+.|.|+|.+.++ .|+.|+-++-.+.....-+..      .--..+..|.|.|+|.+.+.. 
T Consensus        80 t~IG~~-Gw~----~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-  152 (236)
T 1tl2_A           80 KKIGNG-GWN----QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-  152 (236)
T ss_dssp             EEEECS-CGG----GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred             cEeccc-ccc----cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence            011000 100    1368999999999998 779888777643221110000      112467899999999877665 


Q ss_pred             CCCcEEEEEcC
Q 001362          998 VDGTLSIHEAS 1008 (1092)
Q Consensus       998 ~Dg~i~vwd~~ 1008 (1092)
                       |+.++-+...
T Consensus       153 -dg~lyr~~~P  162 (236)
T 1tl2_A          153 -GQQFYKALPP  162 (236)
T ss_dssp             -TTEEEEECCC
T ss_pred             -CCcEEecCCC
Confidence             7775544333

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.14  E-value=0.18  Score=53.45  Aligned_cols=238  Identities=6%  Similarity=-0.053  Sum_probs=117.4

Q ss_pred             CCCCCEEEEEeCC----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC----C-----CcEEEEE
Q 001362          405 SPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----D-----KTIKVWD  471 (1092)
Q Consensus       405 spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~----d-----~~i~vwd  471 (1092)
                      .-++..++.|+.+    ..+.+||..+++-... ..+......- +++ .-+++  +++.|+.    +     ..+.+||
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~-~~~-~~~~~--lyv~GG~~~~~~~~~~~~~~~~~d   96 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL-ADLQVPRSGL-AGC-VVGGL--LYAVGGRNNSPDGNTDSSALDCYN   96 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEEC-CCCSSCCBSC-EEE-EETTE--EEEECCEEEETTEEEECCCEEEEE
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeEC-CCCCcccccc-eEE-EECCE--EEEECCCcCCCCCCeecceEEEEC
Confidence            3456777777632    3588999887542111 0111111111 122 22555  5666665    2     4688999


Q ss_pred             CCCCceeEE--EecCCcCeEEEeecccCCccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001362          472 AVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL  544 (1092)
Q Consensus       472 ~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  544 (1092)
                      +.+.+-...  +.........+.+    ++.+++.|+.+     ..+.+||..+.+-...-..........+..-+++.+
T Consensus        97 ~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy  172 (308)
T 1zgk_A           97 PMTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLY  172 (308)
T ss_dssp             TTTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred             CCCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEE
Confidence            887753321  1111111112222    45677776644     347778876654222211111111111122266777


Q ss_pred             EEEecCCCC-ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeC
Q 001362          545 FSCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       545 ~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~  618 (1092)
                      +.++.++.. ...+.+||+.+.+-...-.... .......+.+  ++..++.|+.+     ..+.+||+.+.+....-..
T Consensus       173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~  249 (308)
T 1zgk_A          173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM  249 (308)
T ss_dssp             EECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred             EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence            776654322 3458999998776543221111 1122222333  55566666644     5689999988765543322


Q ss_pred             CCCCCCCceEEEccCCCEEEEEeCC-----CeEEEEECCCCce
Q 001362          619 GGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESNS  656 (1092)
Q Consensus       619 ~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~  656 (1092)
                      ...  .....+..-++++++.|+.+     ..+.+||..+.+.
T Consensus       250 p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          250 KHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             SSC--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CCC--ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence            211  11122222367777777643     4577888876643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.07  E-value=0.31  Score=60.63  Aligned_cols=232  Identities=13%  Similarity=0.122  Sum_probs=139.7

Q ss_pred             EEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-ceeeEeeccc
Q 001362          807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH  885 (1092)
Q Consensus       807 ~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h  885 (1092)
                      +.-.+|..+.+|.-.+.++.|+|+++...+..+.- ...|.-=.|-.  .+.|+..+ +..|+-|++.. ..+++.+..|
T Consensus        70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence            45578888888888888999999998877766553 33565556654  34555554 56799999974 3455555545


Q ss_pred             ----cCCeEEEEEcCCCCEEEEEe-------CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEE--ec-CCCEE
Q 001362          886 ----SKRVTGLVFSDALNILVSSG-------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF--HK-DQTRF  951 (1092)
Q Consensus       886 ----~~~V~~l~~spdg~~l~s~s-------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--s~-dg~~l  951 (1092)
                          ...|..-..+++.+|++..|       -.|.+.+|+++.+.      -+..+||..   ....+.+  ++ ...++
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~---~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA---SFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHh---hhheeccCCCCCCceEE
Confidence                45677788899999988654       34788999988643      344555543   1111111  11 12232


Q ss_pred             EEEe----CCcEEEEEcCCc---ee------eeeeccC--CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEee
Q 001362          952 LLVH----ETHLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       952 a~~~----d~~i~lwd~~~~---~~------~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
                      +.+.    .+.++|.++...   ..      +...++.  -..-..++..|+.-..+...+.-|.|.++|+.+|..+.+-
T Consensus       217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence            2232    267888888542   11      1111111  1344456677777677888888999999999999887544


Q ss_pred             ccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001362         1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus      1017 ~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
                      +.        ++..|...  +.+.. ..-++.....|.|.--.+.+
T Consensus       297 ri--------s~~~iF~~--~~~~~-~~g~~~vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          297 RI--------SGETIFVT--APHEA-TAGIIGVNRKGQVLSVCVEE  331 (1630)
T ss_pred             cc--------cCCceEEe--ccCCC-CCceEEEcCCceEEEEEEcc
Confidence            41        12333322  22321 23344444777766555543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.06  E-value=0.11  Score=55.71  Aligned_cols=124  Identities=15%  Similarity=0.177  Sum_probs=79.4

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEE-------eeeeeeecccccceeeEeeecCCCCcEEEEEECCC-
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-------RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-  407 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd-  407 (1092)
                      .|..+..||+|+ +||..+ +.+|.|-.+..+.....       ...+-|.+...        ......+|..+.|+|- 
T Consensus        67 ~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~--------~~~~~s~I~qVlWHPl~  136 (452)
T 3pbp_A           67 DTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE--------EVGPKSSIKKVLFHPKS  136 (452)
T ss_dssp             TTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC--------C--CCCCEEEEEECTTB
T ss_pred             ceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCc--------ccCCCCceeEEEecccc
Confidence            788899999999 455543 36899988874432211       01112222110        0114678999999994 


Q ss_pred             --CCEEEEEeCCCEEEEEEccCCCcccceEEEc---------ccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          408 --GSLLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       408 --g~~las~~~d~~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                        |..|++-..|++|++||+....... . .+.         .....|.+++|.+++-.+++++....|.|+-.-
T Consensus       137 ~~ds~LVVLtsD~~Ir~yDl~~s~~~P-~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          137 YRDSCIVVLKEDDTITMFDILNSQEKP-I-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             GGGCEEEEEETTSCEEEEETTCTTSCC-E-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred             CCCCeEEEEecCCEEEEEEcccCCCCC-c-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence              5689999999999999998633211 1 222         222568888998887766666666677665543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.02  E-value=0.47  Score=51.38  Aligned_cols=239  Identities=12%  Similarity=0.069  Sum_probs=117.3

Q ss_pred             cCCCEEEEEe--CCeEEEEEcCC----ceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeC-C---------CcEEEEEcC
Q 001362          812 KNDAYLFSAS--GGVISLYIVMT----FKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD-D---------STILIYNAR  874 (1092)
Q Consensus       812 ~dg~~l~~~s--dg~i~iwd~~~----~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~-d---------g~v~iwd~~  874 (1092)
                      -++++++.|+  ...+.+||..+    ++.+..+. .......++.+   ++++++.|+. +         ..+.+||..
T Consensus        18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~   94 (357)
T 2uvk_A           18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK   94 (357)
T ss_dssp             ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred             ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence            3677777775  36799999863    33333332 11122223333   5677777776 2         468999998


Q ss_pred             Cceee--Eeec-cccCCeEEEEEcCCCCEEEEEeCC---------------------------------------CcEEE
Q 001362          875 SSEVI--SKLE-GHSKRVTGLVFSDALNILVSSGGD---------------------------------------AQIFV  912 (1092)
Q Consensus       875 ~~~~~--~~l~-~h~~~V~~l~~spdg~~l~s~s~D---------------------------------------g~i~i  912 (1092)
                      +.+-.  ..+. .....-.++.  .++++++.|+.+                                       ..+.+
T Consensus        95 ~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  172 (357)
T 2uvk_A           95 TNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS  172 (357)
T ss_dssp             TTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred             CCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence            76422  2222 1111122222  577888888865                                       46889


Q ss_pred             EEcCCCceeeeeeeecCCCCcCCCCCc-eEEEEecCCCEEEEE-e------CCcEEEEEc--CCceeeeee-ccCCCCCE
Q 001362          913 WDVDGWGIQTCRSLQTPDGVMTLAPSE-THIQFHKDQTRFLLV-H------ETHLAIYEA--EELTCLKQW-FPISSVPI  981 (1092)
Q Consensus       913 wd~~~~~~~~~~~~~~~~~~~~~~~~v-~~l~~s~dg~~la~~-~------d~~i~lwd~--~~~~~~~~~-~~~h~~~v  981 (1092)
                      ||..+.+......+....       .- .+++. -++++++.+ .      ...+..||+  .+.+-.... ........
T Consensus       173 yd~~~~~W~~~~~~p~~~-------~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~  244 (357)
T 2uvk_A          173 FDPSTQQWSYAGESPWYG-------TAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA  244 (357)
T ss_dssp             EETTTTEEEEEEECSSCC-------CBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred             EeCCCCcEEECCCCCCCC-------cccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence            999886644432211111       11 22222 356666653 2      235777876  443322211 11111111


Q ss_pred             EEEEEecCCCEEEEEECC----------------------CcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEEC
Q 001362          982 SQATFSCDCRMVFTSFVD----------------------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1039 (1092)
Q Consensus       982 ~~l~fs~dg~~l~t~~~D----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1039 (1092)
                      ...+...++++++.|+.+                      ..+.+||+.+.+....    ..++..    .....++.. 
T Consensus       245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~----r~~~~~~~~-  315 (357)
T 2uvk_A          245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS----GELSQG----RAYGVSLPW-  315 (357)
T ss_dssp             SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE----EECSSC----CBSSEEEEE-
T ss_pred             cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC----CCCCCC----cccceeEEe-
Confidence            222334577788877742                      2578899987755432    122222    111122333 


Q ss_pred             CCCCCEEEEEeCCC------cEEEEeCCCCCCccccCCCCCcc
Q 001362         1040 PLKPTQFAVGLTNG------EVYVIEPNEPGDTWAVLPPDEIV 1076 (1092)
Q Consensus      1040 p~~~~~l~~~~~dg------~v~~w~~~~~~~~~~~~~~~~~~ 1076 (1092)
                        ++.+++.|+.++      .|.++++  ...+|....|...+
T Consensus       316 --~~~i~v~GG~~~~~~~~~~v~~l~~--~~~~~~~~~~~~~~  354 (357)
T 2uvk_A          316 --NNSLLIIGGETAGGKAVTDSVLITV--KDNKVTVQNLEHHH  354 (357)
T ss_dssp             --TTEEEEEEEECGGGCEEEEEEEEEC---CCSCEEEC-----
T ss_pred             --CCEEEEEeeeCCCCCEeeeEEEEEE--cCcEeEeeeccccc
Confidence              368889998764      2344455  55668877776643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.063  Score=56.89  Aligned_cols=198  Identities=9%  Similarity=0.038  Sum_probs=109.9

Q ss_pred             CEEEEEeCCCcEEEEEcCCceeeEeeccc-cCCeEEEEE--cC-CCCEEEEE-eCCCcEEEEEcCCCceeeeeeeecCCC
Q 001362          857 NVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVF--SD-ALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDG  931 (1092)
Q Consensus       857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~--sp-dg~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~  931 (1092)
                      .++++++.||.|+-.|..+|+.+.++... ..++....-  .+ ++..++.. +.||.|..++..+|.......+.....
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47888999999999999999999988754 123322110  01 23333333 589999999988774332111111111


Q ss_pred             CcCCCCCceEEEE------------ecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCC------EEEEEEe-----c
Q 001362          932 VMTLAPSETHIQF------------HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP------ISQATFS-----C  988 (1092)
Q Consensus       932 ~~~~~~~v~~l~~------------s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~------v~~l~fs-----~  988 (1092)
                      ..    +   +..            +.+|..++.+.++++.-.|+.+|+.+..+..+....      ..|....     .
T Consensus        91 ~S----P---~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~  163 (339)
T 2be1_A           91 TS----P---LHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE  163 (339)
T ss_dssp             TC----S---EEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred             cc----c---cccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence            00    0   111            245554555889999999999999998765442211      1111111     1


Q ss_pred             CCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 001362          989 DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1067 (1092)
Q Consensus       989 dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~ 1067 (1092)
                      .+..|+.+..+..+.+.+ .+|+ ...+....+.+.... ..+.. ....+. |+.. ++++.||.|...|.......|
T Consensus       164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~-~~~~~-~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD-VPLAL-QNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT-HHHHT-TCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             CCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccc-ccccc-cccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence            245777788888888777 5564 433332223222200 00000 000111 3444 557889999998888777778

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.89  E-value=1  Score=47.75  Aligned_cols=224  Identities=14%  Similarity=0.119  Sum_probs=115.8

Q ss_pred             CeEEEEEcCCceeeE-EecCCCCCeEEEEEcCCCCCEEEEEeC----CC-------cEEEEEcCCceee--EeeccccCC
Q 001362          823 GVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD----DS-------TILIYNARSSEVI--SKLEGHSKR  888 (1092)
Q Consensus       823 g~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~----dg-------~v~iwd~~~~~~~--~~l~~h~~~  888 (1092)
                      ..+..||..+.+-.. .+..........+... ++.+++.|+.    ++       .+.+||..+.+-.  ..+......
T Consensus        24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  102 (318)
T 2woz_A           24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL  102 (318)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred             cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence            458899988776433 2222222233333444 6788888883    12       2778888776432  222211111


Q ss_pred             eEEEEEcCCCCEEEEEeCC-------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-e-C---
Q 001362          889 VTGLVFSDALNILVSSGGD-------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E---  956 (1092)
Q Consensus       889 V~~l~~spdg~~l~s~s~D-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-d---  956 (1092)
                      -..+.+  ++++++.|+.+       ..+.+||..+.+......+  +...      ....+...++++++.| . +   
T Consensus       103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r------~~~~~~~~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A          103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL--PIKV------YGHNVISHNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC--SSCE------ESCEEEEETTEEEEECCEESSSC
T ss_pred             cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC--CCcc------cccEEEEECCEEEEEcCCCCCCC
Confidence            222222  67788888764       2478888887654332211  1111      1112223567766663 2 1   


Q ss_pred             --CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCceEEeeccccccCCCCccC
Q 001362          957 --THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCL 1029 (1092)
Q Consensus       957 --~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1092)
                        +.+.+||..+.+-...-.......-.++ ..-+++.++.|+.+     ..+.+||+.+.+....    ...|..    
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~----  243 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGV-AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM----TEFPQE----  243 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC----CCCSSC----
T ss_pred             ccceEEEEcCCCCEEEECCCCCCCcccceE-EEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC----CCCCCc----
Confidence              3599999987754332111111111122 22477888888754     3477889888764421    112221    


Q ss_pred             cccceEEEECCCCCCEEEEEeCC--------------CcEEEEeCCCCCCccccCC
Q 001362         1030 HVYPHAIAAHPLKPTQFAVGLTN--------------GEVYVIEPNEPGDTWAVLP 1071 (1092)
Q Consensus      1030 ~v~~~~~~~~p~~~~~l~~~~~d--------------g~v~~w~~~~~~~~~~~~~ 1071 (1092)
                       ....+++..  ++.+++.|+.+              ..+.+||+  ...+|....
T Consensus       244 -r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~  294 (318)
T 2woz_A          244 -RSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED--DKKEWAGML  294 (318)
T ss_dssp             -CBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEET--TTTEEEEEE
T ss_pred             -ccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeC--CCCEehhhc
Confidence             111122222  35788888764              35677777  445688763

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.88  E-value=0.67  Score=49.19  Aligned_cols=227  Identities=10%  Similarity=0.001  Sum_probs=110.5

Q ss_pred             EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC----CC-------cEEEEECCCCceeEE--EecCC
Q 001362          419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DK-------TIKVWDAVTGSRTYS--FEGHG  485 (1092)
Q Consensus       419 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~----d~-------~i~vwd~~~~~~~~~--~~~~~  485 (1092)
                      .+..||..+++-..  ..+..........+...++.  +++.|+.    ++       .+.+||..+++-...  +....
T Consensus        25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r  100 (318)
T 2woz_A           25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR  100 (318)
T ss_dssp             EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred             ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence            37889988765322  12221112222333345566  6666762    11       177888887754321  11111


Q ss_pred             cCeEEEeecccCCccEEEEEecC-------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC--Ccee
Q 001362          486 APVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESF  556 (1092)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~--~~~~  556 (1092)
                      .....+.+    ++.+++.|+.+       ..+.+||..+.+-...-..........+...+++.++.++....  ....
T Consensus       101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  176 (318)
T 2woz_A          101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR  176 (318)
T ss_dssp             CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred             cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence            11111222    45677777754       24667777654432221112111111222356777677664221  1345


Q ss_pred             EEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001362          557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                      +.++|+.+.+-...-.... ......++.+  ++..++.|+.+     ..+.+||+.+.+....-..+..  .....+..
T Consensus       177 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~  251 (318)
T 2woz_A          177 VFIYNPKKGDWKDLAPMKT-PRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVS  251 (318)
T ss_dssp             EEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEE
T ss_pred             EEEEcCCCCEEEECCCCCC-CcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEE
Confidence            8999998876543321111 1112222222  45666666633     3577899988765543222211  11222223


Q ss_pred             cCCCEEEEEeCC--------------CeEEEEECCCCceee
Q 001362          632 KNGTLLAVIANE--------------NRIKILETPESNSVD  658 (1092)
Q Consensus       632 ~~~~~l~~~~~d--------------g~i~iw~~~~~~~~~  658 (1092)
                      -++++++.|+.+              ..+.+||..+.+...
T Consensus       252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  292 (318)
T 2woz_A          252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG  292 (318)
T ss_dssp             ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred             ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence            357777777653              357778887765443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.84  E-value=0.086  Score=51.02  Aligned_cols=149  Identities=9%  Similarity=0.016  Sum_probs=85.6

Q ss_pred             CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee------eEee--ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001362          845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV------ISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD  916 (1092)
Q Consensus       845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~------~~~l--~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~  916 (1092)
                      .++.++|+| ++.+.++  .+|.++-.+..++..      -..+  .+... -.++.|.|+|.+.++  .||.|.-++-.
T Consensus        42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            667999999 8887776  678777766654221      1111  01122 478999999999988  56888777653


Q ss_pred             CCceeeeee--eecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceee-----eee-ccCCCCCEEEEEEec
Q 001362          917 GWGIQTCRS--LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL-----KQW-FPISSVPISQATFSC  988 (1092)
Q Consensus       917 ~~~~~~~~~--~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~-----~~~-~~~h~~~v~~l~fs~  988 (1092)
                      +.......-  .....+-..   .+..|.|.|+|.+-++. |+.++-....++...     ... -......-..+.|++
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~---~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWS---GFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  191 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGG---GEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             cCCCCceeccccEeccCCCC---ceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence            322111100  000111111   47899999999999998 888654333322110     011 112233444567889


Q ss_pred             CCCEEEEEECCCcEEEEEc
Q 001362          989 DCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       989 dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
                      +|...++.  +|  ++|..
T Consensus       192 ~G~l~~v~--~g--~~Y~~  206 (236)
T 1tl2_A          192 VGTLFGVQ--GG--KFYED  206 (236)
T ss_dssp             TSCEEEEE--TT--EEEEE
T ss_pred             CCcEEEEe--CC--eEEec
Confidence            98776655  66  44443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.35  E-value=3.5  Score=43.72  Aligned_cols=122  Identities=17%  Similarity=0.182  Sum_probs=71.0

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ....++...-...+.++|.|||+ ++++-...|.|++++..+++......+.             .+..........|+|
T Consensus        22 ~~~~~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~-------------~v~~~g~~GllGia~   87 (347)
T 3das_A           22 KVLRTVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVP-------------GVSPSGEGGLLGIAL   87 (347)
T ss_dssp             EEEEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECT-------------TCCCBTTBSEEEEEE
T ss_pred             ceeEEeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccC-------------ceeecCCCCceeeEe
Confidence            34445555555889999999998 6777655799999987666542210000             012234567889999


Q ss_pred             CCC---CCEEEEE-e--CCCEEEEEEccCCC----cc---cceE-EEc-ccccceeEEEEecCCCcEEEEEEe
Q 001362          405 SPD---GSLLGVA-Y--SKHIVQLYAYHGGS----DA---RQQL-EID-AHVGNVNDLAFSAPCKQISVITCG  462 (1092)
Q Consensus       405 spd---g~~las~-~--~d~~i~iwd~~~~~----~~---~~~~-~~~-~h~~~v~~~~~s~d~~~l~l~s~~  462 (1092)
                      +||   +.+|.+. +  .+..|.-|.+..+.    .+   +.+. .+. +....-..++|.|||.  ++++.+
T Consensus        88 ~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G  158 (347)
T 3das_A           88 SPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG  158 (347)
T ss_dssp             CTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred             ccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence            996   4445443 2  34556667666521    11   1111 121 1112346799999997  555543

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=95.29  E-value=0.013  Score=46.44  Aligned_cols=55  Identities=18%  Similarity=0.376  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhcc
Q 001362            5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSS   59 (1092)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~l~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~~   59 (1092)
                      ++|+-+-|++||..+||.+++.+|.+|.+++.+  ...=..-.|+=+|..++.+-.+
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK   66 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK   66 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence            579999999999999999999999999998874  2223566777788877776443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.29  E-value=0.53  Score=58.59  Aligned_cols=237  Identities=12%  Similarity=0.108  Sum_probs=134.3

Q ss_pred             eecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEE
Q 001362          341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV  420 (1092)
Q Consensus       341 ~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i  420 (1092)
                      -.+|..+ ++|.-. ..++.|+|+++.+.+..+.+                    ..+|..=.|-.+..+-+++  +..|
T Consensus        72 IMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~~l~lVT--~~aV  127 (1630)
T 1xi4_A           72 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNTVALVT--DNAV  127 (1630)
T ss_pred             ccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCCeeEEEc--CCeE
Confidence            3467776 566543 57899999998877765332                    2467777787555443333  3459


Q ss_pred             EEEEccCCCcccceEEEccc----ccceeEEEEecCCCcEEEEEEe------CCCcEEEEECCCCceeEEEecCCcCeEE
Q 001362          421 QLYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVYS  490 (1092)
Q Consensus       421 ~iwd~~~~~~~~~~~~~~~h----~~~v~~~~~s~d~~~l~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~~v~~  490 (1092)
                      .-|++.+......  .+..|    ...|..-..+++.+++ +++|=      -.|.+.+|..+.+. -+.+.||.+....
T Consensus       128 yHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~  203 (1630)
T 1xi4_A          128 YHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQ  203 (1630)
T ss_pred             EEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhhe
Confidence            9999975332211  22333    3457777788999863 33332      45788899866543 4556677665555


Q ss_pred             EeecccCCccEEEE-Eec---CCeEEEEEcCCC---CceE-----EecCC----CCceEEEEEccCCCEEEEEecCCCCc
Q 001362          491 LCPHAKENIHFIFS-ISV---DGKIKAWLYDSL---GARV-----DYDAP----GLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       491 ~~~~~~~~~~~l~s-~~~---dg~i~vwd~~~~---~~~~-----~~~~~----~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      +.....+....|++ +..   .+.+++-++...   ....     .+..+    ..-..++..++.-..+...+.    .
T Consensus       204 ~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~  279 (1630)
T 1xi4_A          204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y  279 (1630)
T ss_pred             eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----C
Confidence            54432222222332 222   278899888653   1111     11111    112235566666666665543    6


Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001362          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL  612 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~  612 (1092)
                      |.+.++|+.||.++..-+-..   .+|...+......-+++....|.|.--.+.....
T Consensus       280 G~~~~~d~~t~~~i~~~ris~---~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i  334 (1630)
T 1xi4_A          280 GYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (1630)
T ss_pred             ceEEEEecccchhhhhccccC---CceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence            789999999998876544333   4454444444444455555556555555444433

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.26  E-value=1.7  Score=48.54  Aligned_cols=111  Identities=14%  Similarity=0.132  Sum_probs=63.1

Q ss_pred             cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc--CCCCCceEEEEecC---CCEEEE--Ee---
Q 001362          886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM--TLAPSETHIQFHKD---QTRFLL--VH---  955 (1092)
Q Consensus       886 ~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~s~d---g~~la~--~~---  955 (1092)
                      -...+.|+|.|||+++++-...+.|++++..++....  .........  ........++|+||   +..|.+  +.   
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~  103 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP  103 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence            3457799999999988875444568888765544322  111111110  01135779999996   555554  22   


Q ss_pred             ---------CCcEEEEEcCCc-------eeeee-eccCCCCCEEEEEEecCCCEEEEEEC
Q 001362          956 ---------ETHLAIYEAEEL-------TCLKQ-WFPISSVPISQATFSCDCRMVFTSFV  998 (1092)
Q Consensus       956 ---------d~~i~lwd~~~~-------~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~  998 (1092)
                               ...|.-|+...+       +.+.. +..........|+|.|||.+.++.+.
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                     134555555322       11111 11121235788999999998777654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.04  E-value=1.3  Score=47.94  Aligned_cols=193  Identities=7%  Similarity=-0.039  Sum_probs=94.8

Q ss_pred             CCCEEEEEeC-----------CeEEEEEcCCceee--EEecCCCCCeEEEEEcCCCCCEEEEEeCC--------------
Q 001362          813 NDAYLFSASG-----------GVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDD--------------  865 (1092)
Q Consensus       813 dg~~l~~~sd-----------g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~d--------------  865 (1092)
                      ++++++.|+.           ..+.+||..+.+-.  ..+......-.+++. . ++++++.|+.+              
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~  142 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEA  142 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhc
Confidence            5666666542           34889998775432  222211111122223 3 67888888865              


Q ss_pred             -------------------------CcEEEEEcCCce--eeEeeccccCCeEEEEEcCCCCEEEEEeCC------CcEEE
Q 001362          866 -------------------------STILIYNARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGD------AQIFV  912 (1092)
Q Consensus       866 -------------------------g~v~iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~l~s~s~D------g~i~i  912 (1092)
                                               ..+.+||..+.+  .+..+......-.+++.. ++++++.|+.+      ..+.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~  221 (357)
T 2uvk_A          143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFE  221 (357)
T ss_dssp             TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEE
T ss_pred             CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEE
Confidence                                     478999998764  333332111110122222 66777777642      35777


Q ss_pred             EEc--CCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eC----------------------CcEEEEEcCCc
Q 001362          913 WDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE----------------------THLAIYEAEEL  967 (1092)
Q Consensus       913 wd~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d----------------------~~i~lwd~~~~  967 (1092)
                      +|+  .+.+..   .+.......   ......+...++++++.+ .+                      ..+.+||..+.
T Consensus       222 ~d~d~~~~~W~---~~~~~~~~~---~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~  295 (357)
T 2uvk_A          222 LDFTGNNLKWN---KLAPVSSPD---GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG  295 (357)
T ss_dssp             EECC---CEEE---ECCCSSTTT---CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC--
T ss_pred             EEecCCCCcEE---ecCCCCCCc---ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC
Confidence            877  443322   222211110   012223444566766663 21                      24788998866


Q ss_pred             eeeeeeccCCCCCEEEEEEecCCCEEEEEECCC------cEEEEEcCCCceEEe
Q 001362          968 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDG------TLSIHEASNLEVQCR 1015 (1092)
Q Consensus       968 ~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg------~i~vwd~~~~~~~~~ 1015 (1092)
                      +-...-... ..+....+...++++++.||.++      .|.++++++++....
T Consensus       296 ~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          296 KWDKSGELS-QGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             -CEEEEECS-SCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             ceeeCCCCC-CCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            533221111 11111223445888888898653      355668888877643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.93  E-value=2.5  Score=47.24  Aligned_cols=163  Identities=12%  Similarity=0.087  Sum_probs=90.6

Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee--eEeecc------ccCCeEEEEEcCC----CCEEEEEeC-----
Q 001362          844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEG------HSKRVTGLVFSDA----LNILVSSGG-----  906 (1092)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~------h~~~V~~l~~spd----g~~l~s~s~-----  906 (1092)
                      .....++|.| +++++++-...+.|++++..+++.  +..+..      ..+....|+|+||    +.+.++-+.     
T Consensus        27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            4567999999 888777544445788888765543  223321      2456779999995    444444432     


Q ss_pred             -------CCcEEEEEcCCC--ceeee-eeeecCCCCcCCCCCceEEEEecCCCEEEEEeCC-------------------
Q 001362          907 -------DAQIFVWDVDGW--GIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-------------------  957 (1092)
Q Consensus       907 -------Dg~i~iwd~~~~--~~~~~-~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~-------------------  957 (1092)
                             ...|.-+++..+  ..... .++........  .....++|.|||.+.++..|+                   
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~--H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~  183 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD--HQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPT  183 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS--CCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC--CCCCeEeECCCCeEEEEECCCCCCCccccccccccccccc
Confidence                   234555655432  11111 12221111111  246899999999988873221                   


Q ss_pred             ------------cEEEEEcC-Cce-----------eeeeeccCCCCCEEEEEEecCCCEEEEE-ECCCcEEEEEcCCC
Q 001362          958 ------------HLAIYEAE-ELT-----------CLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1010 (1092)
Q Consensus       958 ------------~i~lwd~~-~~~-----------~~~~~~~~h~~~v~~l~fs~dg~~l~t~-~~Dg~i~vwd~~~~ 1010 (1092)
                                  .=+|+.+. .+.           ....+..+| .....++|.++|++.++- +.++.-.|.-+..|
T Consensus       184 ~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G  260 (454)
T 1cru_A          184 QQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKG  260 (454)
T ss_dssp             HHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred             cccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecCC
Confidence                        11344332 232           123333444 456789999998866653 34555566666554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.61  E-value=5.1  Score=41.74  Aligned_cols=182  Identities=10%  Similarity=0.055  Sum_probs=101.5

Q ss_pred             EEeecCCCceEEEEEcCC-------------CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001362          339 SMDFHPVQHTLLLVGTNV-------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       339 ~v~~spdg~~llasg~~d-------------~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      +--++++|+++..+...+             ..|+..++..++...                    +..  ..  +.+|+
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~--~~--~~~~s  112 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP--DP--CIYAS  112 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC--SC--EEEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec--CC--ccEEE
Confidence            345689998776666543             356777777665332                    111  11  23678


Q ss_pred             CCCCEEEEEe--CC--CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001362          406 PDGSLLGVAY--SK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  481 (1092)
Q Consensus       406 pdg~~las~~--~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~  481 (1092)
                      +++++|+...  .+  ..|..-++.+.. ..   .+..+..    .+|+++++. +..+......|.+-++..+.....+
T Consensus       113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~  183 (302)
T 3s25_A          113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY  183 (302)
T ss_dssp             EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred             EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence            8999999876  23  345555555432 22   2333332    467889985 2334334678888888776544333


Q ss_pred             ecCCcCeEEEeecccCCccEEEEEecCC--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001362          482 EGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                      .+   ... ..+.  |++.+|+-....+  .|..-+++...... +..  ..+  ..++|++++|+.+....  ...|..
T Consensus       184 ~~---~~~-~~~~--P~g~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt~--~~~--~~~~~~g~~Iy~~~~~~--~~~i~~  250 (302)
T 3s25_A          184 DC---NCY-KPVV--LDDTNVYYMDVNRDNAIVHVNINNPNPVV-LTE--ANI--EHYNVYGSLIFYQRGGD--NPALCV  250 (302)
T ss_dssp             CS---CEE-EEEE--EETTEEEEEEGGGTTEEEEECSSSCCCEE-CSC--SCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred             CC---Ccc-ceee--ecCCEEEEEEcCCCcEEEEEECCCCCeEE-EeC--CCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence            32   222 2233  3445666555432  45555665544332 222  222  34888999998764321  356777


Q ss_pred             EeCCCCe
Q 001362          560 WNESEGA  566 (1092)
Q Consensus       560 wd~~~~~  566 (1092)
                      .++....
T Consensus       251 ~~~DG~~  257 (302)
T 3s25_A          251 VKNDGTG  257 (302)
T ss_dssp             EETTSCC
T ss_pred             EECCCCc
Confidence            7775443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.27  E-value=0.1  Score=55.24  Aligned_cols=194  Identities=10%  Similarity=0.033  Sum_probs=104.4

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecC-CcCeEEEeeccc-CCccEEEEE-ecCCeEEEEEcCCCCceEEecCC----C
Q 001362          457 SVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHAK-ENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAP----G  529 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~-~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~----~  529 (1092)
                      +++.++.||.|.-.|.++|+.+.++... ..++....-... .++..++.. +.||.|..++..++.....+...    .
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~   91 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST   91 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence            5788999999999999999999988754 123322211111 133334343 58999999988776444332211    1


Q ss_pred             CceEE---EEE-----ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCc-----eEEEEEc-----CCCC
Q 001362          530 LGCTR---MAY-----SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS-----VSVVHFD-----TAKD  591 (1092)
Q Consensus       530 ~~i~~---~~~-----s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~-----v~~~~~~-----p~~~  591 (1092)
                      .++..   ..+     +..+..+++++.    ++.++..|..+|+.+..+..... ...     ..+....     ..+.
T Consensus        92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~e~~~~~~d~~~d~~~~  166 (339)
T 2be1_A           92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSK-NGYFGSQSVDCSPEEKIKLQECEN  166 (339)
T ss_dssp             CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCB-CC--------------------CC
T ss_pred             cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCC-cccccccccccccccccccccCCC
Confidence            11110   000     014456666665    77899999999999988865321 010     0011110     1235


Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEE-----eCCCCCCCC-ceEEEccCCCEEEEEeCCCeEEEEECCCCceee
Q 001362          592 QILAAGDDHVIKIWDMNKVQLLTTI-----DAGGGLPEN-PRICFNKNGTLLAVIANENRIKILETPESNSVD  658 (1092)
Q Consensus       592 ~l~~~s~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v-~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  658 (1092)
                      .++.+..+..+.+.+ ++|+ ...+     ........+ ..-..+.|+.+ ++++.||.|.-+|..++..+.
T Consensus       167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             eEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            677777777777666 3443 2111     100000000 00001234555 557889999999988887654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.11  E-value=5.2  Score=44.58  Aligned_cols=195  Identities=11%  Similarity=0.100  Sum_probs=116.5

Q ss_pred             cCCCEEEEEe--CCeEEEEEcCCceeeEEecC-CCCCeEEEEEc--CCCCCEEEEEeC-------CCcE-----------
Q 001362          812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFN--PHDNNVIAIGMD-------DSTI-----------  868 (1092)
Q Consensus       812 ~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s--~~d~~~lasg~~-------dg~v-----------  868 (1092)
                      .||+||..-.  ..+|...++...++-+.+.- ....+..++|-  | +..+++.+++       ||..           
T Consensus       140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~  218 (638)
T 3sbq_A          140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM  218 (638)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred             eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence            4789998887  47788899998887666553 34577888886  6 6667777654       2221           


Q ss_pred             -EEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEEcCC-------Cceee---
Q 001362          869 -LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDVDG-------WGIQT---  922 (1092)
Q Consensus       869 -~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg---------------~i~iwd~~~-------~~~~~---  922 (1092)
                       ...|..+.+...++.- .+....+...++|++.++.+...               -+.++++..       |+...   
T Consensus       219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g  297 (638)
T 3sbq_A          219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD  297 (638)
T ss_dssp             EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence             1123333333333221 22333456678888888776532               255665421       11110   


Q ss_pred             --eeeeecCC----CC-----cCCCCCceEEEEecCCCEEEEE--eCCcEEEEEcCCcee-------------eeeeccC
Q 001362          923 --CRSLQTPD----GV-----MTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC-------------LKQWFPI  976 (1092)
Q Consensus       923 --~~~~~~~~----~~-----~~~~~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~~-------------~~~~~~~  976 (1092)
                        ..++....    +.     .+.......+.++|||++++++  -+.++.++|++....             ....  .
T Consensus       298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~--e  375 (638)
T 3sbq_A          298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP--E  375 (638)
T ss_dssp             CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC--B
T ss_pred             CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec--c
Confidence              11111111    00     0111345679999999999995  467899999974221             1111  1


Q ss_pred             CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001362          977 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       977 h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
                      -.......+|.++|.-..|-.-|..|.-|++...
T Consensus       376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence            2567788999999954555558999999999764

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=93.18  E-value=12  Score=40.88  Aligned_cols=259  Identities=12%  Similarity=0.063  Sum_probs=122.7

Q ss_pred             CCCeeEEEEec--CCCEEEEEeCC----eEEEEEcCCceeeEEec------C--------CCCCeEEEEEcCCC-CCEEE
Q 001362          802 QEAVPCFALSK--NDAYLFSASGG----VISLYIVMTFKTILTIM------P--------PSPTATSLAFNPHD-NNVIA  860 (1092)
Q Consensus       802 ~~~v~~~~~s~--dg~~l~~~sdg----~i~iwd~~~~~~~~~~~------~--------~~~~i~~l~~s~~d-~~~la  860 (1092)
                      ...|.++++.|  ++.+++.+..+    .|...+ ..++.-..+.      .        ....|.++++.|.+ ...|.
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            35688999998  66666666554    333321 2222212111      1        11247789998743 44556


Q ss_pred             EEeCCCcEEEEEcCCceeeEeecc-------------------ccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCce
Q 001362          861 IGMDDSTILIYNARSSEVISKLEG-------------------HSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGI  920 (1092)
Q Consensus       861 sg~~dg~v~iwd~~~~~~~~~l~~-------------------h~~~V~~l~~spd-g~~l~s~s~Dg~i~iwd~~~~~~  920 (1092)
                      ++...+.|...+ +.|+.-..+..                   ....|.+|.+.|. ...|..+..++.|...+-.... 
T Consensus       133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~t-  210 (394)
T 3b7f_A          133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTD-  210 (394)
T ss_dssp             EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSS-
T ss_pred             EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCC-
Confidence            566566554442 22222111110                   1235789999873 3444444444434433222211 


Q ss_pred             eeeeeeec-CCC-Cc-----CCCCCceEEEEecC-CCEEEEEeCCcEEEEEcCCceeeeeeccCC-C---CCEEEEEEec
Q 001362          921 QTCRSLQT-PDG-VM-----TLAPSETHIQFHKD-QTRFLLVHETHLAIYEAEELTCLKQWFPIS-S---VPISQATFSC  988 (1092)
Q Consensus       921 ~~~~~~~~-~~~-~~-----~~~~~v~~l~~s~d-g~~la~~~d~~i~lwd~~~~~~~~~~~~~h-~---~~v~~l~fs~  988 (1092)
                        ...+.. ... ..     .....+.++++.|+ ...|.++..+.|...+- .++....+...- .   ..+..++++|
T Consensus       211 --W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p  287 (394)
T 3b7f_A          211 --WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ  287 (394)
T ss_dssp             --CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred             --ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence              111111 000 00     00124788999986 35565655565555442 233222222111 1   3456788876


Q ss_pred             -CCCEEEEEEC-----------CCcEEEEEcCC-CceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcE
Q 001362          989 -DCRMVFTSFV-----------DGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1055 (1092)
Q Consensus       989 -dg~~l~t~~~-----------Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v 1055 (1092)
                       +...|..++.           ++...+|...+ |+....+.  ..++....-..+...+++++|.++..|.+++.++.|
T Consensus       288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l  365 (394)
T 3b7f_A          288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI  365 (394)
T ss_dssp             SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred             CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence             3334444432           33345665554 44433332  112221000112223577888655667777766654


Q ss_pred             EEEeCCCCCCccccC
Q 001362         1056 YVIEPNEPGDTWAVL 1070 (1092)
Q Consensus      1056 ~~w~~~~~~~~~~~~ 1070 (1092)
                        |.-.+.+..|...
T Consensus       366 --~~S~D~G~tW~~~  378 (394)
T 3b7f_A          366 --WASADEGEHWQCI  378 (394)
T ss_dssp             --EEESSTTSBCEEE
T ss_pred             --EEECCCCCCceEc
Confidence              4555567778754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.59  E-value=5.2  Score=47.54  Aligned_cols=196  Identities=10%  Similarity=0.105  Sum_probs=106.6

Q ss_pred             cCCCEEEEEeC-----CeEEEEEcCCceeeEEe-c-------CCCCCeEEEEEcCCCCCEEEEEeCCC------cEEEEE
Q 001362          812 KNDAYLFSASG-----GVISLYIVMTFKTILTI-M-------PPSPTATSLAFNPHDNNVIAIGMDDS------TILIYN  872 (1092)
Q Consensus       812 ~dg~~l~~~sd-----g~i~iwd~~~~~~~~~~-~-------~~~~~i~~l~~s~~d~~~lasg~~dg------~v~iwd  872 (1092)
                      .++.+++.|+.     ..+.+||..+.+-...- .       .....-.++.+.. ++++++.|+.++      .+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence            56677776652     45889998776433222 1       1112234445543 466777777543      588899


Q ss_pred             cCCce--eeEeeccccCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCceeeeeeee-cCCCCcCCCCCceEEEEecC
Q 001362          873 ARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQ-TPDGVMTLAPSETHIQFHKD  947 (1092)
Q Consensus       873 ~~~~~--~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~s~d  947 (1092)
                      ..+.+  .+..+......- +++...++++++.||.++  .+.+||..+.......... .+....    ...++.+..+
T Consensus       475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~----~~~a~v~~~~  549 (695)
T 2zwa_A          475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL----VSAGLEFDPV  549 (695)
T ss_dssp             TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCC----BSCEEEEETT
T ss_pred             CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccc----ceeEEEEeCC
Confidence            88753  222222111111 233324888999988765  6899999886643322100 111111    1234566666


Q ss_pred             -CCEEEEE-e--C-----CcEEEEEcCCcee-----eeeecc--CCCCCEEEEEEecCCCEEEEEECC--------CcEE
Q 001362          948 -QTRFLLV-H--E-----THLAIYEAEELTC-----LKQWFP--ISSVPISQATFSCDCRMVFTSFVD--------GTLS 1003 (1092)
Q Consensus       948 -g~~la~~-~--d-----~~i~lwd~~~~~~-----~~~~~~--~h~~~v~~l~fs~dg~~l~t~~~D--------g~i~ 1003 (1092)
                       +++++.| .  +     +.+.+||..+...     -.....  .....-.+++...++++++.||.+        ..+.
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence             5565654 2  2     3589999987761     111111  111111123333447888888743        4599


Q ss_pred             EEEcCCCceE
Q 001362         1004 IHEASNLEVQ 1013 (1092)
Q Consensus      1004 vwd~~~~~~~ 1013 (1092)
                      +||+.+.+..
T Consensus       630 ~yd~~t~~W~  639 (695)
T 2zwa_A          630 SLDPLSETLT  639 (695)
T ss_dssp             EEETTTTEEE
T ss_pred             EEECCCCeEE
Confidence            9999988765

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.65  E-value=19  Score=39.91  Aligned_cols=56  Identities=21%  Similarity=0.169  Sum_probs=35.9

Q ss_pred             CcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceEEEc---------ccccceeEEEEecC
Q 001362          397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAP  452 (1092)
Q Consensus       397 ~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~s~d  452 (1092)
                      .....|+|.|||. .|+++...|.|++++.........+..+.         ........|+|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            4567899999996 56666788999999754321111111221         11356788999997

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=91.17  E-value=29  Score=40.98  Aligned_cols=242  Identities=8%  Similarity=0.018  Sum_probs=121.8

Q ss_pred             ecCCCceEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC-----CcEEEEEECCCCCEEE
Q 001362          342 FHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-----VSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       342 ~spdg~~llasg~~d~----~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-----~~V~~l~~spdg~~la  412 (1092)
                      ++||+++++++-|..|    .++++|+.+++.+.. .|. ..              ...     .....++|..++..++
T Consensus       137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~--------------~k~~~~~~~~~~~~~W~d~~~~~~  200 (711)
T 4hvt_A          137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PI--------------TNSGKLLEGKFTYPTWINKDTIIF  200 (711)
T ss_dssp             CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CB--------------CTTCCBCCEETCCEEEEETTEEEE
T ss_pred             cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-cc--------------cccccccccccceeeEECCCEEEE
Confidence            8999997666655443    599999999876632 110 00              000     0112346763333333


Q ss_pred             EE----------eCCCEEEEEEccCCCcccceEEEcccccce-eEEEEecCCCc---EEEEEEeCC---CcEEEEECCC-
Q 001362          413 VA----------YSKHIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQ---ISVITCGDD---KTIKVWDAVT-  474 (1092)
Q Consensus       413 s~----------~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v-~~~~~s~d~~~---l~l~s~~~d---~~i~vwd~~~-  474 (1092)
                      +.          +....|+.|.+.+...-.. ..+.+....+ .....+++++.   ..+++.+.+   ..+.+.|... 
T Consensus       201 ~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  279 (711)
T 4hvt_A          201 NLVLHKNEITSSLYPNSLYIWKRGESIEKAK-KLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYK  279 (711)
T ss_dssp             CCCCSTTCBCTTSSBCEEEEEETTSCGGGCE-EEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSS
T ss_pred             EeCCCCCCcCcCCCCCEEEEEECCCChHHCe-EEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCC
Confidence            21          1124688888776532221 1343333332 34556777774   235554422   3456666543 


Q ss_pred             -CceeEEEecCCcCeEEEeecccCCccEEEEE----------ecCCeEEEEEcCCC-------CceEE-e-cCCCCceEE
Q 001362          475 -GSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGKIKAWLYDSL-------GARVD-Y-DAPGLGCTR  534 (1092)
Q Consensus       475 -~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~vwd~~~~-------~~~~~-~-~~~~~~i~~  534 (1092)
                       ++ +..+.......  +..  ..++.+++..          ...+.|...++...       ..... + ......+..
T Consensus       280 ~~~-~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  354 (711)
T 4hvt_A          280 NLK-LQKINMPSDAT--LQG--SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNF  354 (711)
T ss_dssp             SCE-EEECCSCTTCE--EEE--EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEE
T ss_pred             CCc-ceEeecCCcce--Eee--eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEE
Confidence             33 22222111111  111  1133444422          24677888988763       12222 2 223346777


Q ss_pred             EEEccCCCEEEEEecCCCCceeEEEEeCCCCe-EEEE-EeeccccCCceEEEEEcCCCCEEEE-Ee---CCCcEEEEECC
Q 001362          535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRT-YQGLQLQHNSVSVVHFDTAKDQILA-AG---DDHVIKIWDMN  608 (1092)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~-~s---~dg~i~iwd~~  608 (1092)
                      +.+..+ ..+++...  ++...++++++.++. .... +....  .+.+......+++..++. .+   .-+.+..+|..
T Consensus       355 ~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          355 ISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             EEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            888765 34444433  446678999987775 2233 22211  145666666677655443 33   34668888876


Q ss_pred             CCc
Q 001362          609 KVQ  611 (1092)
Q Consensus       609 ~~~  611 (1092)
                       ++
T Consensus       430 -~~  431 (711)
T 4hvt_A          430 -HE  431 (711)
T ss_dssp             -SC
T ss_pred             -Cc
Confidence             44

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=91.11  E-value=16  Score=37.91  Aligned_cols=216  Identities=9%  Similarity=0.099  Sum_probs=117.5

Q ss_pred             ecCCCceEEEEEcC-CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC---
Q 001362          342 FHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---  417 (1092)
Q Consensus       342 ~spdg~~llasg~~-d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d---  417 (1092)
                      |+++|.++..+... ++.|...+.+......                    +..  .  .+--++++|++|+.+...   
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~--------------------l~~--~--~~~~i~~~g~~Iyy~~~~~~~   76 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHK--------------------LSN--D--TAMYINADKNYVYYVRNNNQK   76 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETTSCSCEE--------------------EEE--E--EEEEEEECSSEEEEEEECC--
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCCCCCCEE--------------------ccC--C--ceeeEEEcCCEEEEEECCCCc
Confidence            44567766555443 4556666655444332                    111  1  133457899999887543   


Q ss_pred             -----------CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEE--eCCCcEEEEECCCCceeEEEecC
Q 001362          418 -----------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       418 -----------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~--~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                                 ..|+..++.+++...    +...    .+..|+++++.++++..  .....|..-++... ....+..+
T Consensus        77 ~~~~~~~~~n~~~Iy~i~~dg~~~~~----l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~  147 (302)
T 3s25_A           77 ITSQTFFSYDRNSLCRIKRNGHGSTV----LDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNH  147 (302)
T ss_dssp             ----CCSSCCSEEEEEEETTSCCCEE----EECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESS
T ss_pred             ccccceeccCCCeEEEEeCCCCcceE----eecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCC
Confidence                       357777777764221    2221    12378889995433331  23445666666543 34445444


Q ss_pred             CcCeEEEeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001362          485 GAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      ..    ..+.+  +++.|+-.+. ...|.+-+++..........   ... ..+.|++.+|+......  ...|..-++.
T Consensus       148 ~~----~~~~~--~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~--~~~I~~~~ld  215 (302)
T 3s25_A          148 YL----FTCNT--SDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNR--DNAIVHVNIN  215 (302)
T ss_dssp             CC----CCSEE--ETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGG--TTEEEEECSS
T ss_pred             Cc----eEeeE--ECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCC--CcEEEEEECC
Confidence            32    23333  4455655444 56777777766554443332   222 34669999998765422  2467777776


Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCC
Q 001362          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKV  610 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~--dg~i~iwd~~~~  610 (1092)
                      .+.. ..+..     ..+  ..|+|++.+|+-++.  .+.|..-++...
T Consensus       216 G~~~-~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          216 NPNP-VVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             SCCC-EECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCe-EEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            6553 33332     223  347888888876543  345665566543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.15  E-value=11  Score=44.82  Aligned_cols=201  Identities=13%  Similarity=0.072  Sum_probs=103.0

Q ss_pred             cCCCcEEEEEEeCC----CcEEEEECCCCceeEEE-e-----cCCcC-eEEEeecccCCccEEEEEecCC------eEEE
Q 001362          451 APCKQISVITCGDD----KTIKVWDAVTGSRTYSF-E-----GHGAP-VYSLCPHAKENIHFIFSISVDG------KIKA  513 (1092)
Q Consensus       451 ~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~-~-----~~~~~-v~~~~~~~~~~~~~l~s~~~dg------~i~v  513 (1092)
                      .++.  +++.||.+    ..+.+||..+++-...- .     ..... -.+++.. ..++.+++.|+.++      .+.+
T Consensus       396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~-~~~~~lyv~GG~~~~~~~~~dv~~  472 (695)
T 2zwa_A          396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI-SRNNQLLLIGGRKAPHQGLSDNWI  472 (695)
T ss_dssp             CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE-TTTTEEEEECCBSSTTCBCCCCEE
T ss_pred             ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE-ccCCEEEEEcCCCCCCCccccEEE
Confidence            4455  56666643    46888998877644322 1     01111 1112221 11456777776543      4677


Q ss_pred             EEcCCCCceEEecCCCCc-eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee--ccccCCceEEEEEcCC-
Q 001362          514 WLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTA-  589 (1092)
Q Consensus       514 wd~~~~~~~~~~~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~p~-  589 (1092)
                      ||..+.+-...-...... -.+++...+++.++.||.+...  .+.+||+.+......-..  .........++.+..+ 
T Consensus       473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~  550 (695)
T 2zwa_A          473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS  550 (695)
T ss_dssp             EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred             EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence            777664322211111111 1223333488888888765543  699999988765433220  1101122333555555 


Q ss_pred             CCEEEEEeC--C-----CcEEEEECCCCc------eEEEEeCCCCCCCC-ceEEEccCCCEEEEEeC--------CCeEE
Q 001362          590 KDQILAAGD--D-----HVIKIWDMNKVQ------LLTTIDAGGGLPEN-PRICFNKNGTLLAVIAN--------ENRIK  647 (1092)
Q Consensus       590 ~~~l~~~s~--d-----g~i~iwd~~~~~------~~~~~~~~~~~~~v-~~v~~s~~~~~l~~~~~--------dg~i~  647 (1092)
                      +..++.|+.  +     ..+.+||+.+..      ......... .... ..++...++++++.|+.        ...+.
T Consensus       551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~-~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL-FQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGG-GCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCC-CCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence            555566654  2     458899998877      222222110 1111 23333344777777774        34588


Q ss_pred             EEECCCCcee
Q 001362          648 ILETPESNSV  657 (1092)
Q Consensus       648 iw~~~~~~~~  657 (1092)
                      +||..+.+..
T Consensus       630 ~yd~~t~~W~  639 (695)
T 2zwa_A          630 SLDPLSETLT  639 (695)
T ss_dssp             EEETTTTEEE
T ss_pred             EEECCCCeEE
Confidence            8888776443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.05  E-value=14  Score=37.80  Aligned_cols=222  Identities=13%  Similarity=0.104  Sum_probs=107.6

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      .|..++....-  .++. . ||.|..|-......+..   +                ......|..++...+-. ++. .
T Consensus        25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~---p----------------~~~~~~i~~ia~G~~hs-~~l-~   79 (282)
T 3qhy_B           25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM---P----------------AATQSGVDAIAAGNYHS-LAL-K   79 (282)
T ss_dssp             SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC---C----------------GGGGSCCCEEEECSSEE-EEE-E
T ss_pred             CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC---C----------------ccCCCCEEEEEeCCCEE-EEE-E
Confidence            45566555443  2333 3 78888887654332211   0                00123566666654332 233 4


Q ss_pred             CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001362          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  495 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  495 (1092)
                       ||.|..|-.....++...   ..-...|..++...+-.    +.-. ||.|..|-....-.+.........|..++.- 
T Consensus        80 -~G~v~~wG~n~~Gqlg~P---~~~~~~v~~ia~G~~hs----~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G-  149 (282)
T 3qhy_B           80 -DGEVIAWGGNEDGQTTVP---AEARSGVDAIAAGAWAS----YALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG-  149 (282)
T ss_dssp             -TTEEEEEECCTTSTTCCC---GGGSSSEEEEEEETTEE----EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC-
T ss_pred             -CCEEEEeeCCCCCCCCCC---cccCCCeEEEECcCCEE----EEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc-
Confidence             899999987654333211   11134677777665432    2334 8999999754322221111123446666542 


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001362          496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1092)
Q Consensus       496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1092)
                        ....++ -. ||.|..|-.......-.-......|..++...+...++   .    ++.|+.|-....-.+.. ... 
T Consensus       150 --~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~-p~~-  216 (282)
T 3qhy_B          150 --VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTV-PTE-  216 (282)
T ss_dssp             --SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCC-CGG-
T ss_pred             --cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCC-Ccc-
Confidence              222333 34 79999996654333211111123455555443332222   2    44588886543211110 000 


Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001362          576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  609 (1092)
Q Consensus       576 ~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~  609 (1092)
                       ....|..++.....  .++.. ||.++.|-...
T Consensus       217 -~~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~  246 (282)
T 3qhy_B          217 -ALSGVSAIASGEWY--SLALK-NGKVIAWGSSR  246 (282)
T ss_dssp             -GGSSCCEEEECSSC--EEEEE-TTEEEEESTTC
T ss_pred             -cCCCceEEEcCCCE--EEEEE-CCEEEEecCCC
Confidence             11346666655443  33333 88899886554

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=89.58  E-value=22  Score=38.04  Aligned_cols=171  Identities=12%  Similarity=0.084  Sum_probs=91.6

Q ss_pred             cEEEEECCCC--ceeEEEecC------CcCeEEEeec-ccC-----CccEEEEEecCCeEEEEEcCCCCceEEec----C
Q 001362          466 TIKVWDAVTG--SRTYSFEGH------GAPVYSLCPH-AKE-----NIHFIFSISVDGKIKAWLYDSLGARVDYD----A  527 (1092)
Q Consensus       466 ~i~vwd~~~~--~~~~~~~~~------~~~v~~~~~~-~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~  527 (1092)
                      .|.+||+.++  +.++++.-.      ...+..+.+. ..+     ++...++-+..+.|.|+|+.+++......    .
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5778888888  888776532      2346777776 211     22233444456789999998776544331    1


Q ss_pred             C--------------CCceEEEEEccC----CCEEEEEecCCCCceeEEEEe---CCCCeEEE--EEeeccccCCceEEE
Q 001362          528 P--------------GLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWN---ESEGAIKR--TYQGLQLQHNSVSVV  584 (1092)
Q Consensus       528 ~--------------~~~i~~~~~s~d----g~~l~~~~~~~~~~~~i~iwd---~~~~~~~~--~~~~~~~~~~~v~~~  584 (1092)
                      .              ...+..++++|+    ++.|+.....+.   .++-..   ++......  ...+.......-..+
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~---~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~  280 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI---KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIAL  280 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS---EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC---cEEEEEHHHhhCcchhhceEEeeecCCCCCcceE
Confidence            1              136788999998    777877654321   122221   11111111  112222001233455


Q ss_pred             EEc-CCCCEEEEEeCCCcEEEEECCC-C---ceEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001362          585 HFD-TAKDQILAAGDDHVIKIWDMNK-V---QLLTTIDAGGGLPENPRICFNKNGTLLAV  639 (1092)
Q Consensus       585 ~~~-p~~~~l~~~s~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  639 (1092)
                      ++. .+|..+++--+.+.|..|+..+ .   .....+...........+.+.++|.+.+.
T Consensus       281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~  340 (381)
T 3q6k_A          281 AYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFM  340 (381)
T ss_dssp             EECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEE
T ss_pred             EEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEE
Confidence            675 5666666666888999999876 1   22333332223334455666555543333

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=88.14  E-value=27  Score=41.19  Aligned_cols=241  Identities=9%  Similarity=0.011  Sum_probs=117.4

Q ss_pred             ECCCCCEEEEE-eC----CCEEEEEEccCCCcccceEEEcccc-----cceeEEEEecCCCcEEEEEE----------eC
Q 001362          404 WSPDGSLLGVA-YS----KHIVQLYAYHGGSDARQQLEIDAHV-----GNVNDLAFSAPCKQISVITC----------GD  463 (1092)
Q Consensus       404 ~spdg~~las~-~~----d~~i~iwd~~~~~~~~~~~~~~~h~-----~~v~~~~~s~d~~~l~l~s~----------~~  463 (1092)
                      ++||+++++.+ |.    -..++++|+++++.+.....-....     .....++|..++.  ++++.          +.
T Consensus       137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~~~~~~~  214 (711)
T 4hvt_A          137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNEITSSLY  214 (711)
T ss_dssp             CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTCBCTTSS
T ss_pred             cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCE--EEEEeCCCCCCcCcCCC
Confidence            88999998876 22    2369999999987553211100000     0123457874443  34432          12


Q ss_pred             CCcEEEEECCCCc--eeEEEecCCcCeE-EEeecccCCcc---EEEEEecC---CeEEEEEcCCCCc-eEEecCCCCceE
Q 001362          464 DKTIKVWDAVTGS--RTYSFEGHGAPVY-SLCPHAKENIH---FIFSISVD---GKIKAWLYDSLGA-RVDYDAPGLGCT  533 (1092)
Q Consensus       464 d~~i~vwd~~~~~--~~~~~~~~~~~v~-~~~~~~~~~~~---~l~s~~~d---g~i~vwd~~~~~~-~~~~~~~~~~i~  533 (1092)
                      ...|+.|.+-+..  -...+.+....+. +.....++...   .+++.+.+   ..+.+.+.+.... ...+......  
T Consensus       215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  292 (711)
T 4hvt_A          215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA--  292 (711)
T ss_dssp             BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC--
T ss_pred             CCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc--
Confidence            3468888776652  2334444444432 22222222221   35554423   3345555543222 2333322221  


Q ss_pred             EEEEccCCCEEEEEecC------CCCceeEEEEeCCCCe-------EEEE-EeeccccCCceEEEEEcCCCCEEEEEeCC
Q 001362          534 RMAYSANGRRLFSCGTS------KEGESFLVEWNESEGA-------IKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDD  599 (1092)
Q Consensus       534 ~~~~s~dg~~l~~~~~~------~~~~~~i~iwd~~~~~-------~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~~s~d  599 (1092)
                      .+..+.++.+++....+      .-..+.|...|+.++.       ..+. +....  ...+..+.+..+ ..+++...+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~-~l~~~~~~~  369 (711)
T 4hvt_A          293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA--NEVFNFISTTKD-RVFLATYDN  369 (711)
T ss_dssp             EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT--TEEEEEEEECSS-CEEEEEEET
T ss_pred             eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC--CCeEEEEEEECC-EEEEEEEEC
Confidence            12344566655543221      0124558888877642       1222 32222  346778888875 566666666


Q ss_pred             Cc--EEEEECCCCc-eEEE-EeCCCCCCCCceEEEccCCCEE-EEEeC---CCeEEEEECC
Q 001362          600 HV--IKIWDMNKVQ-LLTT-IDAGGGLPENPRICFNKNGTLL-AVIAN---ENRIKILETP  652 (1092)
Q Consensus       600 g~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~s~~~~~l-~~~~~---dg~i~iw~~~  652 (1092)
                      +.  +.++++.++. .... +..... ..+.....++++..+ ++.+.   -+.+..++..
T Consensus       370 ~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          370 VVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             TEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             CEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            64  6677776664 2223 333321 224445555665544 33332   2566666665

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=87.98  E-value=16  Score=39.17  Aligned_cols=171  Identities=13%  Similarity=0.175  Sum_probs=93.3

Q ss_pred             eEEEEEcCCc--eeeEEecCC------CCCeEEEEEc---CC---CCCEEEEEe-CCCcEEEEEcCCceeeEeec-----
Q 001362          824 VISLYIVMTF--KTILTIMPP------SPTATSLAFN---PH---DNNVIAIGM-DDSTILIYNARSSEVISKLE-----  883 (1092)
Q Consensus       824 ~i~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---d~~~lasg~-~dg~v~iwd~~~~~~~~~l~-----  883 (1092)
                      +|.+||+.+.  +.++++.-+      ...+..+++.   |.   ++.++..+. ..+-|.|+|+.+++.-+.+.     
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5677888887  777765432      2456778877   21   133444444 45689999999886544331     


Q ss_pred             ---------cc----cCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCceeee---eeeecCCCCcCCCCCceEEE
Q 001362          884 ---------GH----SKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDGWGIQTC---RSLQTPDGVMTLAPSETHIQ  943 (1092)
Q Consensus       884 ---------~h----~~~V~~l~~spd----g~~l~s~s~Dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~l~  943 (1092)
                               |.    ...|..|++||+    ++.|....-.+ -++|.+.+.-....   ..++.. |.......-..++
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~  281 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA  281 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence                     11    246888999998    77777666555 35665543211100   011110 0000001223456


Q ss_pred             Ee-cCCCEEEE-EeCCcEEEEEcCC-c---eeeeeeccC-CCCCEEEEEEecCCCEEEEE
Q 001362          944 FH-KDQTRFLL-VHETHLAIYEAEE-L---TCLKQWFPI-SSVPISQATFSCDCRMVFTS  996 (1092)
Q Consensus       944 ~s-~dg~~la~-~~d~~i~lwd~~~-~---~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~  996 (1092)
                      +. .+|.+.++ ...+.|..|+..+ .   +....+... .-..+..+.+.++|.+.+++
T Consensus       282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred             EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence            65 56776666 4778899999875 1   111221211 22346667776676655544

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=87.34  E-value=36  Score=36.84  Aligned_cols=206  Identities=9%  Similarity=0.074  Sum_probs=93.2

Q ss_pred             CCEEEEEeCCCcEEEEEcCC-ceeeEee--ccccCCeEEEEEcC--CCCEEEEEeCCC----cEEEEEcCCCceeeeeee
Q 001362          856 NNVIAIGMDDSTILIYNARS-SEVISKL--EGHSKRVTGLVFSD--ALNILVSSGGDA----QIFVWDVDGWGIQTCRSL  926 (1092)
Q Consensus       856 ~~~lasg~~dg~v~iwd~~~-~~~~~~l--~~h~~~V~~l~~sp--dg~~l~s~s~Dg----~i~iwd~~~~~~~~~~~~  926 (1092)
                      ...|.+|+..| +.+++... ++.-..+  ......|.+|++.|  ++.+++.+ ..|    .|...+ +.++  ....+
T Consensus        22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~-D~G~--tW~~~   96 (394)
T 3b7f_A           22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSD-DGGG--NWTEA   96 (394)
T ss_dssp             CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEES-STTS--CCEEC
T ss_pred             CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeC-CCCC--CceEC
Confidence            44677788777 55555432 2211111  11235699999998  55555544 343    333322 2222  11111


Q ss_pred             ecC---CCCcC-----CCCCceEEEEec---CCCEEEEEeCCcEEEEEcCCceeeeeecc------------------CC
Q 001362          927 QTP---DGVMT-----LAPSETHIQFHK---DQTRFLLVHETHLAIYEAEELTCLKQWFP------------------IS  977 (1092)
Q Consensus       927 ~~~---~~~~~-----~~~~v~~l~~s~---dg~~la~~~d~~i~lwd~~~~~~~~~~~~------------------~h  977 (1092)
                      ...   .....     ....|.++++.|   .+.+.+.+..+.|...+ ..|+.-.....                  ..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~  175 (394)
T 3b7f_A           97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPD  175 (394)
T ss_dssp             SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred             CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCC
Confidence            111   00000     001477889986   45555555556554432 22222221110                  11


Q ss_pred             CCCEEEEEEecC-CCEEEEEECCCcEEEEEcCCCceEEeecc---ccccCCCCccCcccceEEEECCCCCCEEEEEeCCC
Q 001362          978 SVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILS---TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG 1053 (1092)
Q Consensus       978 ~~~v~~l~fs~d-g~~l~t~~~Dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg 1053 (1092)
                      ...+.+|.+.|. ...|+.+..++.|... .+.|+....+..   ..+++...........+++++|.++..+.++...|
T Consensus       176 ~~~i~~i~~d~~~~~~l~vg~~~ggl~~s-~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          176 GPKMHSILVDPRDPKHLYIGMSSGGVFES-TDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             CCEEEEEEECTTCTTCEEEEEETBEEEEE-SSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             CCceeEEEECCCCCCEEEEEECCCCEEEE-CCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            245788999873 3444445444443322 233433322221   01111110000112346788886567777776554


Q ss_pred             cEEEEeCCCCCCccccCC
Q 001362         1054 EVYVIEPNEPGDTWAVLP 1071 (1092)
Q Consensus      1054 ~v~~w~~~~~~~~~~~~~ 1071 (1092)
                         ||...+.+..|....
T Consensus       255 ---l~~s~D~G~tW~~~~  269 (394)
T 3b7f_A          255 ---IYRMDRREGVWKRIG  269 (394)
T ss_dssp             ---EEEEETTTTEEECGG
T ss_pred             ---EEEeCCCCCcceECC
Confidence               344445566676553

>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1

Probab=85.31  E-value=0.73  Score=41.19  Aligned_cols=56  Identities=14%  Similarity=0.307  Sum_probs=43.8

Q ss_pred             hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCccccc
Q 001362           72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHE  128 (1092)
Q Consensus        72 ~~~~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~  128 (1092)
                      ++|.|+-|.||||+..|..++|..|+.+.-..+... .+..++|+.+.......+++
T Consensus        33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~   88 (138)
T 2j4b_A           33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENN   88 (138)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCH
Confidence            899999999999999999999999999866666555 77777777776665554443

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=84.12  E-value=1.2  Score=40.97  Aligned_cols=57  Identities=12%  Similarity=0.208  Sum_probs=45.3

Q ss_pred             hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCccccc
Q 001362           72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHE  128 (1092)
Q Consensus        72 ~~~~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~  128 (1092)
                      ++|.|+-|.||||+..|...+|..|+++.-..+.....+..++|+.+.......+++
T Consensus        52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~  108 (156)
T 2nxp_A           52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNE  108 (156)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCG
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcH
Confidence            899999999999999999999999999865555444567778888777665554444

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=82.23  E-value=47  Score=33.88  Aligned_cols=183  Identities=10%  Similarity=0.010  Sum_probs=95.1

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec
Q 001362          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE  883 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~  883 (1092)
                      .|..++...+-. ++. .+|.+..|-......+..-..-...|..++...   ...+.-. ||.|+.|-....-.+..-.
T Consensus        64 ~i~~ia~G~~hs-~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~  137 (282)
T 3qhy_B           64 GVDAIAAGNYHS-LAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA  137 (282)
T ss_dssp             CCCEEEECSSEE-EEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred             CEEEEEeCCCEE-EEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence            455555543332 233 377788776553222111111124688888764   3444445 9999999765532221111


Q ss_pred             cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEE
Q 001362          884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE  963 (1092)
Q Consensus       884 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd  963 (1092)
                      .....|..++...+. .++ .. ||.|..|-........     .+....   ..|..++...+...++  .++.|+.|-
T Consensus       138 ~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gqlg-----~p~~~~---~~v~~i~~G~~hs~al--~~G~v~~wG  204 (282)
T 3qhy_B          138 EAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQTT-----VPAEAQ---SGVDDVAGGIFHSLAL--KDGKVIAWG  204 (282)
T ss_dssp             GGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTTS-----CCGGGG---SSEEEEEECSSEEEEE--ETTEEEEEE
T ss_pred             cCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCCC-----CceecC---CCeEEEEecCCEEEEE--ECCeEEEEE
Confidence            234567777765442 333 34 7999999766422111     111001   2466666655554444  689999997


Q ss_pred             cCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001362          964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus       964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
                      ....-.+.... .....|..++--.+- .++..  ||.|+.|=...
T Consensus       205 ~n~~gqlg~p~-~~~~~v~~i~~G~~h-~~al~--~g~v~~wG~n~  246 (282)
T 3qhy_B          205 DNRYKQTTVPT-EALSGVSAIASGEWY-SLALK--NGKVIAWGSSR  246 (282)
T ss_dssp             CCTTSTTCCCG-GGGSSCCEEEECSSC-EEEEE--TTEEEEESTTC
T ss_pred             CCCCCCCCCCc-ccCCCceEEEcCCCE-EEEEE--CCEEEEecCCC
Confidence            65432222111 113456666644433 33333  89999996544

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=80.50  E-value=59  Score=33.93  Aligned_cols=158  Identities=8%  Similarity=0.085  Sum_probs=90.5

Q ss_pred             CCCeeEEEEec---CCCEEEEEe-CCeEEEEEcCCceee-------EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 001362          802 QEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTI-------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI  870 (1092)
Q Consensus       802 ~~~v~~~~~s~---dg~~l~~~s-dg~i~iwd~~~~~~~-------~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i  870 (1092)
                      ...|.++..-+   +..+++..+ .|.++--.+......       ..+.. .+.+..+.... +...|+..+..|.+..
T Consensus        94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r  171 (327)
T 3uc1_A           94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR  171 (327)
T ss_dssp             TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred             CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence            34455544333   466777776 699998887653322       22333 34555555544 4567778889999888


Q ss_pred             EEcC--C---------ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee-----eeeeecCCCCcC
Q 001362          871 YNAR--S---------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-----CRSLQTPDGVMT  934 (1092)
Q Consensus       871 wd~~--~---------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~  934 (1092)
                      +...  .         |...-.+. ....|.++...+++..|+.++..|.++.-.+..-....     ...+...+..  
T Consensus       172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~--  248 (327)
T 3uc1_A          172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR--  248 (327)
T ss_dssp             EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT--
T ss_pred             EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC--
Confidence            8776  2         11112232 34567777777777789999999999988876532211     1111111101  


Q ss_pred             CCCCceEEEEe-cCCCEEEEEeCCcEEEEEcCC
Q 001362          935 LAPSETHIQFH-KDQTRFLLVHETHLAIYEAEE  966 (1092)
Q Consensus       935 ~~~~v~~l~~s-~dg~~la~~~d~~i~lwd~~~  966 (1092)
                        +.+..+... .+...++++.+|.+.-++...
T Consensus       249 --d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          249 --GRLVGALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             --CSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             --CeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence              134444333 334455557777777777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1092
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.004
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.004
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.003
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.0 bits (193), Expect = 3e-16
 Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 8/139 (5%)

Query: 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 435
           K+WD+                  +N + + P+G+           +L+      +     
Sbjct: 209 KLWDVREGMCRQT---FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265

Query: 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495
             +   G +  ++FS   + +  +   DD    VWDA+   R     GH   V  L    
Sbjct: 266 HDNIICG-ITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322

Query: 496 KENIHFIFSISVDGKIKAW 514
                 + + S D  +K W
Sbjct: 323 DGM--AVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.5 bits (184), Expect = 4e-15
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 11/150 (7%)

Query: 459 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK--AWLY 516
           ++   D + K+WD   G    +F GH + + ++C     N     + S D   +      
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRA 257

Query: 517 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
           D       +D    G T +++S +GR L +             W+  +        G   
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN----CNVWDALKADRAGVLAG--- 310

Query: 577 QHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606
             N VS +        +     D  +KIW+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.8 bits (182), Expect = 8e-15
 Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 10/164 (6%)

Query: 754 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 813
           +  V  +   P   L +S         +L+  R G        T +  +  +       N
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMCRQ----TFTGHESDINAICFFPN 237

Query: 814 DAYLFSASGG---VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 870
                + S      +            +        TS++F+     ++  G DD    +
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNV 296

Query: 871 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
           ++A  ++    L GH  RV+ L  +D    + +   D+ + +W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.3 bits (147), Expect = 2e-10
 Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 8/155 (5%)

Query: 851  FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 910
                D  +   G  D++  +++ R         GH   +  + F    N   +   DA  
Sbjct: 191  SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250

Query: 911  FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-HLAIYEAEELTC 969
             ++D+         S       +T       + F K     L  ++  +  +++A +   
Sbjct: 251  RLFDLRADQELMTYSHDNIICGIT------SVSFSKSGRLLLAGYDDFNCNVWDALKADR 304

Query: 970  LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004
                       +S    + D   V T   D  L I
Sbjct: 305  AGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.2 bits (139), Expect = 2e-09
 Identities = 40/293 (13%), Positives = 95/293 (32%), Gaps = 11/293 (3%)

Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
            +  + W  D  LL  A     + ++  +  +       I      V   A++     ++
Sbjct: 57  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSGNYVA 113

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
                +  +I       G+   S E  G   Y        + + I + S D     W  +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYL-SCCRFLDDNQIVTSSGDTTCALWDIE 172

Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +      +         ++ + + R   S       ++    W+  EG  ++T+ G    
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSG----ACDASAKLWDVREGMCRQTFTG---H 225

Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637
            + ++ + F    +      DD   +++D+   Q L T      +     + F+K+G LL
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285

Query: 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690
               ++    + +  +++         + +  L V         G  +  + +
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 22/144 (15%), Positives = 38/144 (26%), Gaps = 23/144 (15%)

Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
           QT     S   ++ F P  +           TG  D                        
Sbjct: 220 QTFTGHESDINAICFFPNGNAFA--------TGSDD----------ATCRLFDLRADQEL 261

Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
            T    +    +  V +S  G LL   Y      ++         +   +  H   V+ L
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCL 318

Query: 448 AFSAPCKQISVITCGDDKTIKVWD 471
             +     +   T   D  +K+W+
Sbjct: 319 GVTDDGMAV--ATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.8 bits (138), Expect = 3e-09
 Identities = 26/217 (11%), Positives = 66/217 (30%), Gaps = 10/217 (4%)

Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
           R +  +  H+  +  + +    + +  ++   D  + +WD+ T ++ ++     + V + 
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLL--VSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103

Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551
                 + +++    +D     +   +    V       G T               TS 
Sbjct: 104 AYA--PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161

Query: 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
              +  +   E+                 V  +         ++   D   K+WD+ +  
Sbjct: 162 GDTTCALWDIETGQQTTTFTG----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217

Query: 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
              T            ICF  NG   A  +++   ++
Sbjct: 218 CRQTFTGHESDINA--ICFFPNGNAFATGSDDATCRL 252

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 8e-06
 Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 11/130 (8%)

Query: 825 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKL 882
             L+ V       T         ++ F P + N  A G DD+T  +    A    +    
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSH 266

Query: 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 942
           +     +T + FS +  +L++   D    VWD           L   D  +      + +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDNRV------SCL 318

Query: 943 QFHKDQTRFL 952
               D     
Sbjct: 319 GVTDDGMAVA 328

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.5 bits (184), Expect = 4e-15
 Identities = 43/311 (13%), Positives = 86/311 (27%), Gaps = 65/311 (20%)

Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
           +  H   V  + F      +  ++  +D TIKVWD  TG    + +GH   V  +     
Sbjct: 13  LSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 497 ENIH----------------------------------------FIFSISVDGKIKAWLY 516
             +                                          I S S D  IK W  
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 517 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
            +      +         +  + +G  + SC   +     +  W  +    K   +  + 
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ----TVRVWVVATKECKAELREHRH 186

Query: 577 QHNSVS-----------------VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619
               +S                           +L+   D  IK+WD++    L T+   
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679
                   + F+  G  +   A++  +++ +      +         +  L  +  +   
Sbjct: 247 DNWVRG--VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304

Query: 680 GAGIANGSVSV 690
             G  + +V V
Sbjct: 305 VTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.8 bits (182), Expect = 7e-15
 Identities = 44/326 (13%), Positives = 94/326 (28%), Gaps = 55/326 (16%)

Query: 323 PKTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------- 370
           P+   +  + G  SP   + FHP   ++++  +      +WD  +G              
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63

Query: 371 ------------FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418
                                +           +     +V+ V   P+G  +  A    
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478
            ++++                H   V  +  +     I   +C +D+T++VW   T    
Sbjct: 124 TIKMWEVQ---TGYCVKTFTGHREWVRMVRPNQDGTLI--ASCSNDQTVRVWVVATKECK 178

Query: 479 YSFEGHGAPVYSLCPHAKENI------------------HFIFSISVDGKIKAWLYDSLG 520
                H   V  +    + +                    F+ S S D  IK W   +  
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238

Query: 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 580
             +           + + + G+ + SC      +  L  W+       +T        + 
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCA----DDKTLRVWDYKNKRCMKTLNA---HEHF 291

Query: 581 VSVVHFDTAKDQILAAGDDHVIKIWD 606
           V+ + F      ++    D  +K+W+
Sbjct: 292 VTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.2 bits (178), Expect = 2e-14
 Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 8/174 (4%)

Query: 742 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 801
            N  G  I + +++    +W     +          V   +          +++ T S  
Sbjct: 151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE- 209

Query: 802 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860
                     K   +L S S    I ++ V T   ++T++        + F+      I 
Sbjct: 210 -----TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFIL 263

Query: 861 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
              DD T+ +++ ++   +  L  H   VT L F      +V+   D  + VW+
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.1 bits (136), Expect = 4e-09
 Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 28/167 (16%)

Query: 806 PCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNP----------- 853
                +++   + S S    + +++V T +    +         +++ P           
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

Query: 854 --------HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 905
                        +  G  D TI +++  +   +  L GH   V G++F      ++S  
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266

Query: 906 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952
            D  + VWD      +  ++L   +  +      T + FHK     +
Sbjct: 267 DDKTLRVWDYKNK--RCMKTLNAHEHFV------TSLDFHKTAPYVV 305

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 3e-06
 Identities = 17/170 (10%), Positives = 54/170 (31%), Gaps = 9/170 (5%)

Query: 847  TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 906
            T + F+P   +V+    +D+TI +++  + +    L+GH+  V  + F  +  +      
Sbjct: 21   TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL------ 73

Query: 907  DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 966
                         +   +  +    +     + + +    +    +             +
Sbjct: 74   --LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 967  LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016
                 + F      +     + D  ++ +   D T+ +   +  E +  +
Sbjct: 132  TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (109), Expect = 1e-05
 Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 20/187 (10%)

Query: 871  YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 930
            +  R  E  + L GH   VT ++F    +++VS+  DA I VWD +       R+L+   
Sbjct: 3    WIPRPPEKYA-LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHT 59

Query: 931  GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC 990
                   S   I F                     +     +        +S  +   + 
Sbjct: 60   D------SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113

Query: 991  RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1050
              + ++  D T+ + E                   T   H     +       T  A   
Sbjct: 114  DHIVSASRDKTIKMWEVQTGYCVK-----------TFTGHREWVRMVRPNQDGTLIASCS 162

Query: 1051 TNGEVYV 1057
             +  V V
Sbjct: 163  NDQTVRV 169

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.5 bits (176), Expect = 6e-14
 Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 27/193 (13%)

Query: 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394
               ++   P     +  G+      +WD  +G  +   + +                  
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD--------- 255

Query: 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV---------GNVN 445
              SV  VV++ DG  +        V+L+     ++       ++             V 
Sbjct: 256 ---SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312

Query: 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----F 501
            +A +   + I  ++   D+ +  WD  +G+     +GH   V S+      ++      
Sbjct: 313 SVATTQNDEYI--LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

Query: 502 IFSISVDGKIKAW 514
             + S D K + W
Sbjct: 371 FATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.1 bits (175), Expect = 8e-14
 Identities = 44/398 (11%), Positives = 116/398 (29%), Gaps = 54/398 (13%)

Query: 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH-NSVSVVHFDTAKDQILAA 596
             + + +      +  + +++ +N +            L H + V  V F     + LA 
Sbjct: 22  DLDSQSVPDALKKQTNDYYIL-YNPALPREIDVELHKSLDHTSVVCCVKFS-NDGEYLAT 79

Query: 597 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656
           G +   +++ ++   L+  +       ++P                          E+ +
Sbjct: 80  GCNKTTQVYRVSDGSLVARLSDDSAANKDP--------------------------ENLN 113

Query: 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716
             ++      +R +  +P     G  +A G+        +    +I +  +   +    L
Sbjct: 114 TSSSPSSDLYIRSVCFSP----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 169

Query: 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776
              PS  + +              T               V +     +     S +   
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229

Query: 777 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-------------GG 823
           +V           +    + + +  +++V     +++   + S S               
Sbjct: 230 RVWD-SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288

Query: 824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883
                   +    +T +       S+A    ++  I  G  D  +L ++ +S   +  L+
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347

Query: 884 GHSKRVTGLVFSDAL------NILVSSGGDAQIFVWDV 915
           GH   V  +  ++        N+  +  GD +  +W  
Sbjct: 348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.7 bits (161), Expect = 4e-12
 Identities = 41/337 (12%), Positives = 104/337 (30%), Gaps = 26/337 (7%)

Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
              ++ +S    + F       L  G N   T ++ V+    L  R              
Sbjct: 56  HKSLDHTSVVCCVKFSN-DGEYLATGCN-KTTQVYRVSD-GSLVARLSDDSAANKDPENL 112

Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
            T+      + +  V +SPDG  L       +++++         +++ +       +  
Sbjct: 113 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE-----NRKIVMILQGHEQDIY 167

Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507
           +         +++   D+T+++WD  TG  + +                    +I + S+
Sbjct: 168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK--YIAAGSL 225

Query: 508 DGKIKAWLYDSLGARVDYDAPGL-------GCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
           D  ++ W  ++       D+              + ++ +G+ + S    +  + + ++ 
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285

Query: 561 NESEGAIKRTYQGLQLQH-----NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
             ++   K    G          + V  V      + IL+   D  +  WD      L  
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 345

Query: 616 IDAGGG----LPENPRICFNKNGTLLAVIANENRIKI 648
           +         +             + A  + + + +I
Sbjct: 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 1e-07
 Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 17/171 (9%)

Query: 851  FNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-------GHSKRVTGLVFSDALNILVS 903
             +P D   IA G  D  + ++++ +  ++ +L+       GH   V  +VF+     +VS
Sbjct: 212  VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271

Query: 904  SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH----IQFHKDQTRFLLVHETH- 958
               D  + +W++     ++                       +   ++    L   +   
Sbjct: 272  GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331

Query: 959  LAIYEAEELTCLKQW----FPISSVPISQ-ATFSCDCRMVFTSFVDGTLSI 1004
            +  ++ +    L         + SV ++  ++   +  +  T   D    I
Sbjct: 332  VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 4e-06
 Identities = 44/345 (12%), Positives = 95/345 (27%), Gaps = 43/345 (12%)

Query: 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396
           P  +D         L         L++            +  D+     L  T+      
Sbjct: 18  PFLLDLDSQSVPDALKKQTNDYYILYNPALP--------REIDVELHKSLDHTS------ 63

Query: 397 VSVNRVVWSPDGSLLGVAYSKHIV--------QLYAYHGGSDARQQLEI------DAHVG 442
             V  V +S DG  L    +K            +      S A +  E        +   
Sbjct: 64  -VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122

Query: 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 502
            +  + FS   K +   T  +D+ I++WD          +GH   +Y        +   +
Sbjct: 123 YIRSVCFSPDGKFL--ATGAEDRLIRIWDIENRKIVMILQGHEQDIY--SLDYFPSGDKL 178

Query: 503 FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562
            S S D  ++ W   +    +         T      +G+ + +    +    +  E   
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
               +    +      +SV  V F      +++   D  +K+W++      +        
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 623 PENP----------RICFNKNGTLLAVIANENRIKILETPESNSV 657
                          +   +N   +   + +  +   +    N +
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 4e-04
 Identities = 45/295 (15%), Positives = 100/295 (33%), Gaps = 21/295 (7%)

Query: 782  LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP 841
            LY P    +  V      +    V C   S +  YL +       +Y V     +  +  
Sbjct: 42   LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSD 101

Query: 842  PSPTA------------------TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883
             S                      S+ F+P D   +A G +D  I I++  + +++  L+
Sbjct: 102  DSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQ 160

Query: 884  GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943
            GH + +  L +  + + LVS  GD  + +WD+         S++     + ++P +    
Sbjct: 161  GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 220

Query: 944  FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 1003
                  R + V ++    +  E L    +        +    F+ D + V +  +D ++ 
Sbjct: 221  AAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 1004 IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF-AVGLTNGEVYV 1057
            +    N   +    +        + +      ++    +  ++   G  +  V  
Sbjct: 280  LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 31/221 (14%), Positives = 58/221 (26%), Gaps = 7/221 (3%)

Query: 841  PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS----KLEGHSKRVTGLVFSD 896
             P P    L  +            +   ++YN      I     K   H+  V  + FS+
Sbjct: 14   KPIPPF-LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN 72

Query: 897  ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
                L + G +    V+ V    +    S  +         + +         R +    
Sbjct: 73   DGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 131

Query: 957  THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016
                +    E   ++ W   +   +               F  G   +  + +  V+   
Sbjct: 132  DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191

Query: 1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1057
            L T      T  +      +A  P      A G  +  V V
Sbjct: 192  LRTGQ-CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.7 bits (166), Expect = 1e-12
 Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 5/184 (2%)

Query: 847  TSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKRVTGLVFSDALNILVSS 904
            +  A+N  D   IAI  ++  + IY    +    + +L+ H+ +VTG+ ++   N +V+ 
Sbjct: 11   SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 905  GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 964
            G D   +VW + G   +    +   +          + +     +       +     + 
Sbjct: 70   GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS--RVISICYFEQE 127

Query: 965  EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1024
             +    K         +    +  +  ++     D    I  A   EV+ R   T +   
Sbjct: 128  NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187

Query: 1025 TTSC 1028
                
Sbjct: 188  MPFG 191

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.6 bits (158), Expect = 9e-12
 Identities = 38/257 (14%), Positives = 73/257 (28%), Gaps = 20/257 (7%)

Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
            ++   W+ D + + +  + H V +Y   G     Q  E+  H G V  + ++    +I 
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRI- 66

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            +TCG D+   VW     +   +         + C     N       S    I    ++
Sbjct: 67  -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 518 SLGARVDYDAPGLGCTRMAYSANGR---------------RLFSCGTSKEGESFLVEWNE 562
                               S +                 R+FS    +  E        
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
           S+                V  V F     ++     D  + + D +K   + T+ +    
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244

Query: 623 PENPRICFNKNGTLLAV 639
                + F    +L+A 
Sbjct: 245 -PLLAVTFITESSLVAA 260

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 35/284 (12%), Positives = 75/284 (26%), Gaps = 25/284 (8%)

Query: 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW----DIGACSMLFKTAL 391
                           VG+      +         ++           + +      + L
Sbjct: 96  RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 155

Query: 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451
           +          ++S     +     +                  E  +  G V+ + FSA
Sbjct: 156 LAAGSCDFKCRIFSAYIKEV----EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 211

Query: 452 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 511
              ++       D T+ + DA       +      P+ ++    + ++    +   D   
Sbjct: 212 NGSRV--AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSL---VAAGHDCFP 266

Query: 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571
             + YDS   ++ +        + +      R       K+  S        EG+     
Sbjct: 267 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS--------EGSAAAGA 318

Query: 572 QGLQLQHNSVSVVHF----DTAKDQILAAGDDHVIKIWDMNKVQ 611
               L  NSVS +           Q    G D  + IWD+  ++
Sbjct: 319 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 11/114 (9%), Positives = 29/114 (25%), Gaps = 6/114 (5%)

Query: 807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 866
                   + + +       L+   +    L+           +            +D  
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307

Query: 867 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVD 916
                +A +   +     H   V+ +          +   ++G D  + +WDV 
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 0.002
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQIS--VITCGDDKTIKVWDAVTGSRT 478
           GS A        H  +V+ ++  +  K       T G D  + +WD  +    
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.1 bits (159), Expect = 6e-12
 Identities = 48/365 (13%), Positives = 111/365 (30%), Gaps = 32/365 (8%)

Query: 568 KRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625
           + T +G    H +  ++ + F+   + ++   DD +I+++D    + L  +    G    
Sbjct: 5   RTTLRG----HMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58

Query: 626 PRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 684
             + +   G L++       R+  ++      V      +     +           G  
Sbjct: 59  --LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116

Query: 685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 744
           + ++ V + PKE   P+         E + PL     E     +          R    +
Sbjct: 117 DNTLHVWKLPKESSVPDHG------EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170

Query: 745 GGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT------ 797
           G   +     N + +      +    LS              R        DTT      
Sbjct: 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230

Query: 798 -----DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 852
                    Q       L +       ++    S+                   +++   
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290

Query: 853 PHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 911
              +N++  G ++    IYN RS +++ + +   + ++  + F     ++ +   D Q F
Sbjct: 291 YVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSF 348

Query: 912 VWDVD 916
           +  +D
Sbjct: 349 LEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (138), Expect = 3e-09
 Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKEN 498
           H  N++ +        I  +  G +    +++  +G   ++        ++S+    K  
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335

Query: 499 IHFIFSISVDGKIKAWLYD 517
              + ++  DG+    + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 9/149 (6%)

Query: 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 906
           T L F   ++N +  G DD  I +Y++ + + + +L GH   V  L ++    ILVS   
Sbjct: 17  TCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGST 72

Query: 907 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 966
           D  + VWD+                          +++   +       +  L +++  +
Sbjct: 73  DRTVRVWDIKKGCCTHVFEGHNSTVRCL-----DIVEYKNIKYIVTGSRDNTLHVWKLPK 127

Query: 967 LTCLKQWFPISSVPISQATFSCDCRMVFT 995
            + +         P+   T   +   V  
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGV 156

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 8/151 (5%)

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
           VIT  DDK I+V+D++         GH   V++L      +   + S S D  ++ W   
Sbjct: 26  VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA---HGGILVSGSTDRTVRVWDIK 82

Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
                  ++        +         +    S++    +  W   + +    +     +
Sbjct: 83  KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV--WKLPKESSVPDHGE---E 137

Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608
           H+   V H        +     H+  +  ++
Sbjct: 138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 42/323 (13%), Positives = 88/323 (27%), Gaps = 22/323 (6%)

Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
             L        ++ +      L+   T+                             + +
Sbjct: 47  LQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 105

Query: 388 KTALVRDPGVSVNRV-VWS-PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN 445
           K       G   N + VW  P  S +     +H   L  +    +      +  H+ +V 
Sbjct: 106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165

Query: 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 505
                       V++   D T+ VWD       Y   GH   +Y              S 
Sbjct: 166 T----VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY--STIYDHERKRCISA 219

Query: 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565
           S+D  I+ W           +   +   +   +  G    S        +          
Sbjct: 220 SMDTTIRIWDL--------ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN 271

Query: 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625
              R +       ++++  +     D IL +G ++   I+++   +L+            
Sbjct: 272 DYSRKFSYHHTNLSAITTFYVS---DNILVSGSENQFNIYNLRSGKLVHANILKDADQIW 328

Query: 626 PRICFNKNGTLLAVIANENRIKI 648
             + F    TL+A +  + +  +
Sbjct: 329 -SVNFK-GKTLVAAVEKDGQSFL 349

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462
               + + +       ++++Y        +  L++  H G V  L ++       +++  
Sbjct: 18  CLQFEDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGGI---LVSGS 71

Query: 463 DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
            D+T++VWD   G  T+ FEGH + V  L     +NI +I + S D  +  W
Sbjct: 72  TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 2e-10
 Identities = 46/369 (12%), Positives = 116/369 (31%), Gaps = 42/369 (11%)

Query: 560 WNESEGAIKRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
           W   E    +  +G    H+   ++ + F    ++I++  DD+ +K+W     + L T+ 
Sbjct: 1   WRRGELKSPKVLKG----HDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLV 54

Query: 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677
                             ++   + +  +K+        +      +  +R + ++    
Sbjct: 55  G----HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 110

Query: 678 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 737
           V+G+  A   V   E  +        V A    + +       +    +           
Sbjct: 111 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV----------- 159

Query: 738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797
            ++        +  L  +   +          +S    T +  R++    G         
Sbjct: 160 -KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSI--RVWDVETGNCIHTLTGH 216

Query: 798 DSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 856
            S          +   D  L S  +   + ++ + T + + T+  P+   +++     + 
Sbjct: 217 QS------LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270

Query: 857 NVIAIGMDDSTILIYNARSSEVISKL-----EGHSKRVTGLVFSDALNILVSSGGD---- 907
           N +    DD T+ +++ ++ E I  L      G    V  +  S+   +      +    
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330

Query: 908 AQIFVWDVD 916
            ++ V D D
Sbjct: 331 TKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 3e-09
 Identities = 33/245 (13%), Positives = 69/245 (28%), Gaps = 32/245 (13%)

Query: 429 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
            + +    +  H  +V        C    +++  DD T+KVW AVTG    +  GH   V
Sbjct: 4   GELKSPKVLKGHDDHVIT-CLQ-FCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60

Query: 489 YSLC-----PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543
           +S         +      +   + +            + V                   R
Sbjct: 61  WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120

Query: 544 LFSCGTSKEGESF---------------LVEWNESEGAIK-----RTYQGLQLQHNSVSV 583
           ++   T +                     V     +  +K            LQ ++  V
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180

Query: 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643
                    +++   D  I++WD+     + T+       ++          +L     +
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG----HQSLTSGMELKDNILVSGNAD 236

Query: 644 NRIKI 648
           + +KI
Sbjct: 237 STVKI 241

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 3e-09
 Identities = 55/309 (17%), Positives = 108/309 (34%), Gaps = 31/309 (10%)

Query: 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407
             ++ G++     +W   +G+   +R       G  S   +  ++          VW+ +
Sbjct: 28  NRIVSGSDDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 85

Query: 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS---------- 457
                     H   +   H           DA +   +          +           
Sbjct: 86  TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 145

Query: 458 ----VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKA 513
               V++   D  +KVWD  T +  ++ +GH   VYSL          + S S+D  I+ 
Sbjct: 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI----HVVSGSLDTSIRV 201

Query: 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573
           W  ++      +   G              L S       +S +  W+   G   +T QG
Sbjct: 202 WDVET--GNCIHTLTGHQSLTSGMELKDNILVSG----NADSTVKIWDIKTGQCLQTLQG 255

Query: 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---VQLLTTIDAGGGLPENPRICF 630
                ++V+ + F+  K+ ++ + DD  +K+WD+     ++ L T+++GG      RI  
Sbjct: 256 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313

Query: 631 NKNGTLLAV 639
           +    + AV
Sbjct: 314 SNTKLVCAV 322

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 1e-06
 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 13/158 (8%)

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
           V++   D +I+VWD  TG+  ++  GH +    +        + + S + D  +K W   
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD----NILVSGNADSTVKIWDIK 245

Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +         P    + +      +       S +G   L  W+   G   R    L+  
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKL--WDLKTGEFIRNLVTLESG 302

Query: 578 H--NSVSVVHFDTAKDQILAAGDDH----VIKIWDMNK 609
                V  +     K        +      + + D + 
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 6e-04
 Identities = 29/204 (14%), Positives = 60/204 (29%), Gaps = 27/204 (13%)

Query: 854  HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 913
               N I  G DD+T+ +++A + + +  L GH+  V      D  NI++S   D  + VW
Sbjct: 25   FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVW 82

Query: 914  DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQW 973
            + +           T          +  +   +D T  +   E              +  
Sbjct: 83   NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE------------TGQCL 130

Query: 974  FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1033
              +     +      D R V +   D  + + +                      L  + 
Sbjct: 131  HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT-------------LQGHT 177

Query: 1034 HAIAAHPLKPTQFAVGLTNGEVYV 1057
            + + +          G  +  + V
Sbjct: 178  NRVYSLQFDGIHVVSGSLDTSIRV 201

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 60.9 bits (146), Expect = 3e-10
 Identities = 36/361 (9%), Positives = 85/361 (23%), Gaps = 29/361 (8%)

Query: 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE- 643
                + ++     + + + D+    +  +          P       +     V+ N  
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNNHY 61

Query: 644 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG----IANGSVSVNEDPKEDVK 699
             I  ++     +   A + S             ++  G              D      
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 700 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 759
           P + V +       KP+   P   Q  L+ +                       +     
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRA---------------ADDGSLYVAGPDIY 166

Query: 760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 819
                    T++             P     +         S                 +
Sbjct: 167 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 226

Query: 820 ASGGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878
                     + T KT        +    +   +P D N I      + +  Y+ +  ++
Sbjct: 227 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY--GVLNRLAKYDLKQRKL 284

Query: 879 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 938
           I            + F    + L   G    + V++ D    +  ++++ P G M+    
Sbjct: 285 IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL--EKVKNIKLPGGDMSTTTP 341

Query: 939 E 939
           +
Sbjct: 342 Q 342

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.0 bits (128), Expect = 4e-08
 Identities = 35/319 (10%), Positives = 76/319 (23%), Gaps = 34/319 (10%)

Query: 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGAC 383
                 ++     P +    P   T  ++  + GD    D+++ +  F  N         
Sbjct: 29  TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE-- 86

Query: 384 SMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-----------R 432
                       G S+     SPDG  +    +        Y                  
Sbjct: 87  -----------VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 135

Query: 433 QQLEIDAHVGNVNDLAFSAPCKQI------SVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486
           + +        V  +  +              +     K          +R         
Sbjct: 136 KPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 195

Query: 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546
             +       E              +      L           G T     A+   L+ 
Sbjct: 196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 255

Query: 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAGDDHVI 602
            G     +   +    +  A     Q   ++     ++   V FD   D++   G  + +
Sbjct: 256 TGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDL 315

Query: 603 KIWDMNKVQLLTTIDAGGG 621
            +++ + ++ +  I   GG
Sbjct: 316 AVFNPDTLEKVKNIKLPGG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 0.003
 Identities = 13/167 (7%), Positives = 40/167 (23%), Gaps = 18/167 (10%)

Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF---------KVWDIG 381
           +   +        P         +   +  +    +  K   ++             D+ 
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238

Query: 382 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
                 +     D        + SP      +    + +  Y         + ++     
Sbjct: 239 TGKTHTQE--FADLTELYFTGLRSPKDPNQ-IYGVLNRLAKYDLKQR----KLIKAANLD 291

Query: 442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
                +AF     +  +   G    + V++  T  +  + +  G  +
Sbjct: 292 HTYYCVAFDKKGDK--LYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 20/186 (10%), Positives = 43/186 (23%), Gaps = 14/186 (7%)

Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 505
            A  A  + +  I       + V D  + +   S          +          ++   
Sbjct: 2   PALKAGHEYM--IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV-LN 58

Query: 506 SVDGKIKAW------LYDSLGARVDYDAPGLGCTRMAYSANGRRLF--SCGTSKEGESFL 557
           +  G I                       G      A S +G+ ++     T +  + ++
Sbjct: 59  NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118

Query: 558 VEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           V+    E          +          V+   A D          I   D+   +    
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA 178

Query: 616 IDAGGG 621
           +     
Sbjct: 179 LPLRNW 184

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 45/304 (14%), Positives = 83/304 (27%), Gaps = 44/304 (14%)

Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------------- 370
               E S     + +       ++ G       +WD N+ +                   
Sbjct: 9   HCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 371 --FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 428
              I       +    +     L          +    +  ++        + ++     
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 429 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
           +D   +  +  H   VN + F          +   D+TIKVW+  T     +  GH   +
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIV----SASGDRTIKVWNTSTCEFVRTLNGHKRGI 181

Query: 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548
             L          + S S D  I+ W  D           G          + +R+ S  
Sbjct: 182 ACLQYRD----RLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRFDNKRIVSG- 234

Query: 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQH------NSVSVVHFDTAKDQILAAGDDHVI 602
                +  +  W+       R   G             V  + FD  + QI+++  D  I
Sbjct: 235 ---AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTI 289

Query: 603 KIWD 606
            IWD
Sbjct: 290 LIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 32/209 (15%), Positives = 61/209 (29%), Gaps = 20/209 (9%)

Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 499
               V  L +        +++   D TIK+WD  T        GH   V  L    +  I
Sbjct: 14  TSKGVYCLQYDDQ----KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69

Query: 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559
                 +V                  +A               +  S             
Sbjct: 70  TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV---------- 119

Query: 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619
           W+ +            L  +  +V   D     I++A  D  IK+W+ +  + + T++  
Sbjct: 120 WDMAS--PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG- 176

Query: 620 GGLPENPRICFNKNGTLLAVIANENRIKI 648
               +    C      L+   +++N I++
Sbjct: 177 ---HKRGIACLQYRDRLVVSGSSDNTIRL 202

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 5e-06
 Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 15/119 (12%)

Query: 806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 864
               L   D  + S S    I L+ +     +  +               DN  I  G  
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGAY 236

Query: 865 DSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
           D  I +++  ++           +  L  HS RV  L F +    +VSS  D  I +WD
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 27/211 (12%), Positives = 62/211 (29%), Gaps = 27/211 (12%)

Query: 847  TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 906
              L +   D+  I  G+ D+TI I++  + E    L GH+  V  L + + + I      
Sbjct: 19   YCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII------ 69

Query: 907  DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 966
                     D        +       +             +        +  +A+++   
Sbjct: 70   -----TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 967  LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1026
             T +     +     +      D + + ++  D T+ +   S  E               
Sbjct: 125  PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR------------ 172

Query: 1027 SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1057
              L+ +   IA    +      G ++  + +
Sbjct: 173  -TLNGHKRGIACLQYRDRLVVSGSSDNTIRL 202

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (138), Expect = 2e-09
 Identities = 32/322 (9%), Positives = 84/322 (26%), Gaps = 25/322 (7%)

Query: 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394
           +    + + P  + +                 G+  F+R     D G   +         
Sbjct: 18  NFTTHLSYDPTTNAIA-------------YPCGKSAFVR---CLDDGDSKVPPVVQFTGH 61

Query: 395 PGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYHGGSDARQQL-----EIDAHVGNVNDL 447
               V  V +SP      L        V ++ +    ++         E     G ++D+
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507
           ++    +++ V+  G D         +G+      GH   + +        +  +     
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 508 DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567
              +         +  D      G        +         +   +  +  ++   G  
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-GEFVITVGSDRKISCFDGKSGEF 240

Query: 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627
            +  +  Q                +    G D  I++WD+   + +           N +
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300

Query: 628 ICFNKNGT-LLAVIANENRIKI 648
           +     G   +  ++ +  +  
Sbjct: 301 VGVVATGNGRIISLSLDGTLNF 322

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 458 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
             T G D TI+VWD  T    + ++ +        +   A  N   I S+S+DG +  +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 28/168 (16%), Positives = 50/168 (29%), Gaps = 10/168 (5%)

Query: 835 TILTIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGH-S 886
           ++  I+PP P       T L+++P  N +       + +   +   S+V  + +  GH S
Sbjct: 4   SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63

Query: 887 KRVTGLVFSDALN--ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 944
             VT + FS       L S     ++ VW            +        LA   + I +
Sbjct: 64  SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123

Query: 945 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 992
             +  R  +V E                   +S               
Sbjct: 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 5e-06
 Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 852 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL---VFSDALNILVSSGGDA 908
           +  D+   A    D+TI +++  +S+ + K     +++      V +     ++S   D 
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 909 QIFVWDV 915
            +  +++
Sbjct: 319 TLNFYEL 325

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 7e-09
 Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 9/117 (7%)

Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
            +  + + P G       +  +          +   + ++  H   V  L F+   K   
Sbjct: 226 QIFSLGYCPTGEW----LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF- 280

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
            ++ G D  +  W    G+  +      + V S      +   +I + S D K   +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK--YIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 9e-09
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 848 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 907
           SL F             D+ +  +       I +    S  V     S     +V+  GD
Sbjct: 270 SLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGD 327

Query: 908 AQIFVWDV 915
            +  V++V
Sbjct: 328 KKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 31/275 (11%), Positives = 73/275 (26%), Gaps = 19/275 (6%)

Query: 376 KVWDIGACSMLFKTALVRDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 433
           KVWDI         + +        +      PDG  L V      + ++     +   +
Sbjct: 75  KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134

Query: 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
                +                 S  + G+     + +     +T   +  G    + C 
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCI 189

Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
               +   +++  +D  +++W          +D        + Y   G  L     S   
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNV 248

Query: 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613
           E   V               L L  + V  + F       ++ G D+++  W       +
Sbjct: 249 EVLHVNKP--------DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300

Query: 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
                   +        + +   +   + + +  +
Sbjct: 301 FQSKESSSV---LSCDISVDDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 461
           + ++  G         +++  +    G      +       +V     S   K I  +T 
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYG----ASIFQSKESSSVLSCDISVDDKYI--VTG 324

Query: 462 GDDKTIKVWD 471
             DK   V++
Sbjct: 325 SGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 1e-05
 Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 14/111 (12%)

Query: 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
           F+ A+   P  S +    + DG +  V +    +      G     +Q+    H   V  
Sbjct: 3   FQGAMGSKPAYSFH---VTADGQMQPVPFPPDAL---IGPGIPRHARQINTLNHGEVVCA 56

Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHGAPVYSLC 492
           +  S P + +     G    +KVWD                     + S  
Sbjct: 57  VTISNPTRHVY---TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 5/129 (3%)

Query: 864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 923
            D+ I     R +  I+ L  H + V  +  S+    + + GG   + VWD+   G ++ 
Sbjct: 30  PDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSP 87

Query: 924 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQ 983
            S                 +   D    ++  E              +    ++S   + 
Sbjct: 88  VSQLDCLNRDNYI---RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144

Query: 984 ATFSCDCRM 992
              +     
Sbjct: 145 YALAISPDS 153

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 8/75 (10%)

Query: 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591
              + ++  G+   S G        L  W    GA     +      +SV          
Sbjct: 268 VLSLKFAYCGKWFVSTGKDN----LLNAWRTPYGASIFQSKE----SSSVLSCDISVDDK 319

Query: 592 QILAAGDDHVIKIWD 606
            I+    D    +++
Sbjct: 320 YIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 3/68 (4%)

Query: 806 PCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 864
                +    +  S     +++ +      +I      S    S   +  D+  I  G  
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS-VLSCDISV-DDKYIVTGSG 326

Query: 865 DSTILIYN 872
           D    +Y 
Sbjct: 327 DKKATVYE 334

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (131), Expect = 1e-08
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDAL 898
           +   P          + +++A G  D+ I IY+ +   ++I  L  H   V  L++    
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP- 269

Query: 899 NILVSSGGDAQIFVWDV 915
           + LVSSG DA I  W+V
Sbjct: 270 STLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)

Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
           I  H   +  L  +       +I+   D  I  W + +       + H   + SL     
Sbjct: 9   ISGHNKGITALTVN------PLISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57

Query: 497 ENIHFIFS 504
           +    I  
Sbjct: 58  QEYSSISW 65

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 4/57 (7%)

Query: 459 ITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
            T   D  I ++      +       H   V +L          + S   D  IK W
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP---STLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473
           ++AH   VN+L +  P     +++ G D  IK W+ V
Sbjct: 254 LNAHKDGVNNLLWETPST---LVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916
           EV+  + GH+K +T L  +     L+S   D +I  W   
Sbjct: 4   EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS 39

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 28/248 (11%), Positives = 61/248 (24%), Gaps = 34/248 (13%)

Query: 847  TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 906
            T+L  NP     +  G  D  I+ +++ S       + HS  +  L  S A      S  
Sbjct: 17   TALTVNP-----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEYSSISWD 66

Query: 907  DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLA------ 960
            D                +     +   T   +              ++    L       
Sbjct: 67   DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126

Query: 961  ------------------IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 1002
                              +++  +L              S  + S     +    V G +
Sbjct: 127  SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 186

Query: 1003 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062
             +++  + EV+    +    +                 ++    A G  +  +++     
Sbjct: 187  LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246

Query: 1063 PGDTWAVL 1070
            P      L
Sbjct: 247  PMKIIKAL 254

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.0 bits (128), Expect = 4e-08
 Identities = 36/329 (10%), Positives = 83/329 (25%), Gaps = 22/329 (6%)

Query: 590 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKI 648
           +D ILA      + + D  K+ +   I      P          G +     N+   +  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708
           ++                   L    +ST      +    +++ D K     E  V  E 
Sbjct: 61  IDL-------------VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL 107

Query: 709 KSEV-EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767
                +    A           +     +I+ L +   G  ++     G  L    P   
Sbjct: 108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY---GLGRDLHVMDPEAG 164

Query: 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISL 827
             +  +         Y             +               + A   +   G++++
Sbjct: 165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224

Query: 828 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 887
            +      +  +        S A NP            + +  ++   +  I ++     
Sbjct: 225 DLETGEMAMREVRIMDVFYFSTAVNPAKT---RAFGAYNVLESFDLEKNASIKRVP-LPH 280

Query: 888 RVTGLVFSDALNILVSSGGDAQIFVWDVD 916
               +  S   + +   G    +  +D +
Sbjct: 281 SYYSVNVSTDGSTVWLGGALGDLAAYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 26/300 (8%), Positives = 75/300 (25%), Gaps = 29/300 (9%)

Query: 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQ 433
            V D    ++  K   + D G +    + +P G +       S+ +V++    G +  R 
Sbjct: 14  VVIDTEKMAVD-KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72

Query: 434 QLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492
            L             A S   K +++        +  ++              +   +  
Sbjct: 73  DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132

Query: 493 PHAK-------ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545
              +        +   ++ +  D  +      +L       +                  
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 546 SCGTSKEGESFLVEWNESEGAIKRTYQGL-------------QLQHNSVSVVHFDTAKDQ 592
                     +    +           GL             +++   V          +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKILET 651
             A G  +V++ +D+ K   +  +            +  + +G+ + +      +   + 
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHS----YYSVNVSTDGSTVWLGGALGDLAAYDA 308

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 6e-05
 Identities = 33/314 (10%), Positives = 79/314 (25%), Gaps = 40/314 (12%)

Query: 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFK 388
           T+ +   +PM     P                  D+ +G+ L   +              
Sbjct: 28  TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---------- 77

Query: 389 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--------SDARQQLEIDAH 440
                +   S+     SPDG  L +  S   ++L  +           ++   + +    
Sbjct: 78  ----EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133

Query: 441 VGNVNDLAFS-------APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
              +  LA++          + + V+       ++     +       +     V++   
Sbjct: 134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE 193

Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
            +       ++   D           G     D                  FS   +   
Sbjct: 194 SSGVMATPFYTARKDIDPADPTAYRTGLLT-MDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 554 ------ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607
                  + L  ++  + A  +         +S   V+  T    +   G    +  +D 
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRV----PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308

Query: 608 NKVQLLTTIDAGGG 621
             ++    +D  G 
Sbjct: 309 ETLEKKGQVDLPGN 322

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 13/165 (7%), Positives = 40/165 (24%), Gaps = 12/165 (7%)

Query: 458 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515
           ++       + V D    +  +  +    G                  +++    +    
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLVKID 62

Query: 516 YDSLGARVDYDAP-----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570
             +       D              A S +G+ L    +    E    E   +  A+   
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 571 YQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
               +         ++++ +     ++   G D  +   +   + 
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV 167

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 0.003
 Identities = 15/164 (9%), Positives = 44/164 (26%), Gaps = 9/164 (5%)

Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390
               S        P    +     + G        + + +   +   +  G  +M  +T 
Sbjct: 170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229

Query: 391 ---LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
              +     + V     + + +      + ++++ +           ++      +   +
Sbjct: 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN----ASIKRVPLPHSYYSV 285

Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
             S     +     G    +  +DA T  +    +  G    SL
Sbjct: 286 NVSTDGSTV--WLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 4e-08
 Identities = 44/337 (13%), Positives = 84/337 (24%), Gaps = 32/337 (9%)

Query: 313 SFGETS-FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF 371
            F +T+ F   P+T          + + +   P    +     N        V S     
Sbjct: 2   EFSQTALFPSLPRTA-------RGTAVVLGNTPAGDKI--QYCNGTSVYTVPVGSLTDTE 52

Query: 372 IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA 431
           I                     +          SP G           V+++     +  
Sbjct: 53  I-------------------YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93

Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
            +   I    G V D        +         +            +       A   + 
Sbjct: 94  LKT-TIPVFSGPVKD-ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151

Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551
                     I S S D  +  +       +  +         + Y+ +G    S G   
Sbjct: 152 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 211

Query: 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
               +        G  +           SV  + +     +I +A  D  IKIW++  ++
Sbjct: 212 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 271

Query: 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
           +  TI  G  + E+ ++        L  I+    I  
Sbjct: 272 VEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.9 bits (117), Expect = 9e-07
 Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 7/119 (5%)

Query: 838 TIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892
            + P  P     TA  L   P   + I      S +      S         HS + T  
Sbjct: 7   ALFPSLPRTARGTAVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVA 64

Query: 893 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951
             S +     S      + +WD          ++    G +     ++  +        
Sbjct: 65  KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 852 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSGGDA 908
              D   IA    D TI I+N  + +V   +   ++   +  G++++     LVS   + 
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK--QALVSISANG 303

Query: 909 QIFVWDVD 916
            I   + +
Sbjct: 304 FINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.6 bits (111), Expect = 4e-06
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 7/60 (11%)

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAW 514
           + +   DKTIK+W+  T     +             +          + SIS +G I   
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINFV 308

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.7 bits (124), Expect = 9e-08
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKEN 498
           H   +  L+ SA  K +   +   +  I  WD  TG     F + H   +  +   +K +
Sbjct: 11  HNKAITALSSSADGKTL--FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68

Query: 499 IHFIFS 504
           +  +  
Sbjct: 69  LFTVSW 74

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 4e-05
 Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSG 905
           T+L+ +  D   +     +  I  ++  +        + H+  +TG+  +     L +  
Sbjct: 16  TALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVS 73

Query: 906 GDAQIFVWDVDGWGIQTC 923
            D  + V    G G+ + 
Sbjct: 74  WDDHLKVVPAGGSGVDSS 91

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.1 bits (99), Expect = 1e-04
 Identities = 12/69 (17%), Positives = 21/69 (30%)

Query: 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936
            +     GH+K +T L  S     L S+  +  I  WD+                +  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 937 PSETHIQFH 945
            +     F 
Sbjct: 63  TTSKGDLFT 71

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 851 FNPHDNNVIAIGMDDSTILIYNAR--SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA 908
               DN  +A G  D++++++N    S   I     H+      V       +VS+G D+
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS 290

Query: 909 QIFVWDV 915
            I  W+V
Sbjct: 291 NIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 40/298 (13%), Positives = 80/298 (26%), Gaps = 20/298 (6%)

Query: 325 TVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL------------- 370
           ++ Q    G +    ++         L      G    WD+++G                
Sbjct: 3   SIDQVR-YGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60

Query: 371 --FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 428
                   ++ +     L           S   V        LG+A S       A    
Sbjct: 61  IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120

Query: 429 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
             A         V    + +  A       +  G   +      ++G+     +    P 
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180

Query: 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548
                    N  F+ +     K+  +   +       ++      ++A  +         
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240

Query: 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606
           T     S +V WN ++ +            +SV+ V +      I++AG D  IK W+
Sbjct: 241 TGSLDNSVIV-WNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWN 296

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 2e-07
 Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 15/92 (16%)

Query: 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----------GHGA 486
            AH  ++  ++          ++C  D  +KVWD          +            H  
Sbjct: 11  KAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518
            V          +  + + S  G +  +    
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITR 98

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 4e-07
 Identities = 43/393 (10%), Positives = 104/393 (26%), Gaps = 40/393 (10%)

Query: 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC--------- 629
             +  V         ++   D  +K+WD   +      D       +             
Sbjct: 15  ADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72

Query: 630 --FNKNGTLLAVIANENRIKILETPESNSVD-----AAGVLSDNLRKLSVNPISTVTGAG 682
                   L+A  +    +        +           +L  +++K S   +       
Sbjct: 73  ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132

Query: 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 742
                  V  D K            ++S      ++   E Q  +      +   + +  
Sbjct: 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 192

Query: 743 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP--RLYQPRHGPQFMVNDTTDSN 800
           +  G       +  V +        L       + +     +   +  PQ  +      +
Sbjct: 193 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 252

Query: 801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860
           +         ++    + S S          + +  L     S    SL+FN      + 
Sbjct: 253 NSFGCITLYETEFGERIGSLSVP------THSSQASLGEFAHSSWVMSLSFNDS-GETLC 305

Query: 861 IGMDDSTILIYNARSSEVISKLEGHSKRV----TGLVFSDALNILVSSGGDAQIFVWDVD 916
               D  +  ++ ++ E I+ L  H   +      L   +  + L   G      V+DV 
Sbjct: 306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVK 359

Query: 917 GW--GIQTCRSLQTPDGVMTLAPSETHIQFHKD 947
               G ++       + +  +    + I++ ++
Sbjct: 360 FLKKGWRSGMGADLNESLCCVCLDRS-IRWFRE 391

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 5e-06
 Identities = 33/320 (10%), Positives = 88/320 (27%), Gaps = 48/320 (15%)

Query: 361 LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420
           +WD         ++               + +    V       + +  L+        +
Sbjct: 38  VWDNKLLDNENPKDKSYSHFV------HKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 91

Query: 421 QLYAYHGGSDAR-------QQLEIDAHVGNVNDLAFSAPCKQIS---VITCGDDKTIKVW 470
             Y      + +         L+ D    +   L + A   ++    ++      T  +W
Sbjct: 92  LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 151

Query: 471 DA-VTGSRTYSFEGHGAPVYSLCPHAKENIH--------------FIFSISVDGKIKAWL 515
                   + S   + +P   L    +  +                I +   +G ++   
Sbjct: 152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISE 211

Query: 516 YDSLGARVDYD-----APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570
             +L    +++            R    +    L +          +  +    G    +
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271

Query: 571 YQG----------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-- 618
                             + V  + F+ + + + +AG D  ++ WD+   + +TT++   
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331

Query: 619 GGGLPENPRICFNKNGTLLA 638
                E   +  +++G  LA
Sbjct: 332 DDIEIEEDILAVDEHGDSLA 351

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 9e-05
 Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 4/188 (2%)

Query: 305 SLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV 364
               E        S +   +   ++ +  S    S+D       L+  G N G   + ++
Sbjct: 155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISEL 212

Query: 365 NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA 424
           ++ + L+    +   I   + +          +       +  G +              
Sbjct: 213 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 272

Query: 425 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484
                 ++  L   AH   V  L+F+   + +   + G D  ++ WD  T  R  +   H
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETL--CSAGWDGKLRFWDVKTKERITTLNMH 330

Query: 485 GAPVYSLC 492
              +    
Sbjct: 331 CDDIEIEE 338

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 48/456 (10%), Positives = 109/456 (23%), Gaps = 89/456 (19%)

Query: 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA 539
           + + H A ++S+         F  S S DG +K W                         
Sbjct: 9   AGKAHDADIFSVSACNS----FTVSCSGDGYLKVW------------------------- 39

Query: 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGD 598
                       + +    E  + +      ++      + +  +  D  +  ++A    
Sbjct: 40  ------------DNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 87

Query: 599 DHVIKIWDMNKVQLLTTIDAGGGLPENPRI-------------CFNKNGTLLAVIANENR 645
              +  + + +      +        +  +                     L     +  
Sbjct: 88  SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT 147

Query: 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705
             I +         +  L+ +        + +         SV ++E         I+  
Sbjct: 148 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL------IATG 201

Query: 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765
             N +     L             S +  +   R    +   ++ A+A +          
Sbjct: 202 FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 261

Query: 766 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVI 825
                    +  VP    Q   G     +     +  ++      +  D        G +
Sbjct: 262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD--------GKL 313

Query: 826 SLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 881
             + V T + I T+             LA + H +++   G+ D   L            
Sbjct: 314 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL------------ 361

Query: 882 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917
                K     + +D    L     D  I  +   G
Sbjct: 362 ----KKGWRSGMGADLNESLCCVCLDRSIRWFREAG 393

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 33/340 (9%), Positives = 85/340 (25%), Gaps = 22/340 (6%)

Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654
                    + D    +++  ID G      P      +G+ +A  A+    +I     +
Sbjct: 23  HFAAVTQQFVIDGEAGRVIGMIDGGFL----PNPVVADDGSFIAH-ASTVFSRIARGERT 77

Query: 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714
           + V+    ++         P +     G      S+  D K  +  + S  A     V+ 
Sbjct: 78  DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-PAPAVGVVDL 136

Query: 715 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 774
              A                   +   +   G                            
Sbjct: 137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 196

Query: 775 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 834
                             +   T +     +     S +  +L +      +        
Sbjct: 197 INHP------AYSQKAGRLVWPTYTGKIHQIDLS--SGDAKFLPAVEALTEAERADGWRP 248

Query: 835 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894
                +        +       +          +++ +A++ E ++K E     +  +  
Sbjct: 249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINV 307

Query: 895 S--DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV 932
           S  +   +   S GD  +++ D      ++   L++ + +
Sbjct: 308 SQDEKPLLYALSTGDKTLYIHDA-----ESGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.0 bits (115), Expect = 2e-06
 Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 13/142 (9%)

Query: 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409
           L+  T  G     D++SG   F+   +       +                +V +     
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA-------DGWRPGGWQQVAYHRALD 261

Query: 410 LLGVAYSKHIVQLYAYHGGS------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463
            + +   +     +               ++L        ++ +  S   K +       
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 321

Query: 464 DKTIKVWDAVTGSRTYSFEGHG 485
           DKT+ + DA +G    S    G
Sbjct: 322 DKTLYIHDAESGEELRSVNQLG 343

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.5 bits (93), Expect = 8e-04
 Identities = 32/323 (9%), Positives = 72/323 (22%), Gaps = 48/323 (14%)

Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTG---------LWDVNSGQKLFIRNFKVWDIG 381
           I+G   P +         +    T               ++D  +               
Sbjct: 44  IDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 102

Query: 382 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
                     +   G ++    +SP  ++  V       +                    
Sbjct: 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF------PT 156

Query: 442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 501
                            +  G + T ++           F  +                 
Sbjct: 157 APDTFFMHCRDGSLA-KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-------KAGR 208

Query: 502 IFSISVDGKIKAWLYDSLGARVDYDAPGLG------------CTRMAYSANGRRLF---- 545
           +   +  GKI      S  A+       L               ++AY     R++    
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 268

Query: 546 --SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF--DTAKDQILAAGDDHV 601
                  K    F+V  +   G     ++      + +  ++   D        +  D  
Sbjct: 269 QRDEWRHKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQDEKPLLYALSTGDKT 324

Query: 602 IKIWDMNKVQLLTTIDAGGGLPE 624
           + I D    + L +++  G  P+
Sbjct: 325 LYIHDAESGEELRSVNQLGHGPQ 347

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 3e-07
 Identities = 29/326 (8%), Positives = 77/326 (23%), Gaps = 39/326 (11%)

Query: 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398
            +   P +  LL           WD          +  V+     +              
Sbjct: 16  DIKIIPSKSLLL--------ITSWD---------GSLTVYKFDIQAKNVDLLQSLRYKHP 58

Query: 399 VNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +    +  +    + V   +  +      G    +     +A++G      +       +
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
                 +               +   +   V +       N   +     + +++ +   
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178

Query: 518 SLG--------------ARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNE 562
                             R     P         S +GR  +       +  +    +  
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238

Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
               +      L    NS+    F      +  AG D +I  W++   + +         
Sbjct: 239 RCHRLNLKDTNLAYPVNSIE---FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-- 293

Query: 623 PENPRICFNKNGTLLAVIANENRIKI 648
            E+  +    +  +L +  +++  K 
Sbjct: 294 -EDSVVKIACSDNILCLATSDDTFKT 318

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 21/265 (7%), Positives = 55/265 (20%), Gaps = 14/265 (5%)

Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
            ++ +   P  SLL +      + +Y +   +     L+   +   +    F        
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            +     + +KV    + S                    ++     S     ++      
Sbjct: 73  YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132

Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-L 576
             G     +                   S        S +  +                L
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192

Query: 577 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR--------- 627
           ++    V      ++    +  D  + +   +                +           
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252

Query: 628 ----ICFNKNGTLLAVIANENRIKI 648
               I F+     L    ++  I  
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISC 277

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 5e-06
 Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 19/129 (14%)

Query: 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVND 446
            +  +   +      +     V +  +    D             R  L+       VN 
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256

Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 505
           + FS   K +   T G D  I  W+  T  +  +F   +   V  +          +   
Sbjct: 257 IEFSPRHKFL--YTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310

Query: 506 SVDGKIKAW 514
           + D   K  
Sbjct: 311 TSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 2e-05
 Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 4/76 (5%)

Query: 841 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE---GHSKRVTGLVFSDA 897
            P    + +   P   +++ I   D ++ +Y          L     +   +    F D 
Sbjct: 9   APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 898 LNILVSSGGDAQIFVW 913
            ++ +  G      + 
Sbjct: 68  TDLQIYVGTVQGEILK 83

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 6/62 (9%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMT 934
           +++   +     ++ +    + ++L+ +  D  + V+  D     +   +SL+    ++ 
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 935 LA 936
             
Sbjct: 62  CN 63

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.2 bits (110), Expect = 6e-06
 Identities = 35/355 (9%), Positives = 86/355 (24%), Gaps = 44/355 (12%)

Query: 298 PDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG 357
            D+SP        F S G+    D   T    + E       +          + GT  G
Sbjct: 8   EDFSPLDG-DLIAFVSRGQAFIQDVSGTYVLKVPEPLR-IRYVRRGGDTKVAFIHGTREG 65

Query: 358 DT-GLWDVNSGQKL----------------------FIRNFKVWDIGACSMLFKTALVRD 394
           D  G++D  +G+                           +              T + R 
Sbjct: 66  DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125

Query: 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFS 450
               +     S +   +   +     +   Y   +    D   +    A   N +D A +
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA 185

Query: 451 APCKQISVITCGDDKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIF 503
                 ++            D V  +       + +                +       
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245

Query: 504 SISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562
              ++    ++   +          P      +          +       +  L++++ 
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305

Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
               +           N+++ +     +  ++   DD  I  + + K +   T++
Sbjct: 306 KTRKVTEV-------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.2 bits (110), Expect = 6e-06
 Identities = 20/159 (12%), Positives = 41/159 (25%), Gaps = 17/159 (10%)

Query: 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT-------- 389
           ++  F  V    ++            V          + + D+   S             
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269

Query: 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 449
             +    +  +  V     +    A  K ++  Y            ++     N+ DL  
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDLRL 322

Query: 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
           SA  K +  +   DD  I  +         + E    P+
Sbjct: 323 SADRKTV--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 38/394 (9%), Positives = 89/394 (22%), Gaps = 97/394 (24%)

Query: 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395
           S  + DF P+   L+   +  G   + DV+    L +                       
Sbjct: 4   SKFAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKVPE--------------------- 41

Query: 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS----- 450
            + +  V    D  +  +  ++    L  Y   +   +  + + ++GNV  +        
Sbjct: 42  PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--GKAEKFEENLGNVFAMGVDRNGKF 99

Query: 451 ---------------------------------------------APCKQISVITCGDDK 465
                                                            +         +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159

Query: 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525
            I V+D        +   +    +   P    +   ++ +S      +     L    + 
Sbjct: 160 AIHVYDMEGRKIFAATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV 216

Query: 526 DAPGLGCT-------RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
            +                         +                 +    R    L+   
Sbjct: 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276

Query: 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
              SV            A +  V+  +D+   ++    +    L        + +   + 
Sbjct: 277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL------RLSADRKTVM 330

Query: 639 VIANENRIKI--LETPESNSVDAAGVLSDNLRKL 670
           V  ++ +I    LE PE         +  + R L
Sbjct: 331 VRKDDGKIYTFPLEKPEDER-----TVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.4 bits (95), Expect = 4e-04
 Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 851 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 910
            +           +   +L Y+ ++     K+      +T L  S     ++    D +I
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKI 338

Query: 911 FVWDVDG 917
           + + ++ 
Sbjct: 339 YTFPLEK 345

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (111), Expect = 8e-06
 Identities = 28/231 (12%), Positives = 51/231 (22%), Gaps = 16/231 (6%)

Query: 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAP 452
           G +V+    S  G  L V      V +       +     EI                  
Sbjct: 61  GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK-EPTTVAEIKIGSEARSIETSKMEGWE 119

Query: 453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----------FI 502
            K   +          + D  T          G        H +  +           FI
Sbjct: 120 DKYA-IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 178

Query: 503 FSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561
            ++   GKI    Y  L   +    +            + R   +   ++     +    
Sbjct: 179 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238

Query: 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612
               AI+ T           + VH         +   D  + +   +    
Sbjct: 239 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH 289

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (90), Expect = 0.003
 Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 7/148 (4%)

Query: 841 PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899
            P    T    +    N+ ++   D   I + +  + E+ + L+     V     S +  
Sbjct: 16  APEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR 74

Query: 900 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--T 957
            L   G D ++ + D+      T   ++      ++  S        +    +       
Sbjct: 75  YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS---KMEGWEDKYAIAGAYWPP 131

Query: 958 HLAIYEAEELTCLKQWFPISSVPISQAT 985
              I + E L   K           Q  
Sbjct: 132 QYVIMDGETLEPKKIQSTRGMTYDEQEY 159

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 26/296 (8%), Positives = 54/296 (18%), Gaps = 66/296 (22%)

Query: 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 392
                  +        LL             V           ++    +C  +      
Sbjct: 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD-----QLTKSASCFHIH----- 171

Query: 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 452
             PG +    + S   SL     +                Q     A   N   +   A 
Sbjct: 172 --PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229

Query: 453 CKQISVITCGDDKTIKVWD---AVTGSRTYSFEGHGAPVYSLCPHAKE---NIHFIFSIS 506
              I                    +G +  +F   G  + +   +               
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289

Query: 507 VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565
           +           S+G      + G     +  + +G                        
Sbjct: 290 LAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN-------------------- 329

Query: 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621
                                         +    V+ I+D    Q  ++++   G
Sbjct: 330 ---------------------------YANSAGTEVLDIYDAASDQDQSSVELDKG 358

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.6 bits (104), Expect = 5e-05
 Identities = 30/301 (9%), Positives = 60/301 (19%), Gaps = 51/301 (16%)

Query: 389 TALVRDPGVSVNRVVWSPDGSLLGVA----------YSKHIVQLYAYHGGSDARQQLEID 438
             L    G  ++  V    GS   +A               V+++            +I+
Sbjct: 57  VTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---LPIADIE 113

Query: 439 AH-------VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
                       V+ +   A    + +                 S     +         
Sbjct: 114 LPDAPRFSVGPRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH- 171

Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------APGLGCTRMAYS 538
            P A       +  S    + A    +  A                  A       M   
Sbjct: 172 -PGAA---ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW 227

Query: 539 ANGRRLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQ--HNSVSVVHFDTAKDQI 593
           A    +        G +     + +E           G Q+     +   +   T +   
Sbjct: 228 AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR 287

Query: 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE--NRIKILE 650
                         +  Q    I  G         I   ++G       +     + I +
Sbjct: 288 SCLAAAENTSSVTASVGQTSGPISNGHD----SDAIIAAQDGASDNYANSAGTEVLDIYD 343

Query: 651 T 651
            
Sbjct: 344 A 344

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.9 bits (97), Expect = 3e-04
 Identities = 11/170 (6%), Positives = 36/170 (21%), Gaps = 19/170 (11%)

Query: 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTAL 391
             +++ +                     G+        +   +         +M      
Sbjct: 195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGD---IPAAGATMKAAIDG 251

Query: 392 VRDPGVSVNR-------VVWSPDGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEI 437
                 + N        V    +   + +   +H                     Q    
Sbjct: 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS--RSCLAAAENTSSVTASVGQTSGP 309

Query: 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487
            ++  + + +  +      +       + + ++DA +     S E    P
Sbjct: 310 ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 40/381 (10%), Positives = 93/381 (24%), Gaps = 47/381 (12%)

Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETPE 653
              D   I + D +  +++  ID G           + +G  L VI  + RI  I    +
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVIDTGYA-VHI--SRMSASGRYLLVIGRDARIDMIDLWAK 93

Query: 654 SNSVDAAGVLSDNLRKLSVNPISTVTG-----AGIANGSVSVNEDPKEDVKPEISVEAEN 708
             +  A   +    R +  +                    ++ +    + K  +S     
Sbjct: 94  EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153

Query: 709 KSEVEKPLFARP-----SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763
                     R      S      + +  +  K+  + Y +              L    
Sbjct: 154 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG 213

Query: 764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV----------PCFALSKN 813
             +       A               +                         P ++ S  
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273

Query: 814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI------GMDDST 867
                S  G     +    +K +  +      +  +  +P  +++              +
Sbjct: 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 333

Query: 868 ILIYNARSSEVISK---------LEGHSKRVTGLVFS-DALNILVSSGGDA----QIFVW 913
           + +++ ++ +   +         L   +KRV    ++     +  S          + V 
Sbjct: 334 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 393

Query: 914 DVDG---WGIQTCRSLQTPDG 931
           D        +     L TP G
Sbjct: 394 DDKTLKLKAVVKDPRLITPTG 414

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.9 bits (97), Expect = 3e-04
 Identities = 21/212 (9%), Positives = 54/212 (25%), Gaps = 9/212 (4%)

Query: 841  PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899
             P         +    N+ ++   D   I + +  S +++  ++     V     S +  
Sbjct: 16   KPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGR 74

Query: 900  ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-- 957
             L+  G DA+I + D+          ++      ++    +      +    +       
Sbjct: 75   YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE---SSKFKGYEDRYTIAGAYWPP 131

Query: 958  HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH--EASNLEVQCR 1015
              AI + E L   +          +Q            +  +    I   + +   +   
Sbjct: 132  QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191

Query: 1016 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1047
                  L  T+     +               
Sbjct: 192  YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT 223

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)

Query: 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474
                    +       +    I     +   +A +   K++  +      T+ V D  T
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKV-YVALSFCNTVSVIDTAT 275

Query: 475 GSRTYSFEGHGAP 487
            + T +      P
Sbjct: 276 NTITATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 38/291 (13%), Positives = 77/291 (26%), Gaps = 16/291 (5%)

Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE-NRIKILETP 652
           A  +   I + D+   ++  TI  G     NP     + +GT + V     N + I++T 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAHSNDVSIIDT- 61

Query: 653 ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712
                 A   +   +   S      V+  G      ++       +    +  A      
Sbjct: 62  ------ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG 115

Query: 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772
           + PL    S     L  +      +S +                   +      D T   
Sbjct: 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT--PDGTKVY 173

Query: 773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT 832
            A                 +     ++           +K            +S+    T
Sbjct: 174 VANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233

Query: 833 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883
            K    I P  P    +A  P    V       +T+ + +  ++ + + + 
Sbjct: 234 NKITARI-PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (88), Expect = 0.003
 Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 6/179 (3%)

Query: 454 KQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 511
           KQ   I   + + I VW+                  V  +     +  +    +  + ++
Sbjct: 3   KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRV 61

Query: 512 KAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568
            A+               A     T ++    G+ +F    +    S     +     + 
Sbjct: 62  LAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121

Query: 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627
              +GL   H++       T     L      +  + D   +      +        PR
Sbjct: 122 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1092
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.62
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.59
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.56
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.55
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.52
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.25
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.23
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.19
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.11
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.1
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.98
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.96
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.96
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.92
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.89
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.88
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.88
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.87
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.79
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.77
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.6
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.53
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.3
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.24
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.2
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.89
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.88
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.87
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.86
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.81
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.78
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.77
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.75
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.72
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.71
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.69
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.68
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.67
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.62
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.61
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.58
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.53
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.5
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.43
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.38
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.11
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.94
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	96.47
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.74
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.24
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.54
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.45
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.74
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	91.59
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.99
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	90.24
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.98
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	88.95
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	88.35
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	86.62

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-36  Score=332.44  Aligned_cols=292  Identities=13%  Similarity=0.167  Sum_probs=251.0

Q ss_pred             eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001362          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      .+.+| +|.+.|+|++|||+|+ +||+|+ ||.|+|||+.++.....              +......+|.+.|.+++|+
T Consensus        44 ~~~~~-~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~s  106 (337)
T d1gxra_          44 QINTL-NHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKLL  106 (337)
T ss_dssp             EEEEE-CCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEEC
T ss_pred             EEEEC-CCCCcEEEEEECCCCC-EEEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEEEc
Confidence            34555 8999999999999998 689987 79999999987654421              1122256799999999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001362          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1092)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  485 (1092)
                      |||++|++|+.|+.|++||+...... ....+..|...|.+++|+|++.  ++++++.|+.|++||+.+++......+|.
T Consensus       107 ~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~~  183 (337)
T d1gxra_         107 PDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT  183 (337)
T ss_dssp             TTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             CCCCEEEEeecccccccccccccccc-cccccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence            99999999999999999999865432 2336778999999999999999  89999999999999999999999999999


Q ss_pred             cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001362          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      ..|.+++|++  ++..+++++.||.+++||+++.+....+. +...|.+++|+|+++++++++.    ++.+++||..++
T Consensus       184 ~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~~  256 (337)
T d1gxra_         184 DGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNKP  256 (337)
T ss_dssp             SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTSS
T ss_pred             cccccccccc--cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc----cccccccccccc
Confidence            9999999954  66899999999999999999887665554 5678999999999999999876    556999999988


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001362          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  645 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  645 (1092)
                      +... ...|.   ..|.+++|+|++++|++++.||.|++||..+++.+..+...   ..|.+++|+|++++|++++.||+
T Consensus       257 ~~~~-~~~~~---~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~~  329 (337)
T d1gxra_         257 DKYQ-LHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDKK  329 (337)
T ss_dssp             CEEE-ECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTSC
T ss_pred             cccc-ccccc---cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEEEEEeCCCe
Confidence            8753 34444   88999999999999999999999999999999998887643   45899999999999999999999


Q ss_pred             EEEEEC
Q 001362          646 IKILET  651 (1092)
Q Consensus       646 i~iw~~  651 (1092)
                      |+|||+
T Consensus       330 I~vWdl  335 (337)
T d1gxra_         330 ATVYEV  335 (337)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.7e-36  Score=325.80  Aligned_cols=288  Identities=21%  Similarity=0.359  Sum_probs=263.5

Q ss_pred             eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001362          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      ..+|+||++.|++++|+|+++ +||||+.||+|+|||+.+++.+..                   +.+|...|.+++|+|
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~   69 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDH   69 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECT
T ss_pred             cEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeeec
Confidence            467999999999999999998 799999999999999999988865                   678999999999999


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001362          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  486 (1092)
                      ++.++++++.++.+.+|+....+...   .+.+|...+.++.|++++.  .+++++.|+.+++||+.+++.+..+.+|..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  144 (317)
T d1vyhc1          70 SGKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHRE  144 (317)
T ss_dssp             TSSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             cccccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCC
Confidence            99999999999999999998875443   4668999999999999999  799999999999999999999999999999


Q ss_pred             CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC--------------------CEEEE
Q 001362          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--------------------RRLFS  546 (1092)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg--------------------~~l~~  546 (1092)
                      .+.++++++  ++.+|++++.||.|++|++........+..+...+.++.++|++                    ..+++
T Consensus       145 ~~~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (317)
T d1vyhc1         145 WVRMVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS  222 (317)
T ss_dssp             CEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             cceeeeccc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence            999999854  67899999999999999999999999999999999999998764                    35666


Q ss_pred             EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001362          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  626 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  626 (1092)
                      ++.    ++.|++||..+++.+..+.+|.   ..|.+++|+|++++|++|+.||.|++||+.+++.+..+..|.  ..|.
T Consensus       223 ~~~----d~~i~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~--~~V~  293 (317)
T d1vyhc1         223 GSR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVT  293 (317)
T ss_dssp             EET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEE
T ss_pred             ccC----CCEEEEEECCCCcEEEEEeCCC---CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCC--CCEE
Confidence            654    6679999999999999999988   899999999999999999999999999999999999998764  4699


Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEE
Q 001362          627 RICFNKNGTLLAVIANENRIKILE  650 (1092)
Q Consensus       627 ~v~~s~~~~~l~~~~~dg~i~iw~  650 (1092)
                      +++|+|++++|++++.||+|+|||
T Consensus       294 ~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         294 SLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.5e-35  Score=317.88  Aligned_cols=291  Identities=16%  Similarity=0.200  Sum_probs=247.5

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001362          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      .+++.+.+++++|+|+. ||.++ ++.|.+||+.+++....                   +.+|...|++++|+|||++|
T Consensus        15 ~~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~l   73 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC   73 (311)
T ss_dssp             CCTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred             CCCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeEE-------------------EcCCCCCEEEEEEeCCCCeE
Confidence            34456788999999995 56654 56799999998877654                   67899999999999999999


Q ss_pred             EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC--CCcEEEEECCCCceeEEEecCCcCeE
Q 001362          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~  489 (1092)
                      |+|+.||+|+|||+.++..... ..+.+|.++|.+++|+|+++  ++++++.  +..++||++++++....+.+|...|+
T Consensus        74 atg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~  150 (311)
T d1nr0a1          74 ASGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN  150 (311)
T ss_dssp             EEEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEE
T ss_pred             eccccCceEeeeeeeccccccc-cccccccCcccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence            9999999999999998765532 25778999999999999999  6777764  56799999999999999999999999


Q ss_pred             EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001362          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1092)
Q Consensus       490 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1092)
                      +++|+++.+ ..+++|+.||.|++||+++.+.......+...|.++.++|+++++++++.    ++.|++||..++....
T Consensus       151 ~v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~  225 (311)
T d1nr0a1         151 SVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG  225 (311)
T ss_dssp             EEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred             cccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccc----cccccccccccccccc
Confidence            999976432 36889999999999999999988899999999999999999999999876    5669999999998887


Q ss_pred             EEeecc----ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001362          570 TYQGLQ----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  645 (1092)
Q Consensus       570 ~~~~~~----~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  645 (1092)
                      .+....    .|...|.+++|+|++++|++|+.||+|+|||+++++++.++..+... ....+.+.+++..+++++.||.
T Consensus       226 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~  304 (311)
T d1nr0a1         226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF  304 (311)
T ss_dssp             ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred             cccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCE
Confidence            765432    13478999999999999999999999999999999999998766432 2334556667778999999999


Q ss_pred             EEEEECC
Q 001362          646 IKILETP  652 (1092)
Q Consensus       646 i~iw~~~  652 (1092)
                      |++||.+
T Consensus       305 i~~wd~d  311 (311)
T d1nr0a1         305 INFVNPE  311 (311)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            9999964

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-34  Score=313.18  Aligned_cols=315  Identities=20%  Similarity=0.302  Sum_probs=264.9

Q ss_pred             EEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001362          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       469 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      .|.. .....+++.||.++|++++|+|  ++.+|++|+.||+|++||+.+++....+..|...|.+++++|++.+++++.
T Consensus         2 ~w~p-~~~~~~~L~GH~~~I~~l~~sp--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~   78 (317)
T d1vyhc1           2 EWIP-RPPEKYALSGHRSPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS   78 (317)
T ss_dssp             CCCC-CSSCSCEEECCSSCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccCC-CCCccEEEcCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccc
Confidence            3543 3344578999999999999965  668999999999999999999999999999999999999999999999987


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001362          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1092)
                      .    +..+..|+....+....+.++.   ..+.++.++|+++.+++++.|+.+++||+.+++.+..+..+.  ..+.++
T Consensus        79 ~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~  149 (317)
T d1vyhc1          79 A----DMTIKLWDFQGFECIRTMHGHD---HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--EWVRMV  149 (317)
T ss_dssp             T----TSCCCEEETTSSCEEECCCCCS---SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEE
T ss_pred             c----cccccccccccccccccccccc---ccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCC--Ccceee
Confidence            6    4558899999888888888777   889999999999999999999999999999999999888664  458899


Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccc
Q 001362          629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  708 (1092)
Q Consensus       629 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  708 (1092)
                      +|+|+++++++++.|+.+++|+..++.....+..+...+.++.+.                                   
T Consensus       150 ~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------------------  194 (317)
T d1vyhc1         150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA-----------------------------------  194 (317)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-----------------------------------
T ss_pred             ecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEe-----------------------------------
Confidence            999999999999999999999999887777666555555444444                                   


Q ss_pred             ccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCC
Q 001362          709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  788 (1092)
Q Consensus       709 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g  788 (1092)
                                                         |++......                                    
T Consensus       195 -----------------------------------~~~~~~~~~------------------------------------  203 (317)
T d1vyhc1         195 -----------------------------------PESSYSSIS------------------------------------  203 (317)
T ss_dssp             -----------------------------------CSCGGGGGG------------------------------------
T ss_pred             -----------------------------------eccccceee------------------------------------
Confidence                                               333211000                                    


Q ss_pred             CceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc
Q 001362          789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDST  867 (1092)
Q Consensus       789 ~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~  867 (1092)
                                  ............++.++++++ |+.|++||+.+++.+.++.+|...|.+++|+| ++++|++|+.||.
T Consensus       204 ------------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~  270 (317)
T d1vyhc1         204 ------------EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKT  270 (317)
T ss_dssp             ------------GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTE
T ss_pred             ------------ccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-CCCEEEEEECCCe
Confidence                        001111223344667777777 79999999999999999999999999999999 8999999999999


Q ss_pred             EEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001362          868 ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1092)
Q Consensus       868 v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd  914 (1092)
                      |++||+.+++++..+.+|.++|++++|+|++++|+|++.||+|+|||
T Consensus       271 i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         271 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-34  Score=312.89  Aligned_cols=283  Identities=13%  Similarity=0.188  Sum_probs=242.6

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccce--EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ--LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~--~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +|...|.+++|||+|++||+|+ ||.|+|||+.++......  ....+|.+.|.+++|+||++  +|++|+.|+.|++||
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC--EEEEeeccccccccc
Confidence            6999999999999999999987 789999999876544332  23457999999999999999  899999999999999


Q ss_pred             CCC--CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001362          472 AVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       472 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      +..  ++....+..|...+..+++++  ++.++++++.|+.|++|++.+.+.......+...+.+++|++++..+++++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~  203 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL  203 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            874  456678889999999999954  6789999999999999999999888888889999999999999999999876


Q ss_pred             CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001362          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1092)
                          ++.+++||+++++.+..+. +.   ..|.+++|+|+++++++++.|+.+++||+.+++.....   .+...|.+++
T Consensus       204 ----d~~v~i~d~~~~~~~~~~~-~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~v~  272 (337)
T d1gxra_         204 ----DNTVRSWDLREGRQLQQHD-FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH---LHESCVLSLK  272 (337)
T ss_dssp             ----TSEEEEEETTTTEEEEEEE-CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC---CCSSCEEEEE
T ss_pred             ----cccccccccccceeecccc-cc---cceEEEEEcccccccceecccccccccccccccccccc---ccccccceEE
Confidence                6679999999999887665 33   78999999999999999999999999999988876443   2345689999


Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccc
Q 001362          630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  709 (1092)
Q Consensus       630 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~  709 (1092)
                      |+|++++|++++.||.|++||..+++.+....                                                
T Consensus       273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~------------------------------------------------  304 (337)
T d1gxra_         273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------------------------------------------------  304 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------------------------------------------------
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc------------------------------------------------
Confidence            99999999999999999999998775543321                                                


Q ss_pred             cceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEee
Q 001362          710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  763 (1092)
Q Consensus       710 i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~  763 (1092)
                                             |...|.+++|+|++++|++++.||.|++|++
T Consensus       305 -----------------------~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         305 -----------------------ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             -----------------------CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             -----------------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence                                   4556778888888888888888888888875

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.7e-34  Score=321.57  Aligned_cols=303  Identities=15%  Similarity=0.231  Sum_probs=240.9

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001362          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  410 (1092)
                      .+|++.|+||+|||||+ +||+|+ |++|+|||+.+++.+.......... ............+|...|.+++|+|+|++
T Consensus        59 ~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             EECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSE
T ss_pred             CCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeeccccccc-ccccccccccccCCCCCEEEEEECCCCCc
Confidence            37999999999999998 689987 8999999999998876532210000 00011222235578899999999999999


Q ss_pred             EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEE
Q 001362          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS  490 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~  490 (1092)
                      |++|+.||.|++||...++.+.   .+.+|...|.+++|++++.  .+++++.++.+++||..+.........+...+ +
T Consensus       136 l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~  209 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-T  209 (388)
T ss_dssp             EEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECSSCEE-E
T ss_pred             ceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeeccccccccccccccccc-c
Confidence            9999999999999999886554   6788999999999999999  79999999999999999998888777555544 4


Q ss_pred             EeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001362          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       491 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      +.+.+ .++.+|++++.||.|++|+..+......+       ..|...|.+++|+|++++|++++.    ++.|++||+.
T Consensus       210 ~~~~~-~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~iwd~~  284 (388)
T d1erja_         210 VAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQ  284 (388)
T ss_dssp             EEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC-
T ss_pred             ccccC-CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcEEEEecc
Confidence            45543 46789999999999999999988766543       346678999999999999999986    6679999987


Q ss_pred             CCeEE------------EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE-
Q 001362          564 EGAIK------------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF-  630 (1092)
Q Consensus       564 ~~~~~------------~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-  630 (1092)
                      ++...            .....|.   ..|.+++|+|++++|++|+.||.|++||+.+++++..+..|..  .|.++++ 
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~~~~~~  359 (388)
T d1erja_         285 NANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVAVA  359 (388)
T ss_dssp             --------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEC
T ss_pred             CCccccccccccccceeeeccccc---ceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--CEEEEEEe
Confidence            66543            2333344   7899999999999999999999999999999999999987643  5777764 


Q ss_pred             -----ccCCCEEEEEeCCCeEEEEECC
Q 001362          631 -----NKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       631 -----s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                           +|++++|++|+.||+|+||+++
T Consensus       360 ~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         360 NGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cCcccCCCCCEEEEEeCCCEEEEEeee
Confidence                 6789999999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.5e-33  Score=309.55  Aligned_cols=295  Identities=19%  Similarity=0.266  Sum_probs=258.6

Q ss_pred             cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001362          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ....++|+||++.|++++|+|+++ +||+|+.||+|+|||+.+++.+..                   +.+|...|.+++
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~  104 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA  104 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEE-------------------EecccccEEeeE
Confidence            356689999999999999999998 699999999999999999987765                   667999999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCcc-cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001362          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      |+|+++++++|+.|+.+.+|+....... .....+.+|...........+.   .+.....|.....|+...........
T Consensus       105 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (340)
T d1tbga_         105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFT  181 (340)
T ss_dssp             ECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEE
T ss_pred             eeccceeeeeecccceeecccccccccccccceeccccccccccccccccc---cccccccccccccccccccccccccc
Confidence            9999999999999999999998765443 2334567788877776666654   57888889999999998888888888


Q ss_pred             cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001362          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      .+...+....+.+  .+.++++++.|+.|++||+++......+..|...|.+++|+|++++|++++.    ++.|++||.
T Consensus       182 ~~~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~  255 (340)
T d1tbga_         182 GHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDL  255 (340)
T ss_dssp             CCSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred             ccceeEeeecccc--ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEee
Confidence            8888888888754  5579999999999999999999999999999999999999999999999986    566999999


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001362          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      ........+.... +...+.+++|+|++++|++|+.||.|++||+.+++.+..+..|.  ..|.+++|+|++++|++|+.
T Consensus       256 ~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~--~~V~~l~~s~d~~~l~s~s~  332 (340)
T d1tbga_         256 RADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             TTTEEEEEECCTT-CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEET
T ss_pred             ccccccccccccc-ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEcc
Confidence            9998877765433 34679999999999999999999999999999999999998764  46999999999999999999


Q ss_pred             CCeEEEEE
Q 001362          643 ENRIKILE  650 (1092)
Q Consensus       643 dg~i~iw~  650 (1092)
                      ||.|+|||
T Consensus       333 Dg~v~iWd  340 (340)
T d1tbga_         333 DSFLKIWN  340 (340)
T ss_dssp             TSCEEEEC
T ss_pred             CCEEEEeC
Confidence            99999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-33  Score=318.21  Aligned_cols=325  Identities=14%  Similarity=0.162  Sum_probs=258.3

Q ss_pred             EEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc
Q 001362          352 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA  431 (1092)
Q Consensus       352 sg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~  431 (1092)
                      .+..++...+|+....+....             .+..  ..+|++.|+|++|||||++||+|+ |+.|+|||+.+++.+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~-------------~l~~--~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~   96 (388)
T d1erja_          33 KKQTNDYYILYNPALPREIDV-------------ELHK--SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV   96 (388)
T ss_dssp             EEECSSCEEEECTTSCCCEEE-------------EEEE--EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE
T ss_pred             ccCCCCcEEEeCCCCCcceee-------------eeEe--eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceE
Confidence            445667788999776554432             1111  236999999999999999999986 889999999988754


Q ss_pred             cce---------------EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeeccc
Q 001362          432 RQQ---------------LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK  496 (1092)
Q Consensus       432 ~~~---------------~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  496 (1092)
                      ...               ....+|...|++++|+|+++  +|++|+.||.|++||..+++.+..+.+|...|.++++++ 
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-  173 (388)
T d1erja_          97 ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-  173 (388)
T ss_dssp             EEECC-----------------CCCCBEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-
T ss_pred             eeecccccccccccccccccccCCCCCEEEEEECCCCC--cceeccccccccccccccccccccccccccccccccccc-
Confidence            321               12235777899999999999  899999999999999999999999999999999999955 


Q ss_pred             CCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc-
Q 001362          497 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-  575 (1092)
Q Consensus       497 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-  575 (1092)
                       ++..+++++.++.+++||..+.........+...+....+.+++++|++++.    ++.|++||..++.....+.... 
T Consensus       174 -~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~i~~~~~~~~~~~~~~~~~  248 (388)
T d1erja_         174 -SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENE  248 (388)
T ss_dssp             -TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC----
T ss_pred             -ccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcC----CCeEEEeecccCccceeeccccc
Confidence             6679999999999999999988777776666655555555568899999876    5569999999998877654321 


Q ss_pred             ---ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe----------CCCCCCCCceEEEccCCCEEEEEeC
Q 001362          576 ---LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID----------AGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       576 ---~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~----------~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                         .|...|.+++|+|++++|++++.||.|++||+.++.......          ...+...|.+++|+|++++|++|+.
T Consensus       249 ~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~  328 (388)
T d1erja_         249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK  328 (388)
T ss_dssp             --CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC
Confidence               234789999999999999999999999999998754432211          1123456899999999999999999


Q ss_pred             CCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001362          643 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       643 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~  716 (1092)
                      ||.|++||+.+++.+..+.+|...|.++++.+....                +|+++++++++.|++|++|++.
T Consensus       329 dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~----------------spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL----------------GPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT----------------CTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCccc----------------CCCCCEEEEEeCCCEEEEEeee
Confidence            999999999999999999999999999988643221                6899999999999999999975

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.3e-33  Score=307.10  Aligned_cols=347  Identities=15%  Similarity=0.187  Sum_probs=255.7

Q ss_pred             eeeecccCCCCc-eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          326 VAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       326 ~~~~l~~h~~~V-~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ...+|+||.+.| +|++|  ||+ +||+|+.||+|+|||+.+++.+.+                   +.+|.++|.+++|
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~-~l~tgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~l~~   61 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKY   61 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EECCCCCEEEEEE
Confidence            357899999887 56555  677 699999999999999999988765                   7789999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      +|+ .+|++|+.|++|++|++......... ....+...+....+++++.  .+++++.|+.|++||+.++..+......
T Consensus        62 s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~iw~~~~~~~~~~~~~~  137 (355)
T d1nexb2          62 AHG-GILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEE  137 (355)
T ss_dssp             ETT-TEEEEEETTCCEEEEETTTTEEEEEE-CCCSSCEEEEEEEEETTEE--EEEEEETTSEEEEEECCC----------
T ss_pred             cCC-CEEEEEeccccccccccccccccccc-ccccccccccccccccccc--eeeeecCCCcEEEEEccCCceecccccc
Confidence            986 58999999999999999987654322 1223444566778888888  8999999999999999988766554322


Q ss_pred             CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001362          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      ..... ....+......+.                    ....+...+  ..+.++++.++.+..    ++.+++||..+
T Consensus       138 ~~~~~-~~~~~~~~~~~~~--------------------~~~~~~~~v--~~~~~~~~~~~~~~~----d~~i~~~d~~~  190 (355)
T d1nexb2         138 HDYPL-VFHTPEENPYFVG--------------------VLRGHMASV--RTVSGHGNIVVSGSY----DNTLIVWDVAQ  190 (355)
T ss_dssp             -CCCE-EESCTTTCTTEEE--------------------EEECCSSCE--EEEEEETTEEEEEET----TSCEEEEETTT
T ss_pred             ceecc-ceeccccccceee--------------------eeeeccccc--cccccccceeeeecc----cceeeeeeccc
Confidence            22111 1111111111111                    111222222  345677888888876    55699999999


Q ss_pred             CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001362          565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       565 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      ++.+....++.   ..+.++.++|++..+++++.|+.|++||..++..+..+..|.  ..|.+++++  ++++++++.||
T Consensus       191 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~~--~~~l~~~~~dg  263 (355)
T d1nexb2         191 MKCLYILSGHT---DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT--ALVGLLRLS--DKFLVSAAADG  263 (355)
T ss_dssp             TEEEEEECCCS---SCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCCCEEEEC--SSEEEEECTTS
T ss_pred             ccceeeeeccc---cccccccccccceeeecccccceEEeeecccccccccccccc--ccccccccc--cceeeeeeccc
Confidence            99998888777   789999999999999999999999999999999999988664  468888886  57899999999


Q ss_pred             eEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccc
Q 001362          645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  724 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~  724 (1092)
                      .|++||+.+......                                                                 
T Consensus       264 ~i~iwd~~~~~~~~~-----------------------------------------------------------------  278 (355)
T d1nexb2         264 SIRGWDANDYSRKFS-----------------------------------------------------------------  278 (355)
T ss_dssp             EEEEEETTTCCEEEE-----------------------------------------------------------------
T ss_pred             ccccccccccceecc-----------------------------------------------------------------
Confidence            999999765321100                                                                 


Q ss_pred             ccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCC
Q 001362          725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA  804 (1092)
Q Consensus       725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~  804 (1092)
                                       +.                                                         +...
T Consensus       279 -----------------~~---------------------------------------------------------~~~~  284 (355)
T d1nexb2         279 -----------------YH---------------------------------------------------------HTNL  284 (355)
T ss_dssp             -----------------EE---------------------------------------------------------CTTC
T ss_pred             -----------------cc---------------------------------------------------------cCCc
Confidence                             00                                                         0111


Q ss_pred             eeEEEEecCCCEEEEEeCCeEEEEEcCCceeeE-EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEc
Q 001362          805 VPCFALSKNDAYLFSASGGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA  873 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~  873 (1092)
                      ....+++++++++++++|+.|++||+++++++. .+.+|...|.+++|+| + .++++++.||+++||.+
T Consensus       285 ~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~-~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         285 SAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-K-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             CCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEET-T-EEEEEEESSSCEEEEEE
T ss_pred             eEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcC-C-eEEEEEECCCcEEEEEE
Confidence            112356788899999999999999999999885 4677889999999998 5 58888999998776643

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-33  Score=304.89  Aligned_cols=294  Identities=13%  Similarity=0.149  Sum_probs=230.6

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      .+.++++||++.|++++|+|||+ +||+|+.||+|++||+++++.+..                  +..+|...|.+++|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~~   63 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIKT   63 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEE------------------EcCCCCCcEEEEEe
Confidence            46789999999999999999998 689999999999999999987754                  13469999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      +|+|+++ +++.|+.+++|+...............|...+.+++|+++++  +++++ .++.+++|+..  +.....  .
T Consensus        64 ~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~-~~~~i~~~~~~--~~~~~~--~  135 (299)
T d1nr0a2          64 TSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAA-CYKHIAIYSHG--KLTEVP--I  135 (299)
T ss_dssp             CTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEE-ESSEEEEEETT--EEEEEE--C
T ss_pred             eccceee-cccceeeEEEeccCCccccccccccccccccccccccccccc--ccccc-ccccccccccc--cccccc--c
Confidence            9999755 556788999999876543322223446778899999999998  45544 46789999843  222222  3


Q ss_pred             CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001362          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      ...+.+++++  +++.++++++.||.|++||+++..... ....+...|.+++|+|+++++++++.    ++.|++||..
T Consensus       136 ~~~~~~~~~s--~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~  209 (299)
T d1nr0a2         136 SYNSSCVALS--NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVA  209 (299)
T ss_dssp             SSCEEEEEEC--TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGG
T ss_pred             cccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccc
Confidence            4457778885  467899999999999999998776543 44567789999999999999999876    5569999998


Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCC-CCCceEEEccCCCEEEEEeC
Q 001362          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      ++...........|...|.+++|+|+++++++|+.||.|++||++++..........+. ..+.++ +++++++|++++.
T Consensus       210 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~  288 (299)
T d1nr0a2         210 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQ  288 (299)
T ss_dssp             GTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEET
T ss_pred             ccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeC
Confidence            88766554443334489999999999999999999999999999987655444333322 334444 5566789999999


Q ss_pred             CCeEEEEECC
Q 001362          643 ENRIKILETP  652 (1092)
Q Consensus       643 dg~i~iw~~~  652 (1092)
                      |+.|++||+.
T Consensus       289 D~~i~iWdl~  298 (299)
T d1nr0a2         289 DSNIKFWNVP  298 (299)
T ss_dssp             TSCEEEEECC
T ss_pred             CCEEEEEecc
Confidence            9999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.7e-33  Score=306.94  Aligned_cols=346  Identities=14%  Similarity=0.181  Sum_probs=266.9

Q ss_pred             eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc
Q 001362          522 RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV  601 (1092)
Q Consensus       522 ~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~  601 (1092)
                      +.++.+|...|.. ++++++++|++|+.    ++.|++||..+++.+..+.+|.   +.|.+++|+|+ .++++++.|++
T Consensus         5 ~~tL~GH~~~vit-c~~~~~~~l~tgs~----Dg~i~vWd~~~~~~~~~l~~H~---~~V~~l~~s~~-~~l~s~s~D~~   75 (355)
T d1nexb2           5 RTTLRGHMTSVIT-CLQFEDNYVITGAD----DKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHG-GILVSGSTDRT   75 (355)
T ss_dssp             EEEEECCSSSCEE-EEEEETTEEEEEET----TTEEEEEETTTTEEEEEEECCS---SCEEEEEEETT-TEEEEEETTCC
T ss_pred             cEEECCcCCCcEE-EEEECCCEEEEEeC----CCeEEEEECCCCcEEEEEECCC---CCEEEEEEcCC-CEEEEEecccc
Confidence            4467788877633 35567899999986    6679999999999999999988   89999999986 58999999999


Q ss_pred             EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccc
Q 001362          602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA  681 (1092)
Q Consensus       602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  681 (1092)
                      |++|+....+..................+++++.++++++.|+.|++|++.+..............              
T Consensus        76 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~--------------  141 (355)
T d1nexb2          76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP--------------  141 (355)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC--------------
T ss_pred             cccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec--------------
Confidence            999999999888877666554445667788999999999999999999988654332211000000              


Q ss_pred             cccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCc-EEEEeecCCeeEE
Q 001362          682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLM  760 (1092)
Q Consensus       682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~l  760 (1092)
                                                                               .....+... .++....      
T Consensus       142 ---------------------------------------------------------~~~~~~~~~~~~~~~~~------  158 (355)
T d1nexb2         142 ---------------------------------------------------------LVFHTPEENPYFVGVLR------  158 (355)
T ss_dssp             ---------------------------------------------------------EEESCTTTCTTEEEEEE------
T ss_pred             ---------------------------------------------------------cceeccccccceeeeee------
Confidence                                                                     000000000 0000000      


Q ss_pred             EeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEe
Q 001362          761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI  839 (1092)
Q Consensus       761 w~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~  839 (1092)
                                                             .|...+  ..+.+++++++++. |+.+++||+.+++.+...
T Consensus       159 ---------------------------------------~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  197 (355)
T d1nexb2         159 ---------------------------------------GHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL  197 (355)
T ss_dssp             ---------------------------------------CCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ---------------------------------------eccccc--cccccccceeeeecccceeeeeecccccceeee
Confidence                                                   133333  34566788888887 799999999999999999


Q ss_pred             cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001362          840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  919 (1092)
Q Consensus       840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~  919 (1092)
                      .++...+.++.++| ++.++++++.||.|++||+.++..+..+.+|...|.+++|+  +++|++++.||.|++||+.+..
T Consensus       198 ~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~  274 (355)
T d1nexb2         198 SGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS  274 (355)
T ss_dssp             CCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC
T ss_pred             eccccccccccccc-cceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccc
Confidence            99999999999999 89999999999999999999999999999999999999996  4699999999999999999865


Q ss_pred             eeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC
Q 001362          920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD  999 (1092)
Q Consensus       920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D  999 (1092)
                      ...    ......     .....++++++.+++++.|++|++||+++++++.....+|...|.+++|+|+ .++++++.|
T Consensus       275 ~~~----~~~~~~-----~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~d  344 (355)
T d1nexb2         275 RKF----SYHHTN-----LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKD  344 (355)
T ss_dssp             EEE----EEECTT-----CCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESS
T ss_pred             eec----ccccCC-----ceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECC
Confidence            321    111111     1233467899999999999999999999999987777889999999999987 478889999


Q ss_pred             CcEEEEEc
Q 001362         1000 GTLSIHEA 1007 (1092)
Q Consensus      1000 g~i~vwd~ 1007 (1092)
                      |+++||.+
T Consensus       345 g~~~l~~~  352 (355)
T d1nexb2         345 GQSFLEIL  352 (355)
T ss_dssp             SCEEEEEE
T ss_pred             CcEEEEEE
Confidence            99777654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-32  Score=298.72  Aligned_cols=286  Identities=11%  Similarity=0.100  Sum_probs=229.8

Q ss_pred             CCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001362          624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1092)
Q Consensus       624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1092)
                      ....++++|+|+.|+.+. ++.+.+|++.+......+.+                                         
T Consensus        19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~-----------------------------------------   56 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTE-----------------------------------------   56 (311)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECC-----------------------------------------
T ss_pred             CeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcC-----------------------------------------
Confidence            345789999999999885 56799999987644443332                                         


Q ss_pred             eccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccc
Q 001362          704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY  783 (1092)
Q Consensus       704 ~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w  783 (1092)
                                                   |...|.+++|+|+|++|++++.||.|++|++.....               
T Consensus        57 -----------------------------H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~---------------   92 (311)
T d1nr0a1          57 -----------------------------HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH---------------   92 (311)
T ss_dssp             -----------------------------CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC---------------
T ss_pred             -----------------------------CCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc---------------
Confidence                                         666788888889999899999999999988754321               


Q ss_pred             cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC---CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC-EE
Q 001362          784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VI  859 (1092)
Q Consensus       784 ~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~l  859 (1092)
                             .....+.  .|...|.+++|+|++++++++++   ..+++|++++++....+.+|...|++++|+| +++ +|
T Consensus        93 -------~~~~~~~--~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~l  162 (311)
T d1nr0a1          93 -------ILKTTIP--VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRI  162 (311)
T ss_dssp             -------CEEEEEE--CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEE
T ss_pred             -------ccccccc--cccCccccccccccccccccccccccccccccccccccccccccccccccccccccc-cceeee
Confidence                   1111122  38889999999999999999874   4599999999999999999999999999999 555 58


Q ss_pred             EEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeee--ecCCCCcCCCC
Q 001362          860 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL--QTPDGVMTLAP  937 (1092)
Q Consensus       860 asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~  937 (1092)
                      ++|+.||.|++||+++++....+.+|..+|++++|+|++++|++++.|+.|++||+..++.......  ....+|.   .
T Consensus       163 ~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~---~  239 (311)
T d1nr0a1         163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS---G  239 (311)
T ss_dssp             EEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS---S
T ss_pred             cccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccc---c
Confidence            8999999999999999999999999999999999999999999999999999999998664331111  1112333   4


Q ss_pred             CceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001362          938 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       938 ~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
                      .|.+++|+|++++|++ +.|+.|+|||+.+++++..+...+......+.+.+++.+|++++.||.|++||.+
T Consensus       240 ~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         240 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             cccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            7999999999999999 5789999999999999887554433333344555567789999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.3e-33  Score=311.53  Aligned_cols=264  Identities=12%  Similarity=0.058  Sum_probs=209.6

Q ss_pred             CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001362          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      .++|+|++|||||+ +||+|+.|+.|+|||+++++....                 ..+.+|.++|.+++|+|++++|++
T Consensus         7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~-----------------~~l~gH~~~V~~l~fsp~~~~l~s   68 (371)
T d1k8kc_           7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQV-----------------HELKEHNGQVTGVDWAPDSNRIVT   68 (371)
T ss_dssp             SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEEETTTTEEEE
T ss_pred             CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEE-----------------EEecCCCCCEEEEEECCCCCEEEE
Confidence            35899999999998 689999999999999988764432                 127789999999999999999999


Q ss_pred             EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee----EEEecCCcCeE
Q 001362          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPVY  489 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~----~~~~~~~~~v~  489 (1092)
                      |+.|++|+|||+.++.... ...+.+|...|.+++|+|+++  .+++++.|++|++|+++.....    .....|...|.
T Consensus        69 ~s~D~~i~vWd~~~~~~~~-~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~  145 (371)
T d1k8kc_          69 CGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  145 (371)
T ss_dssp             EETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             EECCCeEEEEeeccccccc-ccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence            9999999999998765332 335678999999999999999  8999999999999998776543    33456889999


Q ss_pred             EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001362          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1092)
Q Consensus       490 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1092)
                      +++|+|  ++.+|++|+.||+|++|+.............          +.+                  .+...++...
T Consensus       146 ~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~----------~~~------------------~~~~~~~~~~  195 (371)
T d1k8kc_         146 SLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPT----------PWG------------------SKMPFGELMF  195 (371)
T ss_dssp             EEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCB----------TTB------------------SCCCTTCEEE
T ss_pred             cccccc--cccceeccccCcEEEEEeeccCccccccccc----------ccc------------------ccccceeeee
Confidence            999965  7789999999999999998654322111000          000                  0112234444


Q ss_pred             EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEE
Q 001362          570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  649 (1092)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  649 (1092)
                      ...+|.   ..|.+++|+|+++++++++.|+.|++||+.++..+..+..+.  ..|.+++|+|+++++++|+ |+.+++|
T Consensus       196 ~~~~~~---~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~s~~fs~d~~~la~g~-d~~~~~~  269 (371)
T d1k8kc_         196 ESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET--LPLLAVTFITESSLVAAGH-DCFPVLF  269 (371)
T ss_dssp             ECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEET-TSSCEEE
T ss_pred             eccCcc---CcEEEEEeecccccccccccCCcceEEeeecccceeeeeccc--ccceeeeecCCCCEEEEEc-CCceEEE
Confidence            555555   889999999999999999999999999999999999988664  4689999999998887655 6777776


Q ss_pred             ECCCC
Q 001362          650 ETPES  654 (1092)
Q Consensus       650 ~~~~~  654 (1092)
                      .....
T Consensus       270 ~~~~~  274 (371)
T d1k8kc_         270 TYDSA  274 (371)
T ss_dssp             EEETT
T ss_pred             EeeCC
Confidence            65543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.5e-32  Score=297.60  Aligned_cols=286  Identities=14%  Similarity=0.183  Sum_probs=257.5

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      |.||.+.|++++|+|++++||+|+.||+|+|||+.+++.+.   .+..|...|.+++|+|++.  ++++|+.|+.+++|+
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN  125 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEE
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeeccc
Confidence            88999999999999999999999999999999999987555   6789999999999999999  899999999999999


Q ss_pred             CCCC----ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001362          472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       472 ~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      ....    .....+.+|...........   +..+.....+.....+.................+....+.+.+.+++++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccceeccccccccccccccc---ccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence            7654    34566777877776655432   3578889999999999988888777788888889999999999999998


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001362          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                      ..    ++.|++||..+++.+..+.+|.   ..|.+++|+|+++++++|+.||.|++||+........+........+.+
T Consensus       203 ~~----d~~v~i~d~~~~~~~~~~~~h~---~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~  275 (340)
T d1tbga_         203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             ET----TTEEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             ec----CceEEEEECCCCcEEEEEeCCC---CCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence            76    6679999999999999999887   8999999999999999999999999999999999888877666677899


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001362          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      ++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+                      |+++++++++.|
T Consensus       276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s----------------------~d~~~l~s~s~D  333 (340)
T d1tbga_         276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD  333 (340)
T ss_dssp             EEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred             EEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEe----------------------CCCCEEEEEccC
Confidence            9999999999999999999999999999999999999999999996                      788999999999


Q ss_pred             cccceec
Q 001362          708 NKSEVEK  714 (1092)
Q Consensus       708 ~~i~lw~  714 (1092)
                      |.|++||
T Consensus       334 g~v~iWd  340 (340)
T d1tbga_         334 SFLKIWN  340 (340)
T ss_dssp             SCEEEEC
T ss_pred             CEEEEeC
Confidence            9999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-31  Score=289.79  Aligned_cols=330  Identities=16%  Similarity=0.225  Sum_probs=262.2

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ...++|+||++.|.+ +++++|+ +||||+.||+|+|||+.+++++.+                   +.+|...|.+++|
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v~~   65 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQM   65 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEE
T ss_pred             CcCEEECCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCCEEEEEe
Confidence            455789999999975 4777898 689999999999999999998865                   7789999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      +|+  +|++|+.|+.+++|+........   ....+...+....+.+  .  .+..+..|+.+.+|+..+++....+..+
T Consensus        66 ~~~--~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~  136 (342)
T d2ovrb2          66 RDN--IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGH  136 (342)
T ss_dssp             ETT--EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred             CCC--ccccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeeecc
Confidence            975  99999999999999998764332   3444555566555543  3  5788899999999999999988887766


Q ss_pred             CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001362          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      .........    ....+++++.|+.|++||.........+..+...+.  .+++++.++++++.    ++.|++||..+
T Consensus       137 ~~~~~~~~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~----dg~i~~~d~~~  206 (342)
T d2ovrb2         137 VAAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQFDGIHVVSGSL----DTSIRVWDVET  206 (342)
T ss_dssp             SSCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE--EEEECSSEEEEEET----TSCEEEEETTT
T ss_pred             cccceeecc----ccceeeeecCCCeEEEeecccceeeEEEcCcccccc--cccCCCCEEEEEeC----CCeEEEeeccc
Confidence            555444332    345789999999999999998888888877766554  45568899999986    56699999999


Q ss_pred             CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001362          565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       565 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      ++.+..+.+|.   ..+.++.+++  +++++++.|+.|++||....+....+..+.. ......++.++++++++++.||
T Consensus       207 ~~~~~~~~~~~---~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~s~Dg  280 (342)
T d2ovrb2         207 GNCIHTLTGHQ---SLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFNKNFVITSSDDG  280 (342)
T ss_dssp             CCEEEEECCCC---SCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTS-CSSCEEEEEECSSEEEEEETTS
T ss_pred             ceeeeEecccc---cceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccce-eeeceeecccCCCeeEEEcCCC
Confidence            99999998887   7888877765  6899999999999999999988888765432 1233445556678999999999


Q ss_pred             eEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccc
Q 001362          645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  724 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~  724 (1092)
                      .|++||+.+++.+..+...                                                             
T Consensus       281 ~i~iwd~~tg~~i~~~~~~-------------------------------------------------------------  299 (342)
T d2ovrb2         281 TVKLWDLKTGEFIRNLVTL-------------------------------------------------------------  299 (342)
T ss_dssp             EEEEEETTTCCEEEEEEEC-------------------------------------------------------------
T ss_pred             EEEEEECCCCCEEEEEecc-------------------------------------------------------------
Confidence            9999999988776554311                                                             


Q ss_pred             ccccCCccccccEEEEEEecCCcEEEEeecCCe----eEEEeecC
Q 001362          725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR  765 (1092)
Q Consensus       725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~----i~lw~~~~  765 (1092)
                          ...+|...|.+++|+|++..+++++.||+    +++||++.
T Consensus       300 ----~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         300 ----ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ----TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ----cCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence                01126677899999999998999888885    88888754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.7e-31  Score=283.78  Aligned_cols=293  Identities=12%  Similarity=0.099  Sum_probs=225.9

Q ss_pred             CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCcee
Q 001362          610 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS  689 (1092)
Q Consensus       610 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  689 (1092)
                      |+..+.+.+|  ...|.+++|+|++++|++|+.||.|++||+.+++....+.                            
T Consensus         2 g~~~~~~~GH--~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~----------------------------   51 (299)
T d1nr0a2           2 GSIDQVRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP----------------------------   51 (299)
T ss_dssp             TEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS----------------------------
T ss_pred             CccceEcCCC--CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc----------------------------
Confidence            4566777766  4579999999999999999999999999998876554332                            


Q ss_pred             ecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcC
Q 001362          690 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT  769 (1092)
Q Consensus       690 ~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~  769 (1092)
                                                               ..|...|.+++|+|+++ +++++.|+.+++|+.......
T Consensus        52 -----------------------------------------~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~   89 (299)
T d1nr0a2          52 -----------------------------------------DVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVD   89 (299)
T ss_dssp             -----------------------------------------CSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSC
T ss_pred             -----------------------------------------CCCCCcEEEEEeeccce-eecccceeeEEEeccCCcccc
Confidence                                                     12667788899999987 566777889999986543210


Q ss_pred             cCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEE
Q 001362          770 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL  849 (1092)
Q Consensus       770 ~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l  849 (1092)
                                       ... ...     ..+...+.++++++++++++++.++.+.+|+...  .....  ....+.++
T Consensus        90 -----------------~~~-~~~-----~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~~~~~~~~  142 (299)
T d1nr0a2          90 -----------------SSK-AVA-----NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP--ISYNSSCV  142 (299)
T ss_dssp             -----------------TTS-CCE-----EECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEE--CSSCEEEE
T ss_pred             -----------------ccc-ccc-----cccccccccccccccccccccccccccccccccc--ccccc--cccccccc
Confidence                             000 000     0256778899999999999999999999999643  22222  34568899


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEEcCCceeeE-eeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec
Q 001362          850 AFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT  928 (1092)
Q Consensus       850 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~  928 (1092)
                      +|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++|++++.|+.|++||+.++....  ....
T Consensus       143 ~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~--~~~~  219 (299)
T d1nr0a2         143 ALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA--HTNS  219 (299)
T ss_dssp             EECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES--CCCC
T ss_pred             cccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccc
Confidence            9999 89999999999999999999877543 345699999999999999999999999999999998755322  2333


Q ss_pred             CCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeee-ccCC-CCCEEEEEEecCCCEEEEEECCCcEEEE
Q 001362          929 PDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW-FPIS-SVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus       929 ~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~-~~~h-~~~v~~l~fs~dg~~l~t~~~Dg~i~vw 1005 (1092)
                      ..+|..   .|.+++|+|++++|++ +.|+.|++||+.++...... ...| ...|.++. ++++++|++++.||+|++|
T Consensus       220 ~~~h~~---~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~iW  295 (299)
T d1nr0a2         220 WTFHTA---KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKFW  295 (299)
T ss_dssp             CCCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTSCEEEE
T ss_pred             cccccc---ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCCCEEEEE
Confidence            444443   7999999999999999 57899999999877543322 2333 55666664 5677899999999999999


Q ss_pred             EcC
Q 001362         1006 EAS 1008 (1092)
Q Consensus      1006 d~~ 1008 (1092)
                      |+.
T Consensus       296 dl~  298 (299)
T d1nr0a2         296 NVP  298 (299)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            984

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-30  Score=288.30  Aligned_cols=320  Identities=20%  Similarity=0.292  Sum_probs=249.4

Q ss_pred             ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEE
Q 001362          433 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK  512 (1092)
Q Consensus       433 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  512 (1092)
                      ....++||.+.|.+ +++++|+  +|+||+.||+|+|||+.++++++++.+|...|.+++|++    .+|++++.|+.++
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~   80 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLK   80 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred             cCEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccc
Confidence            33478999999865 4677888  899999999999999999999999999999999999954    4899999999999


Q ss_pred             EEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCE
Q 001362          513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ  592 (1092)
Q Consensus       513 vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  592 (1092)
                      +|+................+......  ...+..+..    +..+.+|+..+++....+....   ..  .....+....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----d~~i~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~  149 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHV---AA--VRCVQYDGRR  149 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCS---SC--EEEEEECSSC
T ss_pred             ccccccccceecccccceeEeeeecc--ccccccccc----ceeEEEeecccccceeeeeccc---cc--ceeeccccce
Confidence            99998877777666666666554443  345555544    6679999999998877776544   22  2234456678


Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeee
Q 001362          593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV  672 (1092)
Q Consensus       593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~  672 (1092)
                      +++++.|+.+++||......+..+..+.    .....+++++.++++++.||.|++|++..++.+....           
T Consensus       150 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~-----------  214 (342)
T d2ovrb2         150 VVSGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT-----------  214 (342)
T ss_dssp             EEEEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC-----------
T ss_pred             eeeecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccceeeeEec-----------
Confidence            8999999999999999998888887553    3556677788999999999999999987654332221           


Q ss_pred             cCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEe
Q 001362          673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL  752 (1092)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~  752 (1092)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (342)
T d2ovrb2         215 --------------------------------------------------------------------------------  214 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcC
Q 001362          753 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM  831 (1092)
Q Consensus       753 ~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~  831 (1092)
                                                                     +|...+.+++++  ++++++++ |+.|++||+.
T Consensus       215 -----------------------------------------------~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~  245 (342)
T d2ovrb2         215 -----------------------------------------------GHQSLTSGMELK--DNILVSGNADSTVKIWDIK  245 (342)
T ss_dssp             -----------------------------------------------CCCSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             -----------------------------------------------ccccceeEEecC--CCEEEEEcCCCEEEEEecc
Confidence                                                           133444444443  45777776 6788888888


Q ss_pred             CceeeEEecC---CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec-----cccCCeEEEEEcCCCCEEEE
Q 001362          832 TFKTILTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSKRVTGLVFSDALNILVS  903 (1092)
Q Consensus       832 ~~~~~~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-----~h~~~V~~l~~spdg~~l~s  903 (1092)
                      ..+....+..   |...+.++++++   +++++|+.||.|++||+.+++++..+.     +|.+.|++++|+|++.+||+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~  322 (342)
T d2ovrb2         246 TGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV  322 (342)
T ss_dssp             TCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred             cccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEE
Confidence            7777766654   445667777754   699999999999999999999887763     58889999999999999999


Q ss_pred             EeCCCc----EEEEEcCC
Q 001362          904 SGGDAQ----IFVWDVDG  917 (1092)
Q Consensus       904 ~s~Dg~----i~iwd~~~  917 (1092)
                      |+.||+    |++||++.
T Consensus       323 g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         323 GSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ECSSSSSCCEEEEEECCC
T ss_pred             EeCCCCCeeEEEEEeCCC
Confidence            999996    99999975

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.1e-31  Score=295.33  Aligned_cols=306  Identities=13%  Similarity=0.119  Sum_probs=236.6

Q ss_pred             CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001362          529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD  606 (1092)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd  606 (1092)
                      ..+|++++|+|||++|++++.    ++.|++||..+++  .+..+.+|.   +.|.+++|+|++++|++++.|++|++||
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~----~~~i~iw~~~~~~~~~~~~l~gH~---~~V~~l~fsp~~~~l~s~s~D~~i~vWd   79 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAYVWT   79 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeC----CCEEEEEECCCCCEEEEEEecCCC---CCEEEEEECCCCCEEEEEECCCeEEEEe
Confidence            357999999999999999875    5679999998775  566778887   8999999999999999999999999999


Q ss_pred             CCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCC
Q 001362          607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  686 (1092)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  686 (1092)
                      +.++.....+....+...|.+++|+|+++.+++++.|+.+++|+...........                         
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~-------------------------  134 (371)
T d1k8kc_          80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK-------------------------  134 (371)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-------------------------
T ss_pred             ecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccc-------------------------
Confidence            9988877776665666679999999999999999999999999876543221110                         


Q ss_pred             ceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCC
Q 001362          687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN  766 (1092)
Q Consensus       687 ~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~  766 (1092)
                                                               .....|...|.+++|+|+++.+++++.||.+++|+....
T Consensus       135 -----------------------------------------~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~  173 (371)
T d1k8kc_         135 -----------------------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  173 (371)
T ss_dssp             -----------------------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             -----------------------------------------ccccccccccccccccccccceeccccCcEEEEEeeccC
Confidence                                                     000126678899999999999999999999999997654


Q ss_pred             CcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCC
Q 001362          767 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT  845 (1092)
Q Consensus       767 ~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~  845 (1092)
                      .....      .....|+............  .+|...|.+++|+|+|++|++++ |+.|++||+.+++.+..+..|..+
T Consensus       174 ~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  245 (371)
T d1k8kc_         174 EVEER------PAPTPWGSKMPFGELMFES--SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP  245 (371)
T ss_dssp             TTSCC------CCCBTTBSCCCTTCEEEEC--CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCC
T ss_pred             ccccc------cccccccccccceeeeeec--cCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccccc
Confidence            32111      1112222222211111122  24888999999999999999998 799999999999999999999999


Q ss_pred             eEEEEEcCCCCCEEEEEeCCCcEEEEEcCC--ceee---------------------------------------Eeecc
Q 001362          846 ATSLAFNPHDNNVIAIGMDDSTILIYNARS--SEVI---------------------------------------SKLEG  884 (1092)
Q Consensus       846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~--~~~~---------------------------------------~~l~~  884 (1092)
                      |.+++|+| ++++|++|. |+.+++|....  +...                                       .....
T Consensus       246 v~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (371)
T d1k8kc_         246 LLAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL  323 (371)
T ss_dssp             EEEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSS
T ss_pred             ceeeeecC-CCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceeccc
Confidence            99999999 888888665 77666665432  1110                                       00123


Q ss_pred             ccCCeEEEEEcCCC----CEEEEEeCCCcEEEEEcCC
Q 001362          885 HSKRVTGLVFSDAL----NILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       885 h~~~V~~l~~spdg----~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      |.+.|+++++.+.+    ..++|+|.||.|+|||+++
T Consensus       324 H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             SSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence            88999999998754    4689999999999999976

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.2e-30  Score=283.16  Aligned_cols=290  Identities=12%  Similarity=0.174  Sum_probs=225.5

Q ss_pred             CceEEeecCCCceEEEEEcC-CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCC-CCcEEEEEECC--CCCEE
Q 001362          336 SPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSP--DGSLL  411 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~-d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h-~~~V~~l~~sp--dg~~l  411 (1092)
                      .+++++|+|+|+. +|.++. ...|+.||.........                 ..+.+| ...|++++|+|  +|++|
T Consensus        19 ~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~gh~~~~v~~v~fsP~~~g~~l   80 (325)
T d1pgua1          19 FTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPPV-----------------VQFTGHGSSVVTTVKFSPIKGSQYL   80 (325)
T ss_dssp             CCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCSE-----------------EEECTTTTSCEEEEEECSSTTCCEE
T ss_pred             CeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccce-----------------EEEeCCCCCCEEEEEEeeCCCCCEE
Confidence            5689999999995 555543 33456666544332211                 115566 56899999998  67899


Q ss_pred             EEEeCCCEEEEEEccCCCcccce-----EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001362          412 GVAYSKHIVQLYAYHGGSDARQQ-----LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~-----~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  486 (1092)
                      |+|+.||+|+|||+..++.....     ..+..|.++|.+++|+++++.+..++++.++.+++|++++++.+..+.+|..
T Consensus        81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  160 (325)
T d1pgua1          81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ  160 (325)
T ss_dssp             EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred             EEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc
Confidence            99999999999999876654322     1345688899999999999953333445678899999999999999999999


Q ss_pred             CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCCceEEEEEccC-CCEEEEEecCCCCceeEEEEeC
Q 001362          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~s~d-g~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      .|.+++|++.. ..++++++.||.+++||....+.....   ..+...|.+++|+|+ +.++++++.    ++.|++||.
T Consensus       161 ~v~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iwd~  235 (325)
T d1pgua1         161 RINACHLKQSR-PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFDG  235 (325)
T ss_dssp             CEEEEEECSSS-SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEET
T ss_pred             ccccccccccc-cceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceeeeee
Confidence            99999997653 246889999999999999876655543   345667999999997 577888876    566999999


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEc---CCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC-CCEEE
Q 001362          563 SEGAIKRTYQGLQLQHNSVSVVHFD---TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-GTLLA  638 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~  638 (1092)
                      .+++.+..+.+|.   ..+..+.|+   |++++|++++.|+.|+|||+++++.+..+..+.+...+..+++.+. +.+++
T Consensus       236 ~~~~~~~~l~~~~---~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (325)
T d1pgua1         236 KSGEFLKYIEDDQ---EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII  312 (325)
T ss_dssp             TTCCEEEECCBTT---BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred             ccccccccccccc---cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEE
Confidence            9999999999877   444444443   6889999999999999999999999999887766544555555543 45889


Q ss_pred             EEeCCCeEEEEEC
Q 001362          639 VIANENRIKILET  651 (1092)
Q Consensus       639 ~~~~dg~i~iw~~  651 (1092)
                      +++.||.|++||+
T Consensus       313 s~s~dg~i~vwdl  325 (325)
T d1pgua1         313 SLSLDGTLNFYEL  325 (325)
T ss_dssp             EEETTSCEEEEET
T ss_pred             EEECCCEEEEEEC
Confidence            9999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.2e-29  Score=275.21  Aligned_cols=286  Identities=13%  Similarity=0.141  Sum_probs=218.7

Q ss_pred             cEEEEEEecCCcEEEEeecCC-eeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCC-CCCeeEEEEec-
Q 001362          736 KISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS-QEAVPCFALSK-  812 (1092)
Q Consensus       736 ~i~~l~~s~~g~~l~~~~~dg-~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~-~~~v~~~~~s~-  812 (1092)
                      .+.+++|+|+|..++.++.+. .++.|+.....                    ......  +.  +| ...|++++|+| 
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~--------------------~~~~~~--~~--gh~~~~v~~v~fsP~   74 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK--------------------VPPVVQ--FT--GHGSSVVTTVKFSPI   74 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCS--------------------SCSEEE--EC--TTTTSCEEEEEECSS
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC--------------------ccceEE--Ee--CCCCCCEEEEEEeeC
Confidence            456789999999988876553 34444422111                    011111  11  24 56899999998 


Q ss_pred             -CCCEEEEEe-CCeEEEEEcCCceee--------EEecCCCCCeEEEEEcCCCCCEEEEEeC--CCcEEEEEcCCceeeE
Q 001362          813 -NDAYLFSAS-GGVISLYIVMTFKTI--------LTIMPPSPTATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVIS  880 (1092)
Q Consensus       813 -dg~~l~~~s-dg~i~iwd~~~~~~~--------~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg~v~iwd~~~~~~~~  880 (1092)
                       ++++|++++ ||+|+|||+..++..        ..+..|.+.|.+++|++ ++++|++++.  ++.+++|+.++++.+.
T Consensus        75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~  153 (325)
T d1pgua1          75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG  153 (325)
T ss_dssp             TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred             CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccce
Confidence             678999998 799999998754322        33556888999999999 8888887764  6789999999999999


Q ss_pred             eeccccCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC-CCEEEE-EeCC
Q 001362          881 KLEGHSKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHET  957 (1092)
Q Consensus       881 ~l~~h~~~V~~l~~spdg~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~la~-~~d~  957 (1092)
                      .+.+|...|.+++|+|++.+ +++++.|+.|++||+...+...  ......++.   ..|.+++|+|| +.++++ +.|+
T Consensus       154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d~  228 (325)
T d1pgua1         154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQG---SFVRDVEFSPDSGEFVITVGSDR  228 (325)
T ss_dssp             ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTT---CCEEEEEECSTTCCEEEEEETTC
T ss_pred             eeeecccccccccccccccceEEEeecccccccccccccccce--ecccccCCC---CccEEeeeccccceecccccccc
Confidence            99999999999999999875 7789999999999998755332  233333333   37999999997 577887 6889


Q ss_pred             cEEEEEcCCceeeeeeccCCCCCEEEEEEe---cCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccce
Q 001362          958 HLAIYEAEELTCLKQWFPISSVPISQATFS---CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus       958 ~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs---~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
                      .|++||+.+++.+.. +.+|..++.++.|+   +||++|++++.|++|+|||+.+++.+..+....      +...+..+
T Consensus       229 ~i~iwd~~~~~~~~~-l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~  301 (325)
T d1pgua1         229 KISCFDGKSGEFLKY-IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK------QQLGNQQV  301 (325)
T ss_dssp             CEEEEETTTCCEEEE-CCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCT------TCGGGCEE
T ss_pred             ceeeeeecccccccc-ccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecC------CcccCeEE
Confidence            999999999998887 45787777766666   789999999999999999999999987776222      12223445


Q ss_pred             EEEECCCCCCEEEEEeCCCcEEEEeC
Q 001362         1035 AIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus      1035 ~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
                      ++.+.+  +.+|++++.||+|++||+
T Consensus       302 ~~~~~~--~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         302 GVVATG--NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             EEEECC--CCEEEEEECCCEEEEEEC
Confidence            555554  468999999999999996

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=3.2e-27  Score=267.38  Aligned_cols=368  Identities=11%  Similarity=0.044  Sum_probs=265.7

Q ss_pred             eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001362          348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG  427 (1092)
Q Consensus       348 ~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~  427 (1092)
                      .++++.+.||+|.|||..+++++..                   +..| ..+..++|||||++|++++.|+.|.+||+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t   92 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM   92 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence            4578999999999999999999876                   3344 4699999999999999999999999999998


Q ss_pred             CCccc--ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEE
Q 001362          428 GSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI  505 (1092)
Q Consensus       428 ~~~~~--~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  505 (1092)
                      ++...  .+....+|.+.+.+.+|+|||++ ++++++.+++|++||.++++.+..+..|...+....+.+.+        
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~--------  163 (432)
T d1qksa2          93 KEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP--------  163 (432)
T ss_dssp             SSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC--------
T ss_pred             CCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCC--------
Confidence            76432  22223467778888899999995 45788999999999999999999998877666555443322        


Q ss_pred             ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001362          506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH  585 (1092)
Q Consensus       506 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  585 (1092)
                                               ....+.++|+|..++....   .++.|.+||..+++.........  ...+..++
T Consensus       164 -------------------------~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~--g~~~~~~~  213 (432)
T d1qksa2         164 -------------------------RVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISA--ERFLHDGG  213 (432)
T ss_dssp             -------------------------CEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEEC--CSSEEEEE
T ss_pred             -------------------------ceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcc--cCccccce
Confidence                                     3345678899988776653   25679999998877655444322  25688999


Q ss_pred             EcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCC---CCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCceeeec
Q 001362          586 FDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGG---LPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAA  660 (1092)
Q Consensus       586 ~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~  660 (1092)
                      |+|+++++++++ .++.+.++|..+++....+.....   ........+...+...++.. .++.+.+|.......    
T Consensus       214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~----  289 (432)
T d1qksa2         214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH----  289 (432)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC----
T ss_pred             ECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccc----
Confidence            999999888876 456789999999988887764321   11223333333344443332 255666665432210    


Q ss_pred             ccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEE
Q 001362          661 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL  740 (1092)
Q Consensus       661 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l  740 (1092)
                                                                                            ..+...+...
T Consensus       290 ----------------------------------------------------------------------~~~~~~v~~~  299 (432)
T d1qksa2         290 ----------------------------------------------------------------------PDNAWKILDS  299 (432)
T ss_dssp             ----------------------------------------------------------------------TTTBTSEEEE
T ss_pred             ----------------------------------------------------------------------cccccEEEEE
Confidence                                                                                  0144567778


Q ss_pred             EEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE
Q 001362          741 TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA  820 (1092)
Q Consensus       741 ~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~  820 (1092)
                      .+++++..+++++.+...++|......                                .|......+++ ||++.++++
T Consensus       300 ~~~~~g~~~~~~s~p~~~~lw~~~~~~--------------------------------~~~~~~~sv~v-pDg~~la~~  346 (432)
T d1qksa2         300 FPALGGGSLFIKTHPNSQYLYVDATLN--------------------------------PEAEISGSVAV-FDIKAMTGD  346 (432)
T ss_dssp             EECSCSCCCCEECCTTCSEEEEECTTC--------------------------------SSHHHHTCEEE-EEGGGCCCS
T ss_pred             EEcCCCCeEEEEecCCccceeecccCC--------------------------------CCCCeeeEEEE-Eechhhccc
Confidence            888888888888888888888643211                                12222334555 899999999


Q ss_pred             e-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe-----CCCcEEEEEcCCceeeEeeccc
Q 001362          821 S-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-----DDSTILIYNARSSEVISKLEGH  885 (1092)
Q Consensus       821 s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~-----~dg~v~iwd~~~~~~~~~l~~h  885 (1092)
                      + |+.+++|++.++..   +..|...+.+++||| ||++|+++.     .+|.|.|||..++++...+++.
T Consensus       347 s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         347 GSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             SSCCCEEEECHHHHHT---CCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             ccCCceEecccccccc---cCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence            8 68999999876533   335777899999999 888775553     4689999999999998888753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.7e-27  Score=251.93  Aligned_cols=269  Identities=11%  Similarity=0.131  Sum_probs=213.2

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      +.+++|+||.++|++++|+|     |++|+.||+|++||+.++                        ..+|...|.+++|
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~------------------------~~~h~~~V~~~~~   54 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM------------------------HQDHSNLIVSLDN   54 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE------------------------ECCCCSCEEEEEC
T ss_pred             ceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC------------------------CCCCCCCEEEEEe
Confidence            56789999999999999987     799999999999998764                        3469999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001362          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      ++++ .+++++.|++|++|++...+          ....+.++++++++.  .+++ +.++.+.+|+..+++.+..+..+
T Consensus        55 ~~~~-~~~s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~  120 (287)
T d1pgua2          55 SKAQ-EYSSISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TAVL-TNDDDLLILQSFTGDIIKSVRLN  120 (287)
T ss_dssp             CSTT-CCEEEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EEEE-ETTSEEEEEETTTCCEEEEEECS
T ss_pred             cCCC-eEEEEeeccccccccccccc----------cccceeeeeeccCCc--eEEE-eecccceeeeccceeeeeecccc
Confidence            9765 57889999999999986531          233467788999887  4554 45677999999999998888643


Q ss_pred             CcCeEEEeecccCCccEEEEEecC-CeEEEEEcCCCCceEEec-CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001362          485 GAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                       ..+.++..    ++..+++++.+ +.+++|++.......... .+...+.+++|+|++.+|++++.    ++.|++||.
T Consensus       121 -~~~~~~~~----~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~  191 (287)
T d1pgua2         121 -SPGSAVSL----SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYDL  191 (287)
T ss_dssp             -SCEEEEEE----CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred             -ceeeeeec----cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----cccccceee
Confidence             44544433    34566666666 579999987666555544 35668999999999999999986    556999999


Q ss_pred             CCCeEEEE-EeeccccCCceEEEEEcCC----------CCEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCCCceEEE
Q 001362          563 SEGAIKRT-YQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       563 ~~~~~~~~-~~~~~~~~~~v~~~~~~p~----------~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                      .++..... +.+|.   ..|.+++|+|.          +.++++|+.|++|++||+++ ++.+..+..|  ...|.+++|
T Consensus       192 ~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h--~~~V~~v~~  266 (287)
T d1pgua2         192 QSREVKTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH--KDGVNNLLW  266 (287)
T ss_dssp             TTTEEEECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS--TTCEEEEEE
T ss_pred             cccccccccccccc---cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC--CCCeEEEEE
Confidence            99887553 45555   88999999875          46899999999999999977 4555555544  456999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEEC
Q 001362          631 NKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       631 s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      +|++ .+++++.|+.|++|++
T Consensus       267 ~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         267 ETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EETT-EEEEEETTSCEEEEEE
T ss_pred             CCCC-EEEEEECCCeEEEEEE
Confidence            9986 5889999999999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-25  Score=240.70  Aligned_cols=274  Identities=20%  Similarity=0.285  Sum_probs=220.2

Q ss_pred             eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001362          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      ++...+|+..|+|++|  ||+ +||+|+.||+|+|||+.+++++.+                   +.+|.+.|.+++|  
T Consensus         8 i~~~~~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--   63 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--   63 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--
T ss_pred             EeccCCCCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EecCCCCEeeeec--
Confidence            4556788889998765  787 699999999999999999998875                   7789999999887  


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce---eEEEec
Q 001362          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEG  483 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~  483 (1092)
                      ++++|++|+.|+.|++|++..+....   ....+..  ....+.+...  .++++..++.+.+||..+...   ...+..
T Consensus        64 ~~~~l~s~s~D~~i~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (293)
T d1p22a2          64 DERVIITGSSDSTVRVWDVNTGEMLN---TLIHHCE--AVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVG  136 (293)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCEEE---EECCCCS--CEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred             ccceeecccccccccccccccccccc---ccccccc--cccccccccc--ceeecccccceeEeeccccccccccccccc
Confidence            67899999999999999999886443   2222322  2334445555  689999999999999887654   345567


Q ss_pred             CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001362          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      |...+..+.+.    ...+++++.|+.|++||.++.+....+..+...+..+.++  +..+++++.    ++.|++||..
T Consensus       137 ~~~~v~~~~~~----~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~  206 (293)
T d1p22a2         137 HRAAVNVVDFD----DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIE  206 (293)
T ss_dssp             CSSCEEEEEEE----TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETT
T ss_pred             cccccccceec----ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecc
Confidence            88888877763    2578999999999999999999888888888888776664  568888876    5669999999


Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CceEEEEeCCCCCCCCceEEEccCC
Q 001362          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---------VQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      ++..+..+.++.   ..+..  +.+++.++++++.||.|++||+..         ...+..+..|.  ..|.+++|+  +
T Consensus       207 ~~~~~~~~~~~~---~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~--~~V~~v~~d--~  277 (293)
T d1p22a2         207 CGACLRVLEGHE---ELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQFD--E  277 (293)
T ss_dssp             TCCEEEEECCCS---SCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEEC--S
T ss_pred             cceeeeeecccc---eeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCC--CCEEEEEEc--C
Confidence            999999888876   56654  567788999999999999999643         34566776654  468899884  6


Q ss_pred             CEEEEEeCCCeEEEEE
Q 001362          635 TLLAVIANENRIKILE  650 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~  650 (1092)
                      ++|++++.||+|++||
T Consensus       278 ~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         278 FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCEEECCSSSEEEEEC
T ss_pred             CEEEEEecCCEEEEeC
Confidence            7899999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2e-26  Score=246.96  Aligned_cols=270  Identities=10%  Similarity=0.089  Sum_probs=217.9

Q ss_pred             ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCcccc
Q 001362          655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA  734 (1092)
Q Consensus       655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~  734 (1092)
                      ++++.+.+|...|++++++                      |    +++|+.||+|++|+.....           ..|.
T Consensus         4 ~~i~~l~gH~~~I~~l~~s----------------------~----l~sgs~Dg~v~~Wd~~~~~-----------~~h~   46 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVN----------------------P----LISGSYDGRIMEWSSSSMH-----------QDHS   46 (287)
T ss_dssp             EEEEEECCCSSCEEEEETT----------------------T----TEEEETTSCEEETTTTEEE-----------CCCC
T ss_pred             ceeEEECCCCCceEEEEEC----------------------c----EEEEeCCCeEEEEECCCCC-----------CCCC
Confidence            5778899999999999886                      2    8999999999999976432           2488


Q ss_pred             ccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001362          735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1092)
Q Consensus       735 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg  814 (1092)
                      ..|.++++++++. +++++.|+.+++|++....                                 ....+.++++++++
T Consensus        47 ~~V~~~~~~~~~~-~~s~s~D~~v~~w~~~~~~---------------------------------~~~~~~~~~~~~~~   92 (287)
T d1pgua2          47 NLIVSLDNSKAQE-YSSISWDDTLKVNGITKHE---------------------------------FGSQPKVASANNDG   92 (287)
T ss_dssp             SCEEEEECCSTTC-CEEEETTTEEEETTEEEEE---------------------------------CSSCEEEEEECSSS
T ss_pred             CCEEEEEecCCCe-EEEEeeccccccccccccc---------------------------------cccceeeeeeccCC
Confidence            8999999997765 7889999999999865321                                 33457788999999


Q ss_pred             CEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-cEEEEEcCCceeeEeec-cccCCeEEE
Q 001362          815 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLE-GHSKRVTGL  892 (1092)
Q Consensus       815 ~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~-~h~~~V~~l  892 (1092)
                      ..++++.++.+.+|+..+++.+..+..+ ..+  .++++ ++..+++++.++ .+++|++...+....+. .|.+.|+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~  168 (287)
T d1pgua2          93 FTAVLTNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI  168 (287)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECS-SCE--EEEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE
T ss_pred             ceEEEeecccceeeeccceeeeeecccc-cee--eeeec-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEE
Confidence            9999888899999999999988887643 333  45666 566777777765 79999998776655554 488899999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC----------CCEEEE-EeCCcEEE
Q 001362          893 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD----------QTRFLL-VHETHLAI  961 (1092)
Q Consensus       893 ~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d----------g~~la~-~~d~~i~l  961 (1092)
                      +|+|++++|++++.||.|++||+.+++..    .....+|..   .|.+++|+|+          +.++++ +.|++|++
T Consensus       169 ~~s~~~~~l~~g~~dg~i~i~d~~~~~~~----~~~~~~h~~---~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~i  241 (287)
T d1pgua2         169 SISPSETYIAAGDVMGKILLYDLQSREVK----TSRWAFRTS---KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI  241 (287)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEE----ECCSCCCSS---CEEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred             EeccCccccccccccccccceeecccccc----ccccccccc---ccceeeecccccccccccCCCCeeEeecCCCeEEE
Confidence            99999999999999999999999986532    223344443   7999999875          467887 67899999


Q ss_pred             EEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001362          962 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       962 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
                      ||+.++........+|...|++++|+|++ .|+|++.||+|++|++
T Consensus       242 w~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         242 YSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            99987555555577999999999999987 5889999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.5e-27  Score=258.50  Aligned_cols=297  Identities=9%  Similarity=0.013  Sum_probs=216.3

Q ss_pred             ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ++++.+++|++.|++|+|||+|+ +||+|+.||+|+|||++++.......                ...+|..+|.+++|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~----------------~~~~h~~~V~~v~f   64 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLL----------------QSLRYKHPLLCCNF   64 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEE----------------EEEECSSCEEEEEE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceEEE----------------EecCCCCCEEEEEE
Confidence            35678899999999999999998 68999999999999998776443211                13369999999999


Q ss_pred             CCC-CCEEEEEeCCCEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-
Q 001362          405 SPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-  481 (1092)
Q Consensus       405 spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-  481 (1092)
                      +|+ +.+|++|+.|+.|++|++..+....   ....+. .......+.+++.  .+++++.|+++++||++++...... 
T Consensus        65 ~~~~~~~l~sg~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~  139 (342)
T d1yfqa_          65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQ---ALTNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             EESSSEEEEEEETTSCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred             eCCCCCEEEEcccccceeeeecccccccc---cccccccccccccccccccc--cccccccccccceeeccccccceeee
Confidence            986 5689999999999999999876544   233333 3344555666666  7999999999999998765433222 


Q ss_pred             ---ecCCcC--eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCceEEEEEc-cCCCEEEEEecCCC
Q 001362          482 ---EGHGAP--VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYS-ANGRRLFSCGTSKE  552 (1092)
Q Consensus       482 ---~~~~~~--v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s-~dg~~l~~~~~~~~  552 (1092)
                         ..+...  .....+  ..++..+++++.||.|++||+.......   ........+.+..+. .++..+++++.   
T Consensus       140 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---  214 (342)
T d1yfqa_         140 KNLNSNNTKVKNKIFTM--DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI---  214 (342)
T ss_dssp             EESCSSSSSSCCCEEEE--EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET---
T ss_pred             cccccccccceeeeeee--eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC---
Confidence               222222  222333  3355789999999999999998766433   233334445555554 46677777765   


Q ss_pred             CceeEEEEeCCCCeEE------EEE------eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC
Q 001362          553 GESFLVEWNESEGAIK------RTY------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~------~~~------~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  620 (1092)
                       ++.+.+|+.......      ..+      ..+..+...+.+++|+|++++|++|+.||.|++||+.+++.+..+..+.
T Consensus       215 -dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~  293 (342)
T d1yfqa_         215 -DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN  293 (342)
T ss_dssp             -TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred             -CCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence             556888876543211      111      1112234678999999999999999999999999999999988875432


Q ss_pred             CCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001362          621 GLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                         ....++|+|+++++++++.|+.+++|...
T Consensus       294 ---~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         294 ---EDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             ---SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             ---CCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence               35678999999999999999888877543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=8.2e-26  Score=256.82  Aligned_cols=367  Identities=9%  Similarity=0.012  Sum_probs=247.0

Q ss_pred             eEEeecCCCc-eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001362          338 MSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  416 (1092)
Q Consensus       338 ~~v~~spdg~-~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~  416 (1092)
                      ..+.+++|.+ .++++++.||+|+|||+.+++.+.+                   +..| ..+..++|||||++|++++.
T Consensus        22 ~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~   81 (426)
T d1hzua2          22 KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGR   81 (426)
T ss_dssp             SSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEET
T ss_pred             CcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeC
Confidence            3345666654 3457788899999999999998876                   4445 46999999999999999999


Q ss_pred             CCEEEEEEccCCCccc--ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeec
Q 001362          417 KHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  494 (1092)
                      |++|++||+.+++...  .+....+|.+.+.+++|+|||++ +++++..++.+++||..++.++..+.+|...+..+.+.
T Consensus        82 d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  160 (426)
T d1hzua2          82 DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH  160 (426)
T ss_dssp             TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred             CCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeec
Confidence            9999999999987543  12223467788889999999995 45667789999999999999999998888777766664


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE-EEee
Q 001362          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQG  573 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~  573 (1092)
                      +.+. ...                                +.+++++..++....   +.+.+.+++...+.... ....
T Consensus       161 ~~~~-~~~--------------------------------i~~s~d~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~  204 (426)
T d1hzua2         161 PEPR-VAA--------------------------------IIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTSIG  204 (426)
T ss_dssp             SCCC-EEE--------------------------------EEECSSSSEEEEEET---TTTEEEEEECSSSSSCEEEEEE
T ss_pred             CCCc-eeE--------------------------------EEECCCCCEEEEecC---CCCeEEEEEeccccceeeEEec
Confidence            4322 122                                334444444444332   13335555554443222 2223


Q ss_pred             ccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCE-EE--EEeCCCeEEEE
Q 001362          574 LQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL-LA--VIANENRIKIL  649 (1092)
Q Consensus       574 ~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~--~~~~dg~i~iw  649 (1092)
                      +.   ..+..+.|+|++++++++. .+..+.+++..+++.+................+...+.. +.  ..+.|+.+.+|
T Consensus       205 ~~---~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~  281 (426)
T d1hzua2         205 AA---PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLI  281 (426)
T ss_dssp             CC---SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEE
T ss_pred             cC---CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEe
Confidence            33   6788999999999988876 566789999999999888775544333333333332221 11  11123333333


Q ss_pred             ECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccC
Q 001362          650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP  729 (1092)
Q Consensus       650 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~  729 (1092)
                      +....                                                      .                    
T Consensus       282 ~~~~~------------------------------------------------------~--------------------  287 (426)
T d1hzua2         282 GTDPK------------------------------------------------------N--------------------  287 (426)
T ss_dssp             ECCTT------------------------------------------------------T--------------------
T ss_pred             ecccc------------------------------------------------------c--------------------
Confidence            32211                                                      0                    


Q ss_pred             CccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001362          730 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA  809 (1092)
Q Consensus       730 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~  809 (1092)
                                                                           |....+......  .  +|...+..++
T Consensus       288 -----------------------------------------------------~~~~~~~~~~~l--~--g~~~~v~~v~  310 (426)
T d1hzua2         288 -----------------------------------------------------HPQYAWKKVAEL--Q--GQGGGSLFIK  310 (426)
T ss_dssp             -----------------------------------------------------CTTTBTSEEEEE--E--CSSSCCCCEE
T ss_pred             -----------------------------------------------------cccccceEeEEE--e--cCCCceeEEE
Confidence                                                                 000111111111  1  3677788899


Q ss_pred             EecCCCEEEEE-------e-CCeEEEEEcCCceeeEEe---------cCCCCCeEEEEEcCCCCCEEEE-E----eCCCc
Q 001362          810 LSKNDAYLFSA-------S-GGVISLYIVMTFKTILTI---------MPPSPTATSLAFNPHDNNVIAI-G----MDDST  867 (1092)
Q Consensus       810 ~s~dg~~l~~~-------s-dg~i~iwd~~~~~~~~~~---------~~~~~~i~~l~~s~~d~~~las-g----~~dg~  867 (1092)
                      |+||+++|++.       + +++|+|||+.+++...++         ..+...+.+++||| ||++++. +    +.+|.
T Consensus       311 ~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~  389 (426)
T d1hzua2         311 THPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSA  389 (426)
T ss_dssp             CCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCE
T ss_pred             cCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCe
Confidence            99999999853       2 578999999998876554         24566799999999 8876643 3    35788


Q ss_pred             EEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEE
Q 001362          868 ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV  902 (1092)
Q Consensus       868 v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~  902 (1092)
                      |+|||..+++....+.++.      .++|+|++-+
T Consensus       390 i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~  418 (426)
T d1hzua2         390 LVVVDDKTLKLKAVVKDPR------LITPTGKFNV  418 (426)
T ss_dssp             EEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred             EEEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence            9999999999999988775      3467777643

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.1e-26  Score=255.15  Aligned_cols=291  Identities=12%  Similarity=0.091  Sum_probs=212.2

Q ss_pred             eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEE----
Q 001362          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV----  402 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l----  402 (1092)
                      ....++|.+.|.++++++  + ++++|+.|++|+|||..+.+......          ...   ....|...+..+    
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~-~l~S~S~D~~iriWd~~~~~~~~~~~----------~~~---~~~~~~~~~~~~~~~~   70 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD----------KSY---SHFVHKSGLHHVDVLQ   70 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG----------GEE---EEECCTTCEEEEEEEE
T ss_pred             eecCCcccCccEEEEEeC--C-EEEEEECCCeEEEEECCCCCCCcccc----------eeE---eeeeccCCceEeeeEe
Confidence            466789999999999976  4 58899999999999987765322100          000   022344443332    


Q ss_pred             --EECC-CCCEEEEEeCCCEEEEEEccCCCcccceEE-------EcccccceeEEEEecCCC---cEEEEEEeCCCcEEE
Q 001362          403 --VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLE-------IDAHVGNVNDLAFSAPCK---QISVITCGDDKTIKV  469 (1092)
Q Consensus       403 --~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~-------~~~h~~~v~~~~~s~d~~---~l~l~s~~~d~~i~v  469 (1092)
                        ..++ ++.++++++.||.|++|++..+........       ...+...+..++|.+++.   ..++++++.|+++++
T Consensus        71 ~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~v  150 (393)
T d1sq9a_          71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI  150 (393)
T ss_dssp             EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred             eeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEE
Confidence              2222 346788999999999999886654332211       113455678888887642   126899999999999


Q ss_pred             EECCCCce------------------eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE------e
Q 001362          470 WDAVTGSR------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD------Y  525 (1092)
Q Consensus       470 wd~~~~~~------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~------~  525 (1092)
                      |++.....                  ......+...+.+++|++  ++ +|++|+.||+|++||+.+.+....      +
T Consensus       151 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l  227 (393)
T d1sq9a_         151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSM  227 (393)
T ss_dssp             EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred             EEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECC--CC-EEEEEeCCCcEEEEeeccccccccccccccc
Confidence            99743210                  111123456688888865  44 899999999999999998876553      3


Q ss_pred             cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe-------------eccccCCceEEEEEcCCCCE
Q 001362          526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-------------GLQLQHNSVSVVHFDTAKDQ  592 (1092)
Q Consensus       526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-------------~~~~~~~~v~~~~~~p~~~~  592 (1092)
                      ..|..+|.+++|+|||++|++++.++. .+.|++||+.+++.+..+.             +|.   ..|.+++|+|++++
T Consensus       228 ~~h~~~V~~l~~spdg~~l~sgs~D~t-~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~---~~V~~l~fspd~~~  303 (393)
T d1sq9a_         228 INNSNSIRSVKFSPQGSLLAIAHDSNS-FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVMSLSFNDSGET  303 (393)
T ss_dssp             -CCCCCEEEEEECSSTTEEEEEEEETT-EEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEEEEEECSSSSE
T ss_pred             ccccceEEEcccccccceeeeecCCCC-cceeeecccccceeeeeeccccccccceeeeeccc---CceeeeccCCCCCe
Confidence            457789999999999999999986432 4579999999999888775             454   88999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCC--CCceEEEccCCCEEEEE
Q 001362          593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP--ENPRICFNKNGTLLAVI  640 (1092)
Q Consensus       593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~v~~s~~~~~l~~~  640 (1092)
                      |++++.|++|++||+++++++.++..|....  ....++|+|++..++++
T Consensus       304 l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         304 LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             eEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence            9999999999999999999999998774321  12358899999877644

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.4e-25  Score=252.25  Aligned_cols=271  Identities=11%  Similarity=0.099  Sum_probs=201.0

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc---cceEEEcccccceeEEEE------ecCCCcEEEEEE
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAF------SAPCKQISVITC  461 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~------s~d~~~l~l~s~  461 (1092)
                      ..++|.+.|.++++++  ++|++++.|++|+|||..+.+..   ........|...+..+..      +.... .+++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~   85 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL-CLVATT   85 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE-EEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC-cEEEEE
Confidence            3678999999999874  69999999999999998765431   122223344443332222      21111 267899


Q ss_pred             eCCCcEEEEECCCCceeEEE----------ecCCcCeEEEeecccC---CccEEEEEecCCeEEEEEcCCCCc-------
Q 001362          462 GDDKTIKVWDAVTGSRTYSF----------EGHGAPVYSLCPHAKE---NIHFIFSISVDGKIKAWLYDSLGA-------  521 (1092)
Q Consensus       462 ~~d~~i~vwd~~~~~~~~~~----------~~~~~~v~~~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~-------  521 (1092)
                      +.||.|++|++..+.....+          ..+...+..+++.+..   .+.++++++.||.+++|++.....       
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            99999999997654332211          1234456667665543   257899999999999999853321       


Q ss_pred             -----------eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc---ccCCceEEEEEc
Q 001362          522 -----------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ---LQHNSVSVVHFD  587 (1092)
Q Consensus       522 -----------~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~  587 (1092)
                                 ......+...+.+++|+|++ ++++++.    ++.|++||+.+++.+..+....   .|...|.+++|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeC----CCcEEEEeecccccccccccccccccccceEEEcccc
Confidence                       00112234458899999998 7788765    6789999999999887665321   234899999999


Q ss_pred             CCCCEEEEEeCCCc---EEEEECCCCceEEEEeCC-----------CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001362          588 TAKDQILAAGDDHV---IKIWDMNKVQLLTTIDAG-----------GGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       588 p~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      |++++|++|+.|++   |++||+++++.+..+...           +|...|.+++|+|++++|++++.|++|++||+.+
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            99999999998874   899999999998887532           3456799999999999999999999999999999


Q ss_pred             CceeeecccccCceee
Q 001362          654 SNSVDAAGVLSDNLRK  669 (1092)
Q Consensus       654 ~~~~~~~~~~~~~v~~  669 (1092)
                      ++++..+.+|.+.|..
T Consensus       321 g~~~~~l~gH~~~v~~  336 (393)
T d1sq9a_         321 KERITTLNMHCDDIEI  336 (393)
T ss_dssp             TEEEEEEECCGGGCSS
T ss_pred             CCEEEEECCcCCcccC
Confidence            9999999999988853

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-24  Score=233.75  Aligned_cols=271  Identities=16%  Similarity=0.254  Sum_probs=219.5

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      ..+|...|+|++|  ||++||+|+.||+|+|||+.++++++   ++.+|.+.|++++|  +++  +|++|+.|+.|++|+
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~   81 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD   81 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence            5568889998764  79999999999999999999987665   78899999999887  566  799999999999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCceEEEEEccCCCEEEEEe
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      +..+........+.........    ....++++..++.+++|+........   ....+...+..+.+.  ...+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s  155 (293)
T d1p22a2          82 VNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS  155 (293)
T ss_dssp             SSSCCEEEEECCCCSCEEEEEC----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred             cccccccccccccccccccccc----cccceeecccccceeEeeccccccccccccccccccccccceec--cccccccc
Confidence            9999888877665555544332    34589999999999999998766433   445566677666654  45566666


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001362          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1092)
                      .    ++.+++||..+++.+..+.++.   ..+..+.++  +..+++++.||.|++||+.+...+.....+..    ...
T Consensus       156 ~----d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~v~  222 (293)
T d1p22a2         156 G----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE----LVR  222 (293)
T ss_dssp             T----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS----CEE
T ss_pred             C----CCceeeecCCCCcEEEEEcccc---cccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce----eee
Confidence            4    6679999999999999998877   777777665  56899999999999999999999888875533    234


Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCC---------CceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCc
Q 001362          629 CFNKNGTLLAVIANENRIKILETPE---------SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK  699 (1092)
Q Consensus       629 ~~s~~~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  699 (1092)
                      .+++++.+|++++.||.|++||+..         ...+..+.+|...|.+++++                        ++
T Consensus       223 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d------------------------~~  278 (293)
T d1p22a2         223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EF  278 (293)
T ss_dssp             EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SS
T ss_pred             eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc------------------------CC
Confidence            5678899999999999999999653         24567778888888877664                        56


Q ss_pred             cceeeccccccceec
Q 001362          700 PEISVEAENKSEVEK  714 (1092)
Q Consensus       700 ~l~s~~~d~~i~lw~  714 (1092)
                      ++++++.|++|++||
T Consensus       279 ~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         279 QIVSSSHDDTILIWD  293 (293)
T ss_dssp             CEEECCSSSEEEEEC
T ss_pred             EEEEEecCCEEEEeC
Confidence            799999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.8e-26  Score=250.99  Aligned_cols=265  Identities=10%  Similarity=-0.016  Sum_probs=197.8

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001362          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      ++.+|++.|++|+|||++++||+|+.||+|+|||+.++..........+|.++|.+++|+|++.. +|++|+.|+.|++|
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence            37789999999999999999999999999999999887655444445579999999999998654 79999999999999


Q ss_pred             ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe----cC--CCCceEEEEEccCCCEE
Q 001362          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----DA--PGLGCTRMAYSANGRRL  544 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~--~~~~i~~~~~s~dg~~l  544 (1092)
                      ++..+........+...+....+.. .+...+++++.++.+++||++........    ..  .........+.+++..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL  163 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred             ecccccccccccccccccccccccc-cccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence            9999888777766655554443332 34578999999999999998754433221    11  12244566788889999


Q ss_pred             EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceE------EEEe
Q 001362          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLL------TTID  617 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~s~dg~i~iwd~~~~~~~------~~~~  617 (1092)
                      ++++.    ++.|++||+.++...............+.+..+. .++..+++++.||.+.+|+.......      ....
T Consensus       164 ~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~  239 (342)
T d1yfqa_         164 IVGMN----NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             EEEES----TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             eeecC----CCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence            99876    6679999998776544433333223455555554 45678899999999999987653211      1111


Q ss_pred             -------CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001362          618 -------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       618 -------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                             ...+...+.+++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus       240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~  290 (342)
T d1yfqa_         240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec
Confidence                   11233457899999999999999999999999999887766553

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=7.3e-27  Score=259.60  Aligned_cols=316  Identities=15%  Similarity=0.091  Sum_probs=220.5

Q ss_pred             eEEeecC-CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001362          338 MSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  416 (1092)
Q Consensus       338 ~~v~~sp-dg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~  416 (1092)
                      ..-.||| ||+ ++|+++. |.|.|||+.++..+.                    + +|...|.+++|||||++|++++.
T Consensus         6 ~~~~fSP~dG~-~~a~~~~-g~v~v~d~~~~~~~~--------------------~-~~~~~v~~~~~spDg~~l~~~~~   62 (360)
T d1k32a3           6 FAEDFSPLDGD-LIAFVSR-GQAFIQDVSGTYVLK--------------------V-PEPLRIRYVRRGGDTKVAFIHGT   62 (360)
T ss_dssp             GEEEEEECGGG-CEEEEET-TEEEEECTTSSBEEE--------------------C-SCCSCEEEEEECSSSEEEEEEEE
T ss_pred             hcccccCCCCC-EEEEEEC-CeEEEEECCCCcEEE--------------------c-cCCCCEEEEEECCCCCEEEEEEc
Confidence            3467999 999 4677654 899999999887653                    2 59999999999999999998765


Q ss_pred             CC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeec
Q 001362          417 KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       417 d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  494 (1092)
                      +.  .|++||+++++..    .+..|...|.+++|+|||+  +|++++.++.+++|++.+++....+..|...+.+++|+
T Consensus        63 ~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  136 (360)
T d1k32a3          63 REGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS  136 (360)
T ss_dssp             TTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred             CCCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhc
Confidence            53  7999999987643    4678999999999999999  89999999999999999999999999999999999995


Q ss_pred             ccCCccEEEEEe----------cCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001362          495 AKENIHFIFSIS----------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       495 ~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      +  ||++|+.+.          .++.+++|++.+.+.. ....+...+..++|+|||++|++++.    ++.+.+||...
T Consensus       137 p--dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s~----~~~~~~~d~~~  209 (360)
T d1k32a3         137 D--NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSY----RSLDPSPDRVV  209 (360)
T ss_dssp             T--TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEES----CCCCCEECSSS
T ss_pred             c--ceeeeeeeccccccceeeccccceeeeccccCcee-eecccccccccccccCCCCEEEEEeC----CCceEcccccc
Confidence            4  677887653          3456999999876543 44456667889999999999999875    44588898765


Q ss_pred             CeEE-------EEEeeccccCCceEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001362          565 GAIK-------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       565 ~~~~-------~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      ....       ..+..+.   ..+..+.|++++..+.++..+..     +..++...+.                     
T Consensus       210 ~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  265 (360)
T d1k32a3         210 LNFSFEVVSKPFVIPLIP---GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD---------------------  265 (360)
T ss_dssp             SCEECCSCBEEEEEESST---TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC---------------------
T ss_pred             cceeeccccceEEEeccc---CccccceECCCcCcccccceeecccccceeecccCcCc---------------------
Confidence            5432       1122222   33333445555554443322211     1111111111                     


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001362          633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1092)
Q Consensus       633 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l  712 (1092)
                         .......++.+..+.....                                        ++++.++++++.++.+++
T Consensus       266 ---~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~i~~  302 (360)
T d1k32a3         266 ---YRMIIPLESSILIYSVPVH----------------------------------------GEFAAYYQGAPEKGVLLK  302 (360)
T ss_dssp             ---EEEEEECSSEEEEEECCCC----------------------------------------CSHHHHHHCCCCCEEEEE
T ss_pred             ---eeEeeecCCCceEEEEEec----------------------------------------CCCeeEEEecCCCCEEEE
Confidence               1111111111111111000                                        234556667777777778


Q ss_pred             eccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCC
Q 001362          713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN  766 (1092)
Q Consensus       713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~  766 (1092)
                      ||+...+.          ..+.+.|.+++|+|||++|++++.||.|++|++..+
T Consensus       303 ~d~~~~~~----------~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~  346 (360)
T d1k32a3         303 YDVKTRKV----------TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP  346 (360)
T ss_dssp             EETTTCCE----------EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred             EECCCCeE----------EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence            87654321          124567899999999999999999999999998654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=2.5e-25  Score=251.68  Aligned_cols=352  Identities=9%  Similarity=0.050  Sum_probs=258.8

Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEeCC-CCCCCCceEEE
Q 001362          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAG-GGLPENPRICF  630 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~-~~~~~v~~v~~  630 (1092)
                      ++.|.+||..+++.+..+..+.    .+..++|+|||+++++++.|+++++||+.+++.  ...+... .+...+.+.+|
T Consensus        41 ~g~v~v~D~~t~~v~~~~~~g~----~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~  116 (432)
T d1qksa2          41 AGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKME  116 (432)
T ss_dssp             TTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCST
T ss_pred             CCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEeccc
Confidence            6679999999999999998754    589999999999999999999999999988764  3333321 11122344567


Q ss_pred             ccCCCEE-EEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccc
Q 001362          631 NKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  709 (1092)
Q Consensus       631 s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~  709 (1092)
                      +|||++| ++++.++.+++||..+++.+..+..+...+....+.                                    
T Consensus       117 SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~------------------------------------  160 (432)
T d1qksa2         117 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH------------------------------------  160 (432)
T ss_dssp             TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE------------------------------------
T ss_pred             CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceecc------------------------------------
Confidence            7899986 677789999999999998887766544433222222                                    


Q ss_pred             cceeccccccCccccccccCCccccccEEEEEEecCCcEEEEe-ecCCeeEEEeecCCCcCcCcccccccCCccccCCCC
Q 001362          710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  788 (1092)
Q Consensus       710 i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g  788 (1092)
                                             +......+.++++|..++.. ..++.+.+|+.....                     
T Consensus       161 -----------------------~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~---------------------  196 (432)
T d1qksa2         161 -----------------------PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN---------------------  196 (432)
T ss_dssp             -----------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS---------------------
T ss_pred             -----------------------CCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCC---------------------
Confidence                                   33456678899999876544 456888888754321                     


Q ss_pred             CceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC-----CCCCeEEEEEcCCCCCEEEE
Q 001362          789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAI  861 (1092)
Q Consensus       789 ~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~las  861 (1092)
                       ......+   .+...+..++|+|||+++++++  ++.+.++|..+++.+..+..     |........+.. .+...++
T Consensus       197 -~~~~~~i---~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~~~~  271 (432)
T d1qksa2         197 -NLKTTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPVWAT  271 (432)
T ss_dssp             -EEEEEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEEEEE
T ss_pred             -cceEEEE---cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC-CCceecc
Confidence             1111111   1445678999999999998887  47899999999888776542     334455556655 5655555


Q ss_pred             Ee-CCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001362          862 GM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET  940 (1092)
Q Consensus       862 g~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  940 (1092)
                      .. .++.|.+|+.....    ...|...|....++|++..+++++.+.+.++|+..+..           .+..   ...
T Consensus       272 ~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~-----------~~~~---~~~  333 (432)
T d1qksa2         272 SHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN-----------PEAE---ISG  333 (432)
T ss_dssp             EBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC-----------SSHH---HHT
T ss_pred             cccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC-----------CCCC---eee
Confidence            43 37889999876543    35678889999999999999999999999999876522           1111   133


Q ss_pred             EEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEE-----CCCcEEEEEcCCCceEE
Q 001362          941 HIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNLEVQC 1014 (1092)
Q Consensus       941 ~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~-----~Dg~i~vwd~~~~~~~~ 1014 (1092)
                      ++++ ||++.+++ +.|+.+++|++.++..+    ..|...|.+++|||||++|+.+.     .+|.|.|||..++++..
T Consensus       334 sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l----~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~  408 (432)
T d1qksa2         334 SVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI----TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH  408 (432)
T ss_dssp             CEEE-EEGGGCCCSSSCCCEEEECHHHHHTC----CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             EEEE-EechhhcccccCCceEeccccccccc----CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEe
Confidence            4555 99999998 67899999998766433    35677899999999999887664     46889999999999987


Q ss_pred             eec
Q 001362         1015 RIL 1017 (1092)
Q Consensus      1015 ~~~ 1017 (1092)
                      .+.
T Consensus       409 ~i~  411 (432)
T d1qksa2         409 VIK  411 (432)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            775

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1.6e-24  Score=246.10  Aligned_cols=346  Identities=8%  Similarity=0.050  Sum_probs=236.5

Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe--CC-CCCCCCceEEE
Q 001362          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--AG-GGLPENPRICF  630 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~--~~-~~~~~v~~v~~  630 (1092)
                      ++.|++||..+++.+.++..+.    .+..++|+|||+++++++.|++|++||+.+++......  .. ++...+.+++|
T Consensus        41 dg~v~vwD~~t~~~~~~l~~g~----~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~  116 (426)
T d1hzua2          41 AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFK  116 (426)
T ss_dssp             TTEEEEEETTTCSEEEEEECCS----SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCST
T ss_pred             CCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeee
Confidence            7789999999999999998765    58999999999999999999999999999987654432  21 11122445677


Q ss_pred             ccCCCEEEEE-eCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccc
Q 001362          631 NKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  709 (1092)
Q Consensus       631 s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~  709 (1092)
                      +|||++++++ ..++.+++||..++........+...+....+.                                    
T Consensus       117 spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~------------------------------------  160 (426)
T d1hzua2         117 GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH------------------------------------  160 (426)
T ss_dssp             TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE------------------------------------
T ss_pred             cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeec------------------------------------
Confidence            8899987555 578999999999998887776655544333332                                    


Q ss_pred             cceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-CeeEEEeecCCCcCcCcccccccCCccccCCCC
Q 001362          710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  788 (1092)
Q Consensus       710 i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g  788 (1092)
                                             +......+.+++++..++....+ +.+.+++....                      
T Consensus       161 -----------------------~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~----------------------  195 (426)
T d1hzua2         161 -----------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI----------------------  195 (426)
T ss_dssp             -----------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSS----------------------
T ss_pred             -----------------------CCCceeEEEECCCCCEEEEecCCCCeEEEEEeccc----------------------
Confidence                                   22234455667777666555443 44444432211                      


Q ss_pred             CceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCC--CCCeEEEEEcCCCCCEE--EEE
Q 001362          789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVI--AIG  862 (1092)
Q Consensus       789 ~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~l--asg  862 (1092)
                      ........   ++...+..++|+|++++++++.  +..+.+++..+++.+......  ........+.......+  +..
T Consensus       196 ~~~~~~~~---~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (426)
T d1hzua2         196 DNLTVTSI---GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH  272 (426)
T ss_dssp             SSCEEEEE---ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred             cceeeEEe---ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence            10111111   2567788999999999999887  477999999999988766432  22223333333122222  223


Q ss_pred             eCCCcEEEEEcCC-------ceeeEeeccccCCeEEEEEcCCCCEEEE-------EeCCCcEEEEEcCCCceeeee-eee
Q 001362          863 MDDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVS-------SGGDAQIFVWDVDGWGIQTCR-SLQ  927 (1092)
Q Consensus       863 ~~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s-------~s~Dg~i~iwd~~~~~~~~~~-~~~  927 (1092)
                      +.|+.+.+|+...       ++....+.+|...+..++|+||+++|++       ++.|++|+|||+.+++..... .+.
T Consensus       273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~  352 (426)
T d1hzua2         273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA  352 (426)
T ss_dssp             TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred             CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc
Confidence            4567777777654       4778899999999999999999999994       556889999999987643321 111


Q ss_pred             cCCCCcCCCCCceEEEEecCCCEEEEE------eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEE
Q 001362          928 TPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF  994 (1092)
Q Consensus       928 ~~~~~~~~~~~v~~l~~s~dg~~la~~------~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~  994 (1092)
                      ....+......+.+++|||||++++++      .++.|+|||..+++....+ .++.      .++|+|+|-+
T Consensus       353 ~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i-~~~~------~~tp~Gk~~~  418 (426)
T d1hzua2         353 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV-KDPR------LITPTGKFNV  418 (426)
T ss_dssp             HHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEE-CCTT------CCSEEEEEEH
T ss_pred             hhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEE-CCCC------ccCCCceEeE
Confidence            111122222468999999999987542      3678999999999987763 3332      3568887744

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=5.7e-26  Score=252.31  Aligned_cols=325  Identities=11%  Similarity=0.028  Sum_probs=229.5

Q ss_pred             CCCC-CCchhhhcccccCCccccCCCcceeeecccCCCCceEEeecCCCceEEEEEcCC-CcEEEEecCCCCeeEEeeee
Q 001362          299 DYSP-KSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV-GDTGLWDVNSGQKLFIRNFK  376 (1092)
Q Consensus       299 ~fsP-~~s~~~~~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d-~~v~iwd~~~~~~~~~~~~~  376 (1092)
                      -||| ++..+....  .+...+.++.......+ +|...|.+++|||||++|++++..+ ..|++||+.+++...     
T Consensus         9 ~fSP~dG~~~a~~~--~g~v~v~d~~~~~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-----   80 (360)
T d1k32a3           9 DFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-----   80 (360)
T ss_dssp             EEEECGGGCEEEEE--TTEEEEECTTSSBEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-----
T ss_pred             cccCCCCCEEEEEE--CCeEEEEECCCCcEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE-----
Confidence            4777 566654322  23334444444433444 6889999999999999655555444 379999999987664     


Q ss_pred             eeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcE
Q 001362          377 VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQI  456 (1092)
Q Consensus       377 ~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l  456 (1092)
                                     +.+|...|.+++|+|||++|++++.++.+++|++.+++...   .+..|...+.+++|+|||+  
T Consensus        81 ---------------~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~--  140 (360)
T d1k32a3          81 ---------------FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV---IERSREAMITDFTISDNSR--  140 (360)
T ss_dssp             ---------------CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCCEEECTTSC--
T ss_pred             ---------------eeCCCceEEeeeecccccccceeccccccccccccccceee---eeecccccccchhhcccee--
Confidence                           66799999999999999999999999999999999986554   5678889999999999999  


Q ss_pred             EEEEE----------eCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-----
Q 001362          457 SVITC----------GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-----  521 (1092)
Q Consensus       457 ~l~s~----------~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----  521 (1092)
                      +|+.+          ..++.+++||+.+++.... ..+...+..++|+  +||++|++++.++.+++|+......     
T Consensus       141 ~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~s--pdg~~l~~~s~~~~~~~~d~~~~~~~~~~~  217 (360)
T d1k32a3         141 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFD--ADSKNLYYLSYRSLDPSPDRVVLNFSFEVV  217 (360)
T ss_dssp             EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEEEC--TTSCEEEEEESCCCCCEECSSSSCEECCSC
T ss_pred             eeeeeccccccceeeccccceeeeccccCceeee-ccccccccccccc--CCCCEEEEEeCCCceEcccccccceeeccc
Confidence            55543          3455799999988876544 4567778888885  5788999999999999998755432     


Q ss_pred             --eEEecCCCCceEEEEEccCCCEEEEEecCCCC-ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC---CCEEEE
Q 001362          522 --RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILA  595 (1092)
Q Consensus       522 --~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~  595 (1092)
                        ......+...+..+.+++++..++.+.....+ ...+..++...+.. ..+..+.   +.+..+.+.+.   ..++++
T Consensus       218 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~  293 (360)
T d1k32a3         218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLE---SSILIYSVPVHGEFAAYYQG  293 (360)
T ss_dssp             BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECS---SEEEEEECCCCCSHHHHHHC
T ss_pred             cceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCce-eEeeecC---CCceEEEEEecCCCeeEEEe
Confidence              12223333344445667777666544322111 12244455555443 2333333   44454555444   345677


Q ss_pred             EeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeeccccc
Q 001362          596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS  664 (1092)
Q Consensus       596 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  664 (1092)
                      ++.++.+++||+.+++.....      ..+..++|+|||++|++++.||.|++|++..+.....+....
T Consensus       294 ~~~~~~i~~~d~~~~~~~~~~------~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~  356 (360)
T d1k32a3         294 APEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDK  356 (360)
T ss_dssp             CCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCS
T ss_pred             cCCCCEEEEEECCCCeEEEec------CCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEecc
Confidence            889999999999988754332      237899999999999999999999999999887766655433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=6.8e-21  Score=204.78  Aligned_cols=275  Identities=12%  Similarity=0.104  Sum_probs=217.8

Q ss_pred             eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE-EEeCCCEEEEEEcc
Q 001362          348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-VAYSKHIVQLYAYH  426 (1092)
Q Consensus       348 ~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la-s~~~d~~i~iwd~~  426 (1092)
                      |+.++++.|++|.|||+++++.+.+.+                    ....+..++|||||++|+ +++.++.|++||+.
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~--------------------~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~   62 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIP--------------------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE--------------------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEE--------------------CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            566788899999999999998776422                    235678999999999885 55678999999999


Q ss_pred             CCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEE-EEE
Q 001362          427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSI  505 (1092)
Q Consensus       427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~  505 (1092)
                      +++.+.   .+..|. .+..++|++++.. +++++..++.+.+|+..+++....+..+ ....++++++  ++..+ +++
T Consensus        63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--dg~~~~~~~  134 (301)
T d1l0qa2          63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN  134 (301)
T ss_dssp             TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred             CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeecccc-ccceEEEeec--CCCeeeeee
Confidence            987655   455555 4688999999986 5667778889999999999998888755 4566777754  55554 566


Q ss_pred             ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001362          506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH  585 (1092)
Q Consensus       506 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  585 (1092)
                      ..++.+.+|+..+......+.... .+..++++|+++.++++..+   ...+.+|+....+........    ..+..++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  206 (301)
T d1l0qa2         135 NGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFD---SMSISVIDTVTNSVIDTVKVE----AAPSGIA  206 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECS----SEEEEEE
T ss_pred             ccccceeeeeccccceeeecccCC-CceEEEeeccccceeeeccc---ccccccccccceeeeeccccc----CCcceee
Confidence            678899999999887777666543 56788999999999887642   456888888888777766654    3577899


Q ss_pred             EcCCCCEEEEEe---CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCceeeecc
Q 001362          586 FDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       586 ~~p~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                      +++++..++.++   .++.|++||..+++.+..+..+.   .+..++|+|||++| ++++.++.|.+||+.+++.+..+.
T Consensus       207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            999999887754   34689999999999998887643   36899999999987 566778999999999998777664

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=4.8e-20  Score=198.07  Aligned_cols=268  Identities=14%  Similarity=0.172  Sum_probs=204.1

Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE-EEeCCCeEEEEECCCCceeeecccccCceeeeee
Q 001362          594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRKLSV  672 (1092)
Q Consensus       594 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~  672 (1092)
                      ++++.|++|.+||+.+++.+.++....   .+..++|+|||++|+ +++.++.|++||+.+++.+..+.           
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g~---~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~-----------   71 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVGS---NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-----------   71 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----------
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECCC---CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee-----------
Confidence            456789999999999999999988653   357899999999875 55678999999988664332211           


Q ss_pred             cCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEe
Q 001362          673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL  752 (1092)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~  752 (1092)
                                                                                                      
T Consensus        72 --------------------------------------------------------------------------------   71 (301)
T d1l0qa2          72 --------------------------------------------------------------------------------   71 (301)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEc
Q 001362          753 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIV  830 (1092)
Q Consensus       753 ~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~  830 (1092)
                                                                      ....+..+++++++..++++.  ++.+.+|+.
T Consensus        72 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (301)
T d1l0qa2          72 ------------------------------------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDT  103 (301)
T ss_dssp             ------------------------------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ------------------------------------------------ccccccccccccccccccccccccceeeeccc
Confidence                                                            111234667777777666654  467899999


Q ss_pred             CCceeeEEecCCCCCeEEEEEcCCCCCEE-EEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC-C
Q 001362          831 MTFKTILTIMPPSPTATSLAFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-A  908 (1092)
Q Consensus       831 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D-g  908 (1092)
                      .+++....+.. .....+++|+| ++..+ +++..++.+.+|+..+++.+..+..+ ..+..++++|+++.+++++.+ +
T Consensus       104 ~~~~~~~~~~~-~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  180 (301)
T d1l0qa2         104 TSNTVAGTVKT-GKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSM  180 (301)
T ss_dssp             TTTEEEEEEEC-SSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTT
T ss_pred             ccceeeeeccc-cccceEEEeec-CCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeeccccc
Confidence            99988888774 45678999999 66655 56667889999999999988888754 458899999999988887765 5


Q ss_pred             cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-Ee---CCcEEEEEcCCceeeeeeccCCCCCEEEE
Q 001362          909 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH---ETHLAIYEAEELTCLKQWFPISSVPISQA  984 (1092)
Q Consensus       909 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~---d~~i~lwd~~~~~~~~~~~~~h~~~v~~l  984 (1092)
                      .+.+|+....+...  .....       ..+..++|++++..+++ +.   +++|++||+.+++.+..+.  +...+.++
T Consensus       181 ~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~v  249 (301)
T d1l0qa2         181 SISVIDTVTNSVID--TVKVE-------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP--VGPDPAGI  249 (301)
T ss_dssp             EEEEEETTTTEEEE--EEECS-------SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE--CCSSEEEE
T ss_pred             ccccccccceeeee--ccccc-------CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc--CCCCEEEE
Confidence            66777777654222  12111       13678999999998876 32   3579999999999887643  34578999


Q ss_pred             EEecCCCEE-EEEECCCcEEEEEcCCCceEEeec
Q 001362          985 TFSCDCRMV-FTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       985 ~fs~dg~~l-~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      +|||||++| ++++.|++|++||+.+++++.++.
T Consensus       250 a~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         250 AVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            999999987 567789999999999999998875

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=6.3e-21  Score=208.79  Aligned_cols=309  Identities=8%  Similarity=0.022  Sum_probs=205.3

Q ss_pred             CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe
Q 001362          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  488 (1092)
                      +|+++++.|++|+|||+++++.+..+ ....+...+.+++|+|||++ ++++++.++.|.+||+.+++.+..+..+....
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            58999999999999999998766532 23344556889999999994 34677889999999999999998887654332


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC--------CCceeEEEE
Q 001362          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--------EGESFLVEW  560 (1092)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~--------~~~~~i~iw  560 (1092)
                      ....                                       +..++|+||+++++++....        ..+..+.+|
T Consensus        80 ~~~~---------------------------------------~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  120 (337)
T d1pbyb_          80 RVKS---------------------------------------LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY  120 (337)
T ss_dssp             EEEC---------------------------------------TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred             cccc---------------------------------------eeeEEEcCCCcEEEEeecCCcceeeeccccccceeec
Confidence            1110                                       11244555555554443210        124568899


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001362          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI  640 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  640 (1092)
                      |..+++....+....    .+..++|+|+++++++++.  .+.+||..+++....+..+..   .....++|++..+...
T Consensus       121 d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  191 (337)
T d1pbyb_         121 DAETLSRRKAFEAPR----QITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSW---EAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             ETTTTEEEEEEECCS----SCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTT---TTTTBCCCBCCCCCCC
T ss_pred             cccCCeEEEeccccC----CceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCc---cccceecCCcceeecc
Confidence            999999988887643    5778999999999999864  477899999998888876533   2333444544332221


Q ss_pred             eC-CCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc
Q 001362          641 AN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  719 (1092)
Q Consensus       641 ~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~  719 (1092)
                      .. .+....+...                   .                      ..+.........++.+.+|+...  
T Consensus       192 ~~~~~~~~~~~~~-------------------~----------------------~~~~~~~~~~~~~~~~~~~~~~~--  228 (337)
T d1pbyb_         192 HESSGVMATPFYT-------------------A----------------------RKDIDPADPTAYRTGLLTMDLET--  228 (337)
T ss_dssp             CTTTTEEEEEEEE-------------------E----------------------BTTSCTTSGGGEEEEEEEEETTT--
T ss_pred             ccccceeeeeeee-------------------e----------------------eeccceeeecccCccEEEEEcCC--
Confidence            11 1111111100                   0                      01111122222222233333210  


Q ss_pred             CccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCC
Q 001362          720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS  799 (1092)
Q Consensus       720 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~  799 (1092)
                                     ..+....+.                                                        
T Consensus       229 ---------------~~~~~~~~~--------------------------------------------------------  237 (337)
T d1pbyb_         229 ---------------GEMAMREVR--------------------------------------------------------  237 (337)
T ss_dssp             ---------------CCEEEEEEE--------------------------------------------------------
T ss_pred             ---------------CcEEEEEec--------------------------------------------------------
Confidence                           001111111                                                        


Q ss_pred             CCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee
Q 001362          800 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  879 (1092)
Q Consensus       800 ~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~  879 (1092)
                      .+...+..+++++++.+++++ ++.+++||+.+++.+..+. +...+.+++|+| ||++|++++.|++|++||..+++.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         238 IMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEE
Confidence            145567788899999988755 5889999999999998886 566789999999 8999999999999999999999998


Q ss_pred             Eeecc
Q 001362          880 SKLEG  884 (1092)
Q Consensus       880 ~~l~~  884 (1092)
                      .++.-
T Consensus       315 ~~i~~  319 (337)
T d1pbyb_         315 GQVDL  319 (337)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=2.4e-21  Score=212.10  Aligned_cols=317  Identities=10%  Similarity=0.044  Sum_probs=219.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE-EEeCCCeEEEEECCCCceeeecccccCceee
Q 001362          591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRK  669 (1092)
Q Consensus       591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~  669 (1092)
                      +++++++.|++|++||+.+++.+..+..+.....+..++|+|||++++ +++.++.|.+||+.+++.+.....+....  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~--   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE--   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc--
Confidence            579999999999999999999999998765555678999999999875 55678999999999987776554322111  


Q ss_pred             eeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEE
Q 001362          670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI  749 (1092)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  749 (1092)
                                                                                     +...+..++|+|+++.+
T Consensus        80 ---------------------------------------------------------------~~~~~~~v~~s~dg~~l   96 (337)
T d1pbyb_          80 ---------------------------------------------------------------RVKSLFGAALSPDGKTL   96 (337)
T ss_dssp             ---------------------------------------------------------------EEECTTCEEECTTSSEE
T ss_pred             ---------------------------------------------------------------cccceeeEEEcCCCcEE
Confidence                                                                           11223346777888877


Q ss_pred             EEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEE
Q 001362          750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYI  829 (1092)
Q Consensus       750 ~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd  829 (1092)
                      +++..+.....|.....          ...+.+|+..++.......     ....+..++|+|||+++++++ +.+.+||
T Consensus        97 ~~~~~~~~~~~~~~~~~----------~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~-~~~~~~d  160 (337)
T d1pbyb_          97 AIYESPVRLELTHFEVQ----------PTRVALYDAETLSRRKAFE-----APRQITMLAWARDGSKLYGLG-RDLHVMD  160 (337)
T ss_dssp             EEEEEEEEECSSCEEEC----------CCEEEEEETTTTEEEEEEE-----CCSSCCCEEECTTSSCEEEES-SSEEEEE
T ss_pred             EEeecCCcceeeecccc----------ccceeeccccCCeEEEecc-----ccCCceEEEEcCCCCEEEEEc-CCcceee
Confidence            77766554444332211          1234456666666554443     345677899999999998875 4578899


Q ss_pred             cCCceeeEEecCCCCCeEEEEEcCCCCCEEEE-EeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC
Q 001362          830 VMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA  908 (1092)
Q Consensus       830 ~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg  908 (1092)
                      ..+++....+..+.. .....++| ++..+.. +...+...+++                   .....+.......+.++
T Consensus       161 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~  219 (337)
T d1pbyb_         161 PEAGTLVEDKPIQSW-EAETYAQP-DVLAVWNQHESSGVMATPF-------------------YTARKDIDPADPTAYRT  219 (337)
T ss_dssp             TTTTEEEEEECSTTT-TTTTBCCC-BCCCCCCCCTTTTEEEEEE-------------------EEEBTTSCTTSGGGEEE
T ss_pred             eecCcEEEEeecCCc-cccceecC-Ccceeeccccccceeeeee-------------------eeeeeccceeeecccCc
Confidence            999998888765432 22334455 3322221 11112222111                   12223333344445567


Q ss_pred             cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEec
Q 001362          909 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSC  988 (1092)
Q Consensus       909 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~  988 (1092)
                      .+.+|+...+...........       ..+..++++|++.++++. ++.+++||+.+++.+....  +...+.+++|||
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~  289 (337)
T d1pbyb_         220 GLLTMDLETGEMAMREVRIMD-------VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP--LPHSYYSVNVST  289 (337)
T ss_dssp             EEEEEETTTCCEEEEEEEECS-------SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE--CSSCCCEEEECT
T ss_pred             cEEEEEcCCCcEEEEEecCCC-------cceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc--CCCCEEEEEECC
Confidence            799999988764432222211       247788999999988764 5899999999999988754  456789999999


Q ss_pred             CCCEEEEEECCCcEEEEEcCCCceEEeeccc
Q 001362          989 DCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019 (1092)
Q Consensus       989 dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~ 1019 (1092)
                      ||++|++++.|++|+|||+.+++.+.++...
T Consensus       290 dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         290 DGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             TSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence            9999999999999999999999999888743

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=4.1e-21  Score=211.20  Aligned_cols=323  Identities=10%  Similarity=0.013  Sum_probs=214.8

Q ss_pred             EEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEc-ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001362          402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      ++|+++++||++++.+++|.+||+.+++.++   ++. .|...+.+++|+|||+. ++++++.++.|++||+.+++.+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEE---EEEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeee
Confidence            4789999999999999999999999987655   444 45567889999999995 457778899999999999998887


Q ss_pred             EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC--------C
Q 001362          481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--------E  552 (1092)
Q Consensus       481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~--------~  552 (1092)
                      +...........                                      .+..++|+|||++++++....        .
T Consensus        78 ~~~~~~~~~~~~--------------------------------------~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~  119 (346)
T d1jmxb_          78 ANLSSVPGEVGR--------------------------------------SMYSFAISPDGKEVYATVNPTQRLNDHYVV  119 (346)
T ss_dssp             EESCCSTTEEEE--------------------------------------CSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             ecccccccccCC--------------------------------------ceEEEEEecCCCEEEEEecCCcceeeeecc
Confidence            754322111000                                      112345566666555443210        1


Q ss_pred             CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001362          553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      .+..+.+|+..+++....+..+.. ...+..+.+++++..+++   ++.+.+|+..+++.+..+..+..   ...+.++|
T Consensus       120 ~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  192 (346)
T d1jmxb_         120 KPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNW---NRKGYSAP  192 (346)
T ss_dssp             CCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTC---CCTTBCCC
T ss_pred             CcceEEEEecccceeeeEEEeeec-cCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCC---ccceEEec
Confidence            245688899888776655544331 234556667777765544   25689999999999888876533   45566777


Q ss_pred             CCCEEEEEeC-CCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccc
Q 001362          633 NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1092)
Q Consensus       633 ~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1092)
                      ++..+..... ++.+.+++...                                                          
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------  214 (346)
T d1jmxb_         193 DVLYFWPHQSPRHEFSMLYTIA----------------------------------------------------------  214 (346)
T ss_dssp             BCCCCCCCCCTTCEEEEEEEEE----------------------------------------------------------
T ss_pred             cccEEEEEecCCCceEeeeeee----------------------------------------------------------
Confidence            7765543332 33333332110                                                          


Q ss_pred             eeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCce
Q 001362          712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF  791 (1092)
Q Consensus       712 lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~  791 (1092)
                                                   .+.+....+.+...++.+.+|++..                      +...
T Consensus       215 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~  243 (346)
T d1jmxb_         215 -----------------------------RFKDDKQDPATADLLYGYLSVDLKT----------------------GKTH  243 (346)
T ss_dssp             -----------------------------EC-------CCCEEEEEEEEEETTT----------------------CCEE
T ss_pred             -----------------------------eeccCceeEeeccCCceEEEEECCC----------------------CceE
Confidence                                         0011111122222233334443322                      1111


Q ss_pred             eeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 001362          792 MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY  871 (1092)
Q Consensus       792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw  871 (1092)
                      .....   .+...+..+.+++++.+++...++.+.+||..+++.+..+. +...+.+++|+| |+++|++++.||.|++|
T Consensus       244 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~  318 (346)
T d1jmxb_         244 TQEFA---DLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVF  318 (346)
T ss_dssp             EEEEE---ECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEE
T ss_pred             EEEee---cccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEE
Confidence            11100   25667788899999999998888999999999999988876 455789999999 89999999999999999


Q ss_pred             EcCCceeeEeeccccC
Q 001362          872 NARSSEVISKLEGHSK  887 (1092)
Q Consensus       872 d~~~~~~~~~l~~h~~  887 (1092)
                      |+.+++.+.++..+.+
T Consensus       319 D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         319 NPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             ETTTTEEEEEEECSSS
T ss_pred             ECccCCEEEEEECCCC
Confidence            9999999998885444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=1.5e-21  Score=214.79  Aligned_cols=327  Identities=9%  Similarity=-0.026  Sum_probs=215.9

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEE-EeCCCeEEEEECCCCceeeeccc
Q 001362          584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGV  662 (1092)
Q Consensus       584 ~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~  662 (1092)
                      ++|+++++++++++.+++|.+||+.+++.+.++..+.. ..+..++|+|||+++++ +..++.|.+||+.+++.+..+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            46889999999999999999999999999998876433 24679999999998755 45789999999998876654432


Q ss_pred             ccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEE
Q 001362          663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY  742 (1092)
Q Consensus       663 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  742 (1092)
                      .....                                                                .+...+..++|
T Consensus        81 ~~~~~----------------------------------------------------------------~~~~~~~~v~~   96 (346)
T d1jmxb_          81 SSVPG----------------------------------------------------------------EVGRSMYSFAI   96 (346)
T ss_dssp             CCSTT----------------------------------------------------------------EEEECSSCEEE
T ss_pred             ccccc----------------------------------------------------------------ccCCceEEEEE
Confidence            11110                                                                01112234667


Q ss_pred             ecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC
Q 001362          743 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG  822 (1092)
Q Consensus       743 s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd  822 (1092)
                      +|||++++++..+.....|.....          ...+.+|+..++.........  .....+..+.+++++++++.  +
T Consensus        97 s~DG~~l~v~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~  162 (346)
T d1jmxb_          97 SPDGKEVYATVNPTQRLNDHYVVK----------PPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGSLYVA--G  162 (346)
T ss_dssp             CTTSSEEEEEEEEEEECSSCEEEC----------CCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSCEEEE--S
T ss_pred             ecCCCEEEEEecCCcceeeeeccC----------cceEEEEecccceeeeEEEee--eccCceEEEEecCCCEEEEe--C
Confidence            777776666554322111111000          011222222222211111100  12334556677788876654  4


Q ss_pred             CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEE-EEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEE
Q 001362          823 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNIL  901 (1092)
Q Consensus       823 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l  901 (1092)
                      +.+.+|++.+++.+..+..+ .....++++| ++..+ +.+..++.+.+++..                 ..+.+....+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~  223 (346)
T d1jmxb_         163 PDIYKMDVKTGKYTVALPLR-NWNRKGYSAP-DVLYFWPHQSPRHEFSMLYTI-----------------ARFKDDKQDP  223 (346)
T ss_dssp             SSEEEECTTTCCEEEEECST-TCCCTTBCCC-BCCCCCCCCCTTCEEEEEEEE-----------------EEC-------
T ss_pred             CcceEEEccCCCEEEEEecC-CCccceEEec-cccEEEEEecCCCceEeeeee-----------------eeeccCceeE
Confidence            56899999999998888754 3456677888 55444 444444555554321                 1223445566


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCE
Q 001362          902 VSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPI  981 (1092)
Q Consensus       902 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v  981 (1092)
                      +++..++.+.+|++.++.........    +.   ..+..+.+++++.+++...++.|.+||..+++.+.....  ...+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~  294 (346)
T d1jmxb_         224 ATADLLYGYLSVDLKTGKTHTQEFAD----LT---ELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL--DHTY  294 (346)
T ss_dssp             CCCEEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEEC--SSCC
T ss_pred             eeccCCceEEEEECCCCceEEEEeec----cc---ceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcC--CCCE
Confidence            67777888999999987644322211    11   257889999999999887788999999999998887543  4568


Q ss_pred             EEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeec
Q 001362          982 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       982 ~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      .+++|||||++|++++.|+.|++||+.+++.+.++.
T Consensus       295 ~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         295 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence            899999999999999999999999999999998887

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=8.9e-18  Score=186.45  Aligned_cols=333  Identities=11%  Similarity=0.023  Sum_probs=222.7

Q ss_pred             cCCCCcEEEEEECCCCCEEEEEe-----CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEE------
Q 001362          393 RDPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC------  461 (1092)
Q Consensus       393 ~~h~~~V~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~------  461 (1092)
                      ..+..++..++++|||+.+++..     ..+.|.+||..+++.+.   ++..+..+  .++|+|||++  ++++      
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~~--l~va~~~~~~   89 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGSE--FALASTSFSR   89 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCCc--cEEEcCCCCE--EEEEeecCCc
Confidence            35788999999999999998752     34579999999997665   45455433  7999999995  5444      


Q ss_pred             ----eCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEE
Q 001362          462 ----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAY  537 (1092)
Q Consensus       462 ----~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~  537 (1092)
                          ..++.|.+||..+++.+..+..+......+...+                                     ..+.|
T Consensus        90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~  132 (373)
T d2madh_          90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-------------------------------------WMNAN  132 (373)
T ss_pred             ccccccceEEEEEECCCCcEEEEEecCCcceeEeccCC-------------------------------------CcEEE
Confidence                3467899999999999888876655544432211                                     13578


Q ss_pred             ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEE
Q 001362          538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTI  616 (1092)
Q Consensus       538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~s~dg~i~iwd~~~~~~~~~~  616 (1092)
                      +++++.++....+  ....+.+|+..+++.....       ....++.++|+++.+ ++.+.|+.+.+|+...+......
T Consensus       133 s~dg~~~~v~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~  203 (373)
T d2madh_         133 TPNNADLLFFQFA--AGPAVGLVVQGGSSDDQLL-------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGL  203 (373)
T ss_pred             EeCCCcEEEEEEc--CCCceEEeeccCCeEEEEe-------ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEE
Confidence            8888887766543  2456888988877654433       345678899998766 56889999999999988877665


Q ss_pred             eCCC----CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecC
Q 001362          617 DAGG----GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  692 (1092)
Q Consensus       617 ~~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1092)
                      ....    .........+++++. ++..+.++.+.+|+...........                               
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~-------------------------------  251 (373)
T d2madh_         204 VGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAP-------------------------------  251 (373)
T ss_pred             eeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEe-------------------------------
Confidence            4321    111223455556554 4455677889999877653221110                               


Q ss_pred             CCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCc
Q 001362          693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST  772 (1092)
Q Consensus       693 ~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~  772 (1092)
                                          |+.                 +........+.|.+...++.+.++...             
T Consensus       252 --------------------~~~-----------------~~~~~~~~~~~~~~~~~~~~~~d~~~~-------------  281 (373)
T d2madh_         252 --------------------IDA-----------------LSGGRKADTWRPGGWQQVAYLKSSDGI-------------  281 (373)
T ss_pred             --------------------ecc-----------------ccCcEEeeeeccCcceeeEEecCCCeE-------------
Confidence                                000                 011111222233322222222222111             


Q ss_pred             ccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEE
Q 001362          773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAF  851 (1092)
Q Consensus       773 ~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~  851 (1092)
                                                         ..+.+++..++... ++.+.+||..+++.+..+. +...+.+++|
T Consensus       282 -----------------------------------~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~  325 (373)
T d2madh_         282 -----------------------------------YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISV  325 (373)
T ss_pred             -----------------------------------EEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEE
Confidence                                               11223333444443 6889999999999998876 5677899999


Q ss_pred             cCCCCC--EEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCC
Q 001362          852 NPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA  897 (1092)
Q Consensus       852 s~~d~~--~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spd  897 (1092)
                      +| ||+  ++++++.|+.|++||+.+++.+.++.+|....+.|++.++
T Consensus       326 sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         326 AQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            99 777  4578899999999999999999999988888888887654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.82  E-value=1.2e-17  Score=185.31  Aligned_cols=306  Identities=12%  Similarity=0.022  Sum_probs=213.2

Q ss_pred             ccCCCCceEEeecCCCceEEEEE----cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001362          331 IEGSSSPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg----~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      ..+..++..++++|||++++++.    +..+.|.+||..+++.+..                   +..+..  ..++|||
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~Sp   75 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAH   75 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCCC--ccEEEcC
Confidence            46777999999999999765542    2346799999999998865                   333433  3699999


Q ss_pred             CCCEEEEEe----------CCCEEEEEEccCCCcccceEEEcccccc-------eeEEEEecCCCcEEEEEEeCCCcEEE
Q 001362          407 DGSLLGVAY----------SKHIVQLYAYHGGSDARQQLEIDAHVGN-------VNDLAFSAPCKQISVITCGDDKTIKV  469 (1092)
Q Consensus       407 dg~~las~~----------~d~~i~iwd~~~~~~~~~~~~~~~h~~~-------v~~~~~s~d~~~l~l~s~~~d~~i~v  469 (1092)
                      ||++|++++          .++.|.+||..+++.+.   .+..+...       ...+.|++|++.+++.....++.+.+
T Consensus        76 DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~  152 (373)
T d2madh_          76 SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGL  152 (373)
T ss_pred             CCCEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEE
Confidence            999999875          35789999999987655   33333332       24589999999765666667788999


Q ss_pred             EECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCceEEEEEccCCCE
Q 001362          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANGRR  543 (1092)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~dg~~  543 (1092)
                      |+..+++......    ...++.+++.+. ..+++.+.||.+.+|+.............      ........+++++.+
T Consensus       153 ~~~~~~~~~~~~~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (373)
T d2madh_         153 VVQGGSSDDQLLS----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI  227 (373)
T ss_pred             eeccCCeEEEEec----cceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE
Confidence            9988877665443    345666655432 46678999999999999887765543221      122344556666666


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEEe--ecc-------ccCCceEEEEEcCCCCEEE----------EEeCCCcEEE
Q 001362          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQ--GLQ-------LQHNSVSVVHFDTAKDQIL----------AAGDDHVIKI  604 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~-------~~~~~v~~~~~~p~~~~l~----------~~s~dg~i~i  604 (1092)
                      ++...     ++.+.+|+..++.......  ...       ........+++++++..++          ....++.+.+
T Consensus       228 ~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~  302 (373)
T d2madh_         228 VWPVY-----SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             EEecC-----CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence            55432     4458888877665432221  111       0012233455666655444          4456778999


Q ss_pred             EECCCCceEEEEeCCCCCCCCceEEEccCCCE--EEEEeCCCeEEEEECCCCceeeecccccCceeeeeec
Q 001362          605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN  673 (1092)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~  673 (1092)
                      ||..+++.+..+....   .+..++|+|||+.  +++++.|+.|++||..+++.+..+..+......+++.
T Consensus       303 ~d~~t~~~~~~~~~~~---~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~  370 (373)
T d2madh_         303 VTGLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM  370 (373)
T ss_pred             EECCCCcEEEEecCCC---CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEe
Confidence            9999999998886543   4789999999984  4678889999999999999999998776666655554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=1.3e-17  Score=183.65  Aligned_cols=298  Identities=14%  Similarity=0.097  Sum_probs=200.0

Q ss_pred             CceEEeecCCCceEEEEE----cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001362          336 SPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg----~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      ++.-.+.+|||++++++.    ..+++|.+||..+++.+.+                   +..+.  +..++|||||++|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g~--~~~~a~SpDg~~l   61 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGF--LPNPVVADDGSFI   61 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECS--SCEEEECTTSSCE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECCC--CCceEEcCCCCEE
Confidence            455567799999765553    2356799999999988764                   22233  3369999999999


Q ss_pred             EEEe----------CCCEEEEEEccCCCcccceEEEcccc----cceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001362          412 GVAY----------SKHIVQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  477 (1092)
Q Consensus       412 as~~----------~d~~i~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~  477 (1092)
                      ++.+          .++.|.+||..+++.+........+.    .....++|++|+++++++..+.+..+.+||..+++.
T Consensus        62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~  141 (355)
T d2bbkh_          62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF  141 (355)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence            8753          47889999999987665332211121    234568999999965555556778999999999999


Q ss_pred             eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec------CCCCceEEEEEccCCCEEEEEecCC
Q 001362          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------APGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      +..+..+.......    . .....+..+.||...++............      .+...+....+++++..++.++.  
T Consensus       142 ~~~~~~~~~~~~~~----~-~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  214 (355)
T d2bbkh_         142 KRMLDVPDCYHIFP----T-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--  214 (355)
T ss_dssp             EEEEECCSEEEEEE----E-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred             eeEEecCCcceEee----c-CCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC--
Confidence            88887554322111    1 11234555566665555544433322211      12223455677888888887764  


Q ss_pred             CCceeEEEEeCCCCeEEE--EEeecc-------ccCCceEEEEEcCCCCEEEEEeCC----------CcEEEEECCCCce
Q 001362          552 EGESFLVEWNESEGAIKR--TYQGLQ-------LQHNSVSVVHFDTAKDQILAAGDD----------HVIKIWDMNKVQL  612 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~--~~~~~~-------~~~~~v~~~~~~p~~~~l~~~s~d----------g~i~iwd~~~~~~  612 (1092)
                        ++.+++|+...++...  ....+.       ........+++++++..++....+          ..|.+||..+++.
T Consensus       215 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~  292 (355)
T d2bbkh_         215 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER  292 (355)
T ss_dssp             --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred             --CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence              5679999998775432  222111       001223457899999988876533          4699999999999


Q ss_pred             EEEEeCCCCCCCCceEEEccCCC--EEEEEeCCCeEEEEECCCCceeeecccccCc
Q 001362          613 LTTIDAGGGLPENPRICFNKNGT--LLAVIANENRIKILETPESNSVDAAGVLSDN  666 (1092)
Q Consensus       613 ~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  666 (1092)
                      +..+....   .+.+++|+|||+  ++++++.|+.|++||..+++.+..+..+...
T Consensus       293 ~~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~  345 (355)
T d2bbkh_         293 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG  345 (355)
T ss_dssp             EEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred             EEEecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCC
Confidence            88886543   368999999998  4556677999999999999998888755443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=1e-17  Score=184.44  Aligned_cols=330  Identities=12%  Similarity=0.044  Sum_probs=200.7

Q ss_pred             EEEEEECCCCCEEEEEe-----CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEE--------EeCCC
Q 001362          399 VNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT--------CGDDK  465 (1092)
Q Consensus       399 V~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s--------~~~d~  465 (1092)
                      +...+.+|||+.+++..     .+..|.+||..+++.+.   ++..+  .+..++|||||+++++++        ++.|+
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~---~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~   78 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTD   78 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---EEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE---EEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCC
Confidence            33446789999998763     45679999999997665   34333  344799999999644432        34578


Q ss_pred             cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001362          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      .|++||..+++.+..+..+......+..                                     ....++|+++|++++
T Consensus        79 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~s~dg~~~~  121 (355)
T d2bbkh_          79 YVEVFDPVTLLPTADIELPDAPRFLVGT-------------------------------------YPWMTSLTPDGKTLL  121 (355)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSC-------------------------------------CGGGEEECTTSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCcceeecCC-------------------------------------CCceEEEecCCCeeE
Confidence            8999999999988877655433322110                                     112367899999888


Q ss_pred             EEecCCCCceeEEEEeCCCCeEEEEEeecccc----CCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCC
Q 001362          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~  620 (1092)
                      .+...  ....+.+|+..+++.+..+......    ......+.+++++..++... .++.+.+++......       .
T Consensus       122 v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-------~  192 (355)
T d2bbkh_         122 FYQFS--PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------E  192 (355)
T ss_dssp             EEECS--SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-------T
T ss_pred             EecCC--CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-------e
Confidence            77542  3567899999999888877654300    01122334444444443322 223333333322211       1


Q ss_pred             CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc--cccCceeeeeecCCCccccccccCCceeecCCCCCCC
Q 001362          621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG--VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV  698 (1092)
Q Consensus       621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~  698 (1092)
                      ....+....+++++..++.++.++.+++|+...+.......  .+........+                          
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------  246 (355)
T d2bbkh_         193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW--------------------------  246 (355)
T ss_dssp             TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE--------------------------
T ss_pred             ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeee--------------------------
Confidence            22235567888888999999999999999988653221100  00000000000                          


Q ss_pred             ccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCccccccc
Q 001362          699 KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKV  778 (1092)
Q Consensus       699 ~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~  778 (1092)
                                                        .......+++++++..++....++...                   
T Consensus       247 ----------------------------------~p~~~~~~~~~~d~~~~~~~~~~~~~~-------------------  273 (355)
T d2bbkh_         247 ----------------------------------RPGGWQQVAYHRALDRIYLLVDQRDEW-------------------  273 (355)
T ss_dssp             ----------------------------------EECSSSCEEEETTTTEEEEEEEECCTT-------------------
T ss_pred             ----------------------------------eccceEEEEEeCCCCeEEEEeccCCce-------------------
Confidence                                              000111234444444433332221000                   


Q ss_pred             CCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC-
Q 001362          779 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-  857 (1092)
Q Consensus       779 ~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-  857 (1092)
                                                            ......+.|.+||..+++.+..+. +...+.+++|+| |++ 
T Consensus       274 --------------------------------------~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~  313 (355)
T d2bbkh_         274 --------------------------------------RHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQ-DEKP  313 (355)
T ss_dssp             --------------------------------------CTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECC-SSSC
T ss_pred             --------------------------------------eecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcC-CCCe
Confidence                                                  000012468999999999888776 345688999999 776 


Q ss_pred             -EEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCC
Q 001362          858 -VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL  898 (1092)
Q Consensus       858 -~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg  898 (1092)
                       +++++..|+.|++||+.+++.+.++.++......+.+.++|
T Consensus       314 ~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         314 LLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             EEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence             45677889999999999999999998776666666665543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=5.7e-16  Score=168.46  Aligned_cols=284  Identities=14%  Similarity=0.149  Sum_probs=188.3

Q ss_pred             eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-CCCEEEEEEcc
Q 001362          348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYH  426 (1092)
Q Consensus       348 ~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~  426 (1092)
                      .++++++.|++|+||++++...+....                 ...|.+.|..++|||||++|++++ .|+.|++|++.
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~-----------------~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~   67 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQ-----------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA   67 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEE-----------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEE-----------------EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEe
Confidence            356888899999999998655443211                 224778999999999999996665 58999999998


Q ss_pred             CCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-CCCcEEEEECCCCceeEE--EecCCcCeEEEeecccCCccEEE
Q 001362          427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIF  503 (1092)
Q Consensus       427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~  503 (1092)
                      .+...........+...+..++|+|||+  +|++++ .++.|.+|+.........  ...+...+.++.+++  ++++++
T Consensus        68 ~~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--d~~~~~  143 (333)
T d1ri6a_          68 PDDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP--DNRTLW  143 (333)
T ss_dssp             TTTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT--TSSEEE
T ss_pred             CCCCcEEEeeecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceecccccCCCccceEEEeee--cceeee
Confidence            7654432222223445678899999999  455555 577899999877655433  345666777788854  666766


Q ss_pred             EEe-cCCeEEEEEcCCCCceEE------ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeE--EEEEe
Q 001362          504 SIS-VDGKIKAWLYDSLGARVD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--KRTYQ  572 (1092)
Q Consensus       504 s~~-~dg~i~vwd~~~~~~~~~------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~--~~~~~  572 (1092)
                      .++ .+..|.+|+.........      ..........++|++++..++.....   .....+|+..  ....  .....
T Consensus       144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~  220 (333)
T d1ri6a_         144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL---NSSVDVWELKDPHGNIECVQTLD  220 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT---TTEEEEEESSCTTSCCEEEEEEE
T ss_pred             ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccc---cCceEEEeecccccceeeeeeee
Confidence            666 456799999877654332      22234456789999999998876542   2335555543  2222  11221


Q ss_pred             e---ccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEe-CCCCCCCCceEEEccCCCEEEEEeC-CCeE
Q 001362          573 G---LQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTID-AGGGLPENPRICFNKNGTLLAVIAN-ENRI  646 (1092)
Q Consensus       573 ~---~~~~~~~v~~~~~~p~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i  646 (1092)
                      .   ..........+++++++++++.. ..++.+.+|++.......... .......+..++|+|||++|++++. ++.|
T Consensus       221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v  300 (333)
T d1ri6a_         221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHI  300 (333)
T ss_dssp             CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEE
T ss_pred             eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeE
Confidence            1   11122456778899999987765 467889999887543322221 1111234678999999999887754 6899


Q ss_pred             EEEEC--CCCc
Q 001362          647 KILET--PESN  655 (1092)
Q Consensus       647 ~iw~~--~~~~  655 (1092)
                      .+|++  .++.
T Consensus       301 ~v~~id~~tG~  311 (333)
T d1ri6a_         301 SVYEIVGEQGL  311 (333)
T ss_dssp             EEEEEETTTTE
T ss_pred             EEEEEECCCCc
Confidence            99955  4443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=4.8e-16  Score=169.05  Aligned_cols=151  Identities=13%  Similarity=0.124  Sum_probs=111.6

Q ss_pred             EEEEEecCCeEEEEEcCCCCceE--EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC
Q 001362          501 FIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH  578 (1092)
Q Consensus       501 ~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~  578 (1092)
                      .+++++.|++|++|+++......  ....+...+..++|+|||++|++++.   .++.|++|++........+..+....
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~---~d~~i~~~~i~~~~~~~~~~~~~~~~   82 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALP   82 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEeeecccC
Confidence            45788899999999998765433  22356678899999999999977663   25679999987665444444433233


Q ss_pred             CceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC-CCeEEEEECCCC
Q 001362          579 NSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETPES  654 (1092)
Q Consensus       579 ~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~  654 (1092)
                      ..+..++|+|||+++++++ .++.+.+|+..............+...+.++.++|+++++++++. +..+.+|+....
T Consensus        83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_          83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence            5677899999999999987 477899999887766655544344456788999999998888775 456788876543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.62  E-value=1.6e-14  Score=159.27  Aligned_cols=291  Identities=11%  Similarity=0.012  Sum_probs=194.5

Q ss_pred             CCCCceEEeecCCCceEEE--EEcCCCc--EEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001362          333 GSSSPMSMDFHPVQHTLLL--VGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       333 h~~~V~~v~~spdg~~lla--sg~~d~~--v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      +.+....++.+++++...+  ....+++  |.+||..+++.+..                   ..++...  .++|+|||
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spDg   76 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSG   76 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCCC
Confidence            4456677788899885333  3444554  66779999988764                   3334444  58999999


Q ss_pred             CEEEEEe----------CCCEEEEEEccCCCcccceEEEcccc-------cceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001362          409 SLLGVAY----------SKHIVQLYAYHGGSDARQQLEIDAHV-------GNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       409 ~~las~~----------~d~~i~iwd~~~~~~~~~~~~~~~h~-------~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      ++|++.+          .|+.|.+||..+++.+..   +..+.       .....++|+|||++ ++++...++.+.+||
T Consensus        77 ~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d  152 (368)
T d1mdah_          77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLS  152 (368)
T ss_dssp             SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEE
T ss_pred             CEEEEEcccCccccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEE
Confidence            9999864          367899999999876553   32221       12346899999996 334445689999999


Q ss_pred             CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe------cCCCCceEEEEEccCCCEEE
Q 001362          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY------DAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      +.+++.+..+..+.....    .+. ....++..+.||.+.+|++.........      ..+...+....+.+++..+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~----~~~-~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  227 (368)
T d1mdah_         153 VPGASDDQLTKSASCFHI----HPG-AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW  227 (368)
T ss_dssp             ETTTEEEEEEECSSCCCC----EEE-ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE
T ss_pred             CCCCcEeEEeeccCcceE----ccC-CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE
Confidence            999999988876654422    112 2246777888999999988766554322      12223445677788887766


Q ss_pred             EEecCCCCceeEEEEeCCCCeEEEEE--eecc-------ccCCceEEEEEcCCCCEEEEEeCC---------CcEEEEEC
Q 001362          546 SCGTSKEGESFLVEWNESEGAIKRTY--QGLQ-------LQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDM  607 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~--~~~~-------~~~~~v~~~~~~p~~~~l~~~s~d---------g~i~iwd~  607 (1092)
                      ..+      +.+++++...+......  ....       ........+++++++..++....+         ..|.+||.
T Consensus       228 ~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~  301 (368)
T d1mdah_         228 AVA------SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA  301 (368)
T ss_dssp             CBS------SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred             ecC------CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEEC
Confidence            542      22555665544433221  1110       001123347789998887765322         35899999


Q ss_pred             CCCceEEEEeCCCCCCCCceEEEccCCCE--EEEEeCCCeEEEEECCCCceeeeccc
Q 001362          608 NKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGV  662 (1092)
Q Consensus       608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~  662 (1092)
                      .+++.+..+....   .+..++|+|||+.  ++++..++.|++||..+++.+..+..
T Consensus       302 ~t~~~~~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         302 SVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             SSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             CCCcEeEEecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            9999888776442   3678999999973  45666789999999999988887764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.59  E-value=2.7e-13  Score=154.77  Aligned_cols=220  Identities=13%  Similarity=0.089  Sum_probs=138.8

Q ss_pred             EEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC--
Q 001362          339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS--  416 (1092)
Q Consensus       339 ~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~--  416 (1092)
                      .+.|.+|+. ++..  .|+.+.+||+.+++....              +....+..|...|.++.|||||++||+++.  
T Consensus        21 ~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~   83 (470)
T d2bgra1          21 SLRWISDHE-YLYK--QENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV   83 (470)
T ss_dssp             CCEECSSSE-EEEE--SSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred             CCEeCCCCE-EEEE--cCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence            478999997 4554  578999999999986542              112225667789999999999999998853  


Q ss_pred             -------CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC----
Q 001362          417 -------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG----  485 (1092)
Q Consensus       417 -------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----  485 (1092)
                             ++.+.|||+++++..    .+..|...+..+.|||||+  .++.. .++.+.+|+..+++..+....+.    
T Consensus        84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~  156 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII  156 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred             ceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCcc
Confidence                   467899999998643    3668889999999999999  45554 47789999999887765433221    


Q ss_pred             --------------cCeEEEeecccCCccEEEEEecCCe-EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001362          486 --------------APVYSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       486 --------------~~v~~~~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                                    +....+.|  ++||+.|+....|.+ +..|.+......   .........+.+...+..       
T Consensus       157 ~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~-------  224 (470)
T d2bgra1         157 YNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV-------  224 (470)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC-------
T ss_pred             cccccceeeeeeecCCccccEE--CCCCCccceeEecCCcCceEEEEeeccC---CCCCCeeeeecccccccc-------
Confidence                          22334456  568889988876644 544433211100   000111222222222211       


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeecc--------ccCCceEEEEEcCCCCEEEE
Q 001362          551 KEGESFLVEWNESEGAIKRTYQGLQ--------LQHNSVSVVHFDTAKDQILA  595 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~--------~~~~~v~~~~~~p~~~~l~~  595 (1092)
                       .....+.+|++.++........+.        .....+..+.|.+++..++.
T Consensus       225 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  276 (470)
T d2bgra1         225 -NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ  276 (470)
T ss_dssp             -CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred             -CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEE
Confidence             124457888887765443322211        11234567888888765554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=1.4e-13  Score=151.37  Aligned_cols=314  Identities=13%  Similarity=-0.014  Sum_probs=192.8

Q ss_pred             eEEEEEccCCCEEEE-EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----------CCC
Q 001362          532 CTRMAYSANGRRLFS-CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDH  600 (1092)
Q Consensus       532 i~~~~~s~dg~~l~~-~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s----------~dg  600 (1092)
                      ...++..++++.... ......+...+++||..+++.+..+.++.   ..  .++|+|||+.+++.+          .|+
T Consensus        22 ~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~---~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~   96 (368)
T d1mdah_          22 SCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF---LS--LAVAGHSGSDFALASTSFARSAKGKRTD   96 (368)
T ss_dssp             CBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT---TC--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred             ccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC---CC--cceECCCCCEEEEEcccCccccccccCC
Confidence            334456778876533 23344556779999999999999888765   33  578999999998754          367


Q ss_pred             cEEEEECCCCceEEEEeCCCCC-----CCCceEEEccCCCEEEEEe-CCCeEEEEECCCCceeeecccccCceeeeeecC
Q 001362          601 VIKIWDMNKVQLLTTIDAGGGL-----PENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNP  674 (1092)
Q Consensus       601 ~i~iwd~~~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~  674 (1092)
                      .|++||..+++.+..+..+...     .....++|+|||++++++. .++.+.+||+.+++....+..+.....    .|
T Consensus        97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~  172 (368)
T d1mdah_          97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI----HP  172 (368)
T ss_dssp             EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC----EE
T ss_pred             eEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE----cc
Confidence            8999999999999888654321     2245799999999998876 579999999999887776654332211    10


Q ss_pred             CCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeec
Q 001362          675 ISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS  754 (1092)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~  754 (1092)
                      .+       ....+.+    ++||+.++....++....|...          ......+...+....+.+++..+..  .
T Consensus       173 ~~-------~~~~v~~----~~Dg~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~--~  229 (368)
T d1mdah_         173 GA-------AATHYLG----SCPASLAASDLAAAPAAAGIVG----------AQCTGAQNCSSQAAQANYPGMLVWA--V  229 (368)
T ss_dssp             EE-------TTEEECC----CCTTSCEEEECCSSCCCCEECC----------CCSCTTSCBCSCCEEETTTTEEEEC--B
T ss_pred             CC-------CceEEEE----cCCCCEEEEEecCCceeeeeee----------cccccccccceeecccccCcEEEEe--c
Confidence            00       0001111    3444444444333333332211          1111123333445566777654433  3


Q ss_pred             CCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--C--------Ce
Q 001362          755 NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--G--------GV  824 (1092)
Q Consensus       755 dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--d--------g~  824 (1092)
                      ++.+.++++....            +.+++...+.........  -.......+++++++..+++..  +        ..
T Consensus       230 ~~~v~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~  295 (368)
T d1mdah_         230 ASSILQGDIPAAG------------ATMKAAIDGNESGRKADN--FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN  295 (368)
T ss_dssp             SSCCEEEECCSSC------------CEEECCCCSSCTHHHHTT--EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE
T ss_pred             CCCEEEEeecCCc------------eEEEeecccccceeeeee--ecCCCceeEEEcCCCCEEEEEecCCCceeecCCce
Confidence            4556665554332            122222221110000000  0112234588999998877653  1        24


Q ss_pred             EEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC--EEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEE
Q 001362          825 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF  894 (1092)
Q Consensus       825 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~  894 (1092)
                      |.+||..+++.+.++. +...+.+++|+| |++  +++++..|+.|++||..+++.+..+..... -..|++
T Consensus       296 v~v~D~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         296 TSSVTASVGQTSGPIS-NGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             EEEEESSSCCEEECCE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred             EEEEECCCCcEeEEec-CCCceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence            8999999999888776 345788999999 765  356777899999999999999999885433 344443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.56  E-value=7.1e-14  Score=159.67  Aligned_cols=377  Identities=11%  Similarity=0.022  Sum_probs=214.3

Q ss_pred             EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc--ccCCceEEEEEcCCCCEEEEEeC---------CCcE
Q 001362          534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGD---------DHVI  602 (1092)
Q Consensus       534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~s~---------dg~i  602 (1092)
                      .+.|.+|++++...      ++.+.+||..+++....+..+.  .+...|.++.|+||+++|+.++.         ++.+
T Consensus        21 ~~~W~~d~~~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~   94 (470)
T d2bgra1          21 SLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (470)
T ss_dssp             CCEECSSSEEEEES------SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             CCEeCCCCEEEEEc------CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceE
Confidence            46788999877642      3459999999999877666543  22357899999999999998753         5678


Q ss_pred             EEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccccc
Q 001362          603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG  682 (1092)
Q Consensus       603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  682 (1092)
                      .+||+.+++... +..+  ...+..+.|||||+.+|... ++.+++|+..++............+               
T Consensus        95 ~l~d~~~~~~~~-l~~~--~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~---------------  155 (470)
T d2bgra1          95 DIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI---------------  155 (470)
T ss_dssp             EEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT---------------
T ss_pred             EEEECCCCcccc-cccC--CccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCc---------------
Confidence            999999987543 3332  34578999999999999865 5789999998886555433211111               


Q ss_pred             ccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCC-eeEEE
Q 001362          683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-VHLMW  761 (1092)
Q Consensus       683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg-~i~lw  761 (1092)
                                        ...+..|     |...              ....+....+.|||||+.++....|. .+..|
T Consensus       156 ------------------~~~g~~d-----~~~~--------------~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         156 ------------------IYNGITD-----WVYE--------------EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             ------------------EEESBCC-----HHHH--------------HHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             ------------------ccccccc-----eeee--------------eeecCCccccEECCCCCccceeEecCCcCceE
Confidence                              0011100     0000              00122334578999999999887663 35555


Q ss_pred             eecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEe--
Q 001362          762 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--  839 (1092)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~--  839 (1092)
                      .+.....                 ..            ........+.+...+...   .+..+.+|++.++......  
T Consensus       199 ~~~~~~~-----------------~~------------~~~~~~~~~~~~~~g~~~---~~~~~~v~~~~~~~~~~~~~~  246 (470)
T d2bgra1         199 EYSFYSD-----------------ES------------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTNATS  246 (470)
T ss_dssp             EEEECCS-----------------TT------------CSSCEEEEEECCBTTSCC---CEEEEEEEEGGGCCSSSCCCE
T ss_pred             EEEeecc-----------------CC------------CCCCeeeeeccccccccC---CcceEEEEECCCcceeeeccc
Confidence            5432110                 00            011111112221111100   1235778888766543221  


Q ss_pred             ---------cCCCCCeEEEEEcCCCCCEEEEEe-CCC---c--EEEEEcCCceeeEeec-------------cccCCeEE
Q 001362          840 ---------MPPSPTATSLAFNPHDNNVIAIGM-DDS---T--ILIYNARSSEVISKLE-------------GHSKRVTG  891 (1092)
Q Consensus       840 ---------~~~~~~i~~l~~s~~d~~~lasg~-~dg---~--v~iwd~~~~~~~~~l~-------------~h~~~V~~  891 (1092)
                               ......+..+.|.+ ++.+++... ..+   .  +..+|..++.......             .|....  
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~--  323 (470)
T d2bgra1         247 IQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE--  323 (470)
T ss_dssp             EEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC--
T ss_pred             cccCCccccCCCCceEEEEEEcC-CCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCC--
Confidence                     11223467788888 666555432 222   2  3344555555433221             122222  


Q ss_pred             EEEcCCC--CEEEEEeCCCcEEEE--EcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-E-e-C---CcEEE
Q 001362          892 LVFSDAL--NILVSSGGDAQIFVW--DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-H-E---THLAI  961 (1092)
Q Consensus       892 l~~spdg--~~l~s~s~Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~-d---~~i~l  961 (1092)
                      ..|++++  .+++.+..||...||  +..++.     ......+..    .|..+ ++++++.+.. + . +   ..-.|
T Consensus       324 ~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~-----~~~lt~g~~----~v~~~-~~~d~~~iyf~a~~~~~~p~~~~l  393 (470)
T d2bgra1         324 PHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-----CTFITKGTW----EVIGI-EALTSDYLYYISNEYKGMPGGRNL  393 (470)
T ss_dssp             CEECTTSSEEEEEEECTTSCEEEEEEETTCSC-----CEESCCSSS----CEEEE-EEECSSEEEEEESCGGGCTTCBEE
T ss_pred             ceeeecCCCcEEEEeccCcCceeEEEeccCCc-----eeeeccCCe----eEEEE-EEECCCEEEEEEecCCCCcceEEE
Confidence            3344443  445667778766555  444433     222223333    35555 5556665533 3 2 2   12234


Q ss_pred             E--EcCCceeeee---eccCCCCCEEEEEEecCCCEEEE-EE--CCCcEEEEEcCCCceEEeec
Q 001362          962 Y--EAEELTCLKQ---WFPISSVPISQATFSCDCRMVFT-SF--VDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       962 w--d~~~~~~~~~---~~~~h~~~v~~l~fs~dg~~l~t-~~--~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      |  ++..+.....   ...+|...+.+++|||||++++. ++  ..-.+.+|+..+|+.+..+.
T Consensus       394 y~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le  457 (470)
T d2bgra1         394 YKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE  457 (470)
T ss_dssp             EEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence            4  4443332222   23468889999999999999773 33  33458999999999987775

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.55  E-value=3.8e-15  Score=161.17  Aligned_cols=329  Identities=9%  Similarity=-0.004  Sum_probs=198.9

Q ss_pred             cEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE
Q 001362          455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR  534 (1092)
Q Consensus       455 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~  534 (1092)
                      ++.++|++.+|.|+|||+.+++.++++..         |++.+.  . ..|..+.+.+++.  ..........|......
T Consensus        11 ~y~f~Sgg~sG~V~V~dlpS~r~l~~IpV---------fspd~~--~-g~g~~~es~~vl~--~~~~~~~gd~hhP~~s~   76 (441)
T d1qnia2          11 YYGFWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSA--T-GWGITNESKEILG--GDQQYLNGDCHHPHISM   76 (441)
T ss_dssp             EEEEEECBTTCCEEEEEETTTEEEEEECS---------SSBCTT--T-CTTTSHHHHHHHC--SSSCCSCCCBCCCEEEE
T ss_pred             EEEEEeCCCCCcEEEEeCCCCcEEEEEEe---------EcCCCC--E-EEEECCccceEEe--cccccccCcccCCCcce
Confidence            34688999999999999999999988842         333221  1 1111111111110  00111111223333444


Q ss_pred             EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCE--EEEEeCCC------------
Q 001362          535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ--ILAAGDDH------------  600 (1092)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--l~~~s~dg------------  600 (1092)
                      ...+|||++|++...   .+.+|.++|+.+++....+.-..  ...+..++|+|+++.  +++.+++.            
T Consensus        77 t~gtpDGr~lfV~d~---~~~rVavIDl~t~k~~~ii~iP~--g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~  151 (441)
T d1qnia2          77 TDGRYDGKYLFINDK---ANTRVARIRLDIMKTDKITHIPN--VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL  151 (441)
T ss_dssp             ETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECTT--CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred             ecccCCCCEEEEEcC---CCCEEEEEECCCCcEeeEEecCC--CCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence            556899999988753   36679999999999888776433  367899999999884  44444432            


Q ss_pred             -----cEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe-EEEEECCCCceeeecccccCceeeeeecC
Q 001362          601 -----VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR-IKILETPESNSVDAAGVLSDNLRKLSVNP  674 (1092)
Q Consensus       601 -----~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~v~~~~~~~  674 (1092)
                           .+..+|..+.+...++...+.   ...++|+|+|+++++.+.+.. +..++..+....                 
T Consensus       152 ~~~~~~~~~iD~~t~~v~~qI~v~~~---p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~-----------------  211 (441)
T d1qnia2         152 DNSYTMFTAIDAETMDVAWQVIVDGN---LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDR-----------------  211 (441)
T ss_dssp             GGEEEEEEEEETTTCSEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSB-----------------
T ss_pred             ccccceEEeecCccceeeEEEecCCC---ccceEECCCCCEEEEEecCCCceEEEeccCcceE-----------------
Confidence                 235688888888887776543   678999999999998876532 111111111000                 


Q ss_pred             CCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeec
Q 001362          675 ISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS  754 (1092)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~  754 (1092)
                                                       ..+.+.+.                     -..++++++|+++.. +.
T Consensus       212 ---------------------------------d~i~v~n~---------------------p~~~~~~~dGk~~~v-~~  236 (441)
T d1qnia2         212 ---------------------------------DWVVVFNV---------------------ERIAAAVKAGNFKTI-GD  236 (441)
T ss_dssp             ---------------------------------CEEEEEEH---------------------HHHHHHHHTTCCBCC-TT
T ss_pred             ---------------------------------EEEEeCCc---------------------cceEEEecCCCEEEe-CC
Confidence                                             00111110                     011234556664432 23


Q ss_pred             CCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCC
Q 001362          755 NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT  832 (1092)
Q Consensus       755 dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~  832 (1092)
                      ++.+.++....                      ...+....     -......+.++|||+++++++  ++++.+||+.+
T Consensus       237 ~~v~vvd~~~~----------------------~~v~~~IP-----vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         237 SKVPVVDGRGE----------------------SEFTRYIP-----VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             CCCCEEECSSS----------------------CSSEEEEC-----CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             CCcEEEEcccC----------------------CceEEEEe-----CCCCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            34444433211                      11122211     122345789999999998876  69999999875


Q ss_pred             ceee--------EEecC---CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc----------eeeEee-----cccc
Q 001362          833 FKTI--------LTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS----------EVISKL-----EGHS  886 (1092)
Q Consensus       833 ~~~~--------~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~----------~~~~~l-----~~h~  886 (1092)
                      .+..        ..+.+   ..-.....+|++ ++..+.+...|..|..|++...          ..+..+     .||.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~  368 (441)
T d1qnia2         290 LDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHN  368 (441)
T ss_dssp             HHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEE
T ss_pred             hhhHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCC
Confidence            3311        11111   112345568999 8888999999999999998521          233444     5788


Q ss_pred             CCeEEEEEcCCCCEEEEEe
Q 001362          887 KRVTGLVFSDALNILVSSG  905 (1092)
Q Consensus       887 ~~V~~l~~spdg~~l~s~s  905 (1092)
                      ..+.+.+++|||++|++++
T Consensus       369 ~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         369 HASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EETTTTSTTCCCCEEEEEE
T ss_pred             ccccccccCCCCcEEEecC
Confidence            8888889999999999994

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.52  E-value=2.3e-15  Score=162.97  Aligned_cols=360  Identities=10%  Similarity=0.002  Sum_probs=218.9

Q ss_pred             CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Q 001362          345 VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA  424 (1092)
Q Consensus       345 dg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd  424 (1092)
                      |+-+.+++|+.+|.|+||++.+++.+..                   +     +    .|+|++... .|..+.+.+++.
T Consensus         9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~-------------------I-----p----Vfspd~~~g-~g~~~es~~vl~   59 (441)
T d1qnia2           9 DEYYGFWSGGHQGEVRVLGVPSMRELMR-------------------I-----P----VFNVDSATG-WGITNESKEILG   59 (441)
T ss_dssp             CSEEEEEECBTTCCEEEEEETTTEEEEE-------------------E-----C----SSSBCTTTC-TTTSHHHHHHHC
T ss_pred             CCEEEEEeCCCCCcEEEEeCCCCcEEEE-------------------E-----E----eEcCCCCEE-EEECCccceEEe
Confidence            4446678899999999999999988764                   1     1    278887642 232222222221


Q ss_pred             ccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCcCeEEEeecccCCccEEE
Q 001362          425 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIF  503 (1092)
Q Consensus       425 ~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~  503 (1092)
                        ++....   .-..|.-......++|||++ ++++...+++|.++|++++++...+.. +...+..++|++.+.-.+++
T Consensus        60 --~~~~~~---~gd~hhP~~s~t~gtpDGr~-lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~  133 (441)
T d1qnia2          60 --GDQQYL---NGDCHHPHISMTDGRYDGKY-LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVF  133 (441)
T ss_dssp             --SSSCCS---CCCBCCCEEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEE
T ss_pred             --cccccc---cCcccCCCcceecccCCCCE-EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEE
Confidence              111111   12235555667778999996 456677889999999999998887753 56678889997655444666


Q ss_pred             EEecCC-----------------eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001362          504 SISVDG-----------------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1092)
Q Consensus       504 s~~~dg-----------------~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1092)
                      ..+.+.                 .+..+|..+.+........ .....+.++|||+++++.+.+.+   .+..++..+..
T Consensus       134 ~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse---~~~~id~~t~~  209 (441)
T d1qnia2         134 CNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSE---RAVDLAGTMRN  209 (441)
T ss_dssp             EEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTT---CCSSHHHHTCS
T ss_pred             eccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCC---ceEEEeccCcc
Confidence            555443                 2355777776665544433 34677999999999998765332   13333444443


Q ss_pred             EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEE-EeCCCe
Q 001362          567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENR  645 (1092)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~  645 (1092)
                      ....+....    ....+.+.|+|+++.. +.++.+.+++......+..+.....   ...+.++|||+++++ +..+++
T Consensus       210 ~~d~i~v~n----~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSPDGkyl~~~~~~~~t  281 (441)
T d1qnia2         210 DRDWVVVFN----VERIAAAVKAGNFKTI-GDSKVPVVDGRGESEFTRYIPVPKN---PHGLNTSPDGKYFIANGKLSPT  281 (441)
T ss_dssp             SBCEEEEEE----HHHHHHHHHTTCCBCC-TTCCCCEEECSSSCSSEEEECCBSS---CCCEEECTTSCEEEEECTTSSB
T ss_pred             eEEEEEeCC----ccceEEEecCCCEEEe-CCCCcEEEEcccCCceEEEEeCCCC---ccCceECCCCCEEEEeCCcCCc
Confidence            333332221    1223456788887655 4467888888888788888876533   578999999998765 456899


Q ss_pred             EEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccc
Q 001362          646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  725 (1092)
Q Consensus       646 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~  725 (1092)
                      +.+||+....  ..+.+......++...+                                                   
T Consensus       282 vsv~d~~k~~--~~~~~~~~~~~~~~~~~---------------------------------------------------  308 (441)
T d1qnia2         282 VSVIAIDKLD--DLFEDKIELRDTIVAEP---------------------------------------------------  308 (441)
T ss_dssp             EEEEEGGGHH--HHTTTSSCGGGGEEECC---------------------------------------------------
T ss_pred             EEEEEeehhh--hHhhccCCcceEEEeec---------------------------------------------------
Confidence            9999987421  11111111111111100                                                   


Q ss_pred             cccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCe
Q 001362          726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  805 (1092)
Q Consensus       726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v  805 (1092)
                            ...-.....+|.++|..+.+..-|..+..|++........+..    .-.+|+..      .... ..+|...+
T Consensus       309 ------~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~----~~~v~~~~------~v~y-~~GH~~~~  371 (441)
T d1qnia2         309 ------ELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDR----VNYIRQKL------DVQY-QPGHNHAS  371 (441)
T ss_dssp             ------BCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCC----CCCEEEEE------ECSS-CEEEEEET
T ss_pred             ------ccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCC----CceeEecc------cccc-CCCCCccc
Confidence                  0111234467899998888888899999999753211111110    11112100      0000 11477777


Q ss_pred             eEEEEecCCCEEEEEe
Q 001362          806 PCFALSKNDAYLFSAS  821 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~s  821 (1092)
                      .+.+++|||++|++++
T Consensus       372 ~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         372 LTESRDADGKWLVVLS  387 (441)
T ss_dssp             TTTSTTCCCCEEEEEE
T ss_pred             cccccCCCCcEEEecC
Confidence            7788999999999995

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.25  E-value=1.1e-08  Score=110.62  Aligned_cols=161  Identities=13%  Similarity=0.131  Sum_probs=103.0

Q ss_pred             CCeeEEEEecCCCEEEEEe--CCeEEEEEcCC-ceee--EEe--cCCCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEEcC
Q 001362          803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTI--LTI--MPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR  874 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~--~~~--~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~  874 (1092)
                      ..+.+++|+|||+++++++  .+.|.+|+... +...  ...  .......+.++|+| +++++.+.. .+++|.+|++.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEec
Confidence            3467899999999999887  36788887653 2221  222  22346789999999 777775544 57899999997


Q ss_pred             CceeeEeec-------------------cccCCeEEEEEcCCCCEEEEEeC-C-----CcEEEEEcCCCc-eeeeeeeec
Q 001362          875 SSEVISKLE-------------------GHSKRVTGLVFSDALNILVSSGG-D-----AQIFVWDVDGWG-IQTCRSLQT  928 (1092)
Q Consensus       875 ~~~~~~~l~-------------------~h~~~V~~l~~spdg~~l~s~s~-D-----g~i~iwd~~~~~-~~~~~~~~~  928 (1092)
                      .++......                   .+......+.++|||++|+++.+ +     +.|..|++.... ......+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            654321110                   12223567899999999887643 2     237777776432 222112211


Q ss_pred             CCCCcCCCCCceEEEEec-CCCEEEEE--eCCcEEEEEcCCc
Q 001362          929 PDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEEL  967 (1092)
Q Consensus       929 ~~~~~~~~~~v~~l~~s~-dg~~la~~--~d~~i~lwd~~~~  967 (1092)
                      ....   ......++|+| +|++|+++  .++.|.+|++...
T Consensus       304 ~~~~---G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         304 TPTS---GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CSSC---CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEcC---CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            1111   12456799998 89988875  5688999987543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.23  E-value=3e-09  Score=115.15  Aligned_cols=254  Identities=10%  Similarity=0.109  Sum_probs=151.8

Q ss_pred             CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCC-ceeeEEe-cCCCCCeEEEEEcCCCCCEE--EEEe-CCCcEEEEEcCC
Q 001362          801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTI-MPPSPTATSLAFNPHDNNVI--AIGM-DDSTILIYNARS  875 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~-~~~~~~~-~~~~~~i~~l~~s~~d~~~l--asg~-~dg~v~iwd~~~  875 (1092)
                      ....+..++|++++++|.++..+.+..|.+.. +...... .........+++++ +++.+  +++. ..+.|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccC
Confidence            34456779999999999988888888887653 2222221 12234456788888 67643  3322 235565554422


Q ss_pred             -c------------ee---eE-eeccccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCC-ceeeeeeeecCCCCcCCC
Q 001362          876 -S------------EV---IS-KLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGW-GIQTCRSLQTPDGVMTLA  936 (1092)
Q Consensus       876 -~------------~~---~~-~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~  936 (1092)
                       +            +.   .. .-......+.+++|+|||+++++++. ...|.+|++... .............    .
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~----g  192 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP----G  192 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST----T
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC----C
Confidence             1            10   00 01112234789999999998888764 346888876543 2222222222211    1


Q ss_pred             CCceEEEEecCCCEEEEE--eCCcEEEEEcCCceeeeeec------------------cCCCCCEEEEEEecCCCEEEEE
Q 001362          937 PSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWF------------------PISSVPISQATFSCDCRMVFTS  996 (1092)
Q Consensus       937 ~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~~~~~~~------------------~~h~~~v~~l~fs~dg~~l~t~  996 (1092)
                      .....++|+|||+++.+.  .+++|.+|++..+.......                  ..+......+.++|||++|+++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            357899999999998874  45789999987654221100                  0112345678999999999887


Q ss_pred             EC-C-----CcEEEEEcCCCceEEeec-cccccCCCCccCcccceEEEECCCCCCEEEEE-eCCCcEEEEeCCCCC
Q 001362          997 FV-D-----GTLSIHEASNLEVQCRIL-STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG-LTNGEVYVIEPNEPG 1064 (1092)
Q Consensus       997 ~~-D-----g~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~-~~dg~v~~w~~~~~~ 1064 (1092)
                      .. +     +.|..|++.....+.+.. .......+     -.+..++++|.++++|+++ ..++.|.+|++....
T Consensus       273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G-----~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG-----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC-----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCC-----CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            53 2     237788876543332222 11111111     2355688998667766555 567899999986544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.2e-09  Score=118.57  Aligned_cols=374  Identities=9%  Similarity=-0.004  Sum_probs=207.3

Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe---------CCCcEEEEE
Q 001362          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG---------DDHVIKIWD  606 (1092)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s---------~dg~i~iwd  606 (1092)
                      .|.+++.++..     +.++.|.+||..+++....+.........+....|+||+++++...         ..+.+.++|
T Consensus        23 ~W~~~~~~~~~-----~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d   97 (465)
T d1xfda1          23 KWISDTEFIYR-----EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (465)
T ss_dssp             CBSSSSCBCCC-----CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             EEeCCCcEEEE-----eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence            46777776543     2244599999998877555555443344677788999999988764         357789999


Q ss_pred             CCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCC
Q 001362          607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  686 (1092)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  686 (1092)
                      +.++..............+....|||||+.+|.... +.|.+.+..++...+........                    
T Consensus        98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~-~nl~~~~~~~~~~~~lt~~g~~~--------------------  156 (465)
T d1xfda1          98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG--------------------  156 (465)
T ss_dssp             SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTT--------------------
T ss_pred             ccCCceeeccCccCCccccceeeeccCCceEEEEec-ceEEEEecCCCceEEEecccCcc--------------------
Confidence            999886554443333345667899999999988764 67888877766444332211100                    


Q ss_pred             ceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-CeeEEEeecC
Q 001362          687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPR  765 (1092)
Q Consensus       687 ~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~lw~~~~  765 (1092)
                                   .+..|-.|     |-.+.              .-...-.++.|||||+.|+....| ..+..+.++.
T Consensus       157 -------------~i~nG~~d-----~vyee--------------e~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~  204 (465)
T d1xfda1         157 -------------VIYNGLSD-----WLYEE--------------EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPT  204 (465)
T ss_dssp             -------------TEEEEECC-----HHHHH--------------TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECC
T ss_pred             -------------eeeccccc-----hhhhh--------------hhccccceEEECCCCCeEEEEEecccccceeeccc
Confidence                         00000000     10000              000111356678888777776543 5555555543


Q ss_pred             CCc-----------CcCcccccccCCccccCCCCCceeeecCCC--CCCCCCeeEEEEecCCCEEEEEeC-----CeEEE
Q 001362          766 NDL-----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTD--SNSQEAVPCFALSKNDAYLFSASG-----GVISL  827 (1092)
Q Consensus       766 ~~~-----------~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~--~~~~~~v~~~~~s~dg~~l~~~sd-----g~i~i  827 (1092)
                      ...           ...|.......+.++++.++..........  .....-+..+.|++++++++...+     ..+.+
T Consensus       205 ~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~  284 (465)
T d1xfda1         205 YTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL  284 (465)
T ss_dssp             CSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred             ccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEE
Confidence            211           111222222345556665554222111110  012223677899999987777642     24888


Q ss_pred             EEcCCceeeEEecCCC-CC----eEEEEEcCCCCCEEE---EEeCCC--cEEEEEcC------CceeeEeeccccCCeEE
Q 001362          828 YIVMTFKTILTIMPPS-PT----ATSLAFNPHDNNVIA---IGMDDS--TILIYNAR------SSEVISKLEGHSKRVTG  891 (1092)
Q Consensus       828 wd~~~~~~~~~~~~~~-~~----i~~l~~s~~d~~~la---sg~~dg--~v~iwd~~------~~~~~~~l~~h~~~V~~  891 (1092)
                      +|..++++...+.... ..    -....|++ |++.++   ....+|  .++...+.      .++.+..+....-.|..
T Consensus       285 ~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~  363 (465)
T d1xfda1         285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK  363 (465)
T ss_dssp             EETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred             EcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEE
Confidence            9999988765543222 11    23467899 665332   222333  34433322      23444555544555666


Q ss_pred             E-EEcCCCCEEE-EEeCCC--cEEEEEcC--CCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCC----cEEE
Q 001362          892 L-VFSDALNILV-SSGGDA--QIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAI  961 (1092)
Q Consensus       892 l-~~spdg~~l~-s~s~Dg--~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~----~i~l  961 (1092)
                      + +|.++++.+. ++..++  .-.||.+.  ++..  ..++.......   ....++.|||+|++++....+    .+.+
T Consensus       364 i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~--~~~lt~~~~~~---~~~~~~~~S~~~~y~v~~~s~~~~P~~~~  438 (465)
T d1xfda1         364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN--RQCLSCDLVEN---CTYFSASFSHSMDFFLLKCEGPGVPMVTV  438 (465)
T ss_dssp             EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC--CBCSSTTSSSS---CCCCEEEECTTSSEEEEECCSSSSCCEEE
T ss_pred             EEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc--ceeeccccCCC---CCEEEEEECCCCCEEEEEeecCCCCeEEE
Confidence            4 6888877765 443332  23455543  3221  12222211111   246789999999999874322    4777


Q ss_pred             EEcCCceeeeee
Q 001362          962 YEAEELTCLKQW  973 (1092)
Q Consensus       962 wd~~~~~~~~~~  973 (1092)
                      ++..+++.+..+
T Consensus       439 ~~~~~~~~~~~L  450 (465)
T d1xfda1         439 HNTTDKKKMFDL  450 (465)
T ss_dssp             EETTTCCEEEEE
T ss_pred             EECCCCCEEEEE
Confidence            777777766653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.5e-08  Score=104.82  Aligned_cols=238  Identities=10%  Similarity=0.123  Sum_probs=143.2

Q ss_pred             cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCC---EEEEEEccCCCcccce
Q 001362          358 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH---IVQLYAYHGGSDARQQ  434 (1092)
Q Consensus       358 ~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~---~i~iwd~~~~~~~~~~  434 (1092)
                      .|.|-|...+....                    +..+...+.+.+|||||++||......   .+.+.+..++...   
T Consensus        20 ~l~i~d~dG~~~~~--------------------l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~---   76 (269)
T d2hqsa1          20 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---   76 (269)
T ss_dssp             EEEEEETTSCSCEE--------------------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---
T ss_pred             EEEEEcCCCCCcEE--------------------EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee---
Confidence            57777876554443                    334567788999999999999875433   4666676665432   


Q ss_pred             EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE--ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeE-
Q 001362          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI-  511 (1092)
Q Consensus       435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i-  511 (1092)
                       .+..+.+......|+|||+.+. .....++...++  ........... ..........+... ....+++...+|.. 
T Consensus        77 -~~~~~~~~~~~~~~spdg~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~  152 (269)
T d2hqsa1          77 -QVASFPRHNGAPAFSPDGSKLA-FALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPD-SQNLAFTSDQAGRPQ  152 (269)
T ss_dssp             -EEECCSSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTT-SSEEEEEECTTSSCE
T ss_pred             -EEeeeecccccceecCCCCeee-EeeecCCccceeecccccccceeee-eccccccccccccc-cccceecccccCCce
Confidence             3456778888999999999632 233333333333  22222222222 22222223333332 22345555556654 


Q ss_pred             -EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC
Q 001362          512 -KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK  590 (1092)
Q Consensus       512 -~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  590 (1092)
                       .+.++...... .............++|+++.++...... +...+.+.+...+..... . ..   .......|+|||
T Consensus       153 i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~-~~---~~~~~p~~SPDG  225 (269)
T d2hqsa1         153 VYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQVL-S-ST---FLDETPSLAPNG  225 (269)
T ss_dssp             EEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECS-SCEEEEEEETTTCCEEEC-C-CS---SSCEEEEECTTS
T ss_pred             Eeeeecccccce-eeecccccccccccccccceeEEEeecC-CceeeeEeecccccceEe-e-cC---ccccceEECCCC
Confidence             44455444332 3344455677889999999999877543 356677778776654322 2 22   456778899999


Q ss_pred             CEEEEEeC---CCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001362          591 DQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       591 ~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      +.|+..+.   ...++++++..+.... +....  ..+...+|||
T Consensus       226 ~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~~--g~~~~p~WSP  267 (269)
T d2hqsa1         226 TMVIYSSSQGMGSVLNLVSTDGRFKAR-LPATD--GQVKFPAWSP  267 (269)
T ss_dssp             SEEEEEEEETTEEEEEEEETTSCCEEE-CCCSS--SEEEEEEECC
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEE-EeCCC--CcEEeEEeCC
Confidence            99876543   3568899998766544 33222  2356778887

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.10  E-value=2.4e-08  Score=104.89  Aligned_cols=245  Identities=11%  Similarity=0.039  Sum_probs=160.5

Q ss_pred             CCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE
Q 001362          321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  400 (1092)
Q Consensus       321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~  400 (1092)
                      .-|.+.+..+...+ .+..++++|||+ |+++...+++|..|+.... ...                    +......+.
T Consensus        15 ~~~~~v~~~~p~~~-~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~-~~~--------------------~~~~~~~~~   71 (302)
T d2p4oa1          15 LAPAKIITSFPVNT-FLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQI--------------------HATVEGKVS   71 (302)
T ss_dssp             CCCEEEEEEECTTC-CEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEE--------------------EEECSSEEE
T ss_pred             CCcccEEEECCCCC-CcCCEEECCCCC-EEEEeCCCCEEEEEeCCCC-EEE--------------------EEcCCCCcc
Confidence            33455566665544 688999999998 7888888999988886543 221                    223557899


Q ss_pred             EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001362          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      +++|+|||+++++...++.+..|+......................+++.++++  ++++.+.++.+..+|..++.....
T Consensus        72 gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~  149 (302)
T d2p4oa1          72 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW  149 (302)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeE
Confidence            999999999999988888888888765432222111223445678999999998  788888889999999887754332


Q ss_pred             Eec--------C--CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEEEEccCCCEEEEEe
Q 001362          481 FEG--------H--GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       481 ~~~--------~--~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      ...        +  ......+.+  . ++.++++.+..+.|..++.........  ..........+++.++|+..++..
T Consensus       150 ~~~~~~~~~~~~~~~~~~ngi~~--~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~  226 (302)
T d2p4oa1         150 LEHPMLARSNSESVFPAANGLKR--F-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH  226 (302)
T ss_dssp             EECGGGSCSSTTCCSCSEEEEEE--E-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB
T ss_pred             ecCCccceeeccCcccccccccc--c-CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEc
Confidence            221        1  112334444  2 235667777888888888766443221  111223455799999999766654


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEE---cCCCCEEEEEeCC
Q 001362          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF---DTAKDQILAAGDD  599 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~---~p~~~~l~~~s~d  599 (1092)
                      .    .+.|..++... +......... ......+++|   ++|++.|++++..
T Consensus       227 ~----~~~V~~i~p~G-~~~~~~~~~~-~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         227 I----YNSVVRIAPDR-STTIIAQAEQ-GVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             T----TCCEEEECTTC-CEEEEECGGG-TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             C----CCcEEEECCCC-CEEEEEecCC-CCCCceEEEEcCCCCCCCEEEEECCC
Confidence            3    44588888754 3333332221 1246789999   6788888776644

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.1e-07  Score=98.09  Aligned_cols=237  Identities=15%  Similarity=0.096  Sum_probs=146.3

Q ss_pred             CCCcceeeecccCCCCceEEeecCCCceEEEEEcCCC--cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCc
Q 001362          321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS  398 (1092)
Q Consensus       321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~--~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~  398 (1092)
                      +......+.+..+.+.+...+|||||++|+.+....+  .+.+.+..++....                    +..+...
T Consensus        25 d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~   84 (269)
T d2hqsa1          25 DYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRH   84 (269)
T ss_dssp             ETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EECCSSC
T ss_pred             cCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Eeeeecc
Confidence            3344445555556668899999999997655554443  36666666655432                    4457788


Q ss_pred             EEEEEECCCCCEEEEEeC-CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc--EEEEECCCC
Q 001362          399 VNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTG  475 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~  475 (1092)
                      .....|||||+.++.... ++...++.........  .....+........+++++.. .+++...++.  |.+.++..+
T Consensus        85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~  161 (269)
T d2hqsa1          85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGG  161 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSS
T ss_pred             cccceecCCCCeeeEeeecCCccceeecccccccc--eeeeecccccccccccccccc-ceecccccCCceEeeeecccc
Confidence            899999999999988754 3333333333222111  122334445556678888875 4455555554  555565555


Q ss_pred             ceeEEEecCCcCeEEEeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001362          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      ... .+..+........++  +++..++..+. .+...+|..+...................|||||+.|+..+.. .+.
T Consensus       162 ~~~-~~~~~~~~~~~~~~s--pdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~-~~~  237 (269)
T d2hqsa1         162 APQ-RITWEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ-GMG  237 (269)
T ss_dssp             CCE-ECCCSSSEEEEEEEC--TTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE-TTE
T ss_pred             cce-eeecccccccccccc--cccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC-CCC
Confidence            433 333344445555664  46666665544 4555666555444444455555667788999999999876643 346


Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001362          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p  588 (1092)
                      ..|+++++..+...+ +....   +.+...+|+|
T Consensus       238 ~~l~~~~~dg~~~~~-lt~~~---g~~~~p~WSP  267 (269)
T d2hqsa1         238 SVLNLVSTDGRFKAR-LPATD---GQVKFPAWSP  267 (269)
T ss_dssp             EEEEEEETTSCCEEE-CCCSS---SEEEEEEECC
T ss_pred             cEEEEEECCCCCEEE-EeCCC---CcEEeEEeCC
Confidence            789999998776543 44434   5677888988

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.96  E-value=1.3e-07  Score=96.59  Aligned_cols=238  Identities=10%  Similarity=0.052  Sum_probs=153.6

Q ss_pred             CCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001362          801 SQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1092)
                      +......++++++|...++..  .+.+..++...................+++++ +++++++....+.+++++-.++..
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence            445668999999999776654  36676666554332222222234567899999 888888777777777776555554


Q ss_pred             eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCC
Q 001362          879 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET  957 (1092)
Q Consensus       879 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~  957 (1092)
                      +....+ .....++++.++++++++-.....+..++.......    .....+..    ....++++++|+++++ ..++
T Consensus        91 ~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~----~~~~~~~~----~p~~i~~~~~g~~~v~~~~~~  161 (260)
T d1rwia_          91 VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----VLPFTGLN----DPDGVAVDNSGNVYVTDTDNN  161 (260)
T ss_dssp             ECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE----ECCCCSCC----SCCEEEECTTCCEEEEEGGGT
T ss_pred             eeeeee-eeecccccccccceeEeeccccccccccccccceee----eeeecccC----CcceeeecCCCCEeeeccccc
Confidence            444332 345789999999998887766777777776653311    11111211    3578999999998777 4667


Q ss_pred             cEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccceEEE
Q 001362          958 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1037 (1092)
Q Consensus       958 ~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1037 (1092)
                      .|..++........ +..........+++.++|.++++....+.|..++....... .+.      .   ..--.|..++
T Consensus       162 ~i~~~d~~~~~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~------~---~~~~~P~~i~  230 (260)
T d1rwia_         162 RVVKLEAESNNQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP------F---TGLNTPLAVA  230 (260)
T ss_dssp             EEEEECTTTCCEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECC------C---CSCCCEEEEE
T ss_pred             cccccccccceeee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEc------c---CCCCCeEEEE
Confidence            89999977544332 23344566789999999998888877888888876654322 111      0   1112466789


Q ss_pred             ECCCCCCEEEEEeCCCcEEEEeC
Q 001362         1038 AHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus      1038 ~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
                      +++ ++.++++-..+++|+..+.
T Consensus       231 ~d~-~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         231 VDS-DRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             ECT-TCCEEEEEGGGTEEEEECC
T ss_pred             EeC-CCCEEEEECCCCEEEEEeC
Confidence            998 4677777666676665554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.96  E-value=7.9e-08  Score=98.24  Aligned_cols=238  Identities=9%  Similarity=-0.028  Sum_probs=149.3

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      ....++++++|+.+++..+..+.+..++..+......                   ..+-......++++++|+++++..
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~gvav~~~g~i~v~d~   75 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTDF   75 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------------------CCCSCCSCCCEEECTTCCEEEEET
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------------------ccCCccCceEEEEcCCCCEEEeee
Confidence            5689999999985555555567777776654432211                   111123456789999999887777


Q ss_pred             CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001362          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  495 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  495 (1092)
                      ..+.+++++-.++..+.   .. ........+++.++++  ++++-.....+..++...................+++.+
T Consensus        76 ~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~  149 (260)
T d1rwia_          76 NNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN  149 (260)
T ss_dssp             TTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT
T ss_pred             eeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceeeecC
Confidence            77777776655543222   11 2234578899999998  666666667777777555432221112223456777744


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001362          496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1092)
Q Consensus       496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1092)
                        ++.++++...++.|..++.+.................+++.++|+.+++...    .+.|..++...... ..+....
T Consensus       150 --~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~----~~~i~~~~~~~~~~-~~~~~~~  222 (260)
T d1rwia_         150 --SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTS-TVLPFTG  222 (260)
T ss_dssp             --TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TTEEEEECTTCSCC-EECCCCS
T ss_pred             --CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC----CCEEEEEeCCCCeE-EEEccCC
Confidence              6678888888899999987765544433334456788999999987776543    55688887654432 2222111


Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001362          576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       576 ~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~  607 (1092)
                        ......++++++++.+++-..++.|+.++.
T Consensus       223 --~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         223 --LNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             --CCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             --CCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence              245688999999887776566666665554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.92  E-value=2.5e-07  Score=97.09  Aligned_cols=240  Identities=13%  Similarity=0.137  Sum_probs=154.6

Q ss_pred             CeeEEEEecCCCEEEEEe--------CCeEEEEEcCCceeeEEecCC----CCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 001362          804 AVPCFALSKNDAYLFSAS--------GGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIY  871 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s--------dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~dg~v~iw  871 (1092)
                      ....++|.++|+++++..        +++|..||..++.........    ......++|.+ ++..|+++...+.+..+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence            356789999999887653        356888898877654433221    23457899999 78877778777778889


Q ss_pred             EcCCceeeEeecccc----CCeEEEEEcCCCCEEEEEeC---------------CCcEEEEEcCCCceeeeeeeecCCCC
Q 001362          872 NARSSEVISKLEGHS----KRVTGLVFSDALNILVSSGG---------------DAQIFVWDVDGWGIQTCRSLQTPDGV  932 (1092)
Q Consensus       872 d~~~~~~~~~l~~h~----~~V~~l~~spdg~~l~s~s~---------------Dg~i~iwd~~~~~~~~~~~~~~~~~~  932 (1092)
                      +..++..........    .....+++.++|++.++-..               +|.|..++.+. +..  .......  
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~--~~~~~~~--  172 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMI--QVDTAFQ--  172 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEE--EEEEEES--
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-cee--EeeCCcc--
Confidence            987654222111111    13577999999999887532               22344343332 211  1111111  


Q ss_pred             cCCCCCceEEEEecCCC----EEEEE--eCCcEEEEEcCCceeee------eeccCCCCCEEEEEEecCCCEEEEEECCC
Q 001362          933 MTLAPSETHIQFHKDQT----RFLLV--HETHLAIYEAEELTCLK------QWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus       933 ~~~~~~v~~l~~s~dg~----~la~~--~d~~i~lwd~~~~~~~~------~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg 1000 (1092)
                           ....++|+|++.    .|.++  ..+.|..||+.....+.      .+...+......+++..+|++.++....+
T Consensus       173 -----~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g  247 (314)
T d1pjxa_         173 -----FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             -----SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             -----eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence                 245799999875    44443  55778888875332221      11112234567899999999888887889


Q ss_pred             cEEEEEcCCCceEEeeccccccCCCCccCcccceEEEECCCCCC-EEEEEeCCCcEEEEeCCCCCC
Q 001362         1001 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT-QFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus      1001 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~-~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
                      .|.+||.+++.....+....          -.+.+++|.| |++ ++++.+.+|.|...++..++.
T Consensus       248 ~I~~~dp~~g~~~~~i~~p~----------~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~~G~  302 (314)
T d1pjxa_         248 HIEVFGPDGGQPKMRIRCPF----------EKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRNGK  302 (314)
T ss_dssp             EEEEECTTCBSCSEEEECSS----------SCEEEEEECT-TSSEEEEEETTTTEEEEEECSSCBC
T ss_pred             EEEEEeCCCCEEEEEEECCC----------CCEEEEEEeC-CCCEEEEEECCCCcEEEEECCCCCh
Confidence            99999999888776654211          1345788998 455 667777889999999877764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.89  E-value=1.6e-07  Score=98.45  Aligned_cols=235  Identities=10%  Similarity=0.037  Sum_probs=148.8

Q ss_pred             CCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee-eE
Q 001362          803 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-IS  880 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~~  880 (1092)
                      ..+..++++|||+++++.. +++|..|+... + ...+......+.+++|++ +++++++...++.+..|+...... ..
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence            3578899999999988876 68888888553 3 334444667899999999 889999988888888888754321 11


Q ss_pred             ee--ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC--CCcCCCCCceEEEEecCCCEEEE--E
Q 001362          881 KL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD--GVMTLAPSETHIQFHKDQTRFLL--V  954 (1092)
Q Consensus       881 ~l--~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~~s~dg~~la~--~  954 (1092)
                      .+  .........+++.++|+++++.+.++.+..++..++.......-....  ...........++++  +..+..  .
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~  182 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT  182 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence            22  124456889999999999999888998888888876432211111000  111101123445554  455544  4


Q ss_pred             eCCcEEEEEcCCceeeeee-ccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccCcccc
Q 001362          955 HETHLAIYEAEELTCLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1033 (1092)
Q Consensus       955 ~d~~i~lwd~~~~~~~~~~-~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1033 (1092)
                      ..+.|..++.......... ...+......++|++||+++++...++.|..++....... .....        .....+
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~-~~~~~--------~~~~~p  253 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTI-IAQAE--------QGVIGS  253 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEE-EECGG--------GTCTTE
T ss_pred             CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEE-EEecC--------CCCCCc
Confidence            5677888887654332211 1112345667999999998888888899998876643222 11100        111246


Q ss_pred             eEEEE---CCCCCCEEEEEeCC
Q 001362         1034 HAIAA---HPLKPTQFAVGLTN 1052 (1092)
Q Consensus      1034 ~~~~~---~p~~~~~l~~~~~d 1052 (1092)
                      .+++|   .| |++.|.+++..
T Consensus       254 t~vafg~~~~-D~~~Lyvtt~~  274 (302)
T d2p4oa1         254 TAVAFGQTEG-DCTAIYVVTNG  274 (302)
T ss_dssp             EEEEECCSTT-TTTEEEEEECT
T ss_pred             eEEEEcCCCC-CCCEEEEECCC
Confidence            67888   44 56666665543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.88  E-value=6e-07  Score=94.04  Aligned_cols=246  Identities=14%  Similarity=0.090  Sum_probs=154.3

Q ss_pred             CceEEeecCCCceEEEEEcC-------CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001362          336 SPMSMDFHPVQHTLLLVGTN-------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~-------d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      ....++|.|||+ ++++...       +++|..||..++.......-               ...........++|.++|
T Consensus        19 g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---------------~~~~~~g~P~Gl~~~~dg   82 (314)
T d1pjxa_          19 GAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------EVNGYGGIPAGCQCDRDA   82 (314)
T ss_dssp             TCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECC---------------EETTEECCEEEEEECSSS
T ss_pred             CCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECC---------------ccccCCCcceeEEEeCCC
Confidence            567789999998 4444322       36788899888765432100               011112346789999999


Q ss_pred             CEEEEEeCCCEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEeC---------------CCcEEEEEC
Q 001362          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---------------DKTIKVWDA  472 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~---------------d~~i~vwd~  472 (1092)
                      ..|+++...+.|...+..++..........+.. ...+.++|.++|.  +.++-..               +|.|..++.
T Consensus        83 ~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~  160 (314)
T d1pjxa_          83 NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFTT  160 (314)
T ss_dssp             SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred             CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEee
Confidence            988888877778888887653211000011111 1357899999998  5565321               234544543


Q ss_pred             CCCceeEEEecCCcCeEEEeecccCCc---cEEEEEecCCeEEEEEcCCCCceE------EecCC-CCceEEEEEccCCC
Q 001362          473 VTGSRTYSFEGHGAPVYSLCPHAKENI---HFIFSISVDGKIKAWLYDSLGARV------DYDAP-GLGCTRMAYSANGR  542 (1092)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~------~~~~~-~~~i~~~~~s~dg~  542 (1092)
                       .++..... .....-+.++|++..++   .+.++-+..+.|..|++.......      .+... ......+++..+|+
T Consensus       161 -dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn  238 (314)
T d1pjxa_         161 -DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             -TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred             -cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc
Confidence             34433322 23334467888765543   245556778889999876554322      11111 22456899999999


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECC
Q 001362          543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN  608 (1092)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~s~dg~i~iwd~~  608 (1092)
                      ..++...    .+.|.+||..++..+..+....   ....+++|.|+++.|+. .+.+|.|...++.
T Consensus       239 lyVa~~~----~g~I~~~dp~~g~~~~~i~~p~---~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         239 LLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEEEcC----CCEEEEEeCCCCEEEEEEECCC---CCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            7776543    5569999999888777666544   57889999999876644 5567878777764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.88  E-value=1.3e-06  Score=89.91  Aligned_cols=242  Identities=12%  Similarity=0.136  Sum_probs=162.1

Q ss_pred             ccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCC--CCCCCCCeeEEEEec
Q 001362          735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT--DSNSQEAVPCFALSK  812 (1092)
Q Consensus       735 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~--~~~~~~~v~~~~~s~  812 (1092)
                      .....++++++|+.+++-..+..|++|+.+.                       ..+..+...  ..+.......+++.+
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-----------------------~~~~~~~~~~~~~~~~~~p~~~~~~~   79 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-----------------------RFKFQFGECGKRDSQLLYPNRVAVVR   79 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTTS-----------------------CEEEEECCBSSSTTCBSSEEEEEEET
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCCC-----------------------CEEEEecccCCCcccccccccccccc
Confidence            3467899999999777767778888887321                       111111000  001222344566665


Q ss_pred             CCC-EEEEEe--CCeEEEEEcCCceeeEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee--cccc
Q 001362          813 NDA-YLFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL--EGHS  886 (1092)
Q Consensus       813 dg~-~l~~~s--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l--~~h~  886 (1092)
                      +.. ++++..  ++.|..++. .++....+.. .......+++.+ ++.++++....+.+.+++.. ++.+..+  ..+.
T Consensus        80 ~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~  156 (279)
T d1q7fa_          80 NSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHL  156 (279)
T ss_dssp             TTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTC
T ss_pred             cccccceeccCCccccccccc-cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cceeecccccccc
Confidence            544 444443  356777776 4666666543 345678999999 88888888878889998865 5666654  3466


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-E-eCCcEEEEEc
Q 001362          887 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEA  964 (1092)
Q Consensus       887 ~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~d~~i~lwd~  964 (1092)
                      .....+++.++++.+++....+.|++||.......   .+. ..+..   .....+++.++|+++++ . .+..|.+|+.
T Consensus       157 ~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~---~~g-~~g~~---~~P~giavD~~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         157 EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLR---QIG-GEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEE---EES-CTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             cccceeeeccceeEEeeeccccceeeeecCCceee---eec-ccccc---cCCcccccccCCeEEEEECCCCcEEEEECC
Confidence            77889999999999999888999999998763211   111 12222   25789999999998887 3 3456999984


Q ss_pred             CCceeeeeeccC-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001362          965 EELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       965 ~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
                       +|+.+..+... .......+++.+||.+++ +..+.+|++|+.....
T Consensus       230 -~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         230 -DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             -TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             -CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence             57766664332 244688999999997555 5678999999988764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.87  E-value=1.5e-06  Score=89.36  Aligned_cols=240  Identities=10%  Similarity=0.102  Sum_probs=160.9

Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCCCEEEEE-eCCCcEEEEEcCC
Q 001362          804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIG-MDDSTILIYNARS  875 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg-~~dg~v~iwd~~~  875 (1092)
                      ....++++++|+++++-. .+.|++||.+ ++.+..+...      ......+++.++.+.++++. +.++.|..++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            457899999999776654 5889999965 6666666321      11345667666345455443 344577777764 


Q ss_pred             ceeeEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-
Q 001362          876 SEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-  953 (1092)
Q Consensus       876 ~~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-  953 (1092)
                      ++....+. ........+++.++|+++++....+.+.+++.+.....   .+.... +.   .....+++.++|+++++ 
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~---~~g~~~-~~---~~~~~i~~d~~g~i~v~d  174 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH---KFGCSK-HL---EFPNGVVVNDKQEIFISD  174 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE---EEECTT-TC---SSEEEEEECSSSEEEEEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceee---cccccc-cc---cccceeeeccceeEEeee
Confidence            55555553 35566789999999999888887788888886652211   111111 11   25788999999988877 


Q ss_pred             EeCCcEEEEEcCCceeeeeec-cCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEEcCCCceEEeeccccccCCCCccCcc
Q 001362          954 VHETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFV-DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHV 1031 (1092)
Q Consensus       954 ~~d~~i~lwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~t~~~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1031 (1092)
                      ...+.|++||.. |+.+..+- .++......+++.++|+.+++-+. +++|.+|+ .+|+.+..+....        ..-
T Consensus       175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~--------~~~  244 (279)
T d1q7fa_         175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKV--------KHA  244 (279)
T ss_dssp             GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS--------CCS
T ss_pred             ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCC--------CCC
Confidence            456789999975 55555542 234556889999999998777543 45799998 4588776665211        112


Q ss_pred             cceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001362         1032 YPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1032 ~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
                      .+..+++.| |+. |++++.++.|++|+..--.
T Consensus       245 ~p~~vav~~-dG~-l~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         245 QCFDVALMD-DGS-VVLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             CEEEEEEET-TTE-EEEEETTTEEEEEECSCCC
T ss_pred             CEeEEEEeC-CCc-EEEEeCCCeEEEEEeeeec
Confidence            456788888 454 6667789999999985443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.8e-06  Score=95.62  Aligned_cols=228  Identities=10%  Similarity=0.073  Sum_probs=138.9

Q ss_pred             eecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-----
Q 001362          341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-----  415 (1092)
Q Consensus       341 ~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-----  415 (1092)
                      .|.+++.+ +.. ..+|.|.+||+.+++.......                ..-....+....|||||++++...     
T Consensus        23 ~W~~~~~~-~~~-~~~g~i~~~~~~~~~~~~l~~~----------------~~~~~~~~~~~~~SpD~~~vl~~~~~~~~   84 (465)
T d1xfda1          23 KWISDTEF-IYR-EQKGTVRLWNVETNTSTVLIEG----------------KKIESLRAIRYEISPDREYALFSYNVEPI   84 (465)
T ss_dssp             CBSSSSCB-CCC-CSSSCEEEBCGGGCCCEEEECT----------------TTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred             EEeCCCcE-EEE-eCCCcEEEEECCCCCEEEEEcC----------------ccccccccceeEECCCCCeEEEEEcccce
Confidence            57888873 433 4578999999998875432110                011223667788999999998874     


Q ss_pred             ----CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe-cCCcCe--
Q 001362          416 ----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPV--  488 (1092)
Q Consensus       416 ----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v--  488 (1092)
                          ..+.+.++|+.++.... +.........+....|||||+.  ++-.. ++.|.+.+..++..++... +..+.|  
T Consensus        85 ~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~n  160 (465)
T d1xfda1          85 YQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYN  160 (465)
T ss_dssp             SSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred             eEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCce--EEEEe-cceEEEEecCCCceEEEecccCcceeec
Confidence                34678999999876432 1112233456777899999996  43333 6678888887776655442 222212  


Q ss_pred             ---------------EEEeecccCCccEEEEEecC-C---------------------------------eEEEEEcCCC
Q 001362          489 ---------------YSLCPHAKENIHFIFSISVD-G---------------------------------KIKAWLYDSL  519 (1092)
Q Consensus       489 ---------------~~~~~~~~~~~~~l~s~~~d-g---------------------------------~i~vwd~~~~  519 (1092)
                                     .++.|  ++||++|+....| .                                 .+.++|+...
T Consensus       161 G~~d~vyeee~~~~~~a~~W--SPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~  238 (465)
T d1xfda1         161 GLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP  238 (465)
T ss_dssp             EECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred             cccchhhhhhhccccceEEE--CCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCC
Confidence                           23334  6688888876432 2                                 2334454443


Q ss_pred             CceEEecCC------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce----EEEEEcCC
Q 001362          520 GARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV----SVVHFDTA  589 (1092)
Q Consensus       520 ~~~~~~~~~------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v----~~~~~~p~  589 (1092)
                      .........      ..-+..+.|+++++.++...........+.++|..+|+....+....  ...|    ....|+|+
T Consensus       239 ~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~--~~wv~~~~~~p~~~~d  316 (465)
T d1xfda1         239 THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQNEEPVFSKD  316 (465)
T ss_dssp             CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCCCCCEECTT
T ss_pred             cEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC--CceEeccCCceeEccC
Confidence            332221111      11356788999998776655434445678899999998876665433  1222    23578899


Q ss_pred             CCEEE
Q 001362          590 KDQIL  594 (1092)
Q Consensus       590 ~~~l~  594 (1092)
                      |+.++
T Consensus       317 g~~~~  321 (465)
T d1xfda1         317 GRKFF  321 (465)
T ss_dssp             SCSEE
T ss_pred             CCeeE
Confidence            87543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.77  E-value=3.6e-06  Score=88.32  Aligned_cols=241  Identities=9%  Similarity=0.098  Sum_probs=152.5

Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC----CcEEEEEcCCcee
Q 001362          804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEV  878 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~v~iwd~~~~~~  878 (1092)
                      ....++|.++|+++++-. +++|..|+..+.+....+.........+++++ |++++++...+    +.+...+..++..
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCcee
Confidence            456899999998666553 68899999887766666655666788999999 88887765432    3455555555544


Q ss_pred             eEeecc--ccCCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCE
Q 001362          879 ISKLEG--HSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  950 (1092)
Q Consensus       879 ~~~l~~--h~~~V~~l~~spdg~~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~  950 (1092)
                      ......  -......+++.++|++.++....      +.+..++.+......  .....       .....++|+||++.
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~--~~~~~-------~~pnGia~s~dg~~  190 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKV  190 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSE
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEE--Eeecc-------ceeeeeeeccccce
Confidence            333322  12346789999999988765332      224444444322111  11111       13567999999997


Q ss_pred             EEEE--eCCcEEEEEcCCc-eeeee------eccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccc
Q 001362          951 FLLV--HETHLAIYEAEEL-TCLKQ------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021 (1092)
Q Consensus       951 la~~--~d~~i~lwd~~~~-~~~~~------~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~ 1021 (1092)
                      |.++  ..+.|..|++... .....      ...........+++.++|++.++....+.|.+|+- .|+.+.++.....
T Consensus       191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~  269 (319)
T d2dg1a1         191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR  269 (319)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG
T ss_pred             EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCc
Confidence            7653  5688999987632 11111      01111234678999999998888888999999994 7888888764332


Q ss_pred             cCCCCccCcccceEEEECCCCCCEEEEEeCC------CcEEEEeC
Q 001362         1022 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN------GEVYVIEP 1060 (1092)
Q Consensus      1022 ~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d------g~v~~w~~ 1060 (1092)
                      .+    .....+.+++|.|. ...+++...+      |.|+..+.
T Consensus       270 ~~----~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~g~l~~~~~  309 (319)
T d2dg1a1         270 DE----GHMLRSTHPQFIPG-TNQLIICSNDIEMGGGSMLYTVNG  309 (319)
T ss_dssp             GG----TCSCBCCEEEECTT-SCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             CC----CcCceeeeEEEeCC-CCEEEEEcCCCCcCCceeEEEEeC
Confidence            11    12334568899884 4555544432      34555554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.60  E-value=2.8e-05  Score=81.24  Aligned_cols=232  Identities=8%  Similarity=-0.006  Sum_probs=146.5

Q ss_pred             CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      .+..++|.++|+ |.++-...+.|.-|+.++++....                   ..........++|++||+++++..
T Consensus        41 ~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~va~~  100 (319)
T d2dg1a1          41 QLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFVCYL  100 (319)
T ss_dssp             CEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEEEEC
T ss_pred             CcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEE-------------------EeCCCCCeeEEEECCCCCEEEEec
Confidence            557899999998 777777789999999887764432                   223456788999999999888764


Q ss_pred             CC----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC------CCcEEEEECCCCceeEEEecCC
Q 001362          416 SK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHG  485 (1092)
Q Consensus       416 ~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~  485 (1092)
                      .+    +.+...+..++.... ...-..-......+++.++|+  +.++...      .+.+..++.+.+ .+..+...-
T Consensus       101 ~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~  176 (319)
T d2dg1a1         101 GDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNI  176 (319)
T ss_dssp             TTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEE
T ss_pred             CCCccceeEEEEcCCCceeee-eccCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEecccc-eeEEEeecc
Confidence            32    334444555443221 101011123577899999998  5555322      123555554433 333333333


Q ss_pred             cCeEEEeecccCCccE-EEEEecCCeEEEEEcCCCCceE--------EecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001362          486 APVYSLCPHAKENIHF-IFSISVDGKIKAWLYDSLGARV--------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1092)
Q Consensus       486 ~~v~~~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~--------~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1092)
                      ...+.++|++  +++. .++-+..+.|..|+++......        ...........+++..+|+..++...    .+.
T Consensus       177 ~~pnGia~s~--dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~----~g~  250 (319)
T d2dg1a1         177 SVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG----QGR  250 (319)
T ss_dssp             SSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----TTE
T ss_pred             ceeeeeeecc--ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC----CCE
Confidence            3456788854  5554 4666778899999987543211        11112234568999999997776643    567


Q ss_pred             EEEEeCCCCeEEEEEeecc---ccCCceEEEEEcCCCCEEEEEeC
Q 001362          557 LVEWNESEGAIKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGD  598 (1092)
Q Consensus       557 i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~s~  598 (1092)
                      |.++|. .|+.+..+....   .+...+.+++|.+.+..+++.+.
T Consensus       251 V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         251 VLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            999996 688887776432   11235779999998887777653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.53  E-value=6.8e-06  Score=84.54  Aligned_cols=236  Identities=11%  Similarity=0.034  Sum_probs=128.2

Q ss_pred             eecCC--CceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC-C
Q 001362          341 DFHPV--QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-K  417 (1092)
Q Consensus       341 ~~spd--g~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~-d  417 (1092)
                      ..|||  |++++.+.  ++.|.+.|+.+++...                    ++.+.+.+...+|||||++||.... +
T Consensus         5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~   62 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG   62 (281)
T ss_dssp             CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred             ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence            46899  99766664  3678888999887654                    5667788999999999999997642 1


Q ss_pred             -----CEEEEEEccCCCcccceE---EEcccccceeEEEEecCCCcEEEEEEeC------CCcEEEEECCCCceeEEEec
Q 001362          418 -----HIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEG  483 (1092)
Q Consensus       418 -----~~i~iwd~~~~~~~~~~~---~~~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~~~~~~~~~~~  483 (1092)
                           ..|.+++..+++..+...   ............+|+|||+  .++....      ...+...+...+.....   
T Consensus        63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  137 (281)
T d1k32a2          63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPL---  137 (281)
T ss_dssp             TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEEC---
T ss_pred             CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC--EEEEEEccCCCccceeeeeecCCCceeEEe---
Confidence                 247777777775432100   0112223456789999999  4444321      12345555554443221   


Q ss_pred             CCcCeEEEeecccCCccEEEEEecCC-----------eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001362          484 HGAPVYSLCPHAKENIHFIFSISVDG-----------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      +........+  ..++..++....+.           .......... ................++++  .++... +..
T Consensus       138 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~  211 (281)
T d1k32a2         138 NLGPATHILF--ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG-AFKKIVDMSTHVSSPVIVGH--RIYFIT-DID  211 (281)
T ss_dssp             CSCSCSEEEE--ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT-EEEEEECCSSCCEEEEEETT--EEEEEE-CTT
T ss_pred             cCCccceeee--cCCCeEEEeeccccceeeeeccCCcceeeeecccc-ceeeccCCccccceeeeecc--ccceec-ccc
Confidence            1122212211  11222222221111           0111111111 11122222233344445544  333333 234


Q ss_pred             CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001362          553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT  615 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~  615 (1092)
                      +...|+++|+.+++..+......   ..  ...|+|||+.|+.. .++.|+++|+.+++....
T Consensus       212 ~~~~l~~~d~~g~~~~~lt~~~~---~~--~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         212 GFGQIYSTDLDGKDLRKHTSFTD---YY--PRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             SSCEEEEEETTSCSCEECCCCCS---SC--EEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred             cccceEEEeCCCCceEEeecCCC---cc--cccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence            46679999998776544322211   22  34689999988764 467899999988876543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.30  E-value=0.00035  Score=71.52  Aligned_cols=216  Identities=9%  Similarity=0.021  Sum_probs=141.8

Q ss_pred             EEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001362          446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY  525 (1092)
Q Consensus       446 ~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  525 (1092)
                      ...|.+.... ++.+--..+.|..||.++++.. .+. ....+.++++.  .++.++++ +.+ .+.++|..+++.....
T Consensus        22 gp~wd~~~~~-l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~--~dg~l~va-~~~-gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          22 GPTFDPASGT-AWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKI--SDSKQLIA-SDD-GLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEETTTTE-EEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEE--ETTEEEEE-ETT-EEEEEETTTCCEEEEE
T ss_pred             CCeEECCCCE-EEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEe--cCCCEEEE-EeC-ccEEeecccceeeEEe
Confidence            3567775553 3444446788999998888643 332 34567777764  45555554 454 5788998887655433


Q ss_pred             cC----CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCC
Q 001362          526 DA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH  600 (1092)
Q Consensus       526 ~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~s~dg  600 (1092)
                      ..    ....+..+.+.|+|+..++..........-.+|....++........    .....++|+++++.++. -+..+
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~----~~~Ng~~~s~d~~~l~~~dt~~~  170 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI----SIPNSICFSPDGTTGYFVDTKVN  170 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE----SSEEEEEECTTSCEEEEEETTTC
T ss_pred             eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc----CCcceeeecCCCceEEEeecccc
Confidence            22    12357889999999987765443322333455655667665555443    35678999999987655 45678


Q ss_pred             cEEEEECCC------CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeec
Q 001362          601 VIKIWDMNK------VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN  673 (1092)
Q Consensus       601 ~i~iwd~~~------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~  673 (1092)
                      .|+.+++..      ++................+++..+|++.++....+.|..|+. +++.+..+......+++++|.
T Consensus       171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred             eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEe
Confidence            888887643      122222222222234578999999998888888899999994 677888887777778888886

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.24  E-value=3.8e-05  Score=78.71  Aligned_cols=229  Identities=12%  Similarity=0.090  Sum_probs=124.8

Q ss_pred             cccccCCccccCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCC-----cEEEEecCCCCeeEEeeeeeeeccccc
Q 001362          310 MFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG-----DTGLWDVNSGQKLFIRNFKVWDIGACS  384 (1092)
Q Consensus       310 ~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~-----~v~iwd~~~~~~~~~~~~~~~d~~~~~  384 (1092)
                      .|.+.+..++.++.....+.|..+.+.+...+|||||++++.+...++     .|.+++..+++......          
T Consensus        16 ~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~----------   85 (281)
T d1k32a2          16 IFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY----------   85 (281)
T ss_dssp             EEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC----------
T ss_pred             EEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeee----------
Confidence            355555667777777777888888888999999999997665554332     47778888776553100          


Q ss_pred             ceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC------CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEE
Q 001362          385 MLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV  458 (1092)
Q Consensus       385 ~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l  458 (1092)
                         ...............+|+|||+.|+.....      ..+...+..++...      ..+...... .+.+++.. .+
T Consensus        86 ---~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~-~~  154 (281)
T d1k32a2          86 ---FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV------PLNLGPATH-ILFADGRR-VI  154 (281)
T ss_dssp             ---CCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE------ECCSCSCSE-EEEETTEE-EE
T ss_pred             ---cCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE------EecCCccce-eeecCCCe-EE
Confidence               000011233456778999999999986432      23555565554311      122333333 34455553 33


Q ss_pred             EEEeCCC-----------cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCC--eEEEEEcCCCCceEEe
Q 001362          459 ITCGDDK-----------TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDY  525 (1092)
Q Consensus       459 ~s~~~d~-----------~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~  525 (1092)
                      +....+.           ...+.....+...... .+........+  .++ .++.....++  .|.++|++........
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~lt  230 (281)
T d1k32a2         155 GRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVI--VGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT  230 (281)
T ss_dssp             EESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEE--ETT-EEEEEECTTSSCEEEEEETTSCSCEECC
T ss_pred             EeeccccceeeeeccCCcceeeeeccccceeecc-CCccccceeee--ecc-ccceecccccccceEEEeCCCCceEEee
Confidence            3332221           1122222222222222 22222222222  222 2333333443  4666677766655433


Q ss_pred             cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001362          526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT  570 (1092)
Q Consensus       526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  570 (1092)
                      ......  ...|+|||+.|+...     ++.|+++|+.+++..+.
T Consensus       231 ~~~~~~--~~~~SpDG~~I~f~~-----~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         231 SFTDYY--PRHLNTDGRRILFSK-----GGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             CCCSSC--EEEEEESSSCEEEEE-----TTEEEEECTTTCCEEEC
T ss_pred             cCCCcc--cccCcCCCCEEEEEe-----CCEEEEEECCCCCEEEe
Confidence            322223  346899999988754     34599999998876544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.20  E-value=0.00043  Score=70.81  Aligned_cols=223  Identities=14%  Similarity=0.062  Sum_probs=146.0

Q ss_pred             eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001362          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  417 (1092)
Q Consensus       338 ~~v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d  417 (1092)
                      -+..|++....|..+--..+.|.-||..+++...      |.               ....+.++++.++|.++++ +.+
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~~---------------~~~~~~~i~~~~dg~l~va-~~~   78 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------HA---------------LPFMGSALAKISDSKQLIA-SDD   78 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------EE---------------CSSCEEEEEEEETTEEEEE-ETT
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------EE---------------CCCCcEEEEEecCCCEEEE-EeC
Confidence            3567887555566666667899999999886432      11               2357889999999977765 455


Q ss_pred             CEEEEEEccCCCcccceEEEcc--cccceeEEEEecCCCcEEEEEEeC----CCcEEEEECCCCceeEEEecCCcCeEEE
Q 001362          418 HIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       418 ~~i~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~l~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~  491 (1092)
                      | +.++|..+++... ......  ....++.+.+.|+|+  +.++...    .+.-.+|.+..++....+.. -..-+.+
T Consensus        79 g-l~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~  153 (295)
T d2ghsa1          79 G-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSI  153 (295)
T ss_dssp             E-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEE
T ss_pred             c-cEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEeec-cCCccee
Confidence            4 8999999886322 111111  123688999999998  4444322    23456777677765544433 3345677


Q ss_pred             eecccCCcc-EEEEEecCCeEEEEEcCCCCc------eE--EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001362          492 CPHAKENIH-FIFSISVDGKIKAWLYDSLGA------RV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       492 ~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~------~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      ++++  ++. ++++-+..+.|..++++....      ..  ...........+++..+|+..++...    .+.|..||.
T Consensus       154 ~~s~--d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~----~g~V~~~dp  227 (295)
T d2ghsa1         154 CFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDRYDT  227 (295)
T ss_dssp             EECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEEECT
T ss_pred             eecC--CCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC----CCceEEecC
Confidence            7754  444 556667788899998754321      11  22334556788999999987776543    446999996


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEe
Q 001362          563 SEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG  597 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~s  597 (1092)
                       .|+.+..+.-..   ..+++++|. ++.+.|++.+
T Consensus       228 -~G~~~~~i~lP~---~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         228 -DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             -TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEE
T ss_pred             -CCcEeeEecCCC---CceEEEEEeCCCCCEEEEEE
Confidence             588888887655   568999996 6777776644

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.89  E-value=0.0082  Score=67.14  Aligned_cols=201  Identities=11%  Similarity=-0.002  Sum_probs=118.7

Q ss_pred             CCCcEEEEEEeCCCcEEEEEC-CCCceeEEEecCCc----Ce-------EEEeecccCCccEEEEEecCCeEEEEEcCCC
Q 001362          452 PCKQISVITCGDDKTIKVWDA-VTGSRTYSFEGHGA----PV-------YSLCPHAKENIHFIFSISVDGKIKAWLYDSL  519 (1092)
Q Consensus       452 d~~~l~l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~----~v-------~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  519 (1092)
                      +|.  ++++.+.++.|...|. ++|+.+.++.....    ..       ..+++.    +..++.++.||.+.-.|.+++
T Consensus        62 ~g~--vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~~~~g~l~alda~tG  135 (571)
T d2ad6a1          62 GDM--MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG----AGQIVKKQANGHLLALDAKTG  135 (571)
T ss_dssp             TTE--EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTC
T ss_pred             CCE--EEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee----CCeEEEEeCCCcEEeeehhhh
Confidence            454  3343334678888887 47999887742111    00       112221    246788899999999999999


Q ss_pred             CceEEecCCCC----ceEEEEEccCCCEEEEEecC--CCCceeEEEEeCCCCeEEEEEeeccc-----------------
Q 001362          520 GARVDYDAPGL----GCTRMAYSANGRRLFSCGTS--KEGESFLVEWNESEGAIKRTYQGLQL-----------------  576 (1092)
Q Consensus       520 ~~~~~~~~~~~----~i~~~~~s~dg~~l~~~~~~--~~~~~~i~iwd~~~~~~~~~~~~~~~-----------------  576 (1092)
                      +..........    .+++--.-.++..++ +...  ....+.|+-+|..+|+.+-.+.....                 
T Consensus       136 ~~~w~~~~~~~~~~~~~t~~p~v~~~~viv-g~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~  214 (571)
T d2ad6a1         136 KINWEVEVCDPKVGSTLTQAPFVAKDTVLM-GCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY  214 (571)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEE-ECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred             hhhccccccccccccceeecCeEeCCeEEE-eeccccccccCcEEEEECCCCcEEEEEeccCCccccccccccccccccc
Confidence            87765433211    111111122344333 3321  11356799999999999877653210                 


Q ss_pred             -----------------cCCce-EEEEEcCCCCEEEEEeC----------------CCcEEEEECCCCceEEEEeCCCCC
Q 001362          577 -----------------QHNSV-SVVHFDTAKDQILAAGD----------------DHVIKIWDMNKVQLLTTIDAGGGL  622 (1092)
Q Consensus       577 -----------------~~~~v-~~~~~~p~~~~l~~~s~----------------dg~i~iwd~~~~~~~~~~~~~~~~  622 (1092)
                                       ....+ ...++.++...++.+..                ...+.-.|.++|+.+...+...+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D  294 (571)
T d2ad6a1         215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD  294 (571)
T ss_dssp             CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred             CcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcc
Confidence                             00111 23466777777766543                345778899999999877753221


Q ss_pred             -------CCCceEEEccCCC---EEEEEeCCCeEEEEECCCCceeee
Q 001362          623 -------PENPRICFNKNGT---LLAVIANENRIKILETPESNSVDA  659 (1092)
Q Consensus       623 -------~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~  659 (1092)
                             ..........+++   .++.++.+|.+.++|..+++.+..
T Consensus       295 ~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         295 EWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             SSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence                   1111222233444   467788899999999999987754

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.88  E-value=0.003  Score=71.05  Aligned_cols=373  Identities=12%  Similarity=0.088  Sum_probs=191.5

Q ss_pred             EEEEeCCCcEEEEECCCCceeEEEecCCc----------Ce-EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001362          458 VITCGDDKTIKVWDAVTGSRTYSFEGHGA----------PV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD  526 (1092)
Q Consensus       458 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  526 (1092)
                      ++.++.++.|.-+|.++|+.+.++.....          .+ ..+.+    ....++.++.|+.+.-.|..+++......
T Consensus        80 vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~v~~~t~~g~l~alda~tG~~~W~~~  155 (573)
T d1kb0a2          80 MYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQN  155 (573)
T ss_dssp             EEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceE----ECCcEEEEecccceeeeccccccceeccc
Confidence            56677788999999999999988752211          01 01111    12367788889999888988888776543


Q ss_pred             CCCC---ce--EEEEEccCCCEEEEEec--CCCCceeEEEEeCCCCeEEEEEeecccc----------------------
Q 001362          527 APGL---GC--TRMAYSANGRRLFSCGT--SKEGESFLVEWNESEGAIKRTYQGLQLQ----------------------  577 (1092)
Q Consensus       527 ~~~~---~i--~~~~~s~dg~~l~~~~~--~~~~~~~i~iwd~~~~~~~~~~~~~~~~----------------------  577 (1092)
                      ....   .+  +....-.++ .++++..  .....+.|+-+|..+|+.+-.+......                      
T Consensus       156 ~~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~  234 (573)
T d1kb0a2         156 TFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK  234 (573)
T ss_dssp             TTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred             CccCCcceEEeecceEEEec-cEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence            2211   11  111111133 3444332  1223567999999999998776432100                      


Q ss_pred             ------CCce-EEEEEcCCCCEEEEEeC-------------------CCcEEEEECCCCceEEEEeCCCCC-------CC
Q 001362          578 ------HNSV-SVVHFDTAKDQILAAGD-------------------DHVIKIWDMNKVQLLTTIDAGGGL-------PE  624 (1092)
Q Consensus       578 ------~~~v-~~~~~~p~~~~l~~~s~-------------------dg~i~iwd~~~~~~~~~~~~~~~~-------~~  624 (1092)
                            ...+ ...++.++...++.+..                   ...|.-.|.++++.....+...+.       ..
T Consensus       235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~  314 (573)
T d1kb0a2         235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP  314 (573)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence                  0111 13456677666665431                   124667788888887766542211       11


Q ss_pred             CceEEEccCC---CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001362          625 NPRICFNKNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1092)
Q Consensus       625 v~~v~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1092)
                      ........++   ..++.++.+|.+.++|..+++.+............ .+..                      .+..+
T Consensus       315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~-~~~~----------------------~~~~~  371 (573)
T d1kb0a2         315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS-GYDK----------------------HGKPI  371 (573)
T ss_dssp             CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE-EECT----------------------TSCEE
T ss_pred             eeecceecCCCceeeeeeccccceeEEecccccccccccccccccccc-cccc----------------------cccee
Confidence            1112222333   35777888999999999999877654422111100 0000                      00000


Q ss_pred             eeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCc
Q 001362          702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  781 (1092)
Q Consensus       702 ~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~  781 (1092)
                                 +.... ..........+.......-...+++|+...++....+....++.............       
T Consensus       372 -----------~~~~~-~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~-------  432 (573)
T d1kb0a2         372 -----------GIAAA-RDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPG-------  432 (573)
T ss_dssp             -----------ECGGG-GCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTT-------
T ss_pred             -----------eeeec-cccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCC-------
Confidence                       00000 00000000111100111112457888888888777776555544322111000000       


Q ss_pred             cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCe-EEEEEcCCCCCEEE
Q 001362          782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIA  860 (1092)
Q Consensus       782 ~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~d~~~la  860 (1092)
                        .+..+.            .....  .+ +++.-.....-|.+.-||+.+++.+.+........ ..++.   .+.+|+
T Consensus       433 --~~~~g~------------~~~~~--~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lst---agglVF  492 (573)
T d1kb0a2         433 --KPQSGT------------GWNTA--KF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT---AGNVVF  492 (573)
T ss_dssp             --STTGGG------------TCCCC--EE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE---TTTEEE
T ss_pred             --cccccc------------ccccc--cc-cccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCceEEE---cCCEEE
Confidence              000000            00000  00 00000000012578889999999887765432211 22333   456888


Q ss_pred             EEeCCCcEEEEEcCCceeeEeecc----ccCCeEEEEEcCCCCE
Q 001362          861 IGMDDSTILIYNARSSEVISKLEG----HSKRVTGLVFSDALNI  900 (1092)
Q Consensus       861 sg~~dg~v~iwd~~~~~~~~~l~~----h~~~V~~l~~spdg~~  900 (1092)
                      +|+.||.++.+|.++|+.+.++.-    +..+   +.|..||+.
T Consensus       493 ~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~GkQ  533 (573)
T d1kb0a2         493 QGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGRQ  533 (573)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEE
T ss_pred             EECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEE
Confidence            899999999999999999988763    2233   445568864

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=0.016  Score=57.20  Aligned_cols=242  Identities=11%  Similarity=0.002  Sum_probs=149.8

Q ss_pred             CCEEEEEeCCCEEEEEEccCCCcc--cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001362          408 GSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  485 (1092)
                      |.+|+.+.. +.|+-.+++.....  .....+..+...+..++|.+..+. ++.+-..++.|+..++..+.....+....
T Consensus         1 ~~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~   78 (263)
T d1npea_           1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL   78 (263)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred             CCEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE-EEEEECCCCeEEEEEcccCCcEEEEEecc
Confidence            345555433 35777777654321  122234445556888999988775 44555667889998987665554454444


Q ss_pred             cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001362          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      ..+..+++.... +.+.++-...+.|.+.+++.................+++.|...+++...... ....|..-++...
T Consensus        79 ~~p~~iAvD~~~-~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~-~~~~I~r~~~dG~  156 (263)
T d1npea_          79 GSPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT  156 (263)
T ss_dssp             CCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC
T ss_pred             ccccEEEEeccC-CeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC-CCcEEEEecCCCC
Confidence            567888885433 34445666678999999987766554444445788999999888877654321 2334555565543


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001362          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      ........ .  ......+++.+.++.|+.+ ...+.|...++........+...   .....+++. ++.+..+-...+
T Consensus       157 ~~~~i~~~-~--~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~---~~P~~lav~-~~~lYwtd~~~~  229 (263)
T d1npea_         157 NRRILAQD-N--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY-GKNLYYTDWKTN  229 (263)
T ss_dssp             CCEEEECT-T--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE-TTEEEEEETTTT
T ss_pred             Cceeeeee-c--ccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCC---CCcEEEEEE-CCEEEEEECCCC
Confidence            33222222 1  2466889999888888666 46778999998766554444332   223567765 344444444678


Q ss_pred             eEEEEECCCCceeeec
Q 001362          645 RIKILETPESNSVDAA  660 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~  660 (1092)
                      .|...+..+++.....
T Consensus       230 ~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         230 SVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCccceEE
Confidence            8888888877665543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.86  E-value=0.0014  Score=70.15  Aligned_cols=285  Identities=9%  Similarity=-0.029  Sum_probs=143.1

Q ss_pred             CceEEeecCCCceEEEEEcCC-----C------cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001362          336 SPMSMDFHPVQHTLLLVGTNV-----G------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d-----~------~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      .+...+...+|+ +++.|+.+     +      .+.+||..+++-...                ......|.......++
T Consensus        21 ~~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~----------------~~~~~~~~~~~~~~~~   83 (387)
T d1k3ia3          21 PAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR----------------TVTVTKHDMFCPGISM   83 (387)
T ss_dssp             CSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC----------------EEEECSCCCSSCEEEE
T ss_pred             ccEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeec----------------CCCCCCcccceeEEEE
Confidence            444555567887 66666542     1      367888887753321                1112234334456788


Q ss_pred             CCCCCEEEEEeCC-CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC------CcEEEEECCCCce
Q 001362          405 SPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVTGSR  477 (1092)
Q Consensus       405 spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~~~~~  477 (1092)
                      .+||++++.|+.+ ..+.+||..++.-.. ...+.. ...-..++..+||+  +++.|+.+      ..+.+||..+.+-
T Consensus        84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~-~r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3          84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQV-ARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             CTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSS-CCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ecCCcEEEeecCCCcceeEecCccCcccc-cccccc-cccccceeeecCCc--eeeeccccccccccceeeeecCCCCce
Confidence            9999999998655 579999998764221 111111 11234567788998  67777643      3689999888754


Q ss_pred             eEEEec---------CCcCe----EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--------CCCceEEEE
Q 001362          478 TYSFEG---------HGAPV----YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--------PGLGCTRMA  536 (1092)
Q Consensus       478 ~~~~~~---------~~~~v----~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------~~~~i~~~~  536 (1092)
                      ...-..         +...+    ....+ ...++..++.+...+.+.+++..+.........        ....-.++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (387)
T d1k3ia3         160 TSLPNAKVNPMLTADKQGLYRSDNHAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM  238 (387)
T ss_dssp             EEETTSCSGGGCCCCTTGGGTTTCSCCEE-ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred             eecCCCcccccccccccceeeccceeEEE-EeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence            321100         00000    00001 122455666666666666666554432221100        000112222


Q ss_pred             E-ccCCCEEEEEecCCCC----ceeEEEEeC---CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC---------
Q 001362          537 Y-SANGRRLFSCGTSKEG----ESFLVEWNE---SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------  599 (1092)
Q Consensus       537 ~-s~dg~~l~~~~~~~~~----~~~i~iwd~---~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~d---------  599 (1092)
                      + ..+++.++.++.....    .....+.+.   ..................-.+....++++.+++|+.+         
T Consensus       239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~  318 (387)
T d1k3ia3         239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST  318 (387)
T ss_dssp             EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred             eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence            2 3467777777643211    111222222   1111111111100001122345566888888887743         


Q ss_pred             --CcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001362          600 --HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       600 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                        .++.+||..+.+....-........-....+.+||+.++.|+.
T Consensus       319 ~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             EeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence              1478899888765433222111111123446789999999884

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.81  E-value=0.0083  Score=67.36  Aligned_cols=203  Identities=11%  Similarity=0.046  Sum_probs=119.4

Q ss_pred             EEEEEeCCCcEEEEEC-CCCceeEEEecCCc----C------e-EEEeeccc--CCccEEEEEecCCeEEEEEcCCCCce
Q 001362          457 SVITCGDDKTIKVWDA-VTGSRTYSFEGHGA----P------V-YSLCPHAK--ENIHFIFSISVDGKIKAWLYDSLGAR  522 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~----~------v-~~~~~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~  522 (1092)
                      ++++.+.++.+...|. ++|+.+.++.....    .      + +.+++...  ....+++.++.|+.|.-.|..+++..
T Consensus        65 ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~  144 (596)
T d1w6sa_          65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV  144 (596)
T ss_dssp             EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE
T ss_pred             EEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCcee
Confidence            3444555667777776 57888877642111    0      1 22333222  12347889999999999999999888


Q ss_pred             EEecCCCC----ceEEEEEccCCCEEEEEecC--CCCceeEEEEeCCCCeEEEEEeeccc--------------------
Q 001362          523 VDYDAPGL----GCTRMAYSANGRRLFSCGTS--KEGESFLVEWNESEGAIKRTYQGLQL--------------------  576 (1092)
Q Consensus       523 ~~~~~~~~----~i~~~~~s~dg~~l~~~~~~--~~~~~~i~iwd~~~~~~~~~~~~~~~--------------------  576 (1092)
                      ..+.....    .+++--.--+ ..++.+...  ....+.|+-+|..+|+++-.+.....                    
T Consensus       145 w~~~~~d~~~~~~~t~~P~v~~-~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~  223 (596)
T d1w6sa_         145 WKVENSDIKVGSTLTIAPYVVK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQK  223 (596)
T ss_dssp             EEEECCCGGGTCBCCSCCEEET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCT
T ss_pred             ccccccccccccccccCCcEEC-CeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccccc
Confidence            76643221    1111111113 334444321  12357899999999999877643210                    


Q ss_pred             --------------cCC-ceEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEeCCCCC---
Q 001362          577 --------------QHN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGL---  622 (1092)
Q Consensus       577 --------------~~~-~v~~~~~~p~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~---  622 (1092)
                                    ... .-..+++.+....++.+..+                ..+.-.|..+|+....++...+.   
T Consensus       224 ~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd  303 (596)
T d1w6sa_         224 GLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWD  303 (596)
T ss_dssp             THHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccC
Confidence                          001 11234667777777776432                34778899999998877643221   


Q ss_pred             ----CCCceEEE-ccCC---CEEEEEeCCCeEEEEECCCCceeeec
Q 001362          623 ----PENPRICF-NKNG---TLLAVIANENRIKILETPESNSVDAA  660 (1092)
Q Consensus       623 ----~~v~~v~~-s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~  660 (1092)
                          .....+.. ..+|   +.++....+|.+.++|..+++.+...
T Consensus       304 ~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~  349 (596)
T d1w6sa_         304 YAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (596)
T ss_dssp             CCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence                11111111 2244   36777888999999999999877543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.78  E-value=0.028  Score=62.85  Aligned_cols=62  Identities=13%  Similarity=0.154  Sum_probs=45.4

Q ss_pred             CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001362          957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus       957 ~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
                      |.|.-||..+|+.+-+...  ..++.+-.++..|.+++.|+.||.++-+|..+|+.+.++....
T Consensus       453 G~l~A~D~~TG~~~W~~~~--~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~  514 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME--RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS  514 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ceEEEEeCCCCceecccCC--CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCC
Confidence            5677888888887655332  2223333345567888899999999999999999999987444

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.024  Score=56.04  Aligned_cols=239  Identities=9%  Similarity=-0.040  Sum_probs=142.9

Q ss_pred             EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc----eeEEEecCC
Q 001362          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS----RTYSFEGHG  485 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~  485 (1092)
                      +|+.+... .|+..++.+....    .+......+.+++|.+..+. +..+-...+.|.--++....    ....+....
T Consensus         3 fLl~s~~~-~I~~~~l~~~~~~----~~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~   76 (266)
T d1ijqa1           3 YLFFTNRH-EVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI   76 (266)
T ss_dssp             EEEEECBS-SEEEEETTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECCC-eEEEEECCCCcce----eeeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence            44444433 3777888765422    23234456778999988775 34444556677766664321    112222233


Q ss_pred             cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001362          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      ..+..+++.+.. +.+.++-...++|.+.+++.................+++.|...+|+.....  ....|...++...
T Consensus        77 ~~p~glAvD~~~-~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~--~~~~I~r~~~dGs  153 (266)
T d1ijqa1          77 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV  153 (266)
T ss_dssp             SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred             CCcceEEEeecc-ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC--CCcceeEeccCCC
Confidence            456677775443 3455566677889999998776666555555677889999977777665422  2345777776544


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001362          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      .........   ......+++.+.++.|+.+ ...+.|...++....................+++. ++.+..+-..++
T Consensus       154 ~~~~l~~~~---~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~  229 (266)
T d1ijqa1         154 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (266)
T ss_dssp             CEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             ceecccccc---cceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCC
Confidence            433333222   2457889999988877776 45678888898765554444433333334466665 344444444667


Q ss_pred             eEEEEECCCCceeeecc
Q 001362          645 RIKILETPESNSVDAAG  661 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~  661 (1092)
                      .|...+..++.....+.
T Consensus       230 ~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         230 AIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             EEEEEETTTCCCCEEEE
T ss_pred             eEEEEECCCCcceEEEE
Confidence            88888877765554444

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.75  E-value=0.013  Score=65.34  Aligned_cols=194  Identities=13%  Similarity=0.120  Sum_probs=119.9

Q ss_pred             CeEEEEEcCCceeeEEecCCC------------------------------CCe-EEEEEcCCCCCEEEEEeC-------
Q 001362          823 GVISLYIVMTFKTILTIMPPS------------------------------PTA-TSLAFNPHDNNVIAIGMD-------  864 (1092)
Q Consensus       823 g~i~iwd~~~~~~~~~~~~~~------------------------------~~i-~~l~~s~~d~~~lasg~~-------  864 (1092)
                      |.|.-+|.++|+.+-++..-.                              ..+ ..+++.+ ...++..+..       
T Consensus       178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~-~~~l~y~~tgn~~~~~~  256 (560)
T d1kv9a2         178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNR  256 (560)
T ss_dssp             CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCH
T ss_pred             ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCccccccccc-ccCeeeecCCCCccccc
Confidence            679999999999988764210                              011 2256666 5555554332       


Q ss_pred             ------------CCcEEEEEcCCceeeEeeccccCCeE---------EEEEcCCC---CEEEEEeCCCcEEEEEcCCCce
Q 001362          865 ------------DSTILIYNARSSEVISKLEGHSKRVT---------GLVFSDAL---NILVSSGGDAQIFVWDVDGWGI  920 (1092)
Q Consensus       865 ------------dg~v~iwd~~~~~~~~~l~~h~~~V~---------~l~~spdg---~~l~s~s~Dg~i~iwd~~~~~~  920 (1092)
                                  ...|.-.|+++|+.+..++.....+.         -+....++   +.++.++.+|.+.++|-.+++.
T Consensus       257 ~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~  336 (560)
T d1kv9a2         257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (560)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             ccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence                        23577778999998776654222221         12222244   3677788999999999998875


Q ss_pred             eeeeeeecC-----------------------------CCCcCCCCCceEEEEecCCCEEEE-Ee---------------
Q 001362          921 QTCRSLQTP-----------------------------DGVMTLAPSETHIQFHKDQTRFLL-VH---------------  955 (1092)
Q Consensus       921 ~~~~~~~~~-----------------------------~~~~~~~~~v~~l~~s~dg~~la~-~~---------------  955 (1092)
                      .........                             .+... ...-...+++|+..++.+ ..               
T Consensus       337 i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~G-g~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~  415 (560)
T d1kv9a2         337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG-AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT  415 (560)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC-SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred             cccccccccccccccChhhccccccccccccccceeeeecccc-ccccccccccCCCCeeecccccccceeecccccccc
Confidence            432211100                             00000 001135678888887776 22               


Q ss_pred             ---------------------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEE
Q 001362          956 ---------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1092)
Q Consensus       956 ---------------------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~ 1014 (1092)
                                           .+.+.-||+.+|+.+-+...+  .+..+-.++-.|.++++|+.||.++-+|..+|+.+.
T Consensus       416 ~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~--~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW  493 (560)
T d1kv9a2         416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW  493 (560)
T ss_dssp             CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC--CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeE
Confidence                                 145778899999887664332  222222345567788899999999999999999999


Q ss_pred             eecccc
Q 001362         1015 RILSTA 1020 (1092)
Q Consensus      1015 ~~~~~~ 1020 (1092)
                      ++....
T Consensus       494 ~~~l~~  499 (560)
T d1kv9a2         494 QFEAQS  499 (560)
T ss_dssp             EEECSS
T ss_pred             EEECCC
Confidence            988443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.72  E-value=0.011  Score=65.92  Aligned_cols=81  Identities=16%  Similarity=0.190  Sum_probs=51.9

Q ss_pred             CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCe-EEEEEcCCCC-E
Q 001362          823 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-I  900 (1092)
Q Consensus       823 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~-~  900 (1092)
                      |.+.-||+.+++.+.+...... ...-.++- .+.++++|+.||.++-+|..+|+.+.++.-..+.. .-+.+..||+ +
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~-~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCC-CCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            4578899999998876543221 11111222 35588889999999999999999998876422111 1145556885 5


Q ss_pred             EEEEe
Q 001362          901 LVSSG  905 (1092)
Q Consensus       901 l~s~s  905 (1092)
                      ++..+
T Consensus       516 v~v~a  520 (560)
T d1kv9a2         516 VAIMA  520 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=0.029  Score=55.30  Aligned_cols=223  Identities=13%  Similarity=0.059  Sum_probs=139.0

Q ss_pred             CCCcEEEEEECCCCCEEEEEe-CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC
Q 001362          395 PGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  473 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  473 (1092)
                      +...+..++|.+..+.|.... .++.|+..++.++....   .+......+..+++..-+.. +.++-...+.|.+.++.
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~d  109 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMD  109 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEecC
Confidence            445688899998888777664 56778888887654322   23233346788999876664 34455667899999987


Q ss_pred             CCceeEEEecCCcCeEEEeecccCCccEEEEEecCC--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001362          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      .......+.........+++.|. .+.++.+-...+  .|..-+++...........-.....+++.+.++.|+.+..  
T Consensus       110 g~~~~~l~~~~l~~p~~l~vdp~-~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~--  186 (263)
T d1npea_         110 GTQRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--  186 (263)
T ss_dssp             SCSCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET--
T ss_pred             CceEEEEecccccCCcEEEEecc-cCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC--
Confidence            66543333333456788888664 333444433323  3444455555444444434446688999998888877642  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001362          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                       +.+.|...+.........+.+..    ....+++.  +.+|+... ..+.|...|..+++.+..+..... .....++.
T Consensus       187 -~~~~I~~~~~~g~~~~~v~~~~~----~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi~v  258 (263)
T d1npea_         187 -GTHRAECLNPAQPGRRKVLEGLQ----YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITI  258 (263)
T ss_dssp             -TTTEEEEEETTEEEEEEEEECCC----SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEE
T ss_pred             -CCCEEEEEECCCCCeEEEECCCC----CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC-CCcceEEE
Confidence             35678888887665544444433    34567765  45565554 678899999999988776643332 23445554


Q ss_pred             cc
Q 001362          631 NK  632 (1092)
Q Consensus       631 s~  632 (1092)
                      .+
T Consensus       259 ~~  260 (263)
T d1npea_         259 AL  260 (263)
T ss_dssp             EC
T ss_pred             eC
Confidence            43

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.69  E-value=0.0045  Score=63.64  Aligned_cols=198  Identities=11%  Similarity=0.114  Sum_probs=125.4

Q ss_pred             EEEEec---CCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCcCeEEEeecccCCccEEEEEecCC------------
Q 001362          446 DLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDG------------  509 (1092)
Q Consensus       446 ~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg------------  509 (1092)
                      .+.|..   ||++ +++.-..+.+|-+-|+++.++.+.+.. ....+..+.....++..+++.++.+.            
T Consensus        89 ~~S~TdGtyDGry-lFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          89 HMSFTEGKYDGRF-LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccccCCccceeE-EEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            455544   7886 566777889999999999998775543 23445556665566667888776633            


Q ss_pred             ------eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC-----------CceeEEEE------------
Q 001362          510 ------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-----------GESFLVEW------------  560 (1092)
Q Consensus       510 ------~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~-----------~~~~i~iw------------  560 (1092)
                            .+.++|..+.+........ .....+.+++||+++++.+.+.+           ....+.++            
T Consensus       168 ~~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             hhhcceEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence                  3567788776665544432 24557899999999998764321           11223333            


Q ss_pred             -----------eCCCC---eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc------------eE
Q 001362          561 -----------NESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ------------LL  613 (1092)
Q Consensus       561 -----------d~~~~---~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s-~dg~i~iwd~~~~~------------~~  613 (1092)
                                 |....   ..++.+...    .....+.++|||+++++++ .+.++.++|++.-.            ..
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIPVp----KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~  322 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIPIA----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  322 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEEEE----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred             CcEEeCCceeecccccCCcceeEEEecC----CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence                       32211   111122221    3456788999999998865 78999999986411            11


Q ss_pred             EEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001362          614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      .....  + ..-...+|+.+|.-..+..-|..|.-|++.
T Consensus       323 ~e~el--g-lgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         323 AEPEL--G-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             ECCBC--C-SCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             eeccc--C-cCccccccCCCceEEEEeeccceEEEEecc
Confidence            11111  1 123567888888766666789999999985

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.68  E-value=0.0058  Score=65.09  Aligned_cols=125  Identities=10%  Similarity=0.163  Sum_probs=79.2

Q ss_pred             ceEEEEEccCCCEEEEEecCCC-------CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-CcE
Q 001362          531 GCTRMAYSANGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-HVI  602 (1092)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~d-g~i  602 (1092)
                      ++...+...+|+.++.++...+       ....+.+||+.+++..........+.......++.+++..++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            3344455668888887774321       12247799999886543322222111233456788999888887654 689


Q ss_pred             EEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC------CeEEEEECCCCce
Q 001362          603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE------NRIKILETPESNS  656 (1092)
Q Consensus       603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iw~~~~~~~  656 (1092)
                      .+||..+......-..... ..-..++..+||++++.++.+      ..+.+||..+.+.
T Consensus       101 ~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             eEecCccCccccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            9999988776543322222 223467778899999998753      4688999887754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.67  E-value=0.015  Score=62.58  Aligned_cols=249  Identities=12%  Similarity=0.063  Sum_probs=136.4

Q ss_pred             CceEEeecCCCceEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001362          336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~----~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      .+..+++||||++++.+-+.+|    .+++.|+.+|+.+.. .+                 .  ......++|++|++.|
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~i-----------------~--~~~~~~~~W~~D~~~~  185 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VL-----------------E--RVKFSCMAWTHDGKGM  185 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EE-----------------E--EECSCCEEECTTSSEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-cc-----------------c--cccccceEEcCCCCEE
Confidence            3445678999997666655444    599999999986642 11                 1  0112468999999988


Q ss_pred             EEEeCC----------------CEEEEEEccCCCcccceEEEcccc--cceeEEEEecCCCcEEEEEEe-CCCcEEEE--
Q 001362          412 GVAYSK----------------HIVQLYAYHGGSDARQQLEIDAHV--GNVNDLAFSAPCKQISVITCG-DDKTIKVW--  470 (1092)
Q Consensus       412 as~~~d----------------~~i~iwd~~~~~~~~~~~~~~~h~--~~v~~~~~s~d~~~l~l~s~~-~d~~i~vw--  470 (1092)
                      .....+                ..|..|.+.+...-. ...+....  ..+..+..++|++++++.+.. .+....+|  
T Consensus       186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~  264 (430)
T d1qfma1         186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC  264 (430)
T ss_dssp             EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred             EEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence            765432                257777777654322 11233333  346677889999963333332 23344444  


Q ss_pred             ECCCCc--------eeEEEecCCcCeEEEeecccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCCCCceEEEE
Q 001362          471 DAVTGS--------RTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMA  536 (1092)
Q Consensus       471 d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~  536 (1092)
                      |+....        ....+.........+..   .++.+++...   .++.|...++.....   ...+..+...+..-.
T Consensus       265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~  341 (430)
T d1qfma1         265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN---EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV  341 (430)
T ss_dssp             EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE---ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE
T ss_pred             eCCCcccccccccceeEeecccccceEEEec---CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE
Confidence            433221        11222222222222211   1222333332   235666667665443   222333444454445


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCce
Q 001362          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL  612 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s----~dg~i~iwd~~~~~~  612 (1092)
                      ++..+.+|+..... ++...|++++..++..........   +.+..+...++...+...-    .-.+++-+|+.+++.
T Consensus       342 ~~~~~~~lvl~~~~-~~~~~l~v~~~~~~~~~~~~~~~~---~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         342 ACVRSNFLVLCYLH-DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEETTTEEEEEEEE-TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EEEECCEEEEEEEc-CCEeEEEEEECCCCcEEEecCCCC---ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            55556666655432 357789999999887765543333   5566555556655544322    336788889988754

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.62  E-value=0.033  Score=61.97  Aligned_cols=116  Identities=6%  Similarity=-0.107  Sum_probs=65.4

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceee
Q 001362          891 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL  970 (1092)
Q Consensus       891 ~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~  970 (1092)
                      ..+++|+..++.....+....+.......         ..+...   ....+...+..........|.|.-+|+.+|+.+
T Consensus       390 ~~a~dP~~~~~yv~~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~  457 (571)
T d2ad6a1         390 VDSYDPESRTLYAGLNHICMDWEPFMLPY---------RAGQFF---VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK  457 (571)
T ss_dssp             BCEEETTTTEEEEEEECEEEEEEECCCCC---------CTTSCC---CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE
T ss_pred             cceECCCCceEEEeccccccccccccccc---------cCCccc---cccceeeccccCCcccCCcccEEEeccCCCcee
Confidence            36788998888887776544333222100         000000   111222222211111112356888888888877


Q ss_pred             eeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001362          971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus       971 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
                      -+...+.  +..+-..+-.|.++++++.||.++-+|.++|+.+.++....
T Consensus       458 W~~~~~~--~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~  505 (571)
T d2ad6a1         458 WTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS  505 (571)
T ss_dssp             EEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             eEcCCCC--CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCC
Confidence            6543322  11111223356688889999999999999999998887433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.61  E-value=0.094  Score=58.44  Aligned_cols=382  Identities=11%  Similarity=0.053  Sum_probs=192.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCc--------Ce-EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001362          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--------PV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA  527 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--------~v-~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  527 (1092)
                      .++.++.++.|.-.|.++|+.+.++.....        .+ ..+++    .+..++.++.|+.+.-.|..+++.......
T Consensus        70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~----~~~~i~~~t~~~~l~alda~tG~~~W~~~~  145 (582)
T d1flga_          70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE----eCCceEEecCCCeEEEecccccceeeeecc
Confidence            466677889999999999999988742210        01 11122    124678889999999899998887654332


Q ss_pred             CCCc----e--EEEEEcc--CCCEEEEEecCC---CCceeEEEEeCCCCeEEEEEeeccc--------------------
Q 001362          528 PGLG----C--TRMAYSA--NGRRLFSCGTSK---EGESFLVEWNESEGAIKRTYQGLQL--------------------  576 (1092)
Q Consensus       528 ~~~~----i--~~~~~s~--dg~~l~~~~~~~---~~~~~i~iwd~~~~~~~~~~~~~~~--------------------  576 (1092)
                      ....    .  ....+.+  .+..++..+...   ...+.|.-+|..+|+.+-.+.....                    
T Consensus       146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~  225 (582)
T d1flga_         146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS  225 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred             cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence            1110    0  0011111  233333332211   2245688999999988776543220                    


Q ss_pred             -----------------cCCce-EEEEEcCCCCEEEEEeC------------------------CCcEEEEECCCCceEE
Q 001362          577 -----------------QHNSV-SVVHFDTAKDQILAAGD------------------------DHVIKIWDMNKVQLLT  614 (1092)
Q Consensus       577 -----------------~~~~v-~~~~~~p~~~~l~~~s~------------------------dg~i~iwd~~~~~~~~  614 (1092)
                                       ....+ ..+++.+....++.+..                        ...+.-.|..+|+...
T Consensus       226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W  305 (582)
T d1flga_         226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW  305 (582)
T ss_dssp             SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred             CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence                             00111 23567777777776541                        2346778899999887


Q ss_pred             EEeCCCCCCCC-------ceEEEc-cCC---CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccc
Q 001362          615 TIDAGGGLPEN-------PRICFN-KNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI  683 (1092)
Q Consensus       615 ~~~~~~~~~~v-------~~v~~s-~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  683 (1092)
                      .++...+....       ..+.+. .++   ..++..+.++.+.++|..+++.+....................      
T Consensus       306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~------  379 (582)
T d1flga_         306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTG------  379 (582)
T ss_dssp             EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTC------
T ss_pred             cccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccCccccccccccccc------
Confidence            77653321111       111121 133   2566678899999999999987765443333332222211100      


Q ss_pred             cCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEee
Q 001362          684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  763 (1092)
Q Consensus       684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~  763 (1092)
                         .........+  .....+....              ......|.......-...++.|+...+++...+....+|..
T Consensus       380 ---~~~~~~~~~~--~~~~~~~~~~--------------~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~  440 (582)
T d1flga_         380 ---RPVEREGQRP--PLPEPGQKHG--------------KAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTE  440 (582)
T ss_dssp             ---CEEECTTCSC--CCCCTTCSSC--------------CCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEEC
T ss_pred             ---cceecccccc--cccccccccc--------------ceEEECCCccCCcccccceecCCCCceeeeccccccccccc
Confidence               0000000000  0000000000              00000111001111223467777666666655533333321


Q ss_pred             cCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCC
Q 001362          764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP  842 (1092)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~  842 (1092)
                      ....                  ..+.            .........-+-     ... .|.+.-+|+.+++.+.+...+
T Consensus       441 ~~~~------------------~~g~------------~~~~~~~~~~~~-----~~~~~G~l~AiD~~TG~i~W~~~~~  485 (582)
T d1flga_         441 EVSY------------------TKGS------------AYLGMGFRIKRM-----YDDHVGSLRAMDPVSGKVVWEHKEH  485 (582)
T ss_dssp             CCCC------------------CTTS------------CCCCEEEEEEES-----CSSCSEEEEEECTTTCCEEEEEEES
T ss_pred             cccc------------------cccc------------cccccCcccccc-----ccCCCCeEEEEcCCCCcEEeecCCC
Confidence            1100                  0000            000001111000     001 367888999999888776543


Q ss_pred             CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCC-eEEEEEcCCCC-EEEEE
Q 001362          843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALN-ILVSS  904 (1092)
Q Consensus       843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~-~l~s~  904 (1092)
                      ..... -.++. .+.++++|+.||.++-+|.++|+.+.+++-.... -.-+.|..||+ +++..
T Consensus       486 ~p~~~-g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~  547 (582)
T d1flga_         486 LPLWA-GVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             SCCCS-CCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCcc-ceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            32221 11223 4568888999999999999999999887632211 11156667885 44443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.58  E-value=0.002  Score=66.28  Aligned_cols=196  Identities=10%  Similarity=0.067  Sum_probs=126.5

Q ss_pred             EEEEe---cCCCEEEEEe--CCeEEEEEcCCceeeEEecC-CCCCeEEEEEcCC-CCCEEEEEeCCC-------------
Q 001362          807 CFALS---KNDAYLFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPH-DNNVIAIGMDDS-------------  866 (1092)
Q Consensus       807 ~~~~s---~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~-d~~~lasg~~dg-------------  866 (1092)
                      .+.+.   +||+++.+..  +++|.+.|+.+.++.+.... ....+..+...++ ...+++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            44554   4899999997  58899999999998665443 3345666665431 455777766532             


Q ss_pred             -----cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEEc-----------
Q 001362          867 -----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDV-----------  915 (1092)
Q Consensus       867 -----~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg---------------~i~iwd~-----------  915 (1092)
                           .+.++|..+.+...++.- .+....+++++||+++++.+.+.               .+.+++.           
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                 367889999888776653 34567799999999999887532               1333332           


Q ss_pred             ------------CCCc-eeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCCcEEEEEcCCceeee--------e
Q 001362          916 ------------DGWG-IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLK--------Q  972 (1092)
Q Consensus       916 ------------~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~~~~--------~  972 (1092)
                                  .... ......+....       ....+.++|||++++++  -+.++.|+|++.-....        .
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVpK-------sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~  320 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIAN-------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA  320 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEES-------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred             cEEeCCceeecccccCCcceeEEEecCC-------CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence                        2100 00011122222       34579999999999995  57899999996422110        0


Q ss_pred             --eccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001362          973 --WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       973 --~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
                        -.....-....-+|...|.-..|---|..|.-|++...
T Consensus       321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred             EEeecccCcCccccccCCCceEEEEeeccceEEEEecchh
Confidence              01112455667789888865555668999999998543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.53  E-value=0.12  Score=57.55  Aligned_cols=62  Identities=13%  Similarity=0.112  Sum_probs=46.3

Q ss_pred             CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001362          957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus       957 ~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
                      |.|.-+|+.+|+.+-+...++  ++.+-..+..|..+++|+.||.++-+|.++|+.+.++....
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~--p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~  527 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS  527 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CeEEEEcCCCCcEEeecCCCC--CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCC
Confidence            467778888888876644332  22322345678888899999999999999999999988433

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.50  E-value=0.05  Score=52.62  Aligned_cols=229  Identities=12%  Similarity=0.112  Sum_probs=143.3

Q ss_pred             EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001362          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  419 (1092)
Q Consensus       340 v~~spdg~~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~  419 (1092)
                      .-.+|..+ ++|.-+ ..++.|+|+++.+.++...+                    ..+|..-.|-.+. .|+-.+ +..
T Consensus        68 AIMhP~~~-IiALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~-~L~lVT-~ta  123 (327)
T d1utca2          68 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA  123 (327)
T ss_dssp             EEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEESSSS-EEEEEC-SSE
T ss_pred             hhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEEc--------------------CCCcEEEEecCCC-EEEEEc-CCc
Confidence            34568887 566544 46899999999988876442                    3578788887654 444443 345


Q ss_pred             EEEEEccCCCcccceEEEccccc----ceeEEEEecCCCcEEEEEE------eCCCcEEEEECCCCceeEEEecCCcCeE
Q 001362          420 VQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITC------GDDKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1092)
Q Consensus       420 i~iwd~~~~~~~~~~~~~~~h~~----~v~~~~~s~d~~~l~l~s~------~~d~~i~vwd~~~~~~~~~~~~~~~~v~  489 (1092)
                      |+=|++++...  +...+..|..    .|..-..+++.+++ +++|      +-.|.+.+|..+.+ .-+.++||.+...
T Consensus       124 VYHW~~~g~s~--P~k~fdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~  199 (327)
T d1utca2         124 VYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA  199 (327)
T ss_dssp             EEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEE
T ss_pred             eEEEcccCCCC--chhhhhhcccccCceEEEEEECCCCCEE-EEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeE
Confidence            99999965442  3334555543    57777788899963 3333      12367889996654 4567888887776


Q ss_pred             EEeecccCCcc-EEEEEe---cCCeEEEEEcCCCCc---e-----EEecCC----CCceEEEEEccCCCEEEEEecCCCC
Q 001362          490 SLCPHAKENIH-FIFSIS---VDGKIKAWLYDSLGA---R-----VDYDAP----GLGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       490 ~~~~~~~~~~~-~l~s~~---~dg~i~vwd~~~~~~---~-----~~~~~~----~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      .+.+....... +++.+.   ..+.+++.++.....   .     ..+..+    ..-..++..|+.-..++..+.    
T Consensus       200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK----  275 (327)
T d1utca2         200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----  275 (327)
T ss_dssp             EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET----
T ss_pred             EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec----
Confidence            66654333222 333222   236788888866321   1     111111    222456777777777777654    


Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001362          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  603 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~  603 (1092)
                      .|.++++|+.++.++..-+-..   ..|...+-..+..-+++...+|.|.
T Consensus       276 ~G~i~lyDleTgt~i~~nRIs~---~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         276 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             CcEEEEEEcccccEEEEeecCC---CceEEeccCCCCceEEEECCCCeEE
Confidence            6789999999999987766544   5666555555555666666666654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.43  E-value=0.016  Score=64.81  Aligned_cols=189  Identities=12%  Similarity=0.045  Sum_probs=103.5

Q ss_pred             eEEEEEcCCceeeEEecCCCC---------CeEEEEEcC--CCCCEEEEEeCCCcEEEEEcCCceeeEeeccccC-----
Q 001362          824 VISLYIVMTFKTILTIMPPSP---------TATSLAFNP--HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-----  887 (1092)
Q Consensus       824 ~i~iwd~~~~~~~~~~~~~~~---------~i~~l~~s~--~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-----  887 (1092)
                      .|...|.++++....++....         .........  .....++.++.+|.++++|..+|+.+........     
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~  363 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence            356667777776655443211         111222222  1124677888999999999999987654321100     


Q ss_pred             ------------------------------CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCC
Q 001362          888 ------------------------------RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP  937 (1092)
Q Consensus       888 ------------------------------~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  937 (1092)
                                                    .-..++++|+..++.....+....++.....+...     ...+......
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~  438 (573)
T d1kb0a2         364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ-----AGPGKPQSGT  438 (573)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC-----CCTTSTTGGG
T ss_pred             cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeeccccccccc-----CCCCcccccc
Confidence                                          01124677777777777766666666554422111     0000000000


Q ss_pred             CceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeec
Q 001362          938 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       938 ~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      ......+ +++.-.....-|.+.-||+.+|+.+-+...+  .+...-..+-.|.+|++|+.||.++.+|..+|+.+.++.
T Consensus       439 ~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~--~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         439 GWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV--SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             TCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCC--CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            0000000 0000000011256788888888887664332  222222345578899999999999999999999999987


Q ss_pred             ccc
Q 001362         1018 STA 1020 (1092)
Q Consensus      1018 ~~~ 1020 (1092)
                      ...
T Consensus       516 ~~~  518 (573)
T d1kb0a2         516 TGT  518 (573)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.079  Score=52.16  Aligned_cols=241  Identities=9%  Similarity=-0.039  Sum_probs=145.3

Q ss_pred             eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-CCCEEEEEEcc
Q 001362          348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYH  426 (1092)
Q Consensus       348 ~llasg~~d~~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~  426 (1092)
                      +||++-.  ..|+-.++.+.+...                    +......+.+++|.+..+.|.-.. ..+.|.--++.
T Consensus         3 fLl~s~~--~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~   60 (266)
T d1ijqa1           3 YLFFTNR--HEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD   60 (266)
T ss_dssp             EEEEECB--SSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred             EEEEECC--CeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEec
Confidence            3444432  458888887655332                    222445678999999888887764 45667766665


Q ss_pred             CCCcccce-EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEE
Q 001362          427 GGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI  505 (1092)
Q Consensus       427 ~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  505 (1092)
                      ........ ..+......+..+++.+.+.. +.++-...+.|.+.++........+.........+++.+. .|.++++.
T Consensus        61 ~~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~  138 (266)
T d1ijqa1          61 RAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTD  138 (266)
T ss_dssp             -------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEE
T ss_pred             CCCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEec
Confidence            42211111 112233345778999877775 4455566788999998877665555555566788888654 33444443


Q ss_pred             -ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEE
Q 001362          506 -SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV  584 (1092)
Q Consensus       506 -~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  584 (1092)
                       +..+.|...+++...........-.....+++.+.++.|+.+..   ..+.|...++............. .......+
T Consensus       139 ~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~~~~~~~~~~-~~~~p~~l  214 (266)
T d1ijqa1         139 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEK-RLAHPFSL  214 (266)
T ss_dssp             CSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTT-TTSSEEEE
T ss_pred             cCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC---CcCEEEEEECCCCCEEEEEeCCC-cccccEEE
Confidence             23456766676655544444444456789999999888887743   25578888886654433333322 11335566


Q ss_pred             EEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEeC
Q 001362          585 HFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       585 ~~~p~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~  618 (1092)
                      ++.  +.+|+.+ ..++.|...+..++.....+..
T Consensus       215 av~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         215 AVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             EEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             EEE--CCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence            665  3455554 4667888888877776665543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.11  E-value=0.057  Score=57.82  Aligned_cols=247  Identities=9%  Similarity=0.015  Sum_probs=126.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEe-CC----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-------
Q 001362          395 PGVSVNRVVWSPDGSLLGVAY-SK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-------  462 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~-~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-------  462 (1092)
                      +.-.+..+++|||++++|.+- ..    ..+++.|+.+|+.+..  .+.  ......++|++|++.+ +.+.-       
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~--~~~~~~~~W~~D~~~~-~Y~~~~~~~~~~  197 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGKGM-FYNAYPQQDGKS  197 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSSEE-EEEECCCCSSCC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc--ccc--cccccceEEcCCCCEE-EEEEeccccCcc
Confidence            334455678899999999762 22    3799999999975432  121  1123578999999952 33321       


Q ss_pred             --------CCCcEEEEECCCCcee--EEEecCCcC--eEEEeecccCCccEEEEEec---CCeEEEE--EcCCCCc----
Q 001362          463 --------DDKTIKVWDAVTGSRT--YSFEGHGAP--VYSLCPHAKENIHFIFSISV---DGKIKAW--LYDSLGA----  521 (1092)
Q Consensus       463 --------~d~~i~vwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~~l~s~~~---dg~i~vw--d~~~~~~----  521 (1092)
                              ....|..|.+.+...-  ..+.....+  +..+..  +.++++++....   ++...+|  ++.....    
T Consensus       198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~--s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~  275 (430)
T d1qfma1         198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG  275 (430)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred             cccccccCCcceEEEEECCCCccccccccccccCCceEEeeec--cCCcceeeEEeeccCCccEEEEEeeCCCccccccc
Confidence                    1225777877776432  333333333  333333  556677654332   3334444  4332211    


Q ss_pred             ----eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE--EEEE-eeccccCCceEEEEEcCCCCEEE
Q 001362          522 ----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTY-QGLQLQHNSVSVVHFDTAKDQIL  594 (1092)
Q Consensus       522 ----~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~-~~~~~~~~~v~~~~~~p~~~~l~  594 (1092)
                          ............ ... .+|..++.-+.....++.|...++.....  ...+ ..+.   ..+..-.+...+.+|+
T Consensus       276 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~---~~~~~~~~~~~~~~lv  350 (430)
T d1qfma1         276 ILKWVKLIDNFEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE---KDVLEWVACVRSNFLV  350 (430)
T ss_dssp             SCCCEEEECSSSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCS---SCEEEEEEEETTTEEE
T ss_pred             ccceeEeecccccceE-EEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccC---cceeeeEEEEECCEEE
Confidence                111121122222 222 23344444333333456677777665432  1222 2222   3444434444455666


Q ss_pred             EE-eCCC--cEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC----CeEEEEECCCCc
Q 001362          595 AA-GDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN  655 (1092)
Q Consensus       595 ~~-s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iw~~~~~~  655 (1092)
                      .. ..++  .|++++..++..........  ..+..+...++...+.....+    .++.-+|+.+++
T Consensus       351 l~~~~~~~~~l~v~~~~~~~~~~~~~~~~--~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         351 LCYLHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEcCCEeEEEEEECCCCcEEEecCCCC--ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            54 3444  47889998887765544332  223334434455544443332    678888887764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.94  E-value=0.19  Score=48.44  Aligned_cols=258  Identities=11%  Similarity=0.119  Sum_probs=143.3

Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001362          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  633 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1092)
                      ...|.+.|+..+.....-.-      ...+.-.+|..+.++.-+ ..++.+||+++.+.+........   |.--.|-. 
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi------~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~---VvfWkWis-  112 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWIS-  112 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC------CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEEESS-
T ss_pred             CceEEEEECCCCCcceeccc------chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCC---cEEEEecC-
Confidence            56788899876653322211      223445788887776655 56899999999999999887643   55566654 


Q ss_pred             CCEEEEEeCCCeEEEEECCCC-ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001362          634 GTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1092)
Q Consensus       634 ~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l  712 (1092)
                      .+.|+..+. ..++-|+++.. .+...+..|..                                               
T Consensus       113 ~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~-----------------------------------------------  144 (327)
T d1utca2         113 LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSS-----------------------------------------------  144 (327)
T ss_dssp             SSEEEEECS-SEEEEEESSSSCCCEEEEECCGG-----------------------------------------------
T ss_pred             CCEEEEEcC-CceEEEcccCCCCchhhhhhccc-----------------------------------------------
Confidence            445555554 58999998532 12111111100                                               


Q ss_pred             eccccccCccccccccCCccccccEEEEEEecCCcEEEEeec-------CCeeEEEeecCCCc-CcCcccccccCCcccc
Q 001362          713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-------NGVHLMWRWPRNDL-TLSTEATTKVPPRLYQ  784 (1092)
Q Consensus       713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~lw~~~~~~~-~~~~~~~~~~~~~~w~  784 (1092)
                                         -....|-....+++.++++..+-       .|.+.+|..+.... ..+|...         
T Consensus       145 -------------------L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa---------  196 (327)
T d1utca2         145 -------------------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA---------  196 (327)
T ss_dssp             -------------------GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEE---------
T ss_pred             -------------------ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceee---------
Confidence                               01223444455555555543321       25566666544311 0111110         


Q ss_pred             CCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce---e------eEEecC---CCCCeEEEEEc
Q 001362          785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---T------ILTIMP---PSPTATSLAFN  852 (1092)
Q Consensus       785 ~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~---~------~~~~~~---~~~~i~~l~~s  852 (1092)
                           +.....+.+..+...+.|++.  .+     ...++++|.++.+..   .      +..+-.   ..+-..++.+|
T Consensus       197 -----~F~~~~~~g~~~~~~lf~fa~--r~-----~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs  264 (327)
T d1utca2         197 -----SFAQFKMEGNAEESTLFCFAV--RG-----QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS  264 (327)
T ss_dssp             -----EEEEECCTTCSSCEEEEEEEE--EE-----TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE
T ss_pred             -----eeEEEEcCCCCCCceEEEEEE--CC-----CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee
Confidence                 122222222112222222221  10     013678898886421   1      111111   23455788888


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEE
Q 001362          853 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF  911 (1092)
Q Consensus       853 ~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~  911 (1092)
                      + .-.++..-+.-|.+++||+.++.++..-+--.+.|...+-..+..=++....+|.|.
T Consensus       265 ~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         265 E-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             T-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             c-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            8 666888999999999999999999877665666666555555544455555666554

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.47  E-value=0.00097  Score=49.25  Aligned_cols=55  Identities=18%  Similarity=0.376  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhcc
Q 001362            5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSS   59 (1092)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~l~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~~   59 (1092)
                      ++|+.+-|++||..+||.+++.+|.+|..++++  ...-..-+|+-+|..++.+-.+
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkK   63 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK   63 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHH
Confidence            679999999999999999999999999988764  5666677888899888777444

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.74  E-value=2.4  Score=42.41  Aligned_cols=198  Identities=12%  Similarity=0.127  Sum_probs=113.5

Q ss_pred             CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEc------CCCCCEEEEEe--CCC--cEEEEEcCC-ceeeE
Q 001362          813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN------PHDNNVIAIGM--DDS--TILIYNARS-SEVIS  880 (1092)
Q Consensus       813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s------~~d~~~lasg~--~dg--~v~iwd~~~-~~~~~  880 (1092)
                      +..+++... .+-|.+||++ |+.++.+.  .+.+..+..-      . ...-+++++  .++  +|.+|.+.. ...+.
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~-~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNG-KKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETT-EEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCC-cceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            344555444 3559999985 77777764  3455554432      2 223344554  223  677887753 22333


Q ss_pred             eeccc-------cCCeEEEEE--cCC-CC-EEEEEeCCCcEEEEEcCCCc--eeeeeeeecCCCCcCCCCCceEEEEecC
Q 001362          881 KLEGH-------SKRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1092)
Q Consensus       881 ~l~~h-------~~~V~~l~~--spd-g~-~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~l~~s~d  947 (1092)
                      .+...       ...+..+|+  ++. |. +++....+|.+..|.+....  ......++.+.-.    ..+..|++.+.
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~----~q~EGCVvDde  190 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN----SQTEGMAADDE  190 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS----SCEEEEEEETT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC----CccceEEEeCC
Confidence            33321       124667777  664 44 45666778999988874321  1222333333222    25889999999


Q ss_pred             CCEEEEEeCC-cEEEEEcC-----CceeeeeeccC-CCCCEEEEEEe--cCCC-EEEEEE-CCCcEEEEEcCC-CceEEe
Q 001362          948 QTRFLLVHET-HLAIYEAE-----ELTCLKQWFPI-SSVPISQATFS--CDCR-MVFTSF-VDGTLSIHEASN-LEVQCR 1015 (1092)
Q Consensus       948 g~~la~~~d~-~i~lwd~~-----~~~~~~~~~~~-h~~~v~~l~fs--~dg~-~l~t~~-~Dg~i~vwd~~~-~~~~~~ 1015 (1092)
                      ...|.++.++ .+..+++.     .+..+.....+ ....+-.++.-  .++. ||++++ .+++..|||..+ ...+.+
T Consensus       191 ~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~  270 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD  270 (353)
T ss_dssp             TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             CCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence            9999998654 45555543     12222221222 25677777643  3433 555444 678999999987 477777


Q ss_pred             ecc
Q 001362         1016 ILS 1018 (1092)
Q Consensus      1016 ~~~ 1018 (1092)
                      |..
T Consensus       271 F~i  273 (353)
T d1h6la_         271 FQI  273 (353)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.24  E-value=2.5  Score=42.42  Aligned_cols=160  Identities=9%  Similarity=0.104  Sum_probs=90.5

Q ss_pred             eeEEEEecCCCcEEEEEEe------------CCCcEEEEECCCCcee-EEEecCCc-------CeEEEeecccCCcc-EE
Q 001362          444 VNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRT-YSFEGHGA-------PVYSLCPHAKENIH-FI  502 (1092)
Q Consensus       444 v~~~~~s~d~~~l~l~s~~------------~d~~i~vwd~~~~~~~-~~~~~~~~-------~v~~~~~~~~~~~~-~l  502 (1092)
                      --+++..|||.  .+++++            ..|.|.++|+.+.... ..+.....       ....+.+....++. +|
T Consensus        37 ~EDi~~~~dg~--~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L  114 (340)
T d1v04a_          37 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  114 (340)
T ss_dssp             CCEEEECTTSE--EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred             cceEEECCCCc--EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence            34567777776  444443            1488999998765432 22221111       12333333334444 34


Q ss_pred             EEEe---cCCeEEEEEcCCCCceEE----ecC-CCCceEEEEEccCCCEEEEEecC-------------CCCceeEEEEe
Q 001362          503 FSIS---VDGKIKAWLYDSLGARVD----YDA-PGLGCTRMAYSANGRRLFSCGTS-------------KEGESFLVEWN  561 (1092)
Q Consensus       503 ~s~~---~dg~i~vwd~~~~~~~~~----~~~-~~~~i~~~~~s~dg~~l~~~~~~-------------~~~~~~i~iwd  561 (1092)
                      ++..   ...+|.++++........    ... .......+++..+|..+++--..             +...+.+.-||
T Consensus       115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~  194 (340)
T d1v04a_         115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  194 (340)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence            4432   456788888765554332    222 22357888999999888873210             11234555565


Q ss_pred             CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCc
Q 001362          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-s~dg~i~iwd~~~~~  611 (1092)
                      ..  +......+.    ...+.++++|++++|+++ +..+.|++|++....
T Consensus       195 ~~--~~~~~~~~l----~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         195 PN--DVRVVAEGF----DFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             SS--CEEEEEEEE----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CC--ceEEEcCCC----CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            43  332233332    467899999999888765 467789999887543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.54  E-value=1.5  Score=44.49  Aligned_cols=186  Identities=7%  Similarity=-0.029  Sum_probs=105.3

Q ss_pred             cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001362          736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1092)
Q Consensus       736 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~  815 (1092)
                      ...-+++++....+++++.++ +.+.....-......           ...........      .-..|..++|+.|  
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~-----------~~~~~~~~~~~------~ip~v~~vafs~d--   97 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITS-----------DSTPLTFKWEK------EIPDVIFVCFHGD--   97 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHS-----------SSCCCCCSEEE------ECTTEEEEEEETT--
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhc-----------cCCCCcceecc------CCCCeEEEEeeCC--
Confidence            455688888888788777775 445443211000000           00000001111      1225788999755  


Q ss_pred             EEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc-----ccCCeE
Q 001362          816 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-----HSKRVT  890 (1092)
Q Consensus       816 ~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-----h~~~V~  890 (1092)
                      .++...++.+..++..+............++..+..+|   ..++....+|.+.++++..++......+     -.+.+.
T Consensus        98 ~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~  174 (381)
T d1xipa_          98 QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQL  174 (381)
T ss_dssp             EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEE
T ss_pred             EEEEEeCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCce
Confidence            57777778888888876554444444456788888887   3566677899999999988764322211     235688


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEE-EcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001362          891 GLVFSDALNILVSSGGDAQIFVW-DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       891 ~l~~spdg~~l~s~s~Dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~  953 (1092)
                      +++|++.|+.++++..++ ..+- ++..     ...+..+...   ...+.++.|-.+..++++
T Consensus       175 ~v~ws~kgkq~v~~~g~~-~q~k~~i~~-----~~~~~~p~~~---~~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         175 AVLLKDRSFQSFAWRNGE-MEKQFEFSL-----PSELEELPVE---EYSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             EEEETTSCEEEEEEETTE-EEEEEEECC-----CHHHHTSCTT---TSEEEEEEESSSSEEEEE
T ss_pred             EEEEeCCcEEEEEeCCCc-eeeccCCCC-----ccccCCCcCC---CcceeEEEEecCceEEEE
Confidence            888888888887764332 1111 1111     0111111111   124778888877777776

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.45  E-value=1.8  Score=43.94  Aligned_cols=183  Identities=10%  Similarity=0.081  Sum_probs=108.2

Q ss_pred             CCeeEEEEecCCCEEEEEeCCeEEEEEcCCc-----------eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 001362          803 EAVPCFALSKNDAYLFSASGGVISLYIVMTF-----------KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY  871 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~-----------~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw  871 (1092)
                      ....-+++++...+++.|+...+.|..++.-           ......  .-..|..++|+. |  .|++. .++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~-d--~l~v~-~~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHG-D--QVLVS-TRNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEET-T--EEEEE-ESSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeC-C--EEEEE-eCCCEEEE
Confidence            3456788999888888888777888775321           111111  123689999975 3  45544 45668888


Q ss_pred             EcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEE
Q 001362          872 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF  951 (1092)
Q Consensus       872 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l  951 (1092)
                      +..+-........-..++..+.++|.  .++....++.+.++++..+.....  ..... .....+.+.+++|++.|+.+
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~--~~~v~-~~~~~~~~~~v~ws~kgkq~  185 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL--AQNVT-SFDVTNSQLAVLLKDRSFQS  185 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE--EESEE-EEEECSSEEEEEETTSCEEE
T ss_pred             EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccc--cCCcc-eEEecCCceEEEEeCCcEEE
Confidence            87664433333334566888888775  566677889999999988753221  11000 00111357788888888888


Q ss_pred             EEEeCCcEEEE-EcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEE
Q 001362          952 LLVHETHLAIY-EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       952 a~~~d~~i~lw-d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~  997 (1092)
                      +++..+...+- ++.....+.. .......|.++.|..+..++++-+
T Consensus       186 v~~~g~~~q~k~~i~~~~~~~~-p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         186 FAWRNGEMEKQFEFSLPSELEE-LPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             EEEETTEEEEEEEECCCHHHHT-SCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEeCCCceeeccCCCCccccCC-CcCCCcceeEEEEecCceEEEEEC
Confidence            88644433332 1111111110 111345788999988777777653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.74  E-value=5.4  Score=39.71  Aligned_cols=194  Identities=15%  Similarity=0.156  Sum_probs=107.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc----cCCccEEEEEe--cC--CeEEEEEcCCCCce-EEecC
Q 001362          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA----KENIHFIFSIS--VD--GKIKAWLYDSLGAR-VDYDA  527 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~--~d--g~i~vwd~~~~~~~-~~~~~  527 (1092)
                      +++....++-|.+||+ .|+.++.+.  .+.++.+....    ......++.++  .+  .+|.+|.+...... ..+..
T Consensus        42 lI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~  118 (353)
T d1h6la_          42 KLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD  118 (353)
T ss_dssp             EEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred             EEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence            5666666667999997 488887664  35666665421    12222344444  22  35888877643332 22222


Q ss_pred             C-------CCceEEEEE--ccC-CCEEEEEecCCCCceeEEEEeC---CCC----eEEEEEeeccccCCceEEEEEcCCC
Q 001362          528 P-------GLGCTRMAY--SAN-GRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK  590 (1092)
Q Consensus       528 ~-------~~~i~~~~~--s~d-g~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~~~~~p~~  590 (1092)
                      .       ...+..+|+  ++. |...+.... .  .+.+..|.+   ..+    +.++.+..    ...+..|.+....
T Consensus       119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~-k--~G~v~q~~l~~~~~g~v~~~lvr~f~~----~~q~EGCVvDde~  191 (353)
T d1h6la_         119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG-K--EGEFEQYELNADKNGYISGKKVRAFKM----NSQTEGMAADDEY  191 (353)
T ss_dssp             SSSCEECSSSSCCCEEEEECTTTCCEEEEEEC-S--SSEEEEEEEEECTTSSEEEEEEEEEEC----SSCEEEEEEETTT
T ss_pred             cccccccccCcceEEEEEecCCCCeEEEEEEc-C--CceEEEEEEEcCCCCceeeEeeeccCC----CCccceEEEeCCC
Confidence            1       123566776  664 444444432 2  445666544   333    33444443    2578899999999


Q ss_pred             CEEEEEeCCCcEEEEECCC-----CceEEEEeCCCCCCCCceEEEc--cC--CCEEEEEeCCCeEEEEECCCC-ceeeec
Q 001362          591 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFN--KN--GTLLAVIANENRIKILETPES-NSVDAA  660 (1092)
Q Consensus       591 ~~l~~~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s--~~--~~~l~~~~~dg~i~iw~~~~~-~~~~~~  660 (1092)
                      ..|+.+-++..+..++.+.     +..+.......-...+-.++.-  .+  |-++++.-.+++..+|+.... ..+..+
T Consensus       192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence            9999999887776666542     2222222221122345556543  23  334444445789999998764 444333

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.59  E-value=1.4  Score=43.21  Aligned_cols=225  Identities=11%  Similarity=0.040  Sum_probs=106.3

Q ss_pred             CeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCC---------CcEEEEEcCCceeeE--eeccccCCe
Q 001362          823 GVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARSSEVIS--KLEGHSKRV  889 (1092)
Q Consensus       823 g~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---------g~v~iwd~~~~~~~~--~l~~h~~~V  889 (1092)
                      ..+.+||..+++-  +..+..+...-..+.+   ++++++.|+..         ..+.+||..+.+...  .+..-...-
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~   95 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI   95 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEE---CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence            3588999887643  3223222222222222   45666666531         367788887654322  221111111


Q ss_pred             EEEEEcCCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-e-----CCc
Q 001362          890 TGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-----ETH  958 (1092)
Q Consensus       890 ~~l~~spdg~~l~s~s~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-----d~~  958 (1092)
                      .++.  .+++.++.++.++.     ...++..+............        .....+...++.+++.+ .     ...
T Consensus        96 ~~~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------r~~~~~~~~~~~~~~~GG~~~~~~~~~  165 (288)
T d1zgka1          96 GVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR--------RIGVGVAVLNRLLYAVGGFDGTNRLNS  165 (288)
T ss_dssp             EEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC--------CBSCEEEEETTEEEEECCBCSSCBCCC
T ss_pred             eccc--cceeeEEecceecccccceeeeeccccCccccccccccc--------cccceeeeeeecceEecCcccccccce
Confidence            2222  25666666655443     44466666442221111110        11112222344444443 2     245


Q ss_pred             EEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCceEEeeccccccCCCCccCcccc
Q 001362          959 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1033 (1092)
Q Consensus       959 i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1033 (1092)
                      +..||..+.+............-.+ ....+++.++.++.+     .....+|..+......-    ..+..    .. .
T Consensus       166 ~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~----r~-~  235 (288)
T d1zgka1         166 AECYYPERNEWRMITAMNTIRSGAG-VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA----PMKHR----RS-A  235 (288)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC----CCSSC----CB-S
T ss_pred             EEEeecccccccccccccccccccc-ccceeeeEEEecCccccccccceeeeeecceeeeccc----CccCc----cc-c
Confidence            8889987765443221111111112 223456666666655     34667777766544211    11111    11 1


Q ss_pred             eEEEECCCCCCEEEEEeCCCc-----EEEEeCCCCCCccccCCCCC
Q 001362         1034 HAIAAHPLKPTQFAVGLTNGE-----VYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus      1034 ~~~~~~p~~~~~l~~~~~dg~-----v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
                      .+++..  ++++++.|+.++.     |.+||+..  .+|...++..
T Consensus       236 ~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p  277 (288)
T d1zgka1         236 LGITVH--QGRIYVLGGYDGHTFLDSVECYDPDT--DTWSEVTRMT  277 (288)
T ss_dssp             CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT--TEEEEEEECS
T ss_pred             eEEEEE--CCEEEEEecCCCCeecceEEEEECCC--CEEEECCCCC
Confidence            223333  3678888876653     67888854  4688775543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.99  E-value=4.5  Score=42.33  Aligned_cols=113  Identities=11%  Similarity=0.082  Sum_probs=63.0

Q ss_pred             cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC---CCEEEEE-e------
Q 001362          886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD---QTRFLLV-H------  955 (1092)
Q Consensus       886 ~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d---g~~la~~-~------  955 (1092)
                      -...++|+|.|||++|++--..|.|++++..+++.....-+........-......++|+|+   ..++..+ .      
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            35678999999999998765579999998887664432222111111111135778999986   3444331 0      


Q ss_pred             -C----Cc--EEEEEcCCce-------ee-eeeccCCCCCEEEEEEecCCCEEEEEEC
Q 001362          956 -E----TH--LAIYEAEELT-------CL-KQWFPISSVPISQATFSCDCRMVFTSFV  998 (1092)
Q Consensus       956 -d----~~--i~lwd~~~~~-------~~-~~~~~~h~~~v~~l~fs~dg~~l~t~~~  998 (1092)
                       +    +.  +..+......       .+ .............|.|.|||.+.++.+.
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence             1    11  2223322111       11 1111111234568999999998887764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.24  E-value=5.9  Score=35.30  Aligned_cols=153  Identities=8%  Similarity=0.025  Sum_probs=85.2

Q ss_pred             ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCcCeEEE--------eecccCCccEEEEEec-CCeEE
Q 001362          443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPVYSL--------CPHAKENIHFIFSISV-DGKIK  512 (1092)
Q Consensus       443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~--------~~~~~~~~~~l~s~~~-dg~i~  512 (1092)
                      +|.+++.  |++. .+.+|+......+|-++.|+......- .-+.|+.+        .+. .++..-++++.. .|.++
T Consensus       105 RI~S~~y--ddk~-vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~-~g~~~sfF~adl~SG~lr  180 (313)
T d2hu7a1         105 RILSGVD--TGEA-VVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFF-GGGRVSLFTSNLSSGGLR  180 (313)
T ss_dssp             EEEEEEE--CSSC-EEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEE-ETTEEEEEEEETTTEEEE
T ss_pred             EEEEeee--cCce-EEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeee-cCCcceEEEEecccCCEE
Confidence            4555554  5665 677777777888898888865432211 11223333        221 112122333333 55555


Q ss_pred             EEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE-Eeecc---ccCCceEEEEEcC
Q 001362          513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQ---LQHNSVSVVHFDT  588 (1092)
Q Consensus       513 vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~---~~~~~v~~~~~~p  588 (1092)
                      +++           ...+.++...+.++.+. ++.-..-. +....-+|+++++..+. +....   ...-.|.-+-+.|
T Consensus       181 i~t-----------pkeGS~~~ay~~~gnKV-~sdyEt~g-Esywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~P  247 (313)
T d2hu7a1         181 VFD-----------SGEGSFSSASISPGMKV-TAGLETAR-EARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP  247 (313)
T ss_dssp             EEC-----------CSSEEEEEEEECTTSCE-EEEEEESS-CEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECT
T ss_pred             Eec-----------CCCCcccceeEccCcee-eeccCCCC-ceEEEEEecccCceeeeecCcccceeecceEEEeeeeCC
Confidence            553           34456666666666655 55443332 34444669987765432 22211   0123455566899


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceEE
Q 001362          589 AKDQILAAGDDHVIKIWDMNKVQLLT  614 (1092)
Q Consensus       589 ~~~~l~~~s~dg~i~iwd~~~~~~~~  614 (1092)
                      +++.++.+-.||.-++|.  +|+.+.
T Consensus       248 dd~L~iiakrdG~s~lF~--nGk~in  271 (313)
T d2hu7a1         248 DGRLAVVARREGRSAVFI--DGERVE  271 (313)
T ss_dssp             TSCEEEEEEETTEEEEEE--TTEEEC
T ss_pred             CCcEEEEEecCCchheee--cceEec
Confidence            999989999999999887  455543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.98  E-value=4.7  Score=42.20  Aligned_cols=53  Identities=21%  Similarity=0.303  Sum_probs=38.2

Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee--Eeec------cccCCeEEEEEcCC
Q 001362          844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLE------GHSKRVTGLVFSDA  897 (1092)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~--~~l~------~h~~~V~~l~~spd  897 (1092)
                      ...++|+|.| |++++++--..|.|++++..+++..  ..+.      .-.+....|+|+|+
T Consensus        27 ~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4678999999 8888886655799999998776532  2221      12346788999985

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.95  E-value=7.4  Score=34.64  Aligned_cols=165  Identities=13%  Similarity=0.092  Sum_probs=98.6

Q ss_pred             EEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee--Eeecccc-------CCeEEEEE
Q 001362          825 ISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGHS-------KRVTGLVF  894 (1092)
Q Consensus       825 i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~--~~l~~h~-------~~V~~l~~  894 (1092)
                      +.+-++.....-..+.... -.|.+++..  |.+.+++|+......+|-++.|+..  ..+.+.+       +-|..+.+
T Consensus        84 i~~~Nlk~~GEE~~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~  161 (313)
T d2hu7a1          84 LFKVNTSRPGEEQRLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGF  161 (313)
T ss_dssp             EEEEETTSTTCEEECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEE
T ss_pred             EEEEccCCCCeeeEecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEee
Confidence            4455554222223333333 456677775  6789999999999999999988743  3333321       22333332


Q ss_pred             -cCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE----eCCcEEEEEcCCce
Q 001362          895 -SDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELT  968 (1092)
Q Consensus       895 -spdg~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~----~d~~i~lwd~~~~~  968 (1092)
                       .+..+-++++.- .|.++|++-..|                   .+.....+++++. ++.    .+....-+|.++++
T Consensus       162 ~~g~~~sfF~adl~SG~lri~tpkeG-------------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~  221 (313)
T d2hu7a1         162 FGGGRVSLFTSNLSSGGLRVFDSGEG-------------------SFSSASISPGMKV-TAGLETAREARLVTVDPRDGS  221 (313)
T ss_dssp             EETTEEEEEEEETTTEEEEEECCSSE-------------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC
T ss_pred             ecCCcceEEEEecccCCEEEecCCCC-------------------cccceeEccCcee-eeccCCCCceEEEEEecccCc
Confidence             222233444443 455555554442                   3666777888777 432    22233356888776


Q ss_pred             eeeeeccCC------CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceE
Q 001362          969 CLKQWFPIS------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1092)
Q Consensus       969 ~~~~~~~~h------~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~ 1013 (1092)
                      .-+.-+++.      .-.|+-+-+.||+++++.+-.||.-+++.  +|+.+
T Consensus       222 yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~i  270 (313)
T d2hu7a1         222 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERV  270 (313)
T ss_dssp             EEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEE
T ss_pred             eeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEe
Confidence            555434332      45677777999999988899999999986  55554

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.35  E-value=4.9  Score=38.80  Aligned_cols=175  Identities=12%  Similarity=0.018  Sum_probs=82.8

Q ss_pred             eEEEEEcCCceeeEE--ecCCCCCeEEEEEcCCCCCEEEEEeCCC-----cEEEEEcCCceeeEeec--cccCCeEEEEE
Q 001362          824 VISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLE--GHSKRVTGLVF  894 (1092)
Q Consensus       824 ~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~~~~l~--~h~~~V~~l~~  894 (1092)
                      .+.+||..+.+....  +......-.++.+   ++++++.|+.++     ....++..+..-...-.  ........+. 
T Consensus        71 ~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~---~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-  146 (288)
T d1zgka1          71 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-  146 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-
T ss_pred             hhhhcccccccccccccccceecceecccc---ceeeEEecceecccccceeeeeccccCccccccccccccccceeee-
Confidence            477888876544322  2211112223333   566666665544     34456666554222111  1111111122 


Q ss_pred             cCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeC-----CcEEEEE
Q 001362          895 SDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYE  963 (1092)
Q Consensus       895 spdg~~l~s~s~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d-----~~i~lwd  963 (1092)
                       .+++.++.++.+     ..+..||...++...........       ...+. ...++.+++. +.+     .....||
T Consensus       147 -~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~i~i~GG~~~~~~~~~~~~~~  217 (288)
T d1zgka1         147 -LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR-------SGAGV-CVLHNCIYAAGGYDGQDQLNSVERYD  217 (288)
T ss_dssp             -ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC-------BSCEE-EEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred             -eeecceEecCcccccccceEEEeecccccccccccccccc-------ccccc-cceeeeEEEecCccccccccceeeee
Confidence             244556655543     34788888775533321111111       11122 2334445444 322     3578888


Q ss_pred             cCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCC-----cEEEEEcCCCce
Q 001362          964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEV 1012 (1092)
Q Consensus       964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg-----~i~vwd~~~~~~ 1012 (1092)
                      ..+.+....-. ....+....+...++++++.|+.++     .+.+||+.+...
T Consensus       218 ~~~~~~~~~~~-~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W  270 (288)
T d1zgka1         218 VETETWTFVAP-MKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW  270 (288)
T ss_dssp             TTTTEEEECCC-CSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             ecceeeecccC-ccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence            87765443211 1122222222234788888887654     378899998753

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.62  E-value=0.36  Score=41.64  Aligned_cols=60  Identities=12%  Similarity=0.194  Sum_probs=48.8

Q ss_pred             hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccc
Q 001362           72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLS  131 (1092)
Q Consensus        72 ~~~~l~~q~~lEll~~~~~~~al~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~  131 (1092)
                      ++|.++-+.||||+..|...+|..|+++.-..+.....++.++|..+.......+++...
T Consensus        45 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~  104 (149)
T d2nxpa1          45 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETML  104 (149)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGG
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHH
Confidence            899999999999999999999999999865555555678888898887776665555433